RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009309
(538 letters)
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 198 bits (505), Expect = 2e-61
Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 2/202 (0%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
F+ IE+AL + G+F+IV++DE+ + EG+L+MAA L + +AF+V++ SG V V + E
Sbjct: 3 FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSE 62
Query: 173 EDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPEN 232
E +L LP M D +TIT D GTTTG+SA DRA T +L++P+SKP++
Sbjct: 63 ERANQLELPPMLAN--RSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQD 120
Query: 233 FRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLR 292
F +PGH+ PL+ G + +R GHTEA+V L LAGL P V+ +V EDG M L
Sbjct: 121 FIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCI 180
Query: 293 KLALEHSIPISSIIDLIRYRRK 314
+ +H I I +I L+ Y K
Sbjct: 181 QFGKKHGIKIININQLVEYISK 202
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 195 bits (498), Expect = 3e-60
Identities = 83/204 (40%), Positives = 131/204 (64%), Gaps = 3/204 (1%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
F +E AL LR+G+ V+V++DE+ + EG+++ A + +A ++HGSGIV + + E
Sbjct: 9 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68
Query: 173 EDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPEN 232
+ ++L+LP+M N + FT+T++A G TTGVSA+DR TV A + +KP +
Sbjct: 69 DRRKQLDLPMMVE--NNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 126
Query: 233 FRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLR 292
RPGHVFPL+ + GGVL R GHTEA++DL+ LAG P VL + + +DG+M+ P
Sbjct: 127 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTN-DDGTMARAPECI 185
Query: 293 KLALEHSIPISSIIDLIRYRRKRE 316
+ A +H++ + +I DL+ YR+ E
Sbjct: 186 EFANKHNMALVTIEDLVAYRQAHE 209
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 192 bits (490), Expect = 6e-59
Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 11/214 (5%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
F +I + + G+FV+V++D + + E +L++AA + +AFMV+H SG++ +
Sbjct: 1 FDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTP 60
Query: 173 EDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPEN 232
E L+LP M + +A T ++ + TTTG+SA DRA L++PD++P +
Sbjct: 61 ERTTALDLPQMVTHNADPRGTAYTVSVDAEHP-STTTGISAHDRALACRMLAAPDAQPSH 119
Query: 233 FRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPE----------D 282
FRRPGHVFPL+ GGV R GHTEA V+L LAG PV+V+S +VD
Sbjct: 120 FRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAA 179
Query: 283 GSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316
M A + + +I D+I + K E
Sbjct: 180 PGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTE 213
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 192 bits (488), Expect = 1e-58
Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 24/219 (10%)
Query: 115 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEED 174
++E+A+ L++G+ ++V + + + E ++V+A+ +P H+ M K G++ + +
Sbjct: 2 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 61
Query: 175 LQRLNLPLMSPEAE----------------NEDSSAPTFTITVDAKFGTTTGVSASDRAK 218
+L +P M E +F+IT++ + T TG++ +DRA
Sbjct: 62 CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAF 120
Query: 219 TVLAL------SSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVS 272
T+ L + + FR PG V L+ G V R GHTE +V L LA L P++
Sbjct: 121 TIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPIT 180
Query: 273 VLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRY 311
+ ++ +DG+ S ++ A +H++ S ++I Y
Sbjct: 181 TICEMMG-DDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 190 bits (483), Expect = 1e-58
Identities = 82/172 (47%), Positives = 114/172 (66%), Gaps = 2/172 (1%)
Query: 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGS 378
++R A ++LPT WG F + G DHVA+V G++ VL RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 379 ARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIEL 438
RCDCG QL+ A+ I + G+G+++Y R EGR IGL +K+RAY LQDQG+DTV+AN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 439 GLAVDAREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPIL 490
G A D R++ + A + + LGV +RL+TNNP K L G+ ++ RVP++
Sbjct: 122 GFAADERDFTLCA-DMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLI 172
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Archaeon
Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Length = 176
Score = 29.1 bits (64), Expect = 0.93
Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 11/170 (6%)
Query: 115 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHG-SGIVSVGMKEE 173
+E+AL ++ K +E+ + + A + SP V + G
Sbjct: 4 PLEKALEVVQSFKISPGIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRAEDTF 63
Query: 174 DLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENF 233
+ + P F + +TG A V+ +
Sbjct: 64 MASEASPVRLKVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQFEDVERVNGEI 123
Query: 234 RRPGHVFPLK--------YRNGGVLRRAGHTEASVDLLVLA--GLNPVSV 273
+P G +L + G +L+ G+N V V
Sbjct: 124 LIYKPAYPGLGVMKKGIDIEKGRLLVKKGERLGFKQTALLSAVGINKVKV 173
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Length = 312
Score = 27.3 bits (60), Expect = 4.3
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 453 QILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPI 489
+ + + MRL N A L+ + V+ VP
Sbjct: 20 SLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPR 56
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 27.3 bits (60), Expect = 5.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 453 QILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPI 489
+ + G+++MRL N A + G G+ V+ P
Sbjct: 20 SMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPN 56
>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837
{Enterococcus faecalis [TaxId: 1351]}
Length = 267
Score = 26.8 bits (57), Expect = 5.8
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 444 AREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYG 480
R G +I+ +T PA+ L G
Sbjct: 239 LRVVGYDWPEIIE--------KVTKAPAENFHLTQKG 267
>d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri
[TaxId: 623]}
Length = 112
Score = 25.9 bits (57), Expect = 6.1
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 97 FFVSDAEGDPDCP--TEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRH 154
V++ +G E + E ++N L + K + + D+ D ++V A+ T
Sbjct: 28 LTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTG--- 84
Query: 155 VAFMVKHGSGIVSV 168
K G G + V
Sbjct: 85 -----KIGDGKIFV 93
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 26.9 bits (59), Expect = 6.6
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 453 QILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPI 489
Q+ R G+ MR+ + L+ G+ +I +
Sbjct: 20 QLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGN 56
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 209
Score = 26.3 bits (57), Expect = 8.0
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAAS 148
F+ +E+ LN +GK ++V V A+
Sbjct: 16 FAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATAN 51
>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 26.7 bits (57), Expect = 8.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 444 AREYGIGAQQILRDLGVRTMRLMTNNPAKFIGLKGYG 480
++Y LR +T++ A F+ L G G
Sbjct: 256 VKDYDFSISDALR--------PLTSSVAGFLNLTGKG 284
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.393
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,956,162
Number of extensions: 93320
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 15
Length of query: 538
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 448
Effective length of database: 1,171,896
Effective search space: 525009408
Effective search space used: 525009408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)