RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009309
(538 letters)
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc,
magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB:
2bz0_A
Length = 196
Score = 369 bits (951), Expect = e-127
Identities = 91/193 (47%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGS 378
++R A ++LPT WG F + G DHVA+V G++ VL RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 379 ARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIEL 438
RCDCG QL+ A+ I + G+G+++Y R EGR IGL +K+RAY LQDQG+DTV+AN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 439 GLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENK 498
G A D R++ + A + + LGV +RL+TNNP K L G+ ++ RVP++ N+
Sbjct: 122 GFAADERDFTLCA-DMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNE 180
Query: 499 RYLETKRTKMGHI 511
YL+TK KMGH+
Sbjct: 181 HYLDTKAEKMGHL 193
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase,
synthetic gene, ISO; 1.60A {Candida albicans} SCOP:
d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Length = 204
Score = 293 bits (752), Expect = 2e-97
Identities = 88/205 (42%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Query: 110 TEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVG 169
T F+ IE+AL + G+F+IV++DE+ + EG+L+MAA L + +AF+V++ SG V V
Sbjct: 2 TNIFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVP 61
Query: 170 MKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSK 229
+ EE +L LP M A D +TIT D GTTTG+SA DRA T +L++P+SK
Sbjct: 62 LSEERANQLELPPML--ANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSK 119
Query: 230 PENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLP 289
P++F +PGH+ PL+ G + +R GHTEA+V L LAGL P V+ +V EDG M L
Sbjct: 120 PQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLD 179
Query: 290 SLRKLALEHSIPISSIIDLIRYRRK 314
+ +H I I +I L+ Y K
Sbjct: 180 DCIQFGKKHGIKIININQLVEYISK 204
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A
{Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A
Length = 206
Score = 289 bits (742), Expect = 6e-96
Identities = 92/205 (44%), Positives = 130/205 (63%), Gaps = 3/205 (1%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
S+E+A+ + GK VIV++DE+ + EG+L+ AA +P VAFMV++ SG + V +
Sbjct: 4 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 63
Query: 173 EDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPEN 232
RL L M A N+D +T+TVDA+ G TG+SASDRA T+ L+ P S ++
Sbjct: 64 AICDRLGLLPMY--AVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADD 121
Query: 233 FRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDP-EDGSMSSLPSL 291
F RPGHV PL+ ++GGVLRR GHTEA+VDL +AGL P + +V ++GSM+ L
Sbjct: 122 FTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDEL 181
Query: 292 RKLALEHSIPISSIIDLIRYRRKRE 316
R A EH + + +I DLI +RRK E
Sbjct: 182 RVFADEHGLALITIADLIEWRRKHE 206
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavine biosynthesis, skeletal rearrangement,
antimicrobial target; 1.40A {Escherichia coli} SCOP:
d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Length = 217
Score = 287 bits (736), Expect = 7e-95
Identities = 83/214 (38%), Positives = 131/214 (61%), Gaps = 3/214 (1%)
Query: 106 PDCPTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGI 165
F +E AL LR+G+ V+V++DE+ + EG+++ A + +A ++HGSGI
Sbjct: 6 LSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGI 65
Query: 166 VSVGMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSS 225
V + + E+ ++L+LP+M N + FT+T++A G TTGVSA+DR TV A +
Sbjct: 66 VCLCITEDRRKQLDLPMMVEN--NTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIA 123
Query: 226 PDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSM 285
+KP + RPGHVFPL+ + GGVL R GHTEA++DL+ LAG P VL + + +DG+M
Sbjct: 124 DGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTN-DDGTM 182
Query: 286 SSLPSLRKLALEHSIPISSIIDLIRYRRKRETIV 319
+ P + A +H++ + +I DL+ YR+ E
Sbjct: 183 ARAPECIEFANKHNMALVTIEDLVAYRQAHERKA 216
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesi antimicrobial target, structure-based
design, isomerase; 0.98A {Magnaporthe grisea} SCOP:
d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Length = 233
Score = 286 bits (733), Expect = 2e-94
Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 13/226 (5%)
Query: 109 PTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSV 168
P F +I + + G+FV+V++D + + E +L++AA + +AFMV+H SG++
Sbjct: 8 PKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICA 67
Query: 169 GMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAK-FGTTTGVSASDRAKTVLALSSPD 227
+ E L+LP M N D +T++VDA+ TTTG+SA DRA L++PD
Sbjct: 68 PLTPERTTALDLPQMV--THNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPD 125
Query: 228 SKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVD-------- 279
++P +FRRPGHVFPL+ GGV R GHTEA V+L LAG PV+V+S +VD
Sbjct: 126 AQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGR 185
Query: 280 --PEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTA 323
M A + + +I D+I + K E +E
Sbjct: 186 AVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLETNG 231
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A
{Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB:
1pvy_A* 1pvw_A
Length = 227
Score = 259 bits (665), Expect = 3e-84
Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 114 SSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEE 173
+++E+A+ L++G+ ++V + + + E ++V+A+ +P H+ M K G++ + +
Sbjct: 2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPD 61
Query: 174 DLQRLNLPLM----------------SPEAENEDSSAPTFTITVDAKFGTTTGVSASDRA 217
+L +P M + +F+IT++ + T TG++ +DRA
Sbjct: 62 ICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRA 120
Query: 218 KTVLALSSP------DSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271
T+ L+ + + FR PG V L+ G V R GHTE +V L LA L P+
Sbjct: 121 FTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPI 180
Query: 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316
+ + ++ +DG+ S ++ A +H++ S ++I Y +
Sbjct: 181 TTICEMMG-DDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKY 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 3e-10
Identities = 77/492 (15%), Positives = 143/492 (29%), Gaps = 119/492 (24%)
Query: 68 NGSLLGDFDESVSAPFGTVDAE------ITPETIDFFVSDAEGDPDCPT---------EG 112
+L F+++ F D + ++ E ID + D T +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRLFWTLLSKQ 75
Query: 113 FSSIEQALNTLRQGKFVIVVE---DENGDVEGNLVMAASLTSPRH--VAFMVKHGSGIVS 167
+++ + + + + ++ E M + K+ VS
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VS 132
Query: 168 VGMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPD 227
+ + +L L+ E A + +D G+ G KT +AL
Sbjct: 133 ---RLQPYLKLRQALL------ELRPAKN--VLIDGVLGS--G-------KTWVALDVCL 172
Query: 228 SKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSS 287
S + +F L +N S + + L + L +DP S S
Sbjct: 173 SYKVQCKMDFKIFWLNLKN----------CNSPETV----LEMLQKLLYQIDPNWTSRS- 217
Query: 288 LPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRL-------PTKWGLFQAYC-- 338
+HS I I I+ +R + L W F C
Sbjct: 218 ---------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 339 -----YRSKLD-----GTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDC-GNQL 387
++ D T H+++ +M D + + + L R N
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 388 DLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAV-DARE 446
L++ I E +R N + D + IE L V + E
Sbjct: 329 RLSI-IAES--------IR---------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 447 YGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEE-NKRYLETKR 505
Y +++ L V + P + L VI ++ + + +K L K+
Sbjct: 371 Y----RKMFDRLSV--FPPSAHIPTILLSL--IWFDVIKSDVMV--VVNKLHKYSLVEKQ 420
Query: 506 TKMGHIYGSDLQ 517
K I +
Sbjct: 421 PKESTISIPSIY 432
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 3e-10
Identities = 95/557 (17%), Positives = 167/557 (29%), Gaps = 191/557 (34%)
Query: 73 GDFDESVSAP-----FGTV--D--AEITPETIDFFVSDAEGDPDCPTE------GFSSIE 117
G + + P + + +I PE + F +D E P P E G+ +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE--PTTPAELVGKFLGY--VS 69
Query: 118 QALNTLRQGKF-----VIVVEDENGDVEGNLV--MAASLTSPRHVAFMVKHGSGIVS--- 167
+ + G+F + + E EN +EGN + +AA L +VK I +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT-LVKTKELIKNYIT 128
Query: 168 --VGMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSS 225
+ K ++ N L A + +A I FG G +D
Sbjct: 129 ARIMAKRPFDKKSNSALF--RAV-GEGNAQLVAI-----FG---GQGNTD---DYF---- 170
Query: 226 PDSKPENFRR-----PGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDP 280
E R V L + L T + + GLN + L +P
Sbjct: 171 ----EE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE---NP 222
Query: 281 EDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYR 340
+ P L SIPIS LI G+ Q Y
Sbjct: 223 S-----NTPDKDYLL---SIPIS--CPLI----------------------GVIQLAHYV 250
Query: 341 --SKLDGTDH---VAVVKGNMGNGQDVLV-RVHSECLTGDIFGSARCDCGNQLDLAMQII 394
+KL G + +KG G+ Q ++ +E + + F + + A+ ++
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS-------VRKAITVL 303
Query: 395 EKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELG-------LAVDAREY 447
G +R +E AY ++ ++E L++
Sbjct: 304 FFIG------VRCYE-----------AYPNTSLPPSILEDSLENNEGVPSPMLSIS---- 342
Query: 448 GIGAQQILRDLGVRTMRL---------MTNNPAKFIGLKG-----YGL--------AVIG 485
+ +Q+ + L + N + + G YGL A G
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSG 401
Query: 486 ----RVP----------------------ILTPITEENKRYLETKRTKMGHIYGSDLQGP 519
R+P +L P ++ + L D+Q P
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS---FNAKDIQIP 458
Query: 520 LFGSTVN--NIESQEGE 534
++ T + ++ G
Sbjct: 459 VY-DTFDGSDLRVLSGS 474
Score = 51.6 bits (123), Expect = 6e-07
Identities = 79/528 (14%), Positives = 149/528 (28%), Gaps = 184/528 (34%)
Query: 59 DDSFLKGNENGSLLGDFDESVSAPFGTVDAEITPETIDFFVSDAEGDPDCPTEGFSSIEQ 118
++ +L+GN+ +L + I ++ + + S++ +
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIK----NYITARIMAKRPFDKKSNSALFR 147
Query: 119 ALNTLR---------QGK----FVIVVEDE--------NGDVEGNLVMAASL---TSPRH 154
A+ QG F +E + V + +A
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYF-----EELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 155 VAFMVKHGSGIVSVGMKEEDLQR-LNLPLMSPEAENEDS---SAPTFTIT------VDAK 204
+ G+ ++ L P +P+ + S S P + V AK
Sbjct: 203 LDAEKVFTQGL--------NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 205 -FGTTTG------VSASDRAKTVL---ALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAG 254
G T G A+ ++ ++ A++ DS E+F + + +R+A
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESF----------FVS---VRKA- 299
Query: 255 HTEASVDLLVLAGLN----------PVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISS 304
+ +L G+ P S+L ++ +G S + S+ L E
Sbjct: 300 -----ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ------ 348
Query: 305 IIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGN--------- 355
+ D + ++ IS L +G ++ VV G
Sbjct: 349 VQDYVNKTNSHLPAGKQVEIS-------LV---------NGAKNL-VVSGPPQSLYGLNL 391
Query: 356 --------MGNGQD-----------------VLVRVHSECLTG--DIFGSARCDCGNQLD 388
G Q V HS L D+ D
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI---------NKD 442
Query: 389 LAMQIIEKAGK--GVVVY-------LRGHEGRGIGLGHKLRAYNLQDQGH--DTVQAN-- 435
L + K + VY LR G + ++ ++ T Q
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS---ISERIVDCIIRLPVKWETTTQFKAT 499
Query: 436 --IELGLAVDAREYGIGA--QQILRDLGVRTMR--LMTNNPAKFIGLK 477
++ G + G+G + GVR + + NP G K
Sbjct: 500 HILDFGPGGAS---GLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 40.0 bits (93), Expect = 0.002
Identities = 47/283 (16%), Positives = 88/283 (31%), Gaps = 85/283 (30%)
Query: 283 GS----M-----SSLPSLRKL---ALEHSIPIS--SIIDLIRYRRKRETIVERTAISRLP 328
GS M + + + + A H SI+D++ TI +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 329 TKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLD 388
+ + A + + +DG + + E T F S + L
Sbjct: 1685 RE--NYSAMIFETIVDGKLKTEKIFKEIN-----------EHSTSYTFRSEK----GLLS 1727
Query: 389 L------AMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAV 442
A+ ++EKA L+ +G+ A GH LG
Sbjct: 1728 ATQFTQPALTLMEKA---AFEDLK---SKGLIPADATFA------GH-------SLG--- 1765
Query: 443 DAREYG--------IGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPIT 494
EY + + ++ + R M + P +G YG+ I + +
Sbjct: 1766 ---EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 495 EENKRYL-ETKRTKMGHIYGSDLQGPLFGSTVN-NIESQEGEQ 535
+E +Y+ E + G + ++ VN N+ E +Q
Sbjct: 1823 QEALQYVVERVGKRTGWL----VE------IVNYNV---ENQQ 1852
Score = 38.1 bits (88), Expect = 0.008
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 51/128 (39%)
Query: 54 AGNVSDDSFLKGNENGSLLGDFDESVSAPFGTVDAEITPETIDFFVSDAEGDPDCPTEGF 113
G + D+ G+ SL G++ +A S A
Sbjct: 1750 KGLIPADATFAGH---SL-GEY----AA----------------LASLA---------DV 1776
Query: 114 SSIEQALNTLRQ-GKFV--IVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGM 170
SIE + + G + V DE G N M A + G V+
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELG--RSNYGMIA-----------INPGR--VAASF 1821
Query: 171 KEEDLQRL 178
+E LQ +
Sbjct: 1822 SQEALQYV 1829
Score = 35.8 bits (82), Expect = 0.044
Identities = 52/296 (17%), Positives = 81/296 (27%), Gaps = 104/296 (35%)
Query: 164 GIVSVGMKEEDLQRLNLPLMSP-------EAENEDSSAPTFTIT---------VDAKFGT 207
G GM + + S A+N F+I + FG
Sbjct: 1625 GSQEQGMGMDLYKT------SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 208 TTG---------------VSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRR 252
G V + + + + S FR G+L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK----------GLLSA 1728
Query: 253 AGHTE----ASVDLLVLAGLNPVSVL-SAVVDPEDGSMS--SLP--SLRKLALEH---SI 300
T+ A L L L S + P D + + SL + AL +
Sbjct: 1729 ---TQFTQPA----LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA----ALASLADVM 1777
Query: 301 PISSIIDLIRYR-RKRETIVERTAISR--------LPTKWGL------FQAYCYRSKLDG 345
I S+++++ YR + V R + R P + Q R
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 346 TDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIE--KAGK 399
V +V N+ N Q V GD+ A LD ++ K K
Sbjct: 1838 GWLVEIVNYNVENQQYV--------AAGDL--RA-------LDTVTNVLNFIKLQK 1876
Score = 33.1 bits (75), Expect = 0.32
Identities = 46/255 (18%), Positives = 70/255 (27%), Gaps = 71/255 (27%)
Query: 290 SLRKLAL-----EHSIPISSIIDLIRYRRKRE----TIVERT---AISRLPTK----WGL 333
S R L L EH + + + + +E + E T A PT G
Sbjct: 5 STRPLTLSHGSLEHVLLVPTAS-FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 334 FQAYC--YRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTG-DIFGSARCDCGNQLDLA 390
F Y V+ L + L G DI A +L
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLN-------LCLTEFENCYLEGNDIHALAA-----KLLQE 111
Query: 391 MQIIEKAGKGVV-VYL--RGHEGRGIGLGHK---LRAYNLQDQGHDTV------QANI-- 436
K ++ Y+ R R RA +G+ + Q N
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA---VGEGNAQLVAIFGGQGNTDD 168
Query: 437 ---ELGLAVDARE-YGIGAQQILRDLGVRTM--RLMT--NNPAKFIGLKGYGLAVIG--R 486
EL R+ Y ++ DL ++ L + GL ++
Sbjct: 169 YFEEL------RDLYQTY-HVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 487 VPILTPITEENKRYL 501
P TP + YL
Sbjct: 221 NPSNTPDKD----YL 231
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.001
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 11/36 (30%)
Query: 171 KEEDLQRL--NLPLMSPEAENEDSSAPTFTI--TVD 202
K+ L++L +L L + + SAP I T++
Sbjct: 19 KQA-LKKLQASLKLYADD------SAPALAIKATME 47
Score = 30.3 bits (67), Expect = 0.95
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 216 RAKTVLALSSPDSKP 230
+ + L L + DS P
Sbjct: 24 KLQASLKLYADDSAP 38
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 34.8 bits (80), Expect = 0.044
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 249 VLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSII-- 306
V+ S++++ G VL +D ++ + +++++ ++ + SII
Sbjct: 126 VITAGTAIRESMEIIQAHGATLAGVL-ISLDRQERGRGEISAIQEVERDYGCKVISIITL 184
Query: 307 -DLIRYRRKRETIVE 320
DLI Y ++ + E
Sbjct: 185 KDLIAYLEEKPDMAE 199
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 34.4 bits (79), Expect = 0.069
Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 249 VLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSII-- 306
V+ S + L + V+ ++ E S + + +K++ + +IP+ ++
Sbjct: 145 VMTAGTAFYESYNKLKIINAKIAGVVLSIDRQEKAKDSDISATKKISQDFNIPVLAVTNF 204
Query: 307 -DLIRYRRKRETIVERTAISRLPTKWG 332
+ Y ++ + K+G
Sbjct: 205 ESIFEYVKENLDETMIDKFKQYRQKYG 231
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 33.3 bits (76), Expect = 0.12
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 249 VLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSII-- 306
V+ S++L+ + VL +D ++ L +++++ + + SI+
Sbjct: 151 VITAGTAIRESMELIQANKADLAGVL-VAIDRQEKGKGELSAIQEVERDFGCAVISIVSL 209
Query: 307 -DLIRYRRKRETIVE 320
DLI Y ++ E
Sbjct: 210 TDLITYLEQQGNNTE 224
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 29.3 bits (66), Expect = 3.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 464 RLMTNNPAKFIGLKGYG 480
R +T++ A F+ L G G
Sbjct: 330 RPLTSSVAGFLNLTGKG 346
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 29.6 bits (67), Expect = 3.3
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 21/70 (30%)
Query: 119 ALNTLRQGKFVIVV-------------EDENGDVEGNLV-------MAASLTSPRHVAFM 158
ALN +G F + V + + GNL AASL PR +
Sbjct: 17 ALNIAEKG-FKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL 75
Query: 159 VKHGSGIVSV 168
V+ G+ S
Sbjct: 76 VQAGAATDST 85
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 29.3 bits (65), Expect = 3.4
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 263 LVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSI 305
L + + L E + L LR L + S + +
Sbjct: 36 LYIENQQHLQHL------ELRDLRGLGELRNLTIVKS-GLRFV 71
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 29.1 bits (66), Expect = 3.8
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 145 MAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSP 185
SL +PR + MVK G+G + + L P +
Sbjct: 72 FVESLETPRRILLMVKAGAGTDAA------IDSL-KPYLDK 105
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia
coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A
2btg_A 2bth_A 2cyu_A
Length = 51
Score = 26.2 bits (58), Expect = 3.8
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 276 AVVDPEDGSMSSLPSLRKLALEHSIPISSI 305
A ++ ++ S P++R+L EH++ S+I
Sbjct: 2 ASLEEQNNDALS-PAIRRLLAEHNLDASAI 30
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC,
substrate binding P structural genomics, protein
structure initiative; 2.00A {Aeropyrum pernix}
Length = 391
Score = 29.0 bits (65), Expect = 4.2
Identities = 5/72 (6%), Positives = 15/72 (20%), Gaps = 8/72 (11%)
Query: 127 KFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPE 186
+ D + V ++ G+ + + + +S
Sbjct: 49 NINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIGWGTADTEKLSDQ--VDTDKITYISA- 105
Query: 187 AENEDSSAPTFT 198
S +
Sbjct: 106 -----SYSAKLL 112
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 28.6 bits (63), Expect = 6.2
Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 13/97 (13%)
Query: 406 RGHEGR-----GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQQILRDLGV 460
+G + G R Y L A + ++ G+ + I
Sbjct: 263 KGLQKHITLSLDAGRILYQRNYGLTKGKQTFGLAYLFDRFLPLLKQVGVSKEAIFD---- 318
Query: 461 RTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEEN 497
++ NNP + + +V ++
Sbjct: 319 ----ILVNNPKRVLAFDEKRNFDPLKVSKEVLELKKE 351
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 28.2 bits (63), Expect = 6.3
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 17/58 (29%)
Query: 236 PGHVFPLKYRNGGV-----LRRAGH------TEASVDLLVLAGLNPVSVLSAVVDPED 282
P VF L R AGH + ++ GL V+ +
Sbjct: 11 PATVFAL------APLATAARNAGHQVVMAANQDMGPVVTGVGLPAVATTDLPIRHFI 62
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 28.4 bits (63), Expect = 6.4
Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 27/238 (11%)
Query: 248 GVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIID 307
G+L EA ++ + G + V + + + SL LA ++ I D
Sbjct: 162 GILSYPN-GEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCD 220
Query: 308 LIRYRRKR--ETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVR 365
I + R ET+ + ++ + + + +
Sbjct: 221 EIDDEQSRFVETVAALA--HHEGMGARVTASHTTA--MHSYNGAYTSRLFRLLKMSGINF 276
Query: 366 VHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQ 425
V +I R D + ++ E G+ V GH +
Sbjct: 277 VA--NPLVNIHLQGRFDTYPKRRGITRVKEMLESGINV----------CFGHD----GVF 320
Query: 426 DQGHDTVQANIELGLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAV 483
D + AN+ L + + + D + L+T++ A+ + L+ YG+A
Sbjct: 321 DPWYPLGTANMLQVLHMGLHVCQLMGYGQINDG----LNLITHHSARTLNLQDYGIAA 374
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 28.5 bits (63), Expect = 7.2
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 487 VPILTP---ITEENKRYLETKRTKMGHI--YGSDLQG 518
V + P +E +Y + + + + ++QG
Sbjct: 664 VFCVAPGEKWSETAVKYFTILQDGINNFPGFAPEIQG 700
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.393
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,310,897
Number of extensions: 535438
Number of successful extensions: 1338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 37
Length of query: 538
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 440
Effective length of database: 3,965,535
Effective search space: 1744835400
Effective search space used: 1744835400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)