Query 009308
Match_columns 538
No_of_seqs 216 out of 1671
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 23:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 2.5E-28 8.5E-33 263.8 24.9 426 34-513 10-510 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 5E-26 1.7E-30 243.6 30.5 411 34-511 11-477 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.8 1.4E-18 4.7E-23 182.9 21.3 163 36-221 28-202 (451)
4 3o7q_A L-fucose-proton symport 99.8 2.3E-16 7.8E-21 165.4 27.1 147 36-201 26-172 (438)
5 4gc0_A D-xylose-proton symport 99.7 1E-15 3.5E-20 163.1 22.9 137 72-220 54-215 (491)
6 2gfp_A EMRD, multidrug resista 99.7 8E-16 2.7E-20 158.3 18.2 159 40-220 4-169 (375)
7 2cfq_A Lactose permease; trans 99.6 9E-15 3.1E-19 153.5 11.2 166 36-216 7-178 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.0 4.1E-09 1.4E-13 110.2 16.8 170 36-224 252-432 (451)
9 3o7q_A L-fucose-proton symport 98.9 2.4E-08 8.3E-13 104.0 16.1 162 36-221 258-428 (438)
10 2cfq_A Lactose permease; trans 98.7 1.3E-07 4.4E-12 98.7 12.8 167 36-223 220-397 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.5 2.5E-07 8.4E-12 98.1 10.6 174 39-225 286-471 (491)
12 4gc0_A D-xylose-proton symport 98.3 9.3E-06 3.2E-10 85.8 16.3 144 61-220 301-457 (491)
13 2gfp_A EMRD, multidrug resista 98.1 1.1E-06 3.7E-11 89.7 3.8 155 36-210 199-361 (375)
14 2xut_A Proton/peptide symporte 97.2 0.0022 7.5E-08 68.1 13.2 89 411-507 108-200 (524)
15 2ks1_B Epidermal growth factor 20.4 93 0.0032 20.9 3.2 20 493-512 23-42 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=2.5e-28 Score=263.82 Aligned_cols=426 Identities=13% Similarity=0.134 Sum_probs=272.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCC------CChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHH
Q 009308 34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRN------YNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVI 107 (538)
Q Consensus 34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g------~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i 107 (538)
.++.++.+....+++++++|++.+.++.|+++++ | .+..+++++.+.+.....++.+++|+++||++|||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTAL-LLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSC-SSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3466778889999999999999999999999989 9 99999999999999999999999999999944999999
Q ss_pred HHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhh
Q 009308 108 FYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWW 187 (538)
Q Consensus 108 ~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~ 187 (538)
.++.++..++.+++.++. .+.+.++++|++.|+|.|...|+..++++|++|+ ++|++....++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~ 153 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--------SNKSLAQKAFDMF 153 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--------TTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--------cchHHHHHHHHHH
Confidence 999999999998887764 0366889999999999999999999999999976 3444556677888
Q ss_pred HHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHHHHHhhccCC
Q 009308 188 LIPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLN 260 (538)
Q Consensus 188 y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~~a~~~~~~~ 260 (538)
+.+.++|..+++.+ .||++.|.+.++..+++.+.++..++++..++| +.++..+..+.+..+.++++.+
T Consensus 154 ~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 229 (524)
T 2xut_A 154 YFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP----EPKDPHGFLPVIRSALLTKVEG 229 (524)
T ss_dssp HHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------------------CTT
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC----CCccchhHHHHHHHHHhhhhcc
Confidence 99999999999876 589999999888877777666555444433333 2222222222222222211100
Q ss_pred CCCCCcccccccc-----CcccccCC-----------------ccccch--hhhcccccCCCCCCCcccccccccccccc
Q 009308 261 NPYSSNQLYRNDQ-----NQVHLFPQ-----------------VKFFRW--LDKAAIIEPSTTLISPEEQEKAGRLCTVA 316 (538)
Q Consensus 261 ~~~~~~~l~~~~~-----~~~~~~~~-----------------~~~~~~--l~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (538)
+.....+..... ........ .....| +++.+ ..+++.
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 290 (524)
T 2xut_A 230 -KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERAR------------------KSHPDA 290 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSC------------------CSCCSS
T ss_pred -cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhh------------------ccccHh
Confidence 000000000000 00000000 000001 11100 011222
Q ss_pred hhhHHHHHHhHHHHHhhhhhhHHhhccccchhhhhcccCCC---------------------c--c--------cCCCC-
Q 009308 317 QVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNP---------------------K--E--------AKKKG- 364 (538)
Q Consensus 317 ~ved~k~~l~~l~l~~~~~~f~~~~~Q~~s~~~~q~~~~~~---------------------P--d--------~~g~~- 364 (538)
+.++.|..++..+++....+++..+.|..+.+..+...++. | + |++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 33444555566667777777777777766655444322211 1 2 22222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcc
Q 009308 365 AKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEP 444 (538)
Q Consensus 365 s~~~ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~ 444 (538)
++.+++.+|+++.+++++..++.+..+ ......+.+|+++.+++.|+|+.+..|...+++.+.+|++
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 437 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTT-------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 445567788888777776554432110 0012457788999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh-ccc----ccccc-cCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009308 445 MHDCVSAITELVTGFASFVNIVSVY-FNK----SLFAD-TLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGG 513 (538)
Q Consensus 445 ~rg~~~gl~~l~~~iG~~l~~~l~~-~~~----~~~~~-~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~~ 513 (538)
+||.++|+++....+|+.+++.+.+ +.+ +|.++ +.+. ..+.|++.+++++++.+++++..+++++++
T Consensus 438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999998 443 13221 1111 123377788888888888887777665543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=5e-26 Score=243.57 Aligned_cols=411 Identities=11% Similarity=0.087 Sum_probs=273.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc-----CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHH
Q 009308 34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDY-----PRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIF 108 (538)
Q Consensus 34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~-----l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~ 108 (538)
.++.++.+....+++++++|++.+.++.|+++. + |.+..+++++.+.+..+..++.+++|+++||++|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDL-HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 457888999999999999999999999999987 9 9999999999999999999999999999999349999999
Q ss_pred HHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhH
Q 009308 109 YSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL 188 (538)
Q Consensus 109 ~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y 188 (538)
++.++..++.+++.++. +.+.++++|++.|+|.|...|+..++++|.+|+ ++| .+...+++++
T Consensus 90 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~-~r~~~~~~~~ 152 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPF--------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE--------HDR-RRDAGFSIFV 152 (491)
T ss_dssp HHHHHHHHHHHHHHSCC--------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--------CTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc--------ccc-cceeeehHHH
Confidence 99999999998887764 466889999999999999999999999999986 222 3556778888
Q ss_pred HHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHHH---------
Q 009308 189 IPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKA--------- 252 (538)
Q Consensus 189 ~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~~--------- 252 (538)
.+.++|..+++.+ .||++.|.+.++..+++++.+...++++..++.+.+.+.....+..+....
T Consensus 153 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 232 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFI 232 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHH
Confidence 9999999998876 689999999887777766665544333322111000011111111110000
Q ss_pred -----HHhhccCCCCCCCccccccccCcccccCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhH
Q 009308 253 -----ALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKM 327 (538)
Q Consensus 253 -----a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~ 327 (538)
....... +. .+ ...+.......... ......|+. .....++.++..+.
T Consensus 233 ~~~~~~~~~~~~---~~-----------------~~-~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~ 285 (491)
T 4aps_A 233 AIIVVMNLVGWN---SL-----------------PA-YINLLTIVAIAIPV-----FYFAWMISS-VKVTSTEHLRVVSY 285 (491)
T ss_dssp HHHHHHHHHSSC---CT-----------------TH-HHHHHHHHHHHHHH-----HHHHHHC-------------CTTH
T ss_pred HHHHHHHhccCc---cc-----------------cc-chhhhhHHHHHHHH-----HHHHHHhhc-ccccHHHHHHHHHH
Confidence 0000000 00 00 00000000000000 000000000 00111334455566
Q ss_pred HHHHhhhhhhHHhhccccchhhhhc---ccCC---C---------------c------ccCCCC--CchhHHHHHHHHHH
Q 009308 328 VPIWTTFVVFGLIVSTGQTFFPEQG---NQLN---P---------------K------EAKKKG--AKIVRIWAGMVLST 378 (538)
Q Consensus 328 l~l~~~~~~f~~~~~Q~~s~~~~q~---~~~~---~---------------P------d~~g~~--s~~~ri~iG~~l~~ 378 (538)
.+++....+++..+.|..+.+..+. ...+ . | ||.+++ ....++.+|+++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~ 365 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAG 365 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 6777777788888877766543322 1222 0 1 554432 44567778888888
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHH
Q 009308 379 ICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTG 458 (538)
Q Consensus 379 l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~ 458 (538)
+++++..+..... + ...+.+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|++.....
T Consensus 366 ~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 366 LSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8877666543210 0 01246788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009308 459 FASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTR 511 (538)
Q Consensus 459 iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~ 511 (538)
+|..+++.+.+ +.+ ......|+.+++++++..+++++..++.++
T Consensus 433 ~g~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 433 VGSALNAQLVTLYNA---------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHGGGGGG---------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 332 123345777788888877777776665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.80 E-value=1.4e-18 Score=182.91 Aligned_cols=163 Identities=7% Similarity=-0.068 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308 36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI 115 (538)
Q Consensus 36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~ 115 (538)
+.++.+....+...+..+.+...++.+.++ + .+..+.+++.+.+.....++.+++|+++||+ |||+++.++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G--FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 445666666777777766556666555543 4 6788999999999999999999999999995 99999999999999
Q ss_pred HhHHHHHh----hhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHH
Q 009308 116 LGLVLLFI----TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPF 191 (538)
Q Consensus 116 ~G~~ll~~----~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ 191 (538)
++.++..+ +. +.+.++++|++.|+|.|...+...++++|.+|+ + ++.+.++++..+.
T Consensus 104 ~~~~~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~---~r~~~~~~~~~~~ 164 (451)
T 1pw4_A 104 AVMLFMGFVPWATS--------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------K---ERGGIVSVWNCAH 164 (451)
T ss_dssp HHHHHHHHCHHHHS--------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT--------T---HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccc--------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc--------h---hhhHHHHHHHHHH
Confidence 99998887 54 456889999999999999999999999999876 2 3456777888888
Q ss_pred HHHHHHHHHh-------hh-hhHHHHHHHHHHHHHHHH
Q 009308 192 FFSVIASVQL-------SS-WRVISTFTVSATGITLFI 221 (538)
Q Consensus 192 niG~~i~~~~-------~g-~~~~F~i~~~~~~l~~~~ 221 (538)
++|.++++.+ .| |++.|.+.++..++..++
T Consensus 165 ~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 165 NVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 202 (451)
T ss_dssp HHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 8988888765 56 999999877766554443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.75 E-value=2.3e-16 Score=165.39 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308 36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI 115 (538)
Q Consensus 36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~ 115 (538)
+.+..+....++.-+.+. ....+.+++.+++ |.+..+.+++.+.+.....++.++.|+++||+ |||+++.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANN-LNDILLPQFQQAF-TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHH
Confidence 344444555555655555 4555556677789 99999999999999999999999999999995 99999999999999
Q ss_pred HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308 116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV 195 (538)
Q Consensus 116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~ 195 (538)
++.++....... .+.+.++++|++.|+|.|...+...++++|.+|+ + ++....+++..+.++|.
T Consensus 103 ~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 103 LGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE--------S---SGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--------T---THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc-----ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc--------h---hHHHHHHHHHHHHHHHH
Confidence 999888332211 1578899999999999999999999999999876 2 33455678888999999
Q ss_pred HHHHHh
Q 009308 196 IASVQL 201 (538)
Q Consensus 196 ~i~~~~ 201 (538)
++++.+
T Consensus 167 ~~g~~~ 172 (438)
T 3o7q_A 167 IIAVVF 172 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.70 E-value=1e-15 Score=163.14 Aligned_cols=137 Identities=9% Similarity=-0.015 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccc----------ccchhHHHHHHH
Q 009308 72 VVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA----------ASPLLKRLILIG 141 (538)
Q Consensus 72 ~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~----------~~~~~~~~~~~~ 141 (538)
..+.+++.+.+..+..++++++|+++||+ |||+++.++.+++.+|.++.+++..... ....+.+.++++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 45667888889999999999999999995 9999999999999999988774321000 001257899999
Q ss_pred HHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh---------------hhhhH
Q 009308 142 VVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL---------------SSWRV 206 (538)
Q Consensus 142 l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~---------------~g~~~ 206 (538)
|++.|+|.|+..+..+++++|..|+ ++ |......+..+.++|.+++..+ .+|++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~--------~~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPA--------HI---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCG--------GG---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCH--------Hh---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 9999999999999999999999876 33 3445566677788888777654 25777
Q ss_pred HHHHHHHHHHHHHH
Q 009308 207 ISTFTVSATGITLF 220 (538)
Q Consensus 207 ~F~i~~~~~~l~~~ 220 (538)
.+.+..+..++.++
T Consensus 202 ~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 202 MFASECIPALLFLM 215 (491)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhh
Confidence 77665555444333
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.68 E-value=8e-16 Score=158.28 Aligned_cols=159 Identities=12% Similarity=0.124 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHH
Q 009308 40 ILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLV 119 (538)
Q Consensus 40 ~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ 119 (538)
++....++..++.....+.++. +.+++ |.+.++.+++.+.+.....++.++.|+++||+ |||+++.++.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDL-NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTS-SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 3445566666676655555555 45569 99999999999999999999999999999995 999999999999999998
Q ss_pred HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308 120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV 199 (538)
Q Consensus 120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~ 199 (538)
+...+. +.+.++++|++.|++.+...+...+++.|.+|+ +++.+.++++..+.++|..+++
T Consensus 81 ~~~~~~--------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 81 VAVTTS--------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-----------TQLRHANSLLNMGILVSPLLAP 141 (375)
T ss_dssp HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------SSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-----------HHHHHHHHHHHHHHHHHHHhhH
Confidence 888764 577899999999999999999999999999876 2345667788888899999888
Q ss_pred Hh-------hhhhHHHHHHHHHHHHHHH
Q 009308 200 QL-------SSWRVISTFTVSATGITLF 220 (538)
Q Consensus 200 ~~-------~g~~~~F~i~~~~~~l~~~ 220 (538)
.+ .||+..|.+.++..++..+
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 142 LIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 76 5899999887666655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.55 E-value=9e-15 Score=153.52 Aligned_cols=166 Identities=10% Similarity=0.010 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308 36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI 115 (538)
Q Consensus 36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~ 115 (538)
|.++.+....++..+++..+.+.++.|+++++ |.+..+++.+.+.+.....++.+++|+++||+ ||||++.++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN-HISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTT-CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 55666666667777777778889999999889 99999999999999999999999999999995 99999999998877
Q ss_pred HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308 116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV 195 (538)
Q Consensus 116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~ 195 (538)
++...+......+ .-...+..++.+.+++.|...+...+...+..++ .+ | ++...++......++|.
T Consensus 85 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~--~-~~~~~~g~~~~~~~~g~ 151 (417)
T 2cfq_A 85 VMFAPFFIFIFGP----LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK------VS--R-RSNFEFGRARMFGCVGW 151 (417)
T ss_dssp SCHHHHHHHTHHH----HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH------HH--H-HHTCCHHHHSSSTTTHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------hh--h-hcccchHHHHHHHHHHH
Confidence 6432222111000 0000123455566666665555555555444332 01 1 12222333334455566
Q ss_pred HHHHHh------hhhhHHHHHHHHHHH
Q 009308 196 IASVQL------SSWRVISTFTVSATG 216 (538)
Q Consensus 196 ~i~~~~------~g~~~~F~i~~~~~~ 216 (538)
.+++.+ .+|+..|++.++..+
T Consensus 152 ~~~~~l~~~l~~~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 152 ALGASIVGIMFTINNQFVFWLGSGCAL 178 (417)
T ss_dssp HHHHHHHHHHHHHCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 555544 578888877655433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.02 E-value=4.1e-09 Score=110.20 Aligned_cols=170 Identities=8% Similarity=0.082 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CchHHHHHHHHH
Q 009308 36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFS--GRLNVIFYSTIS 113 (538)
Q Consensus 36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~l--Gr~~~i~~~~~~ 113 (538)
+.++.+....++..++++++...++.|+++.+ |.+..+++.+.+.+.....++.++.|+++|| + |||+.+.++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK-HFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 66777888888888999999999999999889 9999999999999999999999999999999 6 999998888877
Q ss_pred HH-HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308 114 CI-LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF 192 (538)
Q Consensus 114 ~~-~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n 192 (538)
.. ++.+++..... .+.+.+.+..++.|++.++..+...++..|.+|+ +.+...++.+....+
T Consensus 330 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 330 LVTIATIVYWMNPA------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-----------KAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHHHTTSCCT------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-----------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-----------hhhhhHHHHHHHHHH
Confidence 76 66655544321 1355677788889999999999889999999876 235567778788888
Q ss_pred H-HHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHh
Q 009308 193 F-SVIASVQL-------SSWRVISTFTVSATGITLFIFRL 224 (538)
Q Consensus 193 i-G~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~ 224 (538)
+ |..+++.+ .||+..|.+.+++.+++.++++.
T Consensus 393 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 8 88888765 58888998877777766665443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.88 E-value=2.4e-08 Score=103.98 Aligned_cols=162 Identities=9% Similarity=-0.067 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-hcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308 36 KAALILLGLIFSHKLVDIAVVAVLITY-LTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC 114 (538)
Q Consensus 36 ~~~~~l~~~~~~er~~~~g~~~~l~~y-l~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~ 114 (538)
+.++......++...+++++...++.| +++.+ |.+..+++.+.+.+.....++.+++|+++|| +|||+++.++.++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP-GMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA 335 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 456666667777778888888999999 99999 9999999999999999999999999999999 59999999999999
Q ss_pred HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308 115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS 194 (538)
Q Consensus 115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG 194 (538)
.++.+++.... +. ...+..++.+++.+...|...++..|.+|+ + +.. ...+. ...++|
T Consensus 336 ~~~~~~~~~~~--------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~----~~~---~~~~~-~~~~~g 393 (438)
T 3o7q_A 336 MALCLISAFAG--------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-----D----TKY---GSSFI-VMTIIG 393 (438)
T ss_dssp HHHHHHHHHCC--------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGG-----G----HHH---HHHHH-HHTTHH
T ss_pred HHHHHHHHHcC--------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----c----ccc---hhhHH-HHHHHH
Confidence 88877766553 22 234455788999999999999998998875 1 211 11222 234466
Q ss_pred HHHHHHh-------hh-hhHHHHHHHHHHHHHHHH
Q 009308 195 VIASVQL-------SS-WRVISTFTVSATGITLFI 221 (538)
Q Consensus 195 ~~i~~~~-------~g-~~~~F~i~~~~~~l~~~~ 221 (538)
..+++.+ .| ++..|.+++++.++..+.
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6666654 56 888888776655544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.65 E-value=1.3e-07 Score=98.71 Aligned_cols=167 Identities=10% Similarity=-0.023 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCC---ChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308 36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNY---NVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI 112 (538)
Q Consensus 36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~---s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~ 112 (538)
+.++......++....++.....++.|+.+.+ +. +....+...+.......++.+++|+++||+ |||+++..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~ 297 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF-ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGT 297 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHH
Confidence 33433333333334455555556777887655 42 233445556666666778899999999995 99999999988
Q ss_pred HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh-hHHHH
Q 009308 113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW-WLIPF 191 (538)
Q Consensus 113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~-~y~~~ 191 (538)
+..++.+++.... +.+.+++..++.+++.+...+...++.+|.+|+ + .+...+.+ +..+.
T Consensus 298 ~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~---~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 298 IMSVRIIGSSFAT--------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV--------R---FSATIYLVCFCFFK 358 (417)
T ss_dssp HHHHHHHHHTTCC--------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH--------H---HHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------H---HHHHHHHHHHHHHH
Confidence 8888766655432 244566666777888777777778899999876 2 23333444 24455
Q ss_pred HHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH
Q 009308 192 FFSVIASVQL-------SSWRVISTFTVSATGITLFIFR 223 (538)
Q Consensus 192 niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~ 223 (538)
++|..+++.+ .||...|.+.++..+++.++.+
T Consensus 359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 6777777665 4677778777776666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.52 E-value=2.5e-07 Score=98.12 Aligned_cols=174 Identities=9% Similarity=0.011 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHH-----HHHHH
Q 009308 39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIF-----YSTIS 113 (538)
Q Consensus 39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~-----~~~~~ 113 (538)
+.++...++....+......++.|..+.+ +.+..+++.+.........++.++.|++.||+ |||+... ++.++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERV-DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSC-CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHh-ccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34444555556677777888888998877 77767788888888888888999999999995 9876544 77777
Q ss_pred HHHhHHHHHhhhcccc-ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308 114 CILGLVLLFITAFEEA-ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF 192 (538)
Q Consensus 114 ~~~G~~ll~~~~~~~~-~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n 192 (538)
..++.+++........ ....+.+.+.++.++.++|.+...|...++..|.+|+ +.+....+.+....+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-----------~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-----------AFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-----------TCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHH
Confidence 7777666555321100 0111355677888899999999999999999999886 234566778888899
Q ss_pred HHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHhc
Q 009308 193 FSVIASVQL------SSWRVISTFTVSATGITLFIFRLG 225 (538)
Q Consensus 193 iG~~i~~~~------~g~~~~F~i~~~~~~l~~~~~~~~ 225 (538)
+|..+++.+ .++...|.+.++..+++.++++..
T Consensus 433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 356677777666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.31 E-value=9.3e-06 Score=85.78 Aligned_cols=144 Identities=9% Similarity=0.002 Sum_probs=90.2
Q ss_pred HHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHH
Q 009308 61 TYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILI 140 (538)
Q Consensus 61 ~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~ 140 (538)
.++.+.. +.+..+.............++.++++++.||+ |||+.+..+.....++.+.+........ ........+
T Consensus 301 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ 376 (491)
T 4gc0_A 301 PEVFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIVALLSM 376 (491)
T ss_dssp HHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHH
T ss_pred hHHHHhc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc--chHHHHHHH
Confidence 4444557 77788887777777888899999999999995 9999999999988888776654432111 011112222
Q ss_pred HHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------------hhhhHH
Q 009308 141 GVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------------SSWRVI 207 (538)
Q Consensus 141 ~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------------~g~~~~ 207 (538)
..+..+.+. +..|....+.+|.+|. + .|....++.....++|.++++.+ .++...
T Consensus 377 ~~~~~~~~~-~~~~~~~~~~~E~fPt--------~---~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~ 444 (491)
T 4gc0_A 377 LFYVAAFAM-SWGPVCWVLLSEIFPN--------A---IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS 444 (491)
T ss_dssp HHHHHHHHT-TTTHHHHHHHHHSSCT--------T---THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHh-HHHHHHHHHHHHhCCH--------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 222222222 2346667899999987 1 33455566566666777666443 234455
Q ss_pred HHHHHHHHHHHHH
Q 009308 208 STFTVSATGITLF 220 (538)
Q Consensus 208 F~i~~~~~~l~~~ 220 (538)
|.+.+++.+++.+
T Consensus 445 ~~i~~~~~~~~~i 457 (491)
T 4gc0_A 445 YWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6665555554444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.12 E-value=1.1e-06 Score=89.66 Aligned_cols=155 Identities=10% Similarity=-0.041 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH-H
Q 009308 36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS-C 114 (538)
Q Consensus 36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~-~ 114 (538)
|.++.+....++..++++++...++.|+++.+ |.+..+++.+.........++.++.|+++||+ || + +..+... .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~ 274 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-GLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCL 274 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHH
Confidence 55666777778888888888888888998888 99999999999999999999999999999995 77 2 3333333 3
Q ss_pred HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308 115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS 194 (538)
Q Consensus 115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG 194 (538)
..+..++...... ..+.+.+++..++.+++.|...+...++..|.+|+ ++.+..+.+....++|
T Consensus 275 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~------------~~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 275 LAGLLMWIPDWFG----VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF------------LAGTAGALVGGLQNIG 338 (375)
T ss_dssp HTSSSSSHHHHHH----HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc------------ccchHHHHHHHHHHHH
Confidence 3333221211100 01355667788889999999999999999998753 3456667777888888
Q ss_pred HHHHHHh-------hhhhHHHHH
Q 009308 195 VIASVQL-------SSWRVISTF 210 (538)
Q Consensus 195 ~~i~~~~-------~g~~~~F~i 210 (538)
..+++.+ .+|...+.+
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 339 SGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHH
Confidence 8888766 345555544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.23 E-value=0.0022 Score=68.08 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=67.1
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHH---HHHHHHHHHHHHHHhhh-cccccccccCCCcchhH
Q 009308 411 SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAI---TELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDE 486 (538)
Q Consensus 411 s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl---~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~ 486 (538)
+.++++...++.|+|+....|...+++.+..|++.|+..++. +.....+|..+++.+.+ +.+ .. ....
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-----~~---g~~~ 179 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK-----NF---GAAV 179 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH-----TS---CHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc---cHHH
Confidence 566677778999999999999999999999999999887777 88999999999999988 432 01 1233
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 009308 487 YYKMLTIVSFINICYFWWIST 507 (538)
Q Consensus 487 ~f~~la~l~~v~~~~~~~~~~ 507 (538)
.|++.+++.++..+++++..+
T Consensus 180 ~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 180 AFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp HHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456666666665555544333
No 15
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.40 E-value=93 Score=20.90 Aligned_cols=20 Identities=0% Similarity=-0.059 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhcccccC
Q 009308 493 IVSFINICYFWWISTFYTRG 512 (538)
Q Consensus 493 ~l~~v~~~~~~~~~~~~~~~ 512 (538)
++.++.+++++++.|+.+++
T Consensus 23 ~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 23 LLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHHhhhhHhhc
Confidence 34444455555555554444
Done!