Query 009309
Match_columns 538
No_of_seqs 214 out of 1556
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 22:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 2E-140 4E-145 1118.7 45.0 443 79-522 1-443 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 2E-133 4E-138 1078.2 41.1 399 112-515 4-406 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 1E-131 3E-136 1041.1 42.0 398 112-513 3-400 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 2E-130 3E-135 1026.6 37.1 382 116-514 1-382 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 7E-121 2E-125 949.5 38.7 366 112-490 2-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 2E-117 4E-122 924.5 38.4 364 112-490 2-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 5E-115 1E-119 894.9 35.4 337 112-489 2-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 2E-107 3E-112 851.4 34.5 350 112-514 16-367 (375)
9 COG0108 RibB 3,4-dihydroxy-2-b 100.0 8.3E-78 1.8E-82 576.8 22.2 201 112-316 2-202 (203)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 5.3E-75 1.1E-79 566.9 22.6 202 112-316 13-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 2.3E-74 5E-79 561.1 23.1 201 112-315 12-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 1.1E-72 2.4E-77 553.2 23.3 200 114-316 19-218 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 3.3E-72 7.1E-77 541.9 22.1 197 113-312 2-199 (199)
14 KOG1284 Bifunctional GTP cyclo 100.0 4E-73 8.7E-78 575.6 14.5 339 67-405 16-357 (357)
15 PF00926 DHBP_synthase: 3,4-di 100.0 2.2E-72 4.8E-77 541.6 16.9 194 116-312 1-194 (194)
16 PRK03353 ribB 3,4-dihydroxy-2- 100.0 5.6E-68 1.2E-72 519.0 22.9 202 112-316 12-213 (217)
17 PRK05773 3,4-dihydroxy-2-butan 100.0 1.5E-67 3.2E-72 515.5 21.0 193 115-312 2-217 (219)
18 COG0807 RibA GTP cyclohydrolas 100.0 6.8E-67 1.5E-71 501.9 18.3 192 318-512 2-193 (193)
19 PRK00393 ribA GTP cyclohydrola 100.0 1.6E-58 3.5E-63 446.4 18.0 196 318-515 2-197 (197)
20 TIGR00505 ribA GTP cyclohydrol 100.0 1.2E-57 2.5E-62 438.4 17.9 191 320-512 1-191 (191)
21 PF00925 GTP_cyclohydro2: GTP 100.0 4.7E-57 1E-61 426.5 12.5 169 319-489 1-169 (169)
22 cd00641 GTP_cyclohydro2 GTP cy 100.0 9.5E-55 2.1E-59 418.5 17.7 193 318-512 1-193 (193)
23 PRK07198 hypothetical protein; 100.0 2.3E-40 5E-45 343.9 12.9 168 334-506 210-394 (418)
24 KOG1284 Bifunctional GTP cyclo 99.6 1.5E-16 3.3E-21 163.4 1.4 160 358-522 155-329 (357)
25 KOG3009 Predicted carbohydrate 85.6 2.4 5.2E-05 47.1 7.4 161 117-307 30-205 (614)
26 TIGR02361 dak_ATP dihydroxyace 69.1 14 0.0003 42.3 7.5 88 337-461 33-125 (574)
27 PRK14481 dihydroxyacetone kina 65.2 26 0.00057 37.6 8.1 87 338-462 36-127 (331)
28 PF06794 UPF0270: Uncharacteri 59.0 3.6 7.9E-05 34.6 0.4 41 96-136 18-59 (70)
29 TIGR02363 dhaK1 dihydroxyaceto 58.3 30 0.00064 37.2 7.1 89 337-462 35-128 (329)
30 PRK14479 dihydroxyacetone kina 56.7 32 0.00068 39.5 7.4 87 337-461 34-125 (568)
31 PRK11468 dihydroxyacetone kina 54.5 55 0.0012 35.5 8.4 88 338-462 35-127 (356)
32 PF02733 Dak1: Dak1 domain; I 53.5 14 0.00031 39.4 3.8 86 338-461 20-110 (325)
33 PF13344 Hydrolase_6: Haloacid 49.5 4.5 9.7E-05 35.4 -0.6 50 452-504 23-77 (101)
34 PRK14483 DhaKLM operon coactiv 49.4 53 0.0012 35.3 7.2 86 338-461 35-125 (329)
35 TIGR02362 dhaK1b probable dihy 46.7 72 0.0016 34.3 7.7 87 338-462 33-124 (326)
36 PRK04966 hypothetical protein; 46.6 12 0.00027 31.7 1.6 22 115-136 38-59 (72)
37 PTZ00375 dihydroxyacetone kina 45.8 57 0.0012 37.6 7.2 87 337-461 37-128 (584)
38 PF13263 PHP_C: PHP-associated 43.7 20 0.00043 28.2 2.3 20 289-308 5-24 (56)
39 PRK08296 hypothetical protein; 42.2 22 0.00049 40.9 3.4 83 125-208 511-599 (603)
40 TIGR02990 ectoine_eutA ectoine 41.9 67 0.0015 32.7 6.4 91 386-491 58-156 (239)
41 PF00107 ADH_zinc_N: Zinc-bind 40.3 16 0.00034 31.9 1.4 34 448-482 3-36 (130)
42 PRK00304 hypothetical protein; 39.1 33 0.00072 29.4 3.1 21 115-135 37-57 (75)
43 PF13420 Acetyltransf_4: Acety 38.6 64 0.0014 28.7 5.1 36 453-488 103-141 (155)
44 PRK05878 pyruvate phosphate di 38.0 1.6E+02 0.0034 33.7 9.1 114 143-269 382-510 (530)
45 PLN02880 tyrosine decarboxylas 37.8 65 0.0014 36.0 6.0 52 251-302 221-272 (490)
46 KOG2426 Dihydroxyacetone kinas 33.5 2.3E+02 0.0049 32.4 9.1 98 331-466 31-133 (582)
47 COG3473 Maleate cis-trans isom 33.3 38 0.00081 34.6 2.9 57 453-509 111-178 (238)
48 PF00332 Glyco_hydro_17: Glyco 32.7 34 0.00073 36.1 2.7 36 453-488 20-55 (310)
49 PLN02590 probable tyrosine dec 31.6 96 0.0021 35.3 6.2 52 251-302 269-320 (539)
50 COG1560 HtrB Lauroyl/myristoyl 30.4 1.2E+02 0.0025 32.3 6.2 92 114-225 182-276 (308)
51 KOG1145 Mitochondrial translat 30.1 83 0.0018 36.4 5.2 50 253-304 209-258 (683)
52 COG1926 Predicted phosphoribos 28.7 1.2E+02 0.0026 31.0 5.6 58 116-173 106-185 (220)
53 PRK06354 pyruvate kinase; Prov 24.5 1.2E+02 0.0026 35.1 5.4 82 125-207 494-581 (590)
54 COG0223 Fmt Methionyl-tRNA for 23.8 1E+02 0.0023 32.8 4.4 130 258-395 13-173 (307)
55 cd06450 DOPA_deC_like DOPA dec 23.1 2E+02 0.0044 29.2 6.3 47 257-303 136-182 (345)
56 PF04472 DUF552: Protein of un 23.0 82 0.0018 26.0 2.8 24 112-136 8-31 (73)
57 cd03109 DTBS Dethiobiotin synt 22.7 2E+02 0.0043 26.1 5.5 51 253-305 82-132 (134)
58 COG0532 InfB Translation initi 22.0 1.5E+02 0.0032 33.8 5.4 52 250-305 60-113 (509)
59 PF08369 PCP_red: Proto-chloro 20.9 1.2E+02 0.0026 23.3 3.1 23 288-310 21-43 (45)
60 PLN02398 hydroxyacylglutathion 20.2 1.1E+03 0.024 25.3 12.2 140 250-410 102-246 (329)
61 PRK06464 phosphoenolpyruvate s 20.1 1.2E+02 0.0026 36.2 4.4 87 125-213 368-465 (795)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=1.9e-140 Score=1118.67 Aligned_cols=443 Identities=78% Similarity=1.233 Sum_probs=433.1
Q ss_pred CCCCccccccccCcccccccccCCCCCCCCCCCCCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHH
Q 009309 79 VSAPFGTVDAEITPETIDFFVSDAEGDPDCPTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFM 158 (538)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm 158 (538)
++++||||+++|+|++++||.++.+.+++.+++.|++|++||++||+|+||||+||++||||||||+|||.+|+|.||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm 80 (450)
T PLN02831 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL 80 (450)
T ss_pred CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence 47899999999999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCC
Q 009309 159 VKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGH 238 (538)
Q Consensus 159 ~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGH 238 (538)
++|++|+||+||++++|++|+||+|++...|.+..+++|||||||++|++|||||.|||+|||+||+|.++|+||++|||
T Consensus 81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH 160 (450)
T PLN02831 81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH 160 (450)
T ss_pred HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence 99999999999999999999999999865677788899999999999999999999999999999999999999999999
Q ss_pred CccceeccCCccccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccch
Q 009309 239 VFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETI 318 (538)
Q Consensus 239 VfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~l 318 (538)
||||++++|||++|+|||||||||||||||.|+||||||++++||+||+++++.+||++|+||+++|+|||+||+++|++
T Consensus 161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l 240 (450)
T PLN02831 161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240 (450)
T ss_pred ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999658999999999999999999999999999999999999
Q ss_pred hhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcC
Q 009309 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAG 398 (538)
Q Consensus 319 Verv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G 398 (538)
|+++++.+|||.||.|++++|++..++.||+||++|++..++||||||||+|+|||+|||.+|||+|||++||++|+++|
T Consensus 241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G 320 (450)
T PLN02831 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAG 320 (450)
T ss_pred ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCccccccccc
Q 009309 399 KGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKG 478 (538)
Q Consensus 399 ~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g 478 (538)
+|||||||+|||||+||.+|+++|.+|++|+||++||..+|++.|.|+||+|| |||++|||++||||||||.|+.+|++
T Consensus 321 ~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigA-qIL~dLGI~~irLLTNNp~K~~~L~~ 399 (450)
T PLN02831 321 RGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGA-QILRDLGVRTMRLMTNNPAKYTGLKG 399 (450)
T ss_pred CEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHH-HHHHHcCCCEEEECCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCChhHHHHHHHHhhhcCCccCCCCCCCccC
Q 009309 479 YGLAVIGRVPILTPITEENKRYLETKRTKMGHIYGSDLQGPLFG 522 (538)
Q Consensus 479 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~~~~~~~~~~~ 522 (538)
|||+|++++|++++++++|++||+||++||||++..++.+++++
T Consensus 400 ~GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~ 443 (450)
T PLN02831 400 YGLAVVGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSG 443 (450)
T ss_pred CCCEEEEEecccCCCChhhHHHHHHHHHHhCCcCCCCCCCcccc
Confidence 99999999999999999999999999999999999999888765
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=2.1e-133 Score=1078.17 Aligned_cols=399 Identities=53% Similarity=0.929 Sum_probs=390.4
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.|++|++||++||+|+||||+||++||||||||+|||.+|++.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 4 ~~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~ 81 (555)
T PRK09319 4 EFDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTD 81 (555)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCCCceEEeeecc--CCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCC
Q 009309 192 SSAPTFTITVDAK--FGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLN 269 (538)
Q Consensus 192 ~~~taFtVsVDa~--~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~ 269 (538)
.+.|+|||||||+ .|++|||||.|||+|||+||+|+++|.||++|||||||++++|||++|+||||||||||||||+.
T Consensus 82 ~~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~ 161 (555)
T PRK09319 82 SNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLY 161 (555)
T ss_pred CCCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCC
Confidence 8889999999987 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEE
Q 009309 270 PVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHV 349 (538)
Q Consensus 270 Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHl 349 (538)
|+||||||+++ ||+||+++++++||++|+||+|+|+|||+||+++|++|+++++++|||.||.|++++|++..++.||+
T Consensus 162 PaaVicEi~~~-dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHv 240 (555)
T PRK09319 162 PAGVICEIQNP-DGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHV 240 (555)
T ss_pred ceEEEEEEecC-CCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEE
Confidence 99999999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCC--CCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhHhhhhccc
Q 009309 350 AVVKGNMGN--GQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQ 427 (538)
Q Consensus 350 ALv~Gdi~~--~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~ 427 (538)
|||+|++.. ++||||||||+|+|||+|||.+|||++||++||++|+++|+||||||| ||||||||.+|+++|+||++
T Consensus 241 ALvkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~ 319 (555)
T PRK09319 241 ALVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDG 319 (555)
T ss_pred EEEcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhc
Confidence 999999963 479999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhh
Q 009309 428 GHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTK 507 (538)
Q Consensus 428 G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k 507 (538)
|+||++||..+|++.|.|+||+|| |||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++|
T Consensus 320 G~DTveAn~~lG~~~D~RdYgigA-QIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k 398 (555)
T PRK09319 320 GLDTVEANERLGFPADLRNYGVGA-QILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEK 398 (555)
T ss_pred CCChhhhhhhcCCcccceehhHHH-HHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCC
Q 009309 508 MGHIYGSD 515 (538)
Q Consensus 508 ~gH~~~~~ 515 (538)
|||++..+
T Consensus 399 ~gH~l~~~ 406 (555)
T PRK09319 399 LGHLLLQT 406 (555)
T ss_pred hCCccCCC
Confidence 99999754
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.5e-131 Score=1041.09 Aligned_cols=398 Identities=59% Similarity=0.977 Sum_probs=391.4
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.|++|++||++||+|+||||+||++||||||||+|||.+|+|.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 3 ~~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~ 80 (402)
T PRK09311 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQD 80 (402)
T ss_pred ccchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999887 788
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.++|+||||||++.|++|||||.|||+|||+||+|+++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 81 ~~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Pa 160 (402)
T PRK09311 81 SHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPA 160 (402)
T ss_pred CCCCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (538)
||||||+++ ||+||+++++++||++|+||+++++|||+||+++|.+|+++++.+|||.||.|++++|++..++.||+||
T Consensus 161 avi~ei~~~-~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~AL 239 (402)
T PRK09311 161 GVICEIVNE-DGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVAL 239 (402)
T ss_pred EEEEEEecC-CCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcc
Q 009309 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDT 431 (538)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DT 431 (538)
|+|++..++||||||||+|+|||+|||.+|||++||++||++|+++|+||||||++|||||+||.+|+++|.+|++|+||
T Consensus 240 v~Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt 319 (402)
T PRK09311 240 VKGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDT 319 (402)
T ss_pred EeCCCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCCh
Confidence 99999988999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred hhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhhcCCc
Q 009309 432 VQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTKMGHI 511 (538)
Q Consensus 432 veAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~ 511 (538)
++||..+|++.|.|+||+|| |||++|||++||||||||+|+.+|++|||+|++++|++++++++|++||+||++||||+
T Consensus 320 ~~an~~lg~~~D~Rdyg~ga-qIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK~~~~gH~ 398 (402)
T PRK09311 320 VDANLKLGFPADARDYGIGA-QILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGHD 398 (402)
T ss_pred hhhhhhcCCCccceehhHHH-HHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccCCCCChhhHHHHHHHHHhccCC
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009309 512 YG 513 (538)
Q Consensus 512 ~~ 513 (538)
+.
T Consensus 399 l~ 400 (402)
T PRK09311 399 LD 400 (402)
T ss_pred CC
Confidence 86
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.5e-130 Score=1026.63 Aligned_cols=382 Identities=40% Similarity=0.664 Sum_probs=368.9
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCC
Q 009309 116 IEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAP 195 (538)
Q Consensus 116 Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~t 195 (538)
+++||++||+|+||||+|+ +||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+. |. .+|
T Consensus 1 ~~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~---~~--~~~ 74 (387)
T PRK09318 1 MEELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPS---NG--GET 74 (387)
T ss_pred CHHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccC---CC--CCC
Confidence 3789999999999999997 89999999999999999999999999999999999999999999999984 32 458
Q ss_pred ceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCeEEEE
Q 009309 196 TFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLS 275 (538)
Q Consensus 196 aFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Paavi~ 275 (538)
+|||||||+ ++|||||+|||+|||+||+ .++|.||+||||||||.+. ||++|+||||||||||+|||+.|+||||
T Consensus 75 aftvsvd~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vic 149 (387)
T PRK09318 75 NFFIPVDYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIV 149 (387)
T ss_pred CEEEEEcCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEE
Confidence 999999996 4599999999999999999 6789999999999999875 7999999999999999999999999999
Q ss_pred EecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEEEEcc
Q 009309 276 AVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGN 355 (538)
Q Consensus 276 eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gd 355 (538)
|||++ ||+||+++++++||++|+||+++|+|||+||+++|++|+++++++|||.||.|++++|++..++.||+|||+|+
T Consensus 150 ei~~~-dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~ 228 (387)
T PRK09318 150 EILDE-KGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEP 228 (387)
T ss_pred EEecC-CCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCC
Confidence 99998 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcchhhh
Q 009309 356 MGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQAN 435 (538)
Q Consensus 356 i~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTveAn 435 (538)
+. +||||||||+|+|||+|||.+|||++||+.||++|+++| ||||||+ |||||+||.+|+++|.+|++|+||++||
T Consensus 229 ~~--~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eAn 304 (387)
T PRK09318 229 LG--EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEAN 304 (387)
T ss_pred CC--CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhhh
Confidence 85 489999999999999999999999999999999999999 9999998 9999999999999999999999999999
Q ss_pred hhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhhcCCccCC
Q 009309 436 IELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTKMGHIYGS 514 (538)
Q Consensus 436 ~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~~~ 514 (538)
..+|++.|.|+||+|| |||++|||++||||||||+|+.+|++|||+|++++|++++++++|++||+||++||||++..
T Consensus 305 ~~lg~~~D~RdygigA-qIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~tK~~k~gH~l~~ 382 (387)
T PRK09318 305 RALGFKEDERDYAAAF-QILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGHKLEL 382 (387)
T ss_pred hhcCCCccceeeeHHH-HHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHHHHHHhhCCCcCc
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999863
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=7.1e-121 Score=949.47 Aligned_cols=366 Identities=39% Similarity=0.650 Sum_probs=350.1
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.|++|++||++|++|+||||+||++||||||||+||+.+|||.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~ 79 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGS 79 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.++|+|||||||+.|++|||||.|||+|||+||+|+++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~ 159 (369)
T PRK12485 80 VFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPA 159 (369)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (538)
+||||||++ ||+||+++++.+||++|+||+|+|+|||+||+++|++|+++++++|||.||.|++++|++..++.||+||
T Consensus 160 avi~ei~~~-dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvAL 238 (369)
T PRK12485 160 SVIVEVMND-DGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAM 238 (369)
T ss_pred EEEEEEecC-CCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcceEEEcccCccccccCCCCC-CChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhHhhhhcccCCc
Q 009309 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARC-DCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHD 430 (538)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~C-DCg~qL~~Al~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~D 430 (538)
++|++..++||||||||+|+|||+|||.+| ||+|||+.||++|+++|+|||||||+|+ +++||.+|+++|..|+.|++
T Consensus 239 v~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~-~~~gl~~kl~a~~~~~~~~~ 317 (369)
T PRK12485 239 VMGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHE-SSQALLERIPQLTQPPRQYQ 317 (369)
T ss_pred EeCCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCC-chhhHHHHHHHHHhHhhCCC
Confidence 999998889999999999999999999865 9999999999999999999999999554 56999999999987776665
Q ss_pred chhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecC
Q 009309 431 TVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPIL 490 (538)
Q Consensus 431 TveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~ 490 (538)
..+ ..|.|+||+|| ||||+|||+||||| |||.|+.+|++|||+|++++|+.
T Consensus 318 ~~d-------~r~~r~ygigA-qILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 318 RSQ-------SRIYSEVGTGA-QILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred ccc-------chhhhhhhHHH-HHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 421 23577999999 99999999999999 77999999999999999999975
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.9e-117 Score=924.51 Aligned_cols=364 Identities=44% Similarity=0.715 Sum_probs=354.7
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.|++|++||++||+|+||||+||++||||||||+|||.+|+|.|+||++|++|+||+||++++|++|+||+|++. |.+
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~ 79 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGT 79 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999986 778
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.++++||||||+++|++|||||.|||+|||.||+++++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 80 ~~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Pa 159 (367)
T PRK14019 80 QYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPA 159 (367)
T ss_pred cCCCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCce
Confidence 88899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (538)
+|+|||+++ +|+||+++++++||++|+||+|+|+||++||++++++|++++++++||.||+|++++|++..++.||+||
T Consensus 160 avi~ei~~~-~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Al 238 (367)
T PRK14019 160 AVICEIMKD-DGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLAL 238 (367)
T ss_pred EEEEEEecC-CCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcc
Q 009309 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDT 431 (538)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DT 431 (538)
++|++..++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||+ ||||||||.+|+++|
T Consensus 239 v~Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~~--------- 308 (367)
T PRK14019 239 VKGTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRAE--------- 308 (367)
T ss_pred EeCCcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhhh---------
Confidence 9999988889999999999999999999999999999999999999999999998 999999999999863
Q ss_pred hhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecC
Q 009309 432 VQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPIL 490 (538)
Q Consensus 432 veAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~ 490 (538)
++||..+|++.|.|+||+|| ||||+|||++||||| ||.|+++|++|||+|++++|+.
T Consensus 309 ~~an~~lg~~~d~R~y~iga-qIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 309 EAAAALKRRPVDYRTYGIGA-QILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred hhhhhhcCCCcccceehHHH-HHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 56899999999999999999 999999999999999 7999999999999999999975
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=5.1e-115 Score=894.88 Aligned_cols=337 Identities=34% Similarity=0.624 Sum_probs=323.7
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.|++|++||++|++|+||||+||++||||||||+||+.+|||.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~ 79 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTS 79 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.++|+|||||||+ +++|||||+|||+|||+||+|+++|+||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus 80 ~~~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~ 158 (339)
T PRK09314 80 NHETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPV 158 (339)
T ss_pred CCCCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCce
Confidence 8899999999998 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (538)
|||||||++ ||+||+++++++||++|+||+++|+|||+||+++|++|+++++++|||.||+|++++|++. ++.||+||
T Consensus 159 ~vicEil~~-dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlAL 236 (339)
T PRK09314 159 AVICEIMKE-DGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAF 236 (339)
T ss_pred EEEEEEecC-CCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999988 89999999
Q ss_pred EEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcc
Q 009309 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDT 431 (538)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DT 431 (538)
|+|++.. +|||||||+|+|||+|++. |.+||+.||++|+++| ||||||| ||||+
T Consensus 237 v~G~~~~--~vlVRVHSec~tgd~l~~~---~~~qL~~Al~~I~~eG-GvlvYLr-qegr~------------------- 290 (339)
T PRK09314 237 KFGEIKL--TPNVKFHKIGSDFELLTSD---KFSELLKAIEYLKKNG-GVLIFLN-TESKE------------------- 290 (339)
T ss_pred EeCCCCC--CccEEEeccCChHHhhCCC---cHHHHHHHHHHHHHcC-CEEEEEc-CCCCC-------------------
Confidence 9999964 8999999999999999854 4599999999999999 9999999 99884
Q ss_pred hhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCC-cccccccccCCcEEEEEeec
Q 009309 432 VQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNN-PAKFIGLKGYGLAVIGRVPI 489 (538)
Q Consensus 432 veAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNN-P~K~~aL~g~GIeV~ervpl 489 (538)
+| +.|+||+|| |||++|||++||||||| |+|+.+|++|||+|++++.+
T Consensus 291 --an-------~~Rdygiga-qIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 291 --NN-------QVKDYGIGA-QILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred --cc-------cccchhHHH-HHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEeC
Confidence 12 489999999 99999999999999999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1.6e-107 Score=851.35 Aligned_cols=350 Identities=31% Similarity=0.478 Sum_probs=330.9
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
++.+|++||++||+|+||||+||++|| |||+|||.+|++.||||++|++|++|++|++++|++|+||+|.
T Consensus 16 ~~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~------- 85 (375)
T PRK08815 16 AAIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ------- 85 (375)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-------
Confidence 467899999999999999999999996 9999999999999999999999999999999999999999992
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.||++|. || ++|||+||+.++++ .|.||++|||||| ||||||||||||.|+
T Consensus 86 ----~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Pa 136 (375)
T PRK08815 86 ----GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPA 136 (375)
T ss_pred ----CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCce
Confidence 1333332 33 37999999999999 6899999999997 999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHh-hccchhhccccccccCCc-eeEEEEEEEeCCCCceEE
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRR-KRETIVERTAISRLPTKW-GLFQAYCYRSKLDGTDHV 349 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~-~~E~lVerv~~~~LpT~~-G~F~~~~Yr~~~dg~EHl 349 (538)
||||||+++ ++ + +|| +||+++|+|||+||. ++|++|++++++++||.| |+|++++|++..++.+|+
T Consensus 137 avi~Ei~~~-~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~ 204 (375)
T PRK08815 137 MVAVPLPVH-DE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQV 204 (375)
T ss_pred EEEEEEccC-CC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEE
Confidence 999999996 32 2 777 999999999999998 889999999999999995 999999999999999999
Q ss_pred EEEEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhHhhhhcccCC
Q 009309 350 AVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGH 429 (538)
Q Consensus 350 ALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~ 429 (538)
|||+|++..++||||||||+|+|||+|||.+|||+|||++||++|+++|+||||||+ |||||+|+.+|+++|.+|++|+
T Consensus 205 ALv~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~ 283 (375)
T PRK08815 205 AIVVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGL 283 (375)
T ss_pred EEEeCCCCCCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccC
Confidence 999999988899999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred cchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhhcC
Q 009309 430 DTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTKMG 509 (538)
Q Consensus 430 DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~g 509 (538)
||++||..+|++.|.|+||+|| |||++|||++||||||||+|+.+|++|||+|++++|++++.+++|++||+||++|||
T Consensus 284 dt~~a~~~lg~~~D~RdygigA-QIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~n~~yl~tK~~~~g 362 (375)
T PRK08815 284 DTIDADAQLGFGPDERRYGSAV-AMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAENERYLRTKADRAG 362 (375)
T ss_pred CchhhhhhcCCCccceeeeHHH-HHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhhhHHHHHHHHhC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCC
Q 009309 510 HIYGS 514 (538)
Q Consensus 510 H~~~~ 514 (538)
|+++.
T Consensus 363 h~l~~ 367 (375)
T PRK08815 363 HALDV 367 (375)
T ss_pred CCcCc
Confidence 99864
No 9
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=8.3e-78 Score=576.79 Aligned_cols=201 Identities=51% Similarity=0.873 Sum_probs=197.1
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.+.+|++||+|||+|+||||+||++||||||||+||+.+|||.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~ 79 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTD 79 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.++|+|||||||++ |+|||||.|||.|||.|+++++.|+||++|||||||+|++||||+|+|||||+|||||||||+|+
T Consensus 80 ~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa 158 (203)
T COG0108 80 AHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPA 158 (203)
T ss_pred CCCCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCc
Confidence 99999999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhcc
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E 316 (538)
+||||||++ ||+||+.+++++||++||||+++|+|||+||+++|
T Consensus 159 ~VicEi~~~-dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 159 GVICEIMND-DGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEEEeCC-CccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 999999998 99999999999999999999999999999998866
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=5.3e-75 Score=566.88 Aligned_cols=202 Identities=39% Similarity=0.739 Sum_probs=197.4
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.|++|++||++||+|+||||+||++||||||||+||+.+|+|.||||+||++|+||+||++++|++|+||+|+.. |++
T Consensus 13 ~~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 90 (218)
T PRK00910 13 PITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNS 90 (218)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999976 888
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.++|+||||||+++|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus 91 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 170 (218)
T PRK00910 91 ANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPA 170 (218)
T ss_pred CCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhcc
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E 316 (538)
+||||||++ ||+||+++++++||++|+||+|+|+|||+||+++|
T Consensus 171 ~vicEil~~-dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 171 GVLCELTNP-DGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEEEecC-CCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 999999998 89999999999999999999999999999998877
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.3e-74 Score=561.06 Aligned_cols=201 Identities=39% Similarity=0.668 Sum_probs=196.1
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.+++|++||++|++|+||||+||++||||||||+||+.+|+|.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 12 ~~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 89 (214)
T PRK01792 12 AEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTS 89 (214)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 788
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
.++|+|||||||++|++|||||.|||+|||+||+|+++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 90 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 169 (214)
T PRK01792 90 VNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEA 169 (214)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhc
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKR 315 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~ 315 (538)
+||||||++ ||+||+++++++||++|+||+++|+|||+||+++
T Consensus 170 ~vicEil~~-dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 170 GVICEITND-DGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEEEecC-CCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 999999998 8999999999999999999999999999999764
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.1e-72 Score=553.15 Aligned_cols=200 Identities=39% Similarity=0.611 Sum_probs=195.4
Q ss_pred ccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCC
Q 009309 114 SSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSS 193 (538)
Q Consensus 114 ~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~ 193 (538)
++|++||++|++|+||||+||++||||||||++|+++|+|.||||+||++|+||+||++++|++|+||+|++. |.+.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999987 88888
Q ss_pred CCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCeEE
Q 009309 194 APTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSV 273 (538)
Q Consensus 194 ~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Paav 273 (538)
+++||||||+++|++|||||.|||+|||+||+++++|+||++|||||||++++|||++|+||||||||||+|||+.|++|
T Consensus 97 ~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 97 STAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhcc
Q 009309 274 LSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (538)
Q Consensus 274 i~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E 316 (538)
|||||++ ||+||+++++++||++|+||+++|+|||+|++++.
T Consensus 177 icEil~~-dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~ 218 (230)
T PRK00014 177 LCELMNA-DGTMMRGASLERYAAKEGLVALAIDELAAHLQARG 218 (230)
T ss_pred EEEEeCC-CCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHh
Confidence 9999998 89999999999999999999999999999997654
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=3.3e-72 Score=541.92 Aligned_cols=197 Identities=44% Similarity=0.738 Sum_probs=191.1
Q ss_pred CccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCC
Q 009309 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDS 192 (538)
Q Consensus 113 ~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~ 192 (538)
|++|++||++||+|+||||+||++||||||||+||+.+|+|.||||++|++|+||+||++++|++|+||+|++. |++.
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~ 79 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSA 79 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred CCCceEEeeeccCC-CccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 193 SAPTFTITVDAKFG-TTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 193 ~~taFtVsVDa~~g-ttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
++|+||+|||+.++ ++|||||+|||+|||+|+++.++|+||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus 80 ~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~ 159 (199)
T TIGR00506 80 SGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPA 159 (199)
T ss_pred CCCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCce
Confidence 89998888887666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHH
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYR 312 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr 312 (538)
+||||||++ ||+||+++++++||++|+||+++|+|||+||
T Consensus 160 ~vicEil~~-dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 160 GVICEMMND-DGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEEeCC-CCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 999999998 9999999999999999999999999999996
No 14
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4e-73 Score=575.64 Aligned_cols=339 Identities=46% Similarity=0.651 Sum_probs=327.7
Q ss_pred CCCCCccccccCCCCCccccccccCc-ccccccccCCCCCCCCCCCCCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEE
Q 009309 67 ENGSLLGDFDESVSAPFGTVDAEITP-ETIDFFVSDAEGDPDCPTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVM 145 (538)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~ 145 (538)
.|++.+.....|+..+|+|+.++|.| ..+.|++.|+|++|++|+..|.+|+++|+.+|.|++|+|+||++|||||||++
T Consensus 16 ~~~~~~p~~~r~~i~s~~~~~s~~~p~~~d~~~~~d~e~~~~~~~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~ 95 (357)
T KOG1284|consen 16 TNEVSKPLESRPDIDSTYTVNSRIDPFPMDWGAATDEEGGPDRLPRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLII 95 (357)
T ss_pred cccccCcccccCccccccccccccCCccccccccccccCCCCCcccceechhhhhhcccCCcEEEEEecccccCCCCcce
Confidence 45556667778999999999999999 77788999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCCceEEeeeccCCCccCCChhhHHHHHHHHcC
Q 009309 146 AASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSS 225 (538)
Q Consensus 146 aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAd 225 (538)
+|...++++++|+++|++|++|+.|..+.+.+|-||+|+....+.+...++|||+||+++|++||||++||+.|++.|++
T Consensus 96 a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~s 175 (357)
T KOG1284|consen 96 AAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSAHDEAYTGETLAS 175 (357)
T ss_pred ecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEEecccccchhhcc
Confidence 99999999999999999999999999999999999999997667888999999999999999999999999999999999
Q ss_pred -CCCCCCCccCCCCCccceec-cCCccccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEE
Q 009309 226 -PDSKPENFRRPGHVFPLKYR-NGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPIS 303 (538)
Q Consensus 226 -p~s~p~Df~rPGHVfPL~a~-~GGvl~R~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~iv 303 (538)
..+.|+||.+|||++|++++ +|||++|.|||||+||||.++|+.|.++|||++++++|.|+++++++.||++|++|++
T Consensus 176 ~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~ 255 (357)
T KOG1284|consen 176 ARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPLI 255 (357)
T ss_pred cccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHhhhhHhhcCChh
Confidence 46789999999999999999 6999999999999999999999999999999999889999999999999999999999
Q ss_pred eehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCC
Q 009309 304 SIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDC 383 (538)
Q Consensus 304 si~DLi~yr~~~E~lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDC 383 (538)
+++|+++|+.+|..+|+++..+++||+|+.|..+||++..++.||++.++|.+..+..++||+|++|+++|+||+.+|+|
T Consensus 256 ~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~ 335 (357)
T KOG1284|consen 256 SIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTKIEVRGHLECLPDDIFGNRKRTG 335 (357)
T ss_pred hhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechhhhheeehhcccchhcCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCEEEEEE
Q 009309 384 GNQLDLAMQIIEKAGKGVVVYL 405 (538)
Q Consensus 384 g~qL~~Al~~I~~~G~GVlVYL 405 (538)
+.||+-+|++|+++|+|+++||
T Consensus 336 ~sq~~~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 336 GSQLNYFMRTIEAAGRGVFVAL 357 (357)
T ss_pred ccHHHHHHHHHHhhcceeEEeC
Confidence 9999999999999999999997
No 15
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=2.2e-72 Score=541.65 Aligned_cols=194 Identities=54% Similarity=0.895 Sum_probs=180.3
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCC
Q 009309 116 IEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAP 195 (538)
Q Consensus 116 Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~t 195 (538)
|++||++|++|+||||+||++||||||||++|+.+|++.||||+||++|+||+||++++|++|+||+|++. |++.+++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~ 78 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGT 78 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS-
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999996 8888999
Q ss_pred ceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCeEEEE
Q 009309 196 TFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLS 275 (538)
Q Consensus 196 aFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Paavi~ 275 (538)
+|||||||+.|++|||||.|||+|||+||+++++|+||++|||||||++++|||++|+||||||||||+|||++|++|||
T Consensus 79 ~ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ 158 (194)
T PF00926_consen 79 AFTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVIC 158 (194)
T ss_dssp -BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEE
T ss_pred CeeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHH
Q 009309 276 AVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYR 312 (538)
Q Consensus 276 eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr 312 (538)
|||++ ||+||+++++++||++|+||+|+|+|||+||
T Consensus 159 eil~~-dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 159 EILDD-DGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp EBBET-TSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EEeCC-CCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 99998 9999999999999999999999999999997
No 16
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=5.6e-68 Score=519.05 Aligned_cols=202 Identities=43% Similarity=0.755 Sum_probs=197.3
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (538)
.+.+|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|+||++|++++|++|+||+|++. |++
T Consensus 12 ~~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~ 89 (217)
T PRK03353 12 PFERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTS 89 (217)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009309 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (538)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVdLarlAGl~Pa 271 (538)
..+++||||||++.|++|||||+|||+|||.|+++.++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 90 ~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~ 169 (217)
T PRK03353 90 QYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPA 169 (217)
T ss_pred CCCCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCce
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhcc
Q 009309 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (538)
Q Consensus 272 avi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E 316 (538)
+||||||++ +|+|++++++++||++|+||+|+++|||+||+++|
T Consensus 170 avi~ei~~~-~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 170 GVLCELTND-DGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEEeecC-CCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 999999998 89999999999999999999999999999998876
No 17
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=1.5e-67 Score=515.51 Aligned_cols=193 Identities=27% Similarity=0.379 Sum_probs=179.7
Q ss_pred cHHHHHHHHHCCCEEEEEeCCCCCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCC------
Q 009309 115 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAE------ 188 (538)
Q Consensus 115 ~Ie~Ai~alr~G~~VvV~Dde~rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~------ 188 (538)
+|++||++||+|+||||+||++||||||||+||+++|+|+||||++|++|+||+||++++|++|+||+|++...
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ---CCCCC--CCceEEeeeccCCCccCCChhhHHHHHHHHcCC--------CC----CCCCccCCCCCccceeccCCccc
Q 009309 189 ---NEDSS--APTFTITVDAKFGTTTGVSASDRAKTVLALSSP--------DS----KPENFRRPGHVFPLKYRNGGVLR 251 (538)
Q Consensus 189 ---n~~~~--~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp--------~s----~p~Df~rPGHVfPL~a~~GGvl~ 251 (538)
|++.+ +++|||||||+ |++|||||.|||+|||+||++ ++ +|+||++|||||||+++ ||++
T Consensus 82 ~~~~~~~~~~~taFtvsVd~~-~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~ 158 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWVNHV-KTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRE 158 (219)
T ss_pred cccccCCCCCCceEEEEEcCC-CCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--cccc
Confidence 33444 47999999985 999999999999999999983 22 38999999999999998 8999
Q ss_pred cCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHH
Q 009309 252 RAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYR 312 (538)
Q Consensus 252 R~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr 312 (538)
|+||||||||||||||+.|++||||||++ + .||+++++++||++||||+|+|+|||+|.
T Consensus 159 R~GHTEasvdLa~lAGl~P~~vicEil~~-~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 159 RRGHTELSIALAQAAGLEPSAVIAEMLDE-K-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCChhHHHHHHHHHcCCCccEEEEEEeCC-C-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 99999999999999999999999999996 4 59999999999999999999999999875
No 18
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=6.8e-67 Score=501.87 Aligned_cols=192 Identities=58% Similarity=1.038 Sum_probs=188.7
Q ss_pred hhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHc
Q 009309 318 IVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKA 397 (538)
Q Consensus 318 lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~ 397 (538)
.++++++++|||.||.|++++|++..++.+|+|+|+|++.. +||||||||+|+|||+|||.+|||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccc
Q 009309 398 GKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLK 477 (538)
Q Consensus 398 G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~ 477 (538)
|+||||||| |||||+||.+|++||+|||+|.||++||.++|++.|+|+||+|| |||+||||++||||||||+|+.+|.
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigA-qIL~dLGI~~irLLtnnp~K~~~l~ 158 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGA-QILKDLGIKKIRLLTNNPRKIYGLE 158 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHH-HHHHHcCCcEEEEecCChHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCcEEEEEeecCCCCChhHHHHHHHHhhhcCCcc
Q 009309 478 GYGLAVIGRVPILTPITEENKRYLETKRTKMGHIY 512 (538)
Q Consensus 478 g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~ 512 (538)
+|||+|++|+|++...+++|+.||+||++||||++
T Consensus 159 ~~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 159 GFGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred hCCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999985
No 19
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=1.6e-58 Score=446.35 Aligned_cols=196 Identities=49% Similarity=0.851 Sum_probs=188.9
Q ss_pred hhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHc
Q 009309 318 IVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKA 397 (538)
Q Consensus 318 lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~ 397 (538)
.|+++++.++||.||.|++++|++..++.+|+|||+|++.++.|||||||++|.++|+|++.+|||++||++||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 48899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccc
Q 009309 398 GKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLK 477 (538)
Q Consensus 398 G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~ 477 (538)
|+||||||+ |+|||.|+.+|+++|.+|+.|.|++++|..+|++.|.|+||+|| |||++|||++||||||||.|+.+|.
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGA-QIL~dLGV~~mrLLtn~~~k~~~L~ 159 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAA-DMLKALGVKKVRLLTNNPKKVEALT 159 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHH-HHHHHcCCCEEEECCCCHHHHHHHH
Confidence 999999998 89999999999999999998889998988889999999999999 9999999999999999999999999
Q ss_pred cCCcEEEEEeecCCCCChhHHHHHHHHhhhcCCccCCC
Q 009309 478 GYGLAVIGRVPILTPITEENKRYLETKRTKMGHIYGSD 515 (538)
Q Consensus 478 g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~~~~ 515 (538)
||||+|++++|++++.+++|++||.||++||||.+..|
T Consensus 160 g~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~~ 197 (197)
T PRK00393 160 EAGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSLD 197 (197)
T ss_pred hCCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCCC
Confidence 99999999999988999999999999999999998753
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=1.2e-57 Score=438.37 Aligned_cols=191 Identities=53% Similarity=0.892 Sum_probs=184.9
Q ss_pred hccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 009309 320 ERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGK 399 (538)
Q Consensus 320 erv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~ 399 (538)
|++++.++||.||.|++++|++..++.+|+|||+|++.+++|||||||++|.++|+|++.+|||++||++||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 57889999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccC
Q 009309 400 GVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGY 479 (538)
Q Consensus 400 GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~ 479 (538)
||||||+ |+++|+|+.+|+++|++|+.|.+|+++|..+|.+.|.|+||+|| |||++|||++||||||||.|+.+|+||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGA-QIL~dLGV~~~rLLtn~~~k~~~L~g~ 158 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCA-DILEDLGVKKVRLLTNNPKKIEILKKA 158 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHH-HHHHHcCCCEEEECCCCHHHHHHHHhC
Confidence 9999999 99999999999999999998899999998999999999999999 999999999999999999999999999
Q ss_pred CcEEEEEeecCCCCChhHHHHHHHHhhhcCCcc
Q 009309 480 GLAVIGRVPILTPITEENKRYLETKRTKMGHIY 512 (538)
Q Consensus 480 GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~ 512 (538)
||+|++++|++...+++|.+||.||++||||.+
T Consensus 159 gleVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 159 GINIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CCEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 999999999888889999999999999999975
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=4.7e-57 Score=426.50 Aligned_cols=169 Identities=63% Similarity=1.086 Sum_probs=137.9
Q ss_pred hhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHcC
Q 009309 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAG 398 (538)
Q Consensus 319 Verv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G 398 (538)
|||++++++||.||+|++++|++..++.+|+|||+|++..++||||||||+|+++|+||+.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCccccccccc
Q 009309 399 KGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKG 478 (538)
Q Consensus 399 ~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g 478 (538)
+||||||+ ||+||+|+.+|+++|++|++|.||++||..+|++.|.|+||+|| |||+||||++||||||||+|+.+|+|
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygiga-qIL~dLGV~~~rLLtnnp~k~~~L~g 158 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGA-QILRDLGVKKMRLLTNNPRKYVALEG 158 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHH-HHHHHTT--SEEEE-S-HHHHHHHHH
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHH-HHHHHcCCCEEEECCCChhHHHHHhc
Confidence 99999997 99999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCcEEEEEeec
Q 009309 479 YGLAVIGRVPI 489 (538)
Q Consensus 479 ~GIeV~ervpl 489 (538)
|||+|+++||+
T Consensus 159 ~gleV~~~vp~ 169 (169)
T PF00925_consen 159 FGLEVVERVPL 169 (169)
T ss_dssp TT--EEEEE--
T ss_pred CCCEEEEEecC
Confidence 99999999996
No 22
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=9.5e-55 Score=418.48 Aligned_cols=193 Identities=59% Similarity=1.006 Sum_probs=185.0
Q ss_pred hhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHHHc
Q 009309 318 IVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKA 397 (538)
Q Consensus 318 lVerv~~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~ 397 (538)
+|+++++.++||.||.|++++|++..++.+|+|||+|++.+++|||||||++|.++|+|++.+|||++||++||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccc
Q 009309 398 GKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLK 477 (538)
Q Consensus 398 G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~ 477 (538)
|+||||||+ |++++.|+.+|+++|.+|+.+.++.+++..++++.|.|+||+|| |||++|||++||||||||.|+.+|.
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGA-QIL~dLGv~~mrLLs~~~~k~~~L~ 158 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAA-QILRDLGIKSVRLLTNNPDKIDALE 158 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHH-HHHHHcCCCeEEECCCCHHHHHHHH
Confidence 999999998 89999999999999999888888887877788899999999999 9999999999999999999999999
Q ss_pred cCCcEEEEEeecCCCCChhHHHHHHHHhhhcCCcc
Q 009309 478 GYGLAVIGRVPILTPITEENKRYLETKRTKMGHIY 512 (538)
Q Consensus 478 g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~ 512 (538)
||||+|++++|++.+.+++|++||.+|++||+|++
T Consensus 159 gfglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 159 GYGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred hCCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 99999999999888889999999999999999985
No 23
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=2.3e-40 Score=343.85 Aligned_cols=168 Identities=29% Similarity=0.516 Sum_probs=146.9
Q ss_pred EEEEEEEeCCCCceEEEEEEccCCC----CCcceEEEcccCccccccCCCCCCChHHH----HHHHHHHHHcCCEEEEEE
Q 009309 334 FQAYCYRSKLDGTDHVAVVKGNMGN----GQDVLVRVHSECLTGDIFGSARCDCGNQL----DLAMQIIEKAGKGVVVYL 405 (538)
Q Consensus 334 F~~~~Yr~~~dg~EHlALv~Gdi~~----~~~vLVRVHSeCltgDvfgS~~CDCg~qL----~~Al~~I~~~G~GVlVYL 405 (538)
-++++|+....+.+|+ ++|+++. ..|+||||||+|++||+|||.+|||+.|| +.||++|+++|+||||||
T Consensus 210 ~~~~vf~p~~gg~~~~--i~G~p~~~~d~~~PVLVRVHSeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYL 287 (418)
T PRK07198 210 PDLEVFLPPIGGQTVY--IFGDVTDLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYN 287 (418)
T ss_pred cceEEEcCCCCCeeEE--EECCcccccCCCCCceEEEeccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3578899999999954 8999854 56899999999999999999999999885 688999999999999999
Q ss_pred eCCCCCCcchHHHhHhhhhccc--CCcchhhh-----hhcCCccccchhhHhHHHHHHHcCCCee-eeccCCcccccccc
Q 009309 406 RGHEGRGIGLGHKLRAYNLQDQ--GHDTVQAN-----IELGLAVDAREYGIGAQQILRDLGVRTM-RLMTNNPAKFIGLK 477 (538)
Q Consensus 406 r~qEGRGiGL~~Kl~ay~lQd~--G~DTveAn-----~~lG~~~D~RdYgigA~QILrdLGV~kI-rLLTNNP~K~~aL~ 477 (538)
+ ||||++||.+|+++|++|+. |.||+++| ..+|+ .|.|+||+|| |||++|||+|| |||||||+|+.+|.
T Consensus 288 r-QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~-~D~RdyGlGA-QILrdLGV~Km~RLLTNnp~K~~gL~ 364 (418)
T PRK07198 288 R-KEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGV-QDMRFQELMP-DVLHWLGIRRIHRLVSMSNMKYDAIT 364 (418)
T ss_pred C-CCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCC-CcceehhHHH-HHHHHhCCChhhhhcCCCHHHHHHHH
Confidence 8 99999999999999999853 79999975 23444 5999999999 99999999999 99999999999999
Q ss_pred cCCcEEEEEeecCCCCChhHHH-HHHHHhh
Q 009309 478 GYGLAVIGRVPILTPITEENKR-YLETKRT 506 (538)
Q Consensus 478 g~GIeV~ervpl~~~~~~~n~~-YL~tK~~ 506 (538)
+|||+|++++|++...+++..+ =+.+|..
T Consensus 365 GfGLEVVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 365 GSGIEVGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred hCCCEEEEEeccCcCCCccccccchhhhhh
Confidence 9999999999998888877543 3444444
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.60 E-value=1.5e-16 Score=163.37 Aligned_cols=160 Identities=28% Similarity=0.376 Sum_probs=136.2
Q ss_pred CCCcceEEEcccCccccccCCCCCCChHHHHHHHHHHH---H-cCCEEEEEEeCCCCCCcchHHHhHhhhhcccCCcchh
Q 009309 358 NGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIE---K-AGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQ 433 (538)
Q Consensus 358 ~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~Al~~I~---~-~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd~G~DTve 433 (538)
.+..+.||.|++|.|+..++|.+|+|+.|++.+=..|. + .| |||.|++ |+++|++|..++++|++|..|.++++
T Consensus 155 ~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl~~l~elv~q 232 (357)
T KOG1284|consen 155 HGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPLGVLGELVVQ 232 (357)
T ss_pred cCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCchhhhhhhhhc
Confidence 45789999999999999999999999999999888876 6 47 9999996 99999999999999999999999999
Q ss_pred hhhhcCCccccchhhHhHHHHHHHcCCCeeeeccCCcccccccccCC--cEEEEEeecCCC----C-----ChhHHHHHH
Q 009309 434 ANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYG--LAVIGRVPILTP----I-----TEENKRYLE 502 (538)
Q Consensus 434 An~~lG~~~D~RdYgigA~QILrdLGV~kIrLLTNNP~K~~aL~g~G--IeV~ervpl~~~----~-----~~~n~~YL~ 502 (538)
++..+-+++|.|.|+..- .|+-+++..-+|+++|||+|+......- ...++|+++... . ...-.-|+.
T Consensus 233 ~~g~m~~lpd~r~fa~~~-~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~ 311 (357)
T KOG1284|consen 233 ADGSMARLPDCRSFAAEH-AIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLG 311 (357)
T ss_pred CCcccccCccHhhhhHhh-cCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeec
Confidence 999999999999999987 9999999999999999999998887765 445677764421 1 112256999
Q ss_pred HHhhhcCCccCCCCCCCccC
Q 009309 503 TKRTKMGHIYGSDLQGPLFG 522 (538)
Q Consensus 503 tK~~k~gH~~~~~~~~~~~~ 522 (538)
+|.++|||... +++.+.+
T Consensus 312 ~kie~r~h~e~--l~~~i~~ 329 (357)
T KOG1284|consen 312 TKIEVRGHLEC--LPDDIFG 329 (357)
T ss_pred hhhhheeehhc--ccchhcC
Confidence 99999999974 4444444
No 25
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=85.61 E-value=2.4 Score=47.14 Aligned_cols=161 Identities=22% Similarity=0.276 Sum_probs=99.8
Q ss_pred HHHHHHHHCCCEEEEEeCCCCCcceeEEEE-----cCCCCHHHHHHHH----------HhCCceEEeecCHHHHHhcCCC
Q 009309 117 EQALNTLRQGKFVIVVEDENGDVEGNLVMA-----ASLTSPRHVAFMV----------KHGSGIVSVGMKEEDLQRLNLP 181 (538)
Q Consensus 117 e~Ai~alr~G~~VvV~Dde~rEnEgdLV~a-----Ae~~T~e~vaFm~----------r~~~Glicvam~~~~~~rL~Lp 181 (538)
.+.-+||++|+|||.... -++.- --..|+-.+.-.+ .-..|.+|+-++++.+.+|++.
T Consensus 30 pqv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~ 102 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASS 102 (614)
T ss_pred HHHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhc
Confidence 477899999999998643 22221 1112222233333 3346999999999999999876
Q ss_pred CCCCCCCCCCCCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHH
Q 009309 182 LMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVD 261 (538)
Q Consensus 182 ~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GHTEAaVd 261 (538)
.-+-. .-.+..-++++.+-.. |-||+- .|+- +|.. ..-.=|..||- |||-+=+-|+--+-.
T Consensus 103 g~~~~--kvsrRD~~~v~i~rlv-ggTtva------aTm~-iA~~-~gI~vfaTggi--------ggvhr~An~smdisa 163 (614)
T KOG3009|consen 103 GPSAV--KVSRRDIASVVIVRLV-GGTTVA------ATMI-IAHA-AGIVVFATGGI--------GGVHRGANQSMDISA 163 (614)
T ss_pred Ccccc--ccccccccccceeeec-CCcchh------hhhh-hccc-ceEEEEecCCc--------chhhhccccccchhh
Confidence 53111 1233446788888766 444432 2221 1111 11234777776 777544444544333
Q ss_pred HHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehh
Q 009309 262 LLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIID 307 (538)
Q Consensus 262 LarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~D 307 (538)
+.--.|-.|++|+|+=|.. ..+.+...+|-+.++.++++...
T Consensus 164 dl~elgrtpvavv~agvks----iLdip~tle~letq~V~vvtlgs 205 (614)
T KOG3009|consen 164 DLTELGRTPVAVVSAGVKS----ILDIPKTLEYLETQGVVVVTLGS 205 (614)
T ss_pred hhhhhcCCcceEEecchhh----hccchhhhhhhccccEEEEEeCC
Confidence 3444589999999987654 78888889999999999988643
No 26
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=69.06 E-value=14 Score=42.28 Aligned_cols=88 Identities=20% Similarity=0.420 Sum_probs=61.6
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009309 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (538)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGR 411 (538)
+.|+...+ ...++|+.|-=..-+|... =+=+.+..||||-|.. ..|+-.|++.....+.|||+.+.|..|
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYtG- 107 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYTG- 107 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccHH-
Confidence 45555443 4678999875333344211 1334577899999886 578999999998757899988864333
Q ss_pred CcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCC
Q 009309 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVR 461 (538)
Q Consensus 412 GiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~ 461 (538)
|--+||+++ +.++.-|++
T Consensus 108 -------------------------------D~lnF~~A~-e~a~~eg~~ 125 (574)
T TIGR02361 108 -------------------------------DRLNFGLAA-EKAKAEGYN 125 (574)
T ss_pred -------------------------------HhhhHHHHH-HHHHhCCCc
Confidence 566799998 999998985
No 27
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=65.20 E-value=26 Score=37.57 Aligned_cols=87 Identities=20% Similarity=0.364 Sum_probs=60.1
Q ss_pred EEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 009309 338 CYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRG 412 (538)
Q Consensus 338 ~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRG 412 (538)
.|+...+ ...++|+.|-=..-+|... =+=+.|..||||-|.. ..|.-+|++.+. .|.|||+...|..|
T Consensus 36 v~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~-~~~GvL~iv~NYtG-- 108 (331)
T PRK14481 36 IVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVD-TGAGVLLIVKNYSG-- 108 (331)
T ss_pred EEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHH--
Confidence 4554443 4578888875333343211 1334588899999886 478999998886 46799988764332
Q ss_pred cchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCe
Q 009309 413 IGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRT 462 (538)
Q Consensus 413 iGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~k 462 (538)
|--+||+++ +.++.-|++-
T Consensus 109 ------------------------------D~lnF~lA~-E~a~~eGi~v 127 (331)
T PRK14481 109 ------------------------------DVMNFEMAA-ELAEMEGIEV 127 (331)
T ss_pred ------------------------------HhccHHHHH-HHHHhCCCCE
Confidence 667899999 9999999864
No 28
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=58.98 E-value=3.6 Score=34.64 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCCCCCCc-cHHHHHHHHHCCCEEEEEeCCC
Q 009309 96 DFFVSDAEGDPDCPTEGFS-SIEQALNTLRQGKFVIVVEDEN 136 (538)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~-~Ie~Ai~alr~G~~VvV~Dde~ 136 (538)
.-|+..+..|...-..++. .|++...+|++|+.||++|.+.
T Consensus 18 eefv~ReGTdyG~~E~sL~~kv~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 18 EEFVLREGTDYGEQELSLEEKVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp HHHHH------------HHHHHHHHHHHHHTTSEEEEE-TTT
T ss_pred HHHHHccCcccCcccccHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 3444444333322223333 4899999999999999998753
No 29
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=58.31 E-value=30 Score=37.16 Aligned_cols=89 Identities=20% Similarity=0.398 Sum_probs=60.2
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009309 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (538)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGR 411 (538)
..|+...+....++|+.|-=..-+|... =+=+.|..||||-|.. ..|.-+|++.+.. |.|||+...|-.|
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYtG- 109 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYTG- 109 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcHH-
Confidence 3455544434568888875333344211 1334578899999886 5789999988764 6799988764332
Q ss_pred CcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCe
Q 009309 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRT 462 (538)
Q Consensus 412 GiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~k 462 (538)
|--+||+++ +.++.-|++-
T Consensus 110 -------------------------------D~lnF~mA~-E~a~~eGi~v 128 (329)
T TIGR02363 110 -------------------------------DVMNFEMAA-ELAEDEGIKV 128 (329)
T ss_pred -------------------------------HhccHHHHH-HHHHHcCCcE
Confidence 566799998 9999989853
No 30
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=56.70 E-value=32 Score=39.47 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=59.1
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceEE-----EcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009309 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLVR-----VHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (538)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGR 411 (538)
..|+...+ ...++|+.|-=..-+|...= +=+.|..||||-|.. ..|+-.|++.+. .|.|||+.+.|..|
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYtG- 107 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYAG- 107 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHH-
Confidence 34444433 45788888753333442111 334578899999886 578999998886 56799988764333
Q ss_pred CcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCC
Q 009309 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVR 461 (538)
Q Consensus 412 GiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~ 461 (538)
|--+|++++ +.++.-|++
T Consensus 108 -------------------------------D~lnF~~A~-e~a~~~g~~ 125 (568)
T PRK14479 108 -------------------------------DVMNFGLAA-ELARAEGID 125 (568)
T ss_pred -------------------------------HHhhHHHHH-HHHHhcCCc
Confidence 566799998 999998985
No 31
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=54.52 E-value=55 Score=35.54 Aligned_cols=88 Identities=20% Similarity=0.373 Sum_probs=58.9
Q ss_pred EEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 009309 338 CYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRG 412 (538)
Q Consensus 338 ~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRG 412 (538)
.|+........++|+.|-=..-+|... =+=+.|..||||-|.. ..|+-+|++.+. .|.|||+.+.|-.|
T Consensus 35 v~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYtG-- 108 (356)
T PRK11468 35 VTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYTG-- 108 (356)
T ss_pred EEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH--
Confidence 344433324568888875333344211 1334577899999886 578999998865 56799988864333
Q ss_pred cchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCe
Q 009309 413 IGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRT 462 (538)
Q Consensus 413 iGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~k 462 (538)
|--+|++++ +.++.-|++-
T Consensus 109 ------------------------------DvlNF~mAa-E~a~~eGi~v 127 (356)
T PRK11468 109 ------------------------------DVLNFETAT-ELLHDSGVKV 127 (356)
T ss_pred ------------------------------hhccHHHHH-HHHHhCCCcE
Confidence 566799998 9999889863
No 32
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=53.55 E-value=14 Score=39.41 Aligned_cols=86 Identities=27% Similarity=0.541 Sum_probs=51.6
Q ss_pred EEEeCCCCceEEEEEEccCCCCCcce---E--EEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 009309 338 CYRSKLDGTDHVAVVKGNMGNGQDVL---V--RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRG 412 (538)
Q Consensus 338 ~Yr~~~dg~EHlALv~Gdi~~~~~vL---V--RVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRG 412 (538)
+|+... ....++|+.|-=..-+|.. | =+=+.|..||||-|.. ..|.-+|++.+ ..+.|||+.+.|..|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 444443 5556888876422223311 1 1334577899999885 57999999998 567799988864332
Q ss_pred cchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCC
Q 009309 413 IGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVR 461 (538)
Q Consensus 413 iGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~ 461 (538)
|-=+||+++ +.++.-|++
T Consensus 93 ------------------------------D~lNF~~A~-E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAA-EKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHH-HHHHHTT--
T ss_pred ------------------------------HHhhHHHHH-HHHHhCCCC
Confidence 556799999 999998984
No 33
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=49.47 E-value=4.5 Score=35.39 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHcCCCeeeeccCCccc-----ccccccCCcEEEEEeecCCCCChhHHHHHHHH
Q 009309 452 QQILRDLGVRTMRLMTNNPAK-----FIGLKGYGLAVIGRVPILTPITEENKRYLETK 504 (538)
Q Consensus 452 ~QILrdLGV~kIrLLTNNP~K-----~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK 504 (538)
++-|++.| +++.++|||+.+ ..-|+..||++.. .-+..+...-..||+.+
T Consensus 23 l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~--~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 23 LDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPVDE--DEIITSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT--G--GGEEEHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCCCc--CEEEChHHHHHHHHHhc
No 34
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=49.44 E-value=53 Score=35.29 Aligned_cols=86 Identities=23% Similarity=0.427 Sum_probs=58.3
Q ss_pred EEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 009309 338 CYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRG 412 (538)
Q Consensus 338 ~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRG 412 (538)
.|+.... ...++|+.|-=..-+|... =+=+.|..||||-|.. ..|.-+|++... .|.|||+...|-.|
T Consensus 35 v~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~-~~~GvL~ivkNYtG-- 107 (329)
T PRK14483 35 VYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVP-KGKGVFFIIKNFEA-- 107 (329)
T ss_pred EEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH--
Confidence 4554443 4678898875333344211 1334578899999886 578999998875 45699988764333
Q ss_pred cchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCC
Q 009309 413 IGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVR 461 (538)
Q Consensus 413 iGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~ 461 (538)
|-=+|++++ +.++.-|++
T Consensus 108 ------------------------------DvlnF~mA~-E~a~~eGi~ 125 (329)
T PRK14483 108 ------------------------------DVAEFSAAI-QIARQEGRQ 125 (329)
T ss_pred ------------------------------HhhhHHHHH-HHHHhCCCc
Confidence 556788988 888888885
No 35
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=46.67 E-value=72 Score=34.27 Aligned_cols=87 Identities=23% Similarity=0.415 Sum_probs=59.4
Q ss_pred EEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 009309 338 CYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRG 412 (538)
Q Consensus 338 ~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGRG 412 (538)
.|+...+ ...++|+.|-=..-+|... =+=+.|..||||-|.. ..|.-+|++.+. .|.|||+...|-.|
T Consensus 33 v~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~-~~~GvL~ivkNYtG-- 105 (326)
T TIGR02362 33 IYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVD-RGKGVFVIIKNFEA-- 105 (326)
T ss_pred EEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEeccCHH--
Confidence 4444443 4678888875333344211 1334577899999886 478999999876 46799988764332
Q ss_pred cchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCe
Q 009309 413 IGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRT 462 (538)
Q Consensus 413 iGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~k 462 (538)
|-=+||+++ +.++.-|++-
T Consensus 106 ------------------------------D~lNF~mA~-E~a~~eGi~v 124 (326)
T TIGR02362 106 ------------------------------DLSEFSQAI-QQARQEGRQI 124 (326)
T ss_pred ------------------------------HHhhHHHHH-HHHHHcCCcE
Confidence 556799999 9999999863
No 36
>PRK04966 hypothetical protein; Provisional
Probab=46.60 E-value=12 Score=31.73 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.3
Q ss_pred cHHHHHHHHHCCCEEEEEeCCC
Q 009309 115 SIEQALNTLRQGKFVIVVEDEN 136 (538)
Q Consensus 115 ~Ie~Ai~alr~G~~VvV~Dde~ 136 (538)
.|++...+|++|+.|||+|...
T Consensus 38 kv~qv~~qL~~G~~viv~se~~ 59 (72)
T PRK04966 38 KVADVKRQLQSGEAVLVWSELH 59 (72)
T ss_pred HHHHHHHHHHcCCEEEEECCCC
Confidence 5899999999999999998753
No 37
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=45.84 E-value=57 Score=37.64 Aligned_cols=87 Identities=17% Similarity=0.359 Sum_probs=58.4
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceEE-----EcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009309 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLVR-----VHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (538)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYLr~qEGR 411 (538)
+.|+...+ ...++||.|-=..-+|...= +=+.+..||||-|.. ..|.-+|++... .|.|||+.+.|..|
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYtG- 110 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYTG- 110 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccHH-
Confidence 44554443 45788888753333442111 334577899999886 578999999775 56699988864433
Q ss_pred CcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCC
Q 009309 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVR 461 (538)
Q Consensus 412 GiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~ 461 (538)
|--+||+++ +.++.-|++
T Consensus 111 -------------------------------D~lnF~lA~-e~a~~eGi~ 128 (584)
T PTZ00375 111 -------------------------------DILNFELAV-EQARARGIQ 128 (584)
T ss_pred -------------------------------HHhhHHHHH-HHHHhCCCc
Confidence 556788888 888888885
No 38
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=43.68 E-value=20 Score=28.21 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCcEEeehhH
Q 009309 289 PSLRKLALEHSIPISSIIDL 308 (538)
Q Consensus 289 ~~l~~fA~~h~L~ivsi~DL 308 (538)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46899999999999999993
No 39
>PRK08296 hypothetical protein; Provisional
Probab=42.19 E-value=22 Score=40.93 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=54.9
Q ss_pred CCCEEEEEeCCC-CCcceeEEEEcCCCCHHHHHHHHHhCCceEEeec-----CHHHHHhcCCCCCCCCCCCCCCCCCceE
Q 009309 125 QGKFVIVVEDEN-GDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGM-----KEEDLQRLNLPLMSPEAENEDSSAPTFT 198 (538)
Q Consensus 125 ~G~~VvV~Dde~-rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam-----~~~~~~rL~Lp~m~~~~~n~~~~~taFt 198 (538)
.|...||.+.++ .+-+..-|+-+...+|..+..+ ....|+|+-.= ..-.|+.+|+|.++........-.+.-.
T Consensus 511 ~G~vrvv~~~~~~~~~~~g~ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~~ 589 (603)
T PRK08296 511 EGPARVIRSADELSEVQEGEILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQR 589 (603)
T ss_pred EEEEEEeCCHHHHHhccCceEEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCCE
Confidence 466556655433 1222334555677788887777 66888887532 2347999999999886433444567889
Q ss_pred EeeeccCCCc
Q 009309 199 ITVDAKFGTT 208 (538)
Q Consensus 199 VsVDa~~gtt 208 (538)
|+||..+|+.
T Consensus 590 V~vDg~~G~V 599 (603)
T PRK08296 590 LRVDGTKGVV 599 (603)
T ss_pred EEEECCCCEE
Confidence 9999876653
No 40
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=41.92 E-value=67 Score=32.67 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHHHHHHHH-HcCCEEEEEEeCCCCCCcchHHHhHhhhhcc--cCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCe
Q 009309 386 QLDLAMQIIE-KAGKGVVVYLRGHEGRGIGLGHKLRAYNLQD--QGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRT 462 (538)
Q Consensus 386 qL~~Al~~I~-~~G~GVlVYLr~qEGRGiGL~~Kl~ay~lQd--~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~k 462 (538)
+|..|.+.+. ...--+|+|=.-...-.+|- .++..- +++ .|...... ..+++..|+.||+++
T Consensus 58 ~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~-~~~~~~-i~~~~~g~p~tt~-------------~~A~~~AL~alg~~R 122 (239)
T TIGR02990 58 RLTEAAALILPDEELDVVAYSCTSASVVIGD-DEVTRA-INAAKPGTPVVTP-------------SSAAVDGLAALGVRR 122 (239)
T ss_pred hHHHHHHHhcCCCCCCEEEEccchhheecCH-HHHHHH-HHhcCCCCCeeCH-------------HHHHHHHHHHcCCCE
Confidence 4555555553 36888999976333334442 222221 111 12211111 112335699999999
Q ss_pred eeeccCCccc-----ccccccCCcEEEEEeecCC
Q 009309 463 MRLMTNNPAK-----FIGLKGYGLAVIGRVPILT 491 (538)
Q Consensus 463 IrLLTNNP~K-----~~aL~g~GIeV~ervpl~~ 491 (538)
|-|+|-.+.- ...|+..|++|+...-+..
T Consensus 123 IalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 123 ISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred EEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 9999977655 3447889999988765443
No 41
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=40.32 E-value=16 Score=31.89 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=29.4
Q ss_pred hHhHHHHHHHcCCCeeeeccCCcccccccccCCcE
Q 009309 448 GIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLA 482 (538)
Q Consensus 448 gigA~QILrdLGV~kIrLLTNNP~K~~aL~g~GIe 482 (538)
|+.++|++|.+| .+|...+.++.|...++.+|..
T Consensus 3 G~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 3 GLMAIQLAKAMG-AKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES
T ss_pred HHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc
Confidence 566679999999 8888889899999999999944
No 42
>PRK00304 hypothetical protein; Provisional
Probab=39.12 E-value=33 Score=29.42 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.7
Q ss_pred cHHHHHHHHHCCCEEEEEeCC
Q 009309 115 SIEQALNTLRQGKFVIVVEDE 135 (538)
Q Consensus 115 ~Ie~Ai~alr~G~~VvV~Dde 135 (538)
.|++...+|++|+.||++|..
T Consensus 37 kv~qv~~qL~~G~~vIvfse~ 57 (75)
T PRK00304 37 RVLRVRQALTKGQAVILFDPE 57 (75)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 588999999999999999764
No 43
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=38.63 E-value=64 Score=28.71 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=29.2
Q ss_pred HHH-HHcCCCeee--eccCCcccccccccCCcEEEEEee
Q 009309 453 QIL-RDLGVRTMR--LMTNNPAKFIGLKGYGLAVIGRVP 488 (538)
Q Consensus 453 QIL-rdLGV~kIr--LLTNNP~K~~aL~g~GIeV~ervp 488 (538)
+++ +.+|+++|. ++.+|+.-++..+.+|.++.+..+
T Consensus 103 ~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 103 EYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 567 899999987 578888889999999999998876
No 44
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=37.98 E-value=1.6e+02 Score=33.66 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=68.1
Q ss_pred EEEEcCCCCHHHHHHHHHhCCceEEeecC-----HHHHHhcCCCCCCCCCCCCCCCCCceEEeeeccCCCc-cCCC----
Q 009309 143 LVMAASLTSPRHVAFMVKHGSGIVSVGMK-----EEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTT-TGVS---- 212 (538)
Q Consensus 143 LV~aAe~~T~e~vaFm~r~~~Glicvam~-----~~~~~rL~Lp~m~~~~~n~~~~~taFtVsVDa~~gtt-TGIS---- 212 (538)
-|+-++..+|+.+..| +.+.|+|+--=. .-.|+.||+|.++............-.|+||...|.. -|.-
T Consensus 382 ~ILV~~~t~P~~~~~~-~~a~GIVte~Gg~tSHaAivARelgiP~VvG~~~~~~~~~~G~~VtvDg~~G~V~~G~~~~~~ 460 (530)
T PRK05878 382 VILVRDHTRPDDVHGM-LAAQGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALSA 460 (530)
T ss_pred EEEEECCCCHHHHhhh-HhheEEEEccCCccchHHHHHHHcCCCEEEcccchhhccCCCCEEEEECCCCEEEeCcccCcC
Confidence 5566778899999999 458888875322 3379999999998753223333457899999865542 2322
Q ss_pred ----hhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccC-chhHHHHHHHHHcCCC
Q 009309 213 ----ASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRA-GHTEASVDLLVLAGLN 269 (538)
Q Consensus 213 ----A~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~-GHTEAaVdLarlAGl~ 269 (538)
.....++++.+|+. |-||..+-+.--.+. .-.+++|+.+-.||..
T Consensus 461 ~~~~~~~~~~~l~~~ad~------------i~~L~l~~n~d~~~~~~~~~~~~~~~~~~~~~ 510 (530)
T PRK05878 461 WSESDTPELRELADIAQR------------ISPLRAHASGDYPRLDDDSDDAVRAALAAGHA 510 (530)
T ss_pred ccccCCHHHHHHHHHHHH------------cCCCeeEeCCCCCCCCCccchhHHHHHhcccc
Confidence 12345566666644 223333333222221 1345677777777754
No 45
>PLN02880 tyrosine decarboxylase
Probab=37.78 E-value=65 Score=35.96 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=44.4
Q ss_pred ccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcE
Q 009309 251 RRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPI 302 (538)
Q Consensus 251 ~R~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~i 302 (538)
-+...-|.+++-.+.+|+.|.+|++..=.-..|...+.+++.++|++||+.+
T Consensus 221 md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 221 LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 3455677888888889999999999986655789999999999999999876
No 46
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=33.52 E-value=2.3e+02 Score=32.40 Aligned_cols=98 Identities=20% Similarity=0.365 Sum_probs=66.3
Q ss_pred ceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEE-----EcccCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEE
Q 009309 331 WGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVR-----VHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYL 405 (538)
Q Consensus 331 ~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltgDvfgS~~CDCg~qL~~Al~~I~~~G~GVlVYL 405 (538)
+-.-+++.|++......|++|+.|-=..-+|.--- +-+.-+-||||-|.. -.|...|++..+. -.|.|++.
T Consensus 31 ~~~~r~vl~~~~~~~~~kValiSGGGSGHEPtHAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV~~-~~GtLlIV 106 (582)
T KOG2426|consen 31 HPEDRVVLFRDASAPKPKVALISGGGSGHEPTHAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAVEG-EAGTLLIV 106 (582)
T ss_pred cccceEEEEeecCCCCCceEEEeCCCCCCCcccccccccchhhhhhhcccccCCc---HHHHHHHHHHhcc-CCceEEEE
Confidence 34567788888766668999999864444553111 122345689998875 4699999999944 45888888
Q ss_pred eCCCCCCcchHHHhHhhhhcccCCcchhhhhhcCCccccchhhHhHHHHHHHcCCCeeeec
Q 009309 406 RGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLM 466 (538)
Q Consensus 406 r~qEGRGiGL~~Kl~ay~lQd~G~DTveAn~~lG~~~D~RdYgigA~QILrdLGV~kIrLL 466 (538)
.|=.| |-=+||++| .=-|..|++ ++|+
T Consensus 107 KNYTG--------------------------------D~LhFGLAa-Erara~G~~-ve~v 133 (582)
T KOG2426|consen 107 KNYTG--------------------------------DRLHFGLAA-ERARAAGIK-VELV 133 (582)
T ss_pred ecccc--------------------------------ceeehhhhH-HHHHhcCCc-eEEE
Confidence 64332 444688888 888888884 4544
No 47
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.33 E-value=38 Score=34.58 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=42.2
Q ss_pred HHHHHcCCCeeeeccCC-----cccccccccCCcEEEEEeecCCCCC------hhHHHHHHHHhhhcC
Q 009309 453 QILRDLGVRTMRLMTNN-----PAKFIGLKGYGLAVIGRVPILTPIT------EENKRYLETKRTKMG 509 (538)
Q Consensus 453 QILrdLGV~kIrLLTNN-----P~K~~aL~g~GIeV~ervpl~~~~~------~~n~~YL~tK~~k~g 509 (538)
+-|+.||+++|-++|-. ..-...|++.|+||+...-+-...| +-..-|=-+|+-+-+
T Consensus 111 ~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~ 178 (238)
T COG3473 111 EALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTP 178 (238)
T ss_pred HHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCC
Confidence 77999999999999853 2235678999999999887665443 335667777777633
No 48
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=32.72 E-value=34 Score=36.09 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=27.8
Q ss_pred HHHHHcCCCeeeeccCCcccccccccCCcEEEEEee
Q 009309 453 QILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVP 488 (538)
Q Consensus 453 QILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervp 488 (538)
+.|+..||++|||..-+|.=+.++++-||+|.--||
T Consensus 20 ~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 20 SLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 889999999999999999999999999999998888
No 49
>PLN02590 probable tyrosine decarboxylase
Probab=31.59 E-value=96 Score=35.33 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=42.2
Q ss_pred ccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcE
Q 009309 251 RRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPI 302 (538)
Q Consensus 251 ~R~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~i 302 (538)
-+...-|++++-.+.+|+.|..|++..=.-..|..-+.+++.++|++||+-+
T Consensus 269 md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~Wl 320 (539)
T PLN02590 269 MPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWL 320 (539)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeE
Confidence 3455677888888889999999999886655688889999999999998754
No 50
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.44 E-value=1.2e+02 Score=32.28 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHCCCEEEEEeCCC-CCcceeE--EEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCC
Q 009309 114 SSIEQALNTLRQGKFVIVVEDEN-GDVEGNL--VMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENE 190 (538)
Q Consensus 114 ~~Ie~Ai~alr~G~~VvV~Dde~-rEnEgdL--V~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~ 190 (538)
..|...+++|++|+.|.+.-|.| ..+++.+ .|+-+..|+--++.|++.++=-| +|.+... |
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~v-------------ip~~~~r--~- 245 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAV-------------VPVFPVR--N- 245 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCE-------------EEEEEEE--e-
Confidence 57999999999999995555555 5555533 46778888888888888764222 1222111 2
Q ss_pred CCCCCceEEeeeccCCCccCCChhhHHHHHHHHcC
Q 009309 191 DSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSS 225 (538)
Q Consensus 191 ~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAd 225 (538)
.++..|++.|... .|+--..|=+.+.+.+++
T Consensus 246 -~~g~~y~l~i~p~---~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 246 -PDGSGYTLHIHPP---MTDDPSEDVEADAQRMND 276 (308)
T ss_pred -CCCCeEEEEEecc---ccCCCCCCHHHHHHHHHH
Confidence 2355699999872 344444555555555554
No 51
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=30.13 E-value=83 Score=36.38 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEe
Q 009309 253 AGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISS 304 (538)
Q Consensus 253 ~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivs 304 (538)
+|| ||-.-||.-|-.=+=++.-+|..+||-|.-.-|+.++|+.-+.|+|-
T Consensus 209 PGH--aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVv 258 (683)
T KOG1145|consen 209 PGH--AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVV 258 (683)
T ss_pred CcH--HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEE
Confidence 455 44555666665554444455555589999999999999999999874
No 52
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=28.75 E-value=1.2e+02 Score=30.98 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHC--------CCEEEEEeCCCCC--------------cceeEEEEcCCCCHHHHHHHHHhCCceEEeecCHH
Q 009309 116 IEQALNTLRQ--------GKFVIVVEDENGD--------------VEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEE 173 (538)
Q Consensus 116 Ie~Ai~alr~--------G~~VvV~Dde~rE--------------nEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~~~ 173 (538)
+++-+.+++. |+-||||||---. .-.++|+|.--+.++...-|..++.+++|+.|+..
T Consensus 106 l~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 106 LLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred HHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 4455556654 5678999983211 12478888888888888999999999999998865
No 53
>PRK06354 pyruvate kinase; Provisional
Probab=24.51 E-value=1.2e+02 Score=35.07 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=54.2
Q ss_pred CCCEEEEEeCCC-CCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecC-----HHHHHhcCCCCCCCCCCCCCCCCCceE
Q 009309 125 QGKFVIVVEDEN-GDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMK-----EEDLQRLNLPLMSPEAENEDSSAPTFT 198 (538)
Q Consensus 125 ~G~~VvV~Dde~-rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~-----~~~~~rL~Lp~m~~~~~n~~~~~taFt 198 (538)
.|..+++-+.++ .+-+..-|+-++..+|+.+..| +...|+|+-.=. .-.|+.||+|.++........-.....
T Consensus 494 ~G~v~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~~-~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVvg~~~~~~~l~~G~~ 572 (590)
T PRK06354 494 SGKARVAKTAAEVAKVNEGDILVTPSTDADMIPAI-EKAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQI 572 (590)
T ss_pred cceEEEeCChHhhccCCCCeEEEeCCCCHHHHHhH-HhcEEEEEecCCCcchHHHHHHhcCCCEEEeccchhhccCCCCE
Confidence 565555544333 1222344666777999887775 889999986432 348999999998875333334456789
Q ss_pred EeeeccCCC
Q 009309 199 ITVDAKFGT 207 (538)
Q Consensus 199 VsVDa~~gt 207 (538)
|+||...|.
T Consensus 573 v~vDg~~G~ 581 (590)
T PRK06354 573 ITVDAARGV 581 (590)
T ss_pred EEEECCCCE
Confidence 999987664
No 54
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.84 E-value=1e+02 Score=32.77 Aligned_cols=130 Identities=22% Similarity=0.286 Sum_probs=80.1
Q ss_pred HHHHHHHHcC--CCCeEEEEEecCC-CCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhcccc----------
Q 009309 258 ASVDLLVLAG--LNPVSVLSAVVDP-EDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAI---------- 324 (538)
Q Consensus 258 AaVdLarlAG--l~Paavi~eiv~~-~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~---------- 324 (538)
|+.-|-.|.+ ..-++|+..-=.+ +-|.-...+..+++|.+||||+..-+.|..- ..++++..
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~-----e~~~~l~~l~~D~ivvva 87 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDP-----EFLEELAALDPDLIVVVA 87 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcH-----HHHHHHhccCCCEEEEEe
Confidence 3444555554 6666666654322 0133455688999999999999988776531 11111111
Q ss_pred --cccc------CCceeEEEEE-----EEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCCC-----hHH
Q 009309 325 --SRLP------TKWGLFQAYC-----YRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDC-----GNQ 386 (538)
Q Consensus 325 --~~Lp------T~~G~F~~~~-----Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDC-----g~q 386 (538)
.-|| .++|-+.+|. ||- -...|.||..||-..+ .++-+|...--+||++.+.+|.= ...
T Consensus 88 yG~ilp~~iL~~~~~G~iNvH~SLLPr~RG--aAPIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~ 164 (307)
T COG0223 88 YGQILPKEILDLPPYGCINLHPSLLPRYRG--AAPIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGS 164 (307)
T ss_pred hhhhCCHHHHhcCcCCeEEecCccCccccC--ccHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHH
Confidence 1122 2367777776 442 1245789999986654 58899999989999999888743 345
Q ss_pred HHHHHHHHH
Q 009309 387 LDLAMQIIE 395 (538)
Q Consensus 387 L~~Al~~I~ 395 (538)
|...+..+.
T Consensus 165 L~~kLa~~g 173 (307)
T COG0223 165 LHDKLAELG 173 (307)
T ss_pred HHHHHHHHH
Confidence 655544443
No 55
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=23.14 E-value=2e+02 Score=29.16 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEE
Q 009309 257 EASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPIS 303 (538)
Q Consensus 257 EAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~iv 303 (538)
|.++.=.+..|..|..|++...+...|...+.+++.++|++||++++
T Consensus 136 ~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~ 182 (345)
T cd06450 136 EAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLH 182 (345)
T ss_pred HHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEE
Confidence 34443334456677666555444338999999999999999998765
No 56
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=22.95 E-value=82 Score=26.02 Aligned_cols=24 Identities=42% Similarity=0.688 Sum_probs=17.1
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCC
Q 009309 112 GFSSIEQALNTLRQGKFVIVVEDEN 136 (538)
Q Consensus 112 ~~~~Ie~Ai~alr~G~~VvV~Dde~ 136 (538)
.|+.++++.++|++|++|+| |=+.
T Consensus 8 ~~~D~~~i~~~l~~g~~Viv-nl~~ 31 (73)
T PF04472_consen 8 SFEDAREIVDALREGKIVIV-NLEN 31 (73)
T ss_dssp SGGGHHHHHHHHHTT--EEE-E-TT
T ss_pred CHHHHHHHHHHHHcCCEEEE-ECCC
Confidence 57789999999999999975 4433
No 57
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=22.70 E-value=2e+02 Score=26.10 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=39.3
Q ss_pred CchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEee
Q 009309 253 AGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSI 305 (538)
Q Consensus 253 ~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi 305 (538)
-.|+-+++..++..|+...+++....++.+ .........+++..++|++-+
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~--~~~~~~~~~i~~~~gip~LG~ 132 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKE--GLATLNVETIERLTGIPVLGI 132 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCcc--chhhhhHHHHHHhcCCCEEEe
Confidence 568889999999999999999988776522 222356788899999998753
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=22.01 E-value=1.5e+02 Score=33.80 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=34.8
Q ss_pred cccCchhHHHHHHHHHc--CCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEee
Q 009309 250 LRRAGHTEASVDLLVLA--GLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSI 305 (538)
Q Consensus 250 l~R~GHTEAaVdLarlA--Gl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi 305 (538)
+-++||. |.-.||.- -+.+.+++.= +.+||-|...-++...|+..+.|+|=.
T Consensus 60 iDTPGHe--AFt~mRaRGa~vtDIaILVV--a~dDGv~pQTiEAI~hak~a~vP~iVA 113 (509)
T COG0532 60 IDTPGHE--AFTAMRARGASVTDIAILVV--AADDGVMPQTIEAINHAKAAGVPIVVA 113 (509)
T ss_pred EcCCcHH--HHHHHHhcCCccccEEEEEE--EccCCcchhHHHHHHHHHHCCCCEEEE
Confidence 3445553 34444444 4555555543 334799999999999999999998754
No 59
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=20.88 E-value=1.2e+02 Score=23.31 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=17.3
Q ss_pred hHHHHHHHHHcCCcEEeehhHHH
Q 009309 288 LPSLRKLALEHSIPISSIIDLIR 310 (538)
Q Consensus 288 ~~~l~~fA~~h~L~ivsi~DLi~ 310 (538)
+..+++||+++|.+.||.+.+..
T Consensus 21 r~~~E~~Ar~~G~~~IT~e~v~~ 43 (45)
T PF08369_consen 21 RDAAEKYARERGYDEITVEVVDA 43 (45)
T ss_dssp HHHHHHHHHHCT-SEE-HHHHHH
T ss_pred HHHHHHHHHHcCCCeECHHHHHh
Confidence 45689999999999999887654
No 60
>PLN02398 hydroxyacylglutathione hydrolase
Probab=20.18 E-value=1.1e+03 Score=25.32 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=77.6
Q ss_pred cccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCcEEeehhHHHHHhhccchhhccccccccC
Q 009309 250 LRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPT 329 (538)
Q Consensus 250 l~R~GHTEAaVdLarlAGl~Paavi~eiv~~~dG~ma~~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVerv~~~~LpT 329 (538)
+.-+|..+.-++.++-.|+...+|++.=-.. |-. --+.+|.++++.+++.-..-..+...-+ ..+.... ..
T Consensus 102 vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~-DH~----GG~~~L~~~~ga~V~g~~~~~~~i~~~d---~~v~dGd-~i 172 (329)
T PLN02398 102 VVDPSEAVPVIDALSRKNRNLTYILNTHHHY-DHT----GGNLELKARYGAKVIGSAVDKDRIPGID---IVLKDGD-KW 172 (329)
T ss_pred EEcCCCHHHHHHHHHhcCCCceEEEECCCCc-hhh----CCHHHHHHhcCCEEEEehHHhhhccCCc---EEeCCCC-EE
Confidence 3445566666666777788887777754433 211 1135667788888876543221111001 1111111 11
Q ss_pred CceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCccccccCCCCCC-----ChHHHHHHHHHHHHcCCEEEEE
Q 009309 330 KWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCD-----CGNQLDLAMQIIEKAGKGVVVY 404 (538)
Q Consensus 330 ~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CD-----Cg~qL~~Al~~I~~~G~GVlVY 404 (538)
..|.+++.++...-....|+++...+ .. ..++||.+-+..|. ...|+.++++.|.+-..-.+||
T Consensus 173 ~lgg~~l~vi~tPGHT~GhI~~~~~~----~~-------vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vy 241 (329)
T PLN02398 173 MFAGHEVLVMETPGHTRGHISFYFPG----SG-------AIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIY 241 (329)
T ss_pred EECCeEEEEEeCCCcCCCCEEEEECC----CC-------EEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEE
Confidence 13445555555444456688876532 11 24678977665553 2358889999998766567777
Q ss_pred EeCCCC
Q 009309 405 LRGHEG 410 (538)
Q Consensus 405 Lr~qEG 410 (538)
- +||.
T Consensus 242 p-GHgy 246 (329)
T PLN02398 242 C-GHEY 246 (329)
T ss_pred C-CCCC
Confidence 4 6775
No 61
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=20.15 E-value=1.2e+02 Score=36.21 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCCEEEEEeCCC--CCcceeEEEEcCCCCHHHHHHHHHhCCceEEeecC-----HHHHHhcCCCCCCCCCCCCCCCCCce
Q 009309 125 QGKFVIVVEDEN--GDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMK-----EEDLQRLNLPLMSPEAENEDSSAPTF 197 (538)
Q Consensus 125 ~G~~VvV~Dde~--rEnEgdLV~aAe~~T~e~vaFm~r~~~Glicvam~-----~~~~~rL~Lp~m~~~~~n~~~~~taF 197 (538)
.|+.+++.+.++ .-.+|+ |+-++..+|+.+..| +...|+|+--=. .-.++.|++|.++........-...-
T Consensus 368 ~G~v~v~~~~~~~~~~~~g~-ILV~~~~~p~~~~~l-~~~~givt~~Gg~tSH~AilAR~lgIPavvg~~~~~~~l~~G~ 445 (795)
T PRK06464 368 SGKVRVILDISEMDKVQPGD-VLVTDMTDPDWEPVM-KRASAIVTNRGGRTCHAAIIARELGIPAVVGTGNATEVLKDGQ 445 (795)
T ss_pred eeEEEEeCCHHHHHhcCCCe-EEEECCCCHHHHHHH-HhheEEEEcCCCCcchHHHHHHHcCCCEEEccCcccceecCCC
Confidence 344445544333 122444 566889999999999 778888874322 23799999999987633334445667
Q ss_pred EEee---eccCCCcc-CCCh
Q 009309 198 TITV---DAKFGTTT-GVSA 213 (538)
Q Consensus 198 tVsV---Da~~gttT-GISA 213 (538)
.|+| |..+|... |-+.
T Consensus 446 ~v~v~~~Dg~~G~v~~~~~~ 465 (795)
T PRK06464 446 EVTVSCAEGDTGYVYEGLLE 465 (795)
T ss_pred EEEEEeccCCCcEEEeCCch
Confidence 8888 88766643 5554
Done!