Query 009307
Match_columns 538
No_of_seqs 460 out of 2761
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 22:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.3E-67 2.8E-72 560.7 34.8 495 2-538 165-694 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 4.4E-30 9.5E-35 263.1 21.7 222 254-508 161-393 (421)
3 KOG2059 Ras GTPase-activating 99.9 1.2E-22 2.7E-27 207.2 16.6 243 259-536 4-276 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-21 2.6E-26 166.1 14.2 119 259-388 1-121 (121)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.9E-20 6.4E-25 159.4 14.9 121 261-390 1-121 (121)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 2.6E-20 5.7E-25 160.9 13.2 119 262-387 1-126 (126)
7 cd08375 C2_Intersectin C2 doma 99.8 7.8E-20 1.7E-24 159.3 14.8 121 255-388 10-135 (136)
8 cd08681 C2_fungal_Inn1p-like C 99.8 3.9E-20 8.4E-25 158.0 12.6 117 260-388 1-118 (118)
9 cd08376 C2B_MCTP_PRT C2 domain 99.8 8.7E-20 1.9E-24 155.3 14.4 115 261-389 1-115 (116)
10 cd04036 C2_cPLA2 C2 domain pre 99.8 1.1E-19 2.4E-24 155.4 14.9 117 262-389 2-118 (119)
11 cd08379 C2D_MCTP_PRT_plant C2 99.8 8.9E-20 1.9E-24 155.6 13.1 116 261-384 1-125 (126)
12 KOG1030 Predicted Ca2+-depende 99.8 3.4E-20 7.4E-25 160.0 10.3 100 257-360 3-102 (168)
13 cd08677 C2A_Synaptotagmin-13 C 99.8 3.9E-20 8.6E-25 154.1 10.4 106 255-363 9-117 (118)
14 cd08395 C2C_Munc13 C2 domain t 99.8 1.4E-19 3E-24 153.1 13.8 107 262-369 2-115 (120)
15 cd04016 C2_Tollip C2 domain pr 99.8 2E-19 4.3E-24 152.5 14.7 112 418-535 2-121 (121)
16 COG5038 Ca2+-dependent lipid-b 99.8 2.1E-18 4.6E-23 185.9 25.5 310 220-537 656-1162(1227)
17 cd04019 C2C_MCTP_PRT_plant C2 99.8 5.5E-19 1.2E-23 156.3 14.3 128 261-391 1-134 (150)
18 cd04028 C2B_RIM1alpha C2 domai 99.8 5.8E-19 1.3E-23 154.2 14.0 111 259-370 28-142 (146)
19 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.4E-19 9.5E-24 153.4 13.1 120 262-389 2-126 (127)
20 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 7.3E-19 1.6E-23 150.2 14.1 119 262-388 2-121 (121)
21 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 6.9E-19 1.5E-23 151.4 13.7 121 262-386 2-122 (123)
22 cd04024 C2A_Synaptotagmin-like 99.8 6.4E-19 1.4E-23 152.8 13.5 123 260-388 1-128 (128)
23 cd08678 C2_C21orf25-like C2 do 99.8 1.3E-18 2.8E-23 150.2 15.0 122 262-391 1-122 (126)
24 cd04044 C2A_Tricalbin-like C2 99.8 7.9E-19 1.7E-23 151.3 13.6 122 259-390 1-124 (124)
25 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.9E-18 4E-23 149.0 15.7 122 259-390 3-124 (126)
26 cd08381 C2B_PI3K_class_II C2 d 99.8 4.4E-19 9.6E-24 151.8 11.6 105 259-364 12-121 (122)
27 cd08677 C2A_Synaptotagmin-13 C 99.8 6.1E-19 1.3E-23 146.9 12.0 113 380-521 1-118 (118)
28 cd04046 C2_Calpain C2 domain p 99.8 2.2E-18 4.8E-23 148.6 15.6 123 258-390 1-123 (126)
29 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.1E-18 2.4E-23 149.8 13.0 115 260-388 1-121 (121)
30 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.9E-18 4.1E-23 148.3 14.3 112 418-535 1-121 (121)
31 cd04015 C2_plant_PLD C2 domain 99.8 3.2E-18 6.9E-23 153.1 15.4 124 258-389 5-158 (158)
32 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.1E-18 2.4E-23 150.1 11.7 110 255-364 10-124 (125)
33 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.8E-18 3.9E-23 148.7 12.1 110 255-364 10-124 (125)
34 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.6E-18 7.9E-23 145.9 13.6 114 262-389 2-120 (121)
35 cd08387 C2A_Synaptotagmin-8 C2 99.8 2E-18 4.4E-23 148.7 11.9 110 255-364 11-122 (124)
36 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.5E-18 9.8E-23 148.5 14.2 123 261-389 1-133 (133)
37 cd08682 C2_Rab11-FIP_classI C2 99.8 4.1E-18 8.9E-23 147.1 13.7 111 420-534 1-126 (126)
38 cd08377 C2C_MCTP_PRT C2 domain 99.8 6.8E-18 1.5E-22 144.4 14.1 118 260-388 1-118 (119)
39 cd08385 C2A_Synaptotagmin-1-5- 99.8 4.2E-18 9.1E-23 146.7 12.3 110 255-364 11-122 (124)
40 cd08681 C2_fungal_Inn1p-like C 99.8 7E-18 1.5E-22 144.0 13.2 112 418-535 1-118 (118)
41 cd04041 C2A_fungal C2 domain f 99.8 3.8E-18 8.3E-23 143.7 11.1 95 260-354 1-99 (111)
42 cd08388 C2A_Synaptotagmin-4-11 99.8 5.9E-18 1.3E-22 146.1 12.5 110 255-364 11-126 (128)
43 cd04010 C2B_RasA3 C2 domain se 99.8 7.6E-18 1.6E-22 148.1 13.0 123 262-386 2-147 (148)
44 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.1E-17 2.4E-22 143.7 13.2 115 379-522 1-125 (125)
45 cd08381 C2B_PI3K_class_II C2 d 99.8 1.1E-17 2.4E-22 143.2 13.1 112 379-521 1-121 (122)
46 cd04043 C2_Munc13_fungal C2 do 99.8 2.2E-17 4.7E-22 142.7 15.1 118 261-390 2-122 (126)
47 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.5E-17 3.3E-22 142.4 13.8 118 262-387 2-120 (121)
48 cd08376 C2B_MCTP_PRT C2 domain 99.8 2.3E-17 5E-22 140.3 14.9 112 419-536 1-115 (116)
49 cd08375 C2_Intersectin C2 doma 99.8 3.3E-17 7.2E-22 142.7 16.1 116 415-535 12-135 (136)
50 cd04014 C2_PKC_epsilon C2 doma 99.8 2E-17 4.3E-22 144.1 14.6 116 259-390 3-130 (132)
51 cd08680 C2_Kibra C2 domain fou 99.8 5.5E-18 1.2E-22 144.6 10.7 108 255-362 9-122 (124)
52 cd04024 C2A_Synaptotagmin-like 99.8 2.1E-17 4.5E-22 143.3 14.5 113 418-535 1-128 (128)
53 cd08400 C2_Ras_p21A1 C2 domain 99.7 4.5E-17 9.7E-22 140.4 16.1 115 417-537 3-124 (126)
54 cd04028 C2B_RIM1alpha C2 domai 99.7 2.5E-17 5.4E-22 143.9 14.5 116 376-524 14-139 (146)
55 cd04042 C2A_MCTP_PRT C2 domain 99.7 3.6E-17 7.9E-22 140.2 15.2 112 420-537 2-121 (121)
56 cd04039 C2_PSD C2 domain prese 99.7 8.7E-18 1.9E-22 140.2 10.7 94 260-356 1-99 (108)
57 cd08392 C2A_SLP-3 C2 domain fi 99.7 9.3E-18 2E-22 144.5 11.1 110 255-364 10-127 (128)
58 cd08379 C2D_MCTP_PRT_plant C2 99.7 2.6E-17 5.7E-22 140.4 13.7 111 419-531 1-125 (126)
59 cd04017 C2D_Ferlin C2 domain f 99.7 4E-17 8.6E-22 142.6 15.1 120 261-391 2-134 (135)
60 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.3E-17 5E-22 141.0 13.1 111 419-536 1-120 (121)
61 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.7E-17 3.6E-22 142.8 12.3 115 379-522 1-125 (125)
62 cd04019 C2C_MCTP_PRT_plant C2 99.7 3.6E-17 7.9E-22 144.7 14.5 114 419-537 1-133 (150)
63 cd08373 C2A_Ferlin C2 domain f 99.7 4.3E-17 9.4E-22 141.0 14.6 117 266-393 2-120 (127)
64 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.2E-17 4.7E-22 142.5 12.6 110 255-364 11-123 (125)
65 cd08382 C2_Smurf-like C2 domai 99.7 3.6E-17 7.8E-22 140.5 13.6 118 262-386 2-122 (123)
66 cd04032 C2_Perforin C2 domain 99.7 2.5E-17 5.4E-22 140.8 12.5 106 245-354 12-119 (127)
67 cd08685 C2_RGS-like C2 domain 99.7 3.1E-17 6.7E-22 139.5 12.5 102 417-521 11-119 (119)
68 cd08389 C2A_Synaptotagmin-14_1 99.7 2.3E-17 5E-22 141.7 11.4 109 255-364 11-122 (124)
69 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.5E-17 9.8E-22 140.2 12.9 115 379-522 1-128 (128)
70 cd04036 C2_cPLA2 C2 domain pre 99.7 7.4E-17 1.6E-21 137.8 13.9 110 420-535 2-117 (119)
71 cd08685 C2_RGS-like C2 domain 99.7 1.8E-17 4E-22 140.9 10.0 105 258-363 10-118 (119)
72 cd04050 C2B_Synaptotagmin-like 99.7 3.4E-17 7.3E-22 136.5 11.0 98 261-364 1-100 (105)
73 cd04022 C2A_MCTP_PRT_plant C2 99.7 6.7E-17 1.5E-21 139.7 13.1 114 419-536 1-126 (127)
74 cd04030 C2C_KIAA1228 C2 domain 99.7 5E-17 1.1E-21 140.7 12.2 110 255-364 11-126 (127)
75 cd08521 C2A_SLP C2 domain firs 99.7 3.6E-17 7.7E-22 140.8 11.2 110 255-364 9-123 (123)
76 cd08387 C2A_Synaptotagmin-8 C2 99.7 8.4E-17 1.8E-21 138.6 13.3 115 379-522 2-123 (124)
77 cd08390 C2A_Synaptotagmin-15-1 99.7 6.8E-17 1.5E-21 139.0 12.7 111 254-364 8-121 (123)
78 cd04014 C2_PKC_epsilon C2 doma 99.7 2.5E-16 5.3E-21 137.2 15.9 113 417-538 3-131 (132)
79 cd08678 C2_C21orf25-like C2 do 99.7 2.1E-16 4.7E-21 136.3 15.2 112 420-537 1-121 (126)
80 cd04031 C2A_RIM1alpha C2 domai 99.7 6.9E-17 1.5E-21 139.4 11.9 109 255-364 11-124 (125)
81 cd08676 C2A_Munc13-like C2 dom 99.7 4.1E-17 9E-22 143.9 10.6 106 254-364 22-153 (153)
82 cd04027 C2B_Munc13 C2 domain s 99.7 1.4E-16 3E-21 137.6 13.6 115 261-386 2-127 (127)
83 cd04040 C2D_Tricalbin-like C2 99.7 1.7E-16 3.6E-21 134.9 13.5 113 262-383 1-113 (115)
84 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.3E-16 5E-21 134.8 14.2 110 420-535 2-121 (121)
85 cd08690 C2_Freud-1 C2 domain f 99.7 4.3E-16 9.2E-21 137.1 15.6 121 263-390 5-138 (155)
86 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.2E-16 4.7E-21 141.7 14.1 128 379-523 1-138 (162)
87 cd08394 C2A_Munc13 C2 domain f 99.7 2.1E-16 4.7E-21 132.9 13.0 98 418-523 2-101 (127)
88 cd08688 C2_KIAA0528-like C2 do 99.7 6.9E-17 1.5E-21 135.8 10.0 101 262-365 1-108 (110)
89 cd04049 C2_putative_Elicitor-r 99.7 8.5E-17 1.8E-21 138.5 10.7 103 260-365 1-107 (124)
90 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.2E-16 4.7E-21 136.0 13.1 115 379-522 2-123 (124)
91 cd04030 C2C_KIAA1228 C2 domain 99.7 2.2E-16 4.8E-21 136.6 13.0 117 378-522 1-127 (127)
92 cd08394 C2A_Munc13 C2 domain f 99.7 1.5E-16 3.3E-21 133.8 11.5 100 259-367 1-102 (127)
93 cd04051 C2_SRC2_like C2 domain 99.7 1.1E-16 2.5E-21 138.0 11.0 115 261-384 1-125 (125)
94 cd04045 C2C_Tricalbin-like C2 99.7 1.2E-16 2.7E-21 136.2 11.0 103 260-366 1-103 (120)
95 cd04050 C2B_Synaptotagmin-like 99.7 2.7E-16 5.8E-21 131.1 12.8 98 419-524 1-103 (105)
96 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.2E-16 2.7E-21 143.3 11.5 108 257-364 24-136 (162)
97 cd04052 C2B_Tricalbin-like C2 99.7 2.5E-16 5.4E-21 132.6 12.7 99 434-538 11-111 (111)
98 cd04044 C2A_Tricalbin-like C2 99.7 3.6E-16 7.9E-21 134.7 13.9 114 418-537 2-124 (124)
99 cd08373 C2A_Ferlin C2 domain f 99.7 5.4E-16 1.2E-20 134.1 14.9 111 424-538 2-118 (127)
100 cd04031 C2A_RIM1alpha C2 domai 99.7 3.2E-16 6.8E-21 135.3 13.3 114 379-522 2-125 (125)
101 cd08406 C2B_Synaptotagmin-12 C 99.7 6.4E-17 1.4E-21 140.5 8.9 109 255-365 10-122 (136)
102 cd08680 C2_Kibra C2 domain fou 99.7 2.2E-16 4.7E-21 134.8 11.9 112 381-521 2-124 (124)
103 cd04015 C2_plant_PLD C2 domain 99.7 6.4E-16 1.4E-20 138.2 15.1 113 417-536 6-158 (158)
104 cd04038 C2_ArfGAP C2 domain pr 99.7 1.9E-16 4E-21 139.0 11.1 93 259-356 1-93 (145)
105 cd04037 C2E_Ferlin C2 domain f 99.7 1.4E-16 3E-21 136.9 10.1 120 261-390 1-120 (124)
106 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 7.8E-16 1.7E-20 132.3 14.1 110 419-533 1-122 (123)
107 cd08407 C2B_Synaptotagmin-13 C 99.7 8.9E-17 1.9E-21 139.5 8.2 109 255-365 10-124 (138)
108 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.3E-15 2.8E-20 130.2 15.3 110 418-535 1-118 (119)
109 cd08407 C2B_Synaptotagmin-13 C 99.7 1.1E-16 2.5E-21 138.8 8.6 115 379-524 1-126 (138)
110 cd08675 C2B_RasGAP C2 domain s 99.7 2.8E-16 6.1E-21 137.1 11.2 108 262-370 1-124 (137)
111 cd04009 C2B_Munc13-like C2 dom 99.7 3.2E-16 7E-21 136.5 11.5 100 256-355 12-119 (133)
112 PLN03008 Phospholipase D delta 99.7 4.4E-16 9.5E-21 166.0 14.6 130 258-395 12-183 (868)
113 cd08691 C2_NEDL1-like C2 domai 99.7 1.3E-15 2.9E-20 132.1 15.0 118 261-386 2-136 (137)
114 cd08395 C2C_Munc13 C2 domain t 99.7 6.3E-16 1.4E-20 130.8 12.6 101 419-523 1-112 (120)
115 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.3E-16 2.8E-21 139.2 8.6 110 255-366 8-121 (133)
116 cd04018 C2C_Ferlin C2 domain t 99.7 4.3E-16 9.3E-21 137.2 11.7 93 261-356 1-108 (151)
117 cd04039 C2_PSD C2 domain prese 99.7 7.2E-16 1.6E-20 128.7 12.2 92 418-513 1-99 (108)
118 cd08521 C2A_SLP C2 domain firs 99.7 9.5E-16 2.1E-20 131.8 12.7 113 380-521 1-123 (123)
119 cd08405 C2B_Synaptotagmin-7 C2 99.7 1.5E-16 3.2E-21 139.4 7.6 109 255-365 10-122 (136)
120 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.7E-15 3.7E-20 130.6 14.2 115 379-522 2-124 (125)
121 cd08388 C2A_Synaptotagmin-4-11 99.7 1.4E-15 3.1E-20 131.2 13.6 116 378-522 1-127 (128)
122 cd04018 C2C_Ferlin C2 domain t 99.7 1.1E-15 2.5E-20 134.5 12.9 106 420-529 2-131 (151)
123 cd08389 C2A_Synaptotagmin-14_1 99.7 1.2E-15 2.6E-20 131.0 12.4 114 379-522 2-123 (124)
124 cd04010 C2B_RasA3 C2 domain se 99.7 7.7E-16 1.7E-20 135.4 11.4 101 419-523 1-122 (148)
125 cd08692 C2B_Tac2-N C2 domain s 99.7 5.2E-16 1.1E-20 132.6 9.9 119 381-529 2-129 (135)
126 cd04011 C2B_Ferlin C2 domain s 99.7 9.1E-16 2E-20 129.3 11.3 98 260-364 4-108 (111)
127 cd08406 C2B_Synaptotagmin-12 C 99.7 3.3E-16 7.1E-21 136.1 8.6 116 380-526 2-126 (136)
128 cd04026 C2_PKC_alpha_gamma C2 99.7 2.2E-15 4.7E-20 131.1 13.8 119 379-529 1-127 (131)
129 cd08688 C2_KIAA0528-like C2 do 99.6 1.3E-15 2.9E-20 128.0 11.7 100 420-523 1-109 (110)
130 KOG1030 Predicted Ca2+-depende 99.6 7.6E-16 1.6E-20 133.2 10.4 92 416-513 4-98 (168)
131 cd04021 C2_E3_ubiquitin_ligase 99.6 2.7E-15 5.9E-20 129.0 13.7 118 260-386 2-124 (125)
132 cd04048 C2A_Copine C2 domain f 99.6 8.4E-16 1.8E-20 131.4 10.4 99 266-364 6-112 (120)
133 cd08404 C2B_Synaptotagmin-4 C2 99.6 2.3E-16 5E-21 138.0 7.0 107 256-364 11-121 (136)
134 cd04013 C2_SynGAP_like C2 doma 99.6 5.2E-15 1.1E-19 128.9 15.2 118 417-538 10-141 (146)
135 cd08402 C2B_Synaptotagmin-1 C2 99.6 4.7E-16 1E-20 136.2 8.8 109 255-365 10-122 (136)
136 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.7E-15 3.6E-20 130.3 11.9 108 255-363 10-122 (123)
137 cd04013 C2_SynGAP_like C2 doma 99.6 4E-15 8.6E-20 129.6 14.2 126 258-391 9-141 (146)
138 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 4.5E-15 9.9E-20 127.0 14.4 109 420-534 2-120 (121)
139 cd08408 C2B_Synaptotagmin-14_1 99.6 1.2E-15 2.7E-20 133.1 10.8 110 254-364 9-123 (138)
140 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 3.3E-15 7.2E-20 130.3 13.5 111 419-535 1-132 (133)
141 cd04052 C2B_Tricalbin-like C2 99.6 1.4E-15 3E-20 128.0 10.6 102 277-391 9-111 (111)
142 cd08692 C2B_Tac2-N C2 domain s 99.6 1.6E-15 3.4E-20 129.7 10.6 109 255-364 9-121 (135)
143 cd08403 C2B_Synaptotagmin-3-5- 99.6 7.4E-16 1.6E-20 134.5 8.9 108 255-364 9-120 (134)
144 cd08410 C2B_Synaptotagmin-17 C 99.6 1.5E-15 3.1E-20 132.6 10.7 98 255-352 9-110 (135)
145 cd04011 C2B_Ferlin C2 domain s 99.6 2.8E-15 6.1E-20 126.3 12.0 102 417-523 3-110 (111)
146 cd08409 C2B_Synaptotagmin-15 C 99.6 8.8E-16 1.9E-20 134.2 9.2 122 379-529 1-130 (137)
147 cd04017 C2D_Ferlin C2 domain f 99.6 7.8E-15 1.7E-19 128.1 14.8 116 419-538 2-134 (135)
148 cd08390 C2A_Synaptotagmin-15-1 99.6 4.8E-15 1E-19 127.4 12.9 114 380-522 1-122 (123)
149 PLN03200 cellulose synthase-in 99.6 1.6E-15 3.5E-20 176.1 12.4 117 416-537 1978-2101(2102)
150 cd08686 C2_ABR C2 domain in th 99.6 6.8E-15 1.5E-19 122.2 12.5 94 262-362 1-105 (118)
151 cd08409 C2B_Synaptotagmin-15 C 99.6 8E-16 1.7E-20 134.5 7.1 111 255-366 10-124 (137)
152 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.8E-15 4E-20 132.4 9.4 121 379-530 1-130 (136)
153 cd04046 C2_Calpain C2 domain p 99.6 1.8E-14 3.9E-19 124.2 15.4 112 417-537 2-123 (126)
154 cd04038 C2_ArfGAP C2 domain pr 99.6 1.3E-14 2.9E-19 127.3 14.5 90 418-513 2-93 (145)
155 cd08404 C2B_Synaptotagmin-4 C2 99.6 3E-15 6.6E-20 131.0 10.0 116 379-525 1-125 (136)
156 cd08690 C2_Freud-1 C2 domain f 99.6 1.7E-14 3.7E-19 127.0 14.6 114 421-537 5-138 (155)
157 cd04045 C2C_Tricalbin-like C2 99.6 1.9E-14 4.2E-19 122.7 14.3 106 418-530 1-110 (120)
158 cd04026 C2_PKC_alpha_gamma C2 99.6 7.5E-15 1.6E-19 127.7 11.4 105 260-365 13-120 (131)
159 cd04043 C2_Munc13_fungal C2 do 99.6 3.2E-14 6.9E-19 122.9 15.2 111 419-536 2-121 (126)
160 cd08405 C2B_Synaptotagmin-7 C2 99.6 3E-15 6.6E-20 131.0 8.6 117 379-526 1-126 (136)
161 cd00276 C2B_Synaptotagmin C2 d 99.6 4.5E-15 9.8E-20 129.7 9.3 120 380-530 1-129 (134)
162 cd08382 C2_Smurf-like C2 domai 99.6 2.2E-14 4.8E-19 123.1 13.3 107 420-533 2-122 (123)
163 cd00276 C2B_Synaptotagmin C2 d 99.6 2.2E-15 4.7E-20 131.7 7.2 110 255-366 9-122 (134)
164 cd04027 C2B_Munc13 C2 domain s 99.6 2.9E-14 6.3E-19 123.1 13.9 111 419-533 2-127 (127)
165 cd08383 C2A_RasGAP C2 domain ( 99.6 3E-14 6.6E-19 121.3 13.8 114 262-388 2-117 (117)
166 cd04047 C2B_Copine C2 domain s 99.6 1.3E-14 2.9E-19 122.0 11.0 95 265-360 5-106 (110)
167 cd08403 C2B_Synaptotagmin-3-5- 99.6 7.4E-15 1.6E-19 128.2 9.7 120 380-530 1-129 (134)
168 KOG0696 Serine/threonine prote 99.6 9.9E-16 2.2E-20 148.9 4.3 107 258-365 178-287 (683)
169 cd00275 C2_PLC_like C2 domain 99.6 4.6E-14 1E-18 122.2 14.4 119 261-388 3-127 (128)
170 cd04032 C2_Perforin C2 domain 99.6 2.4E-14 5.1E-19 122.4 11.6 94 415-512 25-120 (127)
171 cd08408 C2B_Synaptotagmin-14_1 99.6 7.2E-15 1.6E-19 128.3 8.6 120 380-529 2-131 (138)
172 cd04049 C2_putative_Elicitor-r 99.6 6.2E-14 1.4E-18 120.6 14.3 104 418-525 1-110 (124)
173 cd04009 C2B_Munc13-like C2 dom 99.6 3.3E-14 7.2E-19 123.8 12.6 104 379-511 2-118 (133)
174 cd04041 C2A_fungal C2 domain f 99.6 2.6E-14 5.6E-19 120.4 11.3 98 418-522 1-107 (111)
175 cd08410 C2B_Synaptotagmin-17 C 99.6 1.1E-14 2.3E-19 127.1 9.0 116 380-525 1-125 (135)
176 cd08384 C2B_Rabphilin_Doc2 C2 99.6 9.2E-15 2E-19 127.5 8.4 105 416-526 11-124 (133)
177 cd08383 C2A_RasGAP C2 domain ( 99.6 8.2E-14 1.8E-18 118.6 13.5 109 420-535 2-117 (117)
178 cd04051 C2_SRC2_like C2 domain 99.5 4.8E-14 1E-18 121.6 11.5 108 420-531 2-125 (125)
179 cd08675 C2B_RasGAP C2 domain s 99.5 8.8E-14 1.9E-18 121.4 11.4 102 420-525 1-122 (137)
180 PF00168 C2: C2 domain; Inter 99.5 5.9E-14 1.3E-18 111.8 9.5 85 262-346 1-85 (85)
181 PLN03008 Phospholipase D delta 99.5 1.3E-13 2.8E-18 147.3 14.5 98 434-538 75-179 (868)
182 PLN03200 cellulose synthase-in 99.5 4.8E-14 1E-18 164.1 11.6 122 256-390 1976-2101(2102)
183 cd04021 C2_E3_ubiquitin_ligase 99.5 3.6E-13 7.8E-18 115.8 14.3 108 419-533 3-124 (125)
184 KOG1013 Synaptic vesicle prote 99.5 1.1E-14 2.4E-19 137.6 5.1 224 255-507 88-327 (362)
185 cd08676 C2A_Munc13-like C2 dom 99.5 2.9E-13 6.2E-18 119.5 12.2 98 414-521 24-153 (153)
186 cd04035 C2A_Rabphilin_Doc2 C2 99.5 3.8E-13 8.3E-18 115.5 12.8 106 379-514 1-116 (123)
187 cd04040 C2D_Tricalbin-like C2 99.5 3.4E-13 7.3E-18 114.5 12.2 100 420-524 1-104 (115)
188 cd08691 C2_NEDL1-like C2 domai 99.5 7.1E-13 1.5E-17 115.1 14.1 111 419-533 2-136 (137)
189 KOG0696 Serine/threonine prote 99.5 3.8E-14 8.2E-19 138.0 6.3 121 376-528 165-293 (683)
190 cd08686 C2_ABR C2 domain in th 99.5 1.4E-12 3E-17 108.4 13.4 107 420-534 1-117 (118)
191 cd04037 C2E_Ferlin C2 domain f 99.4 8.1E-13 1.8E-17 113.5 10.2 88 419-511 1-93 (124)
192 KOG1028 Ca2+-dependent phospho 99.4 2.2E-12 4.8E-17 132.8 14.8 135 375-538 149-296 (421)
193 cd00275 C2_PLC_like C2 domain 99.4 5.6E-12 1.2E-16 109.1 14.6 108 419-535 3-127 (128)
194 cd04048 C2A_Copine C2 domain f 99.4 1.9E-12 4.1E-17 110.6 11.4 100 423-523 5-114 (120)
195 KOG1011 Neurotransmitter relea 99.4 1.4E-12 3E-17 132.3 9.0 125 255-390 290-425 (1283)
196 cd08374 C2F_Ferlin C2 domain s 99.4 6.4E-12 1.4E-16 107.5 11.0 95 262-356 2-125 (133)
197 smart00239 C2 Protein kinase C 99.3 1.4E-11 3E-16 101.1 10.8 95 262-356 2-96 (101)
198 KOG1326 Membrane-associated pr 99.3 9.6E-12 2.1E-16 132.6 10.9 91 260-351 613-703 (1105)
199 cd04047 C2B_Copine C2 domain s 99.3 3.3E-11 7.1E-16 101.3 11.2 93 422-521 4-108 (110)
200 cd00030 C2 C2 domain. The C2 d 99.3 3.4E-11 7.3E-16 98.5 10.7 99 262-362 1-100 (102)
201 PF10296 DUF2404: Putative int 99.2 4.4E-11 9.6E-16 96.1 9.5 85 75-160 1-89 (91)
202 PF00168 C2: C2 domain; Inter 99.2 5.3E-11 1.2E-15 94.6 8.6 79 420-503 1-85 (85)
203 PLN02270 phospholipase D alpha 99.2 2.2E-10 4.7E-15 123.0 14.4 115 417-538 7-150 (808)
204 PLN02270 phospholipase D alpha 99.2 2.4E-10 5.2E-15 122.7 13.8 129 258-394 6-153 (808)
205 PLN02223 phosphoinositide phos 99.2 1.9E-10 4.1E-15 118.7 11.6 98 259-356 408-512 (537)
206 KOG1011 Neurotransmitter relea 99.2 5.9E-11 1.3E-15 120.7 7.6 117 411-534 288-422 (1283)
207 PLN02952 phosphoinositide phos 99.1 1.5E-09 3.3E-14 114.5 14.3 104 259-365 469-580 (599)
208 cd00030 C2 C2 domain. The C2 d 99.1 1.7E-09 3.6E-14 88.3 11.5 97 420-521 1-102 (102)
209 cd08374 C2F_Ferlin C2 domain s 99.1 8.3E-10 1.8E-14 94.6 9.5 90 420-513 2-125 (133)
210 KOG1326 Membrane-associated pr 99.1 7.8E-11 1.7E-15 125.8 3.6 85 419-508 614-703 (1105)
211 smart00239 C2 Protein kinase C 99.0 2.5E-09 5.4E-14 87.5 11.1 89 420-513 2-96 (101)
212 KOG1328 Synaptic vesicle prote 99.0 1.7E-10 3.6E-15 119.0 3.5 134 253-392 107-304 (1103)
213 PLN02230 phosphoinositide phos 99.0 2.3E-09 5.1E-14 112.9 10.3 99 259-357 468-574 (598)
214 KOG2059 Ras GTPase-activating 98.9 2.5E-09 5.4E-14 110.7 9.5 112 419-537 6-126 (800)
215 KOG0169 Phosphoinositide-speci 98.9 7.4E-09 1.6E-13 109.1 11.6 98 261-358 617-721 (746)
216 PLN02228 Phosphoinositide phos 98.9 1.6E-08 3.4E-13 106.3 13.8 123 260-391 431-563 (567)
217 PLN02222 phosphoinositide phos 98.9 7.2E-09 1.6E-13 109.1 11.1 99 259-357 451-557 (581)
218 PLN02223 phosphoinositide phos 98.9 2.9E-08 6.3E-13 102.8 14.7 112 416-535 407-536 (537)
219 cd08689 C2_fungal_Pkc1p C2 dom 98.9 4.6E-09 1E-13 84.3 6.9 86 262-355 1-89 (109)
220 KOG1327 Copine [Signal transdu 98.8 6.4E-08 1.4E-12 99.3 13.9 179 296-511 42-236 (529)
221 KOG1328 Synaptic vesicle prote 98.8 3.2E-09 6.9E-14 109.8 3.6 101 254-354 941-1049(1103)
222 PLN02952 phosphoinositide phos 98.8 1.2E-07 2.6E-12 100.3 14.7 111 417-535 469-598 (599)
223 KOG1264 Phospholipase C [Lipid 98.7 3.7E-08 8.1E-13 103.2 9.8 127 260-395 1065-1195(1267)
224 KOG1031 Predicted Ca2+-depende 98.7 3.4E-08 7.5E-13 99.8 8.1 120 260-389 3-136 (1169)
225 PLN02222 phosphoinositide phos 98.6 4.6E-07 9.9E-12 95.7 14.5 111 417-535 451-580 (581)
226 PLN02352 phospholipase D epsil 98.6 2.5E-07 5.4E-12 99.6 12.2 122 257-394 7-135 (758)
227 PLN02230 phosphoinositide phos 98.6 4.1E-07 8.8E-12 96.2 13.5 111 417-535 468-597 (598)
228 cd08689 C2_fungal_Pkc1p C2 dom 98.6 2.1E-07 4.5E-12 74.9 8.6 82 420-512 1-89 (109)
229 PLN02352 phospholipase D epsil 98.6 3.4E-07 7.4E-12 98.6 13.0 110 416-538 8-132 (758)
230 KOG0905 Phosphoinositide 3-kin 98.5 1.5E-07 3.2E-12 102.5 7.2 117 376-523 1509-1635(1639)
231 KOG1031 Predicted Ca2+-depende 98.5 3.9E-07 8.5E-12 92.3 9.3 114 417-534 2-134 (1169)
232 PLN02228 Phosphoinositide phos 98.5 1.9E-06 4E-11 90.9 14.0 113 417-537 430-562 (567)
233 KOG0169 Phosphoinositide-speci 98.4 2.5E-06 5.4E-11 90.4 13.0 111 419-537 617-745 (746)
234 KOG1264 Phospholipase C [Lipid 98.3 6.8E-06 1.5E-10 86.7 11.8 99 417-523 1064-1171(1267)
235 cd08683 C2_C2cd3 C2 domain fou 98.3 2.6E-06 5.7E-11 70.6 6.6 102 420-521 1-143 (143)
236 KOG0905 Phosphoinositide 3-kin 98.2 7.7E-07 1.7E-11 97.1 4.5 106 259-364 1523-1633(1639)
237 KOG3532 Predicted protein kina 98.2 5.1E-06 1.1E-10 86.0 9.8 225 58-291 81-358 (1051)
238 KOG1013 Synaptic vesicle prote 98.1 3.7E-06 8.1E-11 80.5 5.9 96 254-349 227-326 (362)
239 cd08684 C2A_Tac2-N C2 domain f 98.1 3.3E-06 7.1E-11 64.9 3.1 91 263-355 2-95 (103)
240 PF12416 DUF3668: Cep120 prote 97.9 0.0028 6.1E-08 63.2 21.7 231 262-511 2-295 (340)
241 PLN02964 phosphatidylserine de 97.8 3E-05 6.5E-10 83.3 5.8 91 255-355 49-140 (644)
242 KOG1327 Copine [Signal transdu 97.8 4.2E-05 9.1E-10 79.0 6.3 88 266-354 142-236 (529)
243 KOG3837 Uncharacterized conser 97.7 5.9E-05 1.3E-09 74.3 5.2 118 416-536 365-503 (523)
244 cd08684 C2A_Tac2-N C2 domain f 97.6 6.8E-05 1.5E-09 57.8 3.4 91 422-519 3-101 (103)
245 cd08683 C2_C2cd3 C2 domain fou 97.4 0.00012 2.6E-09 61.0 3.6 101 262-362 1-141 (143)
246 PLN02964 phosphatidylserine de 97.3 0.00033 7.2E-09 75.4 6.5 100 416-524 52-154 (644)
247 KOG2060 Rab3 effector RIM1 and 97.3 0.00037 8.1E-09 68.2 5.2 104 416-524 267-380 (405)
248 KOG2060 Rab3 effector RIM1 and 97.2 0.00036 7.7E-09 68.4 3.8 109 257-366 266-379 (405)
249 PF15627 CEP76-C2: CEP76 C2 do 97.0 0.017 3.8E-07 50.6 12.5 119 416-538 7-152 (156)
250 KOG3837 Uncharacterized conser 97.0 0.00072 1.6E-08 66.9 4.3 127 257-390 364-504 (523)
251 PF12416 DUF3668: Cep120 prote 96.9 0.0082 1.8E-07 59.9 11.4 112 420-534 2-130 (340)
252 cd08398 C2_PI3K_class_I_alpha 96.7 0.047 1E-06 48.5 13.0 89 260-352 8-106 (158)
253 PF10358 NT-C2: N-terminal C2 96.2 0.2 4.3E-06 43.7 14.4 124 258-393 5-139 (143)
254 cd08398 C2_PI3K_class_I_alpha 95.9 0.074 1.6E-06 47.3 9.7 91 418-509 8-106 (158)
255 KOG1265 Phospholipase C [Lipid 95.5 0.024 5.3E-07 61.4 6.0 90 259-356 702-798 (1189)
256 PF15627 CEP76-C2: CEP76 C2 do 95.4 0.22 4.7E-06 43.8 10.8 128 258-392 7-153 (156)
257 KOG1452 Predicted Rho GTPase-a 95.4 0.039 8.4E-07 53.0 6.4 118 256-389 47-167 (442)
258 cd08693 C2_PI3K_class_I_beta_d 95.3 0.12 2.6E-06 46.8 9.3 91 419-509 9-120 (173)
259 cd08693 C2_PI3K_class_I_beta_d 95.3 0.11 2.4E-06 47.0 8.9 90 260-351 8-119 (173)
260 cd08687 C2_PKN-like C2 domain 95.2 0.21 4.5E-06 39.3 8.6 84 281-388 9-92 (98)
261 PF10358 NT-C2: N-terminal C2 95.1 0.79 1.7E-05 39.9 13.7 115 418-537 7-136 (143)
262 cd08380 C2_PI3K_like C2 domain 95.1 0.13 2.9E-06 45.7 8.7 93 260-353 8-108 (156)
263 KOG1265 Phospholipase C [Lipid 94.8 0.054 1.2E-06 58.9 6.3 88 416-512 701-797 (1189)
264 cd08380 C2_PI3K_like C2 domain 94.2 0.32 6.9E-06 43.3 8.9 89 419-509 9-107 (156)
265 cd04012 C2A_PI3K_class_II C2 d 93.8 0.25 5.4E-06 44.7 7.6 94 259-352 7-119 (171)
266 cd08399 C2_PI3K_class_I_gamma 93.6 0.46 1E-05 43.0 8.7 73 261-334 11-88 (178)
267 PF15625 CC2D2AN-C2: CC2D2A N- 93.4 1.2 2.5E-05 40.2 11.2 72 280-355 36-109 (168)
268 cd08397 C2_PI3K_class_III C2 d 93.4 0.24 5.3E-06 44.1 6.6 74 279-352 28-107 (159)
269 PF00792 PI3K_C2: Phosphoinosi 93.2 0.44 9.6E-06 41.6 7.9 64 289-352 12-85 (142)
270 cd08687 C2_PKN-like C2 domain 93.1 1.4 3.1E-05 34.7 9.5 83 436-535 9-92 (98)
271 cd08397 C2_PI3K_class_III C2 d 92.1 0.67 1.5E-05 41.3 7.7 71 435-509 29-107 (159)
272 PF15625 CC2D2AN-C2: CC2D2A N- 92.0 2.2 4.7E-05 38.4 10.9 96 435-537 36-162 (168)
273 PF00792 PI3K_C2: Phosphoinosi 91.2 1.5 3.2E-05 38.3 8.9 56 450-509 23-85 (142)
274 cd08399 C2_PI3K_class_I_gamma 90.3 2.5 5.5E-05 38.3 9.5 91 419-509 11-122 (178)
275 PTZ00447 apical membrane antig 89.5 3.3 7.2E-05 40.7 10.0 109 416-533 56-170 (508)
276 cd08695 C2_Dock-B C2 domains f 89.3 3.7 8E-05 37.5 9.8 56 295-350 53-112 (189)
277 KOG1452 Predicted Rho GTPase-a 87.9 1.2 2.6E-05 43.2 5.8 111 415-535 48-166 (442)
278 cd04012 C2A_PI3K_class_II C2 d 87.9 3 6.4E-05 37.7 8.3 93 417-509 7-119 (171)
279 smart00142 PI3K_C2 Phosphoinos 87.6 3.5 7.6E-05 33.5 7.8 73 262-334 13-91 (100)
280 PF14429 DOCK-C2: C2 domain in 87.5 3.4 7.5E-05 37.8 8.6 56 296-351 60-120 (184)
281 cd08694 C2_Dock-A C2 domains f 86.4 7 0.00015 35.8 9.7 56 295-350 53-114 (196)
282 PF11618 DUF3250: Protein of u 81.6 6.1 0.00013 32.6 6.6 95 284-389 2-105 (107)
283 PF11618 DUF3250: Protein of u 80.5 9.9 0.00021 31.3 7.5 93 439-537 2-106 (107)
284 PF14429 DOCK-C2: C2 domain in 80.3 9.2 0.0002 34.9 8.2 60 448-508 60-120 (184)
285 KOG1329 Phospholipase D1 [Lipi 79.8 4.5 9.8E-05 45.0 6.8 107 281-394 138-245 (887)
286 KOG1329 Phospholipase D1 [Lipi 77.1 3.3 7.2E-05 46.1 4.8 97 435-537 137-241 (887)
287 smart00142 PI3K_C2 Phosphoinos 74.7 19 0.00042 29.1 7.7 68 420-487 13-91 (100)
288 cd08697 C2_Dock-D C2 domains f 73.6 36 0.00078 31.1 9.8 56 296-351 57-123 (185)
289 cd08679 C2_DOCK180_related C2 72.1 10 0.00023 34.4 6.1 53 299-351 56-115 (178)
290 cd08695 C2_Dock-B C2 domains f 70.6 16 0.00035 33.4 6.9 59 448-508 54-113 (189)
291 KOG2238 Uncharacterized conser 69.2 1.7 3.6E-05 47.4 0.3 91 69-160 334-428 (795)
292 cd08696 C2_Dock-C C2 domains f 67.6 16 0.00035 33.2 6.2 57 295-351 54-118 (179)
293 cd08694 C2_Dock-A C2 domains f 67.5 22 0.00047 32.7 7.0 60 448-507 54-114 (196)
294 PF07162 B9-C2: Ciliary basal 62.2 1.2E+02 0.0026 27.2 12.7 80 421-507 5-102 (168)
295 KOG4269 Rac GTPase-activating 55.9 11 0.00025 41.9 3.5 74 254-334 753-828 (1112)
296 cd08696 C2_Dock-C C2 domains f 55.4 57 0.0012 29.6 7.5 62 447-508 54-118 (179)
297 KOG0694 Serine/threonine prote 50.0 4.3 9.3E-05 43.9 -0.7 69 280-352 27-95 (694)
298 cd08679 C2_DOCK180_related C2 48.7 57 0.0012 29.5 6.5 58 451-508 56-115 (178)
299 cd08697 C2_Dock-D C2 domains f 46.0 96 0.0021 28.3 7.4 62 447-508 56-123 (185)
300 KOG4092 Mitochondrial F1F0-ATP 42.6 11 0.00024 29.7 0.7 45 46-90 26-70 (108)
301 KOG4269 Rac GTPase-activating 41.5 21 0.00046 39.9 2.8 91 414-509 755-856 (1112)
302 PTZ00447 apical membrane antig 40.0 2.9E+02 0.0064 27.7 10.0 111 259-387 57-171 (508)
303 KOG0904 Phosphatidylinositol 3 39.7 1.2E+02 0.0027 34.2 8.2 71 260-333 343-421 (1076)
304 KOG0904 Phosphatidylinositol 3 39.0 95 0.002 35.1 7.2 94 417-510 342-457 (1076)
305 KOG4027 Uncharacterized conser 38.4 2E+02 0.0044 25.3 7.7 46 304-349 59-108 (187)
306 PF14356 DUF4403: Domain of un 36.9 3.8E+02 0.0083 28.0 11.4 88 120-242 280-367 (427)
307 PF10206 WRW: Mitochondrial F1 36.0 22 0.00047 29.0 1.4 36 55-90 35-70 (104)
308 PF08693 SKG6: Transmembrane a 35.4 21 0.00046 23.5 1.1 13 21-33 26-38 (40)
309 PF06219 DUF1005: Protein of u 32.5 4.9E+02 0.011 27.0 10.5 64 324-390 95-168 (460)
310 PF14909 SPATA6: Spermatogenes 29.0 2.2E+02 0.0048 24.6 6.5 86 420-510 4-100 (140)
311 PF07162 B9-C2: Ciliary basal 26.5 4.6E+02 0.01 23.3 10.8 96 263-366 5-116 (168)
312 PF15102 TMEM154: TMEM154 prot 26.4 73 0.0016 27.7 3.1 12 27-38 78-89 (146)
313 KOG0694 Serine/threonine prote 26.1 29 0.00062 37.9 0.8 50 435-487 27-77 (694)
314 PF10409 PTEN_C2: C2 domain of 25.4 4.1E+02 0.0089 22.4 9.0 90 261-353 5-98 (134)
315 PF00558 Vpu: Vpu protein; In 22.8 19 0.00041 27.9 -0.9 27 6-32 5-31 (81)
316 KOG2419 Phosphatidylserine dec 22.3 24 0.00051 38.0 -0.7 75 258-336 278-357 (975)
317 PF10409 PTEN_C2: C2 domain of 20.8 5.1E+02 0.011 21.8 8.0 85 422-510 11-98 (134)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.3e-67 Score=560.66 Aligned_cols=495 Identities=26% Similarity=0.508 Sum_probs=415.8
Q ss_pred cccchhhhccccchhhhhHHHhheeeeEEEecCCCCCccccccc--ccCHHHHHhhcCCCCCceeCCCCcchHHHHHHHH
Q 009307 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLV--ERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLE 79 (538)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~w~~~~~~E~~~WlN~~l~ 79 (538)
|++||++|++||+++.++++++.+ +++|++..++.++.+|.+. ++..++++ .|+|++||||.+|+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~ 231 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ 231 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence 578999999999998887776655 5667776555555666653 22233333 79999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEeeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEe---------
Q 009307 80 LMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWA--------- 149 (538)
Q Consensus 80 ~~W~~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~l~~~~~~~--------- 149 (538)
++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. .+|.+.||++++|.
T Consensus 232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 99999999999999999999999999999 99999999999999999999999985 77899999999995
Q ss_pred ------CCCCeEEEEEE---ec-eeeEEEEEeEEEEEEEEEEEecCCCCCCeeEEEEEEcCCCCeEEEEEEEcc-----c
Q 009307 150 ------ANPNVTIGVKA---FG-LKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----A 214 (538)
Q Consensus 150 ------~~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g-----~ 214 (538)
-|++|.|.++. +| +++||.|+|+.|.|++||+++ |++.+|++..+.++|++.|++||.++|+| .
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence 35678888865 45 899999999999999999998 99999999999999999999999999986 4
Q ss_pred cccccchHHHHHHHHHHHHHhhhcccCccccccccCCCcc-CCCCeeEEEEEEEeecCCccCC--CCCCCCcEEEEEEcC
Q 009307 215 DLMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKD--LLGASDPYVKLKITE 291 (538)
Q Consensus 215 ~~~~~P~l~~~i~~~i~~~l~~~~v~P~~~~~pi~~~~~~-~~~~~g~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~ 291 (538)
|++++|||.+||+++|...+++|+++|+.+++++...... ...+.|+|.|+|.+|++|...+ ..+..|||+++...+
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~ 469 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD 469 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence 7999999999999999999999999999999988643332 6779999999999999999988 578999999999765
Q ss_pred ccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEE-EEeccccccc
Q 009307 292 DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK-TLDLLKNMDL 370 (538)
Q Consensus 292 ~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~l~~~~~~ 370 (538)
... .||++.+++.||+|||+|++.+... ++.|.++|||.+...+|+.+|+..++|..|........ ...+.
T Consensus 470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~----- 541 (1227)
T COG5038 470 RVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL----- 541 (1227)
T ss_pred ccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-----
Confidence 543 4999999999999999999999765 78999999999999999999999999999987754433 22322
Q ss_pred CCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC-C-CCCcEEEEEECCeE
Q 009307 371 NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-H-HTNPYARILFRGEE 448 (538)
Q Consensus 371 ~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~-~-~~dpyv~v~~~~~~ 448 (538)
.+.+..|+|+.+++|+|..++........ .+....++|++.+++.++++|... + ....+++++.+.+.
T Consensus 542 ---~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-------e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke 611 (1227)
T COG5038 542 ---RNTKNVGRLTYDLRFFPVIEDKKELKGSV-------EPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKE 611 (1227)
T ss_pred ---ccCccceEEEEeeeeecccCCcccccccc-------CCcccCCcceeEEEeeccccccCccccccceeEEEEecceE
Confidence 25788999999999999877643222110 011223579999999999999763 2 23345899998876
Q ss_pred E-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccc-eeceEEEeCCCCC
Q 009307 449 R-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDSKN 526 (538)
Q Consensus 449 ~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~ 526 (538)
. .|+..+.+.+|.||+.+...+.+. ....+.+.++|... .+.+|+...+|.+++... .-..||++. +++
T Consensus 612 V~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~k 682 (1227)
T COG5038 612 VYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDLIDRTLDTFLVFPLR-NPK 682 (1227)
T ss_pred EeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHhhhccccceEEEEcC-CCc
Confidence 5 568999999999999999999875 55678888888742 479999999999998865 345799987 679
Q ss_pred cEEEEEEEEEeC
Q 009307 527 GRIQIELQWRTA 538 (538)
Q Consensus 527 G~I~l~~~w~p~ 538 (538)
|+|.++.-|+|.
T Consensus 683 g~I~~t~~W~Pi 694 (1227)
T COG5038 683 GRIFITNYWKPI 694 (1227)
T ss_pred ceEEEEecccee
Confidence 999999999994
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-30 Score=263.13 Aligned_cols=222 Identities=29% Similarity=0.474 Sum_probs=190.2
Q ss_pred cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEEE
Q 009307 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY 331 (538)
Q Consensus 254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 331 (538)
.++.....|.|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++++||.|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 4667789999999999999999966789999999999988778899999999999999999999653 34789999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCC
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 411 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 411 (538)
|+|++++|++||++.++|..+........|.++....... ....|+|.++++|.|.
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~-------------------- 296 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT-------------------- 296 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC--------------------
Confidence 9999999999999999999999887778888886543322 2223899999999973
Q ss_pred CCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEE
Q 009307 412 NTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVE 482 (538)
Q Consensus 412 ~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~-~l~v~ 482 (538)
.|.|+|.|.+|+||... +..||||++++.. ++++|.+.+++.||+|||+|.|.+......+ .+.++
T Consensus 297 -----~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 297 -----AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred -----CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 78999999999999863 5789999999843 2459999999999999999999887543333 79999
Q ss_pred EEEcccCccCCCCCceeEEEEEechh
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSD 508 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~ 508 (538)
|||++. ++.+++||++.+....
T Consensus 372 V~d~d~----~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDT----LGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEccc----ccccceeeEEEecCCC
Confidence 999987 6788899999998875
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-22 Score=207.17 Aligned_cols=243 Identities=19% Similarity=0.295 Sum_probs=194.1
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (538)
...|.|+|.+|+||+..+..|.+||||.|.++.+.. .||.++.+++.|.|.|+|+|.+... -+.|.|-|||+| +++
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~ 79 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKR 79 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccc
Confidence 356899999999999999999999999999998765 6899999999999999999999654 688999999999 999
Q ss_pred CcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCce
Q 009307 339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 418 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g 418 (538)
|+.||++.|.-.+|....+.+.|+.|.+ .++ +....|++++++.+.+...+.
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~~----------------------- 131 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQSS----------------------- 131 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCCC-----------------------
Confidence 9999999999999988778888888743 333 477999999999998653321
Q ss_pred EEEEEEEeeecCCC--CCCCCcEEEEEECCeE----EEeeeecCCCCCcccceEEEEecCC-----------C---CCCe
Q 009307 419 LLVVIVHEAQDVEG--KHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP-----------P---TNDR 478 (538)
Q Consensus 419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~----~kT~v~~~t~nP~w~e~f~f~v~~~-----------~---~~~~ 478 (538)
-+...+.+++++.+ ++.+|||+++...+.. .+|.+.++|.+|.|+|.|.|.+... + ..-.
T Consensus 132 ~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ 211 (800)
T KOG2059|consen 132 GLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLE 211 (800)
T ss_pred cchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceee
Confidence 12233344444432 3569999999997644 4999999999999999999988743 0 1226
Q ss_pred EEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC----------CcEEEEEEEEE
Q 009307 479 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK----------NGRIQIELQWR 536 (538)
Q Consensus 479 l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~----------~G~I~l~~~w~ 536 (538)
|.+++|+.... ..++.++|++.+++...........||.|...+ -|.+++.+.|.
T Consensus 212 irv~lW~~~~~---~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 212 IRVDLWNDLNL---VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred EEEeeccchhh---hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 88889985432 445899999999999988666778999996321 38888888764
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.2e-21 Score=166.11 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=101.6
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCC-CCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (538)
.|.|.|+|++|++++..+ .|++||||++.+++++ .+|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 7999999999998765 48999865 89999999999999764 468999999999999
Q ss_pred CCcccEEEEEeCc-cCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 338 KHDKMGMNVVPLK-ELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 338 ~d~~lG~~~i~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+|++||++.+++. .+..++....|++|... +..+..|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777777888887431 124578999999987
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=2.9e-20 Score=159.39 Aligned_cols=121 Identities=29% Similarity=0.487 Sum_probs=106.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (538)
.|+|+|++|++|+..|..|.+||||++++++.. ..+|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999998633 36899999999999999999998765 578999999999999999
Q ss_pred ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+||++.++++++..+...+.|++|... ++.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999998888899988431 12467899999999865
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.6e-20 Score=160.85 Aligned_cols=119 Identities=27% Similarity=0.481 Sum_probs=100.6
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC-----CCCCEEEEEEEeccCC
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-----PESQAVELAVYDWEQV 336 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~v~d~~~~ 336 (538)
++|+|++|+||+.++..|.+||||++++++.+ .+|++++++.||+|||+|.|.+.. .....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999888999999999998654 589999999999999999999976 3467899999999999
Q ss_pred CCCcccEEEEEeCccCC--CCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009307 337 GKHDKMGMNVVPLKELT--PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
++|++||++.++++++. .+.....|++|.... .+..+..|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence 99999999999999987 455667888875321 123467899999873
No 7
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=7.8e-20 Score=159.27 Aligned_cols=121 Identities=30% Similarity=0.496 Sum_probs=103.2
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 334 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (538)
.....|.|+|+|++|++|+..|..|.+||||+++++... .+|++++++.||.|||+|.|.+.+...+.|.++|||++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 456789999999999999999988999999999997654 59999999999999999999998776789999999999
Q ss_pred CCCCCcccEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 335 QVGKHDKMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
..++|++||++.+++.++.... ....++.+ ..+.+|+|++++++
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999998622 11223332 25678999999986
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=3.9e-20 Score=157.99 Aligned_cols=117 Identities=30% Similarity=0.443 Sum_probs=100.5
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (538)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 6899999999999999988999999999998754 4788765 5799999999999998766789999999998776
Q ss_pred CcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
|++||++.+++.++..+.....|+++.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999877666677777643 24678999999986
No 9
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=8.7e-20 Score=155.32 Aligned_cols=115 Identities=30% Similarity=0.510 Sum_probs=103.0
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (538)
+++|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999997654 58999999999999999999998766789999999999989999
Q ss_pred ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+||++.+++.++..+.....|++|. ...|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999888889999873 2369999998774
No 10
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=1.1e-19 Score=155.35 Aligned_cols=117 Identities=31% Similarity=0.508 Sum_probs=102.1
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433456999999999999999999999766567899999999988 8999
Q ss_pred cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
||++.++++++..+.....|+++. .+..|+|++++.+.
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEee
Confidence 999999999999988888899873 34589999888653
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=8.9e-20 Score=155.62 Aligned_cols=116 Identities=28% Similarity=0.411 Sum_probs=98.9
Q ss_pred EEEEEEEeecC---CccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307 261 ILHVKVVKAMN---LKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (538)
Q Consensus 261 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (538)
.|+|+|++|+| |+.+|..|.+||||++++++++ .||+++++++||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence 48999999999 8888989999999999998765 4899999999999999999999875 468999999999863
Q ss_pred ------CCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEE
Q 009307 338 ------KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV 384 (538)
Q Consensus 338 ------~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (538)
+|++||++.++++.+..+.....|++|... + +...+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999988887888888532 1 123557788764
No 12
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=3.4e-20 Score=159.96 Aligned_cols=100 Identities=46% Similarity=0.736 Sum_probs=92.6
Q ss_pred CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (538)
Q Consensus 257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (538)
...|.|+|+|++|.||..+|..+++||||++.+++++. +|+++++++||+|||+|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46899999999999999999889999999999999885 899999999999999999999988 78999999999999
Q ss_pred CCCcccEEEEEeCccCCCCCCeEE
Q 009307 337 GKHDKMGMNVVPLKELTPEEPSVK 360 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++||+||.++|+|..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987654443
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=3.9e-20 Score=154.06 Aligned_cols=106 Identities=18% Similarity=0.325 Sum_probs=89.5
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC-ccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (538)
+....|.|+|+|++|+||+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+... ....|.++||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4556899999999999998 3 36799999999975 344567999999999999999999998743 3678999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCCCeEEEEe
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 363 (538)
|+|+++++++||++.++++++..+.+.+.|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999998866555555543
No 14
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.4e-19 Score=153.09 Aligned_cols=107 Identities=26% Similarity=0.418 Sum_probs=92.0
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcC----ccCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEEEEecc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITE----DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWE 334 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~ 334 (538)
|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++++||+|||+|.|.+... ....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999888 49999999999842 333456899999999999999999999743 3467999999999
Q ss_pred CCCCCcccEEEEEeCccCCCCCCeEEEEecccccc
Q 009307 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 369 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~ 369 (538)
..++|++||++.++++++..++....|++|.+...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 88889999999999999999988889999865443
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=2e-19 Score=152.51 Aligned_cols=112 Identities=23% Similarity=0.441 Sum_probs=97.4
Q ss_pred eEEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307 418 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|+|+|++|++++.. +.+||||++.+++++.+|+++.+ +.||+|||.|.|.+.+. ...+.|+|||++. ++
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----Cc
Confidence 7899999999988653 68999999999999999999876 89999999999999753 3579999999986 67
Q ss_pred CCceeEEEEEech-hhcccceeceEEEeCC----CCCcEEEEEEEE
Q 009307 495 PKETLGYIDINLS-DVVSNKRINEKYHLID----SKNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~----~~~G~I~l~~~w 535 (538)
+|++||++.+++. .+..+...+.||+|.+ ...|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 8999999999996 4666666899999986 346999999976
No 16
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=185.87 Aligned_cols=310 Identities=23% Similarity=0.390 Sum_probs=222.8
Q ss_pred chHHHHHHHHHHHHHhhhcccCcc-------ccc---cccC----CCc-cCCCCeeEEEEEEEeecCCccCCCCCCCCcE
Q 009307 220 PGLYRFVQELIKTQVANMYLWPKT-------LEV---PILD----PSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPY 284 (538)
Q Consensus 220 P~l~~~i~~~i~~~l~~~~v~P~~-------~~~---pi~~----~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpy 284 (538)
+....=+.+.|.......++.|.+ ++. |+-. .+. .+..+.|.++|+|..|.+|......+++|||
T Consensus 656 ~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPy 735 (1227)
T COG5038 656 ATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPY 735 (1227)
T ss_pred ccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccc
Confidence 444444556666666777777765 111 4432 112 4778999999999999999987778999999
Q ss_pred EEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCe---EEE
Q 009307 285 VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS---VKT 361 (538)
Q Consensus 285 v~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~---~~~ 361 (538)
+++.+++.. ++||-....+.||.|||..+..+..+ .+.+.++++|++..+.|..+|++.++++++...... ...
T Consensus 736 a~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~ 812 (1227)
T COG5038 736 ATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMET 812 (1227)
T ss_pred eEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEe
Confidence 999998744 47898889999999999999999876 678999999999999999999999999998763221 112
Q ss_pred EecccccccCCCCCCccccEEEEEEEEEeccCCCCC------------------------C-------------------
Q 009307 362 LDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLP------------------------K------------------- 398 (538)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~------------------------~------------------- 398 (538)
..-.....+....+....|++.+.+.|+|..-.-.. +
T Consensus 813 i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~ 892 (1227)
T COG5038 813 IDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVE 892 (1227)
T ss_pred ecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeec
Confidence 111111111001135678999999999985321000 0
Q ss_pred ---c---------c-------------------------------cc--------cc----c------------------
Q 009307 399 ---S---------F-------------------------------EE--------SQ----T------------------ 405 (538)
Q Consensus 399 ---~---------~-------------------------------~~--------~~----~------------------ 405 (538)
+ . ++ +. .
T Consensus 893 ~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~ 972 (1227)
T COG5038 893 ELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSE 972 (1227)
T ss_pred cccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccce
Confidence 0 0 00 00 0
Q ss_pred ----ccc-CCCC--------------------------------------------------CCCCceEEEEEEEeeecC
Q 009307 406 ----VQK-APEN--------------------------------------------------TPAGGGLLVVIVHEAQDV 430 (538)
Q Consensus 406 ----~~~-~~~~--------------------------------------------------~~~~~g~L~v~v~~a~~L 430 (538)
..+ ++.. .-.++|.|.|.+.+|.||
T Consensus 973 ~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl 1052 (1227)
T COG5038 973 TTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENL 1052 (1227)
T ss_pred EEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCC
Confidence 000 0000 001478889999999999
Q ss_pred CCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEec
Q 009307 431 EGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL 506 (538)
Q Consensus 431 ~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l 506 (538)
+.. +.+||||++.++++ .++|++++++.||+|||.|...+.+. ..+.+.+.|+|++.. .+++.||.+.++|
T Consensus 1053 ~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~----~knd~lg~~~idL 1127 (1227)
T COG5038 1053 PSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG----EKNDLLGTAEIDL 1127 (1227)
T ss_pred cccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC----CCccccccccccH
Confidence 863 56999999999987 57999999999999999999999875 567899999999863 5789999999999
Q ss_pred hhhcccceeceEEEeCCCC----CcEEEEEEEEEe
Q 009307 507 SDVVSNKRINEKYHLIDSK----NGRIQIELQWRT 537 (538)
Q Consensus 507 ~~l~~~~~~~~~~~L~~~~----~G~I~l~~~w~p 537 (538)
+.+..++......+|.+.. +|.++....+++
T Consensus 1128 ~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1128 SKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred hhcCcCCccceeeeccCcceEecccEeecceecch
Confidence 9998887666666665543 577776666654
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=5.5e-19 Score=156.32 Aligned_cols=128 Identities=22% Similarity=0.326 Sum_probs=105.2
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCC-CCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (538)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.|.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999999754 48888876 69999999999999876667999999999988899
Q ss_pred cccEEEEEeCccCCCC----CCeEEEEeccccccc-CCCCCCccccEEEEEEEEEec
Q 009307 340 DKMGMNVVPLKELTPE----EPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPF 391 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~ 391 (538)
++||++.++|+++..+ .....|++|...... ++.+..+..|+|+++++|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999998753 335678887653211 012235678999999999854
No 18
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=5.8e-19 Score=154.18 Aligned_cols=111 Identities=28% Similarity=0.462 Sum_probs=95.6
Q ss_pred eeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE-ecc
Q 009307 259 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DWE 334 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~~ 334 (538)
.|.|.|+|++|+||+..+ ..|.+||||++++.+.. ..++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 56889999999996543 34679999999999999999999998 56789999999 678
Q ss_pred CCCCCcccEEEEEeCccCCCCCCeEEEEeccccccc
Q 009307 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL 370 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~ 370 (538)
..+++++||++.|+|+++..+.....|++|.+...+
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 888999999999999999877777789988665433
No 19
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=4.4e-19 Score=153.43 Aligned_cols=120 Identities=33% Similarity=0.499 Sum_probs=100.9
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC---CCEEEEEEEeccCCC-
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVG- 337 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~- 337 (538)
|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||+|.|.+.++. ...|.|+|||++..+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 89999999999999988999999999998764 48999999999999999999987543 368999999999876
Q ss_pred CCcccEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 338 KHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+|++||++.++++++. .+.....|++|.+.. ..++.+|+|++++.+.
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455567788875421 1245789999998763
No 20
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=7.3e-19 Score=150.19 Aligned_cols=119 Identities=17% Similarity=0.283 Sum_probs=100.7
Q ss_pred EEEEEEeecCCccCC-CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307 262 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (538)
Q Consensus 262 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (538)
|.|+|++|+||+..+ ..|.+||||++++++.. ..+|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997553 36899999999999999999999754 579999999999999999
Q ss_pred ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+||++.++++++..+...+.|++|.+.. ..++..|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999887788898885421 124468999998764
No 21
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=6.9e-19 Score=151.37 Aligned_cols=121 Identities=26% Similarity=0.485 Sum_probs=103.4
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..+++++
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF 78 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence 89999999999999988899999999997654 589999999999999999999987667889999999999999999
Q ss_pred cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009307 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
||++.+++.++..+.....|+.+..... .....++..|.|++.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~-~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 79 LGKVVFSIQTLQQAKQEEGWFRLLPDPR-AEEESGGNLGSLRLKV 122 (123)
T ss_pred eEEEEEEHHHcccCCCCCCEEECCCCCC-CCccccCceEEEEEEe
Confidence 9999999999987766777888764332 2233467889998876
No 22
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=6.4e-19 Score=152.82 Aligned_cols=123 Identities=29% Similarity=0.476 Sum_probs=103.2
Q ss_pred eEEEEEEEeecCCccCCC--CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307 260 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (538)
|.|+|+|++|++|+..+. .+.+||||++++++.. .+|++++++.||.|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 7899999999997654 59999999999999999999998766789999999999988
Q ss_pred CCcccEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 338 KHDKMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
++++||++.+++.++.. ......|+.|.... ...+....|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence 99999999999999873 23346777764321 11235689999999875
No 23
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=1.3e-18 Score=150.19 Aligned_cols=122 Identities=25% Similarity=0.468 Sum_probs=102.9
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|.|+|++|+||+. ..|.+||||+++++... ..++|++++++.||+|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-QKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-cEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 56899999999997432 34699999999999999999999854 36789999999999999999
Q ss_pred cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
||++.+++.++..+.....|+++..... .+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence 9999999999998877777887753211 135679999999999864
No 24
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=7.9e-19 Score=151.34 Aligned_cols=122 Identities=31% Similarity=0.497 Sum_probs=101.0
Q ss_pred eeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307 259 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (538)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ....+|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467999999999873 23469999999999999999999987 34789999999999988
Q ss_pred CCcccEEEEEeCccCCCCCCeE-EEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 338 KHDKMGMNVVPLKELTPEEPSV-KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+|++||++.+++.++....... .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 222221 13567899999999986
No 25
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=1.9e-18 Score=148.98 Aligned_cols=122 Identities=22% Similarity=0.341 Sum_probs=101.6
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (538)
...|+|+|++|+||+.. +.+||||++++++.. ..+|++. ++.||.|||+|.|.+.......+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999874 478999999997643 3578874 68999999999998765544689999999999999
Q ss_pred CcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
|++||++.++|.++..+...+.|+++.+.. ..+.+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888778898885431 123567899999999985
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=4.4e-19 Score=151.77 Aligned_cols=105 Identities=30% Similarity=0.414 Sum_probs=91.8
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEe-e--CCCCCEEEEEEEec
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV-R--DPESQAVELAVYDW 333 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~v~d~ 333 (538)
.+.|.|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997542 3357999999999999999999987 2 33467899999999
Q ss_pred cCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987766777765
No 27
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.80 E-value=6.1e-19 Score=146.93 Aligned_cols=113 Identities=22% Similarity=0.253 Sum_probs=95.7
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCCCCCCcEEEEEECC----eEEEeeeec
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKTKHVK 455 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~ 455 (538)
|+|++++.|.| ..+.|+|+|++|++|+..+.+||||++++.. .+++|++.+
T Consensus 1 ~~l~fsL~Y~~-------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 1 PKLHYSLSYDK-------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CeEEEEEEEcC-------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 57999999986 3789999999999998767799999999964 356999999
Q ss_pred CCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307 456 KNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521 (538)
Q Consensus 456 ~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 521 (538)
+|.||+|||+|.|.+..... ...|.++|||+++ ++++++||++.++++++.......+|-+|
T Consensus 56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999875432 3379999999997 78999999999999987555555677554
No 28
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=2.2e-18 Score=148.65 Aligned_cols=123 Identities=20% Similarity=0.330 Sum_probs=101.9
Q ss_pred CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (538)
|.++|+|+|++|++|+..+..|.+||||+++++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5999999999999999999988765 67899999999876
Q ss_pred CCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 338 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+|++||++.+++.++......++ ++.... ...+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~--~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTL--PLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceEE--EcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998765544444 443211 1235788999999998775
No 29
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.1e-18 Score=149.76 Aligned_cols=115 Identities=30% Similarity=0.503 Sum_probs=100.3
Q ss_pred eEEEEEEEeecCCccCCC------CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307 260 GILHVKVVKAMNLKKKDL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (538)
|+|+|+|++|+||+..+. .|.+||||++++++. .++|++++++.||+|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 689999999999998874 368999999999873 36999999999999999999999876678999999999
Q ss_pred cCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+.. +|++||++.++++++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877777888873 2367999998764
No 30
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.9e-18 Score=148.27 Aligned_cols=112 Identities=30% Similarity=0.553 Sum_probs=100.6
Q ss_pred eEEEEEEEeeecCCCC---------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307 418 GLLVVIVHEAQDVEGK---------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
|+|+|+|++|+||+.. +.+||||++++++...+|++++++.||.|||.|.|.+.+. ..+.+.++|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999753 3689999999999889999999999999999999999764 45689999999975
Q ss_pred CccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEE
Q 009307 489 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w 535 (538)
. ++++||++.++++++..++...+||+|.+..+|+|+|+++|
T Consensus 80 ----~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 ----D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred ----C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 4 78999999999999998777889999998889999999998
No 31
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=3.2e-18 Score=153.07 Aligned_cols=124 Identities=27% Similarity=0.441 Sum_probs=103.5
Q ss_pred CeeEEEEEEEeecCCccCC------------------------------CCCCCCcEEEEEEcCccCCeeeeeecCCCCC
Q 009307 258 PVGILHVKVVKAMNLKKKD------------------------------LLGASDPYVKLKITEDKLPSKKTTVKHKNLN 307 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~n 307 (538)
-.|+|.|+|++|++|+++| ..|.+||||++++++... .+|++++++.|
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~n 82 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSEN 82 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCC
Confidence 3699999999999999987 246789999999987543 58999999999
Q ss_pred CeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009307 308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (538)
Q Consensus 308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
|+|||+|.|.+... .+.|.|+|||++..+ +++||++.++++++..+...+.|+++.... .+..+..|+|+++++
T Consensus 83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~ 156 (158)
T cd04015 83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQ 156 (158)
T ss_pred CccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEE
Confidence 99999999998765 578999999999775 689999999999999888888899885421 112445789999998
Q ss_pred EE
Q 009307 388 YK 389 (538)
Q Consensus 388 ~~ 389 (538)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
No 32
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.1e-18 Score=150.11 Aligned_cols=110 Identities=30% Similarity=0.437 Sum_probs=94.3
Q ss_pred CCCCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~ 329 (538)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 344568999999999999999875 899999999996543 334699999999999999999999864 235789999
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|||++..+++++||++.++|.++...+....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877666777765
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=1.8e-18 Score=148.67 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=95.2
Q ss_pred CCCCeeEEEEEEEeecCCccCCC-CCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (538)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45578999999999999998765 4789999999997543 3457999999999999999999998642 35689999
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|||++..+++++||++.+++.++...+....|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988878888876
No 34
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.6e-18 Score=145.90 Aligned_cols=114 Identities=26% Similarity=0.436 Sum_probs=96.1
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|.|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+.......|.++|||++.. ++++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 78999999999877 78999999998643 5999999999999999999998776678999999999976 7899
Q ss_pred cEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 342 MGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 342 lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
||++.++++++.... ....|++|... .+.+.+|+|++++.|-
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence 999999999987543 23467777432 1256889999999874
No 35
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=2e-18 Score=148.69 Aligned_cols=110 Identities=31% Similarity=0.621 Sum_probs=96.6
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (538)
+....|.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4556799999999999999999889999999999965434457999999999999999999998643 25689999999
Q ss_pred ccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++.++++++||++.++++++..++....|+++
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 99999999999999999999987778888876
No 36
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=4.5e-18 Score=148.47 Aligned_cols=123 Identities=36% Similarity=0.620 Sum_probs=101.1
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (538)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997652 2245899999999999999999998654 57899999999999
Q ss_pred CCCcccEEEEEeCccCCCCCC------eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 337 GKHDKMGMNVVPLKELTPEEP------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
++|++||++.+++.++..+.. ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999886543 2356665431 11256799999999873
No 37
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.77 E-value=4.1e-18 Score=147.13 Aligned_cols=111 Identities=25% Similarity=0.375 Sum_probs=95.1
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC----CCCCeEEEEEEEcccCccC
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP----PTNDRLHVEVCSVSSRIGL 492 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~~l~v~V~d~~~~~g~ 492 (538)
++|+|++|+||+.. +.+||||++.+++.+.+|++++++.||+|||.|.|.+... .....|.++|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence 47999999999753 5789999999999999999999999999999999999762 234589999999985
Q ss_pred CCCCceeEEEEEechhhc--ccceeceEEEeCCC------CCcEEEEEEE
Q 009307 493 LHPKETLGYIDINLSDVV--SNKRINEKYHLIDS------KNGRIQIELQ 534 (538)
Q Consensus 493 ~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~------~~G~I~l~~~ 534 (538)
+++|++||++.++|+++. .+....+||+|.+. ..|+|+|++|
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 677999999999999998 45567899999753 2599999885
No 38
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=6.8e-18 Score=144.36 Aligned_cols=118 Identities=31% Similarity=0.545 Sum_probs=99.9
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (538)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 4899999999999999999998764 57899999999988899
Q ss_pred cccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
++||++.+++.++..+.. .|+.+.... ...+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~~-----~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDKK-----LRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECcccC-----CCCceeeEEEEEEEe
Confidence 999999999999986654 455553211 124579999999876
No 39
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=4.2e-18 Score=146.73 Aligned_cols=110 Identities=34% Similarity=0.516 Sum_probs=96.1
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEe
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (538)
+....+.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4456789999999999999999889999999999976554567999999999999999999998642 35689999999
Q ss_pred ccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999887777788775
No 40
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=7e-18 Score=144.02 Aligned_cols=112 Identities=27% Similarity=0.496 Sum_probs=96.9
Q ss_pred eEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|+|.+|++|+.. +.+||||++++++...+|+++. ++.||.|||.|.|.+... ..+.|.++|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence 6799999999999864 5799999999999888999875 478999999999999874 45689999999875 3
Q ss_pred CCCceeEEEEEechhhcccceeceEEEeCCCC--CcEEEEEEEE
Q 009307 494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSK--NGRIQIELQW 535 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~G~I~l~~~w 535 (538)
+ +++||++.++++++..+....+||+|...+ .|+|+|+++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 4 899999999999998876778999998653 6999999986
No 41
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=3.8e-18 Score=143.75 Aligned_cols=95 Identities=31% Similarity=0.508 Sum_probs=84.7
Q ss_pred eEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEEEEeccC
Q 009307 260 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 335 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 335 (538)
|+|+|+|++|++|+..+.. +.+||||++++.+......+|++++++.||+|||+|.|.+... ....|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999965443457999999999999999999988654 35789999999999
Q ss_pred CCCCcccEEEEEeCccCCC
Q 009307 336 VGKHDKMGMNVVPLKELTP 354 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~ 354 (538)
.++|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999984
No 42
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=5.9e-18 Score=146.10 Aligned_cols=110 Identities=26% Similarity=0.421 Sum_probs=92.2
Q ss_pred CCCCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEE-eeC--CCCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v 330 (538)
+....+.|+|+|++|+||+..+.. |.+||||++++.+......||++++++.||+|||+|.|. +.. .....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455678999999999999998876 899999999997655556799999999999999999994 432 2245799999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCC--CCeEEEEec
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l 364 (538)
||+|..++|++||++.++|+++... +....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999765 445667765
No 43
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=7.6e-18 Score=148.15 Aligned_cols=123 Identities=24% Similarity=0.377 Sum_probs=95.9
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEee---------------CCCCC
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---------------DPESQ 324 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~---------------~~~~~ 324 (538)
|.|+|++|+||+. ..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999998 45899999999997632 23468999999999999999999985 11235
Q ss_pred EEEEEEEeccCCCCCcccEEEEEeCccCCCC-CCeEEEEecccccccCC-----CCCCccccEEEEEE
Q 009307 325 AVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLND-----GQNEKSRGQLVVEF 386 (538)
Q Consensus 325 ~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 386 (538)
.|.+.|||++..++|++||++.+++.++..+ .....|++|.......+ ..+....|.|++.+
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999888999999999999999987 55677888754432221 12234556666654
No 44
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.76 E-value=1.1e-17 Score=143.75 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 449 (538)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~ 55 (125)
T cd04029 1 SGEILFSLSYDY-------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR 55 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence 499999999985 377899999999999752 5799999999952 346
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
||++++++.||.|||+|.|.+..... ...|.++|||++. ++++++||++.++|+++........||+|.
T Consensus 56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999999999999999865322 3479999999875 678999999999999998888889999984
No 45
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=1.1e-17 Score=143.18 Aligned_cols=112 Identities=29% Similarity=0.398 Sum_probs=95.2
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC--CCCCCcEEEEEECC-----eEEEe
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG--KHHTNPYARILFRG-----EERKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT 451 (538)
.|+|.+++.|. .+.|.|.|++|++|+. .+.+||||++++.. .+++|
T Consensus 1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT 53 (122)
T cd08381 1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT 53 (122)
T ss_pred CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence 38999999997 4579999999999976 35789999999963 35699
Q ss_pred eeecCCCCCcccceEEEEe-cC-CCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307 452 KHVKKNRDPRWEEEFQFML-EE-PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521 (538)
Q Consensus 452 ~v~~~t~nP~w~e~f~f~v-~~-~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 521 (538)
++++++.||+|||+|.|.+ .. ......|.++|||++. ++++++||++.++|+++..+.....||+|
T Consensus 54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999987 22 1134589999999986 57899999999999999887777899987
No 46
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=2.2e-17 Score=142.70 Aligned_cols=118 Identities=33% Similarity=0.461 Sum_probs=100.2
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (538)
.|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998765334569999999999999999999998755689999999999888999
Q ss_pred ccEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 341 KMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 341 ~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+||++.+++.++.. +.....|+++. ..|++++.+.+.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999988643 33566788762 2689999988864
No 47
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.5e-17 Score=142.37 Aligned_cols=118 Identities=26% Similarity=0.454 Sum_probs=98.7
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|.|+|++|++|+..+..|.+||||++.+++.. ..+|++++++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997644 35999999999999999999998654 5799999999999999999
Q ss_pred cEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009307 342 MGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (538)
Q Consensus 342 lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
||++.++++++... ...+.|++|... . .+....|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-~----~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-D----PDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-C----CCCccccEEEEEEE
Confidence 99999999988754 235678877431 1 23457899998864
No 48
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.75 E-value=2.3e-17 Score=140.32 Aligned_cols=112 Identities=21% Similarity=0.399 Sum_probs=99.7
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
+++|+|++|++|+.. +.+||||++++++...+|++++++.||.|||.|.|.+.+. ....|.++|||++. +++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence 478999999999864 5789999999999889999999999999999999999764 45689999999985 568
Q ss_pred CceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEEE
Q 009307 496 KETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w~ 536 (538)
+++||++.++|+++..+.....||+|.+. .|+|++.++|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999999888888899999865 79999999874
No 49
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=3.3e-17 Score=142.73 Aligned_cols=116 Identities=25% Similarity=0.524 Sum_probs=101.7
Q ss_pred CCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009307 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g 491 (538)
...|.|+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||.|.|.+.+. ..+.|.++|||++.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~--- 87 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF--- 87 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---
Confidence 4579999999999999763 5899999999999999999999999999999999999764 45689999999985
Q ss_pred CCCCCceeEEEEEechhhcc-----cceeceEEEeCCCCCcEEEEEEEE
Q 009307 492 LLHPKETLGYIDINLSDVVS-----NKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 492 ~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~G~I~l~~~w 535 (538)
++.|++||++.+++.++.. ...+.+|.++.+...|+|+|++.+
T Consensus 88 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred -CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 5678999999999999987 345667888877778999999976
No 50
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2e-17 Score=144.08 Aligned_cols=116 Identities=28% Similarity=0.482 Sum_probs=100.5
Q ss_pred eeEEEEEEEeecCCccCCCC----------CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEE
Q 009307 259 VGILHVKVVKAMNLKKKDLL----------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVEL 328 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i 328 (538)
.|.|+|+|++|++|+..+.. |.+||||++.++++.. .+|++++++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 58999999999999988752 5799999999986543 589999999999999999999963 578999
Q ss_pred EEEeccCCCCCcccEEEEEeCccCCC--CCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 329 AVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
.|||++..+++++||++.++|+++.. +.....|++|. ..|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 45677888872 4699999999874
No 51
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=5.5e-18 Score=144.61 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=92.0
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (538)
+....+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 556678999999999999998888899999999997655 2467999999999999999999998643 46899999
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCC-CeEEEE
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEE-PSVKTL 362 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~ 362 (538)
|||++..+++++||++.++|.++.... ....|+
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy 122 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWY 122 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCccccccc
Confidence 999999999999999999999996543 233444
No 52
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=2.1e-17 Score=143.29 Aligned_cols=113 Identities=26% Similarity=0.458 Sum_probs=98.5
Q ss_pred eEEEEEEEeeecCCC-----CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307 418 GLLVVIVHEAQDVEG-----KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (538)
Q Consensus 418 g~L~v~v~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
|.|+|+|++|++|+. .+.+||||++.+++...+|++++++.||.|||.|.|.+.+. ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence 689999999999975 35789999999999899999999999999999999999873 45689999999885
Q ss_pred CCCCceeEEEEEechhhcc---cceeceEEEeCCC-------CCcEEEEEEEE
Q 009307 493 LHPKETLGYIDINLSDVVS---NKRINEKYHLIDS-------KNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~-------~~G~I~l~~~w 535 (538)
++.+++||++.+++.++.. .....+||+|.+. .+|+|+|++.|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5678999999999999983 3446799999865 37999999998
No 53
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=4.5e-17 Score=140.35 Aligned_cols=115 Identities=22% Similarity=0.369 Sum_probs=98.2
Q ss_pred ceEEEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
...|+|+|++|+||+.++.+||||++.+++.. .+|++ +++.||.|||.|.|.+... ....+.|.|+|++. +++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence 34699999999999988889999999998755 58887 4689999999999987543 33579999999875 578
Q ss_pred CceeEEEEEechhhcccceeceEEEeCCC------CCcEEEEEEEEEe
Q 009307 496 KETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRT 537 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l~~~w~p 537 (538)
+++||.+.++|+++..+...+.||+|... ..|+|+|+++|++
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999999888778899999753 2499999999986
No 54
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=2.5e-17 Score=143.94 Aligned_cols=116 Identities=26% Similarity=0.370 Sum_probs=97.9
Q ss_pred CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----
Q 009307 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG----- 446 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~----- 446 (538)
....|+|.+++.|. .|.|.|+|++|+||... +.+||||++++..
T Consensus 14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~ 66 (146)
T cd04028 14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI 66 (146)
T ss_pred CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence 45789999999983 46899999999999752 4689999999953
Q ss_pred eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE-cccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307 447 EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS-VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 524 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d-~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 524 (538)
.++||++++++.||+|||+|.|.+. . ....|.++||+ .+. ++++++||.+.++|+++..+.....||+|...
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2569999999999999999999998 2 55689999995 443 56789999999999998666677899999864
No 55
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.75 E-value=3.6e-17 Score=140.16 Aligned_cols=112 Identities=23% Similarity=0.414 Sum_probs=99.0
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+.. +.+||||++.+++ ...+|++++++.||.|||.|.|.+.+. .+.+.++|||++. +++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~~ 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GLT 75 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CCC
Confidence 78999999999763 5799999999987 467999999999999999999998763 4689999999986 568
Q ss_pred CceeEEEEEechhhcccceeceEEEeCCCC----CcEEEEEEEEEe
Q 009307 496 KETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRT 537 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~----~G~I~l~~~w~p 537 (538)
+++||++.++++++..+.....|++|.+.+ .|+|++.+.+.|
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 999999999999999888888999998654 599999999987
No 56
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=8.7e-18 Score=140.24 Aligned_cols=94 Identities=20% Similarity=0.344 Sum_probs=82.1
Q ss_pred eEEEEEEEeecCCccCCCC----CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307 260 GILHVKVVKAMNLKKKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (538)
|+|.|+|++|++|+..+.. +.+||||++++++.. .||++++++.||+|||+|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999997543 58999999999999999999987543 458999999999
Q ss_pred CCCCCcccEEEEEeCccCCCCC
Q 009307 335 QVGKHDKMGMNVVPLKELTPEE 356 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998664
No 57
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.75 E-value=9.3e-18 Score=144.51 Aligned_cols=110 Identities=25% Similarity=0.376 Sum_probs=91.6
Q ss_pred CCCCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (538)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 445678999999999999998865 899999999997654 3356999999999999999999998643 25799999
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCC---CeEEEEec
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEE---PSVKTLDL 364 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~l 364 (538)
|||++.++++++||++.|+|+++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999996543 33345543
No 58
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2.6e-17 Score=140.44 Aligned_cols=111 Identities=23% Similarity=0.419 Sum_probs=92.7
Q ss_pred EEEEEEEeeec---CCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc--
Q 009307 419 LLVVIVHEAQD---VEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI-- 490 (538)
Q Consensus 419 ~L~v~v~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~-- 490 (538)
.|+|+|++|++ |+. .+.+||||++.++++..+|++++++.||+|||+|.|.+.+. ...|.++|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48899999999 654 36899999999999999999999999999999999999764 358999999987510
Q ss_pred cCCCCCceeEEEEEechhhcccceeceEEEeCCC------CCcEEEE
Q 009307 491 GLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQI 531 (538)
Q Consensus 491 g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l 531 (538)
+-+++|++||++.++|+++..+....+||+|.+. +.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0013799999999999999988888999999843 3577764
No 59
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=4e-17 Score=142.60 Aligned_cols=120 Identities=25% Similarity=0.450 Sum_probs=98.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC---------CCCEEEEEEE
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELAVY 331 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~v~ 331 (538)
.|+|+|++|++|+.+|..|.+||||++++++.. .+|++++++.||.|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 5899999999999999999975432 1357999999
Q ss_pred eccCCCCCcccEEEEE-eCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307 332 DWEQVGKHDKMGMNVV-PLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++.+.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999986 4444442 345667888743 24579999999999874
No 60
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2.3e-17 Score=140.95 Aligned_cols=111 Identities=22% Similarity=0.382 Sum_probs=96.3
Q ss_pred EEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCce
Q 009307 419 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKET 498 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~ 498 (538)
.|.|+|++|+||+.. .+||||++++++...+|++++++.||+|||.|+|.+... ....|.++|||++. + ++++
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF 73 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence 378999999999887 899999999999888999999999999999999998764 45689999999974 3 6899
Q ss_pred eEEEEEechhhcccc-----eeceEEEeCCCC----CcEEEEEEEEE
Q 009307 499 LGYIDINLSDVVSNK-----RINEKYHLIDSK----NGRIQIELQWR 536 (538)
Q Consensus 499 lG~~~i~l~~l~~~~-----~~~~~~~L~~~~----~G~I~l~~~w~ 536 (538)
||++.++|+++..+. ...+||+|.+.+ +|+|+++++|-
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999999987632 256899998754 59999999873
No 61
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=1.7e-17 Score=142.84 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=97.2
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 449 (538)
+|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~ 55 (125)
T cd08393 1 QGSVQFALDYDP-------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR 55 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence 599999999985 367899999999999763 4789999999952 346
Q ss_pred EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
+|++++++.||+|||.|.|.+.... ....|.++|||++. ++++++||++.++|.++..+.....||+|.
T Consensus 56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999986432 23489999999985 678999999999999997776778999984
No 62
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=3.6e-17 Score=144.69 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=96.7
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
.|.|+|++|++|+.. +.+||||++.++++..+|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence 378999999999653 58999999999998889999876 69999999999999764 45689999999875 56
Q ss_pred CCceeEEEEEechhhccc----ceeceEEEeCCCC-----------CcEEEEEEEEEe
Q 009307 495 PKETLGYIDINLSDVVSN----KRINEKYHLIDSK-----------NGRIQIELQWRT 537 (538)
Q Consensus 495 ~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~-----------~G~I~l~~~w~p 537 (538)
++++||++.++|+++..+ ....+||+|.+.+ +|+|+|++.+-+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 789999999999998753 3468999998653 399999998864
No 63
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=4.3e-17 Score=140.97 Aligned_cols=117 Identities=31% Similarity=0.488 Sum_probs=99.9
Q ss_pred EEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCCCCCcccE
Q 009307 266 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKHDKMG 343 (538)
Q Consensus 266 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~lG 343 (538)
|++|++|+. ..|.+||||++++++.. ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998754 5899999999999999999999754 4689999999999999999999
Q ss_pred EEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccC
Q 009307 344 MNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 393 (538)
Q Consensus 344 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
++.++++++..+.....|++|... .+....|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988777888887431 12335799999999998643
No 64
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=2.2e-17 Score=142.48 Aligned_cols=110 Identities=35% Similarity=0.547 Sum_probs=95.0
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 331 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 331 (538)
+....+.|.|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 445678999999999999999988999999999996544445799999999999999999997532 23568999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++..+++++||++.++++++..+.....|++|
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 999999999999999999999988778888876
No 65
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=3.6e-17 Score=140.46 Aligned_cols=118 Identities=28% Similarity=0.504 Sum_probs=95.7
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC--C
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK--H 339 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~--d 339 (538)
|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999997532 3699999999999999999999965 6899999999998775 5
Q ss_pred cccEEEEEeCccCCCCCC-eEEEEecccccccCCCCCCccccEEEEEE
Q 009307 340 DKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
++||++.+++.++..... ...|+++... .+ ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence 799999999999876543 3556666322 11 12356789988875
No 66
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=2.5e-17 Score=140.80 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=90.1
Q ss_pred cccccCCCc-cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC-CC
Q 009307 245 EVPILDPSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PE 322 (538)
Q Consensus 245 ~~pi~~~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~-~~ 322 (538)
.-|++++.. ..+...|.|+|+|++|++|+. +..+.+||||++++++. .++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 456666655 346788999999999999984 66788999999999876 3599999999999999999997533 34
Q ss_pred CCEEEEEEEeccCCCCCcccEEEEEeCccCCC
Q 009307 323 SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 354 (538)
Q Consensus 323 ~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 354 (538)
.+.|+|+|||++..++|++||++.+++.....
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 78999999999999999999999999997663
No 67
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=3.1e-17 Score=139.54 Aligned_cols=102 Identities=26% Similarity=0.373 Sum_probs=85.7
Q ss_pred ceEEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccC
Q 009307 417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR 489 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~ 489 (538)
.+.|.|+|++|+||+.. +.+||||++++.. .+++|++++++.||+|||+|.|.+........+.++||+++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999764 5789999999964 3559999999999999999999987543445799999998752
Q ss_pred ccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307 490 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 521 (538)
..++++||.+.++|.++..+....+||.|
T Consensus 91 ---~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 ---SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ---cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 23578999999999999877778899986
No 68
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=2.3e-17 Score=141.66 Aligned_cols=109 Identities=32% Similarity=0.434 Sum_probs=95.4
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEE-eeC--CCCCEEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAVY 331 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v~ 331 (538)
+....+.|.|+|++|+||+..+..|.+||||++.+.+....+++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 55667899999999999999998889999999998766556679999888 999999999998 542 23678999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++..+++++||++.++|+++..+.....|++|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999999999999999999888888888876
No 69
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.73 E-value=4.5e-17 Score=140.22 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=96.0
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 449 (538)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~Y~~-------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~ 55 (128)
T cd08392 1 TGEIEFALHYNF-------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR 55 (128)
T ss_pred CcEEEEEEEEeC-------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence 499999999985 367999999999999753 5789999999953 356
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc---ceeceEEEeC
Q 009307 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN---KRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~ 522 (538)
||++++++.||+|||+|.|.+..... ...|.+.||+.+. ++++++||++.|+|+++.-. ....+||+|.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999865322 3489999999875 57889999999999998543 3677999984
No 70
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=7.4e-17 Score=137.81 Aligned_cols=110 Identities=19% Similarity=0.401 Sum_probs=96.3
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|+|+|++|++|+.. +.+||||++++++ ...+|++++++.||+|||.|.|.+... ....|.|+|||++. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~----~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY----V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----C
Confidence 78999999999764 5789999999963 456999999999999999999999764 44579999999875 5
Q ss_pred CCCceeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEE
Q 009307 494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w 535 (538)
++++||++.++++++..+.....||+|.+.+.|++++++.+
T Consensus 77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred -CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 78999999999999988888899999998888999988865
No 71
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=1.8e-17 Score=140.95 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=87.8
Q ss_pred CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (538)
..+.|.|+|++|+||+.++ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4588999999999999988 7899999999998643 23568999999999999999999986432 357899999998
Q ss_pred CCC-CCcccEEEEEeCccCCCCCCeEEEEe
Q 009307 335 QVG-KHDKMGMNVVPLKELTPEEPSVKTLD 363 (538)
Q Consensus 335 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~ 363 (538)
... ++++||++.+++.++..++....|+.
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 775 47899999999999986665556654
No 72
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=3.4e-17 Score=136.52 Aligned_cols=98 Identities=33% Similarity=0.526 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (538)
.|.|+|++|++|+..+..+.+||||+++++++ .++|++++++.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 38899999999999888899999999999974 3589999999999999999999998777899999999985 88
Q ss_pred ccEEEEEeCccCCCCC--CeEEEEec
Q 009307 341 KMGMNVVPLKELTPEE--PSVKTLDL 364 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~--~~~~~~~l 364 (538)
+||++.++|.++.... ....|++|
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L 100 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPL 100 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEec
Confidence 9999999999988654 34677776
No 73
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.72 E-value=6.7e-17 Score=139.73 Aligned_cols=114 Identities=25% Similarity=0.423 Sum_probs=96.5
Q ss_pred EEEEEEEeeecCCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC--CCeEEEEEEEcccCccCC
Q 009307 419 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT--NDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~--~~~l~v~V~d~~~~~g~~ 493 (538)
.|+|+|++|++|+. .+.+||||+++++++.++|++++++.||.|||.|.|.+.++.. ...|.++|||++. +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence 37899999999975 3579999999999999999999999999999999999976422 3479999999875 4
Q ss_pred C-CCceeEEEEEechhhc-ccceeceEEEeCCC-----CCcEEEEEEEEE
Q 009307 494 H-PKETLGYIDINLSDVV-SNKRINEKYHLIDS-----KNGRIQIELQWR 536 (538)
Q Consensus 494 ~-~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~-----~~G~I~l~~~w~ 536 (538)
+ .+++||++.++++++. .+....+||+|... .+|+|+|++.+.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 4 7899999999999998 44566899999754 379999999764
No 74
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.72 E-value=5e-17 Score=140.65 Aligned_cols=110 Identities=30% Similarity=0.428 Sum_probs=94.0
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (538)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 445678999999999999999988999999999997533 3457999999999999999999998543 357899999
Q ss_pred EeccCC--CCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 331 YDWEQV--GKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 331 ~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++.. +++++||++.+++.++..++....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777777765
No 75
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=3.6e-17 Score=140.76 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=92.9
Q ss_pred CCCCeeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (538)
+....+.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4456789999999999999988 67899999999986432 2357899999999999999999998643 25689999
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|||++..+++++||++.++++++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999766666667653
No 76
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=8.4e-17 Score=138.57 Aligned_cols=115 Identities=20% Similarity=0.416 Sum_probs=98.6
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~ 452 (538)
+|+|++++.|.| ..|.|.|+|++|++|+.. +.+||||++++. ....+|+
T Consensus 2 ~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08387 2 RGELHFSLEYDK-------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSK 56 (124)
T ss_pred CCEEEEEEEECC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCc
Confidence 699999999985 367999999999999763 579999999994 2357999
Q ss_pred eecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 453 HVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
+++++.||.|||.|.|.+.... ....|.++|||++. ++++++||++.++|+++..+...+.||+|+
T Consensus 57 v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 57 IHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999986532 13479999999975 678999999999999998777889999985
No 77
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=6.8e-17 Score=139.01 Aligned_cols=111 Identities=31% Similarity=0.462 Sum_probs=96.0
Q ss_pred cCCCCeeEEEEEEEeecCCccCC-CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307 254 AYRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (538)
Q Consensus 254 ~~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (538)
.++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 34567789999999999999988 678999999999865433456899999999999999999998643 246899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.++|+++........|++|
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 9999988999999999999999988888888876
No 78
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=2.5e-16 Score=137.17 Aligned_cols=113 Identities=20% Similarity=0.392 Sum_probs=98.0
Q ss_pred ceEEEEEEEeeecCCCC-------------CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307 417 GGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 482 (538)
.|.|+|+|++|++|... +.+||||++.++++. .+|++++++.||.|||.|+|.+.+ ...+.+.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 68999999999999653 258999999999866 599999999999999999999964 3689999
Q ss_pred EEEcccCccCCCCCceeEEEEEechhhcc--cceeceEEEeCCCCCcEEEEEEEEEeC
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKYHLIDSKNGRIQIELQWRTA 538 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~G~I~l~~~w~p~ 538 (538)
|+|++. ++.+++||++.++|+++.. +.....||+|. ++|+|+|+++|+.+
T Consensus 80 v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~ 131 (132)
T cd04014 80 VFHDAA----IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS 131 (132)
T ss_pred EEeCCC----CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence 998874 5678999999999999987 45678999997 58999999999863
No 79
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=2.1e-16 Score=136.33 Aligned_cols=112 Identities=21% Similarity=0.348 Sum_probs=96.9
Q ss_pred EEEEEEeeecCCCC-CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCC
Q 009307 420 LVVIVHEAQDVEGK-HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 496 (538)
Q Consensus 420 L~v~v~~a~~L~~~-~~~dpyv~v~~~~--~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d 496 (538)
|.|+|++|++|+.. +.+||||++++++ +..+|++++++.||.|||.|.|.+.. ....+.++|||++. ++++
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence 57899999999753 5799999999974 56799999999999999999999864 34689999999986 5679
Q ss_pred ceeEEEEEechhhcccceeceEEEeCCC------CCcEEEEEEEEEe
Q 009307 497 ETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRT 537 (538)
Q Consensus 497 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l~~~w~p 537 (538)
++||++.++++++.......+||+|... ..|+|+++++|.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 75 KFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred ceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 9999999999999987777899999754 3799999999976
No 80
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.9e-17 Score=139.39 Aligned_cols=109 Identities=27% Similarity=0.497 Sum_probs=89.4
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~ 329 (538)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 344568999999999999999888999999999997532 2356899999999999999999986442 35789999
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|||++..+++++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999999999999999999998332 233456654
No 81
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=4.1e-17 Score=143.87 Aligned_cols=106 Identities=35% Similarity=0.537 Sum_probs=90.2
Q ss_pred cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC--------------------------CeeeeeecCCCCC
Q 009307 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--------------------------PSKKTTVKHKNLN 307 (538)
Q Consensus 254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~~T~v~~~t~n 307 (538)
....+.+.|.|+|++|+||...|..|.+||||++.+.+... ..++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 45678999999999999999999999999999999964321 2368999999999
Q ss_pred CeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|.|||+|.|.+.....+.|.|+|||++ +++||++.++++++.. .....|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 8899999999999983 334566553
No 82
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.4e-16 Score=137.59 Aligned_cols=115 Identities=29% Similarity=0.503 Sum_probs=94.4
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCC----
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV---- 336 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---- 336 (538)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 5899999999999999999998654 57899999999852
Q ss_pred -------CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009307 337 -------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (538)
Q Consensus 337 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4789999999999988644 34677764321 2356799998864
No 83
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.7e-16 Score=134.86 Aligned_cols=113 Identities=37% Similarity=0.589 Sum_probs=97.0
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|+|+|++|++|+..+..+.+||||++++.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997643 3699999999999999999999977657899999999999889999
Q ss_pred cEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEE
Q 009307 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLV 383 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~ 383 (538)
||++.+++.++..+.....|+++.. .++...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence 9999999999998888888888743 1344566654
No 84
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.71 E-value=2.3e-16 Score=134.76 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=94.6
Q ss_pred EEEEEEeeecCCCC----CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307 420 LVVIVHEAQDVEGK----HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (538)
Q Consensus 420 L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|.|.+|+||+.. +.+||||++.++++ ..+|++++++.||.|||.|.|.+.+. ...+.+.|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence 67899999999763 46899999999775 46999999999999999999999753 3589999999985 67
Q ss_pred CCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEE
Q 009307 495 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w 535 (538)
++++||.+.++++++..+...+.||+|... .+|+|+|++.+
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 899999999999999887777899999753 27999999864
No 85
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=4.3e-16 Score=137.13 Aligned_cols=121 Identities=20% Similarity=0.347 Sum_probs=96.3
Q ss_pred EEEEEeecC--CccCCCCCCCCcEEEEEE--cCccCCeeeeeecCCCCCCeEecEEEEEeeCCC--------CCEEEEEE
Q 009307 263 HVKVVKAMN--LKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--------SQAVELAV 330 (538)
Q Consensus 263 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--------~~~L~i~v 330 (538)
.++|..|++ |+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 445555555 777777789999999997 333445679999999999999999999996442 45799999
Q ss_pred EeccCC-CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 331 YDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 331 ~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
||++.+ ++|++||++.++|+.+........++++... .....|+|++++....
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 999976 5799999999999999887666678887532 2457789999998874
No 86
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=2.2e-16 Score=141.75 Aligned_cols=128 Identities=23% Similarity=0.330 Sum_probs=101.0
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~k 450 (538)
+|+|.+++.|.|...+.. +.......|.|.|+|++|+||+.. +.+||||++++. ...++
T Consensus 1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k 67 (162)
T cd04020 1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67 (162)
T ss_pred CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence 599999999998754321 122334689999999999999864 578999999983 24579
Q ss_pred eeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 523 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 523 (538)
|++++++.||.|||.|.|.+.... .+..|.|+|||++. ++++++||++.++++++...+...+||.+.+
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999999999999999999864221 23479999999986 5779999999999999876655677777753
No 87
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=2.1e-16 Score=132.94 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=85.7
Q ss_pred eEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCc
Q 009307 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKE 497 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~ 497 (538)
+.|.|+|++|++|+..+..||||++.+++.+.+|++.++ .||.|||.|.|.+.+. +..|.|+|||++. ..|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCCC
Confidence 579999999999988878899999999998889999988 5999999999999763 3459999999873 4799
Q ss_pred eeEEEEEechhhcccce--eceEEEeCC
Q 009307 498 TLGYIDINLSDVVSNKR--INEKYHLID 523 (538)
Q Consensus 498 ~lG~~~i~l~~l~~~~~--~~~~~~L~~ 523 (538)
+||++.++|+++..+.. ..+||+|..
T Consensus 74 ~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 74 LVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred ceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999999987644 379999973
No 88
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=6.9e-17 Score=135.83 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=86.4
Q ss_pred EEEEEEeecCCccCCC-CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeE-ecEEEEEeeCC--CCCEEEEEEEeccCCC
Q 009307 262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRDP--ESQAVELAVYDWEQVG 337 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~v~d~~~~~ 337 (538)
|.|+|++|++|+.++. .|.+||||++++++. ..+|++++++.||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998884 688999999999873 469999999999999 99999998754 2478999999999999
Q ss_pred CCcccEEEEEeCccCCCC---CCeEEEEecc
Q 009307 338 KHDKMGMNVVPLKELTPE---EPSVKTLDLL 365 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~---~~~~~~~~l~ 365 (538)
+|++||++.+++.++... .....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3345666653
No 89
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=8.5e-17 Score=138.55 Aligned_cols=103 Identities=33% Similarity=0.564 Sum_probs=90.2
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCC---CCCEEEEEEEeccC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 335 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 335 (538)
|.|.|+|++|++|+..+..+.+||||++++++.. .+|++.. ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999998888999999999997654 4788877 489999999999999876 35789999999999
Q ss_pred CCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
.++|++||++.+++.++..++....|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999998877777777763
No 90
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.70 E-value=2.2e-16 Score=136.04 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 452 (538)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ +..+|+
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08385 2 LGKLQFSLDYDF-------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK 56 (124)
T ss_pred ccEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence 699999999985 367899999999999763 5789999999853 356999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+..... ...|.++|||++. ++++++||++.++|+++..+....+|++|.
T Consensus 57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999999999999865322 3589999999875 578899999999999998777788999985
No 91
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.70 E-value=2.2e-16 Score=136.64 Aligned_cols=117 Identities=28% Similarity=0.425 Sum_probs=98.2
Q ss_pred cccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEE
Q 009307 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEER 449 (538)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~ 449 (538)
+.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++. ...+
T Consensus 1 ~~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~ 55 (127)
T cd04030 1 PLGRIQLTIRYSS-------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55 (127)
T ss_pred CCeEEEEEEEEeC-------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence 3699999999985 367899999999999764 579999999995 3467
Q ss_pred EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCC-CCCceeEEEEEechhhcccceeceEEEeC
Q 009307 450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLL-HPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
+|++++++.||+|||.|.|.+.... ....|.+.|||++.. + +.+++||++.++|+++..+....+||+|.
T Consensus 56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~---~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF---LSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc---cCCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999999999999999986432 235899999998751 1 57899999999999998777788999984
No 92
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.5e-16 Score=133.82 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=83.0
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (538)
++.|.|+|++|++|+..+ ..||||++.+++++ .+|++.++ .||+|||+|.|.+.+. ...|.|+|||++.. .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-C
Confidence 368999999999997654 46999999998765 48888877 5999999999999775 45599999999854 9
Q ss_pred CcccEEEEEeCccCCCCCCe--EEEEecccc
Q 009307 339 HDKMGMNVVPLKELTPEEPS--VKTLDLLKN 367 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~ 367 (538)
||+||++.++|+++..+... ..|++|...
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 99999999999999866544 577777543
No 93
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=1.1e-16 Score=137.99 Aligned_cols=115 Identities=25% Similarity=0.387 Sum_probs=95.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeCCC----CCEEEEEEEeccC
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 335 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 335 (538)
.|+|+|++|++|+..+..+.+||||++++++.. ..+|++.. ++.||.|||+|.|.+.... ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999998888999999999998722 25888875 6899999999999997763 6889999999998
Q ss_pred CCCCcccEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEE
Q 009307 336 VGKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVV 384 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (538)
.++|++||++.+++.++..+.. ...|+.+.+. +++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999987654 3567766431 3677888874
No 94
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=1.2e-16 Score=136.24 Aligned_cols=103 Identities=28% Similarity=0.478 Sum_probs=90.3
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (538)
|.|+|+|++|++|+..+..+.+||||++++++.. ..+|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999997643 36899999999999999999998765 57999999999999999
Q ss_pred cccEEEEEeCccCCCCCCeEEEEeccc
Q 009307 340 DKMGMNVVPLKELTPEEPSVKTLDLLK 366 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++||++.+++.++..+ ....|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999877 4566666644
No 95
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=2.7e-16 Score=131.11 Aligned_cols=98 Identities=26% Similarity=0.537 Sum_probs=86.5
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
.|.|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+.++ ..+.+.++|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence 378999999999863 5899999999999999999999999999999999999874 45689999999862
Q ss_pred CceeEEEEEechhhcccc--eeceEEEeCCC
Q 009307 496 KETLGYIDINLSDVVSNK--RINEKYHLIDS 524 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~ 524 (538)
+++||++.++|.++.... ..++||+|.++
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 689999999999998754 67899999864
No 96
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.2e-16 Score=143.32 Aligned_cols=108 Identities=30% Similarity=0.388 Sum_probs=92.1
Q ss_pred CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEE
Q 009307 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 331 (538)
Q Consensus 257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 331 (538)
...|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 468999999999999999998899999999998542 2345799999999999999999998532 23468999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.+++|++||++.+++.++........|+++
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 999999999999999999999876666677665
No 97
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.5e-16 Score=132.59 Aligned_cols=99 Identities=24% Similarity=0.475 Sum_probs=87.2
Q ss_pred CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc
Q 009307 434 HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN 512 (538)
Q Consensus 434 ~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~ 512 (538)
|.+||||+++++++ ..+|++++++.||.|||.|.|.+.+. ..+.|.|+|+|++. + ++++||++.++|+++...
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLIDA 84 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHhh
Confidence 57899999999885 46999999999999999999999874 45689999999885 5 789999999999999764
Q ss_pred -ceeceEEEeCCCCCcEEEEEEEEEeC
Q 009307 513 -KRINEKYHLIDSKNGRIQIELQWRTA 538 (538)
Q Consensus 513 -~~~~~~~~L~~~~~G~I~l~~~w~p~ 538 (538)
....+||+|.+.++|+|+++++|+|+
T Consensus 85 ~~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TSVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hhccceeEECCCCCCCEEEEEEEEecC
Confidence 44679999998889999999999996
No 98
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=3.6e-16 Score=134.66 Aligned_cols=114 Identities=20% Similarity=0.426 Sum_probs=96.3
Q ss_pred eEEEEEEEeeecCCCC----CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009307 418 GLLVVIVHEAQDVEGK----HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g 491 (538)
|.|+|+|++|++|+.. +.+||||++.+++ ...+|++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 3589999999988 67899999999999999999999873 45789999999985
Q ss_pred CCCCCceeEEEEEechhhcccceece-EEEeC--CCCCcEEEEEEEEEe
Q 009307 492 LLHPKETLGYIDINLSDVVSNKRINE-KYHLI--DSKNGRIQIELQWRT 537 (538)
Q Consensus 492 ~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~--~~~~G~I~l~~~w~p 537 (538)
++++++||++.++|.++........ ++.+. ++..|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 4678999999999999998765543 34443 234799999999987
No 99
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=5.4e-16 Score=134.07 Aligned_cols=111 Identities=24% Similarity=0.494 Sum_probs=97.2
Q ss_pred EEeeecCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEE
Q 009307 424 VHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGY 501 (538)
Q Consensus 424 v~~a~~L~~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~ 501 (538)
|.+|++|+. .+.+||||++++++..++|++++++.||+|||.|.|.+.... ....+.++|||++. ++++++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence 678999987 467999999999998899999999999999999999997642 34689999999975 567899999
Q ss_pred EEEechhhcccceeceEEEeCCCC----CcEEEEEEEEEeC
Q 009307 502 IDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRTA 538 (538)
Q Consensus 502 ~~i~l~~l~~~~~~~~~~~L~~~~----~G~I~l~~~w~p~ 538 (538)
+.++++++..+.....|++|.+.+ +|+|+++++|.|+
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 999999999888888999997542 6999999999985
No 100
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=3.2e-16 Score=135.25 Aligned_cols=114 Identities=25% Similarity=0.437 Sum_probs=93.8
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|.+++.|.+ ..+.|.|+|++|++|+.. +.+||||++++.+ ..++
T Consensus 2 ~G~l~~~l~~~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k 56 (125)
T cd04031 2 TGRIQIQLWYDK-------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR 56 (125)
T ss_pred cEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence 599999999985 367899999999999763 5789999999964 4569
Q ss_pred eeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
|++++++.||+|||.|.|.+.... ....|.++|||++. ++.+++||++.++|++... ....+||+|+
T Consensus 57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 999999999999999999864421 23589999999985 5678999999999998433 3346899984
No 101
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.69 E-value=6.4e-17 Score=140.53 Aligned_cols=109 Identities=28% Similarity=0.335 Sum_probs=89.0
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (538)
+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 445568899999999999999888999999999996532 335689999999999999999999864 3467899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||+|..+++++||++.++.... ++..+.|.++.
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml 122 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQML 122 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHH
Confidence 9999999999999999977643 33444555543
No 102
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.69 E-value=2.2e-16 Score=134.79 Aligned_cols=112 Identities=25% Similarity=0.420 Sum_probs=93.0
Q ss_pred EEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC---CCCCCcEEEEEECC------eEEEe
Q 009307 381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG------EERKT 451 (538)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~kT 451 (538)
+|.+++.|.| ..+.|.|+|++|+||+. .+.+||||++++.. ..++|
T Consensus 2 ~i~~sL~Y~~-------------------------~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT 56 (124)
T cd08680 2 QVQIGLRYDS-------------------------GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT 56 (124)
T ss_pred eEEEEEEECC-------------------------CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence 5888999985 37789999999999976 35789999999842 35699
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc-ceeceEEEe
Q 009307 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHL 521 (538)
Q Consensus 452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 521 (538)
++++++.||+|||+|+|.+..... +..|.++||+.+. ++++++||.+.++|+++... ....+||+|
T Consensus 57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999999999865322 3489999999875 57899999999999999544 457789976
No 103
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.69 E-value=6.4e-16 Score=138.22 Aligned_cols=113 Identities=21% Similarity=0.421 Sum_probs=95.6
Q ss_pred ceEEEEEEEeeecCCCC---------------------------------CCCCcEEEEEECCeE-EEeeeecCCCCCcc
Q 009307 417 GGLLVVIVHEAQDVEGK---------------------------------HHTNPYARILFRGEE-RKTKHVKKNRDPRW 462 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---------------------------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w 462 (538)
-|.|.|+|++|++|+.+ +.+||||++.+++.+ .+|++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 57888999999988652 247999999999865 49999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC------CCcEEEEEEEEE
Q 009307 463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWR 536 (538)
Q Consensus 463 ~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~I~l~~~w~ 536 (538)
||.|.|.+... .+.|.++|+|++. + ++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998753 3589999999874 3 468999999999999988888999999753 258999999984
No 104
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=1.9e-16 Score=138.97 Aligned_cols=93 Identities=41% Similarity=0.693 Sum_probs=85.2
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (538)
.|.|+|+|++|+||+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999998887 899999999998754 5999999999999999999999877 7899999999999999
Q ss_pred CcccEEEEEeCccCCCCC
Q 009307 339 HDKMGMNVVPLKELTPEE 356 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~ 356 (538)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999988653
No 105
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=1.4e-16 Score=136.88 Aligned_cols=120 Identities=27% Similarity=0.432 Sum_probs=94.7
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCc
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (538)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4789999999999999889999999999987653 347888889999999999999987766789999999999999999
Q ss_pred ccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+||++.+++.+.... .++.+..+ . ......|.++..-.+.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~----~----~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGL----P----PTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccC----C----CcccccCceecCcccCc
Confidence 999999999987642 22222211 1 11235677776665554
No 106
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.68 E-value=7.8e-16 Score=132.34 Aligned_cols=110 Identities=27% Similarity=0.480 Sum_probs=94.8
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
+|+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||.|.|.+... ....|.|+|||++. ++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence 488999999999764 4689999999999889999999999999999999999874 35689999999875 567
Q ss_pred CceeEEEEEechhhcccceeceEEEeCCC---------CCcEEEEEE
Q 009307 496 KETLGYIDINLSDVVSNKRINEKYHLIDS---------KNGRIQIEL 533 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~---------~~G~I~l~~ 533 (538)
+++||++.++|+++........||.|... ..|.|++.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 89999999999999876667899999752 258888876
No 107
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=8.9e-17 Score=139.48 Aligned_cols=109 Identities=28% Similarity=0.384 Sum_probs=89.2
Q ss_pred CCCCeeEEEEEEEeecCCccCCC--CCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL 328 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i 328 (538)
+....+.|.|+|++|+||+..|. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 44567889999999999999883 355899999999764 34467999999999999999999998643 3678999
Q ss_pred EEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+|||+|.++++++||++.+++.. .++..+.|.++.
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 99999999999999999999975 344445555553
No 108
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.68 E-value=1.3e-15 Score=130.19 Aligned_cols=110 Identities=25% Similarity=0.423 Sum_probs=95.2
Q ss_pred eEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|.|+|++|++|+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+ ..+.+.++|||++. ++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~----~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK----DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCC----CC
Confidence 6799999999999863 578999999999888899999999999999999999865 24689999999875 46
Q ss_pred CCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEE
Q 009307 495 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w 535 (538)
++++||++.+++.++..+. .+||+|.+. ..|+|.+++++
T Consensus 75 ~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 7899999999999987544 689999754 37999999886
No 109
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=1.1e-16 Score=138.79 Aligned_cols=115 Identities=20% Similarity=0.353 Sum_probs=92.8
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC-----CCCCcEEEEEECCe-----E
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRGE-----E 448 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~-----~~~dpyv~v~~~~~-----~ 448 (538)
.|+|.++++|.|. .+.|.|.|++|+||... +.+||||++++... +
T Consensus 1 ~Gel~~sL~Y~~~-------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k 55 (138)
T cd08407 1 TGEVLLSISYLPA-------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK 55 (138)
T ss_pred CCEEEEEEEEeCC-------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence 4999999999974 67899999999999764 34899999999642 4
Q ss_pred EEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC
Q 009307 449 RKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 524 (538)
Q Consensus 449 ~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 524 (538)
+||++++++.||+|||.|.|.+..... +..|.++|+|++. ++++++||++.+++.. .+....+|..+..+
T Consensus 56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 589999999999999999999976432 3479999999986 6789999999999975 23344566665544
No 110
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.68 E-value=2.8e-16 Score=137.15 Aligned_cols=108 Identities=24% Similarity=0.366 Sum_probs=92.2
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCc-cCCeeeeeecCCCCCCeEecEEEEEeeCC---------------CCCE
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQA 325 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---------------~~~~ 325 (538)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 6789999999999842 12346999999999999999999998765 4678
Q ss_pred EEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccccccc
Q 009307 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL 370 (538)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~ 370 (538)
|.|+|||++..+++++||++.+++.++........|++|.+...+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 999999999888999999999999999877777888888665443
No 111
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.68 E-value=3.2e-16 Score=136.47 Aligned_cols=100 Identities=32% Similarity=0.529 Sum_probs=86.9
Q ss_pred CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCC----CCCEEE
Q 009307 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAVE 327 (538)
Q Consensus 256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~----~~~~L~ 327 (538)
....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.
T Consensus 12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 34568899999999999999888999999999997532 2357999999999999999999998652 256899
Q ss_pred EEEEeccCCCCCcccEEEEEeCccCCCC
Q 009307 328 LAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (538)
Q Consensus 328 i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
++|||++..++|++||++.++|+++..-
T Consensus 92 ~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 92 FTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 9999999999999999999999999854
No 112
>PLN03008 Phospholipase D delta
Probab=99.67 E-value=4.4e-16 Score=165.97 Aligned_cols=130 Identities=24% Similarity=0.457 Sum_probs=109.6
Q ss_pred CeeEEEEEEEeecCCccCCC------------------------------------------CCCCCcEEEEEEcCccCC
Q 009307 258 PVGILHVKVVKAMNLKKKDL------------------------------------------LGASDPYVKLKITEDKLP 295 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~ 295 (538)
.-|.|.++|.+|++|+++|. .+++||||+|.+++++
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r-- 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT-- 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence 45889999999999886321 2467999999998654
Q ss_pred eeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCC
Q 009307 296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 375 (538)
Q Consensus 296 ~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~ 375 (538)
..||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..++..+.|+++..... +.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 35999999999999999999999886 468999999999986 5899999999999999999999999976432 23
Q ss_pred CccccEEEEEEEEEeccCCC
Q 009307 376 EKSRGQLVVEFIYKPFKEED 395 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~ 395 (538)
.+..|+|+++++|.|...+.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 55678999999999987763
No 113
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1.3e-15 Score=132.09 Aligned_cols=118 Identities=25% Similarity=0.413 Sum_probs=93.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC----------CeeeeeecCCCCCCeE-ecEEEEEeeCCCCCEEEEE
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----------PSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA 329 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~~T~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 329 (538)
+..|++++|+||+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 67789999999999965432 2579999999999999 9999999853 5789999
Q ss_pred EEeccCCCC---CcccEEEEEeCccCCCCCC---eEEEEecccccccCCCCCCccccEEEEEE
Q 009307 330 VYDWEQVGK---HDKMGMNVVPLKELTPEEP---SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (538)
Q Consensus 330 v~d~~~~~~---d~~lG~~~i~l~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
|||++..++ +++||++.+++.++..+.. ...++.+.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 7999999999999986632 34555553321 2467889998875
No 114
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.67 E-value=6.3e-16 Score=130.79 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=84.9
Q ss_pred EEEEEEEeeecCCCC--CCCCcEEEEEECC-------eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcc
Q 009307 419 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVS 487 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~ 487 (538)
.|+|+|++|++|+.. +.+||||++++.+ ++++|+++.++.||+|||+|+|.+.... ....|.+.|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 378999999999864 6789999999842 2458999999999999999999997531 2246999999987
Q ss_pred cCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307 488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 523 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 523 (538)
. .+.+++||++.++|+++..++....|++|..
T Consensus 81 ~----~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 81 F----ARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred c----cCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 4 4678999999999999998888889999964
No 115
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=1.3e-16 Score=139.17 Aligned_cols=110 Identities=33% Similarity=0.472 Sum_probs=90.9
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (538)
+....|.|.|+|++|+||+..|..|.+||||++++.+.. ....+|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 445679999999999999999988999999999997532 2356999999999999999999998643 356899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
||++..++|++||++.+++... ++....|+++.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 9999988999999999999863 334455666543
No 116
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.3e-16 Score=137.25 Aligned_cols=93 Identities=30% Similarity=0.565 Sum_probs=81.5
Q ss_pred EEEEEEEeecCCccCCCCC--------------CCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCE
Q 009307 261 ILHVKVVKAMNLKKKDLLG--------------ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQA 325 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~ 325 (538)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999865 38999999999999999999975432 579
Q ss_pred EEEEEEeccCCCCCcccEEEEEeCccCCCCC
Q 009307 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356 (538)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
|.|+|||+|..++|++||++.+++.++...+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987654
No 117
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.67 E-value=7.2e-16 Score=128.67 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=80.9
Q ss_pred eEEEEEEEeeecCCCC-------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009307 418 GLLVVIVHEAQDVEGK-------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 490 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~ 490 (538)
|+|.|+|.+|++|+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 7899999999999763 2479999999998888999999999999999999998765444589999999986
Q ss_pred cCCCCCceeEEEEEechhhcccc
Q 009307 491 GLLHPKETLGYIDINLSDVVSNK 513 (538)
Q Consensus 491 g~~~~d~~lG~~~i~l~~l~~~~ 513 (538)
+++|++||++.++|+++..+.
T Consensus 79 --~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 --FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCCCcceEEEEEEHHHHHhhC
Confidence 578999999999999998754
No 118
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=9.5e-16 Score=131.85 Aligned_cols=113 Identities=22% Similarity=0.390 Sum_probs=95.2
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC----CCCCCcEEEEEECC-----eEEE
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRG-----EERK 450 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~k 450 (538)
|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+ ...+
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (123)
T cd08521 1 GEIEFSLSYNY-------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK 55 (123)
T ss_pred CeEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence 88999999974 37789999999999975 25789999999842 3469
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 521 (538)
|++++++.||+|||.|.|.+..... ...|.++|||++. ++++++||++.++|+++..+.....||+|
T Consensus 56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999999999999865322 3489999999875 56789999999999999777777899986
No 119
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=1.5e-16 Score=139.37 Aligned_cols=109 Identities=29% Similarity=0.447 Sum_probs=89.4
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (538)
+....|.|.|+|++|+||+..+..|.+||||++++.+ ......+|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4456789999999999999988889999999999843 33345689999999999999999999753 2356899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||++..+++++||++.+++.+. +...+.|.++.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 9999999999999999999886 33334455543
No 120
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=1.7e-15 Score=130.65 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=96.5
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~ 452 (538)
.|+|++++.|.+ ..+.|.|+|++|++|+.. +.+||||++++. +...+|+
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~ 56 (125)
T cd08386 2 LGRIQFSVSYDF-------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK 56 (125)
T ss_pred ccEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence 699999999975 367899999999999763 578999999993 3457999
Q ss_pred eecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 453 HVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
+++++.||.|||.|.|.+... .....|.++|||++. ++++++||++.++++++........|+.|.
T Consensus 57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999999999975321 123479999999985 567899999999999998777788999985
No 121
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=1.4e-15 Score=131.24 Aligned_cols=116 Identities=20% Similarity=0.329 Sum_probs=93.9
Q ss_pred cccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEECC---eEEE
Q 009307 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EERK 450 (538)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~---~~~k 450 (538)
+.|+|.+++.|.+ ..+.|+|+|++|+||+.. +.+||||++++.. +..|
T Consensus 1 ~~G~l~~~l~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k 55 (128)
T cd08388 1 KLGTLFFSLRYNS-------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK 55 (128)
T ss_pred CCeEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee
Confidence 3699999999985 367899999999999762 5689999999953 3569
Q ss_pred eeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc--ceeceEEEeC
Q 009307 451 TKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLI 522 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 522 (538)
|++++++.||.|||.|.|. +.... ....|.++|||++. ++++++||++.++|+++.-. ++...|.+|+
T Consensus 56 T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 56 TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999994 43211 22379999999875 67899999999999998554 5677787764
No 122
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1.1e-15 Score=134.54 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=90.4
Q ss_pred EEEEEEeeecCCCCC-----------------CCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307 420 LVVIVHEAQDVEGKH-----------------HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (538)
Q Consensus 420 L~v~v~~a~~L~~~~-----------------~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 482 (538)
|.|+|++|++|+..+ .+||||++.+++++.+|++++++.||+|||.|.|.+..++..+.|.++
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999998632 579999999999999999999999999999999998665455689999
Q ss_pred EEEcccCccCCCCCceeEEEEEechhhcccce-------eceEEEeCCCCCcEE
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKR-------INEKYHLIDSKNGRI 529 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~G~I 529 (538)
|||++. +++|++||++.+++.++...+. ..+|+.|.+++.+..
T Consensus 82 v~D~d~----~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 82 IRDWDR----VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEECCC----CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 999986 5689999999999999877542 358999988765543
No 123
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=1.2e-15 Score=131.01 Aligned_cols=114 Identities=25% Similarity=0.311 Sum_probs=95.4
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 452 (538)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +..||||++.+.. ++++|+
T Consensus 2 ~G~l~~sl~Y~~-------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk 56 (124)
T cd08389 2 CGDLDVAFEYDP-------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK 56 (124)
T ss_pred CEEEEEEEEECC-------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence 699999999985 367899999999999863 5789999988743 356999
Q ss_pred eecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 453 HVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
+.++ .||+|||+|.|. +.... .+..|.++|++++. ++++++||++.++|+++..+.....||+|.
T Consensus 57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 8888 999999999998 54321 23479999999985 678999999999999997777788999986
No 124
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=7.7e-16 Score=135.43 Aligned_cols=101 Identities=26% Similarity=0.316 Sum_probs=84.5
Q ss_pred EEEEEEEeeecCCC-CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecC-----------C--C-CCCe
Q 009307 419 LLVVIVHEAQDVEG-KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEE-----------P--P-TNDR 478 (538)
Q Consensus 419 ~L~v~v~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~-----------~--~-~~~~ 478 (538)
.|.|+|++|+||+. .+.+||||++++.+ ..++|++++++.||+|||.|.|.+.. + . ....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 37899999999976 35799999999976 45699999999999999999999951 1 1 1237
Q ss_pred EEEEEEEcccCccCCCCCceeEEEEEechhhccc-ceeceEEEeCC
Q 009307 479 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHLID 523 (538)
Q Consensus 479 l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~ 523 (538)
+.|+||+++. ++.|++||++.|+|.++... .....||+|..
T Consensus 81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEcCCC----CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 8999999875 56899999999999999876 56789999964
No 125
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=5.2e-16 Score=132.61 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=93.0
Q ss_pred EEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEee
Q 009307 381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTK 452 (538)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~ 452 (538)
+|.++++|.|. .|.|+|.|++|+||+.. +.+||||++++.. +++||+
T Consensus 2 el~~sL~Y~p~-------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~ 56 (135)
T cd08692 2 ELQLGTCFQAV-------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTR 56 (135)
T ss_pred eEEEEeeecCc-------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCc
Confidence 68999999974 78999999999999874 4568999999842 356999
Q ss_pred eecCCC-CCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307 453 HVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 453 v~~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I 529 (538)
+++++. ||+|||+|.|.+.....+-.+.|+|+|+++ ++++++||++.++.+.. .....++|.+...+++-.|
T Consensus 57 v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 57 LVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred cEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 999995 699999999999864333378899999875 57899999999999863 2223467777665544333
No 126
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=9.1e-16 Score=129.29 Aligned_cols=98 Identities=26% Similarity=0.337 Sum_probs=83.7
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC----CCEEEEEEEeccC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 335 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 335 (538)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 46899999999998 4789999999999764 48999999999999999999986542 4689999999999
Q ss_pred CCCCcccEEEEEeCccCCCCCCe---EEEEec
Q 009307 336 VGKHDKMGMNVVPLKELTPEEPS---VKTLDL 364 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~l 364 (538)
.++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 98999999999999999876443 346655
No 127
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.65 E-value=3.3e-16 Score=136.07 Aligned_cols=116 Identities=17% Similarity=0.314 Sum_probs=93.4
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT 451 (538)
|+|.++++|.|. .+.|.|+|++|+||+.. +.+||||++++... ++||
T Consensus 2 G~i~~sL~Y~~~-------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT 56 (136)
T cd08406 2 GEILLSLSYLPT-------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKT 56 (136)
T ss_pred cEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCC
Confidence 899999999863 56899999999999763 57899999999431 4589
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 526 (538)
Q Consensus 452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 526 (538)
++++++.||+|||+|.|.+..... +..|.|+|+|++. ++++++||++.++... .+....+|..+..+++
T Consensus 57 ~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~ 126 (136)
T cd08406 57 SVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLR 126 (136)
T ss_pred ccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCC--CChhHHHHHHHHHCCC
Confidence 999999999999999999875322 3479999999985 5789999999998764 3344567777765543
No 128
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.65 E-value=2.2e-15 Score=131.11 Aligned_cols=119 Identities=25% Similarity=0.489 Sum_probs=101.3
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 450 (538)
+|+|.+++.|. .+.|+|+|++|++|+.. +..||||++.+.+ ...+
T Consensus 1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r 53 (131)
T cd04026 1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK 53 (131)
T ss_pred CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence 58999999886 36899999999999853 5789999999963 4579
Q ss_pred eeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I 529 (538)
|++++++.||.|||+|.|.+........|.++|||++. ++.+++||++.++|+++... ....||+|.+.+.|+.
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 99999999999999999998764344689999999875 56789999999999999865 5678999998888864
No 129
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=1.3e-15 Score=128.01 Aligned_cols=100 Identities=24% Similarity=0.425 Sum_probs=86.7
Q ss_pred EEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCcc-cceEEEEecCCCC-CCeEEEEEEEcccCccCC
Q 009307 420 LVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRW-EEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|++|++|+.. +.+||||++++++...+|++++++.||.| ||.|.|.+..... .+.|.++|||++. +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence 57999999999753 46899999999998889999999999999 9999999976432 3589999999985 5
Q ss_pred CCCceeEEEEEechhhcc---cceeceEEEeCC
Q 009307 494 HPKETLGYIDINLSDVVS---NKRINEKYHLID 523 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 523 (538)
+++++||++.+++.++.. +....+||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 788999999999999988 345889999976
No 130
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.65 E-value=7.6e-16 Score=133.17 Aligned_cols=92 Identities=27% Similarity=0.486 Sum_probs=84.0
Q ss_pred CceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..|.|+|.|.+|.||..+ +.+||||.+.+++++.+|++++++.||+|||.|+|.+.++ ...+.++|||+|.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---- 77 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---- 77 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence 368999999999999653 5799999999999999999999999999999999999985 4689999999997
Q ss_pred CCCCceeEEEEEechhhcccc
Q 009307 493 LHPKETLGYIDINLSDVVSNK 513 (538)
Q Consensus 493 ~~~d~~lG~~~i~l~~l~~~~ 513 (538)
+++|+++|.++|+|..+++..
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCcccccceeeeccHHHHHHh
Confidence 789999999999999988754
No 131
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.65 E-value=2.7e-15 Score=129.02 Aligned_cols=118 Identities=26% Similarity=0.408 Sum_probs=93.8
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (538)
..|.|+|.+|+ |...+..+.+||||+++++++ ...+|++++++.||.|||+|.|.+.. .+.|.|+|||++..++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 46899999998 555555789999999999866 24699999999999999999999854 57999999999999999
Q ss_pred cccEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEEEE
Q 009307 340 DKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
++||++.++|.++..... ...|+++.+.. ..+....|+|.+++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence 999999999999886432 23466664321 11357789998875
No 132
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=8.4e-16 Score=131.45 Aligned_cols=99 Identities=28% Similarity=0.425 Sum_probs=86.7
Q ss_pred EEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccC----CC
Q 009307 266 VVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VG 337 (538)
Q Consensus 266 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~ 337 (538)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4799999999988999999999998754 124699999999999999999998765556789999999997 78
Q ss_pred CCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 338 KHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+|++||++.++++++..+.....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777778776
No 133
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=2.3e-16 Score=138.04 Aligned_cols=107 Identities=34% Similarity=0.461 Sum_probs=88.4
Q ss_pred CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEE
Q 009307 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (538)
Q Consensus 256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (538)
....+.|.|+|++|+||+..|..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 34578899999999999999988999999999986432 2356899999999999999999998642 3567999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++..+++++||++.+++.. .+.....|.++
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 99999999999999999998 23344455554
No 134
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.64 E-value=5.2e-15 Score=128.91 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=97.0
Q ss_pred ceEEEEEEEeeecCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
..-|.|.|.+|++|+.+ .+|||++.+++... ||+++.++.||.|+|.|.|.+... ...+.|.|+..+...+-..+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 34689999999999986 48999999999885 999999999999999999976542 35799999865432110125
Q ss_pred CceeEEEEEechhhcccceeceEEEeCCCC-------------CcEEEEEEEEEeC
Q 009307 496 KETLGYIDINLSDVVSNKRINEKYHLIDSK-------------NGRIQIELQWRTA 538 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-------------~G~I~l~~~w~p~ 538 (538)
+++||.+.|++.++..+...++||+|.+.. .++|+++++|+++
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 789999999999999888899999997532 3799999999974
No 135
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.64 E-value=4.7e-16 Score=136.17 Aligned_cols=109 Identities=36% Similarity=0.567 Sum_probs=89.0
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v 330 (538)
+....|.|.|+|++|++|+..+..|.+||||++++.+ +....++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4556799999999999999999889999999999963 3334568999999999999999999986432 35899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||++.+++|++||++.+++.... .....|.++.
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~~--~~~~~W~~~~ 122 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNATG--AELRHWSDML 122 (136)
T ss_pred EeCCCCCCCceeEEEEECCccCC--hHHHHHHHHH
Confidence 99999999999999999997642 3334455543
No 136
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=1.7e-15 Score=130.30 Aligned_cols=108 Identities=31% Similarity=0.490 Sum_probs=90.9
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC---CCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~ 329 (538)
++...+.|+|+|++|++|+..+..+.+||||++++.+. .....+|++++++.||.|||+|.|..... ....+.++
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44456889999999999999888889999999998532 23357999999999999999999963322 25689999
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEe
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 363 (538)
|||++.. .+++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999988 88999999999999999888887764
No 137
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.64 E-value=4e-15 Score=129.65 Aligned_cols=126 Identities=16% Similarity=0.241 Sum_probs=100.4
Q ss_pred CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCC
Q 009307 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (538)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|+|.|..... ...+.|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 4578999999999999865 8999999998764 6999999999999999999986543 578999998765422
Q ss_pred ----CCcccEEEEEeCccCCCCCCeEEEEecccccccCC---CCCCccccEEEEEEEEEec
Q 009307 338 ----KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND---GQNEKSRGQLVVEFIYKPF 391 (538)
Q Consensus 338 ----~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~~~p~ 391 (538)
++++||.+.||+.++..+...+.|+++........ .......+.|++++.|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 57899999999999999888899999864321110 0012445799999999975
No 138
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.64 E-value=4.5e-15 Score=126.98 Aligned_cols=109 Identities=21% Similarity=0.381 Sum_probs=92.1
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|+|++|++|+.. +.+||||++.++++. .+|++++++.||.|||.|.|.+... ...|.++|||++. ++.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~----~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT----LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC----CCC
Confidence 78999999999763 578999999998764 5999999999999999999998652 3689999999985 578
Q ss_pred CceeEEEEEechhhccc-ceeceEEEeCCCC-----CcEEEEEEE
Q 009307 496 KETLGYIDINLSDVVSN-KRINEKYHLIDSK-----NGRIQIELQ 534 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~-----~G~I~l~~~ 534 (538)
|++||++.++++++... ...+.|++|.+.. .|+|+|.+.
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999999988764 3468999997532 799998864
No 139
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=1.2e-15 Score=133.11 Aligned_cols=110 Identities=24% Similarity=0.395 Sum_probs=90.2
Q ss_pred cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEE
Q 009307 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVEL 328 (538)
Q Consensus 254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i 328 (538)
.+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3556789999999999999999988999999999996532 235699999999999999999999874 34679999
Q ss_pred EEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+|||++..+++++||++.+++.....+ ..+.|..+
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~ 123 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEM 123 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHH
Confidence 999999999999999999988755432 22345554
No 140
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=3.3e-15 Score=130.32 Aligned_cols=111 Identities=26% Similarity=0.481 Sum_probs=93.5
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCe-------EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE-------ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
.|+|+|++|++|+.. +.+||||++++.+. ..+|++++++.||.|||.|.|.+... ...|.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 378999999999764 57999999999764 46899999999999999999998652 4579999999985
Q ss_pred CccCCCCCceeEEEEEechhhcccce------eceEEEeCCC-----CCcEEEEEEEE
Q 009307 489 RIGLLHPKETLGYIDINLSDVVSNKR------INEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~-----~~G~I~l~~~w 535 (538)
++.+++||++.++++++..... ..+||+|.+. ..|+|++++.|
T Consensus 79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred ----CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 5688999999999999987532 4589999843 36999999987
No 141
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.4e-15 Score=128.04 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=86.0
Q ss_pred CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCC-
Q 009307 277 LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE- 355 (538)
Q Consensus 277 ~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~- 355 (538)
..|.+||||+++++++. .++|++++++.||.|||+|.|.+.+...+.|.|.|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998653 35899999999999999999999876678899999999988 899999999999998643
Q ss_pred CCeEEEEecccccccCCCCCCccccEEEEEEEEEec
Q 009307 356 EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (538)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3446787763 2357999999999873
No 142
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=1.6e-15 Score=129.68 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=86.6
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCC-CCeEecEEEEEeeCCC-CCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNL-NPEWNEEYNFTVRDPE-SQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~-nP~w~e~f~f~v~~~~-~~~L~i~v 330 (538)
+....|.|+|+|++|+||+..+..+.+||||++++-. .+..+++|+++++|. ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 3446789999999999999876566779999999853 344567999999996 6999999999997543 44788999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.++.+.... ...+.|.+.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m 121 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT 121 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence 999999999999999999987432 234455554
No 143
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.63 E-value=7.4e-16 Score=134.53 Aligned_cols=108 Identities=33% Similarity=0.527 Sum_probs=87.9
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (538)
+....|.|+|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 44567999999999999999998899999999998532 33457899999999999999999998542 245799999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.+++... +.....|.++
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 9999999999999999998733 3334445554
No 144
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=1.5e-15 Score=132.61 Aligned_cols=98 Identities=27% Similarity=0.479 Sum_probs=81.7
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC--ccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (538)
+....|.|.|+|++|++|+..|..|.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 3446689999999999999999889999999999843 223457899999999999999999998542 244799999
Q ss_pred EeccCCCCCcccEEEEEeCccC
Q 009307 331 YDWEQVGKHDKMGMNVVPLKEL 352 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l 352 (538)
||++..+++++||++.+.....
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccC
Confidence 9999999999999998765433
No 145
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=2.8e-15 Score=126.31 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=88.2
Q ss_pred ceEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEcccCccCC
Q 009307 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~---~~~l~v~V~d~~~~~g~~ 493 (538)
...|+|+|++|++|. .+.+||||++++++++++|++++++.||.|||.|.|.+..+.. ...|.++|+|++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 457899999999999 5789999999999999999999999999999999999865421 3579999999875 5
Q ss_pred CCCceeEEEEEechhhccc---ceeceEEEeCC
Q 009307 494 HPKETLGYIDINLSDVVSN---KRINEKYHLID 523 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~ 523 (538)
+++++||++.++|+++... .-..+||+|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 6789999999999999765 34689999975
No 146
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=8.8e-16 Score=134.20 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=97.9
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEe
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT 451 (538)
.|+|.+++.|.|. .+.|.|+|++|+||+.. +.+||||++++.. ++++|
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT 55 (137)
T cd08409 1 LGDIQISLTYNPT-------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT 55 (137)
T ss_pred CcEEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence 4899999999863 67899999999999753 5689999999854 25599
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 452 ~v~~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I 529 (538)
++++++.||+|||.|.|.+...+.. ..|.++|++.+. ++++++||++.++......+....+|..+...++..|
T Consensus 56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i 130 (137)
T cd08409 56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI 130 (137)
T ss_pred ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence 9999999999999999999653333 489999999985 5688999999999765555555677887776554433
No 147
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=7.8e-15 Score=128.09 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=93.5
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC--------CCCeEEEEEEEcc
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--------TNDRLHVEVCSVS 487 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--------~~~~l~v~V~d~~ 487 (538)
.|+|+|++|++|+.. +.+||||++.+++...+|++++++.||.|||.|.|.+...+ ....+.++|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 589999999999763 57999999999999999999999999999999999754321 1246999999998
Q ss_pred cCccCCCCCceeEEEEE-echhhcc---cceeceEEEeCCCC--CcEEEEEEEEEeC
Q 009307 488 SRIGLLHPKETLGYIDI-NLSDVVS---NKRINEKYHLIDSK--NGRIQIELQWRTA 538 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~--~G~I~l~~~w~p~ 538 (538)
. +++|++||++.+ ++..+.. .....+||+|...+ .|+|.|++++.|+
T Consensus 82 ~----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 S----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred C----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 5 567899999987 4433332 24567999997543 6999999999874
No 148
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.62 E-value=4.8e-15 Score=127.43 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=96.1
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC----CCCCcEEEEEEC---CeEEEee
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFR---GEERKTK 452 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~---~~~~kT~ 452 (538)
|+|.+++.|.+ ..+.|.|+|++|++|+.. +.+||||++++. ....+|+
T Consensus 1 G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~ 55 (123)
T cd08390 1 GRLWFSVQYDL-------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55 (123)
T ss_pred CEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence 88999999985 367899999999999753 468999999984 3456899
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+..... ...|.|+|||++. ++++++||++.++|+++........|++|.
T Consensus 56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999999999999999865322 2479999999875 567899999999999998877778999985
No 149
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=176.09 Aligned_cols=117 Identities=27% Similarity=0.577 Sum_probs=106.5
Q ss_pred CceEEEEEEEeeecCCCC-CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 416 GGGLLVVIVHEAQDVEGK-HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
-.|.|+|+|++|+||.+. +.+||||++.++++ ++||++++++.||.|||.|+|.+.+++..+.++++|||++. |
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence 479999999999999865 78999999999955 77999999999999999999999998767789999999985 5
Q ss_pred CCCceeEEEEEechhhcccceeceEEEeCC--CCCcE---EEEEEEEEe
Q 009307 494 HPKETLGYIDINLSDVVSNKRINEKYHLID--SKNGR---IQIELQWRT 537 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~--~~~G~---I~l~~~w~p 537 (538)
+++.+|+++++|.++..++.+.+||+|.+ ++.|+ |++.++|+|
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 45599999999999999999999999997 56899 999999987
No 150
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.62 E-value=6.8e-15 Score=122.23 Aligned_cols=94 Identities=26% Similarity=0.426 Sum_probs=74.3
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec------
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW------ 333 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~------ 333 (538)
|.|+|++|+||+ +.+||||++++.+.. ....+|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 458999999997532 345799999999999999999999963 67999999998
Q ss_pred -cCCCCCcccEEEEEeCcc--CCCCCCeEEEE
Q 009307 334 -EQVGKHDKMGMNVVPLKE--LTPEEPSVKTL 362 (538)
Q Consensus 334 -~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~ 362 (538)
|..++|+++|++.+.|+. +.....+...+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~ 105 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVI 105 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEE
Confidence 456789999888777654 44443333333
No 151
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.61 E-value=8e-16 Score=134.48 Aligned_cols=111 Identities=24% Similarity=0.326 Sum_probs=91.3
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeC--CCCCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (538)
+....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3445688999999999999888 788999999998754 2245689999999999999999999863 3357899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
||++..+++++||++.++......+...+.|.++..
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999999999999999776665555566666543
No 152
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=1.8e-15 Score=132.38 Aligned_cols=121 Identities=20% Similarity=0.363 Sum_probs=97.9
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|.+++.|.| ..|.|.|+|++|++|+.. +.+||||++++.+ ..++
T Consensus 1 ~G~l~~~l~y~~-------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08402 1 LGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK 55 (136)
T ss_pred CcEEEEEeEEcC-------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence 489999999986 367899999999999763 5789999999952 2458
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I 529 (538)
|++++++.||.|||.|.|.+..... ...|.++|||++. ++++++||++.+++... +....+|+++...++..|
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 9999999999999999999865322 2379999999985 67889999999999764 345678888877665555
Q ss_pred E
Q 009307 530 Q 530 (538)
Q Consensus 530 ~ 530 (538)
.
T Consensus 130 ~ 130 (136)
T cd08402 130 A 130 (136)
T ss_pred e
Confidence 4
No 153
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.61 E-value=1.8e-14 Score=124.23 Aligned_cols=112 Identities=19% Similarity=0.274 Sum_probs=94.3
Q ss_pred ceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 417 GGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.++++|+|++|++|... +.+||||++.++++..+|++++++.||.|||.|.|.+.+. ...|.|+|||++. +
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence 46899999999999763 5799999999999999999999999999999999988763 4689999999874 3
Q ss_pred CCCceeEEEEEechhhcccceeceEEEeCC-------CCCcEEEEEEEEEe
Q 009307 494 HPKETLGYIDINLSDVVSNKRINEKYHLID-------SKNGRIQIELQWRT 537 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~-------~~~G~I~l~~~w~p 537 (538)
.|++||+++++++++. ....++|+|.. ...|+|.+++...|
T Consensus 76 -~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4899999999998754 34468899842 13699999988764
No 154
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=1.3e-14 Score=127.26 Aligned_cols=90 Identities=27% Similarity=0.516 Sum_probs=80.9
Q ss_pred eEEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 418 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|+|+|++|++|+.. +.+||||+++++++..+|++++++.||.|||.|.|.+.++ ...+.++|||++. ++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence 7899999999999753 5789999999999999999999999999999999999874 5689999999986 678
Q ss_pred CceeEEEEEechhhcccc
Q 009307 496 KETLGYIDINLSDVVSNK 513 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~ 513 (538)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987643
No 155
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.61 E-value=3e-15 Score=130.96 Aligned_cols=116 Identities=19% Similarity=0.307 Sum_probs=94.5
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC--e---EEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--E---ERK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~--~---~~k 450 (538)
+|+|.++++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ + ..+
T Consensus 1 ~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08404 1 RGELLLSLCYQP-------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK 55 (136)
T ss_pred CCeEEEEEEEeC-------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence 599999999975 366899999999999763 5789999999843 2 458
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 525 (538)
|++++++.||.|||+|.|.+..... ...+.|+|||++. ++++++||++.+++.. ......+|+++.+.+
T Consensus 56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~ 125 (136)
T cd08404 56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPP 125 (136)
T ss_pred CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcC--CCchHHHHHHHHhCC
Confidence 9999999999999999999864322 2468899999986 6789999999999998 344567888886653
No 156
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=1.7e-14 Score=127.01 Aligned_cols=114 Identities=18% Similarity=0.409 Sum_probs=90.2
Q ss_pred EEEEEeeec--CCC---CCCCCcEEEEEE--C---CeEEEeeeecCCCCCcccceEEEEecCCC-------CCCeEEEEE
Q 009307 421 VVIVHEAQD--VEG---KHHTNPYARILF--R---GEERKTKHVKKNRDPRWEEEFQFMLEEPP-------TNDRLHVEV 483 (538)
Q Consensus 421 ~v~v~~a~~--L~~---~~~~dpyv~v~~--~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-------~~~~l~v~V 483 (538)
.++|..|++ ++. .+..||||++++ . .++.||+++++|.||+|||.|.|.+.... ....|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 345555655 554 357999999997 2 24679999999999999999999996531 134799999
Q ss_pred EEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC---CcEEEEEEEEEe
Q 009307 484 CSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWRT 537 (538)
Q Consensus 484 ~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~---~G~I~l~~~w~p 537 (538)
||++. +++.|++||++.++|+.+..+.....|++|.++. +|+++++++-|.
T Consensus 85 ~d~~~---f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGG---FLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCC---cccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 99974 2357999999999999998877778899998543 799999998775
No 157
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=1.9e-14 Score=122.68 Aligned_cols=106 Identities=25% Similarity=0.543 Sum_probs=91.7
Q ss_pred eEEEEEEEeeecCCCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|+|++|++|+.. +.+||||+++++++ ..+|++++++.||.|||.|.|.+... .+.|.|+|||++. +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence 6899999999999763 58999999999774 56999999999999999999998763 4689999999985 5
Q ss_pred CCCceeEEEEEechhhcccceeceEEEeCCCCCcEEE
Q 009307 494 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~ 530 (538)
+.+++||++.+++.++..+ ....||.|.++..+++.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 6789999999999999887 56899999988766655
No 158
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=7.5e-15 Score=127.67 Aligned_cols=105 Identities=36% Similarity=0.574 Sum_probs=90.7
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCC-CCCEEEEEEEeccCC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVYDWEQV 336 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~~ 336 (538)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22356999999999999999999998754 256899999999988
Q ss_pred CCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 337 GKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+++++||++.++++++... ....|+++.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 8999999999999999865 566788874
No 159
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=3.2e-14 Score=122.86 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=92.1
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
.++|+|.+|++|+.. +.+||||++.+++. ..+|++++++.||.|||.|.|.+... ....|.++|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence 588999999999763 57899999998643 46999999999999999999999874 34689999999975
Q ss_pred CCCCceeEEEEEechhhccc---ceeceEEEeCCCCCcEEEEEEEEE
Q 009307 493 LHPKETLGYIDINLSDVVSN---KRINEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 493 ~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~G~I~l~~~w~ 536 (538)
++.+++||++.++|+++... .....|++|. ++|+|+|++.+-
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--~~g~i~l~~~~~ 121 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--TQGRLLLRVSME 121 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--CCCeEEEEEEEe
Confidence 46789999999999887542 2456899996 389999988763
No 160
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=3e-15 Score=131.01 Aligned_cols=117 Identities=19% Similarity=0.374 Sum_probs=94.0
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC--C---eEEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~---~~~k 450 (538)
+|+|.++++|.+ ..+.|.|+|++|+||+.. +.+||||++++. + ...+
T Consensus 1 ~G~l~~sl~y~~-------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k 55 (136)
T cd08405 1 RGELLLSLCYNP-------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK 55 (136)
T ss_pred CcEEEEEEEEcC-------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence 599999999985 377899999999999753 579999999983 2 2458
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 526 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 526 (538)
|++++++.||.|||.|.|.+..... ...|.|+|||++. ++++++||++.+++.+. +....+|+++...++
T Consensus 56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~ 126 (136)
T cd08405 56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR 126 (136)
T ss_pred CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence 9999999999999999999863222 3479999999975 67889999999999875 334467777765543
No 161
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=4.5e-15 Score=129.66 Aligned_cols=120 Identities=20% Similarity=0.357 Sum_probs=99.8
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT 451 (538)
|+|.+.++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+. ..+|
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T 55 (134)
T cd00276 1 GELLLSLSYLP-------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT 55 (134)
T ss_pred CeEEEEEEeeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence 88999999985 367899999999999863 57899999999653 4589
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEE
Q 009307 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~ 530 (538)
++++++.||.|||+|.|.+..... ...|.|+|||.+. ++++++||++.+++++ .+...++|++|.++++..|.
T Consensus 56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~ 129 (134)
T cd00276 56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA 129 (134)
T ss_pred cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence 999999999999999999876421 3589999999985 4678999999999999 55567899999887655554
No 162
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.59 E-value=2.2e-14 Score=123.09 Aligned_cols=107 Identities=23% Similarity=0.418 Sum_probs=88.3
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEEC-CeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFR-GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+.. +.+||||+++++ .+.++|++++++.||.|||.|.|.+.. .+.|.++|||++. ++.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence 78999999999764 578999999997 556799999999999999999999965 4689999999875 343
Q ss_pred --CceeEEEEEechhhcccc-eeceEEEeCCCC-------CcEEEEEE
Q 009307 496 --KETLGYIDINLSDVVSNK-RINEKYHLIDSK-------NGRIQIEL 533 (538)
Q Consensus 496 --d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~-------~G~I~l~~ 533 (538)
+++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 579999999999998654 346799995432 47777665
No 163
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=2.2e-15 Score=131.70 Aligned_cols=110 Identities=34% Similarity=0.465 Sum_probs=91.9
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 330 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v 330 (538)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 334568999999999999998888899999999997642 23468999999999999999999987543 57899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
||++..+++++||++.+++++ .+.....|+++..
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 999988899999999999999 4445566776643
No 164
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.58 E-value=2.9e-14 Score=123.09 Aligned_cols=111 Identities=23% Similarity=0.448 Sum_probs=90.3
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc----
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG---- 491 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g---- 491 (538)
.|+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||.|.|.+... .+.+.++|||++....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 689999999999864 4789999999988888999999999999999999998653 3589999999874200
Q ss_pred --C-CCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEE
Q 009307 492 --L-LHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIEL 533 (538)
Q Consensus 492 --~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~ 533 (538)
+ .+.+++||++.+++.++.. ....||.|.... +|+|.+++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 0 1368999999999998753 347899998532 68988864
No 165
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=3e-14 Score=121.30 Aligned_cols=114 Identities=23% Similarity=0.366 Sum_probs=87.8
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEEEeccCCCCC
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKH 339 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~d 339 (538)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358999888 99999999999987642 35688888888766666
Q ss_pred cccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
..+|.+. +..+..+...+.|++|.... ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666655 55555566677888874321 124678999999876
No 166
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.58 E-value=1.3e-14 Score=122.00 Aligned_cols=95 Identities=27% Similarity=0.525 Sum_probs=79.5
Q ss_pred EEEeecCCccCCCCCCCCcEEEEEEcCcc---CCeeeeeecCCCCCCeEecEEEEEeeCCC----CCEEEEEEEeccCCC
Q 009307 265 KVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVG 337 (538)
Q Consensus 265 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~~ 337 (538)
-.++|++|+..|..|.+||||++++.+.. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 35699999999999999999999987642 234799999999999999 7888764322 579999999999999
Q ss_pred CCcccEEEEEeCccCCCCCCeEE
Q 009307 338 KHDKMGMNVVPLKELTPEEPSVK 360 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
+|++||++.++++++......+.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCCceE
Confidence 99999999999999986654443
No 167
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.58 E-value=7.4e-15 Score=128.21 Aligned_cols=120 Identities=18% Similarity=0.332 Sum_probs=94.6
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 451 (538)
|+|.+++.|.| ..+.|+|+|++|++|+.. +.+||||++++.. ..++|
T Consensus 1 g~l~~~~~y~~-------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT 55 (134)
T cd08403 1 GELMFSLCYLP-------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT 55 (134)
T ss_pred CeEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence 88999999986 378899999999999863 5789999999842 24589
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEEE
Q 009307 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 452 ~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~ 530 (538)
++++++.||.|||.|.|.+..... ...|.++|||++. ++++++||++.+++... +....+|+++...++-.+.
T Consensus 56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~~~~~~~ 129 (134)
T cd08403 56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNAD--GQGREHWNEMLANPRKPIA 129 (134)
T ss_pred CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCCC--CchHHHHHHHHHCCCCeee
Confidence 999999999999999999864322 2369999999985 57899999999998732 3345678887665444433
No 168
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=9.9e-16 Score=148.91 Aligned_cols=107 Identities=33% Similarity=0.549 Sum_probs=91.5
Q ss_pred CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (538)
....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+.... ...|.++|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 456899999999999999999999999999996543 23468999999999999999999997543 678999999999
Q ss_pred CCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+.+++||+|..++.+++|.... ...|+.++
T Consensus 258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlL 287 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLL 287 (683)
T ss_pred ccccccccceecccHHHHhhcc-hhhHHHHh
Confidence 9999999999999999998653 34455553
No 169
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.58 E-value=4.6e-14 Score=122.23 Aligned_cols=119 Identities=29% Similarity=0.411 Sum_probs=93.7
Q ss_pred EEEEEEEeecCCccCC--CCCCCCcEEEEEEcCcc---CCeeeeeecCCCC-CCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307 261 ILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK---LPSKKTTVKHKNL-NPEWNEEYNFTVRDPESQAVELAVYDWE 334 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~-nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (538)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ....+|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 2456899887766 9999999999998766678999999999
Q ss_pred CCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009307 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.. ++++||++.++++++..+. .++++.... .+....|.|.+.+.+
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~-----~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK-----GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC-----CCCCcceeEEEEEEE
Confidence 87 8999999999999996542 345553211 112456888888765
No 170
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.57 E-value=2.4e-14 Score=122.45 Aligned_cols=94 Identities=27% Similarity=0.414 Sum_probs=81.1
Q ss_pred CCceEEEEEEEeeecCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307 415 AGGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
...|.|+|+|++|++|+. .+.+||||+++++++.++|++++++.||+|||+|.|..........|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~---- 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN---- 100 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----
Confidence 356899999999999975 25789999999999989999999999999999999986443345689999999986
Q ss_pred CCCCceeEEEEEechhhccc
Q 009307 493 LHPKETLGYIDINLSDVVSN 512 (538)
Q Consensus 493 ~~~d~~lG~~~i~l~~l~~~ 512 (538)
++.|++||++.++|.....+
T Consensus 101 ~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCCCeeEEEEEEecCCcee
Confidence 57899999999999977643
No 171
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=7.2e-15 Score=128.31 Aligned_cols=120 Identities=18% Similarity=0.307 Sum_probs=94.7
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEE
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERK 450 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~k 450 (538)
|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++|
T Consensus 2 ~ei~~sL~Y~~-------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k 56 (138)
T cd08408 2 PELLLGLEYNA-------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK 56 (138)
T ss_pred CeEEEEeEEcC-------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence 78999999985 378899999999999763 5789999999952 2359
Q ss_pred eeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCcEE
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I 529 (538)
|++++++.||+|||+|.|.+.... ....|.++||+.+. ++++++||++.+++...-. ....+|+.+..+++-.|
T Consensus 57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV 131 (138)
T ss_pred ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence 999999999999999999997532 23489999999986 5789999999999875432 23357887766544333
No 172
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.57 E-value=6.2e-14 Score=120.65 Aligned_cols=104 Identities=26% Similarity=0.479 Sum_probs=90.1
Q ss_pred eEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCC--CCCeEEEEEEEcccCcc
Q 009307 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIG 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~g 491 (538)
|.|.|+|++|++|+.. +.+||||++++++..++|+++++ +.||.|||.|.|.+.... ....|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999763 47999999999988889998875 899999999999998752 24589999999975
Q ss_pred CCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307 492 LLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525 (538)
Q Consensus 492 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 525 (538)
++.+++||++.+++.++..++....|++|...+
T Consensus 78 -~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 567899999999999999888888999997643
No 173
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.57 E-value=3.3e-14 Score=123.80 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=88.5
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-------eE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-------EE 448 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-------~~ 448 (538)
.|+|.+++.|.+ ..+.|+|+|++|++|+.. +.+||||++++.+ ..
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~ 56 (133)
T cd04009 2 YGVLTVKAYYRA-------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPT 56 (133)
T ss_pred ceEEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccc
Confidence 699999999974 356899999999999763 5799999999953 35
Q ss_pred EEeeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307 449 RKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 511 (538)
Q Consensus 449 ~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~ 511 (538)
++|++++++.||+|||.|.|.+...+ ....|.++|||++. ++++++||++.++|+++..
T Consensus 57 ~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 57 PKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCCc
Confidence 69999999999999999999987531 23589999999985 5679999999999999975
No 174
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.56 E-value=2.6e-14 Score=120.38 Aligned_cols=98 Identities=22% Similarity=0.473 Sum_probs=81.7
Q ss_pred eEEEEEEEeeecCCC---C-CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccc
Q 009307 418 GLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~ 488 (538)
|+|+|+|++|++|+. . +.+||||++++.+ ...+|++++++.||.|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999975 2 5789999999853 3469999999999999999999886431 23589999999986
Q ss_pred CccCCCCCceeEEEEEechhhcccceeceEEEeC
Q 009307 489 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 522 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 522 (538)
++.|++||++.++++++... .+|+++.
T Consensus 81 ----~~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 81 ----FTADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred ----CCCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 57789999999999999843 3687765
No 175
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.56 E-value=1.1e-14 Score=127.12 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=91.4
Q ss_pred cEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009307 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 451 (538)
|+|.++++|.| ..|.|.|+|++|++|+.. +.+||||++++.. +.++|
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT 55 (135)
T cd08410 1 GELLLSLNYLP-------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT 55 (135)
T ss_pred CcEEEEEEECC-------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence 88999999986 367899999999999763 5799999999832 24699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525 (538)
Q Consensus 452 ~v~~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 525 (538)
++++++.||.|||.|.|.+...... ..+.++|||++. .+++++||++.++...... ....+|+.+...+
T Consensus 56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~~ 125 (135)
T cd08410 56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNSQ 125 (135)
T ss_pred ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhCC
Confidence 9999999999999999998643232 379999999985 5789999999877644322 2346788776653
No 176
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=9.2e-15 Score=127.48 Aligned_cols=105 Identities=14% Similarity=0.314 Sum_probs=85.3
Q ss_pred CceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEc
Q 009307 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSV 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~ 486 (538)
..+.|.|+|++|++|+.. +.+||||++++.+ ...+|++++++.||.|||.|.|.+..... ...|.++|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 378999999999999863 5789999999953 24599999999999999999999875322 34799999998
Q ss_pred ccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCC
Q 009307 487 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 526 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 526 (538)
+. .+++++||++.++++. .+....+||++...++
T Consensus 91 d~----~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 91 DI----GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD 124 (133)
T ss_pred CC----CCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence 75 4678999999999986 3345578998876543
No 177
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.55 E-value=8.2e-14 Score=118.61 Aligned_cols=109 Identities=22% Similarity=0.350 Sum_probs=85.2
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCc
Q 009307 420 LVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKE 497 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~ 497 (538)
|.|+|++|++|+..+.+||||+++++++. .+|+++++ .||.|||+|.|.+...... ..+.+.++|.+. +..+.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence 68999999999887889999999998854 69999989 9999999999999764212 367778887763 34556
Q ss_pred eeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307 498 TLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 498 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w 535 (538)
.+|.+.+. .+..+...++||+|.+.. .|+|+++++|
T Consensus 77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 67766554 444466678999997632 6999999875
No 178
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.54 E-value=4.8e-14 Score=121.57 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=89.7
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeec-CCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCcc
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVK-KNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIG 491 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~g 491 (538)
|+|+|++|++|+.. +.+||||++++++ +..+|+++. ++.||.|||.|.|.+.... ....|.++|||++.
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~--- 78 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP--- 78 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC---
Confidence 78999999999863 5799999999988 778999875 5899999999999997752 15689999999875
Q ss_pred CCCCCceeEEEEEechhhcccce-----eceEEEeCCC---CCcEEEE
Q 009307 492 LLHPKETLGYIDINLSDVVSNKR-----INEKYHLIDS---KNGRIQI 531 (538)
Q Consensus 492 ~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~---~~G~I~l 531 (538)
++.+++||++.+++.++..... ...||+|.+. +.|.|++
T Consensus 79 -~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 -SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred -CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 4678999999999999998654 3689999764 3687763
No 179
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.52 E-value=8.8e-14 Score=121.44 Aligned_cols=102 Identities=28% Similarity=0.409 Sum_probs=87.5
Q ss_pred EEEEEEeeecCCCC--CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEecCCC--------------CCCeE
Q 009307 420 LVVIVHEAQDVEGK--HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEPP--------------TNDRL 479 (538)
Q Consensus 420 L~v~v~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--------------~~~~l 479 (538)
|+|.|++|++|+.. +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999754 689999999998 66789999999999999999999987641 23489
Q ss_pred EEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC
Q 009307 480 HVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 525 (538)
Q Consensus 480 ~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 525 (538)
.|+|||++. ++.+++||++.+++.++........||+|...+
T Consensus 81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASM----VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCc----CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 999999985 467899999999999998877788999998653
No 180
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.52 E-value=5.9e-14 Score=111.84 Aligned_cols=85 Identities=35% Similarity=0.630 Sum_probs=76.8
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|+|+|++|+||+..+..+..||||++++.+......+|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998878899999999999865445799999999999999999999877777789999999999988999
Q ss_pred cEEEE
Q 009307 342 MGMNV 346 (538)
Q Consensus 342 lG~~~ 346 (538)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 181
>PLN03008 Phospholipase D delta
Probab=99.52 E-value=1.3e-13 Score=147.32 Aligned_cols=98 Identities=19% Similarity=0.450 Sum_probs=86.2
Q ss_pred CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc
Q 009307 434 HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN 512 (538)
Q Consensus 434 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~ 512 (538)
+.+||||++.+++++ .||++++++.||+|||.|.|.+.++ ...|.++|+|++. ++ ++.||++.|+++++..+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence 468999999998764 4999999999999999999999874 3589999999885 54 68999999999999998
Q ss_pred ceeceEEEeCCC------CCcEEEEEEEEEeC
Q 009307 513 KRINEKYHLIDS------KNGRIQIELQWRTA 538 (538)
Q Consensus 513 ~~~~~~~~L~~~------~~G~I~l~~~w~p~ 538 (538)
...+.|++|.+. ++|+|+++++|+|+
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 888999999764 25899999999995
No 182
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=4.8e-14 Score=164.06 Aligned_cols=122 Identities=21% Similarity=0.414 Sum_probs=103.5
Q ss_pred CCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEecc
Q 009307 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (538)
Q Consensus 256 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (538)
....|.|.|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|+|.+.++. .+.|+++|||+|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 345799999999999998 4468999999999997543 48999999999999999999998764 467999999999
Q ss_pred CCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccE---EEEEEEEEe
Q 009307 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQ---LVVEFIYKP 390 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 390 (538)
.+++| .||.+++++.++..++....|+++.+ +++..|+ |.+++.|.+
T Consensus 2052 ~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 98554 89999999999998888888888753 2345677 999998864
No 183
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.51 E-value=3.6e-13 Score=115.83 Aligned_cols=108 Identities=25% Similarity=0.478 Sum_probs=88.5
Q ss_pred EEEEEEEeeecCCC--CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 419 LLVVIVHEAQDVEG--KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
.|.|+|.+|+.+.. .+.+||||+++++++ ..+|++++++.||.|||.|.|.+.. .+.|.++|||++. ++.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence 58899999984433 246999999999887 7899999999999999999999864 3689999999986 567
Q ss_pred CceeEEEEEechhhcccce-----eceEEEeCCCC------CcEEEEEE
Q 009307 496 KETLGYIDINLSDVVSNKR-----INEKYHLIDSK------NGRIQIEL 533 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~------~G~I~l~~ 533 (538)
+++||++.++|+++..... ...|++|..+. .|++.+++
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 8999999999999986431 34589986433 69888875
No 184
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-14 Score=137.58 Aligned_cols=224 Identities=23% Similarity=0.389 Sum_probs=165.2
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEE--eeCC-CCCEEEEE
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT--VRDP-ESQAVELA 329 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~--v~~~-~~~~L~i~ 329 (538)
++.....+..++.+|++|+.++.++..|||++..+.+.. ..+.+|++..+++||.|+|+-... ..+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 445567889999999999999999999999999997632 334688899999999999775443 3322 24568899
Q ss_pred EEeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccccc--ccCCCCCCccccEEEEEEEEEeccCCCCCCccccccccc
Q 009307 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM--DLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQ 407 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~--~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~ 407 (538)
|.|.+.+..++++|+..+++..+...+.+.+..-|.+.+ ...+......+|++.+++.|-.
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s----------------- 230 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS----------------- 230 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence 999999999999999999999998776543322121111 1112222367888888887753
Q ss_pred cCCCCCCCCceEEEEEEEeeecCCC---CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CCe
Q 009307 408 KAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDR 478 (538)
Q Consensus 408 ~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~ 478 (538)
...-+.|++.+|..|.. ++.+||||+.++.. .+++|.+.+.+.+|.|++.|.|.+..... ..+
T Consensus 231 --------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 231 --------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred --------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 23446778888887754 46899999999853 23599999999999999999999876433 237
Q ss_pred EEEEEEEcccCccCCCCCceeEEEEEech
Q 009307 479 LHVEVCSVSSRIGLLHPKETLGYIDINLS 507 (538)
Q Consensus 479 l~v~V~d~~~~~g~~~~d~~lG~~~i~l~ 507 (538)
+.|.|||++.+ ...+.+|-....+.
T Consensus 303 v~lsvgd~~~G----~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 303 VALSVGDYDIG----KSNDSIGGSMLGGY 327 (362)
T ss_pred EEEeecccCCC----cCccCCCccccccc
Confidence 89999999853 35677776655543
No 185
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.49 E-value=2.9e-13 Score=119.52 Aligned_cols=98 Identities=27% Similarity=0.436 Sum_probs=83.0
Q ss_pred CCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe-----------------------------EEEeeeecCCCCCc
Q 009307 414 PAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----------------------------ERKTKHVKKNRDPR 461 (538)
Q Consensus 414 ~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----------------------------~~kT~v~~~t~nP~ 461 (538)
....+.|.|+|++|++|... +.+||||++.+... ..+|++++++.||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 34689999999999999753 67999999998531 25899999999999
Q ss_pred ccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307 462 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521 (538)
Q Consensus 462 w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 521 (538)
|||.|.|.+... ....|.++|||++ +++||++.++++++.. ...++||+|
T Consensus 104 WnE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999764 3568999999885 5899999999999984 457899986
No 186
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=3.8e-13 Score=115.53 Aligned_cols=106 Identities=21% Similarity=0.359 Sum_probs=87.0
Q ss_pred ccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009307 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|.+++.|.+ ..+.|+|+|++|++|+.. +.+||||++++.+ ...+
T Consensus 1 ~G~~~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r 55 (123)
T cd04035 1 LGTLEFTLLYDP-------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR 55 (123)
T ss_pred CcEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence 489999999985 367899999999999763 5789999999842 3569
Q ss_pred eeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccce
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 514 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~ 514 (538)
|++++++.||.|||.|.|..... .....+.++|||++. + ++++||++.++|+++..+..
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCCcc
Confidence 99999999999999999963321 123589999999975 4 68999999999999987653
No 187
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.49 E-value=3.4e-13 Score=114.45 Aligned_cols=100 Identities=27% Similarity=0.402 Sum_probs=86.3
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+.. +.+||||++.+++.. .+|+++.++.||.|||.|.|.+... ....+.++|||++. ++.
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence 57899999999763 478999999997644 6999999999999999999999764 45689999999975 567
Q ss_pred CceeEEEEEechhhcccceeceEEEeCCC
Q 009307 496 KETLGYIDINLSDVVSNKRINEKYHLIDS 524 (538)
Q Consensus 496 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 524 (538)
+++||++.+++.++..+.....|++|...
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 89999999999999888778899999754
No 188
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.48 E-value=7.1e-13 Score=115.06 Aligned_cols=111 Identities=20% Similarity=0.351 Sum_probs=86.8
Q ss_pred EEEEEEEeeecCCCC--CCCCcEEEEEECC-------------eEEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEEE
Q 009307 419 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------------EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHVE 482 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-------------~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~~l~v~ 482 (538)
+..|++++|+||+.. +.+||||++++.. +.++|++++++.||+| ||.|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 467899999999742 6899999999952 3579999999999999 9999999853 3689999
Q ss_pred EEEcccCccCCCCCceeEEEEEechhhcccc---eeceEEEeCCCC-----CcEEEEEE
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNK---RINEKYHLIDSK-----NGRIQIEL 533 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~-----~G~I~l~~ 533 (538)
|||++.. +-...+++||++.+++++++... ....||+|.... +|+|.+++
T Consensus 79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9997532 10112789999999999998753 356789986432 58887765
No 189
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=3.8e-14 Score=138.04 Aligned_cols=121 Identities=25% Similarity=0.491 Sum_probs=101.3
Q ss_pred CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCC---CCCCCcEEEEEECC-----e
Q 009307 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~ 447 (538)
...+|+|.+.+... ...|+|+|.+|+||-. +|.+||||++.+-. .
T Consensus 165 tE~RGrl~l~~~~~---------------------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 165 TERRGRLYLEAHIK---------------------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES 217 (683)
T ss_pred hhhcceEEEEEEec---------------------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence 45789999988663 4579999999999955 57899999999943 3
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCCCc
Q 009307 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 527 (538)
Q Consensus 448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G 527 (538)
+++|++++.++||+|||+|+|.+.....+..|.|+|||+++ .++++++|+.++.+++|+... .+.||.|.....|
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEG 292 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEG 292 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhhcc-hhhHHHHhhhhcC
Confidence 46999999999999999999999876556699999999997 578999999999999998754 4789998765545
Q ss_pred E
Q 009307 528 R 528 (538)
Q Consensus 528 ~ 528 (538)
+
T Consensus 293 E 293 (683)
T KOG0696|consen 293 E 293 (683)
T ss_pred c
Confidence 4
No 190
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.46 E-value=1.4e-12 Score=108.43 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=77.5
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc---c
Q 009307 420 LVVIVHEAQDVEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI---G 491 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~---g 491 (538)
|.|+|++|++|++ .+||||+++++. ...+|+++++|.||+|||.|+|.+.. ...+.+.|||++.+. .
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999974 599999999963 24699999999999999999999964 358999999984110 0
Q ss_pred CCCCCceeEEEEEech--hhcccceeceEEEeCCCCCcEEEEEEE
Q 009307 492 LLHPKETLGYIDINLS--DVVSNKRINEKYHLIDSKNGRIQIELQ 534 (538)
Q Consensus 492 ~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~L~~~~~G~I~l~~~ 534 (538)
..+.|+.+|++.+.|+ .+...+.....+.|.+ =+|.++++
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~ 117 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIK 117 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEe
Confidence 1467899977777664 3444444445565542 35555554
No 191
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.43 E-value=8.1e-13 Score=113.46 Aligned_cols=88 Identities=22% Similarity=0.363 Sum_probs=75.9
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeE--EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~--~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
+++|.|++|++|+.. +.+||||++++++.. .+|++++++.||.|||.|.|.+..+ ..+.|.++|||++. +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence 478999999999763 579999999998865 4788899999999999999998654 45689999999985 5
Q ss_pred CCCceeEEEEEechhhcc
Q 009307 494 HPKETLGYIDINLSDVVS 511 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~ 511 (538)
+.+++||++.++|++...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 789999999999998764
No 192
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.2e-12 Score=132.82 Aligned_cols=135 Identities=24% Similarity=0.327 Sum_probs=113.2
Q ss_pred CCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCe---E
Q 009307 375 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE---E 448 (538)
Q Consensus 375 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~ 448 (538)
+....|+|.+++.|.. ....|.|+|.+|++|+.. +.+||||++++... +
T Consensus 149 ~~~~~G~l~fsl~Yd~-------------------------~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k 203 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDF-------------------------ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGK 203 (421)
T ss_pred cceeeeeEEEEEEecc-------------------------cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCc
Confidence 3567899999999984 367899999999999874 36899999999653 4
Q ss_pred EEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC---
Q 009307 449 RKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS--- 524 (538)
Q Consensus 449 ~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~--- 524 (538)
.+|++.++++||+|||+|.|.+.... ....|.+.|||.++ |+++++||.+.++|..+........|.++...
T Consensus 204 ~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~ 279 (421)
T KOG1028|consen 204 FKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD 279 (421)
T ss_pred ceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCccccccccceeeeccccccCC
Confidence 69999999999999999999976432 34589999999997 89999999999999988776666779998753
Q ss_pred ---CCcEEEEEEEEEeC
Q 009307 525 ---KNGRIQIELQWRTA 538 (538)
Q Consensus 525 ---~~G~I~l~~~w~p~ 538 (538)
..|+|.++++|.|.
T Consensus 280 ~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 280 SEELAGELLLSLCYLPT 296 (421)
T ss_pred cccccceEEEEEEeecC
Confidence 13799999999884
No 193
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.41 E-value=5.6e-12 Score=109.10 Aligned_cols=108 Identities=23% Similarity=0.345 Sum_probs=87.9
Q ss_pred EEEEEEEeeecCCC-----CCCCCcEEEEEEC------CeEEEeeeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307 419 LLVVIVHEAQDVEG-----KHHTNPYARILFR------GEERKTKHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (538)
Q Consensus 419 ~L~v~v~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
.|+|+|++|++|+. .+..||||++++. ....+|++++++. ||.|||.|.|.+..+ ....|.++|+|.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 68999999999975 3478999999994 3457999988776 999999999999864 345799999998
Q ss_pred ccCccCCCCCceeEEEEEechhhcccceeceEEEeCCC-----CCcEEEEEEEE
Q 009307 487 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~I~l~~~w 535 (538)
+. + ++++||++.++++++..+ .+|++|.+. ..|+|.+.++.
T Consensus 82 ~~----~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DS----G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC----C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 74 4 789999999999998543 368898753 25899988875
No 194
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.41 E-value=1.9e-12 Score=110.64 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=80.4
Q ss_pred EEEeeecCCCC---CCCCcEEEEEECCeE-------EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307 423 IVHEAQDVEGK---HHTNPYARILFRGEE-------RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (538)
Q Consensus 423 ~v~~a~~L~~~---~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..++|++|+.. +.+||||++++.+.. .+|++++++.||+|||.|.|.+... ..+.+.++|||++...+.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence 34789999763 578999999997653 6999999999999999999986543 345899999999851000
Q ss_pred CCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307 493 LHPKETLGYIDINLSDVVSNKRINEKYHLID 523 (538)
Q Consensus 493 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 523 (538)
++++++||++.+++++++.+.....+++|..
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 4578999999999999998776678999843
No 195
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.4e-12 Score=132.32 Aligned_cols=125 Identities=26% Similarity=0.442 Sum_probs=100.8
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEecc
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 334 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (538)
..+....++++|++|.+|..+|..|++||||.+.++..+ +||+++...+||+|||.|+|..++. ++.+++.|||+|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCc
Confidence 345678899999999999999999999999999999765 4899999999999999999999886 789999999998
Q ss_pred CC-----------CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 335 QV-----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 335 ~~-----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+. ..|||+|+..|.+..|...-. .|+.+-+..+ .+...|.|++.+...-
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgemd--vwynlekrtd-----ksavsgairlhisvei 425 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMD--VWYNLEKRTD-----KSAVSGAIRLHISVEI 425 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccchh--hhcchhhccc-----hhhccceEEEEEEEEE
Confidence 42 368999999999998876544 4554433221 2567887776665443
No 196
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=6.4e-12 Score=107.52 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=80.4
Q ss_pred EEEEEEeecCCccCC--CCC--CCCcEEEEEEcCccCCeeeeeecCCCCC--CeEecEEEEEeeCC--------------
Q 009307 262 LHVKVVKAMNLKKKD--LLG--ASDPYVKLKITEDKLPSKKTTVKHKNLN--PEWNEEYNFTVRDP-------------- 321 (538)
Q Consensus 262 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~~~~~~~~~~~T~v~~~t~n--P~w~e~f~f~v~~~-------------- 321 (538)
|+|.|.+|++++..+ ..| .+||||++.+.+....+++|.|..+++| |.||+.|.|.+.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966443 356 4999999999886555679999999999 99999999887641
Q ss_pred ---------CCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCC
Q 009307 322 ---------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356 (538)
Q Consensus 322 ---------~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
....|.++|||.|.+++|++||++.++|+.+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 25689999999999999999999999999887653
No 197
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.32 E-value=1.4e-11 Score=101.08 Aligned_cols=95 Identities=43% Similarity=0.707 Sum_probs=82.2
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|.|+|++|++|...+..+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999987765688999999998752224689999999999999999999987657899999999998778899
Q ss_pred cEEEEEeCccCCCCC
Q 009307 342 MGMNVVPLKELTPEE 356 (538)
Q Consensus 342 lG~~~i~l~~l~~~~ 356 (538)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987664
No 198
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.30 E-value=9.6e-12 Score=132.61 Aligned_cols=91 Identities=25% Similarity=0.448 Sum_probs=82.2
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (538)
-.++|.|++|-+|...|.+|.+|||+++.++++.. ..++..+.+|+||+|++.|++....+....+.++|||+|..+.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 45779999999999999999999999999998764 24778899999999999999998888788999999999999999
Q ss_pred cccEEEEEeCcc
Q 009307 340 DKMGMNVVPLKE 351 (538)
Q Consensus 340 ~~lG~~~i~l~~ 351 (538)
+.+|+..++|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999875
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=3.3e-11 Score=101.32 Aligned_cols=93 Identities=17% Similarity=0.377 Sum_probs=72.9
Q ss_pred EEEEeeecCCCC---CCCCcEEEEEECCe------EEEeeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccC
Q 009307 422 VIVHEAQDVEGK---HHTNPYARILFRGE------ERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSR 489 (538)
Q Consensus 422 v~v~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~ 489 (538)
+..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+.... ....|.++|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 345689999764 57999999998653 3699999999999999 6888765322 24589999999986
Q ss_pred ccCCCCCceeEEEEEechhhcccceeceEEEe
Q 009307 490 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL 521 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 521 (538)
+++|++||+++++++++..+. .++|.+
T Consensus 82 ---~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 ---SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred ---CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 578999999999999998543 345544
No 200
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=3.4e-11 Score=98.49 Aligned_cols=99 Identities=41% Similarity=0.637 Sum_probs=83.3
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (538)
|.|+|++|++|......+..+|||.+.+.+. ...+|+++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4789999999988666678999999999872 23689999999999999999999987457889999999998878899
Q ss_pred cEEEEEeCccCC-CCCCeEEEE
Q 009307 342 MGMNVVPLKELT-PEEPSVKTL 362 (538)
Q Consensus 342 lG~~~i~l~~l~-~~~~~~~~~ 362 (538)
+|++.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999998 444444444
No 201
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.24 E-value=4.4e-11 Score=96.14 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=74.5
Q ss_pred HHHHHhhch-hHH-HHHHHHHHHHHHHHHHh-cCCCceeeeEEEeEeeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEeC
Q 009307 75 NKFLELMWP-YLD-KAICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWAA 150 (538)
Q Consensus 75 N~~l~~~W~-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~l~~~~~~~~ 150 (538)
|.+++|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++|+.+. .++++.+|+|+.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 778888765 333 78899999999999998 68999 99999999999999999999999874 455699999999999
Q ss_pred CCCeEEEEEE
Q 009307 151 NPNVTIGVKA 160 (538)
Q Consensus 151 ~~~i~l~~~~ 160 (538)
+..+++++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999988765
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.21 E-value=5.3e-11 Score=94.61 Aligned_cols=79 Identities=34% Similarity=0.632 Sum_probs=68.5
Q ss_pred EEEEEEeeecCCC---CCCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 420 LVVIVHEAQDVEG---KHHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|+|+|++|++|+. .+..||||++.+++ ...+|++++++.+|.|+|.|.|.+... ..+.|.|+|||++. +
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC----C
Confidence 6899999999987 35789999999987 668999999999999999999997765 34569999999986 4
Q ss_pred CCCceeEEEE
Q 009307 494 HPKETLGYID 503 (538)
Q Consensus 494 ~~d~~lG~~~ 503 (538)
+.+++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 6699999874
No 203
>PLN02270 phospholipase D alpha
Probab=99.19 E-value=2.2e-10 Score=123.01 Aligned_cols=115 Identities=17% Similarity=0.382 Sum_probs=97.2
Q ss_pred ceEEEEEEEeeecCCC---------------------CCCCCcEEEEEECCeEE-EeeeecCC-CCCcccceEEEEecCC
Q 009307 417 GGLLVVIVHEAQDVEG---------------------KHHTNPYARILFRGEER-KTKHVKKN-RDPRWEEEFQFMLEEP 473 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~v~~~t-~nP~w~e~f~f~v~~~ 473 (538)
-|.|.++|++|++|+. ++.+||||.|.+++.+. +|+++.+. .||.|+|+|.+.|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 5778888888888763 13579999999998776 99999884 6999999999999874
Q ss_pred CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC------CcEEEEEEEEEeC
Q 009307 474 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK------NGRIQIELQWRTA 538 (538)
Q Consensus 474 ~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~------~G~I~l~~~w~p~ 538 (538)
...+.+.|.|.+- + ..++||.+.|+..+++.+..+++||++.+.. ..+|+++++|+|+
T Consensus 87 --~~~v~f~vkd~~~----~-g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDNP----I-GATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCCc----c-CceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4689999998873 3 4569999999999999998999999997642 4699999999985
No 204
>PLN02270 phospholipase D alpha
Probab=99.18 E-value=2.4e-10 Score=122.69 Aligned_cols=129 Identities=18% Similarity=0.329 Sum_probs=104.6
Q ss_pred CeeEEEEEEEeecCCccCC------------------CCCCCCcEEEEEEcCccCCeeeeeecCCC-CCCeEecEEEEEe
Q 009307 258 PVGILHVKVVKAMNLKKKD------------------LLGASDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTV 318 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~w~e~f~f~v 318 (538)
.-|.|.|+|.+|++|++.+ ..+.+||||.+.+++.+. .||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence 3599999999999998631 125679999999998765 799999885 6999999999999
Q ss_pred eCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCC
Q 009307 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 394 (538)
Q Consensus 319 ~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
... ...+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++.... .+..+....|+++++|.|...+
T Consensus 84 ah~-~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 84 AHM-ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ccC-cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 876 5789999999998765 59999999999999998888899885431 1112233499999999997665
No 205
>PLN02223 phosphoinositide phospholipase C
Probab=99.16 E-value=1.9e-10 Score=118.69 Aligned_cols=98 Identities=30% Similarity=0.447 Sum_probs=82.5
Q ss_pred eeEEEEEEEeecCCcc-----CCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE
Q 009307 259 VGILHVKVVKAMNLKK-----KDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (538)
...|.|+|+.|++++. .+.....||||+|.+.|-. ...++|++..|+.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4689999999998751 1223467999999997632 23457888889999999999999999888788999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCC
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEE 356 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
|+|..++|+|+|++.+|+..|..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998889999999999999999885
No 206
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.9e-11 Score=120.70 Aligned_cols=117 Identities=22% Similarity=0.424 Sum_probs=96.4
Q ss_pred CCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009307 411 ENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 487 (538)
Q Consensus 411 ~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
++...-++.++++|..|++|..+ |.+||||.+.++..+++|+++....||+|||.|.|.+++. .+.|++.|||++
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded 365 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDED 365 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCc
Confidence 44455678899999999999653 7899999999999999999999999999999999999984 468999999987
Q ss_pred cCccCC----------CCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEE
Q 009307 488 SRIGLL----------HPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQ 534 (538)
Q Consensus 488 ~~~g~~----------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~ 534 (538)
.+ + ..|++||+..|.+..+- +.++-||+|.... +|-|++.+.
T Consensus 366 ~d---lksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 366 ND---LKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred cc---HHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence 53 2 35899999999987763 4668899997531 677776553
No 207
>PLN02952 phosphoinositide phospholipase C
Probab=99.08 E-value=1.5e-09 Score=114.52 Aligned_cols=104 Identities=29% Similarity=0.424 Sum_probs=84.4
Q ss_pred eeEEEEEEEeecCCccC------CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEE
Q 009307 259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (538)
...|.|+|+.|.+++.. +.....||||+|.+-+-. ..+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 112345999999986532 2346899999999999999999999988777899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecc
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||+|..+.++++|++.+|+..|..+.. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988899999999999999998853 55553
No 208
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=1.7e-09 Score=88.30 Aligned_cols=97 Identities=33% Similarity=0.542 Sum_probs=81.3
Q ss_pred EEEEEEeeecCCC---CCCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009307 420 LVVIVHEAQDVEG---KHHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|.|++|+++.. ....+|||.+.+.+ ...+|+++.++.||.|++.|.|.+... ....+.++|++.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence 4688999999975 35799999999998 778999999999999999999999863 34689999999875 345
Q ss_pred CceeEEEEEechhhc-ccceeceEEEe
Q 009307 496 KETLGYIDINLSDVV-SNKRINEKYHL 521 (538)
Q Consensus 496 d~~lG~~~i~l~~l~-~~~~~~~~~~L 521 (538)
+.++|++.+++.++. .......|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceecC
Confidence 789999999999998 55555677764
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.06 E-value=8.3e-10 Score=94.56 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=75.2
Q ss_pred EEEEEEeeecCCC-----CC--CCCcEEEEEECC---eEEEeeeecCCCC--CcccceEEEEecCCCC------------
Q 009307 420 LVVIVHEAQDVEG-----KH--HTNPYARILFRG---EERKTKHVKKNRD--PRWEEEFQFMLEEPPT------------ 475 (538)
Q Consensus 420 L~v~v~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~v~~~t~n--P~w~e~f~f~v~~~~~------------ 475 (538)
|+|.|.+|++++. .+ .+||||++.+.+ ++++|.+.+++.| |.||+.|.|++..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 499999999976 3569999999999 9999999998876322
Q ss_pred ----------CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccc
Q 009307 476 ----------NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK 513 (538)
Q Consensus 476 ----------~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~ 513 (538)
...|.++|||++. ++.|++||.++++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence 2479999999986 788999999999999987754
No 210
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.06 E-value=7.8e-11 Score=125.82 Aligned_cols=85 Identities=22% Similarity=0.360 Sum_probs=74.2
Q ss_pred EEEEEEEeeecCCC---CCCCCcEEEEEECCeEE--EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 419 LLVVIVHEAQDVEG---KHHTNPYARILFRGEER--KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~--kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.++|++.+|.+|.. ++..|||+++.++++.. +...+.+|.||+|++.|++.+..+ ....+.++|||++. +
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~----~ 688 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL----E 688 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec----c
Confidence 46799999999965 46899999999998874 778899999999999999998875 66689999999986 6
Q ss_pred CCCceeEEEEEechh
Q 009307 494 HPKETLGYIDINLSD 508 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~ 508 (538)
++|+.+|+.+++|++
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 789999999999975
No 211
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=2.5e-09 Score=87.51 Aligned_cols=89 Identities=29% Similarity=0.562 Sum_probs=76.4
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 420 LVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
+.+.|++|++|... +..+|||++++.+. ..+|+.+.++.||.|||.|.|.+.... ...|.++||+++. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC----c
Confidence 67899999999764 36899999999875 689999999999999999999998753 6789999999975 3
Q ss_pred CCCceeEEEEEechhhcccc
Q 009307 494 HPKETLGYIDINLSDVVSNK 513 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~~ 513 (538)
+.+..+|.+.+++.++..+.
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 46899999999999987654
No 212
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.01 E-value=1.7e-10 Score=119.04 Aligned_cols=134 Identities=27% Similarity=0.507 Sum_probs=104.6
Q ss_pred ccCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc-------------------------C---CeeeeeecCC
Q 009307 253 KAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-------------------------L---PSKKTTVKHK 304 (538)
Q Consensus 253 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-------------------------~---~~~~T~v~~~ 304 (538)
+..+.|.-.+.|.+.+|+||.++|.+|.+|||+...+.+.. . -.+-|++++.
T Consensus 107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~ 186 (1103)
T KOG1328|consen 107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK 186 (1103)
T ss_pred cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence 34556777788999999999999999999999998873210 0 0135889999
Q ss_pred CCCCeEecEEEEEeeCCCCCEEEEEEEeccCC---------------------------------C---CCcccEEEEEe
Q 009307 305 NLNPEWNEEYNFTVRDPESQAVELAVYDWEQV---------------------------------G---KHDKMGMNVVP 348 (538)
Q Consensus 305 t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~---~d~~lG~~~i~ 348 (538)
|+||+|+|.|.|.+.+..++.+.+.+||+|+- + .|||+|++.+|
T Consensus 187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 99999999999999999899999999999732 1 38999999999
Q ss_pred CccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307 349 LKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392 (538)
Q Consensus 349 l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
+.++... +.+.|+.|.... ..++..|.+++.+......
T Consensus 267 l~EiP~~-Gld~WFkLepRS-----~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 267 LAEIPPD-GLDQWFKLEPRS-----DKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred hhcCCcc-hHHHHhccCccc-----ccccccceEEEEEEEeeec
Confidence 9999875 344555553322 2367899999999776543
No 213
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.97 E-value=2.3e-09 Score=112.90 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=82.3
Q ss_pred eeEEEEEEEeecCCccC------CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEE
Q 009307 259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (538)
..+|.|+|+.+.+++.. +.....||||+|.+-+-. ...++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 222356999999996522 2245889999999999999999999988888999999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCC
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEP 357 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~ 357 (538)
+|+|...+|+|+|+..+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998754
No 214
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.95 E-value=2.5e-09 Score=110.75 Aligned_cols=112 Identities=22% Similarity=0.300 Sum_probs=97.9
Q ss_pred EEEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
-|.|.|.+|+||+.. |..||||.|.+..+. .+|.++.+++.|.|.|.|.|.++.. -..+.+-|||++ ++
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~--F~~l~fYv~D~d-----~~ 78 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT--FRYLSFYVWDRD-----LK 78 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc--eeeEEEEEeccc-----cc
Confidence 478999999999874 578999999998765 5999999999999999999999763 358999999998 67
Q ss_pred CCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEEe
Q 009307 495 PKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT 537 (538)
Q Consensus 495 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~p 537 (538)
+|+.||.+.|.=.++......+.||.|.... +|+|++++++.+
T Consensus 79 ~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred cccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 9999999999999998877788999997532 799999998865
No 215
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.91 E-value=7.4e-09 Score=109.11 Aligned_cols=98 Identities=29% Similarity=0.469 Sum_probs=82.2
Q ss_pred EEEEEEEeecCCccCCC----CCCCCcEEEEEEcCcc--CCeeeee-ecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307 261 ILHVKVVKAMNLKKKDL----LGASDPYVKLKITEDK--LPSKKTT-VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~----~g~~dpyv~v~~~~~~--~~~~~T~-v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (538)
+|.|+|+++.++...-. ...+||||.|.+-|-. ....+|+ +..|+-||.|+|+|+|.+..++-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997765321 2457999999986533 1245888 667899999999999999999888999999999
Q ss_pred cCCCCCcccEEEEEeCccCCCCCCe
Q 009307 334 EQVGKHDKMGMNVVPLKELTPEEPS 358 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~ 358 (538)
|..++|+|+|+.++|+..|..+-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999988543
No 216
>PLN02228 Phosphoinositide phospholipase C
Probab=98.91 E-value=1.6e-08 Score=106.32 Aligned_cols=123 Identities=25% Similarity=0.365 Sum_probs=93.2
Q ss_pred eEEEEEEEeecCCcc---C---CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeE-ecEEEEEeeCCCCCEEEEEE
Q 009307 260 GILHVKVVKAMNLKK---K---DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELAV 330 (538)
Q Consensus 260 g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~v 330 (538)
..|+|+|++|++|+. . +.....||||+|.+.+-. ...++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 112347999999986532 23468999999999999 99999999988778899999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCc-cccEEEEEEEEEec
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK-SRGQLVVEFIYKPF 391 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~G~l~l~l~~~p~ 391 (538)
+|+|..+.|+++|++.+|+..|..+-. .++|... .+.. ...+|.+++.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~------~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR------AGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC------CCCCCCCeEEEEEEEEcCc
Confidence 999988899999999999999987743 2333221 1122 34578888888754
No 217
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.90 E-value=7.2e-09 Score=109.11 Aligned_cols=99 Identities=24% Similarity=0.343 Sum_probs=81.3
Q ss_pred eeEEEEEEEeecCCc----cC--CCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEE
Q 009307 259 VGILHVKVVKAMNLK----KK--DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (538)
...|.|+|+.+.+++ .. +.....||||+|.+.+-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 122456999999996432 2346899999999999999999999888778999999
Q ss_pred EeccCCCCCcccEEEEEeCccCCCCCC
Q 009307 331 YDWEQVGKHDKMGMNVVPLKELTPEEP 357 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~ 357 (538)
+|+|..+.|+++|++.+|+..|..+-.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998743
No 218
>PLN02223 phosphoinositide phospholipase C
Probab=98.89 E-value=2.9e-08 Score=102.77 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=87.9
Q ss_pred CceEEEEEEEeeecCCC--------CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307 416 GGGLLVVIVHEAQDVEG--------KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--------~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 482 (538)
....|.|+|+.|++++. ...+||||+|.+.| ..++|.+..++.||+|||.|+|.+..+ .-..|.|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence 35679999999998741 12579999999966 245777777899999999999999876 44579999
Q ss_pred EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w 535 (538)
|+|++. .+.++++|+..+|+..+..+- +..+|.+.. .-++.++++|
T Consensus 486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEV----STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCC----CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999985 457899999999999997654 567786542 4567777766
No 219
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.89 E-value=4.6e-09 Score=84.27 Aligned_cols=86 Identities=21% Similarity=0.422 Sum_probs=70.5
Q ss_pred EEEEEEeecCCccCC---CCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCC
Q 009307 262 LHVKVVKAMNLKKKD---LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (538)
Q Consensus 262 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (538)
|.|+|.+|+|+.-.+ ..+.+||||.+++++.. +.||++ +.||.|||+|.|.+.. ...+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCC-Ce
Confidence 679999999998777 56889999999999764 257765 5899999999999953 6899999999853 45
Q ss_pred CcccEEEEEeCccCCCC
Q 009307 339 HDKMGMNVVPLKELTPE 355 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~ 355 (538)
.-.+|..-+.++++...
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 55789988888887653
No 220
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.81 E-value=6.4e-08 Score=99.29 Aligned_cols=179 Identities=20% Similarity=0.324 Sum_probs=128.2
Q ss_pred eeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccC----CCCCcccEEEEEeCccCCCCCCeEEEEecccccccC
Q 009307 296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371 (538)
Q Consensus 296 ~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~ 371 (538)
..+|.++.+.+||.|.+.|.+.......|.++++++|-+. ...++|+|++...+..+.........+.+ .+
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~----~~- 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL----KP- 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc----cc-
Confidence 3589999999999999999888877778999999999774 35678999999999988765432222211 11
Q ss_pred CCCCCccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCCCC---CCCCcEEEEEEC--C
Q 009307 372 DGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G 446 (538)
Q Consensus 372 ~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~ 446 (538)
......|+|.+.+.-... .........+|++|..+ +++|||..++-. .
T Consensus 117 --~~~~~~g~iti~aee~~~-------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d 169 (529)
T KOG1327|consen 117 --GKNAGSGTITISAEEDES-------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDD 169 (529)
T ss_pred --CccCCcccEEEEeecccc-------------------------cCceeeeeeeeeecCcccccccCCcceEEEEecCC
Confidence 123456777777633210 11222334568888765 579999999864 2
Q ss_pred -e---EEEeeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307 447 -E---ERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 511 (538)
Q Consensus 447 -~---~~kT~v~~~t~nP~w~e~f~f~v~~~~~---~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~ 511 (538)
. .++|.+++.+.+|.|.+ |.......+. +..+.++++|++.+ ++++++|.+..++.++..
T Consensus 170 ~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 170 GSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHhcc
Confidence 2 24999999999999998 5555443322 35788999999864 567999999999999864
No 221
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.79 E-value=3.2e-09 Score=109.83 Aligned_cols=101 Identities=26% Similarity=0.436 Sum_probs=87.6
Q ss_pred cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecCCCCCCeEecEEEEEeeCCC----CCE
Q 009307 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQA 325 (538)
Q Consensus 254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~ 325 (538)
.+......|.|.|+.|+++.+-|.+|-+||||++.+.+.. ....+|+|+..|+||+|+|+|+|.|.... ...
T Consensus 941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen 941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence 3455667899999999999999999999999999998754 24569999999999999999999997432 457
Q ss_pred EEEEEEeccCCCCCcccEEEEEeCccCCC
Q 009307 326 VELAVYDWEQVGKHDKMGMNVVPLKELTP 354 (538)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 354 (538)
+.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus 1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEEeeccceecccccchHHHHhhCCCCC
Confidence 99999999999999999999999888763
No 222
>PLN02952 phosphoinositide phospholipase C
Probab=98.76 E-value=1.2e-07 Score=100.33 Aligned_cols=111 Identities=24% Similarity=0.314 Sum_probs=86.7
Q ss_pred ceEEEEEEEeeecCCC--C-------CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307 417 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|.|+.|++++. . ...||||+|.+-| .+++|+++.++.||+|||.|+|.+..+ .-..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~P-ELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVP-ELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcC-CccEEEEE
Confidence 4689999999988742 1 1358999999965 356999999999999999999999875 34579999
Q ss_pred EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w 535 (538)
|+|++. .+.++++|+..++++.+..+- +|.+|.+.. .-.+.|++.|
T Consensus 548 V~D~D~----~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 548 VREYDM----SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEecCC----CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 999875 457899999999999998765 588997542 3444555544
No 223
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.74 E-value=3.7e-08 Score=103.17 Aligned_cols=127 Identities=24% Similarity=0.399 Sum_probs=96.1
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccC---CeeeeeecCCCCCCeEe-cEEEEEeeCCCCCEEEEEEEeccC
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL---PSKKTTVKHKNLNPEWN-EEYNFTVRDPESQAVELAVYDWEQ 335 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~v~~~t~nP~w~-e~f~f~v~~~~~~~L~i~v~d~~~ 335 (538)
-.|.|.|+.||+|+... .|...|||.|.+-|... ..++|.|+.|++||+|| |+|+|.+.+++-..|++.|||.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999543 36678999999876432 23466777899999999 999999999998999999999999
Q ss_pred CCCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCC
Q 009307 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEED 395 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~ 395 (538)
++...|||++.+|+..+..+-. ..+|...- + ..-....|.+.+...|..+.+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y----S-EdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY----S-EDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc----h-hhhhhhhheeeeEeccccCcc
Confidence 9888899999999999987632 22221110 0 112345677888888876543
No 224
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.71 E-value=3.4e-08 Score=99.82 Aligned_cols=120 Identities=26% Similarity=0.424 Sum_probs=97.1
Q ss_pred eEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEe-cEEEEEeeCC--CCCEEEEEEEeccC
Q 009307 260 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVRDP--ESQAVELAVYDWEQ 335 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~-e~f~f~v~~~--~~~~L~i~v~d~~~ 335 (538)
|.|.|+|..||+|+-+|.. ...|.||.++++... ++|.+..+++||.|| +.|.|.+.+. .+..|.+.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7789999999999999864 467999999999766 499999999999999 7799998764 36789999999999
Q ss_pred CCCCcccEEEEEeCccCCCCCC----------eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 336 VGKHDKMGMNVVPLKELTPEEP----------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~----------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
.+.+|-||++.|+++.|...+. ...|+++.... ...+|+|.+-+...
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkvd 136 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKVD 136 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEEe
Confidence 9999999999999998864321 23577765422 45688888766543
No 225
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.64 E-value=4.6e-07 Score=95.69 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=86.2
Q ss_pred ceEEEEEEEeeecCC----CC-----CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307 417 GGLLVVIVHEAQDVE----GK-----HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~----~~-----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|+|+.|++++ .. ...||||+|.+.| .+++|+++.++.||+|||.|+|.+..+ .-..+.+.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEEE
Confidence 467999999998742 11 2579999999964 346999999999999999999998875 34689999
Q ss_pred EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w 535 (538)
|+|++. .+.++++|+..++++.|..+- +..+|.+.. ...+.+.++|
T Consensus 530 V~d~D~----~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDM----SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCC----CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 999875 457899999999999997654 456776543 3566666665
No 226
>PLN02352 phospholipase D epsilon
Probab=98.62 E-value=2.5e-07 Score=99.62 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=92.9
Q ss_pred CCeeEEEEEEEeecCCccC----CCC-CCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE
Q 009307 257 RPVGILHVKVVKAMNLKKK----DLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (538)
Q Consensus 257 ~~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (538)
..-|.|.++|.+|+-+... +.. ...||||++.+++.+. .|| .+..||.|+|+|.+.+.......+.|.|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3469999999999843321 111 1239999999998764 577 66679999999999998764468999998
Q ss_pred eccCCCCCcccEEEEEeCccCCCCCC-eEEEEecccccccCCCCCCccc-cEEEEEEEEEeccCC
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSR-GQLVVEFIYKPFKEE 394 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 394 (538)
| ...+||.+.+|..++..++. .+.|+++.... ++... ..|+++++|.|...+
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence 7 25799999999999998865 78899885421 12223 599999999998765
No 227
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.62 E-value=4.1e-07 Score=96.23 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=86.9
Q ss_pred ceEEEEEEEeeecCCC--C-------CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009307 417 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|+|+.+++++. . ...||||+|.+-| ..++|++..++.||+|||.|+|.+..+ .-..+.|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEEEE
Confidence 4679999999998641 1 2479999999965 235888888999999999999999875 44689999
Q ss_pred EEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEE
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w 535 (538)
|+|++. ..+++++|+..+++..|..+- +..+|.+.. .-++.++++|
T Consensus 547 V~d~d~----~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDI----NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCC----CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999885 357899999999999997654 456776543 3566677665
No 228
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.62 E-value=2.1e-07 Score=74.88 Aligned_cols=82 Identities=26% Similarity=0.477 Sum_probs=67.8
Q ss_pred EEEEEEeeecCCC------CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009307 420 LVVIVHEAQDVEG------KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (538)
Q Consensus 420 L~v~v~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
|.|+|+.|+|+.. .+.++|||.+.+++. +.+|++ +.||.|||.|.|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999964 257899999999987 558887 4899999999999953 3589999999864
Q ss_pred CCCCceeEEEEEechhhccc
Q 009307 493 LHPKETLGYIDINLSDVVSN 512 (538)
Q Consensus 493 ~~~d~~lG~~~i~l~~l~~~ 512 (538)
...-.+|-.-+.++++.+.
T Consensus 71 -~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred -CeecceeeehhhHHHHHHH
Confidence 2456899999999999864
No 229
>PLN02352 phospholipase D epsilon
Probab=98.62 E-value=3.4e-07 Score=98.59 Aligned_cols=110 Identities=21% Similarity=0.334 Sum_probs=86.2
Q ss_pred CceEEEEEEEeeecCCCC--------CCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307 416 GGGLLVVIVHEAQDVEGK--------HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~--------~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
--|.|.++|.+|+.+... ...+|||.+.+++.+. +| .+..||.|+|+|.+.|... .+..+.+.|.|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~ 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC
Confidence 356777777777633110 1239999999998765 77 5667999999999999875 335799999873
Q ss_pred ccCccCCCCCceeEEEEEechhhcccce-eceEEEeCCCC----C-cEEEEEEEEEeC
Q 009307 487 SSRIGLLHPKETLGYIDINLSDVVSNKR-INEKYHLIDSK----N-GRIQIELQWRTA 538 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~----~-G~I~l~~~w~p~ 538 (538)
-++||.+.++..+++.+.. +++||++.+.. . .+|+++++|+|+
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 3799999999999999865 99999997642 3 599999999985
No 230
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.53 E-value=1.5e-07 Score=102.51 Aligned_cols=117 Identities=26% Similarity=0.365 Sum_probs=95.0
Q ss_pred CccccEEEEEEEEEeccCCCCCCccccccccccCCCCCCCCceEEEEEEEeeecCC---CCCCCCcEEEEEECCe-----
Q 009307 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVE---GKHHTNPYARILFRGE----- 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~---~~~~~dpyv~v~~~~~----- 447 (538)
++..|++.++++|. .|.|.|.|.-|++|+ ....+||||+.++...
T Consensus 1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence 55677999999996 678999999999984 3457999999999642
Q ss_pred EEEeeeecCCCCCcccceEEEEe-cCCC-CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307 448 ERKTKHVKKNRDPRWEEEFQFML-EEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 523 (538)
Q Consensus 448 ~~kT~v~~~t~nP~w~e~f~f~v-~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 523 (538)
++||+++++|.||.|||...+.- .... .+..|.+.||..+. +..+.++|.+.|+|.++...++..+||+|..
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 46999999999999999987762 2111 23579999998874 5678899999999999987776679999964
No 231
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.51 E-value=3.9e-07 Score=92.33 Aligned_cols=114 Identities=18% Similarity=0.397 Sum_probs=94.2
Q ss_pred ceEEEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCcccc-eEEEEecCCCC-CCeEEEEEEEcccCc
Q 009307 417 GGLLVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRWEE-EFQFMLEEPPT-NDRLHVEVCSVSSRI 490 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e-~f~f~v~~~~~-~~~l~v~V~d~~~~~ 490 (538)
.|.+-|.|..||+||.. ...|.||++.+++..+||.+..++.||.||. -|.|.+.+.+. ++.+.|.+.|++.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 47788999999999874 4678999999999999999999999999995 59999987544 4589999999997
Q ss_pred cCCCCCceeEEEEEechhhccc----------ceeceEEEeCCC---CCcEEEEEEE
Q 009307 491 GLLHPKETLGYIDINLSDVVSN----------KRINEKYHLIDS---KNGRIQIELQ 534 (538)
Q Consensus 491 g~~~~d~~lG~~~i~l~~l~~~----------~~~~~~~~L~~~---~~G~I~l~~~ 534 (538)
.+.++.||.+.|+++.+.-. .-+..||++-+. -+|+|.+-+.
T Consensus 80 --ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 80 --YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred --cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 46789999999999987631 246789998775 2688876543
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.49 E-value=1.9e-06 Score=90.92 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=87.6
Q ss_pred ceEEEEEEEeeecCCC----C-----CCCCcEEEEEECC-----eEEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEE
Q 009307 417 GGLLVVIVHEAQDVEG----K-----HHTNPYARILFRG-----EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHV 481 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~----~-----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~~l~v 481 (538)
...|+|+|++|++|+. . ...||||+|.+.| ..++|+++.++.||.| ||.|+|.+..+ .-..+.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~p-ELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVP-ELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcC-ceeEEEE
Confidence 4579999999998731 1 2479999999854 2458999988899999 99999999875 3458999
Q ss_pred EEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEEe
Q 009307 482 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT 537 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~p 537 (538)
.|+|++. .+.++++|+..++++.|..+- +..+|.+.. ..++.+.+.+.|
T Consensus 509 ~V~D~d~----~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYDN----DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCCC----CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999875 457899999999999996644 466776543 466777777654
No 233
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.43 E-value=2.5e-06 Score=90.43 Aligned_cols=111 Identities=19% Similarity=0.313 Sum_probs=86.7
Q ss_pred EEEEEEEeeecCCCC-------CCCCcEEEEEECCe-----EEEee-eecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009307 419 LLVVIVHEAQDVEGK-------HHTNPYARILFRGE-----ERKTK-HVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 485 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~-v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d 485 (538)
.|.|.|+++++++.. ..+||||.|.+.|- ..+|+ +..++-||.|+|.|+|.+..+ .-.-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEEEe
Confidence 899999999966431 35899999999763 34898 455799999999999999986 34589999999
Q ss_pred cccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC-----CcEEEEEEEEEe
Q 009307 486 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT 537 (538)
Q Consensus 486 ~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~I~l~~~w~p 537 (538)
++. .++|+++|+..+|++.|..+- +-.+|.+.. .-.+-+.+.|.+
T Consensus 696 ~d~----~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 696 YDY----IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cCC----CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence 986 467999999999999997654 355665531 466777777653
No 234
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.27 E-value=6.8e-06 Score=86.71 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=78.9
Q ss_pred ceEEEEEEEeeecCCCC--CCCCcEEEEEECCe------EEEeeeecCCCCCccc-ceEEEEecCCCCCCeEEEEEEEcc
Q 009307 417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRGE------ERKTKHVKKNRDPRWE-EEFQFMLEEPPTNDRLHVEVCSVS 487 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~------~~kT~v~~~t~nP~w~-e~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
.-.|.|.|+.||.|+.. +...|||+|.+-|. .++|.++.++.||+|| |.|+|.+.++ .-..|.+.|++.+
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEeccc
Confidence 35688999999999875 35679999999652 3355677789999999 9999999997 4468999999998
Q ss_pred cCccCCCCCceeEEEEEechhhcccceeceEEEeCC
Q 009307 488 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 523 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 523 (538)
. ++...+||++..|+..+..+- +..+|.+
T Consensus 1143 m----fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1143 M----FSDPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred c----cCCcceeeeeecchhhhhccc---eeeeccc
Confidence 4 788889999999999886542 3455544
No 235
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.25 E-value=2.6e-06 Score=70.63 Aligned_cols=102 Identities=22% Similarity=0.310 Sum_probs=75.7
Q ss_pred EEEEEEeeecCCCC----------------CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEecCC------
Q 009307 420 LVVIVHEAQDVEGK----------------HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEP------ 473 (538)
Q Consensus 420 L~v~v~~a~~L~~~----------------~~~dpyv~v~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~------ 473 (538)
|.|.|++|.+|... =..|+||++.+. ++.++|+++.++-.|.|+..++|++.-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 35677787777421 136899999963 4667999999999999999999998711
Q ss_pred --------CCCCeEEEEEEEcccCccC------CCCCceeEEEEEechhhccc-ceeceEEEe
Q 009307 474 --------PTNDRLHVEVCSVSSRIGL------LHPKETLGYIDINLSDVVSN-KRINEKYHL 521 (538)
Q Consensus 474 --------~~~~~l~v~V~d~~~~~g~------~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 521 (538)
-....+.++||.+.....- -.+|-.||.+.||+.+|+.. ..+..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1134799999987643110 12466899999999999985 578899975
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.25 E-value=7.7e-07 Score=97.08 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=87.5
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEE---eeCCCCCEEEEEEEec
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT---VRDPESQAVELAVYDW 333 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~---v~~~~~~~L~i~v~d~ 333 (538)
.|+|.|-|..|++|+--.....+||||+.++.+.. ..++||+++++|.||+|||...+. ......+.|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 68999999999999654445678999999997643 345799999999999999988765 2223367899999999
Q ss_pred cCCCCCcccEEEEEeCccCCCCCCeEEEEec
Q 009307 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+....+.++|.+.++|.++...+....|+.+
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9999999999999999999877766667765
No 237
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=98.24 E-value=5.1e-06 Score=86.01 Aligned_cols=225 Identities=17% Similarity=0.268 Sum_probs=158.2
Q ss_pred CCCCceeCCCC-------cchHHHHHHHHhhch------hHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEeeCCCCC
Q 009307 58 EIPLWVKCPDY-------DRVDWLNKFLELMWP------YLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124 (538)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~W~------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~ 124 (538)
+.|.|...... -.|..+|.++...+. ..+.++.+.....++.++....-+-.++.+++.++-||.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 58888766322 356677888888876 34456666666667777766443334899999999999999
Q ss_pred CeEeeeEEEecC------------C-------------CeEEEEeeeeEeCCCCeEEEEEE-eceeeEEEEEeEEEEEEE
Q 009307 125 PTFQGMKVYVTD------------E-------------KELIMEPCLKWAANPNVTIGVKA-FGLKATVQVVDLQVFAQP 178 (538)
Q Consensus 125 P~i~~v~~~~~~------------~-------------~~~~l~~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~ 178 (538)
|.+++.+++.-+ + ..+.+-.++.|.|+..-++++.. .+.+..+.|+-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998610 0 12345668899998888887765 344555666678999999
Q ss_pred EEEEecCCCCCCeeEEEEEEcCCCCeEEEEEEE--ccccccccchHHHHHHHHHHHHHhhhcccCcccc-------cccc
Q 009307 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKL--VGADLMSIPGLYRFVQELIKTQVANMYLWPKTLE-------VPIL 249 (538)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~--~g~~~~~~P~l~~~i~~~i~~~l~~~~v~P~~~~-------~pi~ 249 (538)
|+.+. ..|+ .+|+++|+..|.++-+++. .|..+.+ .+...|...++..+.+.+.||++-- .|+.
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99997 5677 8999999999988666553 2222211 2345677777788888899998422 2222
Q ss_pred CCCc-----cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcC
Q 009307 250 DPSK-----AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE 291 (538)
Q Consensus 250 ~~~~-----~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 291 (538)
.... ..-.+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 1111 1235679999999999988754 47788999998864
No 238
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=3.7e-06 Score=80.47 Aligned_cols=96 Identities=31% Similarity=0.453 Sum_probs=79.9
Q ss_pred cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc--CCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEE
Q 009307 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (538)
Q Consensus 254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (538)
.++.....|.|++++|.+|..+|.+|.+||||..++.+.. .-+++|.+.+++.||.||+.|.|.+... ....+.|.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4556678899999999999999999999999999987543 2246899999999999999999988643 36789999
Q ss_pred EEeccCCCCCcccEEEEEeC
Q 009307 330 VYDWEQVGKHDKMGMNVVPL 349 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l 349 (538)
|||++..+..+++|-+...+
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999887888888765443
No 239
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.05 E-value=3.3e-06 Score=64.92 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=68.2
Q ss_pred EEEEEeecCCccCCCCC-CCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCCCCC
Q 009307 263 HVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKH 339 (538)
Q Consensus 263 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d 339 (538)
-++++.|++|.-....| .+.-|++--+.-.+....+|++.++..||+|+|+|.|.+... .+-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 57899999997654333 344566655443333346899999999999999999987643 35678889988 56788
Q ss_pred cccEEEEEeCccCCCC
Q 009307 340 DKMGMNVVPLKELTPE 355 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~ 355 (538)
+.||.|++.++++-.+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999998755
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.91 E-value=0.0028 Score=63.18 Aligned_cols=231 Identities=16% Similarity=0.295 Sum_probs=152.0
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeC-------CCCCEEEEEEEecc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-------PESQAVELAVYDWE 334 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~v~d~~ 334 (538)
+.|+|++++|.+... ...-.+..++++... .|..+..+..|.||.+....+.. .....|++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998762 346678888888765 77788899999999998888752 23678999999988
Q ss_pred -CCCCCcccEEEEEeCccC---CCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEeccCCCCCCc--c---c--
Q 009307 335 -QVGKHDKMGMNVVPLKEL---TPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKS--F---E-- 401 (538)
Q Consensus 335 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~--~---~-- 401 (538)
..++.+.+|.+.++|... ..+ .....|++|..... +-.+.+-+|.+.+............. . .
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 557778999999999998 544 34567777754321 11234557777777665443210000 0 0
Q ss_pred -ccc----c---ccc----------------CCCCCCCCceEEEEEEEeeecCCCC---------CCCCcEEEEEECCeE
Q 009307 402 -ESQ----T---VQK----------------APENTPAGGGLLVVIVHEAQDVEGK---------HHTNPYARILFRGEE 448 (538)
Q Consensus 402 -~~~----~---~~~----------------~~~~~~~~~g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~ 448 (538)
..+ . ... .+.+.....-+|.|++..|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 000 0 000 0111112345678888899887532 124457777777888
Q ss_pred EEeeeecCCCCCccc-ceEE-EEecCC--------CCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307 449 RKTKHVKKNRDPRWE-EEFQ-FMLEEP--------PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 511 (538)
Q Consensus 449 ~kT~v~~~t~nP~w~-e~f~-f~v~~~--------~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~ 511 (538)
..|.......+|.|. |.-. +.+... .....|.|.++.. +..||.+.+++..++.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccC
Confidence 888888888899875 3333 555532 1224677777754 4789999999999974
No 241
>PLN02964 phosphatidylserine decarboxylase
Probab=97.78 E-value=3e-05 Score=83.30 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCCCeeEEEEEEEeecCCccCCCCCCCCcEEEE-EEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKL-KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (538)
Q Consensus 255 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v-~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (538)
.+.-.|+..+++++|+ ++. .|||..+ ++|.+. +||.+.++|.||+|||...|.+...+....++.|||.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred cccccCeEEEEeehhh----hcc---CCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence 4556899999999997 332 4886554 555443 6999999999999999999999877767789999999
Q ss_pred cCCCCCcccEEEEEeCccCCCC
Q 009307 334 EQVGKHDKMGMNVVPLKELTPE 355 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+++++++++|.|++++.++...
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCCHHHhhhheeecHhhccHH
Confidence 9999999999999988776644
No 242
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.76 E-value=4.2e-05 Score=78.97 Aligned_cols=88 Identities=28% Similarity=0.544 Sum_probs=70.9
Q ss_pred EEeecCCccCCCCCCCCcEEEEEEc---CccCCeeeeeecCCCCCCeEecEEEEEeeCCC----CCEEEEEEEeccCCCC
Q 009307 266 VVKAMNLKKKDLLGASDPYVKLKIT---EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVGK 338 (538)
Q Consensus 266 v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~~~ 338 (538)
.++|++|.++|..+++|||..++-. +.....++|.+.++++||.|.+ |.+...... ...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999998753 2223457999999999999995 444443222 5678999999999999
Q ss_pred CcccEEEEEeCccCCC
Q 009307 339 HDKMGMNVVPLKELTP 354 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~ 354 (538)
++++|++..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999999875
No 243
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.66 E-value=5.9e-05 Score=74.30 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=93.6
Q ss_pred CceEEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEEeeeecCCCCCcccceEEEEecCCCC----------CC
Q 009307 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERKTKHVKKNRDPRWEEEFQFMLEEPPT----------ND 477 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~----------~~ 477 (538)
....|.+.|.++++++.. ...|.|+++.+- .++.+|.+++.+.+|.|+|.|...+...+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888888887642 356789998873 234589999999999999999999976221 12
Q ss_pred eEEEEEEEcccCccCCCCCceeEEEEEechhhcccceeceEEEeCCCC---CcEEEEEEEEE
Q 009307 478 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWR 536 (538)
Q Consensus 478 ~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~---~G~I~l~~~w~ 536 (538)
-++++++.+. |++++|.++|.+++.|.-|.....+...++|.+.. +|++.+++..|
T Consensus 445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeecc---ccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 4889999876 45789999999999999998888899999999864 69999888765
No 244
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.57 E-value=6.8e-05 Score=57.79 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=66.2
Q ss_pred EEEEeeecCCC--C--CCCCcEEEEEEC--C-eEEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEcccCccCC
Q 009307 422 VIVHEAQDVEG--K--HHTNPYARILFR--G-EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGLL 493 (538)
Q Consensus 422 v~v~~a~~L~~--~--~~~dpyv~v~~~--~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~-~l~v~V~d~~~~~g~~ 493 (538)
+++.+|++|.- . .++.-|++-.+. . -..||...++..||.|.|+|.|.+......+ .|.+.|+.. +
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------~ 76 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------T 76 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------C
Confidence 67889998842 2 244457766553 2 2349999999999999999999887643433 788999874 4
Q ss_pred CCCceeEEEEEechhhcccceeceEE
Q 009307 494 HPKETLGYIDINLSDVVSNKRINEKY 519 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l~~~~~~~~~~ 519 (538)
.+++.||.+.++|+++-.. ...+|.
T Consensus 77 ~RKe~iG~~sL~l~s~gee-E~~HW~ 101 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQ-ETDHWL 101 (103)
T ss_pred CccceeeEEEeecccCCHH-Hhhhhh
Confidence 6789999999999987543 234554
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.45 E-value=0.00012 Score=60.95 Aligned_cols=101 Identities=19% Similarity=0.301 Sum_probs=71.2
Q ss_pred EEEEEEeecCCccCCC---------C----CCCCcEEEEEEcC-ccCCeeeeeecCCCCCCeEecEEEEEee--------
Q 009307 262 LHVKVVKAMNLKKKDL---------L----GASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVR-------- 319 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~---------~----g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~w~e~f~f~v~-------- 319 (538)
|.|.|++|.+|+..-. . -.-++||++.+.- .....++|+++-++.-|+|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889998875321 0 1237899999643 1223468999999999999999999875
Q ss_pred C-------CCCCEEEEEEEeccCC----------CCCcccEEEEEeCccCCCCC-CeEEEE
Q 009307 320 D-------PESQAVELAVYDWEQV----------GKHDKMGMNVVPLKELTPEE-PSVKTL 362 (538)
Q Consensus 320 ~-------~~~~~L~i~v~d~~~~----------~~d~~lG~~~i~l~~l~~~~-~~~~~~ 362 (538)
+ .+...+.++||+.+.. .+|-.||.+.||+.+|.... +...|+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~ 141 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY 141 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence 1 1256899999997632 34568999999999987542 333444
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.34 E-value=0.00033 Score=75.43 Aligned_cols=100 Identities=19% Similarity=0.394 Sum_probs=77.8
Q ss_pred CceEEEEEEEeeecCCCCCCCCcEEE-EEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009307 416 GGGLLVVIVHEAQDVEGKHHTNPYAR-ILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~-v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
-.|++.+++++|+ ++..|+|.. +++|.+.+||...++|.||+||+...|.+... .....++.|||.++ ++
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNR----LS 122 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCC----CC
Confidence 4789999999998 233588655 56677889999999999999999988888764 33467999999986 78
Q ss_pred CCceeEEEEEechhhcccc--eeceEEEeCCC
Q 009307 495 PKETLGYIDINLSDVVSNK--RINEKYHLIDS 524 (538)
Q Consensus 495 ~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~ 524 (538)
.++.+|.++++|.++...+ .+.+-|.+.++
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~ 154 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEPESACESFDLLDP 154 (644)
T ss_pred HHHhhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence 9999999999998887643 23334555554
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00037 Score=68.20 Aligned_cols=104 Identities=24% Similarity=0.358 Sum_probs=82.4
Q ss_pred CceEEEEEEEeeecCCCC----CCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009307 416 GGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
..|-+.|.|++|++|..+ -.++|||+|++.+. +.+|+...+|.+|.|.+...|.-. +....|.+.||-.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s--p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS--PPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC--CCccEEEEEEecc
Confidence 567899999999999643 26899999999653 349999999999999887777543 3456899999965
Q ss_pred ccCccCCCCCceeEEEEEechhhcccc-eeceEEEeCCC
Q 009307 487 SSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDS 524 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 524 (538)
-.. +..+.++|.+++-+.++-... ....||+|-+.
T Consensus 345 ygR---md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGR---MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccc---cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 332 567889999999999997654 67899999764
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.00036 Score=68.36 Aligned_cols=109 Identities=26% Similarity=0.426 Sum_probs=85.0
Q ss_pred CCeeEEEEEEEeecCCccCCCC-CCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE-e
Q 009307 257 RPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-D 332 (538)
Q Consensus 257 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d 332 (538)
..+|.+.|.|++|++|..+... ..++|||+|++.+. ...+.+|+...+|.+|.+.+...|.-. +....|.+.|| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 3579999999999999876532 36899999999654 344568999899999988877776654 34778999999 4
Q ss_pred ccCCCCCcccEEEEEeCccCCCCC-CeEEEEeccc
Q 009307 333 WEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~~ 366 (538)
+.++.++.|+|.+.+-+.+|.... ....|+++..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 566777789999999999998765 5566777643
No 249
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.01 E-value=0.017 Score=50.59 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=87.5
Q ss_pred CceEEEEEEEeeecCCCC-----CCCCc--EEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC------------CC
Q 009307 416 GGGLLVVIVHEAQDVEGK-----HHTNP--YARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP------------TN 476 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~-----~~~dp--yv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~------------~~ 476 (538)
....|++.|.+++-+-.. +..+. ++-+.++++.++|+.+..+.+|.|+|.|-|.+.... ..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 466788999988743210 23333 555566889999999999999999999999997642 13
Q ss_pred CeEEEEEEEcccCccCCCCCceeEEEEEechhhccccee--ceEEEeCCC------CCcEEEEEEEEEeC
Q 009307 477 DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRI--NEKYHLIDS------KNGRIQIELQWRTA 538 (538)
Q Consensus 477 ~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~------~~G~I~l~~~w~p~ 538 (538)
+.+++-|...+.+ +...++|+-.+....++..+.. .-..+|.+. +.|-+.++++..|.
T Consensus 87 ~pihivli~~d~~----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 87 DPIHIVLIRTDPS----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CceEEEEEEecCC----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 4688888877652 3458999999999999986643 455666543 25999999998874
No 250
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.00 E-value=0.00072 Score=66.87 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=93.0
Q ss_pred CCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEc--CccCCeeeeeecCCCCCCeEecEEEEEeeCC-----------CC
Q 009307 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT--EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-----------ES 323 (538)
Q Consensus 257 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~-----------~~ 323 (538)
.....|.+.|+++.+++........|-|+++.+. .......+|.++++|.+|.|+|.|.+.+... ..
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3456677888888887654422345778888763 2222345899999999999999999998751 13
Q ss_pred CEEEEEEEeccCC-CCCcccEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 324 QAVELAVYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 324 ~~L~i~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
..++|++|++..+ .+|.++|.|.+.|..|...-.....+++... .....|.|.+.+...-
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEec
Confidence 4689999998764 5678999999999999887666667776431 2457788888887763
No 251
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.95 E-value=0.0082 Score=59.93 Aligned_cols=112 Identities=17% Similarity=0.353 Sum_probs=88.3
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC------CCCCeEEEEEEEcccCccCC
Q 009307 420 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP------PTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~------~~~~~l~v~V~d~~~~~g~~ 493 (538)
+.+.|.+|++++......-.+...+++....|..+.++..|.||......+... .....|++++|.-+.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 578899999999876677899999999999999999999999999888877532 2345899999987732 2
Q ss_pred CCCceeEEEEEechhh---ccc--ceeceEEEeCCCC------CcEEEEEEE
Q 009307 494 HPKETLGYIDINLSDV---VSN--KRINEKYHLIDSK------NGRIQIELQ 534 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~------~G~I~l~~~ 534 (538)
+..+.+|.+.++|..+ ..+ ....+||+|.+.+ .-+|.|.+.
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ 130 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLS 130 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEE
Confidence 4678999999999988 443 3567999998762 355555543
No 252
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.69 E-value=0.047 Score=48.55 Aligned_cols=89 Identities=21% Similarity=0.300 Sum_probs=60.5
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEec
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDW 333 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~ 333 (538)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|.+.- +....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 45789999999987543 4688888855 433321 12344333 3679999999997752 3367899999997
Q ss_pred cCCC----CCcccEEEEEeCccC
Q 009307 334 EQVG----KHDKMGMNVVPLKEL 352 (538)
Q Consensus 334 ~~~~----~d~~lG~~~i~l~~l 352 (538)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999888763
No 253
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.24 E-value=0.2 Score=43.74 Aligned_cols=124 Identities=24% Similarity=0.335 Sum_probs=79.8
Q ss_pred CeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecC-CCCCCeEecEEEEEeeC--------CCCCEEEE
Q 009307 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRD--------PESQAVEL 328 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~w~e~f~f~v~~--------~~~~~L~i 328 (538)
..-.+.|++++..+++.. ...-||+...+.......+|.... .+..-.|||+|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 445678999999988762 223455554444331123343332 34457899999987652 12457889
Q ss_pred EEEeccCCCCCcccEEEEEeCccCCCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEeccC
Q 009307 329 AVYDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 393 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
.|+.....++...+|.+.++|.++... ......+++... ......|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 999885433446899999999999875 345555555321 245678999998887643
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.86 E-value=0.074 Score=47.27 Aligned_cols=91 Identities=29% Similarity=0.419 Sum_probs=62.9
Q ss_pred eEEEEEEEeeecCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEcccC
Q 009307 418 GLLVVIVHEAQDVEGKHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSR 489 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~ 489 (538)
..++|.|+++.++.-....+-||++.+ +++. ..|+.+.. .++.|||-.+|++ .+.+.+..|.+++|+....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 357899999998876656788888855 4443 24544443 7899999877765 4555677999999987642
Q ss_pred ccCCCCCceeEEEEEechhh
Q 009307 490 IGLLHPKETLGYIDINLSDV 509 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~l~~l 509 (538)
.+--.....+|.++++|-+-
T Consensus 87 ~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cCCCCceEEEEEEEEEEECC
Confidence 10001235799999999773
No 255
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.49 E-value=0.024 Score=61.44 Aligned_cols=90 Identities=23% Similarity=0.385 Sum_probs=68.3
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCcc----CCeeeeeecC-CCCCCeEecE-EEEE-eeCCCCCEEEEEEE
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKH-KNLNPEWNEE-YNFT-VRDPESQAVELAVY 331 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~-~t~nP~w~e~-f~f~-v~~~~~~~L~i~v~ 331 (538)
.+.+.|+|+++.-|..++ ...||.|.+-+-. .+.+||+++. ++.||+|+|+ |.|. |.-++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 478899999999997655 3589999985422 1345777665 7899999964 7775 33444578999999
Q ss_pred eccCCCCCcccEEEEEeCccCCCCC
Q 009307 332 DWEQVGKHDKMGMNVVPLKELTPEE 356 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
+++ ..++|+-.+|+..+..+-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999998874
No 256
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.45 E-value=0.22 Score=43.81 Aligned_cols=128 Identities=14% Similarity=0.185 Sum_probs=85.6
Q ss_pred CeeEEEEEEEeecCCccCCC--CCCCCcE--EEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-----------
Q 009307 258 PVGILHVKVVKAMNLKKKDL--LGASDPY--VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----------- 322 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~d~--~g~~dpy--v~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~----------- 322 (538)
....|.++|..++-....-. .+..+.- +.+.+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 45678899988875432211 1333444 444455655 58999999999999999999987442
Q ss_pred --CCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCe--EEEEecccccccCCCCCCccccEEEEEEEEEecc
Q 009307 323 --SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS--VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392 (538)
Q Consensus 323 --~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
.+.+.+.|...|..+...++|+-.++=..+...... ....++.... .......|-|.+++...|..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence 456888888887776678889888877766655443 4445443211 11234789999999988853
No 257
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.38 E-value=0.039 Score=52.96 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=78.2
Q ss_pred CCCeeEEEEEEEeecCCccCCC--CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEec
Q 009307 256 RRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (538)
Q Consensus 256 ~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (538)
....|+|.+++..+++|+-... .-.-+-||++..+.+. ..||.+.....-=.|.|+|+..+.+ ...+.+-||.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence 3467999999999999985432 2345889999987654 2466665555555799999998875 36788999999
Q ss_pred cCCCCCcccEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 334 EQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+.-.++++.-.-.+.+..+... ..+...+. -..+|++.+++.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 8776777644334444443322 22223332 34678777777554
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.34 E-value=0.12 Score=46.76 Aligned_cols=91 Identities=20% Similarity=0.377 Sum_probs=63.5
Q ss_pred EEEEEEEeeecCCC-CCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEcccC
Q 009307 419 LLVVIVHEAQDVEG-KHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSR 489 (538)
Q Consensus 419 ~L~v~v~~a~~L~~-~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~ 489 (538)
.++|+|+++.++.. ....+-||++.+ |++. ..|+.+....++.|||.++|.+ .+.+.+..|.+.||+....
T Consensus 9 ~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~ 88 (173)
T cd08693 9 KFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKK 88 (173)
T ss_pred CEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEeccc
Confidence 57899999999876 445667777644 5543 3666666567899999888755 4556677999999986531
Q ss_pred c-c-----------CCCCCceeEEEEEechhh
Q 009307 490 I-G-----------LLHPKETLGYIDINLSDV 509 (538)
Q Consensus 490 ~-g-----------~~~~d~~lG~~~i~l~~l 509 (538)
. | --+.+..||.++++|-+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 89 AKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccCcceEEEEEeEEEEcc
Confidence 0 0 001246899999999763
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.27 E-value=0.11 Score=46.98 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=60.2
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEee--C-CCCCEEEEEEEec
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 333 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 333 (538)
..++|+|+++.++...+ ...+-||.+.+ |++... ...|+....+.++.|||.+.|.+. + +....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 46899999999998622 34567777644 444331 224555554567999999999765 2 3367899999997
Q ss_pred cCCC----------------CCcccEEEEEeCcc
Q 009307 334 EQVG----------------KHDKMGMNVVPLKE 351 (538)
Q Consensus 334 ~~~~----------------~d~~lG~~~i~l~~ 351 (538)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5422 13467877777655
No 260
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.18 E-value=0.21 Score=39.28 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=59.8
Q ss_pred CCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeEE
Q 009307 281 SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360 (538)
Q Consensus 281 ~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++-.+++.+++... .+|.-. ...+..|++.|.+.+.. +.+|+|.||-+|- ..+.|...+.|++... ..
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEcCeEE--eecccc-ccccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 57788888887553 466553 33578999999999965 5899999998763 3577888888888322 22
Q ss_pred EEecccccccCCCCCCccccEEEEEEEE
Q 009307 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (538)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.++ -.+.|.+...++|
T Consensus 77 ~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 77 QLD------------MEPQLCLVAELTF 92 (98)
T ss_pred eec------------cccccEEEEEEEe
Confidence 222 3467888888877
No 261
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.11 E-value=0.79 Score=39.91 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=76.4
Q ss_pred eEEEEEEEeeecCCCCCCCCcEEEEEECCeE---EEeee-ecCCCCCcccceEEEEecCC---C---C-CCeEEEEEEEc
Q 009307 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE---RKTKH-VKKNRDPRWEEEFQFMLEEP---P---T-NDRLHVEVCSV 486 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~---~kT~v-~~~t~nP~w~e~f~f~v~~~---~---~-~~~l~v~V~d~ 486 (538)
-.+.+.+++..+++. ....-||+...++.. .+|.. ......-.|||.|.+.+.-. . . ...+.+.|+..
T Consensus 7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~ 85 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV 85 (143)
T ss_pred EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence 356788888888876 233345555555543 34433 33456678999998877521 1 1 12688888876
Q ss_pred ccCccCCCCCceeEEEEEechhhccc--ceeceEEEeCCC--CCcEEEEEEEEEe
Q 009307 487 SSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLIDS--KNGRIQIELQWRT 537 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~--~~G~I~l~~~w~p 537 (538)
... +....+|.+.++|++.... ......++|... .+..+++++++.+
T Consensus 86 ~~~----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 86 DGS----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred cCC----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 321 1236999999999999884 466778888775 3688888888765
No 262
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.06 E-value=0.13 Score=45.72 Aligned_cols=93 Identities=24% Similarity=0.345 Sum_probs=61.4
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccC-CeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEec
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDW 333 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~ 333 (538)
..++|++....++...+ ....+-||.+.+ +++.. ....|.....+.++.|||...|.+.- +....|.+.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888888776521 234566777754 44322 22234433334789999999998642 3367899999998
Q ss_pred cCCC--CCcccEEEEEeCccCC
Q 009307 334 EQVG--KHDKMGMNVVPLKELT 353 (538)
Q Consensus 334 ~~~~--~d~~lG~~~i~l~~l~ 353 (538)
+..+ ++..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7554 4678999999987743
No 263
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.84 E-value=0.054 Score=58.91 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=67.9
Q ss_pred CceEEEEEEEeeecCCCCCCCCcEEEEEECC-------eEEEeeeec-CCCCCcccc-eEEEEecCCCCCCeEEEEEEEc
Q 009307 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVK-KNRDPRWEE-EFQFMLEEPPTNDRLHVEVCSV 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~-~t~nP~w~e-~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
-.+.+.|+|++++=|..+ ....||+|.+-| +.++|+++. ++.||+|+| .|.|.-.-.+.-..|.|.|++.
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 456789999999977654 566999999955 345888777 589999996 4888654444456899999987
Q ss_pred ccCccCCCCCceeEEEEEechhhccc
Q 009307 487 SSRIGLLHPKETLGYIDINLSDVVSN 512 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~l~~l~~~ 512 (538)
+ ..+||+-.++++.+..+
T Consensus 780 g--------gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 780 G--------GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred C--------CceeeeeccchhcccCc
Confidence 5 47999999999888654
No 264
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.19 E-value=0.32 Score=43.29 Aligned_cols=89 Identities=24% Similarity=0.407 Sum_probs=60.2
Q ss_pred EEEEEEEeeecCCC--CCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEccc
Q 009307 419 LLVVIVHEAQDVEG--KHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSS 488 (538)
Q Consensus 419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~ 488 (538)
.++|.+++..+... ....+-||++.+ +++. ..|.......++.|||-.+|++ .+.+.+..|.+.+|+...
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 46777888777654 234556777644 4442 2444444457899999988875 455567799999999764
Q ss_pred CccCCCCCceeEEEEEechhh
Q 009307 489 RIGLLHPKETLGYIDINLSDV 509 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~l~~l 509 (538)
.. -..+..||.++++|-+-
T Consensus 89 ~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 89 PG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred CC--CCcceEEEEEeEEeEcc
Confidence 20 01357999999999774
No 265
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.85 E-value=0.25 Score=44.71 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=62.9
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCCe-eeeeecC----CCCCCeEecEEEEEeeC---CCCCEEEE
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPS-KKTTVKH----KNLNPEWNEEYNFTVRD---PESQAVEL 328 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~----~t~nP~w~e~f~f~v~~---~~~~~L~i 328 (538)
...+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+.- +....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3568899999999987654445788888855 4433211 1333211 12357799999988752 33678999
Q ss_pred EEEeccCCC---------CCcccEEEEEeCccC
Q 009307 329 AVYDWEQVG---------KHDKMGMNVVPLKEL 352 (538)
Q Consensus 329 ~v~d~~~~~---------~d~~lG~~~i~l~~l 352 (538)
.+|+....+ .+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 346899998887664
No 266
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.58 E-value=0.46 Score=43.04 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=45.7
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCCeeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEecc
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWE 334 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~~ 334 (538)
.++|+|.++.++. .+......-||++.+ ++......+|+...-+.+|.|||...|.+.- +....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4678888887433 222222335555533 4333323356666667789999999888652 33678999999974
No 267
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.43 E-value=1.2 Score=40.22 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=54.2
Q ss_pred CCCcEEEEEEcCccCCeeeeeecC--CCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCC
Q 009307 280 ASDPYVKLKITEDKLPSKKTTVKH--KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (538)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~~T~v~~--~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+..-|+++.++++.. .+|+... ....-.|||.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 446799999998765 3554433 334456889999999875 6789999999886 6788999999998665543
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.41 E-value=0.24 Score=44.10 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=52.1
Q ss_pred CCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEeccCCCCCcccEEEEEeCccC
Q 009307 279 GASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352 (538)
Q Consensus 279 g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l 352 (538)
..+|-||.+.+ ++.... ..+|+.+.-+..+.|||...|++.- +....|.|+||+.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45677888765 333221 1245555556678899999998752 33678999999988666677999999988764
No 269
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.20 E-value=0.44 Score=41.62 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=44.1
Q ss_pred EcCccCC--eeeeeecCCC-CCCeEecEEEEEee---CCCCCEEEEEEEeccCCCCC----cccEEEEEeCccC
Q 009307 289 ITEDKLP--SKKTTVKHKN-LNPEWNEEYNFTVR---DPESQAVELAVYDWEQVGKH----DKMGMNVVPLKEL 352 (538)
Q Consensus 289 ~~~~~~~--~~~T~v~~~t-~nP~w~e~f~f~v~---~~~~~~L~i~v~d~~~~~~d----~~lG~~~i~l~~l 352 (538)
.|++... ...|....-+ .++.|||...|.+. -+....|.|.||+.+....+ ..||.+.++|-+.
T Consensus 12 ~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 12 HGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp ETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred ECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 3554443 2356555555 79999999999875 23477899999998865555 6899999998775
No 270
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.11 E-value=1.4 Score=34.69 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcccce
Q 009307 436 TNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 514 (538)
Q Consensus 436 ~dpyv~v~~~~~~~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~~~ 514 (538)
.+..+.+.+.++.. .|.-. ...+..|++.|.+.+... ..|.|.|+-+|- ..+-|-..+.|.+...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs---RELEI~VywrD~-------RslCav~~lrLEd~~~--- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS---RELEIAVYWRDW-------RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc---cEEEEEEEEecc-------hhhhhheeeEhhhhcc---
Confidence 56677888877654 45433 346889999999998753 689999998763 3677888888888422
Q ss_pred eceEEEeCCCCCcEEEEEEEE
Q 009307 515 INEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 515 ~~~~~~L~~~~~G~I~l~~~w 535 (538)
....++ .++|.+...+.|
T Consensus 75 -~~~~~l--epqg~l~~ev~f 92 (98)
T cd08687 75 -EVQLDM--EPQLCLVAELTF 92 (98)
T ss_pred -cceecc--ccccEEEEEEEe
Confidence 122233 357887777665
No 271
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.15 E-value=0.67 Score=41.31 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=51.3
Q ss_pred CCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccCccCCCCCceeEEEEEec
Q 009307 435 HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL 506 (538)
Q Consensus 435 ~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l 506 (538)
.++-||++.+ +++. ..|+.+.-+..+.|||-.+|++. +.+.+..|.++||+.... +....+|.++++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~----~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT----GKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC----CCceEEEEEEEee
Confidence 4667777755 4442 26666666778899998777764 555667999999998642 3467999999999
Q ss_pred hhh
Q 009307 507 SDV 509 (538)
Q Consensus 507 ~~l 509 (538)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 764
No 272
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.01 E-value=2.2 Score=38.44 Aligned_cols=96 Identities=16% Similarity=0.337 Sum_probs=66.7
Q ss_pred CCCcEEEEEECCeEE-Eeeeec--CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307 435 HTNPYARILFRGEER-KTKHVK--KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 511 (538)
Q Consensus 435 ~~dpyv~v~~~~~~~-kT~v~~--~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~ 511 (538)
...-|+++.++++.. +|+... ..-.-.|+|.|.+.+...| +.|.++||.... ..+..|+.+.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~~-----~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKSG-----LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEccC-----ccceEEEEEEeeCCCCcc
Confidence 456799999999875 554433 3333458999999998754 689999998863 468899999999866543
Q ss_pred c--ce--eceEEEeCCC------------------------CCcEEEEEEEEEe
Q 009307 512 N--KR--INEKYHLIDS------------------------KNGRIQIELQWRT 537 (538)
Q Consensus 512 ~--~~--~~~~~~L~~~------------------------~~G~I~l~~~w~p 537 (538)
. .. ..++|.+... -+|+|.+++.|-.
T Consensus 109 ~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~ 162 (168)
T PF15625_consen 109 HTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAV 162 (168)
T ss_pred cccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeC
Confidence 2 11 3455555310 1599999999953
No 273
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.24 E-value=1.5 Score=38.25 Aligned_cols=56 Identities=27% Similarity=0.523 Sum_probs=40.2
Q ss_pred EeeeecCC-CCCcccceEEEEe--cCCCCCCeEEEEEEEcccCccCCCCC----ceeEEEEEechhh
Q 009307 450 KTKHVKKN-RDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPK----ETLGYIDINLSDV 509 (538)
Q Consensus 450 kT~v~~~t-~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~~g~~~~d----~~lG~~~i~l~~l 509 (538)
.|+....+ .++.|||..+|.+ .+.+.+..|.+.||..+.. ..+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence 56666665 8999999877765 5666777999999988753 223 6999999999775
No 274
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.31 E-value=2.5 Score=38.28 Aligned_cols=91 Identities=12% Similarity=0.142 Sum_probs=56.2
Q ss_pred EEEEEEEeeecCCCCC--CCCcEEEEEE--CCeE---EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccC
Q 009307 419 LLVVIVHEAQDVEGKH--HTNPYARILF--RGEE---RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 489 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~~--~~dpyv~v~~--~~~~---~kT~v~~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~ 489 (538)
.++|.|+++.++.... ...-||++.+ ++.. .+|+...-+.++.|||-.+|.+. +.+....|.+.||+....
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence 4667777776432222 2334666533 4432 25666666778999998777664 555667999999986321
Q ss_pred c------c------CCCCCceeEEEEEechhh
Q 009307 490 I------G------LLHPKETLGYIDINLSDV 509 (538)
Q Consensus 490 ~------g------~~~~d~~lG~~~i~l~~l 509 (538)
. | .-..+..||.+++.|-+-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cccccccccccccccccccceEEEEEEEEEcC
Confidence 0 0 001256899999998774
No 275
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=89.46 E-value=3.3 Score=40.70 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=74.7
Q ss_pred CceEEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCC--cccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009307 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDP--RWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP--~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
..-.|-|.|++..++... ...|+.+..+....+|..+.-+..- .-++.....++. .+..|++.++... +
T Consensus 56 RkF~LLVeI~EI~~i~k~--khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-----L 126 (508)
T PTZ00447 56 RTFYLLVKINEIFNINKY--KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-----L 126 (508)
T ss_pred ceeeEEEEehhhhccccc--eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc-----c
Confidence 344577777777777653 5679999999988888665533322 233445555543 3458999998775 5
Q ss_pred CCCceeEEEEEechh-hcccc-eeceEEEeCCCC--CcEEEEEE
Q 009307 494 HPKETLGYIDINLSD-VVSNK-RINEKYHLIDSK--NGRIQIEL 533 (538)
Q Consensus 494 ~~d~~lG~~~i~l~~-l~~~~-~~~~~~~L~~~~--~G~I~l~~ 533 (538)
.+..-||.+.+.++. +++.. +..+||.+...+ .++|.|++
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 678899999999965 44443 567999996554 47777765
No 276
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=89.28 E-value=3.7 Score=37.51 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=41.2
Q ss_pred CeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCCC--CCcccEEEEEeCc
Q 009307 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVG--KHDKMGMNVVPLK 350 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~--~d~~lG~~~i~l~ 350 (538)
..++|.|...+.+|.|+|++.+.+... ....|.|++++..... ....+|-+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 346889999999999999999988643 3667888887754221 1256888888874
No 277
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=87.87 E-value=1.2 Score=43.17 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=72.6
Q ss_pred CCceEEEEEEEeeecCCCC----C-CCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307 415 AGGGLLVVIVHEAQDVEGK----H-HTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~----~-~~dpyv~v~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
..+|+|.+++..+++|... | ..+-|+.+....+. .+|.+......-.|.|.|+..+.+. +.+.+-||.++.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence 3689999999999998542 2 45678888886543 3666655555667899999988763 578888887764
Q ss_pred CccCCCCCc--eeEEEEEechhhcccceeceEEEeCCCCCcEEEEEEEE
Q 009307 489 RIGLLHPKE--TLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~--~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~I~l~~~w 535 (538)
. .+.+ ..| -+.+..+ .++..++.+.|.-.++|++.+++.+
T Consensus 125 q----~RHKLC~~g--~l~~~~v-~rqspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 Q----RRHKLCHLG--LLEAFVV-DRQSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred h----hhccccccc--hhhhhhh-hhcCCcceeeeecccCCCCceeccc
Confidence 2 1222 344 2333333 2334456677766678888777654
No 278
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=87.86 E-value=3 Score=37.71 Aligned_cols=93 Identities=25% Similarity=0.329 Sum_probs=60.8
Q ss_pred ceEEEEEEEeeecCCCC---CCCCcEEEEEE--CCeE----EEeeeec----CCCCCcccceEEEEec--CCCCCCeEEE
Q 009307 417 GGLLVVIVHEAQDVEGK---HHTNPYARILF--RGEE----RKTKHVK----KNRDPRWEEEFQFMLE--EPPTNDRLHV 481 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~--~~~~----~kT~v~~----~t~nP~w~e~f~f~v~--~~~~~~~l~v 481 (538)
...+.|+|.++.+++.. ...+-||++.+ +++. ..|+... -...+.|||-.+|.+. +.+.+..|.+
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 44678889999988764 24677888755 5443 2444322 2346779998777664 4455679999
Q ss_pred EEEEcccCc-c----CCCCCceeEEEEEechhh
Q 009307 482 EVCSVSSRI-G----LLHPKETLGYIDINLSDV 509 (538)
Q Consensus 482 ~V~d~~~~~-g----~~~~d~~lG~~~i~l~~l 509 (538)
.+|+..... + .-..+..||.++++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999876420 0 000357999999999764
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.58 E-value=3.5 Score=33.50 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=46.5
Q ss_pred EEEEEEeecCCccCCCCCCCCcEEEEEE--cCccCC-eeeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEEecc
Q 009307 262 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWE 334 (538)
Q Consensus 262 L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~~ 334 (538)
+.+++..+.+..-......+|-||.+.+ +++... ...|+.+.-...+.|||...|++.- +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566667766654433223578888865 443321 1245555555568999999987652 33678999999865
No 280
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.49 E-value=3.4 Score=37.76 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=34.6
Q ss_pred eeeeeecCCCCCCeEecEEEEEeeCCC--CCEEEEEEEeccCCCC---CcccEEEEEeCcc
Q 009307 296 SKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGK---HDKMGMNVVPLKE 351 (538)
Q Consensus 296 ~~~T~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~---d~~lG~~~i~l~~ 351 (538)
...|.+..++.+|.|+|+|.+.+.... ...|.|++++...-.+ +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888889999999999999887543 6689999998653221 1689999999887
No 281
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.43 E-value=7 Score=35.85 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=41.5
Q ss_pred CeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCC-CCC---cccEEEEEeCc
Q 009307 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-GKH---DKMGMNVVPLK 350 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-~~d---~~lG~~~i~l~ 350 (538)
...+|.|...+.+|.|+|++.+.+... ....|.|++++.... .+| ..+|-+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888999999999999988643 367899999875421 122 46888888874
No 282
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.61 E-value=6.1 Score=32.58 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=47.6
Q ss_pred EEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCC-------CCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCC
Q 009307 284 YVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356 (538)
Q Consensus 284 yv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~-------~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
||.+.+-.-. ...|.++. +.+|.+|-+-.|.|... .+..+.++++..- ....+.+|.+.+++..+....
T Consensus 2 Fct~dFydfE--tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFE--TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT-----EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeecee--eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCC
Confidence 3444443332 34677765 78999998888887643 2568999998875 334678999999999988554
Q ss_pred C--eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009307 357 P--SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (538)
Q Consensus 357 ~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
. ......+.. .++..-|.|...++..
T Consensus 78 ~~~i~~~~~l~g-------~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 78 GERIHGSATLVG-------VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp S--EEEEEEE-B-------SSS-TSEEEEEEEEEE
T ss_pred CceEEEEEEEec-------cCCCeEEEEEEEEEec
Confidence 3 223333321 1244788888777654
No 283
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=80.46 E-value=9.9 Score=31.33 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=49.6
Q ss_pred EEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCC------CCCeEEEEEEEcccCccCCCCCceeEEEEEechhhcc
Q 009307 439 YARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPP------TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 511 (538)
Q Consensus 439 yv~v~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~------~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~ 511 (538)
||.+.+-. +.+.|.++. +.+|.+|-+-.|.+.... ....+.++++..-. ..-..+|.+++++.++++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-----~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-----SDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-----S-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-----CCeEEEEEEEeechhhhc
Confidence 45555544 445666665 899999988888776431 12478999987642 235799999999999996
Q ss_pred cc--eeceEEEeCCCC---CcEEEEEEEEEe
Q 009307 512 NK--RINEKYHLIDSK---NGRIQIELQWRT 537 (538)
Q Consensus 512 ~~--~~~~~~~L~~~~---~G~I~l~~~w~p 537 (538)
+. .+...-.|.+.. -|.++..++.+-
T Consensus 76 ~~~~~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 76 SNGERIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp --S--EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred CCCceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 43 466667776543 488887777653
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.27 E-value=9.2 Score=34.91 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=34.6
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechh
Q 009307 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSD 508 (538)
Q Consensus 448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~ 508 (538)
...|.+..++.+|.|+|+|.+.++.... ...|.+++++...+.+ -..+..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-S-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-cCccceeEEEEEEeee
Confidence 3578888899999999999999986532 2378888887654311 0112799999999987
No 285
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=79.82 E-value=4.5 Score=45.04 Aligned_cols=107 Identities=11% Similarity=0.197 Sum_probs=77.4
Q ss_pred CCcEEEEEEcCccCCeeeeeecCCC-CCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccCCCCCCeE
Q 009307 281 SDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359 (538)
Q Consensus 281 ~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 359 (538)
.++|+.+.+..... .+|..+.+. .+|.|.+.|....... ...+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 48999999986654 467777776 7899999998887665 5678888888887776789999999999999876666
Q ss_pred EEEecccccccCCCCCCccccEEEEEEEEEeccCC
Q 009307 360 KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 394 (538)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
.+++++..-. ......-.+.+++.|.+....
T Consensus 215 ~~~~Il~~d~----~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDNDG----KPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccCC----ccccCCcccceEEeeEeechh
Confidence 6666643211 112223356677777776553
No 286
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=77.13 E-value=3.3 Score=46.06 Aligned_cols=97 Identities=14% Similarity=0.275 Sum_probs=74.4
Q ss_pred CCCcEEEEEECCeE-EEeeeecCC-CCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCceeEEEEEechhhccc
Q 009307 435 HTNPYARILFRGEE-RKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN 512 (538)
Q Consensus 435 ~~dpyv~v~~~~~~-~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~l~~~ 512 (538)
..++|+.+.+.... .+|...... .+|.|.+.|+..+... ...+++.+-+.+- .+....+|.+.++.-.+..+
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~----~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV----PGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc----ccceeEEEEeccchhhhhcc
Confidence 47899999997754 477777766 8999999998888763 3578888877663 34478999999999999998
Q ss_pred ceeceEEEeCCCC------CcEEEEEEEEEe
Q 009307 513 KRINEKYHLIDSK------NGRIQIELQWRT 537 (538)
Q Consensus 513 ~~~~~~~~L~~~~------~G~I~l~~~w~p 537 (538)
....+|+++.+.. ...+.+++.++|
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeEe
Confidence 8888999986532 345556677665
No 287
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=74.68 E-value=19 Score=29.13 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=43.1
Q ss_pred EEEEEEeeecCCCC--C-CCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcc
Q 009307 420 LVVIVHEAQDVEGK--H-HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVS 487 (538)
Q Consensus 420 L~v~v~~a~~L~~~--~-~~dpyv~v~~--~~~~----~kT~v~~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~ 487 (538)
+.+.+....+.... . ..+-||++.+ +++. ..|+.+.-...+.|||-.+|++. +.+.+..|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 44555555555432 1 2367777754 4443 25555555667899998777654 4455679999999864
No 288
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=73.59 E-value=36 Score=31.07 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=40.4
Q ss_pred eeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCC--C-------CCcccEEEEEeCcc
Q 009307 296 SKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV--G-------KHDKMGMNVVPLKE 351 (538)
Q Consensus 296 ~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~--~-------~d~~lG~~~i~l~~ 351 (538)
...|.|...+.+|.|+|++.+.+.-. ....|.|+.|+...- . ....+|-+-+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788888999999999999887633 366899999986521 1 12457777777654
No 289
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=72.07 E-value=10 Score=34.37 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=38.5
Q ss_pred eeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCC-----CCCcccEEEEEeCcc
Q 009307 299 TTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-----GKHDKMGMNVVPLKE 351 (538)
Q Consensus 299 T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-----~~d~~lG~~~i~l~~ 351 (538)
|.++..+.+|.|+|++.+.+... ....|.|++|+...- .....+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444449999999999988643 367899999986532 235578988888865
No 290
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=70.65 E-value=16 Score=33.39 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=41.1
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEechh
Q 009307 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSD 508 (538)
Q Consensus 448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~~ 508 (538)
..+|.+..++.+|.|+|++.+.++.... ...|.++++...... -.....+|-+-++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~--k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD--KGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc--CCCCCceEEEEEeecc
Confidence 3488999999999999999998875422 236777776543220 0123679999999843
No 291
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=69.23 E-value=1.7 Score=47.42 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=71.5
Q ss_pred cchHHHHHHHHhhchhHHHH--HHHHHHHHHHHHHHh-cCCCceeeeEEEeEeeCCCCCCeEeeeEEEec-CCCeEEEEe
Q 009307 69 DRVDWLNKFLELMWPYLDKA--ICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEP 144 (538)
Q Consensus 69 E~~~WlN~~l~~~W~~~~~~--~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~l~~ 144 (538)
|.+-|||.++.++..-+.+. ..+.+++.++.++.. ..|++ ++.+--.+..-|..||.|++.++... ..+...++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 56789999999988754433 555666666666666 57888 88888889999999999999999874 456667888
Q ss_pred eeeEeCCCCeEEEEEE
Q 009307 145 CLKWAANPNVTIGVKA 160 (538)
Q Consensus 145 ~~~~~~~~~i~l~~~~ 160 (538)
|+.|.||..+.+..++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999998877766544
No 292
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=67.61 E-value=16 Score=33.17 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=40.6
Q ss_pred CeeeeeecCCCCCCeEecEEEEEeeCC--CCCEEEEEEEeccCCCC------CcccEEEEEeCcc
Q 009307 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGK------HDKMGMNVVPLKE 351 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~------d~~lG~~~i~l~~ 351 (538)
....|.|...+.+|.|+|++.+.+... ....|.|+.|+.+.-.+ ...+|-+-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 346788889999999999999887643 35689999998542211 2457777766643
No 293
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=67.52 E-value=22 Score=32.71 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=41.2
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCceeEEEEEech
Q 009307 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLS 507 (538)
Q Consensus 448 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~l~ 507 (538)
..+|.+..+..+|.|+|++.+.++.... ...|.++++....+..-=..+..+|-+-++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4588899999999999999998875322 23788888654321000012357999999985
No 294
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=62.20 E-value=1.2e+02 Score=27.19 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=52.6
Q ss_pred EEEEEeeecCCCCCCCCcEEEEEEC---------C-e-EEEeeeecC-----CCCCcccceEEEEecCCCC--CCeEEEE
Q 009307 421 VVIVHEAQDVEGKHHTNPYARILFR---------G-E-ERKTKHVKK-----NRDPRWEEEFQFMLEEPPT--NDRLHVE 482 (538)
Q Consensus 421 ~v~v~~a~~L~~~~~~dpyv~v~~~---------~-~-~~kT~v~~~-----t~nP~w~e~f~f~v~~~~~--~~~l~v~ 482 (538)
.-.|.+|.+... .+-||+-.+. + . ...|...+. ...-.||..|++.+..... -.+|.++
T Consensus 5 ~G~I~~a~~f~~---~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~ 81 (168)
T PF07162_consen 5 IGEIESAEGFEE---DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQ 81 (168)
T ss_pred EEEEEEEECCCC---CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEE
Confidence 345777886654 3668887762 1 2 345555543 3445699888887764322 2489999
Q ss_pred EEEcccCccCCCCCceeEEEEEech
Q 009307 483 VCSVSSRIGLLHPKETLGYIDINLS 507 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~l~ 507 (538)
|+..|. ++++.+.|...+.|-
T Consensus 82 V~~~D~----~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 82 VYSLDS----WGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEcc----cCCeEEeEEeEEEeC
Confidence 999886 678888888766663
No 295
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=55.93 E-value=11 Score=41.85 Aligned_cols=74 Identities=27% Similarity=0.320 Sum_probs=55.4
Q ss_pred cCCCCeeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCc--cCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEE
Q 009307 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (538)
Q Consensus 254 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (538)
......|.+.+.+++|..+... ..-||...+..- ...+.+|.++.+|..|.||++|+..+.. .+.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 4455679999999999988643 367888776532 2234689999999999999999988764 466667776
Q ss_pred ecc
Q 009307 332 DWE 334 (538)
Q Consensus 332 d~~ 334 (538)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 654
No 296
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=55.38 E-value=57 Score=29.63 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=42.4
Q ss_pred eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccC--CCCCceeEEEEEechh
Q 009307 447 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGL--LHPKETLGYIDINLSD 508 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~--~~~d~~lG~~~i~l~~ 508 (538)
....|.+..++.+|.|+|.+.+.++-... ...|.+++++-.....- -..+..+|.+-++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 44588899999999999999998875422 23688888874432100 0123579999898854
No 297
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.95 E-value=4.3 Score=43.92 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCCCCEEEEEEEeccCCCCCcccEEEEEeCccC
Q 009307 280 ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352 (538)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~l~~l 352 (538)
..|||+.+.+.-... ..+.+...+.+|.|+|+|...+.. ...+.+.|+.......+.+...+++..+++
T Consensus 27 al~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 458898888764332 234446789999999999999765 467889998876555554444444444433
No 298
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=48.72 E-value=57 Score=29.51 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=39.2
Q ss_pred eeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCcc-CCCCCceeEEEEEechh
Q 009307 451 TKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIG-LLHPKETLGYIDINLSD 508 (538)
Q Consensus 451 T~v~~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~g-~~~~d~~lG~~~i~l~~ 508 (538)
|.++....+|.|+|+|.+.++... ....|.+++++-..... --.....+|.+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 444444599999999999986542 23478888887653210 01235789999999976
No 299
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.04 E-value=96 Score=28.33 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=42.5
Q ss_pred eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccC-----CCCCceeEEEEEechh
Q 009307 447 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGL-----LHPKETLGYIDINLSD 508 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~g~-----~~~d~~lG~~~i~l~~ 508 (538)
....|.+..++.+|.|.|++.+.++-... ...|.++.+.-....+- -..+..+|.+-++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 35588899999999999999988875422 23688888865421000 0123579999999865
No 300
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=42.59 E-value=11 Score=29.68 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=37.0
Q ss_pred ccCHHHHHhhcCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHH
Q 009307 46 ERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAIC 90 (538)
Q Consensus 46 ~~~~~~~~~~~~~~p~w~~~~~~E~~~WlN~~l~~~W~~~~~~~~ 90 (538)
+.|.+-++--|++||+|+--.|.-.-.-.|++...+|.+.+.+++
T Consensus 26 k~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 26 KKDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred cccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 344444555688999999999988888999999999998888776
No 301
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=41.46 E-value=21 Score=39.88 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=59.6
Q ss_pred CCCceEEEEEEEeeecCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009307 414 PAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (538)
Q Consensus 414 ~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
+...|.+.+.+++|..+... .+-||...+.. .+-+|+++.+|..|.||+.|+..+... +...++.++++.
T Consensus 755 pl~ygflh~~vhsat~lkqs--~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s---qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLKQS--RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES---QSSRLEKTEKST 829 (1112)
T ss_pred cccccceeeeeccccccccc--cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc---cccchhhhcccc
Confidence 44678889999999888653 56788777642 344899999999999999999887653 344455554432
Q ss_pred CccC------CCCCceeEEEEEechhh
Q 009307 489 RIGL------LHPKETLGYIDINLSDV 509 (538)
Q Consensus 489 ~~g~------~~~d~~lG~~~i~l~~l 509 (538)
.... ...+...|+..+.+.--
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~~ 856 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDPQ 856 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCcc
Confidence 1000 22345566665555433
No 302
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=40.04 E-value=2.9e+02 Score=27.67 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=69.1
Q ss_pred eeEEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCe--EecEEEEEeeCCCCCEEEEEEEeccCC
Q 009307 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPE--WNEEYNFTVRDPESQAVELAVYDWEQV 336 (538)
Q Consensus 259 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~--w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (538)
.=.|-|.|.+-.++.. ....|+.++.|.... +|..+.-+..-. -++.....+. ..+.+|++.+|-.. +
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkIR-QcDnTLkI~lfKKk-L 126 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKIR-QCDETLRVDLFTTK-L 126 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeeee-ecCceEEEEEEecc-c
Confidence 3456677777665543 346799999886553 454433222222 2343444443 34778999999876 4
Q ss_pred CCCcccEEEEEeCcc-CC-CCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009307 337 GKHDKMGMNVVPLKE-LT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~-l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
.+...||...+.+.. +. ..=++..|+.+.+ ++...++|.+++.
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEeh
Confidence 567889999999876 22 3335666776643 3667788877763
No 303
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=39.68 E-value=1.2e+02 Score=34.17 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=46.2
Q ss_pred eEEEEEEEeecCCccCCCCCCCCcEEEEEE----cCccCCe-eeeeecCCCCCCeEecEEEEEeeC---CCCCEEEEEEE
Q 009307 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI----TEDKLPS-KKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 331 (538)
Q Consensus 260 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~----~~~~~~~-~~T~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 331 (538)
.-++|+++++.++.. ....|-+|.|.. |++.... .+|.-+..+.+|.||+..+|.+.- |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 457888888776542 233466666654 3443322 355555668899999998888763 23567888888
Q ss_pred ec
Q 009307 332 DW 333 (538)
Q Consensus 332 d~ 333 (538)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 304
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=39.05 E-value=95 Score=35.06 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=58.5
Q ss_pred ceEEEEEEEeeecCCCCCCCCcEEEEEE----CCe----EEEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEc
Q 009307 417 GGLLVVIVHEAQDVEGKHHTNPYARILF----RGE----ERKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSV 486 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~----~~~----~~kT~v~~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~ 486 (538)
...+++.++++.++.-....|-+|.|.. |++ .+.|..+..+.+|.||+..+|.+ .+.|....|.+.|+..
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 3457888888876544334556666554 332 24666677799999999866665 4555556788877755
Q ss_pred cc------------CccCCCCCceeEEEEEechhhc
Q 009307 487 SS------------RIGLLHPKETLGYIDINLSDVV 510 (538)
Q Consensus 487 ~~------------~~g~~~~d~~lG~~~i~l~~l~ 510 (538)
.. .++.-+.+..+|.+++.|-|-.
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~k 457 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHK 457 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeech
Confidence 20 0010124568899888886643
No 305
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.35 E-value=2e+02 Score=25.31 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=32.4
Q ss_pred CCCCC-eEecEEEEEeeCCC---CCEEEEEEEeccCCCCCcccEEEEEeC
Q 009307 304 KNLNP-EWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPL 349 (538)
Q Consensus 304 ~t~nP-~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~~d~~lG~~~i~l 349 (538)
+-.|| +||--++....... =..|.+.||..|..++|-..|-..+.+
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hi 108 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHI 108 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEec
Confidence 44455 57765555554321 246899999999999999999877654
No 306
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=36.94 E-value=3.8e+02 Score=28.05 Aligned_cols=88 Identities=13% Similarity=0.194 Sum_probs=48.1
Q ss_pred CCCCCCeEeeeEEEecCCCeEEEEeeeeEeCCCCeEEEEEEeceeeEEEEEeEEEEEEEEEEEecCCCCCCeeEEEEEEc
Q 009307 120 LGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSL 199 (538)
Q Consensus 120 lG~~~P~i~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf 199 (538)
.|..--+|+++++|. .++.+++.+++.-+ +.|++.+.=+|..+. --..+. |
T Consensus 280 ~~~~~v~v~~v~v~g-~~~rl~i~~~~~g~------------------------~~G~i~l~G~P~yD~--~~~~l~--l 330 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYG-SGDRLVIALDVTGS------------------------LNGTIYLSGRPVYDP--ATQTLR--L 330 (427)
T ss_pred CCCceEEEEEEEEEe-cCCcEEEEEEEEEE------------------------EEEEEEEEEEEEECC--CCCEEE--E
Confidence 666667788888887 55555554444222 445554444444331 112222 2
Q ss_pred CCCCeEEEEEEEccccccccchHHHHHHHHHHHHHhhhcccCc
Q 009307 200 MEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPK 242 (538)
Q Consensus 200 ~~~P~id~~~~~~g~~~~~~P~l~~~i~~~i~~~l~~~~v~P~ 242 (538)
-++||++..-+ . -+-...-+.+..|.+.|++.++.|=
T Consensus 331 ---~dld~~~~t~~--~-l~~~a~wl~~~~i~~~i~~~~~~~l 367 (427)
T PF14356_consen 331 ---EDLDFDLDTKN--F-LLKTAAWLLHGRIRKAIEEKLVFDL 367 (427)
T ss_pred ---EeeEEEecccc--h-HHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 46777776532 1 1223344566777777777776553
No 307
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=36.03 E-value=22 Score=29.03 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=32.0
Q ss_pred hcCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHH
Q 009307 55 MLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAIC 90 (538)
Q Consensus 55 ~~~~~p~w~~~~~~E~~~WlN~~l~~~W~~~~~~~~ 90 (538)
-|++||+|+.-.|..-...++.+-.-+|.+..+++.
T Consensus 35 KLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 35 KLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred ecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 467999999999999999999999999998887775
No 308
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=35.40 E-value=21 Score=23.52 Aligned_cols=13 Identities=38% Similarity=1.081 Sum_probs=7.3
Q ss_pred HHhheeeeEEEec
Q 009307 21 LVIGYFLFIYFQP 33 (538)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (538)
++++++++.||++
T Consensus 26 ~vl~~~l~~~~rR 38 (40)
T PF08693_consen 26 IVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHhheEEec
Confidence 3445556666664
No 309
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=32.47 E-value=4.9e+02 Score=26.99 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=37.9
Q ss_pred CEEEEEEEeccC-----C-CCCcccEEEEEeCccCCCC-CC---eEEEEecccccccCCCCCCccccEEEEEEEEEe
Q 009307 324 QAVELAVYDWEQ-----V-GKHDKMGMNVVPLKELTPE-EP---SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (538)
Q Consensus 324 ~~L~i~v~d~~~-----~-~~d~~lG~~~i~l~~l~~~-~~---~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
..|+|.||.-.. + .+.++||.+.++|.---.. +. +.-|+.+-+... ..++....+||+.+.-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~---~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ---GSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC---CCCCCCcceEEEEEeccC
Confidence 579999998542 2 4567999999998732222 11 234555522110 011224568999887666
No 310
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=28.97 E-value=2.2e+02 Score=24.64 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEE-----------EecCCCCCCeEEEEEEEccc
Q 009307 420 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQF-----------MLEEPPTNDRLHVEVCSVSS 488 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w~e~f~f-----------~v~~~~~~~~l~v~V~d~~~ 488 (538)
|.++-..|-+.--..+.|.|..+++-|+.++|+-....---.++|.|.| .+.+.-..+.+.++++....
T Consensus 4 L~i~aVTCPGv~L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~ 83 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVP 83 (140)
T ss_pred EEEEEEecCCeEeCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeC
Q ss_pred CccCCCCCceeEEEEEechhhc
Q 009307 489 RIGLLHPKETLGYIDINLSDVV 510 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~l~~l~ 510 (538)
. ....|+..+-+++|++
T Consensus 84 ~-----~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 84 P-----AGEILAYYEENTRDFL 100 (140)
T ss_pred C-----CCcEEEEEeccccceE
No 311
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=26.50 E-value=4.6e+02 Score=23.32 Aligned_cols=96 Identities=14% Similarity=0.265 Sum_probs=57.3
Q ss_pred EEEEEeecCCccCCCCCCCCcEEEEEEcC--c-----cCC-eeeeeecCC-----CCCCeEecEEEEEeeCC--C-CCEE
Q 009307 263 HVKVVKAMNLKKKDLLGASDPYVKLKITE--D-----KLP-SKKTTVKHK-----NLNPEWNEEYNFTVRDP--E-SQAV 326 (538)
Q Consensus 263 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~-----~~~-~~~T~v~~~-----t~nP~w~e~f~f~v~~~--~-~~~L 326 (538)
.=.|.+|.+.. ..+-||+-.+.- . ... ...|.+... +..-.||.-|.+..... . -..|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 33566777543 346788887731 1 111 345555432 33457998777665532 2 2589
Q ss_pred EEEEEeccCCCCCcccEEEEEeCccCCCCCCeEEEEeccc
Q 009307 327 ELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (538)
Q Consensus 327 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
.++||..|..+++...|-..+.|-.- ++ .++...+.++
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~~-pG-~h~~~v~~wr 116 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPTQ-PG-RHEVEVPTWR 116 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCCC-Cc-eEEEEEEEEe
Confidence 99999999999999988766554222 22 3444444443
No 312
>PF15102 TMEM154: TMEM154 protein family
Probab=26.36 E-value=73 Score=27.69 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=5.3
Q ss_pred eeEEEecCCCCC
Q 009307 27 LFIYFQPTDVKN 38 (538)
Q Consensus 27 ~~~~~~~~~~~~ 38 (538)
+.++++++|.|+
T Consensus 78 lv~~~kRkr~K~ 89 (146)
T PF15102_consen 78 LVIYYKRKRTKQ 89 (146)
T ss_pred heeEEeecccCC
Confidence 334445444444
No 313
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.06 E-value=29 Score=37.88 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.8
Q ss_pred CCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009307 435 HTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 487 (538)
Q Consensus 435 ~~dpyv~v~~~~~~~-kT~v~~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
..+||+.+.+.-+.. .+.+.+.+..|.|++.|...+... ..+.|.|+.+.
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~---~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG---GAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC---CceEEEEEecC
Confidence 468999999876554 556677899999999999997653 46788887653
No 314
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.41 E-value=4.1e+02 Score=22.35 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=50.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCcEEEEEEcCccCCeeeeeecCCCCCCeE-ecEEEEEeeC--CCCCEEEEEEEeccC-C
Q 009307 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRD--PESQAVELAVYDWEQ-V 336 (538)
Q Consensus 261 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w-~e~f~f~v~~--~~~~~L~i~v~d~~~-~ 336 (538)
.|.++-+.-.++|.-+..+.+.||++++-++... ..|...... .... ...+.+.+.. +-...+.|.+|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v--~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKV--FSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEE--EETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccE--EEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 3445555556666665567889999999776543 111111111 1111 1223333321 114678899999873 3
Q ss_pred CCCcccEEEEEeCccCC
Q 009307 337 GKHDKMGMNVVPLKELT 353 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~ 353 (538)
..++.+.++.+.-.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 45667888888766666
No 315
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=22.75 E-value=19 Score=27.86 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=10.3
Q ss_pred hhhhccccchhhhhHHHhheeeeEEEe
Q 009307 6 TIFGFCGFGVGISSGLVIGYFLFIYFQ 32 (538)
Q Consensus 6 ~~~g~~g~~~~~~~~~~~~~~~~~~~~ 32 (538)
.++|+.+++++.++.+++..++|..|+
T Consensus 5 ~i~~iialiv~~iiaIvvW~iv~ieYr 31 (81)
T PF00558_consen 5 EILAIIALIVALIIAIVVWTIVYIEYR 31 (81)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655555544444455444
No 316
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=22.28 E-value=24 Score=37.98 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred CeeEEEEEEEeecCCccC--CC--CCCCCcEEEEEEcCccCCeeeeeecCCCCCCeEecEEEEEeeCCC-CCEEEEEEEe
Q 009307 258 PVGILHVKVVKAMNLKKK--DL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYD 332 (538)
Q Consensus 258 ~~g~L~V~v~~a~~L~~~--d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d 332 (538)
-.|..-.+++.|.+++.- +. .-+.+|++...++.+.. +|+.-..+.+|.|||. .+.+.+.+ ...|...+-+
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~f---rt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~ 353 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTF---RTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVG 353 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhh---hhhhhccccccccccc-ccccccchhhHHHhhhccc
Confidence 345555666777666431 11 12458999999987764 8999999999999997 55555433 2334444444
Q ss_pred ccCC
Q 009307 333 WEQV 336 (538)
Q Consensus 333 ~~~~ 336 (538)
++..
T Consensus 354 ~~~~ 357 (975)
T KOG2419|consen 354 YCEL 357 (975)
T ss_pred cccc
Confidence 4433
No 317
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=20.81 E-value=5.1e+02 Score=21.76 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=47.5
Q ss_pred EEEEeeecCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCcc-cceEEEEecCC-CCCCeEEEEEEEcccCccCCCCCce
Q 009307 422 VIVHEAQDVEGKHHTNPYARILFRGEER-KTKHVKKNRDPRW-EEEFQFMLEEP-PTNDRLHVEVCSVSSRIGLLHPKET 498 (538)
Q Consensus 422 v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w-~e~f~f~v~~~-~~~~~l~v~V~d~~~~~g~~~~d~~ 498 (538)
|.+...-++...+.+.||++++-++... .|...... .... ...+.+.+... +....+.|+++..+.. ...++.
T Consensus 11 I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~---~~~~~~ 86 (134)
T PF10409_consen 11 IILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSS---SMSKEK 86 (134)
T ss_dssp EEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETT---ECCCEE
T ss_pred EEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCc---ccccCe
Confidence 3333333332345679999999988776 33322211 1111 12233333311 1234688999987732 235678
Q ss_pred eEEEEEechhhc
Q 009307 499 LGYIDINLSDVV 510 (538)
Q Consensus 499 lG~~~i~l~~l~ 510 (538)
+.++.+.-.-+.
T Consensus 87 ~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 87 MFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEGGGSB
T ss_pred EEEEEEeeeeee
Confidence 999998877776
Done!