BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009308
         (538 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UQW|A Chain A, Crystal Structure Of Ylib Protein From Escherichia Coi
 pdb|1UQW|B Chain B, Crystal Structure Of Ylib Protein From Escherichia Coi
          Length = 509

 Score = 29.3 bits (64), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 20/114 (17%)

Query: 206 VISTFTVSATGITLFI-FRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYS 264
           +  ++TVS  GIT  +  R GI+F   T+       ++ AV   + +A+    HL     
Sbjct: 72  LAESYTVSDDGITYTVKLREGIKFQDGTDF------NAAAVKANLDRASDPANHLKR--- 122

Query: 265 SNQLYRN-------DQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGR 311
            + LY+N       D   V +  +  F  +++   +  P+T  ISP   EK G+
Sbjct: 123 -HNLYKNIAKTEAIDPTTVKITLKQPFSAFIN--ILAHPATAXISPAALEKYGK 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,527,070
Number of Sequences: 62578
Number of extensions: 548802
Number of successful extensions: 1115
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 4
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)