BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009310
(538 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359480765|ref|XP_002273522.2| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 543
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/544 (74%), Positives = 458/544 (84%), Gaps = 7/544 (1%)
Query: 1 MASIALSASAALLPLKRNSG---AWSKLFPFSSKSY---LSFKTCRKNRFISFAASNSSG 54
MA +ALSAS L R SG W LFP SS+ +S +++ SF AS ++
Sbjct: 1 MAQMALSASPTLTLFNRVSGRSKQWGMLFPGSSRKLAINMSILMNFQSKGFSFVASGATQ 60
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + E E+AS+ YTWPDKKKPR+CILGGGFGGLYTALRLESLVW +DKKPQVLLV
Sbjct: 61 WNGGVAELVEGEAASRPYTWPDKKKPRVCILGGGFGGLYTALRLESLVWPEDKKPQVLLV 120
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSERFVFKPMLYELL+GEVDAWEIAPRF+DLLANTGVQFF+DRVK+L PSDHLG+NGP
Sbjct: 121 DQSERFVFKPMLYELLTGEVDAWEIAPRFSDLLANTGVQFFQDRVKVLHPSDHLGMNGPT 180
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GGTV LESGL++EYDWLVL+LGAE KLDVVPGAAEFA PFSTLEDACRVD +L L
Sbjct: 181 VSSCGGTVHLESGLVIEYDWLVLALGAEAKLDVVPGAAEFALPFSTLEDACRVDNRLRTL 240
Query: 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAA 294
ER+ FG+D IRVAVVGCGYSGVELAATVSERL++KGIVQAINVETTICPT PGNREAA
Sbjct: 241 ERKRFGRDFPIRVAVVGCGYSGVELAATVSERLQDKGIVQAINVETTICPTAPPGNREAA 300
Query: 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354
LKVLS+R V+L+LG+FVRCIR+ E S KQ ESG + + AA+ +K ILELQPA +G
Sbjct: 301 LKVLSSRNVELLLGFFVRCIRKASISEVSEKQTESGTLLDAAAEHEPEKLILELQPAERG 360
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
L+SQI EADL+LWTVGSKP LP +E P H+LPLNARGQAETDETL VKGHPRIFA+G
Sbjct: 361 LQSQILEADLILWTVGSKPQLPQLE-PCEWPHELPLNARGQAETDETLRVKGHPRIFAVG 419
Query: 415 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
DSS+LRDS G+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA
Sbjct: 420 DSSSLRDSKGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAA 479
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKV 534
+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QS++ KV
Sbjct: 480 ISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVAAVQSSVIKV 539
Query: 535 LSSS 538
LS S
Sbjct: 540 LSGS 543
>gi|296082616|emb|CBI21621.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/544 (73%), Positives = 451/544 (82%), Gaps = 24/544 (4%)
Query: 1 MASIALSASAALLPLKRNSG---AWSKLFPFSSKSY---LSFKTCRKNRFISFAASNSSG 54
MA +ALSAS L R SG W LFP SS+ +S +++ SF AS ++
Sbjct: 1 MAQMALSASPTLTLFNRVSGRSKQWGMLFPGSSRKLAINMSILMNFQSKGFSFVASGATQ 60
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + E E+AS+ YTWPDKKKPR+CILGGGFGGLYTALRLESLVW +DKKPQVLLV
Sbjct: 61 WNGGVAELVEGEAASRPYTWPDKKKPRVCILGGGFGGLYTALRLESLVWPEDKKPQVLLV 120
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSERFVFKPMLYELL+GEVDAWEIAPRF+DLLANTGVQFF+DRVK+L PSDHLG+NGP
Sbjct: 121 DQSERFVFKPMLYELLTGEVDAWEIAPRFSDLLANTGVQFFQDRVKVLHPSDHLGMNGPT 180
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GGTV LESGL++EYDWLVL+LGAE KLDVVPGAAEFA PFSTLEDACRVD +L L
Sbjct: 181 VSSCGGTVHLESGLVIEYDWLVLALGAEAKLDVVPGAAEFALPFSTLEDACRVDNRLRTL 240
Query: 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAA 294
ER+ FG+D IRVAVVGCGYSGVELAATVSERL++KGIVQAINVETTICPT PGNREAA
Sbjct: 241 ERKRFGRDFPIRVAVVGCGYSGVELAATVSERLQDKGIVQAINVETTICPTAPPGNREAA 300
Query: 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354
LKVLS+R V+L+LG+FVRCIR+ AS+ + E +K ILELQPA +G
Sbjct: 301 LKVLSSRNVELLLGFFVRCIRK-----ASISEHE------------PEKLILELQPAERG 343
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
L+SQI EADL+LWTVGSKP LP +E P H+LPLNARGQAETDETL VKGHPRIFA+G
Sbjct: 344 LQSQILEADLILWTVGSKPQLPQLE-PCEWPHELPLNARGQAETDETLRVKGHPRIFAVG 402
Query: 415 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
DSS+LRDS G+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA
Sbjct: 403 DSSSLRDSKGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAA 462
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKV 534
+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QS++ KV
Sbjct: 463 ISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVAAVQSSVIKV 522
Query: 535 LSSS 538
LS S
Sbjct: 523 LSGS 526
>gi|255574196|ref|XP_002528013.1| NADH dehydrogenase, putative [Ricinus communis]
gi|223532582|gb|EEF34369.1| NADH dehydrogenase, putative [Ricinus communis]
Length = 536
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/536 (73%), Positives = 449/536 (83%), Gaps = 2/536 (0%)
Query: 1 MASIALSASAALLPLKRNSGAWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLV 60
MA +ALS +A L+P+ R + KLFP + KS + + NR ++ G N +
Sbjct: 1 MAIMALSCTATLVPVNRIANRVHKLFPTAPKSSIRCQLF-SNRGFRLVGCSAIGGNQGVA 59
Query: 61 VTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120
S+ E+ + YTWPD KKPR+CILGGGFGGLYTALRLESLVW DDKKPQVLLVDQS F
Sbjct: 60 EISQSETRPRIYTWPDNKKPRVCILGGGFGGLYTALRLESLVWADDKKPQVLLVDQSAHF 119
Query: 121 VFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGG 180
VFKPMLYELLSGEVDAWEIAPRF+DLLANTGV F +D+VKLL PSDHLG NG + GG
Sbjct: 120 VFKPMLYELLSGEVDAWEIAPRFSDLLANTGVLFLQDKVKLLQPSDHLGKNGSSGSSCGG 179
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG 240
TVLL SGL++EYDWLVL+LGAE +LDVVPGAA+ AFPFSTLEDACRV+ KL+ LERRNFG
Sbjct: 180 TVLLASGLLIEYDWLVLALGAEARLDVVPGAAKCAFPFSTLEDACRVNHKLNALERRNFG 239
Query: 241 KDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
KDSLIRVAVVGCGYSGVELAAT+SERL+E+G++QAIN++T ICP PGNREAAL+VLS+
Sbjct: 240 KDSLIRVAVVGCGYSGVELAATISERLKERGVIQAINIDTNICPAAPPGNREAALRVLSS 299
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
RKVQL+LGYFVRCI+ + E S E A NIA++ +S+KY LELQPA +GL+SQI
Sbjct: 300 RKVQLLLGYFVRCIQIANDLETSAMSAEVDASENIASEHSSEKYFLELQPAERGLQSQIL 359
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
EADLVLWTVGSKPLL +E + + +LPLNARGQAETDETL VKGHPRIFALGDSSALR
Sbjct: 360 EADLVLWTVGSKPLLSQLE-SDYQSRELPLNARGQAETDETLRVKGHPRIFALGDSSALR 418
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
DSSGR LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA+SPSF+
Sbjct: 419 DSSGRLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAALSPSFI 478
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 536
EG+TL+GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QSTL KVLS
Sbjct: 479 EGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVASMQSTLAKVLS 534
>gi|224093652|ref|XP_002309949.1| predicted protein [Populus trichocarpa]
gi|222852852|gb|EEE90399.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/529 (72%), Positives = 440/529 (83%), Gaps = 29/529 (5%)
Query: 18 NSGAWSKLFPFSSKSYLSFKTCRKNRFISF--------AASNSSGRNGDLVVTSEDESAS 69
N+ W+K+ +S S ++F + R I F AA++ S N D+ S+ E+
Sbjct: 46 NANRWNKVSSRTSHS-INFSLLFEKRGIGFRNGIVAVAAAASPSPVNEDI---SQKETPQ 101
Query: 70 QTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
+ YTWPD KKP++CILGGGFGGLYTALRLESL+W DDKKPQVLLVDQSERFVFKP+LYEL
Sbjct: 102 RIYTWPDNKKPKVCILGGGFGGLYTALRLESLIWADDKKPQVLLVDQSERFVFKPLLYEL 161
Query: 130 LSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
LSGEVDAWEIAPRF++LLANTG+QF +DRVK+L P+DHLG+NG GGTV+LESGL+
Sbjct: 162 LSGEVDAWEIAPRFSELLANTGIQFLRDRVKMLHPADHLGMNGSTGSCSGGTVVLESGLL 221
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAV 249
+EYDWLVLSLGA KLD VPGAAEFAFPFSTLEDAC+VD KL ELERR FGKDSLIRVAV
Sbjct: 222 IEYDWLVLSLGAGAKLDTVPGAAEFAFPFSTLEDACKVDNKLKELERRKFGKDSLIRVAV 281
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
VGCGYSGVELAATVSERL+++G+VQAINV TTI PT PGNREAALKVLS+RKVQL+LGY
Sbjct: 282 VGCGYSGVELAATVSERLQDRGLVQAINVNTTILPTAPPGNREAALKVLSSRKVQLLLGY 341
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
FVRCIR+ + E + S+KYILELQPA +GL+SQI EADLVLWTV
Sbjct: 342 FVRCIRKESDLE----------------EHGSEKYILELQPAERGLQSQILEADLVLWTV 385
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
GS+P LP +E P ++ H+LPLN RGQAETDETL VKGHPRIFALGDSSALRD +GR LPA
Sbjct: 386 GSQPPLPQLE-PYDKTHELPLNGRGQAETDETLRVKGHPRIFALGDSSALRDMNGRILPA 444
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 489
TAQVAFQQADF GWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA+SPSF+EG+TL+GP+
Sbjct: 445 TAQVAFQQADFTGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAALSPSFIEGLTLEGPV 504
Query: 490 GHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
GH+ARK+AYLIRLPTDEHRLKVG+SWLTKSA+DSVA +QSTL+KVLS S
Sbjct: 505 GHAARKIAYLIRLPTDEHRLKVGISWLTKSAVDSVASIQSTLSKVLSGS 553
>gi|147790504|emb|CAN61189.1| hypothetical protein VITISV_003541 [Vitis vinifera]
Length = 504
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/541 (69%), Positives = 426/541 (78%), Gaps = 40/541 (7%)
Query: 1 MASIALSASAALLPLKRNSGAWSKLFPFSSKSY---LSFKTCRKNRFISFAASNSSGRNG 57
MA +ALSAS L S W LFP SS+ +S +++ SF AS ++ NG
Sbjct: 1 MAQMALSASPTLTLFNSRSKQWGMLFPGSSRKLAINMSILMNFQSKGFSFVASGATQWNG 60
Query: 58 DLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117
+ E E+AS+ YTWPDKKKPR+CILGGGFGGLYTALRLESLVW +DKKPQVLLVDQS
Sbjct: 61 GVAELVEGEAASRPYTWPDKKKPRVCILGGGFGGLYTALRLESLVWPEDKKPQVLLVDQS 120
Query: 118 ERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACT 177
ERFVFKPMLYELL+GEVDAWEIAPRF+DLLANTGVQFF+DRVK+L PSDHLG+NGP +
Sbjct: 121 ERFVFKPMLYELLTGEVDAWEIAPRFSDLLANTGVQFFQDRVKVLHPSDHLGMNGPTVSS 180
Query: 178 HGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR 237
GGTV LESGL++EYDWLVL+LGAE KLDVVPGAAEFA PFSTLEDACRVD +L LER+
Sbjct: 181 CGGTVHLESGLVIEYDWLVLALGAEAKLDVVPGAAEFALPFSTLEDACRVDNRLRTLERK 240
Query: 238 NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKV 297
FG+D IRVAVVGCGYSGVELAATVSERL++KGIVQAINVETTICPT PGNREAALKV
Sbjct: 241 RFGRDFPIRVAVVGCGYSGVELAATVSERLQDKGIVQAINVETTICPTAPPGNREAALKV 300
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
LS+R V+L+LGYFVRCIR+ E S KQ ESG + + AA+ +K ILELQPA +GL+S
Sbjct: 301 LSSRNVELLLGYFVRCIRKASISEVSEKQTESGTLLDAAAEHEPEKLILELQPAERGLQS 360
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
QI EADL+LWT GHPRIFA+GDSS
Sbjct: 361 QILEADLILWT-------------------------------------GHPRIFAVGDSS 383
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
+LRDS G+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA+SP
Sbjct: 384 SLRDSKGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAISP 443
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 537
SF+EG+TL GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QS++ KVLS
Sbjct: 444 SFIEGLTLXGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVAAVQSSVIKVLSG 503
Query: 538 S 538
S
Sbjct: 504 S 504
>gi|356512870|ref|XP_003525138.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Glycine max]
Length = 544
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/551 (68%), Positives = 439/551 (79%), Gaps = 20/551 (3%)
Query: 1 MASIALSA--SAALLPLKRNSGAWSKLFPFSSKSY-----LSFKTCRKNRFISFAASNSS 53
M IAL+A S ++ R + WS L P +S + + RK + F AS +
Sbjct: 1 MLHIALAAPVSPTVVAFHRGAKQWSALIPNFRRSRGIGSSVFSSSLRKRLQLRFFASGEN 60
Query: 54 GRNGDLVV-TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVL 112
G NG ++ SE E + WPD KKPR+CILGGGFGGLYTALRLESL W DDKKPQ++
Sbjct: 61 GGNGGVLEEISEAEKEPTNFAWPDNKKPRVCILGGGFGGLYTALRLESLEWPDDKKPQIV 120
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLLANT VQFFKDRVK+L PSDH G+NG
Sbjct: 121 LVDQSERFVFKPMLYELLSGEVDEWEIAPRFSDLLANTSVQFFKDRVKVLNPSDHWGMNG 180
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232
A + GGTV LESGL++EYDWLVL+LGAE KLDVVPGA EFA PFSTLEDA +V+ KL+
Sbjct: 181 SKASSCGGTVHLESGLLIEYDWLVLALGAEAKLDVVPGAIEFAIPFSTLEDARKVNDKLT 240
Query: 233 ELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE 292
+LER+ FG D I VAVVGCGYSGVELAAT++ERL+ +GIV+AINVET ICP PGNRE
Sbjct: 241 KLERKTFGTDFQISVAVVGCGYSGVELAATLAERLQNRGIVRAINVETMICPNAPPGNRE 300
Query: 293 AALKVLSARKVQLVLGYFVRCIRRVGEFEAS-----VKQPESGAIPNIAADKNSDKYILE 347
ALKVLS+RKV+L+LGYFVRCIRR+ + E+S V + + +P+ +KYILE
Sbjct: 301 VALKVLSSRKVELLLGYFVRCIRRLSDLESSDPLTGVDENSTEVVPDF------EKYILE 354
Query: 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 407
LQPA +G++S+I EADLVLWTVG+KP LP +EP + +PLNARGQAETDETL VKGH
Sbjct: 355 LQPAERGMQSKIIEADLVLWTVGTKPPLPQLEPSDEPFV-IPLNARGQAETDETLRVKGH 413
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
PRIFALGDSSALRDS+GR LPATAQVAFQQADF GWNLWAAIN RPLLPFRFQNLGEMM
Sbjct: 414 PRIFALGDSSALRDSNGRILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMT 473
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALL 527
LGRNDAA+SPSF++G+TL+G IGH+ARK+AYLIRLPTDEHRLKVG+SWLTKSAIDSV+ L
Sbjct: 474 LGRNDAAISPSFIDGLTLEGSIGHTARKIAYLIRLPTDEHRLKVGISWLTKSAIDSVSSL 533
Query: 528 QSTLTKVLSSS 538
QSTL KVLS S
Sbjct: 534 QSTLYKVLSGS 544
>gi|449457355|ref|XP_004146414.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 542
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/546 (68%), Positives = 431/546 (78%), Gaps = 14/546 (2%)
Query: 1 MASIALSASAALLPLK--RNSGAWSKLFPFSSKSYLSFKTCR----KNRFISFAASNSSG 54
MA IA S S +L PL SG KLFP SS L +CR + + I A S+SS
Sbjct: 1 MAPIAFSLSVSLGPLNFAGASGGSGKLFPGSS-GRLGTNSCRFSSSRGKGIRCAVSSSSN 59
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + SE E A Y WPD KKPR+CILGGGFGGLYTALRLESL W D+KKPQV+LV
Sbjct: 60 NNGGVAEISESELAKHFYAWPDYKKPRVCILGGGFGGLYTALRLESLFWPDNKKPQVVLV 119
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSE FVFKPMLYELLSGEVDAWEIAPRF+DLLANT +QF +D+VKL+ P DH N P
Sbjct: 120 DQSEHFVFKPMLYELLSGEVDAWEIAPRFSDLLANTSIQFIQDKVKLVDPCDHYDANNPK 179
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GTV LESGL +EYDWLVL+LGAE KLD+VPGAAE+A PFSTL DA RVD +L L
Sbjct: 180 NPSCSGTVYLESGLHIEYDWLVLALGAEAKLDLVPGAAEYALPFSTLWDAQRVDSRLKIL 239
Query: 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAA 294
ER NF K SLIRVA+VGCGYSGVELAAT+SERL+++G+VQAINVET ICPT PGNREAA
Sbjct: 240 ERINFNKKSLIRVAIVGCGYSGVELAATISERLQDRGLVQAINVETMICPTAPPGNREAA 299
Query: 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVK---QPESGAIPNIAADKNSDKYILELQPA 351
LKVLS+R V+L+LGY VR I+RV + E S + +P G P++A + +Y LELQPA
Sbjct: 300 LKVLSSRNVELLLGYIVRSIQRVDDAETSEEANNRPSQGTQPDLA----TSRYRLELQPA 355
Query: 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 411
+G + +I EADLVLWTVGSK LLP +EP N LPLN RGQAETDETL V+GHPRIF
Sbjct: 356 ERGSQGRILEADLVLWTVGSKSLLPTLEPSKNYRKQLPLNGRGQAETDETLRVRGHPRIF 415
Query: 412 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
ALGDSSALRD +GRPLPATAQVAFQQADF GWNLWAAIN+R LLPFR+QNLGEMM LGRN
Sbjct: 416 ALGDSSALRDPNGRPLPATAQVAFQQADFVGWNLWAAINNRSLLPFRYQNLGEMMTLGRN 475
Query: 472 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 531
DA+VSPSF+EG+TL+GPIGH+ARK+AYLIRLPTDEHR+KVG+SWLTKSA+DS+A +Q+T
Sbjct: 476 DASVSPSFIEGLTLEGPIGHAARKIAYLIRLPTDEHRVKVGISWLTKSAVDSIATIQTTF 535
Query: 532 TKVLSS 537
T V +S
Sbjct: 536 TNVFTS 541
>gi|449480895|ref|XP_004156024.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 542
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/546 (68%), Positives = 432/546 (79%), Gaps = 14/546 (2%)
Query: 1 MASIALSASAALLPLK--RNSGAWSKLFPFSSKSYLSFKTCR----KNRFISFAASNSSG 54
MA IA S S +L PL +SG KLFP SS L +CR + + I A S+SS
Sbjct: 1 MAPIAFSLSVSLGPLNFAGSSGGSGKLFPGSS-GRLGTNSCRFSSSRGKGIRCAVSSSSN 59
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + SE E A Y WPD KKPR+CILGGGFGGLYTALRLESL W D+KKPQV+LV
Sbjct: 60 NNGGVAEISESELAKHFYAWPDYKKPRVCILGGGFGGLYTALRLESLFWPDNKKPQVVLV 119
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSE FVFKPMLYELLSGEVDAWEIAPRF+DLLANT +QF +D+VKL+ P DH N P
Sbjct: 120 DQSEHFVFKPMLYELLSGEVDAWEIAPRFSDLLANTSIQFIQDKVKLVDPCDHYDANNPK 179
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GTV LESGL +EYDWLVL+LGAE KLD+VPGAAE+A PFSTL DA RVD +L L
Sbjct: 180 NPSCSGTVYLESGLHIEYDWLVLALGAEAKLDLVPGAAEYALPFSTLWDAQRVDSRLKIL 239
Query: 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAA 294
ER NF K SLIRVA+VGCGYSGVELAAT+SERL+++G+VQAINVET ICPT PGNREAA
Sbjct: 240 ERINFNKKSLIRVAIVGCGYSGVELAATISERLQDRGLVQAINVETMICPTAPPGNREAA 299
Query: 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVK---QPESGAIPNIAADKNSDKYILELQPA 351
LKVLS+R V+L+LGY VR I+RV + E S + +P G P++A + +Y LELQPA
Sbjct: 300 LKVLSSRNVELLLGYIVRSIQRVDDAETSEEANNRPSQGTQPDLA----TSRYRLELQPA 355
Query: 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 411
+G + +I EADLVLWTVGSK LLP +EP N LPLN RGQAETDETL V+GHPRIF
Sbjct: 356 ERGSQGRILEADLVLWTVGSKSLLPTLEPSKNYRKQLPLNGRGQAETDETLRVRGHPRIF 415
Query: 412 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
ALGDSSALRD +GRPLPATAQVAFQQADF GWNLWAAIN+R LLPFR+QNLGEMM LGRN
Sbjct: 416 ALGDSSALRDPNGRPLPATAQVAFQQADFVGWNLWAAINNRSLLPFRYQNLGEMMTLGRN 475
Query: 472 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 531
DA+VSPSF+EG++L+GPIGH+ARK+AYLIRLPTDEHR+KVG+SWLTKSA+DS+A +Q+T
Sbjct: 476 DASVSPSFIEGLSLEGPIGHAARKIAYLIRLPTDEHRVKVGISWLTKSAVDSIATIQTTF 535
Query: 532 TKVLSS 537
T V +S
Sbjct: 536 TNVFTS 541
>gi|297810995|ref|XP_002873381.1| hypothetical protein ARALYDRAFT_908854 [Arabidopsis lyrata subsp.
lyrata]
gi|297319218|gb|EFH49640.1| hypothetical protein ARALYDRAFT_908854 [Arabidopsis lyrata subsp.
lyrata]
Length = 519
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/496 (70%), Positives = 404/496 (81%), Gaps = 26/496 (5%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N SG SE+E+A +TYTWPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNYSGT----TEISENETAPRTYTWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
DDKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PDDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG + GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSESSVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283
A RV+ KLS+LER+NF S I+VAVVGCGY+GVELAAT+SERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKDIL 284
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
+ GNREAA+KVL++RKVQL+LGY V+ I+R A+D D+
Sbjct: 285 TSAPNGNREAAMKVLTSRKVQLLLGYLVQSIKR-------------------ASDSEEDE 325
Query: 344 -YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 402
Y+LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 326 GYLLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETL 383
Query: 403 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 462
VKGHPRIFALGDSS+LRD +G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNL
Sbjct: 384 RVKGHPRIFALGDSSSLRDPNGKLLPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNL 443
Query: 463 GEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
GEMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW KSA+D
Sbjct: 444 GEMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVD 503
Query: 523 SVALLQSTLTKVLSSS 538
S+ALLQS LTKVLS S
Sbjct: 504 SIALLQSNLTKVLSGS 519
>gi|356527534|ref|XP_003532364.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase C1,
chloroplastic/mitochondrial-like [Glycine max]
Length = 576
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/542 (67%), Positives = 424/542 (78%), Gaps = 30/542 (5%)
Query: 10 AALLP-LKRNSGAWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLVVTSEDESA 68
+AL P +R+ GA S LF S + L RF FA+ + G G + SE E
Sbjct: 52 SALFPSFRRSRGAGSSLFASSLRKRLQL------RF--FASGENGGTGGAVEEISEAEKE 103
Query: 69 SQTYTWPDKK-----KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123
+ WPD K +PR+CILGGGFGGLYTALRLESL W DDKK Q++LVDQSE FVFK
Sbjct: 104 PTNFAWPDNKNYLIAEPRVCILGGGFGGLYTALRLESLEWPDDKKTQIVLVDQSECFVFK 163
Query: 124 PMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL 183
PMLYELLSGEVD WEIAP F+DLLANT VQFFKDRVK+L PSDH G+NG A + GGTV
Sbjct: 164 PMLYELLSGEVDKWEIAPPFSDLLANTSVQFFKDRVKVLNPSDHWGMNGSKASSCGGTVH 223
Query: 184 LESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDS 243
LESGL+VEYDWLVL+LGAE KLDVVPGA EFA PFS LEDA +V+ KL++LER+ FGKD
Sbjct: 224 LESGLLVEYDWLVLALGAESKLDVVPGAVEFAIPFSMLEDAPKVNDKLTKLERKTFGKDF 283
Query: 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
I VAV+GCGYSGVELAAT++E L+ +GIV+AINVET ICP PGNRE ALKVLS+RKV
Sbjct: 284 QISVAVIGCGYSGVELAATLAEXLQNRGIVRAINVETMICPNAQPGNREVALKVLSSRKV 343
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS-------DKYILELQPAIKGLE 356
+L+LGYFV CI+R+ E E+S AD+NS +KYILELQPA +G++
Sbjct: 344 ELLLGYFVCCIQRLSELESSDTL--------TGADENSTEVVPDFEKYILELQPAERGMQ 395
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
S+I EADLVLWT G+KP LP +EP + +PLNARGQAETDETL VKGHPRIFALGDS
Sbjct: 396 SKIVEADLVLWTAGTKPPLPQLEPSDVPFA-IPLNARGQAETDETLRVKGHPRIFALGDS 454
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
ALRDS+GR LPATAQVAFQQADF GWNLWAAIN RPLLPFRFQNLGEMM LGRNDAA+S
Sbjct: 455 FALRDSNGRILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAIS 514
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 536
PSF++G+TL+G +GH+ARK+AYLIRLPTDEHRLKVG+SWLTKSAIDSV+ LQSTL KV+S
Sbjct: 515 PSFIDGLTLEGSVGHTARKIAYLIRLPTDEHRLKVGISWLTKSAIDSVSSLQSTLYKVVS 574
Query: 537 SS 538
S
Sbjct: 575 GS 576
>gi|147641610|sp|Q8GXR9.2|DHNA_ARATH RecName: Full=NADH dehydrogenase C1, chloroplastic/mitochondrial;
Flags: Precursor
Length = 519
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/495 (69%), Positives = 401/495 (81%), Gaps = 24/495 (4%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283
A RV+ KLS+LER+NF S I+VAVVGCGY+GVELAAT+SERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 284
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 285 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 326
Query: 344 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 327 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 384
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
VKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 385 VKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 444
Query: 464 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 523
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW KSA+DS
Sbjct: 445 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVDS 504
Query: 524 VALLQSTLTKVLSSS 538
+ALLQS LTKVLS S
Sbjct: 505 IALLQSNLTKVLSGS 519
>gi|26451210|dbj|BAC42708.1| putative NADH dehydrogenase [Arabidopsis thaliana]
Length = 551
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/495 (69%), Positives = 400/495 (80%), Gaps = 24/495 (4%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283
A RV+ KLS+LER+NF S I+VAVVGCGY+GVELAAT+SERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 284
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 285 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 326
Query: 344 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 327 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 384
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
VKGHPRIFALGDSS+LRDS G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 385 VKGHPRIFALGDSSSLRDSHGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 444
Query: 464 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 523
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW KSA+DS
Sbjct: 445 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVDS 504
Query: 524 VALLQSTLTKVLSSS 538
+ALLQS LTKVLS S
Sbjct: 505 IALLQSNLTKVLSGS 519
>gi|240256269|ref|NP_568205.6| NAD(P)H dehydrogenase C1 [Arabidopsis thaliana]
gi|332003960|gb|AED91343.1| NAD(P)H dehydrogenase C1 [Arabidopsis thaliana]
Length = 519
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/495 (69%), Positives = 399/495 (80%), Gaps = 24/495 (4%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283
A RV+ KLS+LER+NF S I+VAVVGCGY+GVELAAT+SERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 284
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 285 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 326
Query: 344 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 327 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 384
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
VKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 385 VKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 444
Query: 464 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 523
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR V +SW KSA+DS
Sbjct: 445 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFMVRISWFAKSAVDS 504
Query: 524 VALLQSTLTKVLSSS 538
+ALLQS LTKVLS S
Sbjct: 505 IALLQSNLTKVLSGS 519
>gi|13548332|emb|CAC35879.1| NADH dehydrogenase-like protein [Arabidopsis thaliana]
Length = 513
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/495 (68%), Positives = 392/495 (79%), Gaps = 30/495 (6%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLES LVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESAR------LVLALGAESKLDVVPGAMELAFPFYTLED 218
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283
A RV+ KLS+LER+NF S I+VAVVGCGY+GVELAAT+SERL+++GIVQ+INV I
Sbjct: 219 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 278
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 279 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 320
Query: 344 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 321 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 378
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
VKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 379 VKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 438
Query: 464 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 523
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTD+H V +S L KSA+DS
Sbjct: 439 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDQHLFMVRISCLAKSAVDS 498
Query: 524 VALLQSTLTKVLSSS 538
+ALLQS LTKVLS S
Sbjct: 499 IALLQSNLTKVLSGS 513
>gi|115467068|ref|NP_001057133.1| Os06g0214900 [Oryza sativa Japonica Group]
gi|51090389|dbj|BAD35311.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
gi|51091939|dbj|BAD35208.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
gi|113595173|dbj|BAF19047.1| Os06g0214900 [Oryza sativa Japonica Group]
Length = 548
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/479 (66%), Positives = 392/479 (81%), Gaps = 11/479 (2%)
Query: 62 TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
+S DE Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +DKKPQV+LVDQS+RFV
Sbjct: 77 SSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPNDKKPQVMLVDQSDRFV 136
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
FKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDH + +CT GG
Sbjct: 137 FKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPSDHFRRDSGGSCT-GGV 195
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK 241
V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TL+DA +V+ +L LERR FGK
Sbjct: 196 VHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALKVESQLKMLERRRFGK 255
Query: 242 DSL-IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
+S I+VA+VG GYSGVELAAT+SERL+ KGIVQAINV+TTICP+ PGNR+AALKVL +
Sbjct: 256 NSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPSAPPGNRDAALKVLES 315
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQ 358
R +QL LGYFV CIR + +S ++ A + N D K +LELQPA +G++SQ
Sbjct: 316 RNIQLFLGYFVNCIR------EASASEDSSSMVTDAKEVNGDHKKLLLELQPAQRGIQSQ 369
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
+ EAD+VLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+A
Sbjct: 370 VLEADMVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAA 428
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
LRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGR+DAA++ S
Sbjct: 429 LRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRSDAAITAS 488
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 537
F+EG+TL+GP+GH+ARK+ Y +R+PTDEHR+KVG+SW TK+A+DS+A LQ+ ++ +L+S
Sbjct: 489 FIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNAVSSMLTS 547
>gi|242095110|ref|XP_002438045.1| hypothetical protein SORBIDRAFT_10g007230 [Sorghum bicolor]
gi|241916268|gb|EER89412.1| hypothetical protein SORBIDRAFT_10g007230 [Sorghum bicolor]
Length = 545
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/500 (64%), Positives = 391/500 (78%), Gaps = 10/500 (2%)
Query: 42 NRFISFAASNSSGRNGDLVVTSEDESASQT--YTWPDKKKPRICILGGGFGGLYTALRLE 99
+R AS+ SG G TS DE+ + Y+WPDK++PR+CILGGGFGGLYTALRL+
Sbjct: 53 SRLFRCMASSGSGDGGFAQSTSTDEAVTPLPLYSWPDKQRPRVCILGGGFGGLYTALRLD 112
Query: 100 SLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRV 159
SLVW +DK+PQVLLVDQS++FVFKPMLYELLSGEVD WEIAP F +LL NT VQF +D V
Sbjct: 113 SLVWPNDKRPQVLLVDQSDKFVFKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVRDSV 172
Query: 160 KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFS 219
KLL PSDH GP GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+
Sbjct: 173 KLLRPSDHF-RRGPGEPCTGGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYALPFT 231
Query: 220 TLEDACRVDRKLSELERRNFGKDS-LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278
TLEDA RV+ KL LER+ FGK S I VA+VG GYSGVELAAT+SERL++ G V+AINV
Sbjct: 232 TLEDALRVESKLKMLERKRFGKSSPTIEVAIVGLGYSGVELAATISERLKDTGTVKAINV 291
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
+TTICPT GNR+AALKVL +R +QL LGYFV CI+ EAS S + D
Sbjct: 292 QTTICPTAPQGNRDAALKVLESRNIQLFLGYFVTCIK-----EASTSDDSSSTVTYAEVD 346
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 398
+ K IL+LQPA +GL+ Q EADLVLWTVGS +P ++PP+ + +PLN RGQ ET
Sbjct: 347 GDYRKLILDLQPAERGLKGQTLEADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVET 405
Query: 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
DETL VKGHPR FA+GDS+ALRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFR
Sbjct: 406 DETLQVKGHPRTFAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 465
Query: 459 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
FQNLGEMM LGRNDAAV+ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK
Sbjct: 466 FQNLGEMMTLGRNDAAVTASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGISWFTK 525
Query: 519 SAIDSVALLQSTLTKVLSSS 538
+A+D++A +Q+ ++ L+ S
Sbjct: 526 TAVDTLASVQNAVSNTLTGS 545
>gi|218197796|gb|EEC80223.1| hypothetical protein OsI_22150 [Oryza sativa Indica Group]
Length = 548
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/479 (66%), Positives = 390/479 (81%), Gaps = 11/479 (2%)
Query: 62 TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
+S DE Y+WPDK++PR+CILGGGFGGLYTAL LESLVW +DKKPQV+LVDQS+RFV
Sbjct: 77 SSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALSLESLVWPNDKKPQVMLVDQSDRFV 136
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
FKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDH + +CT GG
Sbjct: 137 FKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPSDHFRRDSGGSCT-GGV 195
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK 241
V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TL+DA +V+ +L LERR FGK
Sbjct: 196 VHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALKVESQLKMLERRRFGK 255
Query: 242 DSL-IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
+S I+VA+VG GYSGVELAAT+SERL+ KGIVQAINV+TTICP+ PGNR+AALKVL +
Sbjct: 256 NSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPSAPPGNRDAALKVLES 315
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQ 358
R +QL LGYFV CIR E S ++ A + N D K +LELQPA +G++SQ
Sbjct: 316 RNIQLFLGYFVNCIREASASEDSS------SMVTDAKEVNGDHKKLLLELQPAQRGIQSQ 369
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
+ EAD+VLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+A
Sbjct: 370 VLEADMVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAA 428
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
LRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGR+DAA++ S
Sbjct: 429 LRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRSDAAITAS 488
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 537
F+EG+TL+GP+GH+ARK+ Y +R+PTDEHR+KVG+SW TK+A+DS+A LQ+ ++ +L+S
Sbjct: 489 FIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNAVSSMLTS 547
>gi|226510558|ref|NP_001148870.1| LOC100282489 [Zea mays]
gi|195622788|gb|ACG33224.1| NADH dehydrogenase [Zea mays]
Length = 546
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/494 (65%), Positives = 392/494 (79%), Gaps = 12/494 (2%)
Query: 49 ASNSSGRNGDLVVTS-EDESASQ--TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQD 105
AS+ SG +GD ++ DE+A+ Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +
Sbjct: 60 ASSGSG-DGDFAQSTLTDEAAAPFPLYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPN 118
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
DK+PQVLLVDQS++FVFKPMLYELLSGEVD WEIAP F +LL NT VQF +D VKLL PS
Sbjct: 119 DKRPQVLLVDQSDKFVFKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVRDSVKLLRPS 178
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
DHL CT GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TLEDA
Sbjct: 179 DHLRRKPGEPCT-GGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYALPFTTLEDAL 237
Query: 226 RVDRKLSELERRNFGKDS-LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
RV+ KL LER+ FGK S I VA+VG GYSGVELAAT+SERL+ G V+AINV+TT+CP
Sbjct: 238 RVESKLKMLERKRFGKSSPTIEVAIVGLGYSGVELAATISERLKNTGTVKAINVQTTVCP 297
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
T GNR+AALKVL +R +QL+LGYFV CI+ EA S + D + K
Sbjct: 298 TAPQGNRDAALKVLESRNIQLLLGYFVSCIK-----EAPTSDDSSSTVTYSEVDGDHRKL 352
Query: 345 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV 404
IL+LQPA +GL+ Q +ADLVLWTVGS +P ++PP+ + +PLN RGQ ET+ETL V
Sbjct: 353 ILDLQPAERGLKGQTLDADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQV 411
Query: 405 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 464
KGHPR FA+GDS+ALRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE
Sbjct: 412 KGHPRTFAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 471
Query: 465 MMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSV 524
MM LGRNDAAV+ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK+AIDS+
Sbjct: 472 MMTLGRNDAAVTASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGISWFTKAAIDSL 531
Query: 525 ALLQSTLTKVLSSS 538
A +Q+ ++ L+ S
Sbjct: 532 ASVQNAVSNTLTGS 545
>gi|413952684|gb|AFW85333.1| NADH dehydrogenase [Zea mays]
Length = 545
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/493 (65%), Positives = 389/493 (78%), Gaps = 11/493 (2%)
Query: 49 ASNSSGRNGDLV-VTSEDESAS-QTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDD 106
AS+ SG +GD T DE+A Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +D
Sbjct: 60 ASSGSG-DGDFARSTLTDEAAPFPLYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPND 118
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+PQVLLVDQS++FVFKPMLYELLSGEVD WEIAP F +LL NT VQF +D VKLL PSD
Sbjct: 119 KRPQVLLVDQSDKFVFKPMLYELLSGEVDIWEIAPSFTELLKNTSVQFVRDSVKLLRPSD 178
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
HL CT GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TLEDA R
Sbjct: 179 HLRRKPGEPCT-GGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYALPFTTLEDALR 237
Query: 227 VDRKLSELERRNFGKDS-LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT 285
V+ KL LER+ FGK S I VA+VG GYSGVELAAT+SERL+ G V+AINV+TT+CPT
Sbjct: 238 VESKLKMLERKRFGKSSPTIEVAIVGLGYSGVELAATISERLKNTGTVKAINVQTTVCPT 297
Query: 286 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI 345
GNR+AALKVL +R +QL LGYFV CI+ EA S + D + K I
Sbjct: 298 APQGNRDAALKVLESRNIQLFLGYFVSCIK-----EAPTSDESSSTVTYSEVDGDHRKLI 352
Query: 346 LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 405
L+LQPA +GL+ Q +ADLVLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VK
Sbjct: 353 LDLQPAERGLKGQTLDADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVK 411
Query: 406 GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 465
GHPR FA+GDS+ALRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM
Sbjct: 412 GHPRTFAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 471
Query: 466 MILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
M LGRNDAAV+ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK+AIDS+A
Sbjct: 472 MTLGRNDAAVTASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGISWFTKAAIDSLA 531
Query: 526 LLQSTLTKVLSSS 538
+Q+ ++ L+ S
Sbjct: 532 SVQNAVSNTLTGS 544
>gi|357124831|ref|XP_003564100.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 548
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/491 (65%), Positives = 389/491 (79%), Gaps = 7/491 (1%)
Query: 49 ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKK 108
AS+S+G G +S DE+ Y+WPDK++PR+CILGGGFGGLYTALRLESLVW + K
Sbjct: 64 ASSSTGNGGFSRPSSTDETPVPVYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPGNNK 123
Query: 109 PQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL 168
PQVLLVDQS+RFVFKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDHL
Sbjct: 124 PQVLLVDQSDRFVFKPMLYELLSGEVDVWEIAPYFTELLKNTSVQFVKDSVKLLRPSDHL 183
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
+CT GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE A PF+TLE A +V+
Sbjct: 184 RREPGGSCT-GGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEHAIPFTTLEHALKVE 242
Query: 229 RKLSELERRNFGKDSL-IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT 287
+L LERR FGK S I VA+VG GYSGVELAAT+SERL+ G V+AINV+TTICP+
Sbjct: 243 SELKMLERRRFGKSSPPIEVAIVGLGYSGVELAATISERLKNTGTVKAINVQTTICPSAP 302
Query: 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347
PGNR+AALKVL ++ +QL LGY V C+R EF AS S A A + K ++E
Sbjct: 303 PGNRDAALKVLESQNIQLFLGYSVSCVR---EFYAS-DDSSSMATDEKEAGGDHKKLLVE 358
Query: 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 407
LQPA +GL+SQ+ EADLVLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGH
Sbjct: 359 LQPAQRGLQSQVLEADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGH 417
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
PR FA+GDS+ALRD SG+ LPA AQVAFQQADFAGWN+WAAINDRPLLPFRFQNLGEMM
Sbjct: 418 PRTFAIGDSAALRDPSGKFLPANAQVAFQQADFAGWNIWAAINDRPLLPFRFQNLGEMMT 477
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALL 527
LGRNDAA++ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK A+DS+A L
Sbjct: 478 LGRNDAAITASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGLSWFTKGAVDSLASL 537
Query: 528 QSTLTKVLSSS 538
Q+ ++ +++SS
Sbjct: 538 QNAVSNMIASS 548
>gi|222635195|gb|EEE65327.1| hypothetical protein OsJ_20585 [Oryza sativa Japonica Group]
Length = 877
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/479 (66%), Positives = 388/479 (81%), Gaps = 11/479 (2%)
Query: 62 TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
+S DE Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +DKKPQV+LVDQS+RFV
Sbjct: 77 SSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPNDKKPQVMLVDQSDRFV 136
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
FKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDH + +CT GG
Sbjct: 137 FKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPSDHFRRDSGGSCT-GGV 195
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK 241
V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TL+DA +V+ +L LERR FGK
Sbjct: 196 VHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALKVESQLKMLERRRFGK 255
Query: 242 DSL-IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
+S I+VA+VG GYSGVELAAT+SERL+ KGIVQAINV+TTICP+ PGNR+AALKVL +
Sbjct: 256 NSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPSAPPGNRDAALKVLES 315
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQ 358
R +QL LGYFV CIR + +S ++ A + N D K +LELQPA +G++SQ
Sbjct: 316 RNIQLFLGYFVNCIR------EASASEDSSSMVTDAKEVNGDHKKLLLELQPAQRGIQSQ 369
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
+ EAD+VLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+A
Sbjct: 370 VLEADMVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAA 428
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
LRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGR+DAA++ S
Sbjct: 429 LRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRSDAAITAS 488
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 537
F+EG+TL+GP+GH+ARK+ Y +R+PTDEHR+KVG+SW TK+A+DS+A LQ+ + S
Sbjct: 489 FIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNAVANSFPS 547
>gi|302790079|ref|XP_002976807.1| hypothetical protein SELMODRAFT_268023 [Selaginella moellendorffii]
gi|300155285|gb|EFJ21917.1| hypothetical protein SELMODRAFT_268023 [Selaginella moellendorffii]
Length = 536
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/497 (58%), Positives = 353/497 (71%), Gaps = 33/497 (6%)
Query: 49 ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKK 108
+S S+G + D TSE + Y W D+K PRICILGGGFGGLYTALRL+SLVW +K+
Sbjct: 66 SSKSAGGSDDRSTTSE--KSLNPYVWSDRKSPRICILGGGFGGLYTALRLDSLVWTPEKR 123
Query: 109 PQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL 168
PQ+LLVDQSERFVFKPMLYELLS EVD WE+AP FADLLA+T ++F KD VK + P D +
Sbjct: 124 PQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKDNVKSVSPFDAV 183
Query: 169 G-VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
N + GG V LESG+ VEYDWLVL+LGAE K+D+VPGA E A PFSTLEDA R+
Sbjct: 184 ADDNKSSPSSIGGKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRL 243
Query: 228 DRKLSELERRNFGKDSL-IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG 286
+++L ELER FG L I VAVVG GY G+EL+ATV+ERL E+G VQ I+V + ICP+
Sbjct: 244 EKRLEELERERFGPKQLPIDVAVVGSGYCGIELSATVAERLGERGRVQVIDVNSEICPSA 303
Query: 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 346
GNRE A KVLS+R V+L LGYFV I +PE K + + +L
Sbjct: 304 PTGNREKASKVLSSRNVKLELGYFVTNIAL-----KDSNEPE----------KKNKRVVL 348
Query: 347 ELQPA-----IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 401
EL+PA K S EADLVLWTVG + L+P P N RGQ +TDET
Sbjct: 349 ELKPANSRNTRKAPPSTFLEADLVLWTVGGRALVPKA---------FPTNGRGQTDTDET 399
Query: 402 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 461
L VKGHPRIFA+GDS+ +DSSGR L TAQVA QQAD+AGWNLWAAIN+RPLLPFR+Q+
Sbjct: 400 LRVKGHPRIFAIGDSAGNKDSSGRLLQTTAQVALQQADYAGWNLWAAINNRPLLPFRYQH 459
Query: 462 LGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
LGEMM LGR + AV+PSF E +TLDG +GH+ARKLAYL RLPT+EHR+KVGVSWL KSA+
Sbjct: 460 LGEMMTLGRYNGAVTPSFFEDITLDGVLGHTARKLAYLYRLPTNEHRVKVGVSWLAKSAV 519
Query: 522 DSVALLQSTLTKVLSSS 538
D+ + +Q T+ + S
Sbjct: 520 DAFSYVQGTVLSLAQKS 536
>gi|302797549|ref|XP_002980535.1| hypothetical protein SELMODRAFT_178273 [Selaginella moellendorffii]
gi|300151541|gb|EFJ18186.1| hypothetical protein SELMODRAFT_178273 [Selaginella moellendorffii]
Length = 541
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 293/506 (57%), Positives = 353/506 (69%), Gaps = 42/506 (8%)
Query: 49 ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKK 108
+S S+G + D TSE Y W D+K PRICILGGGFGGLYTALRL+SLVW +K+
Sbjct: 62 SSQSAGGSDDRSTTSE--KFLNPYVWSDRKSPRICILGGGFGGLYTALRLDSLVWTPEKR 119
Query: 109 PQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL 168
PQ+LLVDQSERFVFKPMLYELLS EVD WE+AP FADLLA+T ++F KD VK + P D +
Sbjct: 120 PQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKDNVKSVSPFDAV 179
Query: 169 G-VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
N A + GG V LESG+ VEYDWLVL+LGAE K+D+VPGA E A PFSTLEDA R+
Sbjct: 180 ADDNKSSASSIGGKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRL 239
Query: 228 DRKLSELERRNFGKDSL-IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG 286
+++L ELER FG L I VAVVG GY G+EL+ATV+ERL E+G VQ I+V + ICP+
Sbjct: 240 EKRLEELERERFGPKQLPIDVAVVGSGYCGIELSATVAERLGERGRVQVIDVNSEICPSA 299
Query: 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 346
GNRE A +VLS+R V+L LGYFV I +PE K + + +L
Sbjct: 300 PTGNREKASEVLSSRNVKLELGYFVTNIAL-----KDSNEPE----------KKNKRVVL 344
Query: 347 ELQPA-----IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 401
EL+PA K S EADLVLWTVG + L+P P N RGQ +TDET
Sbjct: 345 ELKPANSRNTRKAPPSTFLEADLVLWTVGGRALVPKA---------FPTNGRGQTDTDET 395
Query: 402 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR--- 458
L VKGHPRIFA+GDS+ +DSSGR L TAQVA QQAD+AGWNLWAAIN+RPLLPFR
Sbjct: 396 LRVKGHPRIFAIGDSAGNKDSSGRLLQTTAQVALQQADYAGWNLWAAINNRPLLPFRLES 455
Query: 459 ------FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 512
+Q+LGEMM LGR + AV+PSF E +TLDG +GH+ARKLAYL RLPT+EHRLKVG
Sbjct: 456 YCPTLLYQHLGEMMTLGRYNGAVTPSFFEDITLDGVLGHTARKLAYLYRLPTNEHRLKVG 515
Query: 513 VSWLTKSAIDSVALLQSTLTKVLSSS 538
VSWL KSA+D+ + +Q T+ + S
Sbjct: 516 VSWLAKSAVDAFSYVQGTVLSLAQKS 541
>gi|357520141|ref|XP_003630359.1| hypothetical protein MTR_8g094730 [Medicago truncatula]
gi|355524381|gb|AET04835.1| hypothetical protein MTR_8g094730 [Medicago truncatula]
Length = 346
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/347 (73%), Positives = 295/347 (85%), Gaps = 11/347 (3%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
+ WLVL+LGAE KLDVVPGA EFA PFSTLEDA +V+ +L+ LER+ FGKD I VA+VG
Sbjct: 6 FYWLVLALGAEAKLDVVPGATEFAIPFSTLEDARKVNNRLTILERKTFGKDYQISVAIVG 65
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
CGYSGVELAATV+ERL+ +GIV+AINV+T ICPT PGNREAALKVLS+RKV+L+LGYFV
Sbjct: 66 CGYSGVELAATVAERLQNRGIVRAINVDTMICPTAPPGNREAALKVLSSRKVELLLGYFV 125
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
CIR+ E E+S N + +KYILELQPA +G++S+I EADLVLWTVGS
Sbjct: 126 NCIRKASESESS----------NTPKGLDFEKYILELQPAERGMQSKIIEADLVLWTVGS 175
Query: 372 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431
KP LPH+E + +PLNARGQAETDETL VKGHPRIF+LGDSSALRDS+GR LPATA
Sbjct: 176 KPPLPHLEYSDVPFV-IPLNARGQAETDETLRVKGHPRIFSLGDSSALRDSNGRILPATA 234
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
QVAFQQADF GWNLWAAIN RPLLPFRFQNLGEMM LGRNDAA+SPSFV+G+TL+GP+GH
Sbjct: 235 QVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAISPSFVDGLTLEGPVGH 294
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
+ARK+AYL+RLPTDEHRLKVG+SW TKSAIDSV+LLQSTL+KVLS S
Sbjct: 295 AARKIAYLMRLPTDEHRLKVGISWFTKSAIDSVSLLQSTLSKVLSGS 341
>gi|168031551|ref|XP_001768284.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680462|gb|EDQ66898.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/470 (56%), Positives = 337/470 (71%), Gaps = 36/470 (7%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PRICILGGGFGGLYTALRLESL+W DKKPQ++LVDQS+RFVFKP+LYEL+S E D W
Sbjct: 1 QRPRICILGGGFGGLYTALRLESLIWPPDKKPQIVLVDQSDRFVFKPLLYELVSKEADEW 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTH-----GGTVLLESGLIVEY 192
E+AP F +LLANT ++F +D V+ + PSD VNG A GG+V L SG+ V+Y
Sbjct: 61 EVAPSFKELLANTNIRFCQDTVRSIQPSD--AVNGTPALATASRDVGGSVYLSSGMQVDY 118
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGC 252
DWLVLSLG+EP+++VVPGA+E A PFSTLEDA VDR+L+ LE + I V VVG
Sbjct: 119 DWLVLSLGSEPRMNVVPGASELALPFSTLEDALEVDRRLTTLENEA-SVYAPIEVVVVGS 177
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
GYSGVEL+AT++ERL +KG V+ I++ + I + G REAA +VLS+R V+L+LGYFV
Sbjct: 178 GYSGVELSATLAERLGQKGTVKVIDMASDIVASAPAGTREAASRVLSSRNVELMLGYFVA 237
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-----QPAIKGLESQIFEADLVLW 367
+RR AD++S++ LEL +P+ + Q EADLVLW
Sbjct: 238 NMRR--------------------ADESSNRIRLELGQPSQRPSRRAPPGQTIEADLVLW 277
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
T G+K +P E P+N RGQA+TDE L V+G+PRIFALGDS+ D +G+ L
Sbjct: 278 TAGTKVSIPPSETQAG-YQSFPINGRGQADTDEMLRVRGYPRIFALGDSAGATDGNGKQL 336
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRF--QNLGEMMILGRNDAAVSPSFVEGVTL 485
P+TAQVAFQQAD+ GWNLWAAIN+RPLLPFRF Q+LGEMM LG ND +VS SF+EGVTL
Sbjct: 337 PSTAQVAFQQADYVGWNLWAAINNRPLLPFRFVYQHLGEMMTLGTNDGSVSLSFIEGVTL 396
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVL 535
DG +GH ARKLAYL RLPT+EHR +VG+SWL K+ + +V+ LQ T++ L
Sbjct: 397 DGFLGHQARKLAYLYRLPTNEHRARVGLSWLAKTTVSTVSYLQETISNSL 446
>gi|326508716|dbj|BAJ95880.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 362
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/340 (64%), Positives = 268/340 (78%), Gaps = 10/340 (2%)
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDS-LIRVAVVGCG 253
LVL+LGAE K+DVVPG+AE+A PF+TLE A +V+ +L LERR FGK+S I+VAVVG G
Sbjct: 27 LVLALGAEAKIDVVPGSAEYALPFTTLEHALKVESELKMLERRRFGKNSPSIQVAVVGMG 86
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
YSGVELAAT+SERL+ G V+AIN +TTICP PGNREAALKVL ++ +QL LGY V C
Sbjct: 87 YSGVELAATISERLKSTGTVKAINFQTTICPNAPPGNREAALKVLESQNIQLFLGYSVNC 146
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQIFEADLVLWTVGS 371
IR V E +SG + A + D K +LELQ A +GL+SQ+ EADLVLWTVGS
Sbjct: 147 IREVYASE------DSGGMVADAKEAGGDDKKLVLELQAAQRGLQSQVLEADLVLWTVGS 200
Query: 372 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431
+ + ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+ALRD SG+ LPA A
Sbjct: 201 QSQILRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAALRDPSGKFLPANA 259
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA++ +F+EG+TL+GPIGH
Sbjct: 260 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAITANFIEGLTLEGPIGH 319
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 531
+ARKL Y +R+PTDEHR+KVG+SW K A+DS+A LQ +
Sbjct: 320 AARKLVYCLRMPTDEHRVKVGISWFAKGAVDSLASLQDAV 359
>gi|223944659|gb|ACN26413.1| unknown [Zea mays]
Length = 302
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/306 (64%), Positives = 240/306 (78%), Gaps = 7/306 (2%)
Query: 234 LERRNFGKDS-LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE 292
LER+ FGK S I VA+VG GYSGVELAAT+SERL+ G V+AINV+TT+CPT GNR+
Sbjct: 2 LERKRFGKSSPTIEVAIVGLGYSGVELAATISERLKNTGTVKAINVQTTVCPTAPQGNRD 61
Query: 293 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 352
AALKVL +R +QL LGYFV CI+ EA S + D + K IL+LQPA
Sbjct: 62 AALKVLESRNIQLFLGYFVSCIK-----EAPTSDESSSTVTYSEVDGDHRKLILDLQPAE 116
Query: 353 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 412
+GL+ Q +ADLVLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGHPR FA
Sbjct: 117 RGLKGQTLDADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFA 175
Query: 413 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
+GDS+ALRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRND
Sbjct: 176 IGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRND 235
Query: 473 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLT 532
AAV+ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK+AIDS+A +Q+ ++
Sbjct: 236 AAVTASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGISWFTKAAIDSLASVQNAVS 295
Query: 533 KVLSSS 538
L+ S
Sbjct: 296 NTLTGS 301
>gi|332707212|ref|ZP_08427265.1| NADH dehydrogenase, FAD-containing subunit [Moorea producens 3L]
gi|332353946|gb|EGJ33433.1| NADH dehydrogenase, FAD-containing subunit [Moorea producens 3L]
Length = 398
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 202/448 (45%), Positives = 273/448 (60%), Gaps = 59/448 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K+ RICILGGGFGGLYTALRL L W+ ++P+++LVDQ++RF+F P+LYEL++ E+
Sbjct: 3 KQPARICILGGGFGGLYTALRLSQLPWEKPQQPEIVLVDQNDRFLFSPLLYELITSELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + +LLANTGV+F + V G++ V LE+G +YD LV
Sbjct: 63 WEIAPPYEELLANTGVRFTQAAVA--------GID-----VEQQQVQLETGSEFQYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E L+ +PG AE+A PF T+ DA ++ +L LE + K IR+A+VG GYSG
Sbjct: 110 LALGGETPLEQLPGVAEYAIPFRTITDAYHLEERLRILEESDTDK---IRIAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA ++ERL E+G ++ I + I T T NREAA K L+ +KV +
Sbjct: 167 VELACHLAERLGERGRLRLIELGDVILRTSTDFNREAARKALNEQKVWI----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E SV+ +I D S Y KG + DLVLWTVG++
Sbjct: 216 --DLETSVE--------SIGPDTISLLY--------KG-QVDTIPVDLVLWTVGTR---- 252
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
V P + LPL N RGQ T L HP IFALGD + RD+ +P+P TAQ A
Sbjct: 253 -VTPV---VRSLPLKQNHRGQLTTTHRLQAVDHPEIFALGDLADCRDADNQPVPNTAQSA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ GWN+WA++ RPLLPFR+Q LGEMM LG+++A +S G+ LDGP+ H R
Sbjct: 309 FQQADYVGWNVWASLTGRPLLPFRYQQLGEMMTLGKDNATLSGL---GLKLDGPLAHIVR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAID 522
+LAYL R+PT EH+LKVG++W+T+ D
Sbjct: 366 RLAYLYRMPTIEHQLKVGMNWITRPLTD 393
>gi|434407882|ref|YP_007150767.1| NADH dehydrogenase, FAD-containing subunit [Cylindrospermum
stagnale PCC 7417]
gi|428262137|gb|AFZ28087.1| NADH dehydrogenase, FAD-containing subunit [Cylindrospermum
stagnale PCC 7417]
Length = 397
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 205/453 (45%), Positives = 275/453 (60%), Gaps = 63/453 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQPARICILGGGFGGLYTALRLSQLPWEATPKPEIILVDQSDRFLFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TGV+F H G+ + V L+ G + D LV
Sbjct: 63 WEIAPPFEELLEGTGVRF------------HQGIVSEIDIDQR-RVQLQDGTKIICDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGAA++A+ F T+ DA R++ +L LE K IRVA+VG GYSG
Sbjct: 110 LTLGGETPLDLVPGAADYAYSFRTITDAYRLEERLRVLEESAPEK---IRVAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++R+ EKG + I + I T NREAA K L A+ G F+
Sbjct: 167 VELACKLADRIGEKGRFRLIEIGDQILRTSPEFNREAAKKALDAK------GVFI----- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPL 374
+ E V +IA D S Y ++Q+ DLV+WTVG++
Sbjct: 216 --DLETKVL--------SIAQDTISLDY-----------KNQVDTIPVDLVIWTVGTR-- 252
Query: 375 LPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
V P + LPL N RGQ T TL V HP IFALGD + RD+ G+ +PATAQ
Sbjct: 253 ---VAPV---IKTLPLKQNQRGQISTTPTLQVLDHPDIFALGDLADSRDAEGQQVPATAQ 306
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 492
VAFQQAD+A WN+WA++ +RPLLPFR+Q LGEMM LG ++A ++ G+ LDGP+ +
Sbjct: 307 VAFQQADYAAWNIWASLTNRPLLPFRYQQLGEMMTLGTDNATLTSL---GIKLDGPLAYV 363
Query: 493 ARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
AR+LAYL RLPT +H+LKVG +WL + I++++
Sbjct: 364 ARRLAYLYRLPTLDHKLKVGFNWLVRPIIETLS 396
>gi|443312966|ref|ZP_21042580.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
gi|442777116|gb|ELR87395.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
Length = 397
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 197/451 (43%), Positives = 267/451 (59%), Gaps = 60/451 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ +KP+++LVD+S+RF+F P LYELL+GE+
Sbjct: 4 QQPDRICILGGGFGGLYTALRLSQLPWEA-QKPEIVLVDKSDRFLFSPFLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F ++LANTGV+ + V + + + V L G + YD LV
Sbjct: 63 WEIAPPFVEILANTGVRCLQGEVADINTDEQI-------------VYLLDGSEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGA+ +AFPF T+ DA ++++L LE K IRVA+VG GYSG
Sbjct: 110 LALGGETPLDMVPGASSYAFPFRTVSDAYSLEQRLRMLEETQTDK---IRVAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +SERL+E+G ++ I + I T NR A K L AR V + L + I
Sbjct: 167 VELACKLSERLKERGRLRLIELSDQILRTSPEFNRTTATKALEARGVWVDLETKIESI-- 224
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
SD LE + + + DLV+WTVG++
Sbjct: 225 -----------------------TSDAIALEYKNQVDTI-----PVDLVIWTVGTR---- 252
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
N + LPL N RGQ T TL V HP IFALGD + D+ G+ +P TAQ A
Sbjct: 253 ----VNPVVQSLPLKHNGRGQITTTTTLQVVDHPEIFALGDLADCIDADGKQVPTTAQSA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ GWN+WA++ +RPLLPFR+Q+LGEMM LG N A + G+ LDG + + AR
Sbjct: 309 FQQADYTGWNIWASLTNRPLLPFRYQHLGEMMTLGTNSATFAGL---GIKLDGSLAYVAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+LAYL R+PT H+LKVG++W+T+ +D++
Sbjct: 366 RLAYLYRMPTLGHQLKVGLNWITQPIVDNLT 396
>gi|440681608|ref|YP_007156403.1| NADH dehydrogenase [Anabaena cylindrica PCC 7122]
gi|428678727|gb|AFZ57493.1| NADH dehydrogenase [Anabaena cylindrica PCC 7122]
Length = 397
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 201/445 (45%), Positives = 264/445 (59%), Gaps = 55/445 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RF+F P LYELL+GE+ WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQLPWESTPKPEIILVDQSDRFLFSPFLYELLTGELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LL NTGV+F + V + + L+ + YD LVL+LG
Sbjct: 67 PPYQELLQNTGVRFHQATVSEIDIDKQ-------------RIQLQDSPGISYDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD+VPGAA A+PF T+ DA R++ L L+ + K IRVA+VG GYSGVELA
Sbjct: 114 GETPLDLVPGAATHAYPFRTITDAYRLEEHLRVLKELDTDK---IRVAIVGAGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++R+ EKG + I + I T NREAA K L AR V + L V I GE
Sbjct: 171 CKLADRIGEKGRFRLIEISDQILRTSPEFNREAAKKALDARSVFIDLETKVVSI---GEK 227
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
S++ KN I DLV+WTVG++ V P
Sbjct: 228 TISLEY------------KNQVDEI---------------PVDLVIWTVGTR-----VAP 255
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
LH L N RGQ T TL V HP IFALGD + D+ G+ +PATAQVAFQQAD+
Sbjct: 256 VVKTLH-LKQNQRGQITTTPTLQVLEHPEIFALGDLADCIDAEGKQVPATAQVAFQQADY 314
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
WN+WA++ +RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + + AR+LAYL
Sbjct: 315 TAWNIWASLTNRPLLPFRYQQLGEMMALGIDNATLTGL---GIKLDGSLAYVARRLAYLY 371
Query: 501 RLPTDEHRLKVGVSWLTKSAIDSVA 525
RLPT +H+LKVG +WL + I++++
Sbjct: 372 RLPTLDHQLKVGFNWLVRPIIETLS 396
>gi|119511098|ref|ZP_01630217.1| NADH dehydrogenase [Nodularia spumigena CCY9414]
gi|119464269|gb|EAW45187.1| NADH dehydrogenase [Nodularia spumigena CCY9414]
Length = 396
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 203/451 (45%), Positives = 275/451 (60%), Gaps = 59/451 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ PRICILGGGFGGLYTALRL L W++ +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 EQTPRICILGGGFGGLYTALRLSQLPWENGEKPEIVLVDQSDRFIFAPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL NTGV+F C + G++ H L+ G + YD LV
Sbjct: 63 WEIAPPFEELLQNTGVRF--------CQAIVSGIDTEQKRVH-----LQEGTEIAYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGA A+PF + DA R++ +L LE K IRVA+VG GYSG
Sbjct: 110 LALGGETPLDMVPGAISHAYPFRNITDAYRLEERLRVLEE---SKAEKIRVAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL E+G + I + I T NREAA K L A+KV L
Sbjct: 167 VELACKLADRLGERGRFRLIQIGDQILRTSPDFNREAAKKALDAKKVFL----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPL 374
+ E V+ ++ D S +Y ++Q+ DLV+WTVG++
Sbjct: 216 --DLETKVE--------SVGQDTISLEY-----------KNQVDTIPVDLVIWTVGTR-- 252
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
V P L L N RGQ T TL V HP IFALGD + D+ G+ +PATAQVA
Sbjct: 253 ---VAPVVKTLA-LKQNQRGQITTTPTLQVLEHPEIFALGDLADCCDAEGQKVPATAQVA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ WN+WA+++DRPLLPFR+Q LGEMM LG+++A ++ G+ LDG + AR
Sbjct: 309 FQQADYTAWNIWASLSDRPLLPFRYQQLGEMMALGKDNATLTGL---GIKLDGSFAYLAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+LAYL R+PT +H+LKVG +WL + ID+++
Sbjct: 366 RLAYLYRMPTLDHQLKVGFNWLVRPIIDTLS 396
>gi|427740170|ref|YP_007059714.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
gi|427375211|gb|AFY59167.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
Length = 396
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 197/451 (43%), Positives = 279/451 (61%), Gaps = 59/451 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++K RICILGGGFGGLYTALRL L W++ +KP+++LVDQ++RF+F P+LYELL+GE+ +
Sbjct: 3 EQKSRICILGGGFGGLYTALRLVKLNWEESQKPEIVLVDQNDRFLFSPLLYELLTGEMQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + +LL NTG++F++ V G++ T V L +G + YD LV
Sbjct: 63 WEIAPTYQELLQNTGIRFYQATVS--------GID-----TEEKRVELLNGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G E LD+VPGA +A F +L+DA ++ +L LE + K IR+A+VG GYSG
Sbjct: 110 LAMGGETPLDMVPGATSYAHAFRSLDDAYALEEQLRILEESDKDK---IRIAIVGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +S+RL E+G + + + I NREAA K L R V +
Sbjct: 167 VELACKLSDRLGERGRFRLVEMADGILRNSPEFNREAAKKALDERGVWV----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E V+ +IAAD S +Y KG+ I DLV+WTVG++ + P
Sbjct: 216 --DLETKVE--------SIAADSISLEY--------KGVVDTI-PVDLVIWTVGTR-VTP 255
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
VE LP+ N +GQ T TL V +P IFALGD + D+ G+ +P TAQ A
Sbjct: 256 LVE-------QLPIKHNKQGQVTTTSTLQVVDNPDIFALGDLAESFDAEGKQIPTTAQAA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ GWN+WA++ +RPLLPFR+Q+LGE M LG ++A ++ G+ ++G G AR
Sbjct: 309 FQQADYVGWNIWASLTNRPLLPFRYQHLGEFMSLGVDNATLTGL---GLKMEGTFGFVAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+LAYL RLPT EH+LKVG +WLT+ I++++
Sbjct: 366 RLAYLYRLPTLEHKLKVGFNWLTRPIIEALS 396
>gi|434387958|ref|YP_007098569.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428018948|gb|AFY95042.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 395
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 192/438 (43%), Positives = 260/438 (59%), Gaps = 55/438 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALR L W+ +KP++ L+D+ FVF P+LYEL++GE+ WEIA
Sbjct: 6 RICILGGGFGGLYTALRANQLAWEPGQKPEITLIDRHPNFVFTPLLYELITGEMQGWEIA 65
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P FA+LL T ++F + VK + TV LE + YD LVLSLG
Sbjct: 66 PPFAELLKGTDIRFVQGSVKQIDSEQK-------------TVRLEDDTEIAYDRLVLSLG 112
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+E D VPG AE A F +LEDA ++D KL LE N + IRVA+VG GY+GVE+A
Sbjct: 113 SETPADSVPGVAEHAIAFRSLEDAYKLDTKLRLLEASNAER---IRVAIVGAGYTGVEIA 169
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL+E+G ++ I TI P NR AALK L R + + +
Sbjct: 170 CKLADRLKERGRIRLIQSRDTILPNALEFNRNAALKALERRGIWV-------------DL 216
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E +V + I AD Y KG+ I ++V+WTVG++ V P
Sbjct: 217 ETNVSE--------ITADTIGLIY--------KGVTDTI-PVEIVMWTVGNQ-----VSP 254
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
+R LP NA G+ ETL V +P IFALGD++A+ G +P AQVAFQQ+DF
Sbjct: 255 AIDRF-GLPANAEGKLTVTETLQVTENPDIFALGDAAAILAPHGVAIPTNAQVAFQQSDF 313
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
WN+W+++ +RPLLPF + NLGEM+ LG ++AA+S G+ LDGP+ + AR+L YL
Sbjct: 314 VAWNVWSSLTNRPLLPFHYTNLGEMLTLGDDNAALSSM---GIQLDGPLAYLARRLVYLY 370
Query: 501 RLPTDEHRLKVGVSWLTK 518
RLPT EH+LKVG++WLT+
Sbjct: 371 RLPTIEHQLKVGLNWLTQ 388
>gi|428306388|ref|YP_007143213.1| NADH dehydrogenase [Crinalium epipsammum PCC 9333]
gi|428247923|gb|AFZ13703.1| NADH dehydrogenase [Crinalium epipsammum PCC 9333]
Length = 397
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/438 (44%), Positives = 265/438 (60%), Gaps = 55/438 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W+ +KP+++LVD S+RF+F P LYELL+GE+ WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQLPWEKSQKPEIILVDHSDRFLFTPFLYELLTGELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F+++LANTG++F C G++ V LE G + YD +VL+LG
Sbjct: 67 PPFSEILANTGIRF--------CQGVVAGID-----VEAKQVYLEDGNQLAYDRIVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ L++V GA+E+A PF + DA R++ +L LE K IR+A+VG GYSGVELA
Sbjct: 114 GKTPLNMVSGASEYAIPFRAIPDAYRLEERLRYLEESEADK---IRIAIVGAGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
++ERL+ +G ++ I + I T NREAA K L R V + +
Sbjct: 171 CKLAERLKTRGRLRLIELSDQILRTSPEFNREAARKALEERGVWI-------------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E SV+ +I D S +Y KG + D+VLWTVG++ V P
Sbjct: 218 ETSVE--------SIGKDYISLEY--------KG-QVDTIPVDVVLWTVGTE-----VTP 255
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
N L L N RGQ T TL +P IFALGD + RD+ G+ +PATAQ AFQQ+DF
Sbjct: 256 VVNTL-PLKQNQRGQLVTTPTLQAVDYPDIFALGDLADCRDAEGQQVPATAQAAFQQSDF 314
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
A WN+WA++ +RPLLPFR+QNLGEMM LG ++A +S G+ L+G + + AR+LAYL
Sbjct: 315 AAWNIWASLTNRPLLPFRYQNLGEMMTLGMDNATLSGL---GLKLEGNLAYIARRLAYLY 371
Query: 501 RLPTDEHRLKVGVSWLTK 518
R+P+ H+LKVG +W+ +
Sbjct: 372 RMPSLNHQLKVGFNWIAQ 389
>gi|298492928|ref|YP_003723105.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
gi|298234846|gb|ADI65982.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
Length = 397
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 198/449 (44%), Positives = 265/449 (59%), Gaps = 63/449 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RF+F P LYELL+GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQLPWESTPKPEIILVDQSDRFLFSPFLYELLTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LL TGV+F + V + T V L++GL + YD LVL+LG
Sbjct: 67 PPYQELLQGTGVRFHQAVVSEI-------------DTDKQQVQLQNGLEIAYDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD+VPGA +A F ++ + R++ L LE K IR+A+VG GYSGVELA
Sbjct: 114 GETPLDLVPGATTYAHHFRSITEVYRLEESLRVLEASETEK---IRIAIVGAGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++R+ EKG + I + I T NR+AA K L R G F+ +
Sbjct: 171 CKLADRIGEKGRFRLIEISDQILRTSPEFNRQAAKKALETR------GVFI-------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHV 378
E V +I + S +Y ++Q+ E DLV+WTVG++ V
Sbjct: 218 ETKVV--------SIGENTISLEY-----------KTQVDEIPVDLVIWTVGTR-----V 253
Query: 379 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P + LPL N RGQ T L V HP IFALGD + D+ G+ +PATAQVAFQ
Sbjct: 254 AP---LVKTLPLKQNQRGQITTTSKLQVLEHPEIFALGDLADCLDTEGKQVPATAQVAFQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QAD+ WN+WA++ +RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + + AR+L
Sbjct: 311 QADYTAWNIWASLTNRPLLPFRYQQLGEMMALGVDNATLTGL---GIKLDGSLAYIARRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
AYL RLPT EH+LKVG SWL I +++
Sbjct: 368 AYLYRLPTLEHQLKVGFSWLVSPIIKTLS 396
>gi|428209968|ref|YP_007094321.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
gi|428011889|gb|AFY90452.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
Length = 397
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 265/442 (59%), Gaps = 56/442 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ +K P+++L+D+S+RF+F P+LYELL+GE+
Sbjct: 3 QQPARICILGGGFGGLYTALRLSQLPWESEK-PEIVLIDRSDRFLFSPLLYELLTGELQT 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLA+TG++F C + ++ + V L+ G+ + YD LV
Sbjct: 62 WEIAPPFVELLASTGIRF--------CQGEAAEID-----IYEQRVRLQDGIEIPYDRLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGA+ +AFPF TL DA R++ +L LE K IRVA+VG GYSG
Sbjct: 109 LALGGETPLDMVPGASSYAFPFRTLADAYRMEERLRLLEASTADK---IRVAIVGGGYSG 165
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL E+G + + + I T NREAA K L R + L
Sbjct: 166 VELACKLADRLGERGRFRLVELSDQILRTSPEFNREAATKALEKRGIWL----------- 214
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E V+ E AI LE + + I D+V+WT+G++
Sbjct: 215 --DLETKVESIEPNAIA------------LEYKNQVD-----IIPVDIVVWTIGTRV--- 252
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P R L N RGQ TL V P IFALGD + RD++ + +P TAQ A Q
Sbjct: 253 ---APIVRSLPLKQNQRGQLTATSTLQVIDRPEIFALGDLAECRDAAEQQVPGTAQAAVQ 309
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QAD+A WN+WA++ RPLLPFR+QNLGEMM LG + A ++ G+ L+GP+ AR+L
Sbjct: 310 QADYAAWNIWASLTHRPLLPFRYQNLGEMMTLGIDSATLTGL---GIKLEGPLAAIARRL 366
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
AYL RLPT +H++KVG++W+T+
Sbjct: 367 AYLYRLPTLDHQIKVGINWITR 388
>gi|428317320|ref|YP_007115202.1| NADH dehydrogenase [Oscillatoria nigro-viridis PCC 7112]
gi|428241000|gb|AFZ06786.1| NADH dehydrogenase [Oscillatoria nigro-viridis PCC 7112]
Length = 397
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 193/444 (43%), Positives = 264/444 (59%), Gaps = 59/444 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++PRICILGGGFGGLYTALRL L + +KP+++LVD+ +RF+F P+LYELL+GE+
Sbjct: 3 QQQPRICILGGGFGGLYTALRLSQLPFSTTEKPEIVLVDRRDRFLFVPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP FA+LL NTGV+F C G++ VLL G + D LV
Sbjct: 63 WEIAPPFAELLQNTGVRF--------CQGTVSGID-----VEEKRVLLHDGPEIPCDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+V GA E+A+ F TL+DA R++ +L LE N K IRVA+VG GYSG
Sbjct: 110 LALGGETPLDMVKGAVEYAYSFRTLDDAYRLEERLRFLEASNNDK---IRVAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL +KG V+ + I T NREAA K L R+V + L
Sbjct: 167 VELACKLADRLGDKGRVRLVEQTDMILRTSPEFNREAATKALEKRQVWIDL--------- 217
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
A+ I +D S Y KG + + D+VLWTVG++
Sbjct: 218 ------------ETAVEAIGSDTISLLY--------KG-QVDVLPVDIVLWTVGTQV--- 253
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
+ + LPL N RGQ + + + HP IFALGD + D++ + +P TAQ A
Sbjct: 254 -----SQAVRSLPLKQNRRGQLIVNSQMQIIDHPDIFALGDLAECHDATNQKVPGTAQTA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + H AR
Sbjct: 309 FQQADYTAWNIWASLTGRPLLPFRYQPLGEMMTLGNDNATLAGL---GIKLDGQLAHIAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTK 518
+LAYL R+PT +H+LKVG +W++K
Sbjct: 366 RLAYLYRMPTFDHQLKVGFNWISK 389
>gi|414076947|ref|YP_006996265.1| NADH dehydrogenase [Anabaena sp. 90]
gi|413970363|gb|AFW94452.1| NADH dehydrogenase [Anabaena sp. 90]
Length = 397
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 197/445 (44%), Positives = 261/445 (58%), Gaps = 55/445 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICILGGGFGGLYTALRL L W+ KP+++LVDQS+RFVF P+LYELL+ E+ WEIA
Sbjct: 7 KICILGGGFGGLYTALRLSQLPWESTPKPEIILVDQSDRFVFSPLLYELLTRELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +++LL TG+QF + V + ++ TV L + YD LVL+LG
Sbjct: 67 PPYSELLQGTGIQFHQAAVSAIDINEQ-------------TVQLADKSELNYDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD+VPGA A+PF T+ DA +++ +L LE N K IRVA+VG GYSGVELA
Sbjct: 114 GETPLDLVPGAVTHAYPFRTITDAYKLEERLRILEAANPEK---IRVAIVGAGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++R+ EKG + I + I T NREAA K L ++ G F+ +V
Sbjct: 171 CKLADRIGEKGRFRLIELSDQILRTSPEFNREAAKKALDSK------GVFIDLETKVA-- 222
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
A D+NS LE + + + D+V+WTVG+K V P
Sbjct: 223 ---------------AIDQNSIS--LEYKNQVDTI-----PVDVVIWTVGTK-----VSP 255
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
L L N RGQ T L HP IFALGD + D+ G+ +PATAQVAFQQAD+
Sbjct: 256 VVTAL-PLKQNQRGQITTTAQLQAIEHPEIFALGDLADCLDADGKQVPATAQVAFQQADY 314
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
WN+WA I +RPLLPFR+Q LGEMM LG ++A ++ GV LDG + AR+LAYL
Sbjct: 315 TAWNIWATITNRPLLPFRYQPLGEMMALGIDNATLTGL---GVQLDGSFAYLARRLAYLY 371
Query: 501 RLPTDEHRLKVGVSWLTKSAIDSVA 525
RLPT H+LKVG +WL I++++
Sbjct: 372 RLPTLNHQLKVGFNWLVSPIIEAIS 396
>gi|119486499|ref|ZP_01620557.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
gi|119456401|gb|EAW37532.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
Length = 400
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 188/444 (42%), Positives = 262/444 (59%), Gaps = 59/444 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L WQ ++P+++LVD +RF+F P+LYELL+GE+ +
Sbjct: 3 EQPTRICILGGGFGGLYTALRLNELPWQKSQQPEIILVDSRDRFLFSPLLYELLTGELQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F LL NT ++F + +L+ D V L G V YD+LV
Sbjct: 63 WEIAPPFEQLLQNTNIRFCQ---QLVTAID----------IEAQQVQLSEGEPVTYDYLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G E LD+VPGAAE+A PF TLED R++ +L LE + K IR+A+ G GYSG
Sbjct: 110 LAMGGETPLDIVPGAAEYAIPFRTLEDTYRLEERLRVLEASDRDK---IRIAIAGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL+E+G ++ I + I NREAA + L R++ + L V+ I
Sbjct: 167 VELACKLADRLQERGRLRLIERDQEILRGSPSFNREAAQRALQQRRIWVDLETTVQSI-- 224
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+D LE + I + D+VLWTVG+K + P
Sbjct: 225 -----------------------EADSLALEYREQIDTI-----PVDVVLWTVGTK-ISP 255
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
V+ LP+ N RGQ +L V HP IFALGD + +D G+ +P TAQ A
Sbjct: 256 IVQ-------SLPVKHNQRGQVSATTSLQVVDHPEIFALGDLADCKDVDGQTVPPTAQAA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ WN+WA++ RPLLPFR+Q LGEMM LG +DA ++ G+ L+G + H AR
Sbjct: 309 FQQADYTAWNIWASLTGRPLLPFRYQGLGEMMTLGTDDATLTGL---GIKLEGQMAHLAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTK 518
+L YL RLPT +H+++V +W+T+
Sbjct: 366 RLIYLYRLPTLDHQVRVAFNWMTR 389
>gi|411117162|ref|ZP_11389649.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410713265|gb|EKQ70766.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 399
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/440 (43%), Positives = 264/440 (60%), Gaps = 59/440 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + +KP++ LVD+ +RFVF P+LYEL++GE+ WE+A
Sbjct: 7 RICILGGGFGGLYTALRLSELPWANGEKPEIALVDRRDRFVFAPLLYELMTGELQDWEVA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF DLLA TGV ++ V + +D + L G Y LVL++G
Sbjct: 67 PRFQDLLAGTGVTVYQSTVAGIDLADK-------------RIQLHDGTEFPYTKLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E +++ VPGAAEFA PF T+ DA R++ +L LE + IRVA+VG GYSGVELA
Sbjct: 114 GETRMNKVPGAAEFALPFRTITDAYRLEARLQSLE---VSERDRIRVAIVGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL E+G ++ I + I T T NR+AA K L R + L +
Sbjct: 171 CKLADRLRERGRIRIIELTDQILRTSTEFNRQAADKALKDRDIWL-------------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
+ SV+ + AD S Y KG I DLVLWTVG++
Sbjct: 218 DTSVEA--------LTADTISLNY--------KGTVDMI-PVDLVLWTVGTQ-------- 252
Query: 381 PNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ + LPL N RGQ TL V HP +FALGD + +D++G+ + TAQVA QQA
Sbjct: 253 IADAIAALPLKKNQRGQITVTPTLQVVEHPDVFALGDLADCKDANGQQVATTAQVAIQQA 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ GWNLWA++ +RPLLPFR+Q+LGEMM LG N+A ++ G+TL+G AR+LAY
Sbjct: 313 DYVGWNLWASLTNRPLLPFRYQHLGEMMTLGINNATLTGL---GITLEGIPAVLARRLAY 369
Query: 499 LIRLPTDEHRLKVGVSWLTK 518
L R+PT +H+++VG++W+T+
Sbjct: 370 LYRMPTLDHQIRVGLNWITQ 389
>gi|254411184|ref|ZP_05024961.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196181685|gb|EDX76672.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 400
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 193/445 (43%), Positives = 264/445 (59%), Gaps = 55/445 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ R+CILGGGFGGLYTALRL L W+ ++P+++LVDQS+RFVF P+LYELL+GE+ W
Sbjct: 4 QTTRLCILGGGFGGLYTALRLSQLPWEKSQQPEIILVDQSDRFVFMPLLYELLTGELQTW 63
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP F +LLANTGV+F + V +G++ + V L+ G+ YD LVL
Sbjct: 64 EIAPPFEELLANTGVRFTQATV--------MGID-----SEQQRVQLQDGVEFAYDRLVL 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
SLG ++ VPG AE A PF + DA R++ +L LE + K IRVAVVG GYSGV
Sbjct: 111 SLGGVTPMESVPGVAEHAIPFRAIADAYRLEERLRILEESDAEK---IRVAVVGGGYSGV 167
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA ++ERL E+G ++ I I T NR+A+ L+ RKV + L
Sbjct: 168 ELACKLAERLGERGRIRLIEQGEMILKTSPEFNRKASQNALNERKVWIDL---------- 217
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
++ I+AD S Y KG + D+VLWTVG+
Sbjct: 218 -----------DTSVDAISADTISLLY--------KG-QVDTIPVDIVLWTVGT------ 251
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P R N RGQ TL V HP ++ALGD + RD++G+ +P TAQ AFQQ
Sbjct: 252 TVAPVVRSLPFKQNHRGQLMITPTLQVVDHPELYALGDLADCRDATGQQVPNTAQSAFQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
AD+A WN+WA++ RPLLPFR+Q+LGEMM LG ++A ++ G+ LDG H AR+LA
Sbjct: 312 ADYAAWNIWASLTGRPLLPFRYQHLGEMMTLGTDNATLTGL---GLKLDGVFAHLARRLA 368
Query: 498 YLIRLPTDEHRLKVGVSWLTKSAID 522
YL R+PT +H+LKVG++W+ + ++
Sbjct: 369 YLYRMPTLDHQLKVGLNWMAQPLLN 393
>gi|428225030|ref|YP_007109127.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
gi|427984931|gb|AFY66075.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
Length = 397
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 193/440 (43%), Positives = 263/440 (59%), Gaps = 59/440 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICILGGGFGGLYTALRL L W++ KP+++L+DQ +RF+F P+LYEL++GE++ WEIA
Sbjct: 7 KICILGGGFGGLYTALRLSQLPWENQPKPEIVLMDQHDRFLFLPLLYELVTGEMETWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +A+LLA+TG++F + V ++ VN V L+ ++YD+LVL+LG
Sbjct: 67 PPYAELLASTGIRFQQGCVA------NIDVNAK-------RVTLQDETALDYDYLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD VPG AE A PF + DA R+ +L LE K IRVA+ G GYSGVELA
Sbjct: 114 GETPLDGVPGVAEHAIPFRAIADAYRLQEQLRLLEASAAEK---IRVAIAGAGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL ++G ++ + + I T NR AA K L R V + L
Sbjct: 171 CKLADRLGDRGRIRLVELSDQILRTSPDFNRTAAQKALEERGVWIDL------------- 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
I ++ D S Y KG ++ D+VLWTVGSKP P V
Sbjct: 218 --------ETKIESVGPDSLSLLY--------KG-QTDTIPVDIVLWTVGSKP--PSV-- 256
Query: 381 PNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ LP N RGQ T TL V HP IFALGD + RD+ G+ + TAQ AFQ A
Sbjct: 257 ----VASLPFARNPRGQITTLSTLQVVDHPHIFALGDLADTRDAEGQQIAPTAQAAFQAA 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ GWNLWAAI RPLLPFR+Q+ GEM+ LG ++A ++ G+TLDG + H AR+LAY
Sbjct: 313 DYVGWNLWAAITGRPLLPFRYQHFGEMLSLGIDNATLTGL---GITLDGSLAHIARRLAY 369
Query: 499 LIRLPTDEHRLKVGVSWLTK 518
L R+PT +H++KVG++W+T+
Sbjct: 370 LYRMPTIDHQIKVGLNWMTQ 389
>gi|254424055|ref|ZP_05037773.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Synechococcus sp. PCC 7335]
gi|196191544|gb|EDX86508.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Synechococcus sp. PCC 7335]
Length = 396
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 184/437 (42%), Positives = 262/437 (59%), Gaps = 56/437 (12%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTAL L L W++ +++L+DQ +RFVF P+LYEL++GE+ WEIAP
Sbjct: 5 ICILGGGFGGLYTALALSKLDWEETPH-EIVLIDQRDRFVFAPLLYELVTGELQTWEIAP 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ +L+ANTG++F + + D++ +N TV L G + YD +VL+LG
Sbjct: 64 PYEELVANTGIRFHQSGI------DNIDINAQ-------TVELTDGESLRYDRIVLALGG 110
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
E +D+ PG AE A PF +LEDA R+ KL +LE N K IRVA+VG GYSGVE+A
Sbjct: 111 ETPMDMAPGVAEHAIPFRSLEDAYRLKDKLRQLENDNLEK---IRVAIVGGGYSGVEIAC 167
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
++ERL +KG V+ + I + NR+AAL L+ + V + ++E
Sbjct: 168 KIAERLGDKGRVRIVERANQILQSSPEFNRKAALDALNEKNVWI-------------DYE 214
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381
+V + + + DK D+VLWTVGSK V P
Sbjct: 215 TTVTEVTANSFSMSYKDK-----------------VDTLPVDIVLWTVGSK-----VSPA 252
Query: 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441
+ L DLP N RGQ TL V +P +FALGD + D+ G+ +P TAQ A QQAD+A
Sbjct: 253 LDAL-DLPRNERGQFTIAPTLQVIDYPHVFALGDLADGPDADGKSVPPTAQSALQQADYA 311
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 501
WN+WA+++DRPLLPFR+Q+LGEMM LG ++A ++ G+ L+G + H R+L YL R
Sbjct: 312 AWNIWASLSDRPLLPFRYQHLGEMMTLGTDNATLTGL---GIKLEGNLAHVVRRLTYLYR 368
Query: 502 LPTDEHRLKVGVSWLTK 518
+PT +H+++VG++WLT+
Sbjct: 369 MPTLDHQIRVGINWLTQ 385
>gi|428311718|ref|YP_007122695.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
gi|428253330|gb|AFZ19289.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
Length = 399
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 190/449 (42%), Positives = 264/449 (58%), Gaps = 55/449 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ ++P+++LVDQ++RF+F P+LYELL+GE+
Sbjct: 3 EQPTRICILGGGFGGLYTALRLSQLPWEKPQRPEIILVDQNDRFLFTPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + +LLANTGV+F + V G+N V L+ G YD LV
Sbjct: 63 WEIAPPYEELLANTGVRFTQAAVA--------GIN-----VEERQVQLQDGPDFTYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G E LD+ PG E+ F T+ DA R++ +L LE + K IRVA+VG GYSG
Sbjct: 110 LAMGGETPLDMAPGVMEYGIGFRTIADAYRLEERLRILEESDKEK---IRVAIVGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA ++ERL ++G ++ I + I T T NR+AA K L+ R V +
Sbjct: 167 VELACKLAERLGDRGRLRLIELSDMILRTSTDFNRDAAHKALNDRSVWI----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E SV +I D S Y KG + DLVLWTVG++
Sbjct: 216 --DLETSVA--------SIEPDTISLLY--------KG-QLDTIPVDLVLWTVGTRV--- 253
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P R L + RGQ TL HP IFALGD + D+ G+ +P TAQ AFQ
Sbjct: 254 ---APVVRALSLKQSQRGQLTVTPTLQAIDHPEIFALGDLADCHDAEGQQVPNTAQAAFQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QAD+ WN+WA++ RPLLPFR+Q+LGEMM LG ++A + G+ LDGP+ + R+L
Sbjct: 311 QADYTAWNIWASLTGRPLLPFRYQHLGEMMTLGIDNATFTGL---GIKLDGPLAYLTRRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
AYL R+PT +H+LKVG++W+ + ++ ++
Sbjct: 368 AYLYRMPTLDHKLKVGLNWIAQPFVEMLS 396
>gi|186682054|ref|YP_001865250.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Nostoc
punctiforme PCC 73102]
gi|186464506|gb|ACC80307.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Nostoc
punctiforme PCC 73102]
Length = 397
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 198/451 (43%), Positives = 271/451 (60%), Gaps = 59/451 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQNSRICILGGGFGGLYTALRLSQLPWESTQKPEIVLVDQSDRFLFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TGV+F++ V G++ V + G + YD LV
Sbjct: 63 WEIAPPFEELLQGTGVRFYQGVVS--------GID-----IEQQRVDIHEGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGAA + +PF T+ DA R++ +L LE + K IRVA++G GYSG
Sbjct: 110 LALGGETPLDLVPGAAAYGYPFRTISDAYRLEERLRFLEESDADK---IRVAIIGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL E+G + + + I T NREAA K L AR V L
Sbjct: 167 VELACKLADRLGERGRFRIVEIADQILRTSPEFNREAAKKALDARGVFL----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E V+ E +I LE + + + DLV+WTVG+K + P
Sbjct: 216 --DLETKVELIEQNSI------------TLEYKNQLDTIP-----VDLVIWTVGNK-VAP 255
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
V+ LPL N RGQ T L V HP IFALGD + D G+ +PATAQ A
Sbjct: 256 VVK-------SLPLKQNQRGQINTTSNLQVIDHPEIFALGDLADCHDVEGQQVPATAQAA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ WN+WA++ +RPLLPF +Q LGEMM LG+N+A ++ G+ LDGP+ AR
Sbjct: 309 FQQADYTAWNIWASLTNRPLLPFHYQQLGEMMTLGKNNATLTGL---GIKLDGPLASVAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
++AYL RLPT +H+LKVG +WL + I++++
Sbjct: 366 RIAYLYRLPTLDHQLKVGFNWLVRPIIETLS 396
>gi|220906867|ref|YP_002482178.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7425]
gi|219863478|gb|ACL43817.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7425]
Length = 414
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 192/460 (41%), Positives = 265/460 (57%), Gaps = 63/460 (13%)
Query: 72 YTWPDK----KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY 127
YT P++ ++ +ICILGGGF GLYTALRL W + KP + LVDQS+RF+F P LY
Sbjct: 12 YTSPEQSAQPQRQQICILGGGFAGLYTALRLSQFPWNESSKPNITLVDQSDRFLFVPFLY 71
Query: 128 ELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187
EL++GE+ WEIAP F ++L NTGV+F + V+ + V L +G
Sbjct: 72 ELVTGELQTWEIAPPFEEILVNTGVRFIQSSVEDIRIDQR-------------QVQLGNG 118
Query: 188 LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRV 247
+ YD LVL+LG E LD+VPGA + A PF T+ DA R++ +L LE IRV
Sbjct: 119 QTLTYDRLVLALGGETPLDMVPGAKDHAIPFRTIADAYRLEERLRALEE---SPQDRIRV 175
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
A+VG G SGVELA +S+RL +G ++ I+ I P + ALK L R V + L
Sbjct: 176 AIVGAGPSGVELACKLSDRLSPRGRLRLIDRNDQILKFSAPFTQSTALKALEQRDVWIDL 235
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
++ +D+ +E KG +I DLVLW
Sbjct: 236 ETTPTAVQ-------------------------ADRLFVE----YKGQVDEI-PVDLVLW 265
Query: 368 TVGSKPLLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
TVG+K + LPL N RGQ T TL V HP IFALGD + RD+ G+
Sbjct: 266 TVGTK--------VAESIRRLPLKHNERGQLFTTPTLQVMDHPEIFALGDLAECRDAEGK 317
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
+P+TAQ AFQQAD+AGWN+WA++ DRPLLPFR+ +LGEM+ LG + AA++ G+ L
Sbjct: 318 QVPSTAQAAFQQADYAGWNIWASLRDRPLLPFRYSHLGEMLTLGIDSAALAGL---GLKL 374
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+GP+ + R+LAYL R+PT EH+LKVG++W+ + +++ A
Sbjct: 375 EGPLAYLIRRLAYLYRMPTLEHQLKVGLNWILRPLLETSA 414
>gi|334117495|ref|ZP_08491586.1| NADH dehydrogenase [Microcoleus vaginatus FGP-2]
gi|333460604|gb|EGK89212.1| NADH dehydrogenase [Microcoleus vaginatus FGP-2]
Length = 397
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 263/448 (58%), Gaps = 59/448 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++PRICILGGGFGGLYTALRL L + +KP+++LVD+ +RF+F P+LYELL+ E+
Sbjct: 3 QQQPRICILGGGFGGLYTALRLSQLPFSKTEKPEIVLVDRRDRFLFVPLLYELLTDELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP FA+LL TGV+F C G++ V L G + D LV
Sbjct: 63 WEIAPPFAELLQKTGVRF--------CQGTVSGID-----VEEKRVQLHDGPEIPCDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+V GA E+A+ F TL+DA R++ +L LE N K IRVA+VG GYSG
Sbjct: 110 LALGGETPLDMVKGAVEYAYSFRTLDDAYRLEERLRFLEASNNDK---IRVAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL EKG V+ + I T NREAA + L RKV +
Sbjct: 167 VELACKLADRLGEKGRVRLVEQGDMILRTSPEFNREAASQALEKRKVWI----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E V+ E+ I + KG + + D+VLWTVG++
Sbjct: 216 --DLETEVEAIEAETISLL----------------YKG-QLDVLPVDIVLWTVGTQ---- 252
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
+ + LPL N RGQ + + + HP IFALGD + D++G+ +P TAQ A
Sbjct: 253 ----VSQAVRSLPLKQNRRGQLIVNSQMQIIDHPDIFALGDLAECHDATGQKVPGTAQTA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+ WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + H AR
Sbjct: 309 FQQADYTAWNIWASLTGRPLLPFRYQPLGEMMTLGIDNATLAGL---GIKLDGQLAHIAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAID 522
+LAYL R+PT +H+LKVG +W++K D
Sbjct: 366 RLAYLYRMPTFDHQLKVGFNWISKPIQD 393
>gi|282900233|ref|ZP_06308186.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cylindrospermopsis raciborskii CS-505]
gi|281194875|gb|EFA69819.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cylindrospermopsis raciborskii CS-505]
Length = 413
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 193/448 (43%), Positives = 263/448 (58%), Gaps = 63/448 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTALRL L W + +KP+++L+DQ +RF+F P+LYELL+ E+ WEIAP
Sbjct: 20 ICILGGGFGGLYTALRLSQLDWGNTEKPEIVLIDQGDRFIFSPLLYELLTNELQTWEIAP 79
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ ++L NTGV F + +V + T V L G I Y LVL+LG+
Sbjct: 80 SYQEILENTGVHFHQAKVSEI-------------DTDNQQVKLCDGKIFPYHRLVLALGS 126
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
E LD+VPGA + A+PF T+ D R++ +L L + K IRVA+VG GYSGVELA
Sbjct: 127 ETNLDLVPGAVKHAYPFRTIYDVHRLEERLRILTATDPEK---IRVAIVGAGYSGVELAC 183
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
+++RL EKG ++ I I T + NR+ A K L + V F+ + E
Sbjct: 184 KLADRLGEKGRLRLIETGDQILRTSSEFNRQQAKKALEQKSV------FI-------DLE 230
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHVE 379
V +I + S +Y ++QI E DLV+WTVG++
Sbjct: 231 TKV--------VSIGENTISLEY-----------KNQIDEIPVDLVIWTVGTR------- 264
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
++ +LPL N RGQ TL V HP IFALGD + +D + LP TAQVAFQQ
Sbjct: 265 -ISSLAQNLPLAHNQRGQITCTPTLQVIEHPEIFALGDLADCKDIEEQQLPGTAQVAFQQ 323
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
AD+A WN+WA++ DRPLLPFR+Q LGE+M LG ++A ++ G+TLDG +G+ R+L
Sbjct: 324 ADYAAWNIWASLTDRPLLPFRYQALGEVMALGVDNATLTAL---GITLDGYLGYLVRRLV 380
Query: 498 YLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
YL RLPT EH+LKVG SWL I +++
Sbjct: 381 YLYRLPTLEHQLKVGFSWLLTPIIKTLS 408
>gi|427715899|ref|YP_007063893.1| NADH dehydrogenase [Calothrix sp. PCC 7507]
gi|427348335|gb|AFY31059.1| NADH dehydrogenase [Calothrix sp. PCC 7507]
Length = 397
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 196/453 (43%), Positives = 274/453 (60%), Gaps = 63/453 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RI ILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQTSRIVILGGGFGGLYTALRLSQLHWESTQKPEIVLVDQSDRFLFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLANTGV+F++ V + + L V L+ G + YD LV
Sbjct: 63 WEIAPPFTELLANTGVRFYQAVVAGIDTTQQL-------------VQLQDGPELAYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+V GA +A+PF T+ DA R++ +L LE + K IRVA+ G GYSG
Sbjct: 110 LALGGETPLDLVAGATSYAYPFRTITDAYRLEERLRVLEASDADK---IRVAIAGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL+++G + I++ I T NREAA K L AR V + L
Sbjct: 167 VELACKLADRLKDRGRFRLIDIADQILRTSPDFNREAAKKALDARNVFIDL--------- 217
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPL 374
I +I D S +Y ++Q+ DLV+WTVG++
Sbjct: 218 ------------DTKIESIGPDTISLEY-----------KNQVDTIPVDLVIWTVGTR-- 252
Query: 375 LPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
++ + LPL N RGQ T TL V HP IFALGD + D+ G+ +PATAQ
Sbjct: 253 ------VSSVVKSLPLKQNQRGQISTTPTLQVFDHPEIFALGDLADTLDAEGQQVPATAQ 306
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 492
AFQQAD+ WN+WA++ +RPLLPFR+Q LGEM+ LG ++A ++ G+ LDGP+ +
Sbjct: 307 AAFQQADYTAWNIWASLTNRPLLPFRYQKLGEMLALGIDNATLTGL---GIKLDGPLAYV 363
Query: 493 ARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
R+LAYL RLPT +H+LKVG +WL + I++++
Sbjct: 364 GRRLAYLYRLPTLDHQLKVGFNWLVRPIIETLS 396
>gi|113477135|ref|YP_723196.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Trichodesmium erythraeum IMS101]
gi|110168183|gb|ABG52723.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Trichodesmium erythraeum IMS101]
Length = 398
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 189/450 (42%), Positives = 264/450 (58%), Gaps = 63/450 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K RICILGGGFGGLYTALRL W+ KKP+++L+D+ +RF+F P+LYEL++GE+
Sbjct: 3 EKTQRICILGGGFGGLYTALRLIQFPWESSKKPEIILIDKRDRFLFAPLLYELVTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLANT + F C G++ + V LE+G Y LV
Sbjct: 63 WEIAPPFEELLANTDIHF--------CQGVVSGID-----LNQQQVELENGQAFSYHRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G E +++VPGAAE+A PF T+ DA R+ KL LE K IR+AV+G GYSG
Sbjct: 110 LAMGGETPIEMVPGAAEYAIPFRTVNDAYRLQEKLRVLEASEREK---IRIAVIGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL+EKG ++ + I T NRE+A K LS + + +
Sbjct: 167 VELACKLADRLQEKGRIRLVERNNMILGTSPDFNRESATKALSEKNIWI----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPL 374
+ E V+ +I A + S KY + Q+ D+VLWTVG+K +
Sbjct: 216 --DLETEVE--------SIEATQISLKY-----------QEQVDTIPVDIVLWTVGTK-V 253
Query: 375 LPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P VE LPL N R Q T TL V+ + +IFA+GD + +D+ G+ +P TAQ
Sbjct: 254 APVVE-------SLPLTKNERQQIITSATLQVQDNQKIFAIGDLADCQDADGQKVPTTAQ 306
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 492
VA QQ+D+ WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ G+ LDG I +
Sbjct: 307 VAIQQSDYVAWNIWASLTGRPLLPFRYQALGEMMALGLDNATLTSL---GIKLDGQIAYM 363
Query: 493 ARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
AR+L YL RLPT EH++KV +W+ D
Sbjct: 364 ARRLVYLYRLPTLEHQIKVAFNWMINPIQD 393
>gi|282896665|ref|ZP_06304673.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Raphidiopsis brookii D9]
gi|281198383|gb|EFA73271.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Raphidiopsis brookii D9]
Length = 404
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 190/448 (42%), Positives = 265/448 (59%), Gaps = 63/448 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTALRL L W + +KP+++LVDQ +RF+F P+LYEL++ E+ WEIAP
Sbjct: 16 ICILGGGFGGLYTALRLSQLDWGNTEKPEIVLVDQGDRFIFSPLLYELMTNELQTWEIAP 75
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ ++L NTGV F + +V + T V L G I Y LVL+LG+
Sbjct: 76 LYQEILENTGVHFHQAKVSEI-------------DTDNQQVKLCDGKIFPYHRLVLALGS 122
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
E LD+VPGA + A+PF ++ D +++ +L L R+ K IRVA+VG GYSGVELA
Sbjct: 123 ETNLDLVPGAVKHAYPFRSICDVQQLEERLRILTARDLEK---IRVAIVGAGYSGVELAC 179
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
+++RL EKG ++ I + I T + NR+ A K L + G F+ + E
Sbjct: 180 KLADRLGEKGRLRLIEIGDQILRTSSDFNRQQAKKALEQK------GVFI-------DLE 226
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHVE 379
V +I + S +Y ++QI E DLV+WT+G++
Sbjct: 227 TKV--------ASIGENTISLEY-----------KNQIDEIPVDLVIWTIGTR------- 260
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
++ + +L L N RGQ TL V HP IFALGD + +D + LP TAQVAFQQ
Sbjct: 261 -ISSLVQNLTLAHNQRGQITCTPTLQVVEHPEIFALGDLADCKDIEEKQLPGTAQVAFQQ 319
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
AD+A WN+WA++ DRPLLPFR+Q LGE+M LG ++A ++ G+TLDG +G+ R+L
Sbjct: 320 ADYAAWNIWASLTDRPLLPFRYQPLGEVMALGVDNATLTAL---GITLDGYLGYLVRRLV 376
Query: 498 YLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
YL RLPT EH+LKVG SWL I +++
Sbjct: 377 YLYRLPTLEHQLKVGFSWLLTPIIKTLS 404
>gi|443318950|ref|ZP_21048191.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
gi|442781484|gb|ELR91583.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
Length = 397
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 189/444 (42%), Positives = 257/444 (57%), Gaps = 59/444 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL +L W + +V+LVDQ +RFVF P+LYEL++GE+ WE+A
Sbjct: 7 RICILGGGFGGLYTALRLSTLPWSQQEPVEVVLVDQRDRFVFAPLLYELVTGELQTWEVA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +A+LLANT V+F ++ V + D V L + YD LVL++G
Sbjct: 67 PPYAELLANTPVRFIQNEVSGISLGDR-------------QVFLPDQEPLTYDRLVLAVG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD VPG A+ A PF T+EDA R+ +L LE ++RVAVVG GYSGVELA
Sbjct: 114 GETPLDGVPGVADHAIPFRTVEDAQRLQERLRHLEASTA---EVLRVAVVGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL E+G ++ + I T T NR+AA + LS R V + L V +
Sbjct: 171 CKLADRLGERGRIRLVERADDILLTSTEFNRKAAQQALSERGVWIDLDTTVGSV------ 224
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHV 378
+D+ L + + + D+VLWTVG++ PLL +
Sbjct: 225 -------------------GTDRLTLNYREQVDEI-----PVDIVLWTVGTRVSPLLAGL 260
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
DLP N R Q TL V HP IFALGD + +D+ G+ +P TAQ A QQA
Sbjct: 261 --------DLPKNNRQQLLVQSTLQVVDHPHIFALGDLADCKDADGQQVPTTAQSALQQA 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+AGWNLWA++ RPLLPF +Q+LGEMM LG ++A ++ GV LDG + H AR+L Y
Sbjct: 313 DYAGWNLWASLTHRPLLPFHYQHLGEMMALGVDNATLTGL---GVQLDGVLAHVARRLTY 369
Query: 499 LIRLPTDEHRLKVGVSWLTKSAID 522
L R+PT H+++VG++W+ K D
Sbjct: 370 LYRMPTLSHQIRVGLNWIEKPLRD 393
>gi|428776793|ref|YP_007168580.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halothece sp. PCC 7418]
gi|428691072|gb|AFZ44366.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halothece sp. PCC 7418]
Length = 398
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 264/442 (59%), Gaps = 55/442 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K RICILGGGFGGLYTALRL L W P++ LVDQ +RF+F P+LYELL+ E+
Sbjct: 3 ESKHRICILGGGFGGLYTALRLSQLPWDHHGVPEITLVDQRDRFLFTPLLYELLTDELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F+++LA+T ++F + V L V + + YD LV
Sbjct: 63 WEIAPPFSEILADTSIEFVQGTVTDLNVKRQ-------------QVQIADQPSLNYDSLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G + +++VPGA EFAFPF +L+DA +++ KL LE + K IR+A+VG GYSG
Sbjct: 110 LAMGGKTPMEMVPGAQEFAFPFHSLKDAYQLEEKLRSLENSDREK---IRIAIVGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA + +R+ ++G ++ I I T NRE A K L R V +
Sbjct: 167 VELACKLRDRVGDRGRIRIIERGELILKTSPDFNRETARKALVDRDVWM----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E SV++ I AD+ + Y KG +S D+V WTVG+
Sbjct: 216 --DTETSVER--------ITADEITLLY--------KG-QSDTIPVDIVAWTVGT----- 251
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P + DLP + G+ + + TL V+GHP IFALGD + +D SG+ +PATAQVAFQ
Sbjct: 252 -TVPELVKNLDLPHHETGKIKVEPTLQVEGHPAIFALGDLAFCQDGSGKVVPATAQVAFQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q+D+ WNLWA + RPLLPF++ NLGEM++LG ++A+++ +GV LDG + + AR+L
Sbjct: 311 QSDYCAWNLWATLTGRPLLPFKYYNLGEMLVLGTDNASLTS---QGVKLDGIVAYLARRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
AYL R+PT EH+L VG +W+T+
Sbjct: 368 AYLSRMPTPEHQLTVGSNWITQ 389
>gi|300863742|ref|ZP_07108673.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Oscillatoria sp. PCC 6506]
gi|300338249|emb|CBN53819.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Oscillatoria sp. PCC 6506]
Length = 397
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 192/442 (43%), Positives = 261/442 (59%), Gaps = 55/442 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++PRICILGGGFGGLYTALRL L + +KP+++LVD+ +RF+F P+LYE+L+GE+
Sbjct: 3 QQQPRICILGGGFGGLYTALRLSQLPFAKPQKPEIILVDRCDRFLFSPLLYEILTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL +TG++F + V + ++ V L+ G + D LV
Sbjct: 63 WEIAPPFEELLKDTGIRFCQGTVAAIDITEK-------------RVQLQDGPEITCDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E L++V GAAE AFPF T+ DA R++ +L LE K IRVAVVG GYSG
Sbjct: 110 LALGGETPLNLVSGAAEHAFPFRTISDAYRLEERLRILESSQSDK---IRVAVVGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +S+RL E+G ++ I I T NREAA L R+V +
Sbjct: 167 VELACKLSDRLGERGRLRLIEQSDKILQTSPDFNREAANIALEKRRVWI----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E SV ES I + KG + I D VLWTVG
Sbjct: 216 --DLETSVDAIESDTISLV----------------YKG-QIDILPVDAVLWTVGMI---- 252
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
V P LH L N RGQ + TL V +P IFALGD + D+ G+ +P++AQVAFQ
Sbjct: 253 -VSPMVRSLH-LQQNIRGQLIVEPTLQVVDNPGIFALGDITECVDADGQKVPSSAQVAFQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QAD+ WN+WA++ DRPLLPFR+Q LGEM+ LG ++A + G+ LDG + H AR+L
Sbjct: 311 QADYTAWNIWASLTDRPLLPFRYQPLGEMLTLGVDNATFAGL---GIKLDGQMAHVARRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
AYL R+PT +H++KVG +W+ +
Sbjct: 368 AYLYRMPTLDHQIKVGFNWIAR 389
>gi|434395007|ref|YP_007129954.1| NADH dehydrogenase [Gloeocapsa sp. PCC 7428]
gi|428266848|gb|AFZ32794.1| NADH dehydrogenase [Gloeocapsa sp. PCC 7428]
Length = 395
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 199/443 (44%), Positives = 271/443 (61%), Gaps = 60/443 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQPARICILGGGFGGLYTALRLSQLPW-SSQKPEIVLVDQSDRFLFSPLLYELLTGELQT 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F+++LA TGV+F+++ V + D V L+ G+ + YD LV
Sbjct: 62 WEIAPPFSEILAGTGVRFYQESVTEINIDDQ-------------RVRLQDGVEIPYDRLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+V GA +AFPF T++DA R++ +L LE K IR+A+VG GY G
Sbjct: 109 LALGGETPLDMVAGATSYAFPFRTIDDAYRLEARLRRLEESPVDK---IRIAIVGGGYCG 165
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RLE + ++ I + I T NR AA K L AR V +
Sbjct: 166 VELACKLADRLENRARIRLIEMTDQILRTSPEHNRVAANKALEARGVWI----------- 214
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E SV++ E AI LE + + + D+V+WTVG++
Sbjct: 215 --DLETSVQEVEPQAIA------------LEYKNQVDTIP-----VDIVIWTVGTR---- 251
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
V P + LPL N RGQ T TL V HP IFALGD + RD G+ +PATAQ A
Sbjct: 252 -VAPV---VRSLPLKQNQRGQLTTTSTLQVIDHPEIFALGDLADCRDVEGQQVPATAQAA 307
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+AGWN+WA++ RPLLPFR+Q+LGEMM LG ++A + G+ LDGP+ + AR
Sbjct: 308 FQQADYAGWNVWASLTQRPLLPFRYQHLGEMMTLGTDNATFTGL---GIQLDGPLAYVAR 364
Query: 495 KLAYLIRLPTDEHRLKVGVSWLT 517
+LAYL R+PT H+LKVG++W+T
Sbjct: 365 RLAYLYRMPTLGHKLKVGINWIT 387
>gi|428214301|ref|YP_007087445.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoria acuminata
PCC 6304]
gi|428002682|gb|AFY83525.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoria acuminata
PCC 6304]
Length = 401
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 186/443 (41%), Positives = 267/443 (60%), Gaps = 59/443 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RICILGGGFGGLY ALRL L W P+++L+D ++RF+F P+LYELL+GE+ +W
Sbjct: 3 EKARICILGGGFGGLYAALRLSELPWNPSATPEIVLIDNNDRFLFSPLLYELLTGELQSW 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP F++LLANT V+F + V + + V LE G+ YD ++
Sbjct: 63 EIAPPFSELLANTRVRFHQGTVSEINLENR-------------QVHLEDGVEFSYDRAIV 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+LG E LD+VPG+A++AFPF T+ DA R++ +L LE + K IR+AVVG GYSGV
Sbjct: 110 ALGGETPLDLVPGSADYAFPFRTIADAYRLEERLRLLEASDQDK---IRIAVVGGGYSGV 166
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA +++RL+ +G ++ + + T I T T NREAA K L R + +
Sbjct: 167 ELACKLADRLQNRGRLRLVEMGTEILRTSTEFNREAATKALEERGIWI------------ 214
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
+ E + ++ I AD S Y ++ P D+V+WTVG++
Sbjct: 215 -DLETTTQE--------ITADSISLLYRGQVDP---------IPVDVVIWTVGTQ----- 251
Query: 378 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ + LP+ RGQ E TL HP +FA+GD + D+SG+P+P TAQ A
Sbjct: 252 ---VASVVQSLPVKHTERGQIEVTRTLQAIDHPELFAVGDLAYSLDASGQPVPTTAQAAM 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
QQAD+A WN+WA+++DRPLLPF +Q LGEMM LG ++A ++ GV LDG + H R+
Sbjct: 309 QQADYAAWNVWASLSDRPLLPFEYQGLGEMMTLGIDNATLTGL---GVKLDGQMAHLLRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTK 518
LAYL R+PT +H+LKVG++W+T+
Sbjct: 366 LAYLYRMPTFDHQLKVGLNWITQ 388
>gi|428297657|ref|YP_007135963.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Calothrix sp. PCC 6303]
gi|428234201|gb|AFY99990.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Calothrix sp. PCC 6303]
Length = 405
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 198/456 (43%), Positives = 271/456 (59%), Gaps = 67/456 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ +ICILGGGFGGLYTALRL L W+ DKKP+++LVDQS+RF+F P+LYELL+ E++
Sbjct: 3 QQSAKICILGGGFGGLYTALRLSKLPWEGDKKPEIVLVDQSDRFLFSPLLYELLTRELET 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLANTGV+F C VN H L+ G + YD LV
Sbjct: 63 WEIAPPFVELLANTGVRF--------CQGTVAKVNIEQRLVH-----LQDGSDISYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E +D+VPGA A+PF + DA R++ +L LE K IR+A+VG GYSG
Sbjct: 110 LALGGETPMDLVPGAEAHAYPFRNVNDAYRLEERLRILEESETDK---IRIAIVGAGYSG 166
Query: 257 VELAATVSERLEEK--------GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
VELA +++RL +K ++ + + I T NREAA K L A+ G
Sbjct: 167 VELACKLADRLGDKSPDRSRDRARLRLVELSDKILGTSPKFNREAATKALEAK------G 220
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
F+ + E V+ +I+ D S +Y ++ +LV+WT
Sbjct: 221 VFI-------DLETKVE--------SISQDSMSLEYKEQV---------DTIPVELVIWT 256
Query: 369 VGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
VG++ V P + LP +N RGQ + T+ V HP IFALGD +D+ G+
Sbjct: 257 VGTR-----VSPV---VQSLPFQVNQRGQIQVTSTMQVLEHPEIFALGDLVDCQDAEGQK 308
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
+PATAQ AFQQAD+ GWN+WA++ +RPLLPFR+Q LGEM+ LG ++ ++ GVTLD
Sbjct: 309 IPATAQAAFQQADYTGWNIWASLTNRPLLPFRYQYLGEMITLGVDNTTLAGL---GVTLD 365
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
GP + AR+LAYL R+PT EH+LKVG +WLT+ ID
Sbjct: 366 GPFANIARRLAYLYRMPTLEHQLKVGFNWLTRPVID 401
>gi|158335839|ref|YP_001517013.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acaryochloris marina MBIC11017]
gi|158306080|gb|ABW27697.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Acaryochloris marina MBIC11017]
Length = 397
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 189/448 (42%), Positives = 257/448 (57%), Gaps = 57/448 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ +P ICILGGGFGGLYTALRL L W D+++P + LVDQ++ F+F P+LYEL++GE+ +
Sbjct: 3 EHQPTICILGGGFGGLYTALRLSQLPW-DEQQPLIYLVDQNDHFLFSPLLYELVTGELQS 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP +++LLANT V+F + VK + + V L S + YD LV
Sbjct: 62 WEIAPPYSELLANTEVRFIQSAVKEIDVAQQ-------------QVTL-SDQSISYDRLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E L VPG+AE+A PF T++DA R++ +L LE K IRVAVVG G SG
Sbjct: 108 LALGGETPLHQVPGSAEYALPFRTVQDAYRLEDRLRTLETSAAPK---IRVAVVGAGPSG 164
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL ++G ++ I I + N+ AA K L R+V
Sbjct: 165 VELACKLADRLGDRGRIRLIERNNQILKSAPEFNQTAAQKALEKRQVW------------ 212
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E S++ +S + DK + DLVLWTVG+ P
Sbjct: 213 -TDLETSIESLDSHEMTLSYKDK-----------------TDTLPVDLVLWTVGTAIAAP 254
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P LP N GQ TD TL V+ P IFALGD + RD G P P TAQVA Q
Sbjct: 255 IQALP------LPQNDLGQLLTDSTLQVQDSPHIFALGDLADCRDPQGNPNPKTAQVAIQ 308
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QAD GWNLWA++ RPLLPF + +LGEM+ LG + AA+S G+ LDGP+ AR+L
Sbjct: 309 QADCVGWNLWASLTQRPLLPFHYTHLGEMLTLGEDSAAMSGL---GLQLDGPLAFMARRL 365
Query: 497 AYLIRLPTDEHRLKVGVSWLTKSAIDSV 524
YL R+PT +H+LK+G +W+ K + ++
Sbjct: 366 IYLYRMPTLDHQLKIGFNWMFKPVLSAL 393
>gi|291566917|dbj|BAI89189.1| type 2 NADH dehydrogenase [Arthrospira platensis NIES-39]
Length = 398
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 182/442 (41%), Positives = 260/442 (58%), Gaps = 55/442 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++ RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ A
Sbjct: 3 EQRTRICILGGGFGGLYTALRLTQLPWLPTQSPEITIVDSRDRFVFAPLLYELVTGELQA 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F LL +T ++F + G + T V L+ G ++YD LV
Sbjct: 63 WEIAPPFQQLLQDTPIRFIQ------------GTVADIDIT-AQQVQLQDGQFLDYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G E LD+VPGA ++A PF +EDA R+ ++L LE + K IRVA++G GYSG
Sbjct: 110 LAMGGETPLDIVPGAQQYAIPFRRVEDAYRLQQRLRLLEASDAEK---IRVAIIGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA ++ERL ++G ++ ++ I + NREAA K LS R+V L
Sbjct: 167 VELACKLAERLGKRGRLRLVDRGEEILKSAPDFNREAAQKALSERQVWL----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E +VK ++ +I LE + + L D+V+WTVG++
Sbjct: 216 --DLETTVKSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ---- 252
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P R L N+ Q + L V HP IFALGD + D+ G+ +P TAQ AFQ
Sbjct: 253 --TPDIVRSLPLKQNSEHQIIINPKLQVIEHPEIFALGDLADSHDAEGKKVPKTAQAAFQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QAD+AGWNLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L
Sbjct: 311 QADYAGWNLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
YL RLPT EH+++V +W+++
Sbjct: 368 IYLYRLPTWEHQMRVAFNWISR 389
>gi|354566051|ref|ZP_08985224.1| NADH dehydrogenase [Fischerella sp. JSC-11]
gi|353546559|gb|EHC16007.1| NADH dehydrogenase [Fischerella sp. JSC-11]
Length = 397
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 205/451 (45%), Positives = 273/451 (60%), Gaps = 59/451 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RFVF P+LYELL+GE+
Sbjct: 3 EHKTRICILGGGFGGLYTALRLSQLPWESLPKPEIVLVDQSDRFVFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL +TGV+F++ V G++ T V L+ G + YD LV
Sbjct: 63 WEIAPPFEELLTDTGVRFYQAAVS--------GID-----TQQRRVYLQDGPEIGYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGA +A+PF T+ D R++ +L LE + K IRVA+VG GYSG
Sbjct: 110 LALGGETPLDIVPGATCYAYPFRTVTDVYRLEERLRVLEESDTDK---IRVAIVGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL +G + I + I T NREAA K L R G F+ R
Sbjct: 167 VELACKLADRLGSRGRFRLIELTDQILRTSPEFNREAARKALEER------GIFIDLETR 220
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
V EA IA D S +Y KG I DLV+WTVG +
Sbjct: 221 V---EA------------IAQDTISLEY--------KGQVDNI-PVDLVIWTVGIR---- 252
Query: 377 HVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
V P + +LPL N RGQ T TL V HP IFALGD + RD+ G+ +PATAQ A
Sbjct: 253 -VSPV---VRNLPLKQNQRGQITTTPTLQVLDHPEIFALGDLAECRDAEGQLVPATAQAA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQAD+A WN+WA + RP +PFR+Q+LGEMM LG ++A ++ G+ L+G + + AR
Sbjct: 309 FQQADYAAWNIWANLTHRPQIPFRYQHLGEMMALGTDNATLTGL---GIKLEGSLAYVAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+LAYL R+PT +H+LKVG +WL + I++++
Sbjct: 366 RLAYLYRMPTLDHKLKVGFNWLARPIIETLS 396
>gi|409990772|ref|ZP_11274103.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis str. Paraca]
gi|409938372|gb|EKN79705.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis str. Paraca]
Length = 399
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 256/438 (58%), Gaps = 55/438 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLTQLPWLPTQSPEITIVDSRDRFVFAPLLYELVTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F LL +T ++F + G + T V L+ G ++YD LVL++G
Sbjct: 67 PPFQQLLQDTPIRFIQ------------GTVADIDIT-AQQVQLQDGQFLDYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD+VPGA ++A PF +EDA R+ +L LE + K IRVA++G GYSGVELA
Sbjct: 114 GETPLDIVPGAQQYAIPFRRVEDAYRLQERLRLLEASDAEK---IRVAIIGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
++ERL ++G ++ ++ I + NREAA K LS R+V L +
Sbjct: 171 CKLAERLGKRGRLRLVDRGEEILKSAPDFNREAAQKALSERQVWL-------------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E +VK ++ +I LE + + L D+V+WTVG++ P
Sbjct: 218 ETTVKSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ------TP 254
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
R L N+ Q + L V HP IFALGD + D+ G+ +P TAQ AFQQAD+
Sbjct: 255 DIVRSLPLKQNSEHQIIINPKLQVIEHPEIFALGDLADSHDAEGKKVPKTAQAAFQQADY 314
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
AGWNLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L YL
Sbjct: 315 AGWNLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRLIYLY 371
Query: 501 RLPTDEHRLKVGVSWLTK 518
RLPT EH+++V +W+++
Sbjct: 372 RLPTWEHQMRVAFNWISR 389
>gi|359459750|ref|ZP_09248313.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acaryochloris sp. CCMEE 5410]
Length = 397
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 188/448 (41%), Positives = 262/448 (58%), Gaps = 57/448 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ +P ICILGGGFGGLYTALRL L W D+++P + LVDQ++ F+F P+LYEL++GE+ +
Sbjct: 3 EHQPTICILGGGFGGLYTALRLSQLPW-DEQQPLIYLVDQNDHFLFSPLLYELVTGELQS 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP +++LLANT V+F + VK + + V+L S + YD LV
Sbjct: 62 WEIAPPYSELLANTEVRFIQSAVKEIDVAQQ-------------QVIL-SDQSISYDRLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E L VPG+AE+A PF T++DA ++ +L LE + K IRVAVVG G SG
Sbjct: 108 LALGGETPLHQVPGSAEYALPFRTVQDAYCLEDRLRALETSDAPK---IRVAVVGAGPSG 164
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL ++G ++ I I + N+ AA K L R+V
Sbjct: 165 VELACKLADRLGDRGRIRLIERNNQILKSAPEFNQTAAQKALEKRQVW------------ 212
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E S++ ++AA + + Y ++ DLVLWTVG+
Sbjct: 213 -TDLETSIE--------SLAAHEMTLSY---------KDKTDTLPVDLVLWTVGTA---- 250
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
+ PP L LP N GQ TD TL V+ P IFALGD + RD G P P TAQVA Q
Sbjct: 251 -IAPPIQAL-PLPQNDLGQLLTDPTLQVQDSPHIFALGDLADCRDPQGNPNPKTAQVAIQ 308
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QAD GWNLWA++ RPLL F + +LGEM+ LG + AA+S G+ LDGP+ AR+L
Sbjct: 309 QADCVGWNLWASLTQRPLLSFHYTHLGEMLTLGEDSAAMSGL---GLQLDGPLAFMARRL 365
Query: 497 AYLIRLPTDEHRLKVGVSWLTKSAIDSV 524
YL R+PT +H+LK+G +W+ K + ++
Sbjct: 366 IYLYRMPTLDHQLKIGFNWMFKPVLSAL 393
>gi|443325802|ref|ZP_21054480.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
gi|442794571|gb|ELS03980.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
Length = 395
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 182/444 (40%), Positives = 261/444 (58%), Gaps = 55/444 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +ICI+GGGFGGLYTALRL L + ++KP++ L+D+ +RF+F P+LYEL++ E+ +WE
Sbjct: 4 KQKICIVGGGFGGLYTALRLHELPTEVEEKPEITLIDKGDRFLFSPLLYELITEELQSWE 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F ++LANTG+ F + V N + V +++ ++YD LVLS
Sbjct: 64 IAPPFEEVLANTGIVFRQGEV----------TNIDLEAKQ---VTVDNSSTIDYDKLVLS 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
G + L++VPGA A PF +L+DA R+ KL LE + +IRVA+VG GYSGVE
Sbjct: 111 TGGKTPLNIVPGAIANAIPFRSLKDAYRIIEKLRHLEESH---QDIIRVAIVGAGYSGVE 167
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA V++RL ++G V+ I+ T I T NRE AL L R++ +
Sbjct: 168 LACKVADRLGDQGRVRIIDRGTQILDNATDFNREKALTALEERQIWI------------- 214
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
+ E V + E+ E+ KG E DLVLWTVG++ V
Sbjct: 215 DLETEVAKVEAD----------------EIALTFKG-EVDTIPVDLVLWTVGNQ-----V 252
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+L +L + RG + TL V + ++ALGD + +D G LPATAQVAFQQ+
Sbjct: 253 STLTEKL-NLEKSDRGLLKLQNTLQVLNNDDVYALGDIAECQDEHGNILPATAQVAFQQS 311
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ WN+WA IN +PLLPFR+Q LGEMM LG ++AA+S G+ LDG + + AR+L Y
Sbjct: 312 DYCAWNIWAQINHKPLLPFRYQALGEMMALGADNAALSGL---GLQLDGSLAYIARRLIY 368
Query: 499 LIRLPTDEHRLKVGVSWLTKSAID 522
L RLPT +H+L VG++W+T+ ++
Sbjct: 369 LYRLPTLKHQLTVGLNWITQPIVE 392
>gi|376003428|ref|ZP_09781239.1| NADH dehydrogenase [Arthrospira sp. PCC 8005]
gi|375328231|emb|CCE16992.1| NADH dehydrogenase [Arthrospira sp. PCC 8005]
Length = 398
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 180/438 (41%), Positives = 253/438 (57%), Gaps = 55/438 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLTQLPWLPTQTPEITIVDSRDRFVFAPLLYELVTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F LL T ++F + G + T V L+ G ++YD LVL++G
Sbjct: 67 PPFEQLLEETPIRFIQ------------GTVADIDIT-AQQVQLQDGQFLDYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD+VPG+ ++A PF +EDA R+ +L LE + K IRVA++G GYSGVELA
Sbjct: 114 GETPLDIVPGSQQYAIPFRRVEDAYRLQERLRILEASDAEK---IRVAIIGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
++ERL ++G ++ + I + NREAA K LS R+V L +
Sbjct: 171 CKLAERLGKRGRLRLVERGEKILKSAPDFNREAAQKALSERQVWL-------------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E +V+ ++ +I LE + + L D+V+WTVG++ P
Sbjct: 218 ETTVQSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ------TP 254
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
R L N Q + L V HP IFALGD + D+ G+ +P TAQ AFQQAD+
Sbjct: 255 DLVRSLPLKQNTEHQIIINPQLQVIEHPEIFALGDLADCHDAEGKKVPKTAQAAFQQADY 314
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
AGWNLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L YL
Sbjct: 315 AGWNLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRLIYLY 371
Query: 501 RLPTDEHRLKVGVSWLTK 518
RLPT EH+++V +W+++
Sbjct: 372 RLPTLEHQMRVAFNWISR 389
>gi|75907033|ref|YP_321329.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena variabilis ATCC 29413]
gi|75700758|gb|ABA20434.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anabaena variabilis ATCC 29413]
Length = 409
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 194/452 (42%), Positives = 271/452 (59%), Gaps = 63/452 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RI ILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ +
Sbjct: 3 EQTKRIVILGGGFGGLYTALRLSQLPWETQQKPEIVLVDQSDRFLFSPLLYELLTGELQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TG++F++ V G++ H L+ G + YD LV
Sbjct: 63 WEIAPPFIELLEGTGIRFYQAVVS--------GIDIDQQRVH-----LQDGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGA +A+PF T+ D R++ +L LE + K IRVA+VG GYSG
Sbjct: 110 LTLGGETPLDLVPGATSYAYPFRTIADTYRLEERLRVLEESDAEK---IRVAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL E+G + + + I T NREAA K L A+ G F+
Sbjct: 167 VELACKLADRLGERGRFRLVEISDQILRTSPDFNREAAKKALDAK------GVFI----- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPL 374
+ E V+ +I + S +Y ++Q+ DLV+WTVG++
Sbjct: 216 --DLETKVE--------SIGQNTISLEY-----------KNQVDTIPVDLVIWTVGTR-- 252
Query: 375 LPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
N + LP N RGQ TL V HP IFALGD + D+ G+ +PATAQ
Sbjct: 253 ------VTNVVKSLPFKQNQRGQITNTPTLQVLDHPDIFALGDLADCIDAEGQQVPATAQ 306
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 492
AFQQAD+A WN+WA++ RPLLPFR+Q LGEM+ LG ++A ++ GV LDG + +
Sbjct: 307 AAFQQADYAAWNIWASLTQRPLLPFRYQQLGEMLALGTDNATLTGL---GVKLDGSLAYV 363
Query: 493 ARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSV 524
AR+LAYL RLPT +H+LKVG +WL + I+++
Sbjct: 364 ARRLAYLYRLPTLDHQLKVGFNWLVRPIIETI 395
>gi|423066857|ref|ZP_17055647.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis C1]
gi|406711622|gb|EKD06822.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis C1]
Length = 407
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 182/445 (40%), Positives = 257/445 (57%), Gaps = 56/445 (12%)
Query: 75 PDKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE 133
P ++P RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE
Sbjct: 9 PMTEQPTRICILGGGFGGLYTALRLTQLPWLPTQTPEITIVDSRDRFVFAPLLYELVTGE 68
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ AWEIAP F LL T ++F + G + T V L+ G ++YD
Sbjct: 69 LQAWEIAPPFEQLLEETPIRFIQ------------GTVADIDIT-ARQVQLQDGQFLDYD 115
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCG 253
LVL++G E LD+VPG+ ++A PF +EDA R+ +L LE + K IRVA++G G
Sbjct: 116 RLVLAMGGETPLDIVPGSQQYAIPFRRVEDAYRLQERLRILEASDAEK---IRVAIIGGG 172
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
YSGVELA ++ERL ++G ++ + I + NREAA K LS R+V L
Sbjct: 173 YSGVELACKLAERLGKRGRLRLVERGEKILKSAPDFNREAAQKALSERQVWL-------- 224
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
+ E +V+ ++ +I LE + + L D+V+WTVG++
Sbjct: 225 -----DLETTVQSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ- 261
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P R L N Q + L V HP IFALGD + D+ G+ +P TAQ
Sbjct: 262 -----TPDLVRSLPLKQNTEHQIIINPQLQVIEHPEIFALGDLADCHDAEGKKVPKTAQA 316
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
AFQQAD+AGWNLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H A
Sbjct: 317 AFQQADYAGWNLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVA 373
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTK 518
R+L YL RLPT EH+++V +W+++
Sbjct: 374 RRLIYLYRLPTLEHQMRVAFNWISR 398
>gi|209528007|ref|ZP_03276489.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Arthrospira maxima CS-328]
gi|209491564|gb|EDZ91937.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Arthrospira maxima CS-328]
Length = 398
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 180/438 (41%), Positives = 253/438 (57%), Gaps = 55/438 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLTQLPWLPTQTPEITIVDSRDRFVFAPLLYELVTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F LL T ++F + G + T V L+ G ++YD LVL++G
Sbjct: 67 PPFEQLLEETPIRFIQ------------GTVADIDIT-ARQVQLQDGQFLDYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD+VPG+ ++A PF +EDA R+ +L LE + K IRVA++G GYSGVELA
Sbjct: 114 GETPLDIVPGSQQYAIPFRRVEDAYRLQERLRILEASDAEK---IRVAIIGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
++ERL ++G ++ + I + NREAA K LS R+V L +
Sbjct: 171 CKLAERLGKRGRLRLVERGEKILKSAPDFNREAAQKALSERQVWL-------------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E +V+ ++ +I LE + + L D+V+WTVG++ P
Sbjct: 218 ETTVQSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ------TP 254
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
R L N Q + L V HP IFALGD + D+ G+ +P TAQ AFQQAD+
Sbjct: 255 DLVRSLPLKQNTEHQIIINPQLQVIEHPEIFALGDLADCHDAEGKKVPKTAQAAFQQADY 314
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
AGWNLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L YL
Sbjct: 315 AGWNLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRLIYLY 371
Query: 501 RLPTDEHRLKVGVSWLTK 518
RLPT EH+++V +W+++
Sbjct: 372 RLPTLEHQMRVAFNWISR 389
>gi|427727887|ref|YP_007074124.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
gi|427363806|gb|AFY46527.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
Length = 402
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 194/445 (43%), Positives = 267/445 (60%), Gaps = 55/445 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ WEIA
Sbjct: 7 RIVILGGGFGGLYTALRLSQLPWESGQKPEIVLVDQSDRFLFSPLLYELLTGELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P FA+LL TGV+F++ V G++ H L+ G + D LVL+LG
Sbjct: 67 PPFAELLQGTGVRFYQAIVS--------GIDIDQQRVH-----LQDGPELPCDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E LD+V GA +A+PF ++ DA R++ +L LE + K IRVA+VG GYSGVELA
Sbjct: 114 GETPLDLVSGATSYAYPFRSITDAYRLEERLRVLEESDAEK---IRVAIVGAGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL ++G + I + I T NREAA K L AR V L +
Sbjct: 171 CKLADRLGDRGRFRLIEISDQILRTSPEFNREAAKKALEARGVFL-------------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E V+ +I D S +Y ++ D+V+WTVG++
Sbjct: 218 ETKVE--------SIGQDTISLEYKHQID---------TIPVDVVIWTVGTRV------A 254
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
P R L N RGQ T TL V HP IFALGD + D+ G+ +PATAQ AFQQAD+
Sbjct: 255 PVVRSLPLKQNQRGQITTTPTLQVLDHPEIFALGDLADCLDAEGQQIPATAQAAFQQADY 314
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
A WN+WA++ RPLLPFR+Q LGEMM LG+++A ++ G+ LDG + + AR+LAYL
Sbjct: 315 AAWNIWASLTHRPLLPFRYQQLGEMMALGKDNATLTSL---GIKLDGTLAYLARRLAYLY 371
Query: 501 RLPTDEHRLKVGVSWLTKSAIDSVA 525
R+PT +H+LKVG +WL + I++++
Sbjct: 372 RMPTLDHQLKVGFNWLVRPIIETIS 396
>gi|17231586|ref|NP_488134.1| NADH dehydrogenase [Nostoc sp. PCC 7120]
gi|17133229|dbj|BAB75793.1| NADH dehydrogenase [Nostoc sp. PCC 7120]
Length = 409
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 194/452 (42%), Positives = 271/452 (59%), Gaps = 63/452 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RI ILGGGFGGLYTALR+ L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ +
Sbjct: 3 EQTKRIVILGGGFGGLYTALRVSQLPWETQQKPEIVLVDQSDRFLFSPLLYELLTGELQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TG++F++ V G++ H L+ G + YD LV
Sbjct: 63 WEIAPPFIELLEGTGIRFYQAVVS--------GIDIDQQRVH-----LQDGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG E LD+VPGA +A+PF T+ D R++ +L LE + K IRVA+VG GYSG
Sbjct: 110 LTLGGETPLDLVPGAISYAYPFRTIADTYRLEERLRVLEESDAEK---IRVAIVGAGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL E+G + + + I T NREAA K L A+ G F+
Sbjct: 167 VELACKLADRLGERGRFRLVEISDQILRTSPDFNREAAKKALDAK------GVFI----- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPL 374
+ E V+ +I + S +Y ++Q+ DLV+WTVG++
Sbjct: 216 --DLETKVE--------SIGQNTISLEY-----------KNQVDTIPVDLVIWTVGTR-- 252
Query: 375 LPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
N + LP N RGQ TL V HP IFALGD + D+ G+ +PATAQ
Sbjct: 253 ------VTNVVKSLPFKQNQRGQITNTPTLQVLDHPDIFALGDLADCIDAEGQQVPATAQ 306
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 492
AFQQAD+A WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ GV LDG + +
Sbjct: 307 AAFQQADYAAWNIWASLTQRPLLPFRYQQLGEMMALGTDNATLTGL---GVKLDGSLAYV 363
Query: 493 ARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSV 524
AR+LAYL RLPT +H+LKVG +WL + I+++
Sbjct: 364 ARRLAYLYRLPTLDHQLKVGFNWLVRPIIETI 395
>gi|434400100|ref|YP_007134104.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
gi|428271197|gb|AFZ37138.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
Length = 395
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 187/445 (42%), Positives = 269/445 (60%), Gaps = 55/445 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RICILGGGFGGLYTALRL L W+ +++P+++LVD+S+RF+F P+LYEL++ E+ W
Sbjct: 3 EKQRICILGGGFGGLYTALRLSQLPWEKEQQPEIVLVDKSDRFLFAPLLYELVTEELQTW 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP F ++LA+TG+ F++ V + V L+ + Y LV+
Sbjct: 63 EIAPPFEEILADTGIVFYQASVTDI-------------DIEAKRVKLDHSSELTYTKLVI 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
++G + L+ VPGA A PF TL DA R+ +L LE+ N K IRVAVVG GYSGV
Sbjct: 110 AMGGKTPLNTVPGAILHAIPFRTLNDAYRLREELRLLEQSNRDK---IRVAVVGGGYSGV 166
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA +++RL +KG ++ I I + N+EAA K L RK+ L
Sbjct: 167 ELACKIADRLGDKGRIRIIERGDKILKDSSQFNQEAATKALEKRKIWL------------ 214
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
+ E V+Q E+ +I A KG + DLVLWTVG++
Sbjct: 215 -DVETEVEQVEADSI----------------SLAYKG-KVDTIPVDLVLWTVGNQ----- 251
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
V +L LP +++G +T+ L V H IFALGD ++ +D++G+ +PATAQVAFQQ
Sbjct: 252 VSEFMRKL-PLPQDSQGLLKTNANLQVLEHEDIFALGDIASCQDATGQLVPATAQVAFQQ 310
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WNLWA+++DRPLLPFR+Q LGEMM LG ++A++S G+ LDG + + AR+L
Sbjct: 311 SDYCAWNLWASMSDRPLLPFRYQPLGEMMTLGVDNASISGL---GLNLDGSLAYIARRLI 367
Query: 498 YLIRLPTDEHRLKVGVSWLTKSAID 522
YL RLPT +H+L VG +W+T+ ++
Sbjct: 368 YLYRLPTLKHQLTVGFNWITQPLVE 392
>gi|428779514|ref|YP_007171300.1| NADH dehydrogenase, FAD-containing subunit [Dactylococcopsis salina
PCC 8305]
gi|428693793|gb|AFZ49943.1| NADH dehydrogenase, FAD-containing subunit [Dactylococcopsis salina
PCC 8305]
Length = 398
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 178/444 (40%), Positives = 262/444 (59%), Gaps = 59/444 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + RICILGGGFGGLYTALRL L W +P+++LVDQ +RF+F P+LYELL+ E+
Sbjct: 3 ESRSRICILGGGFGGLYTALRLSQLPWDHQPQPEIILVDQRDRFLFTPLLYELLTNELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F ++LA+T +QF + V GV+ + V L ++YDWLV
Sbjct: 63 WEIAPPFTEILADTKIQFRQGTVT--------GVD-----VNRQQVQLADQSQLDYDWLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G + ++ V GAA FAFPF +L+DA +D +L LE + K IR+A+VG GYSG
Sbjct: 110 LAMGGKTPIEAVSGAATFAFPFHSLKDAYHLDERLRSLENSDQEK---IRIAIVGGGYSG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VE+A + +R+ ++ ++ I I T NRE A K LS R++ L
Sbjct: 167 VEIACKLRDRVGDRARIRIIERGEMILKTSPEFNRETAQKALSDREIWL----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS--KPL 374
+ E SV+ I A + Y KG +S D+V+WTVG+ L
Sbjct: 216 --DTETSVEA--------ITAQDITLWY--------KG-KSDTIPVDVVIWTVGTTVSEL 256
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
+ ++ +LP N +G+ + + TL V + +FALGD + D +G+ +P TAQVA
Sbjct: 257 VKNL--------NLPHNEQGKIKIEPTLQVVDNSSVFALGDLAFCEDGNGKVVPTTAQVA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQQ+D+ WN+WA I RPLLPF++ NLGEM++LG ++ +++ +GV LDG + + AR
Sbjct: 309 FQQSDYCAWNIWATITGRPLLPFKYYNLGEMLVLGTDNGSLT---AQGVKLDGMLAYLAR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTK 518
+ AYL R+PT EH+L VG +W+T+
Sbjct: 366 RFAYLSRMPTPEHQLTVGSNWITQ 389
>gi|427709789|ref|YP_007052166.1| NADH dehydrogenase [Nostoc sp. PCC 7107]
gi|427362294|gb|AFY45016.1| NADH dehydrogenase [Nostoc sp. PCC 7107]
Length = 400
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 270/440 (61%), Gaps = 63/440 (14%)
Query: 90 GGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
GGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ WEIAP FA+LL
Sbjct: 17 GGLYTALRLSQLPWESQQKPEIVLVDQSDRFLFSPLLYELLTGELQTWEIAPPFAELLQG 76
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
TGV+F++ V G++ T V L+ G + YD LVL+LG E LD+VP
Sbjct: 77 TGVRFYQALVS--------GID-----TDQQRVQLQDGPEIAYDRLVLALGGETPLDMVP 123
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
GA +A PF T+ DA R++++L L+ + K +R+A+VG GYSGVELA +++RL E
Sbjct: 124 GATSYALPFRTINDAYRLEQRLQILQESDADK---MRIAIVGAGYSGVELACKLADRLGE 180
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
KG ++ I + I T NRE A K L AR G F+ + E V+
Sbjct: 181 KGRLRLIEISDQILRTSPEFNRETAKKALDAR------GVFI-------DLETKVE---- 223
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPHVEPPNNRLHD 387
+I AD S +Y ++QI DLVLWTVG++ ++P V +
Sbjct: 224 ----SIGADTISLEY-----------KNQIDTIPVDLVLWTVGTQ-VVPVV-------RN 260
Query: 388 LPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 445
LP N R Q T TL V HP IFALGD + RD+ + +PATAQ AFQQAD+ WN+
Sbjct: 261 LPFKQNQRHQITTTSTLQVLDHPEIFALGDLADCRDAEDQQIPATAQAAFQQADYTAWNI 320
Query: 446 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 505
WA+++DRPLLPFR+Q LGEMM LG ++A ++ GV LDG +G+ AR+LAYL R+PT
Sbjct: 321 WASLSDRPLLPFRYQKLGEMMALGVDNATLTGL---GVKLDGSLGYVARRLAYLYRMPTL 377
Query: 506 EHRLKVGVSWLTKSAIDSVA 525
EH+LKVG +WL + I++++
Sbjct: 378 EHQLKVGFNWLVRPIIETIS 397
>gi|67920273|ref|ZP_00513793.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
gi|67857757|gb|EAM52996.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
Length = 396
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 181/444 (40%), Positives = 255/444 (57%), Gaps = 59/444 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W++D+ P+++L+D+S+RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFTWEEDQTPEIILIDKSDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA+T ++F + V G+N + L++ + YD LVL++G
Sbjct: 67 PPYEELLADTPIRFHQGCVT--------GIN-----IENKQLELDNHNSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ LD G ++A PF TLEDA R+ +L LE + K IR+AVVG GYSGVELA
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLEDAYRIKERLRLLEDKKAEK---IRIAVVGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
++RL + G ++ + I NRE A L +R+V F+ +
Sbjct: 171 CKFADRLGDTGRIRLVERGDKILSNSPEFNREVAENALESRRV------FI-------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E V Q ++ D S Y KG I DLVLWTVG++ +
Sbjct: 218 ETEVTQ--------VSFDSVSLSY--------KGKIDSI-PVDLVLWTVGTQVI------ 254
Query: 381 PNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ +LPL + G + L HP IFA+GD +A D S P+PATAQ AFQQ+
Sbjct: 255 --EMVKELPLEKTSNGLLKITPELQAIEHPEIFAIGDLAAYYDESKEPIPATAQTAFQQS 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ WNLWA+I +RPLLPF +Q LGEMM LG ++A +S GV LDG +G+ AR+L Y
Sbjct: 313 DYCAWNLWASITERPLLPFAYQPLGEMMALGIDNATLSGL---GVNLDGSLGYIARRLVY 369
Query: 499 LIRLPTDEHRLKVGVSWLTKSAID 522
L RLPT +H++ VG++W+TK D
Sbjct: 370 LYRLPTLKHQINVGINWMTKPLTD 393
>gi|416375762|ref|ZP_11683393.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
gi|357266476|gb|EHJ15097.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
Length = 396
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 181/444 (40%), Positives = 255/444 (57%), Gaps = 59/444 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W++D+ P+++L+D+S+RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFTWEEDQTPEIILIDKSDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA+T ++F + V G+N + L++ + YD LVL++G
Sbjct: 67 PPYEELLADTPIRFHQGCVT--------GIN-----IENKQLELDNHNSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ LD G ++A PF TLEDA R+ +L LE + K IR+AVVG GYSGVELA
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLEDAYRIKERLRLLEDKKAEK---IRIAVVGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
++RL + G ++ + I NRE A L +R+V F+ +
Sbjct: 171 CKFADRLGDTGRIRLVERGDKILSNSPEFNREVAENALESRRV------FI-------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E V Q ++ D S Y KG I DLVLWTVG++ +
Sbjct: 218 ETEVTQ--------VSFDSVSLSY--------KGKIDSI-PVDLVLWTVGTQVI------ 254
Query: 381 PNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ +LPL + G + L HP IFA+GD +A D S P+PATAQ AFQQ+
Sbjct: 255 --EMVKELPLEKTSNGLLKITPELQAIEHPEIFAIGDLAACYDESKEPIPATAQTAFQQS 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ WNLWA+I +RPLLPF +Q LGEMM LG ++A +S GV LDG +G+ AR+L Y
Sbjct: 313 DYCAWNLWASITERPLLPFAYQPLGEMMALGIDNATLSGL---GVNLDGSLGYIARRLIY 369
Query: 499 LIRLPTDEHRLKVGVSWLTKSAID 522
L RLPT +H++ VG++W+TK D
Sbjct: 370 LYRLPTLKHQINVGINWMTKPLTD 393
>gi|390439986|ref|ZP_10228347.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis sp. T1-4]
gi|389836633|emb|CCI32471.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis sp. T1-4]
Length = 397
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/441 (39%), Positives = 255/441 (57%), Gaps = 59/441 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L WQD PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWQDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQKDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + LD +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVEL
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E+G ++ I + I T NR+ A K L R V L +
Sbjct: 170 ACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 217 LETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIAS 254
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P + +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ
Sbjct: 255 P---LIANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADGRDQEDKPYAATAQVALQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 312 SDYCAWNIWASFHDKPALPFRYQPLGEMLTLGVDEATISGL---GLELAGPLAHLTRRLV 368
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 369 YLYRLPTLNHQIAVAFNWITQ 389
>gi|428201132|ref|YP_007079721.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
gi|427978564|gb|AFY76164.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
Length = 412
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 182/452 (40%), Positives = 263/452 (58%), Gaps = 59/452 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K+ RICILGGGFGGLYTALRL W + +P++ L+D+S+RF+F P+LYEL++GE+
Sbjct: 17 NKQTIRICILGGGFGGLYTALRLTQFPWDNSYQPEITLIDKSDRFLFSPLLYELMTGEMQ 76
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+WEIAP F +LL+ T + F K C + G++ + L++ + YD L
Sbjct: 77 SWEIAPPFEELLSGTDILF-----KQACVT---GID-----IEAREIQLDNETSISYDKL 123
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
V+++G + LD++PGA + A PF TL DA R+ +L LE+ + K IRVA+VG GYS
Sbjct: 124 VVAIGGKTPLDIIPGAKDHAIPFRTLNDAYRLGERLRILEQSDADK---IRVAIVGGGYS 180
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA +++RL E+G ++ I + TI T NREAA K L R V L L V+
Sbjct: 181 GVELACKLADRLGERGRLRLIEKQATILATSPQFNREAAKKALEKRLVWLDLDTEVQ--- 237
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+I +D S Y KG + D+VLWTVG++
Sbjct: 238 ------------------SITSDTISLLY--------KG-QIDTIPVDIVLWTVGTQ--- 267
Query: 376 PHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
+ + LPL + RG T+ L P I+ALGD + +D +G+ +PATAQ
Sbjct: 268 -----VSESIQKLPLKHDQRGLLTTNAFLQASDRPEIYALGDVANCQDITGQQVPATAQS 322
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A QQ+DF WN+WA+I RPLLPFR+ ++GEMM LG ++A +S GV L+G +
Sbjct: 323 ALQQSDFCAWNIWASITRRPLLPFRYFSMGEMMTLGIDNATISGL---GVKLEGIPAYIL 379
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
R+L YL RLPT +H+L VG++W+T+ I+ +A
Sbjct: 380 RRLIYLYRLPTLKHQLNVGLNWITQPVIELLA 411
>gi|86609207|ref|YP_477969.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557749|gb|ABD02706.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 405
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 200/444 (45%), Positives = 270/444 (60%), Gaps = 56/444 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L W + PQ+ LVD+ ERFVF P+LYELL+GE++ WE+A
Sbjct: 3 RICILGGGFGGLYTALELSRQPWPE--PPQITLVDRQERFVFAPLLYELLTGEMEDWEVA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF DLL VQF + V+ + P V LE G +EYD LVL+LG
Sbjct: 61 PRFQDLLPPGSVQFRRGSVQAIDPQAR-------------RVELEDGQSLEYDALVLALG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E L+ VPGAAEFAFPF TL DA R+ L LE R+ + + +A+ G G SGVELA
Sbjct: 108 GETPLESVPGAAEFAFPFRTLADAQRLRAHLKALEDRDPAQP--VALAIAGAGASGVELA 165
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL +G ++ I + + I +REAA + L+ R+VQ+ L V I +G
Sbjct: 166 CKLADRLGWRGRIRLIELGSQILSGFALSSREAAQEALAQRRVQVELQTKVLGIEALG-- 223
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL---VLWTVGSKP--LL 375
E+GA P + L+LQ LE+Q DL VLWTVG++P ++
Sbjct: 224 -------ENGAPP----------FHLQLQ----RLETQEIATDLVDAVLWTVGTRPAAVI 262
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
++ DLP RG+ + TL P IFALGD++A+ D+ G+P+PATAQ AF
Sbjct: 263 ANL--------DLPKTERGRLQVLSTLQTPTFPEIFALGDAAAVVDAEGKPVPATAQAAF 314
Query: 436 QQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
QQA + WNLWA + +RPLLPFR+ +LGEM+ LG + A +S + G+TL GP+G+ AR
Sbjct: 315 QQAGYCAWNLWALLTQERPLLPFRYFSLGEMLSLGVDTAVLSA--LGGLTLTGPLGYLAR 372
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTK 518
+ AYL+RLPT EH+LKVG +W+T+
Sbjct: 373 RTAYLVRLPTLEHQLKVGWNWITR 396
>gi|425463872|ref|ZP_18843202.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9809]
gi|389828794|emb|CCI29977.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9809]
Length = 397
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 253/441 (57%), Gaps = 59/441 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+++RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHPPQITLIDKNDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + LD +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVEL
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
+++RL E+G ++ I + I NRE A K L R V L +
Sbjct: 170 VCKLADRLGERGRIRLIERNSDIIALSPQFNRETAKKALEKRLVWL-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 217 LETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIAS 254
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P L +LPL N R + ++ L +P+I+A+GD++ RD +P ATAQVA QQ
Sbjct: 255 P---LLANLPLAHNERKLLKVNQYLQTVENPKIYAIGDAADSRDQDDKPYAATAQVALQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 312 SDYCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLV 368
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 369 YLYRLPTLNHQIAVAFNWITQ 389
>gi|22298679|ref|NP_681926.1| type 2 NADH dehydrogenase [Thermosynechococcus elongatus BP-1]
gi|22294859|dbj|BAC08688.1| type 2 NADH dehydrogenase [Thermosynechococcus elongatus BP-1]
Length = 401
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 186/454 (40%), Positives = 254/454 (55%), Gaps = 63/454 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ +ICILGGGFGGLYTALRL W P++ LVD S+RFVF P+LYEL++GE++AWE
Sbjct: 8 RSQICILGGGFGGLYTALRLAQFPWS--SPPEITLVDHSDRFVFTPLLYELITGELEAWE 65
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSD---HLGVNGPMACTHGGTVLLESGLIVEYDWL 195
IAP F +LL +T V F + V + + HLG P Y+ L
Sbjct: 66 IAPPFVELLRDTPVVFHQGAVTTIDLQEKTVHLGKGDPFT----------------YEKL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL+LG E +PG A A F TL DA R++ L E + + IRV VVG G S
Sbjct: 110 VLALGGETPKSTIPGVAADALTFRTLSDAYRLEEALQRCEHSDRDR---IRVVVVGAGPS 166
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA ++ERL +G ++ ++ I + NR+AAL+ L R V + L +
Sbjct: 167 GVELACKLAERLGSRGRIRLVDRNPEILKSSPEFNRKAALRALEDRGVWIDLETTPVALT 226
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
R D+ L+ + + L D+VLWTVG+
Sbjct: 227 R-------------------------DRISLQYKDRVDELP-----VDIVLWTVGTA--- 253
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
V P L DLP A G+ + TL V HP IFALGD++ D G+P+P TAQ AF
Sbjct: 254 --VSPVIAAL-DLPKTASGRLQVTPTLQVVDHPDIFALGDAADAVDEQGQPIPHTAQAAF 310
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
QQAD+ WNLWA+++DRPLLP R+ +LGEM+ LGR+ AA++ G+TLDGP+ + AR+
Sbjct: 311 QQADYVAWNLWASLSDRPLLPCRYSHLGEMLTLGRDRAALAGL---GLTLDGPLAYLARR 367
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQS 529
LAYL R+PT EH+LKVG++W+ K +D + + S
Sbjct: 368 LAYLYRMPTLEHQLKVGLNWIAKPFLDLLTTIAS 401
>gi|425468488|ref|ZP_18847504.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9701]
gi|389884862|emb|CCI34887.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9701]
Length = 397
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 254/441 (57%), Gaps = 59/441 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+++RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHTPQITLIDKNDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + LD +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVEL
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E+G ++ I + I T NR+ A K L R V L +
Sbjct: 170 ACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 217 LETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIAS 254
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P L +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ
Sbjct: 255 P---LLANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 312 SDYCAWNIWASFHDKPALPFRYQPLGEMLSLGVDEATISGL---GLELAGPLAHLTRRLV 368
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 369 YLYRLPTLNHQIAVAFNWITQ 389
>gi|422303870|ref|ZP_16391221.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9806]
gi|389791102|emb|CCI13067.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9806]
Length = 397
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 254/441 (57%), Gaps = 59/441 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + LD +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVEL
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E+G ++ I + I T NR+ A K L R V L +
Sbjct: 170 ACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 217 LETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIAS 254
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P + +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ
Sbjct: 255 P---LIANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADGRDQEDKPYAATAQVALQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 312 SDYCAWNIWASFHDKPALPFRYQPLGEMLTLGVDEATISGL---GLELAGPLAHLTRRLV 368
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 369 YLYRLPTLNHQIAVAFNWITQ 389
>gi|425461171|ref|ZP_18840651.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9808]
gi|389825974|emb|CCI23812.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9808]
Length = 397
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 175/442 (39%), Positives = 254/442 (57%), Gaps = 59/442 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D +PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWPDQHRPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F + V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQKDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG + LD +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVE
Sbjct: 112 LGGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA +++RL E+G ++ I + I T NR+ A K L R V L
Sbjct: 169 LACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL------------- 215
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
+ E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 216 DLETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIA 253
Query: 379 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P L +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA Q
Sbjct: 254 SP---LLANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADGRDQEDKPYAATAQVALQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 311 QSDYCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLQLAGPLAHLTRRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 368 VYLYRLPTLNHQIAVAFNWITQ 389
>gi|425448279|ref|ZP_18828257.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9443]
gi|389730972|emb|CCI04917.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9443]
Length = 397
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 174/441 (39%), Positives = 253/441 (57%), Gaps = 59/441 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVNFQQGTVTAINVNNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + L+ +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVEL
Sbjct: 113 GGQSSLEFLPGAKTHAIPFRSLEDAYRLQDRLKTLEQSDRDK---IRVAIIGGGYSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E+G ++ I I T NR+ A K L R V L +
Sbjct: 170 ACKLADRLGERGRIRLIERNPDILGPSTQFNRDTAKKALEKRLVWL-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 217 LETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIAS 254
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P + +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ
Sbjct: 255 P---LIANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 312 SDYCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLV 368
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 369 YLYRLPTLNHQIAVAFNWITQ 389
>gi|443321614|ref|ZP_21050660.1| NADH dehydrogenase, FAD-containing subunit [Gloeocapsa sp. PCC
73106]
gi|442788659|gb|ELR98346.1| NADH dehydrogenase, FAD-containing subunit [Gloeocapsa sp. PCC
73106]
Length = 397
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 178/446 (39%), Positives = 252/446 (56%), Gaps = 59/446 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ +CILGGGFGGLYTALRL L W++ KP++ LVD+S+RF+F P+LYELL+GE+ AWE
Sbjct: 5 RKHVCILGGGFGGLYTALRLNELPWENSGKPKITLVDKSDRFLFSPLLYELLTGEMQAWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP +++LLA+T VQF + VK + + V LE G ++YD LV+
Sbjct: 65 IAPSYSELLADTQVQFKQGSVKNIDLTQK-------------RVKLEDGTELDYDRLVMG 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
G LD VPGA E+A PF TL DA + KL +LE + IR+ + G GYSGVE
Sbjct: 112 TGGNTPLDFVPGAQEYALPFRTLGDAMVLADKLKQLENSD---AKYIRIVIAGGGYSGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA +++RL +G ++ I I T NR+ A K L A++V L L ++ I
Sbjct: 169 LACKLADRLGNRGRIRIIERADQILRTSPEFNRDTAKKALEAKQVWLDLETEIQSIE--- 225
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
AS+ G I I +LVLWTVG++
Sbjct: 226 --AASITIAYKGKIDTIP-------------------------VNLVLWTVGTR------ 252
Query: 379 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
+ + LPL N G T+ L V+G P I+ALGD + +D++G+ +P TAQ A Q
Sbjct: 253 --VSEFIAQLPLKHNNSGFLVTNSLLQVEGDPHIYALGDLADCQDATGQQVPKTAQAAIQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q+D+ WN+WA++ RP L FR+Q LGEMM LG N+A ++ G+ L+G + AR+L
Sbjct: 311 QSDYCAWNIWASLTGRPPLAFRYQPLGEMMTLGINEATLTGL---GLKLEGTTAYLARRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTKSAID 522
YL RLPT +H+L VG++WL + ++
Sbjct: 368 IYLYRLPTRKHQLTVGLNWLAQPLLE 393
>gi|126658527|ref|ZP_01729675.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. CCY0110]
gi|126620269|gb|EAZ90990.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. CCY0110]
Length = 396
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 175/440 (39%), Positives = 252/440 (57%), Gaps = 59/440 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W+ D+ P+++L+D+S+RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFPWEGDQTPEIILIDKSDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA T ++F + V + + + L++ + YD LVL++G
Sbjct: 67 PPYEELLAGTAIRFHQGCVTNIDIENQ-------------QLQLDNHHSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ LD G ++A PF TLEDA R+ +L LE + K IR+A+VG GYSGVEL
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLEDAYRIKERLRLLEEKEAEK---IRIAIVGGGYSGVELG 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL +KG ++ + I + N+E A L +R+V F+ +
Sbjct: 171 CKLADRLGDKGRIRLVERGEKILSSSPEFNQEVAQTALESRRV------FI-------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E V Q S +I A KG + DLVLWTVG++ +
Sbjct: 218 ETEVTQVTSDSI----------------SLAYKG-KIDTIPVDLVLWTVGTQVI------ 254
Query: 381 PNNRLHDLPLNARGQA--ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ + +LPL + + + L V HP IFA+GD +A D S +PATAQ AFQQ+
Sbjct: 255 --DMVKELPLEKTSKELLKINSHLQVIDHPEIFAVGDLAACYDESKNLIPATAQTAFQQS 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ WNLWA+I RPLLPF +Q LGEMM LG ++A +S GV LDGP G+ AR+L Y
Sbjct: 313 DYCAWNLWASITHRPLLPFAYQPLGEMMALGVDNATLSGL---GVNLDGPFGYMARRLIY 369
Query: 499 LIRLPTDEHRLKVGVSWLTK 518
L RLPT +H++ VG++W+TK
Sbjct: 370 LYRLPTLKHQINVGINWITK 389
>gi|425454624|ref|ZP_18834354.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9807]
gi|389804676|emb|CCI16149.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9807]
Length = 397
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 174/441 (39%), Positives = 254/441 (57%), Gaps = 59/441 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L WQD PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWQDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVNFQQGTVTAININNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + L+ +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVEL
Sbjct: 113 GGQSSLEFLPGAKTHAIPFRSLEDAYRLQDRLKTLEQSDRDK---IRVAIIGGGYSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E+G ++ I I T NR+ A K L R V L +
Sbjct: 170 ACKLADRLGERGRIRLIERNPDILGPSTQFNRDTAKKALEKRLVWL-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E +V AD +D+ L+ + I + DL+LWTV P+ +
Sbjct: 217 LETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS--PIASAL- 256
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
+ +LPL N R + ++ L + I+A+GD++ RD +P ATAQVA QQ
Sbjct: 257 -----IANLPLAHNERKLLKVNQYLQTVENSSIYAIGDAADSRDQEDKPYAATAQVALQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 312 SDYCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLV 368
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 369 YLYRLPTLNHQIAVAFNWITQ 389
>gi|218245551|ref|YP_002370922.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8801]
gi|218166029|gb|ACK64766.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8801]
Length = 398
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 255/445 (57%), Gaps = 57/445 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL WQ+ + P+++L+DQ +RF+F P+LYEL++ E+ +WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQFPWQNGQYPEIILIDQRDRFLFTPLLYELITDEMQSWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P F +LL NT ++F + V + ++HL ++ + ++YD+LVL++
Sbjct: 67 PPFEELLINTRIRFHQGCVTAINVETNHLEIDHRHS--------------LQYDYLVLAI 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + LD V GA ++A PF +L+DA R+ +L LE K IRVAVVG G SGVEL
Sbjct: 113 GGKTPLDQVVGAKDYAIPFRSLDDAYRIKERLRLLETSQVEK---IRVAVVGGGSSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E G ++ + + NR+ A + L R+V + +
Sbjct: 170 ACKLADRLGETGRIRLVERGEEVLSHSPEFNRKVAQEALEKRRVWI-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E V + S + L KG + DL+LWTVG++ E
Sbjct: 217 LETEVTEVRSDS----------------LSLCYKG-QVDTIPVDLILWTVGTQV----SE 255
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439
N DL N++G + + L H I+A+GD + D +G+ +PATAQ AFQQ+D
Sbjct: 256 LVKNT--DLKHNSQGLLKVNPELQAINHTNIYAIGDLADCEDITGQKIPATAQAAFQQSD 313
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 499
+ WN+WA+I RPLLPFR+Q LGEMM LG ++AA++ G+ LDG + + AR+L YL
Sbjct: 314 YCAWNIWASITHRPLLPFRYQPLGEMMALGSDNAALNGL---GIQLDGGLAYIARRLIYL 370
Query: 500 IRLPTDEHRLKVGVSWLTKSAIDSV 524
RLPT +H+L VG+SW+T +D +
Sbjct: 371 YRLPTLKHQLNVGLSWITSPILDWI 395
>gi|425451052|ref|ZP_18830874.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 7941]
gi|389767793|emb|CCI06880.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 7941]
Length = 397
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 252/442 (57%), Gaps = 59/442 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWSDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVNFQPGTVTAINVNNH-------------KITLDNKNDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG + LD +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVE
Sbjct: 112 LGGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA +++RL E+G ++ I + I T NR+ A K L R V L
Sbjct: 169 LACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL------------- 215
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
+ E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 216 DLETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIA 253
Query: 379 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P + +LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA Q
Sbjct: 254 SP---LIANLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 311 QSDYCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 368 VYLYRLPTLNHQIAVAFNWITQ 389
>gi|257058595|ref|YP_003136483.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8802]
gi|256588761|gb|ACU99647.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8802]
Length = 398
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 254/445 (57%), Gaps = 57/445 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL WQ+ + P+++L+DQ +RF+F P+LYEL++ E+ +WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQFPWQNGQYPEIILIDQRDRFLFTPLLYELITDEMQSWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P F +LL NT ++F + V + ++HL ++ + ++YD+LVL++
Sbjct: 67 PPFEELLINTRIRFHQGCVTAINVETNHLEIDHRHS--------------LQYDYLVLAI 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + LD V GA ++A PF +L+DA R+ +L LE K IRVAVVG G SGVEL
Sbjct: 113 GGKTPLDQVVGAKDYAIPFRSLDDAYRIKERLRLLETSQVEK---IRVAVVGGGSSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E G ++ + + NR+ A + L R+V + +
Sbjct: 170 ACKLADRLGETGRIRLVERGEEVLSHSPEFNRKVAQEALEKRRVWI-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E V + S + L KG + DL+LWTVG++ E
Sbjct: 217 LETEVTEVRSDS----------------LSLCYKG-QVDTIPVDLILWTVGTQV----SE 255
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439
N DL N +G + + L H I+A+GD + D +G+ +PATAQ AFQQ+D
Sbjct: 256 LVKNT--DLKHNTQGLLKVNPELQAINHTNIYAIGDLADCEDITGQKIPATAQAAFQQSD 313
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 499
+ WN+WA+I RPLLPFR+Q LGEMM LG ++AA++ G+ LDG + + AR+L YL
Sbjct: 314 YCAWNIWASITHRPLLPFRYQPLGEMMALGSDNAALNGL---GIQLDGGLAYIARRLIYL 370
Query: 500 IRLPTDEHRLKVGVSWLTKSAIDSV 524
RLPT +H+L VG+SW+T +D +
Sbjct: 371 YRLPTLKHQLNVGLSWITSPILDWI 395
>gi|440756971|ref|ZP_20936171.1| putative NADH dehydrogenase [Microcystis aeruginosa TAIHU98]
gi|440173000|gb|ELP52484.1| putative NADH dehydrogenase [Microcystis aeruginosa TAIHU98]
Length = 397
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 172/441 (39%), Positives = 253/441 (57%), Gaps = 59/441 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWSDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G + L+ +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVEL
Sbjct: 113 GGQSSLEFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL E+G ++ I + I T NR+ A K L R V L +
Sbjct: 170 ACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------D 216
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 217 LETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIAS 254
Query: 380 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P + +LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA QQ
Sbjct: 255 P---LIANLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQ 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 312 SDYCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLV 368
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 369 YLYRLPTLNHQIAVAFNWITQ 389
>gi|172035071|ref|YP_001801572.1| type 2 NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|354551921|ref|ZP_08971229.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
gi|171696525|gb|ACB49506.1| type 2 NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|353555243|gb|EHC24631.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
Length = 396
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 176/444 (39%), Positives = 253/444 (56%), Gaps = 59/444 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W++D+ P+++L+D+++RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFPWEEDQTPEIILIDKNDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA T V+F + C +D N + L++ + YD LVL++G
Sbjct: 67 PPYEELLAGTTVRFHQG-----CVTDIDIDNQQLQ--------LDNHHSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ LD G ++A PF TLE+A R+ +L LE + K IR+A+VG GYSGVELA
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLENAYRIKERLRLLEEKEAEK---IRIAIVGGGYSGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL + G ++ + I NR+ A L AR++ FV +
Sbjct: 171 CKLADRLGDTGRIRLVERGEKILKDSPEFNRDVAQTALEARRI------FV-------DL 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E V Q S +I A KG + DLVLWTVG++
Sbjct: 218 ETEVTQVSSDSI----------------SLAYKG-KIDTIPVDLVLWTVGTQ-------- 252
Query: 381 PNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ +LPL +G + + L V +P IFA+GD A D S +PATAQ AFQQ+
Sbjct: 253 VTEMIKELPLQKTPKGLLKINSQLQVIDNPEIFAIGDLVACYDESQNLIPATAQTAFQQS 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ WNLWA+I+ RPLL F +Q LGEMM LG ++A +S G+ LDGP+G+ AR+L Y
Sbjct: 313 DYCAWNLWASISHRPLLSFAYQPLGEMMALGIDNATLSGL---GINLDGPLGYMARRLIY 369
Query: 499 LIRLPTDEHRLKVGVSWLTKSAID 522
L RLPT +H++ VG++W+TK D
Sbjct: 370 LYRLPTLKHQINVGINWITKPLTD 393
>gi|425433764|ref|ZP_18814242.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9432]
gi|389675515|emb|CCH95345.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9432]
Length = 397
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 176/442 (39%), Positives = 253/442 (57%), Gaps = 59/442 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWSDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F + V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVNFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG + L+ +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVE
Sbjct: 112 LGGQSSLEFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA +++RL E+G ++ I + I T NR+ A K L R V L
Sbjct: 169 LACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL------------- 215
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
+ E +V +I AD+ S Y KG +I DL+LWTV P
Sbjct: 216 DLETTVA--------DIQADRLSLDY--------KGQIDKI-PVDLILWTVS-----PIA 253
Query: 379 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P L +LP+ N R + ++ L + I+A+GD++ RD +P ATAQVA Q
Sbjct: 254 SP---LLANLPIAHNERKLLKVNQYLQTVENSSIYAIGDAADSRDQEDKPYAATAQVALQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 311 QSDYCAWNIWASFHDKPALPFRYQPLGEMLTLGVDEATISGL---GLELAGPLAHLTRRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 368 VYLYRLPTLNHQIAVAFNWITQ 389
>gi|428218241|ref|YP_007102706.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena sp. PCC 7367]
gi|427990023|gb|AFY70278.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena sp. PCC 7367]
Length = 402
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 173/448 (38%), Positives = 262/448 (58%), Gaps = 60/448 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICI+GGGFGGLYTAL L L W ++KP ++L+D+S+RF+F P+LYEL++ E++ WEIA
Sbjct: 3 QICIVGGGFGGLYTALHLTRLPW--NQKPSIVLIDKSDRFLFTPLLYELITAELEPWEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P F +LL NTGV+F + + + ++G +A + YD L+L+L
Sbjct: 61 PSFVELLKNTGVRFIHATATAIDTENRRISLSGEVAPAE-----------ISYDRLLLAL 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G E +++VPGA E+A PF TL+DA R++ +L++LE + K IRV + G G SGVEL
Sbjct: 110 GGETPINIVPGATEYALPFRTLKDAQRLNERLTQLEASSKDK---IRVCIAGGGSSGVEL 166
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +S+RL ++G V+ ++ +TI T NR AA K L AR V + +
Sbjct: 167 ACKISDRLGDRGRVRLVDRNSTILTDSTTANRAAAEKALLARNVWI-------------D 213
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
SV Q G + +L+ G + I D+V+WTVG++
Sbjct: 214 LSTSVVQINDGEV------------VLDY-----GGGNDILPVDIVMWTVGNRM------ 250
Query: 380 PPNNRLHDLPLNAR---GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
+ + LPL G+ T+ TL V+ HP +FA+GD + RD+ G+ LPA AQVA+Q
Sbjct: 251 --SKLVESLPLPHSPRGGRVITEPTLQVQYHPELFAIGDLALCRDADGQLLPANAQVAYQ 308
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q+ + N+WA++N R L PF++ LGE + LG DAA+ S T++G AR+L
Sbjct: 309 QSQYCATNIWASLNQRHLTPFKYLELGEFLSLGIEDAAM--SVFNQFTVEGVPAIMARRL 366
Query: 497 AYLIRLPTDEHRLKVGVSWLTKSAIDSV 524
YL+R+PT EH++KVG++WLTK ++++
Sbjct: 367 IYLMRMPTLEHQMKVGLNWLTKPMVNAI 394
>gi|443655689|ref|ZP_21131544.1| putative NADH dehydrogenase [Microcystis aeruginosa DIANCHI905]
gi|159029241|emb|CAO87601.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443333607|gb|ELS48161.1| putative NADH dehydrogenase [Microcystis aeruginosa DIANCHI905]
Length = 397
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 172/442 (38%), Positives = 253/442 (57%), Gaps = 59/442 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWPDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F + V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG + L+ +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVE
Sbjct: 112 LGGQSSLEFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA +++RL E+G ++ I + I T NR+ A K L R V L
Sbjct: 169 LACKLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL------------- 215
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
+ E +V AD +D+ L+ + I + DL+LWTV P
Sbjct: 216 DLETTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIA 253
Query: 379 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
P + +LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA Q
Sbjct: 254 SP---LIANLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q+D+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L
Sbjct: 311 QSDYCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
YL RLPT H++ V +W+T+
Sbjct: 368 VYLYRLPTLNHQIAVAFNWITQ 389
>gi|15912293|gb|AAL08280.1| NADH dehydrogenase-like protein [Arabidopsis thaliana]
gi|22135783|gb|AAM91048.1| At5g08740/At5g08740 [Arabidopsis thaliana]
Length = 257
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/241 (64%), Positives = 181/241 (75%), Gaps = 24/241 (9%)
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
LVL+LGAE KLDVVPGA E AFPF TLEDA RV+ KLS+LER+NF S I+VAVVGCGY
Sbjct: 26 LVLALGAESKLDVVPGAMELAFPFYTLEDAIRVNEKLSKLERKNFKDGSAIKVAVVGCGY 85
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELAAT+SERL+++GIVQ+INV I + GNREAA+KVL++RKVQL+LGY V+ I
Sbjct: 86 AGVELAATISERLQDRGIVQSINVSKNILTSAPDGNREAAMKVLTSRKVQLLLGYLVQSI 145
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
+R E + Y LELQPA +GLESQI EAD+VLWTVG+KPL
Sbjct: 146 KRASNLE------------------EDEGYFLELQPAERGLESQIIEADIVLWTVGAKPL 187
Query: 375 LPHVEP--PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
L +EP PN LPLNARGQAETDETL VKGHPRIFALGDSS+LRDS+G+ LP TAQ
Sbjct: 188 LTKLEPSGPNV----LPLNARGQAETDETLRVKGHPRIFALGDSSSLRDSNGKILPTTAQ 243
Query: 433 V 433
V
Sbjct: 244 V 244
>gi|427418370|ref|ZP_18908553.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
gi|425761083|gb|EKV01936.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
Length = 398
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 174/440 (39%), Positives = 249/440 (56%), Gaps = 59/440 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ ILGGGFGGLYTAL L L W KP++ LVDQ +RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RVVILGGGFGGLYTALALSKLPWDKAIKPEITLVDQRDRFLFAPLLYELVTDELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +A+LLA TG++F + GV+G A + +V L+ ++ YD+LVL+LG
Sbjct: 67 PPYAELLAGTGIKFHQS-----------GVSGIDAVAN--SVCLQDDAVLPYDYLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E +D+ PG E+A F TL DA + +L ELE + + IRVAVVG GYSGVEL
Sbjct: 114 GETPMDMAPGVKEYAIAFRTLSDAYALKERLRELEASDADQ---IRVAVVGGGYSGVELV 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
++ERL E+G ++ + T I N++AA L+ + + + ++
Sbjct: 171 CKLAERLGERGRLRIVERGTAILQNSPEFNQKAAQDALTDKGIWI-------------DY 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E +V + I D S KY ++ + DLVLWTVG++
Sbjct: 218 ETTVTE--------IGVDTISLKYKDQV---------DVLPVDLVLWTVGNQ-------- 252
Query: 381 PNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
N + LP N Q + TL + IFALGD + +D+ G +P TAQ A QQA
Sbjct: 253 VNPLIASLPFDKNEHQQLKIQPTLQLLNQGHIFALGDLADGQDADGNKVPTTAQAALQQA 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ WN+WAA+ RP LPFR+Q+LGEMM LG + A ++ G+ LDG H R+L Y
Sbjct: 313 DYTAWNIWAALTGRPPLPFRYQHLGEMMTLGSDTATLTGL---GLKLDGTAAHIVRRLTY 369
Query: 499 LIRLPTDEHRLKVGVSWLTK 518
L R+PT EH+L+VG++W+++
Sbjct: 370 LYRMPTFEHQLRVGLNWISQ 389
>gi|427714402|ref|YP_007063026.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
gi|427378531|gb|AFY62483.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
Length = 396
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 177/444 (39%), Positives = 253/444 (56%), Gaps = 59/444 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ ILGGGFGGLYTALRL L W+D+ P++ LVDQ++RF+F P LYELL+GE++ WEIA
Sbjct: 4 KVVILGGGFGGLYTALRLGQLPWEDEATPEITLVDQADRFLFTPFLYELLTGELETWEIA 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F+++LA+T +QF + +V + + L P A + YD+LVL+LG
Sbjct: 64 PPFSEILADTPIQFCQAQVSHINLVEKLIALSPQAT-------------LAYDYLVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
VPG + A F TL DA + +L LE K IR+ +VG G SGVELA
Sbjct: 111 GTTPTGQVPGVTDHALMFRTLADAYTLGERLKTLENSRQDK---IRIVIVGAGPSGVELA 167
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+SERL +G ++ ++ + I N+E A + L R+V L L
Sbjct: 168 CKLSERLGNRGRIRLVDRNSQILGGSPSFNQETAQRALEERQVWLDLD------------ 215
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHV 378
PE ++A+ + KY + Q+ E DLV+WTVG++ V
Sbjct: 216 ----TTPEW-----LSANTIALKY-----------KDQVDELPVDLVIWTVGTE-----V 250
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
L +LP N RG+ T TL V +P +FALGD + +RD +G+ +P TAQ AFQ+A
Sbjct: 251 AGAIQAL-ELPKNERGRILTTPTLQVMDYPDLFALGDLADVRDQTGQQVPTTAQAAFQEA 309
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D+ GWN+WA++N RPLLPF + +LGEM+ LG + AA++ G+ LDG + + R+LAY
Sbjct: 310 DYVGWNVWASLNHRPLLPFSYSHLGEMLTLGTDSAALAGL---GLQLDGSLAYLVRRLAY 366
Query: 499 LIRLPTDEHRLKVGVSWLTKSAID 522
L R+PT EH+LKVG W+ +D
Sbjct: 367 LYRMPTLEHQLKVGAKWVLSPLMD 390
>gi|86605567|ref|YP_474330.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-3-3Ab]
gi|86554109|gb|ABC99067.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-3-3Ab]
Length = 404
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 201/444 (45%), Positives = 268/444 (60%), Gaps = 57/444 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L W + PQ+ LVD+ ERFVF P+LYELL+GE++ WE+A
Sbjct: 3 RICILGGGFGGLYTALELICRPWPE--PPQITLVDRQERFVFAPLLYELLTGEMEEWEVA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF DLL GV+F + V+ + DH V L G +EYD LVL+LG
Sbjct: 61 PRFQDLLPE-GVEFRRGAVQSVDLQDH-------------RVFLAEGQTLEYDALVLALG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E L VPGA E AFPF TL DA R+ L LE R+ + I +A+VG G SGVELA
Sbjct: 107 GETPLQGVPGATELAFPFRTLADAQRLRAHLQTLEARDPAQA--IHLAIVGAGASGVELA 164
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL +G ++ I + + I P +REAA L+ R+VQ+ L V I +G
Sbjct: 165 CKLADRLGSRGRIRLIELGSQILSGFAPSSREAAQAALAQRRVQVELQTKVLGIEALG-- 222
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL---VLWTVGSKP--LL 375
E+GA P + L+LQ L +Q DL VLWTVG++P ++
Sbjct: 223 -------ENGAPP----------FRLQLQ----RLAAQEMATDLVDGVLWTVGTRPAAVI 261
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
++ DLP RG+ + TL P IFALGD++A+ D+SG+P+PATAQ AF
Sbjct: 262 ANL--------DLPKTERGRLQVLPTLQTPTFPEIFALGDAAAVLDASGQPVPATAQAAF 313
Query: 436 QQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
QQA + WNLWA + +RPLLPFR+ +LGEM+ LG + A VS + G+TL GP+G+ AR
Sbjct: 314 QQAGYCAWNLWALLTQERPLLPFRYFSLGEMLSLGVDAAVVST--LAGLTLSGPLGYLAR 371
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTK 518
+ AYL+RLPT EH+LKVG +W+ +
Sbjct: 372 RAAYLVRLPTLEHQLKVGWNWIAR 395
>gi|428771870|ref|YP_007163658.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
gi|428686149|gb|AFZ46009.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
Length = 393
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 246/428 (57%), Gaps = 62/428 (14%)
Query: 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGV 152
YTALRL+ L W + P++ L+D+ +RF+F P+LYEL++ E+ +WE+AP + +LL ++ +
Sbjct: 16 YTALRLQELDWGVNF-PEITLIDKGDRFLFSPLLYELITEEMQSWEVAPYYTELLEDSKI 74
Query: 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA 212
F +D V GVN TV L+S +EYD LV++LG V GA
Sbjct: 75 NFIQDTVT--------GVN-----LEQKTVSLQSHDTLEYDRLVIALGGITPSQTVTGAK 121
Query: 213 EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
E+A PF TL DA RV KL +LE K IRVA+VG GYSGVEL +++RL+E+G
Sbjct: 122 EYAIPFRTLNDAYRVKEKLRQLENSEQEK---IRVAIVGGGYSGVELGVKIADRLKERGK 178
Query: 273 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 332
++ I+ + I NR+ A K LS RK+ L + E + E I
Sbjct: 179 IRIIDRGSQILKQSPEFNRKTAEKALSDRKIWL-------------DLETEITAIEENQI 225
Query: 333 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LP 389
S +Y K L I DLVLWTVG+KP+ +L D LP
Sbjct: 226 --------SLQY--------KNLVDTI-PVDLVLWTVGTKPV---------KLLDGLSLP 259
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449
N G+ + L VK +P IFALGD D++G LP+TAQVAFQQ+D+ WN+WA++
Sbjct: 260 QNENGKITINHELQVKDYPEIFALGDLVESLDNNGNILPSTAQVAFQQSDYCAWNIWASL 319
Query: 450 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
D+PLLPFR+Q LGEM+ LG ++A +S GV+LDG + + AR+ YL RLPT +H+L
Sbjct: 320 KDKPLLPFRYQPLGEMISLGVDNATLSGL---GVSLDGGLAYLARRFVYLYRLPTPKHQL 376
Query: 510 KVGVSWLT 517
KVG+SWL+
Sbjct: 377 KVGLSWLS 384
>gi|255080304|ref|XP_002503732.1| predicted protein [Micromonas sp. RCC299]
gi|226518999|gb|ACO64990.1| predicted protein [Micromonas sp. RCC299]
Length = 554
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 268/479 (55%), Gaps = 56/479 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQD-DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
PR+ ILGGGFGGLYTAL+L++L W D K+P V LVD++ERFVFKPMLYEL++ + WE
Sbjct: 65 PRVVILGGGFGGLYTALKLDALTWPDASKRPVVTLVDRAERFVFKPMLYELVNETMSDWE 124
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLG-VNGPMACTHGGTVLLESGLIVEYDWLVL 197
+AP F DLL T V++ + V + D + +G + GGT+ L SG VEYDWLV+
Sbjct: 125 VAPAFEDLLKPTSVRYVRGDVAAVRTGDAVPFADGSTGSSGGGTIELASGETVEYDWLVV 184
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER-----RNFGKDSLIR-VAVVG 251
++G PG+ +FA P STLEDA R+ + ++E R G + R VAVVG
Sbjct: 185 AVGTASADAKCPGSKDFAIPLSTLEDARRLAGAMRDVEAAFETDRAAGSGARSRKVAVVG 244
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G SGVELA V+ERL K ++ I P PG R+AA + L A V
Sbjct: 245 GGLSGVELAGVVAERLAGKASIELFASGAGIMPESPPGQRDAARRRLDAAGVTT------ 298
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDK-----YILELQPAIKGLESQIFEADLVL 366
R G + +P SG + + S L A +S+ + D+V
Sbjct: 299 ----RAGTRAIKISEPSSGVPSGVPSGVPSSPDARLPSAASLTYAQGDFDSRTEDYDVVC 354
Query: 367 WTVGSKPLLPHVEP-PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-- 423
W VG + P P P +R + + T+ TL V+GH R+FA+GD + + DS+
Sbjct: 355 WAVGQRVEAPESWPFPRDRRTN-------KIVTERTLRVRGHGRVFAVGDVARVWDSTSA 407
Query: 424 GRP----------------------LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 461
G P LPATAQVAFQQAD+A WN+W++++ RPLLPF++Q+
Sbjct: 408 GLPEGGDAPNTFQNAAAPPPDRFDVLPATAQVAFQQADYAAWNVWSSLSSRPLLPFKYQH 467
Query: 462 LGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSA 520
+G+MM+LG+ DAAV+ V TLDGP+ + R+ AYL R+PT+EHR K+ SWL + A
Sbjct: 468 IGDMMVLGKTDAAVALP-VGDATLDGPLAAALRRAAYLYRMPTNEHRAKLATSWLEQGA 525
>gi|16330375|ref|NP_441103.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|383322116|ref|YP_005382969.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325285|ref|YP_005386138.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491169|ref|YP_005408845.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436436|ref|YP_005651160.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451814533|ref|YP_007450985.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|1652865|dbj|BAA17783.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|339273468|dbj|BAK49955.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|359271435|dbj|BAL28954.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274605|dbj|BAL32123.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277775|dbj|BAL35292.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958295|dbj|BAM51535.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451780502|gb|AGF51471.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
Length = 404
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 179/442 (40%), Positives = 248/442 (56%), Gaps = 55/442 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRICILGGGFGGLYTALRL L W+ P+++LVDQ +RF+F P LYEL++ E+ WE
Sbjct: 5 RPRICILGGGFGGLYTALRLGQLSWEGHTPPEIVLVDQRDRFLFAPFLYELVTEEMQTWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F +LLA +GV F + V + DH V + GT ES + +D LV++
Sbjct: 65 IAPPFVELLAESGVIFRQAEVTAI-DFDHQKV--LLNDQDKGT---ES---LAFDQLVIA 115
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG + L +PG ++ F TLEDA ++ +KL LE+ + K IR+A+VG GYSGVE
Sbjct: 116 LGGQTPLPNLPGLKDYGLGFRTLEDAYKLKQKLKSLEQADAEK---IRIAIVGGGYSGVE 172
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LAA + +RL E+G ++ I I NR+ A LSA+ + + V I
Sbjct: 173 LAAKLGDRLGERGRIRIIERGKEILAMSPEFNRQQAQASLSAKGIWVDTETTVTAI---- 228
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS--KPLLP 376
+ L+ + + + DLVLWTVG+ PL+
Sbjct: 229 ---------------------TATDVTLQFRE-----QEDVIPVDLVLWTVGTTVSPLIR 262
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
++ LP N +GQ T+ L V+G IFALGD + RD+SG+ +P TAQ AFQ
Sbjct: 263 NLA--------LPHNDQGQLRTNAQLQVEGKTNIFALGDGAEGRDASGQLIPTTAQGAFQ 314
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q D+ WN+WA + RPLLP R+Q LGEM+ LG + A +S G+ L GP AR+L
Sbjct: 315 QTDYCAWNIWANLTGRPLLPCRYQPLGEMLALGTDGAVLSGL---GIKLSGPAALLARRL 371
Query: 497 AYLIRLPTDEHRLKVGVSWLTK 518
YL R PT +H+L VG++WLT+
Sbjct: 372 VYLYRFPTWQHQLTVGLNWLTR 393
>gi|218440048|ref|YP_002378377.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7424]
gi|218172776|gb|ACK71509.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7424]
Length = 397
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 187/435 (42%), Positives = 252/435 (57%), Gaps = 59/435 (13%)
Query: 90 GGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
GGLYTALRL+ W + KP+++LVD+S+RF+F P+LYEL++GE+ +WEIAP F +LLAN
Sbjct: 16 GGLYTALRLDEFSWSNSHKPEIILVDKSDRFLFSPLLYELVTGEMQSWEIAPPFDELLAN 75
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
T ++F V L SD L V L++ + YD LV++LG + LD VP
Sbjct: 76 TNIRFHHGCVSDLNISDSL-------------VHLDNQETLSYDKLVIALGGQTPLDFVP 122
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
GA E+A PF TL+DA + +KL ELE+ N K IRV VVG GYSGVELA +++RL E
Sbjct: 123 GAKEYAIPFRTLQDAYHLGQKLKELEQSNSEK---IRVVVVGGGYSGVELACKLADRLGE 179
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
+G ++ + + I + P NR AA K L R V + L
Sbjct: 180 RGRIRIVELGEDILNSSPPHNRNAAKKALEERLVWIDL---------------------E 218
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHD 387
I I AD S Y KG + ADLVLWTVG+K + + P NR
Sbjct: 219 TKIEEITADTVSLLY--------KG-QVDTIPADLVLWTVGTKVSDFIKSLPLPQNRAGK 269
Query: 388 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447
L N+ QAE HP I+ LGD + RD +G+ +PATAQVA QQAD+ WNLWA
Sbjct: 270 LVTNSFLQAE--------NHPNIYILGDIADCRDKNGQQVPATAQVALQQADYCAWNLWA 321
Query: 448 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
+I +RP+LPF++Q LGEMM LG ++A V+ G+ LDG + + R+L YL R PT +H
Sbjct: 322 SIMERPMLPFQYQGLGEMMTLGVDNATVNSL---GLKLDGTLAYLTRRLLYLYRFPTLKH 378
Query: 508 RLKVGVSWLTKSAID 522
RL VG +WLT+ ++
Sbjct: 379 RLAVGFNWLTQPIME 393
>gi|307151366|ref|YP_003886750.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306981594|gb|ADN13475.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 397
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 184/435 (42%), Positives = 251/435 (57%), Gaps = 59/435 (13%)
Query: 90 GGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
GGLYTALRL W++ KP+++LVD+S+RF+F P+LYEL++GE+ +WEIAP F +LLA+
Sbjct: 16 GGLYTALRLSEFSWENSHKPEIVLVDKSDRFLFSPLLYELVTGELQSWEIAPPFEELLAD 75
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
T + F H G + V L++G + YD LVL+LG + LD VP
Sbjct: 76 TKIHF------------HHGCVNQIDLEQ-SQVQLDNGKNLTYDKLVLALGGQTPLDFVP 122
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
GA E+A PF TLEDA R+ ++L ELE+ K IRV VVG GYSGVELA +++RL E
Sbjct: 123 GAKEYAIPFRTLEDAYRLAQRLKELEQSQLDK---IRVVVVGGGYSGVELACKLADRLGE 179
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
+G ++ + + +I T NR AA K L R V L + E V++
Sbjct: 180 RGRIRIVEMSESILNTSPEFNRNAAKKALEERLVWL-------------DLETKVEE--- 223
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHD 387
I A+ S Y ++ P DLVLWTVG+K + + P NR
Sbjct: 224 -----ITAETISLVYKGQVDP---------IPVDLVLWTVGTKVSDFIKSLSLPQNRAGK 269
Query: 388 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447
L N+ QAE HP I+ LGD + RD G+ +PATAQVA QQAD+ WN+WA
Sbjct: 270 LVTNSFLQAE--------NHPSIYVLGDLADCRDKDGQLVPATAQVAIQQADYCAWNVWA 321
Query: 448 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
+I RPLLPFR+Q LGEMM LG ++A +S GV +DG + + AR+L YL R PT +H
Sbjct: 322 SIMGRPLLPFRYQGLGEMMTLGIDNATLSSM---GVKMDGTLAYLARRLLYLYRFPTLKH 378
Query: 508 RLKVGVSWLTKSAID 522
RL VG +WL++ ++
Sbjct: 379 RLAVGFNWLSRPVLE 393
>gi|443476165|ref|ZP_21066085.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena biceps PCC 7429]
gi|443018927|gb|ELS33101.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena biceps PCC 7429]
Length = 398
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 250/444 (56%), Gaps = 59/444 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L L W P+++LVD+S+RF+F P LYEL++ E+ WEIA
Sbjct: 3 RICILGGGFGGLYTALNLSRLPWA--VMPEIILVDKSDRFLFTPFLYELVTKEMQEWEIA 60
Query: 141 PRFADLLANTGVQFFKDRV-KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P FA+LL+NTG+QF + V + S + VN + ++++YD L+L++
Sbjct: 61 PTFAELLSNTGIQFVQGLVTNIDLESKQVEVN------------VGQPIVLDYDRLLLAI 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G E +++V GA E+A PF L+D R++ KL LE N K IRV + G G SGVEL
Sbjct: 109 GGETPMNLVDGAQEYAIPFRNLKDFYRLNSKLELLEASNREK---IRVCIAGGGSSGVEL 165
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +++RL+++G V+ ++ + I T R+ A LS R V L V +VG+
Sbjct: 166 ACKIADRLKDRGRVRLVDRNSQILSNSTQSTRQIAELALSQRGVWTDLNTRV---SQVGD 222
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E ++ S D+VLWTVGS
Sbjct: 223 EEVTLDYTNG---------------------------SDTLPVDIVLWTVGST------- 248
Query: 380 PPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ L DLP+ + +G T+ TL VKG+P +FA+GD ++ D+ +PATAQVAFQQ+
Sbjct: 249 -FSKMLRDLPVEHKQGAIATEATLQVKGYPYVFAIGDLASCVDAQDHLVPATAQVAFQQS 307
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
+ WN+WA++N + L+PF + LGE + LG + A + S + ++DG + R+ AY
Sbjct: 308 QYCAWNIWASLNQKSLIPFSYIPLGEFISLGIDGA--TASILGKFSIDGLPAQAMRRFAY 365
Query: 499 LIRLPTDEHRLKVGVSWLTKSAID 522
L+R+PT EH+ K+G WLTK I+
Sbjct: 366 LLRMPTFEHQWKIGTHWLTKPLIE 389
>gi|145346170|ref|XP_001417566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577793|gb|ABO95859.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 493
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 183/435 (42%), Positives = 255/435 (58%), Gaps = 41/435 (9%)
Query: 91 GLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT 150
GLYTALRL+SL W + +P++ +VD++E FVFKP+LYEL++ ++ WE+AP F +LL T
Sbjct: 65 GLYTALRLDSLEWAGETRPEITVVDRAEAFVFKPLLYELVNETLEPWEVAPTFEELLKPT 124
Query: 151 GVQFFKDRVKLLCPSDHLGV-NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
V K V P D + +G GG++ L G + YD+LVL+LG V
Sbjct: 125 KVTHVKGEVVSFEPEDRGTMRDGTPYSATGGSITLGDGTTLAYDYLVLALGTSTSDGGVA 184
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
GA E A +T EDA R+ L ELER G+D+ RVAV+G G SGVELA+ ++ERL
Sbjct: 185 GARECAVALNTAEDAVRIAGVLGELER--AGRDA--RVAVIGGGLSGVELASVIAERLNG 240
Query: 270 K---GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 326
K G+V I + T PG REAAL+VL +V +V G +R + +V E +V
Sbjct: 241 KSTNGVVDVITPNKRVMATAPPGQREAALRVLEKARVNVVGGRVMR-LDKVANDEETV-- 297
Query: 327 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 386
+ K L +G+E+ DLV WTVG + P P
Sbjct: 298 ------------STASKITLADDDGAEGVETY----DLVCWTVGQRAETPSDWP------ 335
Query: 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSA----LRDSSGRPLPATAQVAFQQADFAG 442
+ + +TD TL V GH RI+A+GD+S+ + ++ LP+TAQVAFQQAD+A
Sbjct: 336 -VATTPARKIKTDATLRVNGHSRIYAVGDASSSSAEVMNADWDHLPSTAQVAFQQADYAA 394
Query: 443 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTLDGPIGHSARKLAYLIR 501
WN+WA++N R LPFR+Q+LG+MM+LG DAAV+ P V +TL+GP + R+LAYL R
Sbjct: 395 WNIWASMNGRTELPFRYQHLGDMMVLGSLDAAVAFP--VGDITLEGPAAAALRRLAYLYR 452
Query: 502 LPTDEHRLKVGVSWL 516
+PT+EHRLK+G W+
Sbjct: 453 MPTNEHRLKLGSKWI 467
>gi|428220958|ref|YP_007105128.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
gi|427994298|gb|AFY72993.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
Length = 401
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 179/443 (40%), Positives = 263/443 (59%), Gaps = 51/443 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL+L L W +P+++L+D+++RFVF P+LYEL++GE++ WEIA
Sbjct: 3 RICILGGGFGGLYTALQLNQLPWT--VQPEIILIDRNDRFVFSPLLYELITGELETWEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI-VEYDWLVLSL 199
P F++LL+ +GV+F + V +D N ++ T+ LL + +I +YD LVL+L
Sbjct: 61 PTFSELLSGSGVRFVQGNV-----TDIDIANCQVSLTNS---LLPTEVISFKYDRLVLAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G E +D+V GA E+A PF TL DA R+ +L +LE+ K IRV + G G SGVEL
Sbjct: 113 GGETPVDLVSGALEYAIPFRTLADAQRLQLRLLQLEQ---SKPEKIRVCIAGAGSSGVEL 169
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +S+RL+ G V+ ++ T+I NR AA + L++R + L + +G+
Sbjct: 170 ACKISDRLQGIGRVRIVDRNTSILANSPISNRIAAERALASRGIWTDL---CTNVAHIGD 226
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
E + N A+ ++ D+VLWTVG+ L +
Sbjct: 227 GE---------ILLNYASGSDT------------------LPVDIVLWTVGNS--LSKLA 257
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439
N H + RGQ + TL V+GH +IFALGD + RD +G+ LPATAQVAFQQA
Sbjct: 258 RSLNLPHS---SGRGQIIIEPTLQVQGHEQIFALGDIAECRDPAGQILPATAQVAFQQAQ 314
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 499
+ N+WA++N L+PF + LGE M LG+++AA+S GV +G AR+LAYL
Sbjct: 315 YCARNVWASLNQHALIPFTYLALGEFMSLGKDNAAMSIFGQFGV--EGVPALIARRLAYL 372
Query: 500 IRLPTDEHRLKVGVSWLTKSAID 522
+R+PT +H++KVG +WL++ D
Sbjct: 373 LRMPTFQHQVKVGFNWLSRPLFD 395
>gi|170078719|ref|YP_001735357.1| type II NADH dehydrogenase B [Synechococcus sp. PCC 7002]
gi|22652018|gb|AAN03563.1|AF381044_1 type II NADH dehydrogenase B [Synechococcus sp. PCC 7002]
gi|169886388|gb|ACB00102.1| type II NADH dehydrogenase B [Synechococcus sp. PCC 7002]
Length = 390
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 170/440 (38%), Positives = 237/440 (53%), Gaps = 60/440 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P I I+GGGF GLYTALRL W+ ++P + L+D+ FVF P+LYEL++ E+ WE
Sbjct: 3 QPHIVIIGGGFAGLYTALRLLQFPWETSQRPDITLIDRQNHFVFSPLLYELITEEMQPWE 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+AP + +LL + V+F + +V+ + P V G T YD+LV++
Sbjct: 63 VAPTYTELLRHGPVKFVQTQVQTVDPEQKNVVCGDRQIT--------------YDYLVIA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
G K +PG E+A PF TL DA + KL LE K IR+A+VG GYSGVE
Sbjct: 109 AGGTTKFVNLPGIKEYALPFKTLNDALHLKEKLRALETSVAEK---IRIAIVGGGYSGVE 165
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA +++RL ++G ++ I+ I N+ AA + L AR G +V V
Sbjct: 166 LACKLADRLGDRGRLRIIDRGDEILKNAPKFNQLAAKEALEAR------GIWVDYATEVT 219
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
E + AD S +Y KG E ADLVLWT G + P V
Sbjct: 220 E---------------VTADSLSLRY--------KG-EVDTIPADLVLWT-GGTAIAPWV 254
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ LP G+ + + L ++ HP IFALGD + D+ LP TAQVA QQA
Sbjct: 255 KD-----LALPHAGNGKLDVNAQLQIQNHPNIFALGDVAQAEDN----LPMTAQVAIQQA 305
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D WNL I ++PLLPF+F NLGEM+ LG N+A +S G+ L+G + H AR+L Y
Sbjct: 306 DVCAWNLRGLITNKPLLPFKFFNLGEMLTLGENNATLSGL---GLELEGNLAHVARRLVY 362
Query: 499 LIRLPTDEHRLKVGVSWLTK 518
L RLPT EH+++VG++WL +
Sbjct: 363 LYRLPTWEHQVQVGLNWLVQ 382
>gi|449017630|dbj|BAM81032.1| NADH dehydrogenase type II, chloroplast precursor [Cyanidioschyzon
merolae strain 10D]
Length = 607
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 179/550 (32%), Positives = 272/550 (49%), Gaps = 85/550 (15%)
Query: 21 AWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKP 80
AW LF + + + + R A S S R + + ED+ S++ +P
Sbjct: 30 AWPHLFSGAQRVERGRRATSQGRR---ARSLLSTRTFCMSSSQEDQPKSKSMA---SLRP 83
Query: 81 RICILGGGFGGLYTALRLESLVWQDD---------------------------------- 106
++C+LGGGFGGLYTALRL L W D
Sbjct: 84 KVCVLGGGFGGLYTALRLCQLPWGRDLRRYEAAARTPQRESTFSVDNSERRRASDTSKQS 143
Query: 107 ----------KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156
+P++ L+D ERFVF P+LYEL++GE+ WE+AP FA+LL +T V F +
Sbjct: 144 ASQRLVAGQRTRPELTLIDTRERFVFLPLLYELVTGEMGIWEVAPPFAELLEDTDVDFLQ 203
Query: 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAF 216
+V+ + PM ++ ES I+ YD LV++LG+E D+VPGA E A
Sbjct: 204 AQVQHIDLDKRRVTVRPMMPSNASES-KESDEIISYDRLVIALGSEDTRDMVPGAREHAL 262
Query: 217 PFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276
F ++EDA R+ ++ LE IR+ +VG GYSGVELA +S+RL + +Q +
Sbjct: 263 GFRSVEDAIRIRERVRLLE---SSSQPTIRIVIVGGGYSGVELACNLSDRLGPRAQIQIV 319
Query: 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 336
+ + T NR A + L R + V E SV ++
Sbjct: 320 DRGRELMAASTAYNRSQATRALRLRNISFVP-------------ETSVVSVGPNSLRLSY 366
Query: 337 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 396
A+K+ D+ A E+ + + DLVLWT G++ + + + N RGQ
Sbjct: 367 AEKSGDR-------APPASETTLEQIDLVLWTAGNR-INKVIREGLIASRQVERNERGQL 418
Query: 397 ETDETLCVKGHPRIFALGDSSALRD--------SSGRPLPATAQVAFQQADFAGWNLWAA 448
TD L + +P + LGD++ +R+ + +P TAQ+A Q+ADFA WN WA+
Sbjct: 419 LTDRFLRLPNYPEVIVLGDAAQIREPVAAVPVVTREQPRGMTAQIALQEADFAAWNTWAS 478
Query: 449 INDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 508
+ R LPF++ +LGEM+ LGR+D +V + + L GP+ H R+LAY+ R+PTD HR
Sbjct: 479 LTGREPLPFQYVHLGEMITLGRDDGSV--QLLGLLNLSGPLAHQLRRLAYIARMPTDAHR 536
Query: 509 LKVGVSWLTK 518
L+VG S++ +
Sbjct: 537 LRVGASYVAQ 546
>gi|56751607|ref|YP_172308.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81301317|ref|YP_401525.1| type 2 NADH dehydrogenase NdbB [Synechococcus elongatus PCC 7942]
gi|15620546|gb|AAL03930.1|U30252_18 DhnA [Synechococcus elongatus PCC 7942]
gi|56686566|dbj|BAD79788.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81170198|gb|ABB58538.1| type 2 NADH dehydrogenase NdbB [Synechococcus elongatus PCC 7942]
Length = 398
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 176/438 (40%), Positives = 249/438 (56%), Gaps = 56/438 (12%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTAL L WQ +P + L+D+ +RFVF P+LYEL++GE+ WE+AP
Sbjct: 8 ICILGGGFGGLYTALALAQQSWQGASRPPIHLIDRGDRFVFLPLLYELITGELQGWEVAP 67
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
R+ DLLANT VQF + V + L V+LESG + E+ LVL+LG
Sbjct: 68 RYRDLLANTPVQFHRGVVSEVDLQQQL-------------VVLESGQVFEFGQLVLALGG 114
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
E D+ PGA A PF +L+DA ++ +LSELE + D IR+A+VG G SGVELA
Sbjct: 115 ETPRDLAPGAETHALPFRSLDDAIALNTRLSELEHQ---PDRQIRIAIVGAGPSGVELAC 171
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
+++RL ++ ++ I + I NREAA + L R++ L L V +
Sbjct: 172 KLADRLGDRAWIRLIELGEDILRNSPEFNREAAERALQQRQILLDLKTGVAAV------- 224
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ-IFEADLVLWTVGSKPLLPHVEP 380
+D +L+ +G +++ + DLVLWTVG++ P
Sbjct: 225 ------------------EADAIVLQ-----RGEQTERLSNIDLVLWTVGNRV------P 255
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
DLP NARGQ +T TL + GH +FALGD + L G+ +PATAQ AFQQA+
Sbjct: 256 AAVAALDLPKNARGQLQTALTLQISGHNNLFALGDLAELPLVDGKAIPATAQAAFQQANC 315
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
NL A ++PL F++Q LGEM+ LG +A ++ G+TL+GP+ AR+LAYL
Sbjct: 316 LAANLIAQRREQPLSDFQYQALGEMLALGSGNATLTGL---GLTLEGPLAAVARRLAYLY 372
Query: 501 RLPTDEHRLKVGVSWLTK 518
R+PT + +VG++WL +
Sbjct: 373 RMPTPTQQCRVGLNWLLQ 390
>gi|37523072|ref|NP_926449.1| NADH dehydrogenase [Gloeobacter violaceus PCC 7421]
gi|35214075|dbj|BAC91444.1| glr3503 [Gloeobacter violaceus PCC 7421]
Length = 406
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 168/441 (38%), Positives = 246/441 (55%), Gaps = 55/441 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGGF GL+TAL LE+ ++D++ P++LL+D+SERFVF P+LYEL+SGE+ WE+A
Sbjct: 13 RIVIVGGGFAGLFTALGLEAYPFKDER-PEILLIDRSERFVFSPLLYELVSGELATWEVA 71
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF +LL T V+F + ++ +G + V L G YD L L++G
Sbjct: 72 PRFDELLEGTRVRFVQ--------AEAMGFD-----FENRIVKLAGGGAESYDRLALTVG 118
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+D+VPGA E A PF TLEDA + +L + G D +R A+VG G SGVELA
Sbjct: 119 GSTPVDIVPGAREHALPFRTLEDAQALIARLKA--ALDAGADP-VRAALVGAGASGVELA 175
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++ L +KG + + I R+ A L R+V+L L + + G
Sbjct: 176 CKLADTLGDKGSIVLFDRAADILAEFDAPERKMARAELEKRRVRLGLSTKILSVSDAG-- 233
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
L+++ A +G+E+ A++VLWTVG+ P
Sbjct: 234 -------------------------LQVETAGRGVEA--IPAEVVLWTVGT------AVP 260
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
+ DLP G+ + TL V+GHP IFALGD +A D+ G+PL +AQ+AFQQA +
Sbjct: 261 GLIKDLDLPKGPGGRLAVEPTLQVQGHPEIFALGDLAASLDAGGKPLGPSAQLAFQQAGY 320
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
WNLWA+++DRPLL FR+ LG+++ LG + S + G + GP + R+LAYL
Sbjct: 321 CAWNLWASLSDRPLLAFRYNALGKLLGLGIDSGVAS---LLGTAVGGPPAYLIRRLAYLY 377
Query: 501 RLPTDEHRLKVGVSWLTKSAI 521
R+PTD HRLKV + W ++ +
Sbjct: 378 RMPTDAHRLKVALHWASRPVV 398
>gi|254409363|ref|ZP_05023144.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183360|gb|EDX78343.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 420
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 171/454 (37%), Positives = 253/454 (55%), Gaps = 73/454 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTAL L+ K ++ L+D+ + VF P+LYE ++ E+ AWEIAP
Sbjct: 9 ICILGGGFGGLYTALYLQRFRLFKSPKYKITLIDRKDHLVFTPLLYERVTQELQAWEIAP 68
Query: 142 RFADLLANTGVQFF----------KDRVKL-LCPSDHLGVNGPMACTHGGTVLLESGLIV 190
R+ L+ NT + F K +VKL L LG N I+
Sbjct: 69 RYRTLIENTTIDFCQGNIQAVDLEKRQVKLQLDTLSELGQNLK---------------IL 113
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
Y++LVL++GAE +LD VPGAA +A+PF T+ DA R++++L++LE+ N + IRVAV+
Sbjct: 114 NYNYLVLAVGAEMRLDGVPGAATYAYPFRTVTDAERLNQQLNQLEQSNLPQ---IRVAVI 170
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G SGVELA +S+RL+E+G ++ I + T TP ++++A + L+AR+VQ+
Sbjct: 171 GAGPSGVELACKLSDRLQERGQIRLIERGQQLLKTFTPYSQKSAYRALTARRVQM----- 225
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+F SV+ ES I I + + + DLVLWTVG
Sbjct: 226 --------DFVTSVEAIESDQITLINQNGKT-----------------LMPVDLVLWTVG 260
Query: 371 SKPLLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
++ + + LP N +G+ T TL V +P + ALGD + ++D G+ LP
Sbjct: 261 TRSI--------EWVRHLPCQQNPQGKILTHPTLQVADYPEVLALGDMADIQDYPGQ-LP 311
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
TAQVA+QQAD A NL+ A+ + L PFR+ +LGEM+ LG+ +A VS SF + + G
Sbjct: 312 KTAQVAYQQADCAAKNLYRAVRRKRLKPFRYLHLGEMLTLGKGEAVVS-SF--AMKISGR 368
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
+ R+ YL RLPT HR +V W+ + ++
Sbjct: 369 LAGMIRQFVYLQRLPTLRHRWRVLQHWVGQWLVN 402
>gi|428771369|ref|YP_007163159.1| NADH dehydrogenase [Cyanobacterium aponinum PCC 10605]
gi|428685648|gb|AFZ55115.1| NADH dehydrogenase [Cyanobacterium aponinum PCC 10605]
Length = 398
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 167/442 (37%), Positives = 250/442 (56%), Gaps = 60/442 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K +I ILGGGFGGLYTA++L WQ+ P+++L+D+++RF+F P+LYEL++ E+ +W
Sbjct: 3 KVNKIVILGGGFGGLYTAIKLAQFPWQE-SNPEIVLIDKNDRFLFSPLLYELITDEMQSW 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E+AP + +LL+NT ++F +D V + + + L++ + YD+LV+
Sbjct: 62 EVAPSYYELLSNTSIRFLQDTVTEIDDT-------------ARQISLKNNGDLSYDYLVM 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+LG + ++ V GA++FA PF TLEDA RV KL LE + IRV VVG GYSGV
Sbjct: 109 ALGGKTPVNQVSGASDFAIPFRTLEDAYRVKEKLRVLENSDL---EAIRVVVVGGGYSGV 165
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA V++RL ++G ++ ++ + I NR+ A K L R + L
Sbjct: 166 ELALKVADRLGKRGKIRIVDRGSEILSDSPEFNRKTAEKALRDRTIWTDL---------- 215
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLL 375
+ NI S Y ++QI DLVLWTVG+KP++
Sbjct: 216 -----------ETEVTNITEKDISLSY-----------KNQIDTIPVDLVLWTVGTKPVM 253
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ P NA+G+ E + L VK + ++ALGD D G+ LPATAQVAF
Sbjct: 254 LEKKFP------FATNAQGKIEINSYLQVKDNSVVWALGDLVECYDQQGKKLPATAQVAF 307
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
QQAD+ WN+WA I ++PLL F++Q LGEM+ LG++ A +S + +G+ AR+
Sbjct: 308 QQADYCAWNIWATIENKPLLAFKYQPLGEMLALGKDSATISGLGLSLGGG---LGYLARR 364
Query: 496 LAYLIRLPTDEHRLKVGVSWLT 517
L YL RLPT EH++ V ++W+T
Sbjct: 365 LIYLYRLPTFEHQMAVAMNWIT 386
>gi|452823598|gb|EME30607.1| NADH dehydrogenase [Galdieria sulphuraria]
Length = 474
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 165/441 (37%), Positives = 238/441 (53%), Gaps = 47/441 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILGGGFGGLYTAL L W KP++ LVD+S+RFVF PMLYE+ G++D W++
Sbjct: 66 PKITILGGGFGGLYTALTLSRYPWTRLTKPKITLVDRSDRFVFLPMLYEVAFGQLDKWQV 125
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F+ LL T V+F +V+ + D + T G +D LV+++
Sbjct: 126 APTFSQLLQGTDVEFVLGQVEKV---DVQKSTCEIFSTKYGQKEF------YHDRLVIAI 176
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G EP L VPGA ++A PF TLE A ++ +KL L + ++ + V+G YSGVEL
Sbjct: 177 GTEPSLSSVPGADKYALPFRTLEHAEQLKQKLVNLTKMRRQQNRKPVIFVIGGSYSGVEL 236
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A+ V+E + V ++ + + NR AL+ L + V+ +L V C V E
Sbjct: 237 ASNVAEYFRGEARVCIVDRGNRLLDAASEHNRNVALQTLRSLNVESLLDMEVSC---VTE 293
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP--LLPH 377
S+K +Q + + E + F+ADLVLWT G KP L
Sbjct: 294 NAVSLK---------------------SIQESTQESEKK-FDADLVLWTAGFKPSSWLQF 331
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
V L + G+ T TL H IF LGD++A+ D +G+ ATAQVA QQ
Sbjct: 332 VA--------LEKDPTGRILTSSTLQATRHDNIFVLGDAAAVTDVNGQRCKATAQVAIQQ 383
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
A+ A WN+WA++ ++ +PFR+++LGE+M LG+ + V G+ L G R+LA
Sbjct: 384 AECAAWNIWASLCNKKPVPFRYEHLGELMTLGKYNGTAE---VFGIPLSGTSAQFTRRLA 440
Query: 498 YLIRLPTDEHRLKVGVSWLTK 518
YL R+PT+ HRLKVG +W+ K
Sbjct: 441 YLFRMPTNLHRLKVGQNWVFK 461
>gi|427725118|ref|YP_007072395.1| NADH dehydrogenase [Leptolyngbya sp. PCC 7376]
gi|427356838|gb|AFY39561.1| NADH dehydrogenase [Leptolyngbya sp. PCC 7376]
Length = 394
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 166/447 (37%), Positives = 242/447 (54%), Gaps = 59/447 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ I I+GGGF GLYTALRL W+D P++ L+D+ + FVF P+LYEL++ E++ WE
Sbjct: 3 QKHIVIIGGGFAGLYTALRLVEFPWEDATCPEITLIDRQDHFVFSPLLYELITEEMEPWE 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+APR+ LL N+ +Q+ + +V + + TV+ + YD+LV++
Sbjct: 63 VAPRYTKLLENSSIQYRQTQVTSVDVA-------------ARTVICNEQEPISYDYLVIA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
G K +PG E A PF +L+DA R+ KL LE K IR+AVVG GYSGVE
Sbjct: 110 AGGTTKTLDIPGLKENAIPFKSLDDALRLKDKLRLLENSEAEK---IRIAVVGGGYSGVE 166
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LA +++RL ++G ++ I+ I N+ AA + L A+K+ +
Sbjct: 167 LACKLADRLGDRGRLRLIDRGKEILDNAPKFNQTAAKEALEAKKIWV------------- 213
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
++E V G P + LE + + + DLV+WTVG+ + P V
Sbjct: 214 DYETKV----VGLTPETIS--------LEYKDQVDEI-----PVDLVMWTVGNA-IAPWV 255
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
E DLP G+ E E L V HP IFALGD + + LP TAQVA QQA
Sbjct: 256 EA-----LDLPHAENGRLEISEKLQVNDHPNIFALGDVAQF----DQDLPMTAQVAIQQA 306
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
D WNL + I ++PLL F F +LGEM+ LG ++A +S G+ LDG + H AR+L Y
Sbjct: 307 DVCAWNLRSLIEEKPLLSFNFYDLGEMLTLGEDNATLSGL---GIELDGNLAHIARRLVY 363
Query: 499 LIRLPTDEHRLKVGVSWLTKSAIDSVA 525
L RLPT +H+L VG++W+ + + +A
Sbjct: 364 LYRLPTWQHQLNVGLNWMVQPVVKFLA 390
>gi|412988518|emb|CCO17854.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bathycoccus prasinos]
Length = 513
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 178/467 (38%), Positives = 253/467 (54%), Gaps = 67/467 (14%)
Query: 93 YTALRLESLVWQ----DD----KKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
Y AL+L+SL DD KKP V L+D +E+F+FKP++YELL+ +++ ++AP
Sbjct: 58 YCALKLDSLFATNTRGDDSGEKKKPTMIVTLIDTNEKFLFKPLMYELLNSDMEETDVAPL 117
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGV-NGPMACTHGGTVLL-----ESGLIVEYDWLV 196
+ +LL NT V+F + + P L +G GG V++ + V+YD+LV
Sbjct: 118 YEELLENTTVRFLQKEAMRVEPEKVLKTKSGSKVSGTGGEVIVRDVETKEEERVKYDYLV 177
Query: 197 LSLGA----EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGC 252
+SLGA E + + V GA EFA PF+ L+D R+ K+ L + + + VAVVG
Sbjct: 178 VSLGAKVDFESEKNFVKGAREFAMPFNGLDDVKRMREKIERL-KEDGAERGERTVAVVGA 236
Query: 253 GYSGVELAATVSERLE-EKGI----VQAINVETTICPTGTPGNREAALKVLS-ARKVQLV 306
GY+GVELA ++ E E G+ ++ + + + + T G + AA K L A V++V
Sbjct: 237 GYAGVELALCLARWFEREDGLKDVKIKLVAKDGKVLSSATVGGKNAARKALEKASNVEIV 296
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G VG E S ES + NI+ K +++ +ES D+
Sbjct: 297 DGV-------VGAIERS--SSESSKV-NISLTKG--------DSSLQTIES----VDMCC 334
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA---RGQAETDETLCVKGHPRIFALGDSSALR--- 420
WTVG LP E +D P G+ TD TL V G+ R+FALGD+S R
Sbjct: 335 WTVGLSAKLPTSE------NDWPFEQDPRTGKIVTDSTLKVAGYDRVFALGDNSIQREYE 388
Query: 421 --DSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
D++ R PATAQVAFQ AD+ WN+W+AIN + LLPFR+Q+LG+MM LG +AAV
Sbjct: 389 KKDAANREEEKPATAQVAFQAADYCAWNVWSAINKKSLLPFRYQHLGDMMTLGDKEAAVQ 448
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 523
E TLDG + R+LAYL R+PT+ RLK+G WL SAI S
Sbjct: 449 FPVGEETTLDGSAAFALRRLAYLYRMPTNGQRLKIGRKWL--SAISS 493
>gi|149980664|gb|ABR53723.1| putative type II NADH dehydrogenase [Chlamydomonas reinhardtii]
Length = 602
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 197/546 (36%), Positives = 264/546 (48%), Gaps = 85/546 (15%)
Query: 43 RFISFAASNSSGRNGDLVVTSE--DESASQTYTWPDKKKPRICILGGGFGGLYTALRLES 100
R + F A+ S +G V ++ A T PR+ +LGGGFGGLY A+RLE
Sbjct: 54 RLMGFRAAGSQAPHGARAVATQATGSPAFGPGTSSGHHSPRVVVLGGGFGGLYAAVRLEQ 113
Query: 101 LVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVK 160
L+W KPQ+ LVDQ++RFVFKP+LYEL++G A E++P F LLA ++F + +V
Sbjct: 114 LMWPRGNKPQITLVDQADRFVFKPLLYELINGAATADEVSPSFEQLLAPYPIRFVQAQVA 173
Query: 161 LLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFS 219
+ P+ V L G + YD+LV++LG +P VPG E+A PF+
Sbjct: 174 SVSPAAPHADAPDPDAPDAAGAVTLSDGTQLPYDFLVVALGGQPDSRGVPGVKEWAVPFA 233
Query: 220 TLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279
EDA RV L L G ++ A Y+GVELAATV+ERL +G A+ V+
Sbjct: 234 GYEDALRVKGTLDLLSDAGAGGCVVVVGAG----YAGVELAATVAERLRARGAGGAVAVK 289
Query: 280 TTI--------CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESG 330
CP G REAA K L+ V+++ G V + + +A + P +G
Sbjct: 290 VLTPGSHILEGCPEG---QREAASKALADLGVEVLTGARVLGLDPPLAASDAGEQSPAAG 346
Query: 331 ----AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 386
A+P A + S + A G ADLV+WT G+ P
Sbjct: 347 TSAAALPT--ACRVSYSLASDAGSAAGGAARSHLGADLVVWTAGTSPATREAR----AGF 400
Query: 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-----LPATAQVAFQQADFA 441
P+NARG ET+ TL V G +FALGD + S P LPATAQVAFQQAD+A
Sbjct: 401 PFPVNARGALETEPTLRVSGSDNVFALGDVAVAAPSPADPHHTQALPATAQVAFQQADYA 460
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGR-NDAAVSPSFV-------------------- 480
WN+WAAIN RPLLPF++Q+LG MM LG+ N A P V
Sbjct: 461 AWNVWAAINGRPLLPFKYQHLGSMMALGQTNAAVALPIPVPTALADAVRSSPLGPLLSAA 520
Query: 481 ------------------------------EGVTLDGPIGHSARKLAYLIRLPTDEHRLK 510
GVT++GP+ R+ AYL R PT+E RL
Sbjct: 521 GVRVGGAGPEAEAAVAGAAAAEGKSSAVGDSGVTVEGPLAQLMRRGAYLYRQPTNEQRLN 580
Query: 511 VGVSWL 516
V SW+
Sbjct: 581 VATSWV 586
>gi|357520139|ref|XP_003630358.1| hypothetical protein MTR_8g094720 [Medicago truncatula]
gi|355524380|gb|AET04834.1| hypothetical protein MTR_8g094720 [Medicago truncatula]
Length = 206
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/203 (64%), Positives = 148/203 (72%), Gaps = 6/203 (2%)
Query: 1 MASIALSASAALLPLKRNSGAWSKLFPFSSKSY-----LSFKTCRKNRFISFAASNSSGR 55
M+ IALSAS +L+ R + WS LFP + +S L + RK + F AS +G
Sbjct: 1 MSHIALSASPSLVAFHRGAKQWSTLFPSNWRSSGTNPSLFANSNRKRLQLRFFASGKNGG 60
Query: 56 NGDLV-VTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG +V SE A + WPD KKPR+CILGGGFGGLYTALRLESL W +D KPQ+ LV
Sbjct: 61 NGGVVDEISETVKAHANFVWPDNKKPRVCILGGGFGGLYTALRLESLEWSEDNKPQIALV 120
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQS+RFVFKPMLYELLSGEVD WEIAPRF+DLLANTGVQF KDRVK+L PSDHLGVNG
Sbjct: 121 DQSDRFVFKPMLYELLSGEVDEWEIAPRFSDLLANTGVQFLKDRVKVLQPSDHLGVNGSN 180
Query: 175 ACTHGGTVLLESGLIVEYDWLVL 197
A THGGTV LESGL +EYDW L
Sbjct: 181 ASTHGGTVHLESGLHIEYDWYKL 203
>gi|113477516|ref|YP_723577.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Trichodesmium erythraeum IMS101]
gi|110168564|gb|ABG53104.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Trichodesmium erythraeum IMS101]
Length = 405
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 169/451 (37%), Positives = 231/451 (51%), Gaps = 67/451 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P K +ICILG GFGGLYTAL L S K +V+L+DQ + VF P+LYE+++ E+
Sbjct: 12 PSNKITKICILGSGFGGLYTALYLNSFWGFKHKNCEVILIDQHDHLVFTPLLYEVITDEL 71
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WEIAP FA LL N + F +D ++ + LLE G + YD+
Sbjct: 72 QTWEIAPSFAKLLQNKKILFCQDTIQ------------NIDFKARKVKLLEQGSLA-YDY 118
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
LV+++G +P AE F TL DA +++KL LE N LIRV++VG G
Sbjct: 119 LVITVGVTN--GKLPTTAENVLTFRTLADAQILEKKLQTLENSN---QELIRVSIVGGGP 173
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
SGVELA +++RL +G ++ I I TP R+ A + L R V + L
Sbjct: 174 SGVELAGKIADRLGRRGEIRLIERGKEILKNFTPATRKNAQRALDKRNVLISL------- 226
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
E +V E I ++ ES I DLVLWT G++
Sbjct: 227 ------ETTVDTIEVDKITLWQSN-----------------ESVIILTDLVLWTAGTQ-- 261
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
+ N H N+RGQ ++TL + G+ +FALGD + + +G+ LPATAQVA
Sbjct: 262 VREWVKNLNCYH----NSRGQLICEQTLQLVGYSEVFALGDIAEILYPNGKKLPATAQVA 317
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
+QQA A NLWA +N++ PFR+ +LGEM+ LG N AAVS SF G++L G + R
Sbjct: 318 YQQASQAAKNLWAILNNKRPKPFRYLHLGEMITLGVNSAAVS-SF--GISLHGWLAALVR 374
Query: 495 KLAYLIRLPTDEH-------RLKVGVSWLTK 518
YL RLPT H RLK+ WL K
Sbjct: 375 LSVYLQRLPTFSHGFQVLCNRLKI---WLAK 402
>gi|302851785|ref|XP_002957415.1| hypothetical protein VOLCADRAFT_107672 [Volvox carteri f.
nagariensis]
gi|300257219|gb|EFJ41470.1| hypothetical protein VOLCADRAFT_107672 [Volvox carteri f.
nagariensis]
Length = 570
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 182/492 (36%), Positives = 241/492 (48%), Gaps = 85/492 (17%)
Query: 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGV 152
Y A RL+ L+W KKPQV LVDQS+RFVFKP+LYEL++G E+AP LLA V
Sbjct: 62 YAAFRLDQLMWPRGKKPQVTLVDQSDRFVFKPLLYELINGTATPEEVAPSLPQLLAPYPV 121
Query: 153 QFFKDRVKLLCPSDHLGVNGPMACTH--GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPG 210
+F + +V + P++ G H G V L G + YD+L+++LG++P VPG
Sbjct: 122 RFVQAQVTGVHPAEA----GATEVVHDGAGYVALSDGTSLPYDYLLVALGSQPDSRGVPG 177
Query: 211 AAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEK 270
E+A PF+T EDA RV L L + V +VG GY+GVELAA V ERL +
Sbjct: 178 VREWAVPFNTYEDAVRVKGTLDLLS----DSGAGGSVVIVGGGYAGVELAAVVGERLRGR 233
Query: 271 GI------VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 324
VQ + + I G R AA K L VQ+V G V + + ASV
Sbjct: 234 RGGGGAVSVQLLTPGSDILEGSPEGQRAAANKALQDLGVQVVTGVRVEALGPPDDNGASV 293
Query: 325 KQPESGAIPN---IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381
A+P ++ + + Q AD+V+WT GS P
Sbjct: 294 T-----ALPTACTVSYSPATATSAAAAVATAPEQQQQRLAADVVIWTAGSSPATREAR-- 346
Query: 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGD---------------SSALRDSSGRP 426
+ P NARG ET+ +L ++G +FALGD +S S+
Sbjct: 347 --QGFPFPTNARGAIETEPSLRIRGSDTMFALGDVAVAAAATDPPSSASASPSAQSTTEV 404
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-----PSFV- 480
LPATAQVAFQQAD+A WN+WAAIN RPLLPFR+Q+LG MM LG+ +AAV+ PS +
Sbjct: 405 LPATAQVAFQQADYAAWNIWAAINGRPLLPFRYQHLGSMMSLGQINAAVALPLELPSPLA 464
Query: 481 --------------EGV----------------------TLDGPIGHSARKLAYLIRLPT 504
GV TL+GP+ R+ AYL R PT
Sbjct: 465 DAVRSSPLGPLLGAAGVRLGDGRGGVSASAAAASPGGGVTLEGPLAALLRRGAYLYRQPT 524
Query: 505 DEHRLKVGVSWL 516
+E R+ V SWL
Sbjct: 525 NEQRINVAASWL 536
>gi|119485382|ref|ZP_01619710.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
gi|119457138|gb|EAW38264.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
Length = 425
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 236/465 (50%), Gaps = 64/465 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ RICILGGGF GLYTAL L+ L W KKP+++L+DQ +RF+F P LYEL++GE+
Sbjct: 10 RTSSRICILGGGFAGLYTALYLDRLSWSKGKKPEIILIDQKDRFLFTPFLYELITGELQT 69
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WE+AP F LL +T ++F + VK + +H + L+ G + YD+LV
Sbjct: 70 WEVAPSFQKLLMDTDIKFHQGTVKGIDLQEH-------------QIQLQDGDPLLYDYLV 116
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G D V G + + F TLEDA R+ KL LE S IRV ++G G +
Sbjct: 117 LAVGRRSYSDTVSGVPTYTYAFRTLEDAIRLQDKLHILEN---SIQSKIRVGIIGGGANA 173
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA + +RL E+G + I TI + ++ A + L +R VQ+
Sbjct: 174 VELAGKLVDRLGERGEISLIIRGKTILKNFSTSCQKVAYQSLISRGVQV----------- 222
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA--DLVLWTVGS--K 372
+FE V + ++ D QI+ DLV+ T+G+ +
Sbjct: 223 --KFETKVNALDEDSLTLTQGD-------------------QIYTTPIDLVIGTMGTQAR 261
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
L +E + N+RGQ T TL + +P +FALGD + +R+ +P TAQ
Sbjct: 262 EWLYFLECKH--------NSRGQLLTQPTLQLLDYPEVFALGDLADIRNRRDEQVPTTAQ 313
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 492
AFQQ + A NL AI +PL F + +LG+M+ LG + A VS SF G+ L G I
Sbjct: 314 AAFQQGNCAAKNLKLAIEKQPLRAFHYLHLGQMLTLGIHAATVS-SF--GIELTGFIACL 370
Query: 493 ARKLAY-LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 536
+RK Y L+R+PT HR +V L + +L L + LS
Sbjct: 371 SRKCVYILLRMPTISHRYEVVCYRLKHLGLKGFQILTQELGQGLS 415
>gi|303280049|ref|XP_003059317.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459153|gb|EEH56449.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 560
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 234/453 (51%), Gaps = 40/453 (8%)
Query: 93 YTALRLESLVWQDD----KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA 148
YTAL+L++L W +P+V LVD+++ FVFKPMLYEL++ + WE+AP FA+LLA
Sbjct: 93 YTALKLDALSWDATVGGPPRPRVTLVDRADDFVFKPMLYELVNETMRPWEVAPSFAELLA 152
Query: 149 NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV 208
T V+ K + G V L G V YD+LV ++GA V
Sbjct: 153 PTAVRLVK---GVAVDVREDDDAEGEGEGGAGVVTLMDGTTVPYDYLVCAVGANASDAGV 209
Query: 209 PGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIRVAVVGCGYSGVELAATVSER 266
GA +FA P + +DA R+ L ++ER ++ RVAVVG G +GVELA V+ER
Sbjct: 210 AGAKDFAIPLNDAKDASRLAGALRDIERAADKTEDEARRRVAVVGGGLAGVELAGVVAER 269
Query: 267 LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 326
V+ I G R AA +VL V + G V + + E
Sbjct: 270 TRGVATVELFTPSGGIMRGAPSGQRAAATRVLRDAGVVMREGARVVAVEACADVERVRAC 329
Query: 327 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 386
E+ + +D + +E E + D+V WTVG + + P P
Sbjct: 330 GEAATVTVETSDGATTTVTVETSDGATTTE----DFDVVAWTVGQRAVTPESWP------ 379
Query: 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALR---------------DSSGRP----L 427
P +++G+ T++TL V G +FALGD++ + D + P L
Sbjct: 380 -FPRDSKGRIVTEDTLRVVGRSNVFALGDAAVVASSSSSNPNDSNPNDADFASPPPSEAL 438
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
P+TAQVAFQQAD+A WN+W+A++ RPLLPF++Q+LG+MM LG+ DAAV+ V +DG
Sbjct: 439 PSTAQVAFQQADYAAWNVWSAMSSRPLLPFKYQHLGDMMTLGKTDAAVALPLNLAV-VDG 497
Query: 488 PIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSA 520
P + R+ AYL R+PT+EHR K+ W+ + A
Sbjct: 498 PAAAALRRAAYLYRMPTNEHRAKLAAEWIEQGA 530
>gi|308803224|ref|XP_003078925.1| putative NADH dehydrogenase (ISS) [Ostreococcus tauri]
gi|116057378|emb|CAL51805.1| putative NADH dehydrogenase (ISS) [Ostreococcus tauri]
Length = 453
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 171/449 (38%), Positives = 245/449 (54%), Gaps = 44/449 (9%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+ +LGGGFGGLYTALRLE L W KP+V++VD+ + F FKP+LYEL++ + E+
Sbjct: 13 PRVVVLGGGFGGLYTALRLERLDWTRTTKPEVVVVDRGDAFAFKPLLYELVNETMTRDEV 72
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGV--NGPMACTHGGTVLLESGLIVEYDWLVL 197
AP F +LL TGV+ + V+ P D L +G + GGT L G + YD+LVL
Sbjct: 73 APTFEELLRPTGVRHVRGTVRGFEP-DGLSETRDGTPCSSSGGTCTLADGTSLTYDYLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+LG V GA E A + EDA ++ L E + + SGV
Sbjct: 132 ALGTATNDGGVEGARERAIALNGAEDAMKISSALGEAAAAGRRARVAVVGGGL----SGV 187
Query: 258 ELAATVSERLEEK---GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
ELA+ V+ERL G V I + + G REAA +VL V +V G +R +
Sbjct: 188 ELASVVAERLNASPSGGSVDVITPNGRVMSSAPVGQREAATRVLEKAGVNVVSGRVLR-L 246
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
V + +A V S + + ++ + Y D+V WT+G +
Sbjct: 247 SDVNDIDA-VSTAASVRLADEIGEERDEVY------------------DIVCWTIGQRAE 287
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA----LRDSSGRPLPAT 430
P P + + +TD TL V GH R++A+GD+S+ + ++S LP+T
Sbjct: 288 TPKEWP-------VATTGARKIKTDATLRVNGHSRVYAVGDASSSSAEVMNASWNELPST 340
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTLDGPI 489
AQVAFQQAD+A WN+WA++N R LPFR+Q+LG+MM+LG DAAV+ P V +TL+GP
Sbjct: 341 AQVAFQQADYAAWNIWASMNGRTALPFRYQHLGDMMVLGELDAAVAFP--VGDITLEGPA 398
Query: 490 GHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
+ R+LAYL R+PTDE R+K+G W+ +
Sbjct: 399 AAALRRLAYLYRMPTDEQRMKIGSKWVQQ 427
>gi|440683992|ref|YP_007158787.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena cylindrica PCC 7122]
gi|428681111|gb|AFZ59877.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena cylindrica PCC 7122]
Length = 407
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 238/436 (54%), Gaps = 55/436 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L + ++ L+++ F+F P+LYE+++GE+ EIA
Sbjct: 21 RICILGGGFGGLYTALELGKIAQIRQPDYEITLIEKRAHFLFTPLLYEVVTGELHNGEIA 80
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + LL+++ QF++ ++ + + L V L++G I+ YD+LVL++G
Sbjct: 81 PTYKKLLSDSQAQFYQAEIQGVDLENQL-------------VNLQNGEILTYDYLVLAVG 127
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
E +LDVVPGA ++A F TL DA + +L LE N LIR+A+ G G +GVE+A
Sbjct: 128 KETRLDVVPGATKYARTFRTLADAEYLKNRLQFLEASNI---PLIRIAIAGAGPNGVEIA 184
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++RL+++G ++ I+ I T + G+R A+ + L R V++ L + I+
Sbjct: 185 CKLADRLKKRGEIRLIDRGNEILKTFSKGSRTASYRALVKRGVRIELDTNIEAIK----- 239
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
P++ + + + F+ DLVLWT G++ +E
Sbjct: 240 ------PDAIIVNHHGT-------------------THKFQTDLVLWTGGNQS----IEW 270
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440
N + N +GQ TL + G+P +F LGD + +RD G PATAQ AFQQA
Sbjct: 271 VKNL--NCQHNQQGQLIATPTLQLAGYPNVFVLGDLAEIRDIQGNESPATAQAAFQQAPC 328
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 500
A N+ A I R L PF + +LGEM+ LG +A V SF G+TLDG + R+ Y+
Sbjct: 329 AARNIRAKITGRKLKPFSYLHLGEMLTLGIKNAVVY-SF--GITLDGNLARIIRRGVYIQ 385
Query: 501 RLPTDEHRLKVGVSWL 516
RLPT +H+L+V W+
Sbjct: 386 RLPTLKHKLQVAKRWI 401
>gi|172038965|ref|YP_001805466.1| putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51142]
gi|354552748|ref|ZP_08972056.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
gi|171700419|gb|ACB53400.1| putative FAD-dependent pyridine nucleotide-disulphide
oxidoreductase [Cyanothece sp. ATCC 51142]
gi|353556070|gb|EHC25458.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
Length = 416
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 232/460 (50%), Gaps = 68/460 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
IC+LGGGF GLYTAL L + + ++ LV++++ F+F P+LYEL++GE+ WEIAP
Sbjct: 9 ICVLGGGFSGLYTALYLSNYPQVKLGQWKITLVERNDNFLFTPLLYELITGELQRWEIAP 68
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LLA T ++F + VK + + V L++ + YD+LVL LG
Sbjct: 69 TYQKLLAGTSIKFCQHIVKKIDLENR-------------QVKLDNDNSLSYDYLVLGLGT 115
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
+ + +PG A F TL D ++ K+ LE + +RVA++G G +GVEL+
Sbjct: 116 QNRWVDIPGLKTHALTFRTLRDLEQLQAKIHYLETLD---RKHLRVAIIGGGPNGVELSC 172
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR----V 317
+++RLE++ V I+ I + G R+A+ + L +R VQL L V I + +
Sbjct: 173 KLADRLEKRAEVLLIDRGNQILKGLSNGIRKASYRALGSRGVQLYLNTNVEEIEKTSITI 232
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLL 375
E S+ P D+V+W G SKPL+
Sbjct: 233 NHGEHSINVP----------------------------------VDMVIWVAGTESKPLI 258
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ + + G+ T+ L + +P +FALGD + + + + LP TAQVA+
Sbjct: 259 QSL--------NCQQTSSGRLLTNSRLQLIDYPEVFALGDLAQISNKK-KSLPTTAQVAY 309
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
QQA A N+ A I +PL F + +LG+M+ LGR A +S G+ ++G IG R+
Sbjct: 310 QQASCAAKNIAAIIERKPLKSFNYLHLGDMLTLGRRTAIISSY---GININGQIGGMLRR 366
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVL 535
LAY+ RLPT HRL+V +++ K + Q +T +L
Sbjct: 367 LAYIFRLPTMRHRLQVLRNFVQKIGLKISRFFQEIITNLL 406
>gi|416379428|ref|ZP_11683895.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
gi|357265906|gb|EHJ14611.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
Length = 416
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 233/461 (50%), Gaps = 60/461 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K IC+LGGGF GLYTAL L ++ LV++++ F+F P+LYEL++GE+
Sbjct: 4 KNSINICVLGGGFSGLYTALYLCYHPQVKSGDWKITLVERNDNFLFTPLLYELITGELQR 63
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + LLA T ++F + V + V LE+ + YD+LV
Sbjct: 64 WEIAPTYQKLLAGTSIKFCQHIVTKIDLEKR-------------RVALENDDSLSYDYLV 110
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L LG + +PG A F TL+D ++ K+ LE + +RVA++G G +G
Sbjct: 111 LGLGTKNYWADIPGLKNHALTFRTLQDLEKLQAKIHYLETLD---RKHLRVAIIGGGPNG 167
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VEL+ +++RLE++G + I+ I + G R+A+ + L +R+VQL L
Sbjct: 168 VELSCKLADRLEKEGGILLIDRGNHILKGFSKGVRKASYRALGSRRVQLYL--------- 218
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPL 374
N ++ + YI+ G ++ D+V+W G SK L
Sbjct: 219 -----------------NTNVEEIGENYII----LNHGEQTMNVPVDMVIWVAGTQSKQL 257
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
+ + + G+ + +L + HP +FALGD + + + + + LP TAQVA
Sbjct: 258 IQSLNCQQSN--------SGKLLVNPSLQLIDHPEVFALGDLAQISNKN-KSLPGTAQVA 308
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
+QQA + N+ A I +PL PF++ +LG+M+ LGR A +S G+ + G +G R
Sbjct: 309 YQQASYTANNIAAIIKGKPLKPFKYLHLGDMLTLGRRTAIISSY---GINISGQLGGIMR 365
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVL 535
+LAY+ RLPT HRL+V ++ K + +S +T +L
Sbjct: 366 RLAYIFRLPTMRHRLQVLRNFAQKIGLKIRIFFRSIVTTLL 406
>gi|428226736|ref|YP_007110833.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
gi|427986637|gb|AFY67781.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
Length = 429
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 229/442 (51%), Gaps = 68/442 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILG GFGGLYTAL L W +PQ++LV+ +F+F P+LYELL+GE++ W+IAP
Sbjct: 8 ICILGAGFGGLYTALALAQQRW-PGPRPQIVLVEPGTQFLFSPLLYELLTGELEPWQIAP 66
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
F LL T V F++ RV+ GV+ P V LE G + YD LVL++G
Sbjct: 67 SFQALLGETPVTFWQGRVQ--------GVDLPYR-----QVWLEDGRGITYDQLVLAVGQ 113
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
VPGAAE+A+ F LE+ R+ ++L ELE S +RVA+ G G SGVELA
Sbjct: 114 GTASAGVPGAAEYAYGFRRLEECDRLHQRLLELE---AAGRSPVRVAIAGAGPSGVELAG 170
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
+++RL ++G Q++L F R R + +F
Sbjct: 171 KLADRLGDRG--------------------------------QILL--FDRGDRLLKDFP 196
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE----SQIFEADLVLWTVGSKPLLPH 377
++++ + A+ + I E++P +E + DLV+WT G
Sbjct: 197 GALQRAAALALAQRRVRVSLQTSICEVRPDAVIVERHGQTHDIPVDLVVWTGGKA----- 251
Query: 378 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
++ + LP N +GQ T TL + +P +FALGD + + S +P TAQ A+
Sbjct: 252 ---SHDWVQALPCAKNDQGQVRTRPTLQLLDYPEVFALGDVADIGVSPRERVPDTAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
QQA A NL + I R L FRF+ LG+MM +G A V SF G+TL G + R+
Sbjct: 309 QQAPVAAHNLRSQIQGRSLRAFRFRPLGDMMTVGYQSAVVH-SF--GLTLTGRLAAVVRQ 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLT 517
AYL+RLPT HR +V SWL+
Sbjct: 366 WAYLLRLPTARHRGQVAWSWLS 387
>gi|126661163|ref|ZP_01732240.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
gi|126617536|gb|EAZ88328.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 235/450 (52%), Gaps = 69/450 (15%)
Query: 76 DKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
+ KKP IC+LGGGF GLYTAL L + + ++ LV++++ F+F P+LYEL++GE+
Sbjct: 2 NTKKPINICVLGGGFSGLYTALYLSNHPHVKSSQWKITLVERNDNFLFTPLLYELITGEL 61
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WEIAP + LLA T ++F + V+ + + V L++ + YD+
Sbjct: 62 QRWEIAPTYQKLLAGTSIKFCQHIVEKIDLENR-------------QVKLDNDDSLNYDY 108
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
LVL LG + + +PG +A F TL D ++ K++ LE + K L RVA++G G
Sbjct: 109 LVLGLGTQNRWVDIPGLKNYALTFRTLRDLEQLQAKINYLE--SLDKKHL-RVAIIGSGP 165
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVEL+ +++RLE++ V I+ I + G R+A+ + L +R+VQL L V+ I
Sbjct: 166 NGVELSCKLADRLEKQAEVLLIDRGNQILKGLSKGIRKASYRALGSRRVQLYLNTNVQEI 225
Query: 315 RR----VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+ + E ++ P ++V+W G
Sbjct: 226 NKNSITINYGEQTINVP----------------------------------VNMVIWVAG 251
Query: 371 --SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
SKPL+ + + + G+ T+ L + +P +FALGD + + + + P
Sbjct: 252 TQSKPLIKSL--------NCQQTSSGKLLTNSRLQLIEYPEVFALGDLAQISNKK-KSNP 302
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
ATAQVA+QQA A N+ A I +PL F + +LG+M+ LG+ A +S G+ ++G
Sbjct: 303 ATAQVAYQQASCAAKNIAAIIEGKPLKSFNYLHLGDMLTLGKRTAIISSY---GININGQ 359
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
IG R+LAY+ RLPT HRL+V +++ K
Sbjct: 360 IGGMLRRLAYIFRLPTMRHRLQVLRNFVQK 389
>gi|218441425|ref|YP_002379754.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7424]
gi|218174153|gb|ACK72886.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7424]
Length = 412
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 236/460 (51%), Gaps = 55/460 (11%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K +I ILGGGFGGLYTAL L K ++ LV+ + F+F P+LYEL++GE+
Sbjct: 3 KDYYQIVILGGGFGGLYTALYLSRHRLFQSGKCKITLVEPKDHFLFTPLLYELITGELQR 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + LLA+T ++ + VK + V LE+ + YD+LV
Sbjct: 63 WEIAPSYQKLLASTPIRLCQHSVKEINFKTR-------------QVYLENAQQLSYDYLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
+++G E + + G + +A F TLED + +L LE ++R+ V+G G +G
Sbjct: 110 VAVGTETRWADISGLSTYALTFRTLEDLEYLKGQLHLLE---ISDRQILRLGVIGGGANG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELA +++RL ++G V I I +PG R AA K LS R+V +
Sbjct: 167 VELACKLADRLGKRGEVILIERGKNILKGFSPGVRSAAWKALSLRRVNV----------- 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
E A+V+ E+ + + D+ + + DLV+W G++
Sbjct: 216 --ELNATVEAIEANQMTLVQYDQRNQ-----------------YPIDLVIWATGTQS--- 253
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
E + D N +G+ T TL + +P +FALGD + + SS + +PATAQ AFQ
Sbjct: 254 -REWVTDL--DCQHNHQGKLLTYPTLQLIDYPEVFALGDITEIHSSSQKSVPATAQAAFQ 310
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
QA A N+ A I +PL F + +LG+M+ LG+ A +S F + +DG +G R+L
Sbjct: 311 QASCAAKNIVALIQHKPLKVFHYHHLGDMLTLGQKSAIISSFF---LNIDGRLGDIIRRL 367
Query: 497 AYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 536
AY++RLPT HRL+V SW K I L + +T++L
Sbjct: 368 AYILRLPTPRHRLQVLRSWFIKLIIRVKRLFRWRITQLLQ 407
>gi|166367035|ref|YP_001659308.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
gi|166089408|dbj|BAG04116.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
Length = 326
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 202/377 (53%), Gaps = 63/377 (16%)
Query: 146 LLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205
+LANT V F + V + ++H + L++ + YD LV++LG + L
Sbjct: 1 MLANTPVDFQQGTVTAIDVNNH-------------KITLDNQKDICYDRLVIALGGQSSL 47
Query: 206 DVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSE 265
D +PGA A PF +LEDA R+ +L LE+ + K IRVA++G GYSGVELA ++E
Sbjct: 48 DFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDK---IRVAIIGGGYSGVELACKLAE 104
Query: 266 RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVK 325
RL E+G ++ I + I T NR+ A K L R V L + E +V
Sbjct: 105 RLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLETTV- 150
Query: 326 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNN 383
AD +D+ L+ + I + DL+LWTV + PLL
Sbjct: 151 -----------ADIQADRLSLDYKGQIDNIP-----VDLILWTVSPIASPLLA------- 187
Query: 384 RLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441
+LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 188 ---NLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQSDYC 244
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 501
WN+WA+ +D+P LPFR+Q LGEM+ LG ++AA+S G+ L GP+ H R+L YL R
Sbjct: 245 AWNIWASFHDKPALPFRYQPLGEMLTLGVDEAAISGL---GLELAGPLAHLTRRLVYLYR 301
Query: 502 LPTDEHRLKVGVSWLTK 518
LPT H++ V +W+T+
Sbjct: 302 LPTLNHQIAVAFNWITQ 318
>gi|434399461|ref|YP_007133465.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
gi|428270558|gb|AFZ36499.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
Length = 405
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 229/433 (52%), Gaps = 59/433 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICILGGGFGGLYTAL L + ++ LV+ + F+F P+LYELL+ E+ WEIA
Sbjct: 7 KICILGGGFGGLYTALYLSNSALVKSGDWEINLVEPKDNFLFTPLLYELLTEELQPWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + LL T + F++D+V + V L G ++ YD+LVLS+G
Sbjct: 67 PSYQKLLIGTKINFYQDQVSNINLKTR-------------QVQLNEGTLLTYDYLVLSIG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ KL +PGA A F +L DA +++ +L LE G+++ I++AV+G G +GVELA
Sbjct: 114 RKNKLLDIPGANTHALTFRSLLDAQKLNERLRILEAS--GRNT-IKIAVIGAGANGVELA 170
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+S+RL + V I+ I + G ++AA K + +++QL L
Sbjct: 171 CKISDRLLGRAQVLLIDRGQEILKNFSLGVKKAAFKAIQNKQIQLYL------------- 217
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
E +V+Q ++ I +K + DLVLWT G++ +
Sbjct: 218 ETNVQQIKAEQI-----------------TLVKNNQLITCPVDLVLWTTGTETI------ 254
Query: 381 PNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
++DL N+ GQ T TL + +P +FALGD + +R+S + +P TAQ A+QQA
Sbjct: 255 --QLINDLGCQQNSFGQLLTRPTLQLIDYPEVFALGDVADIRNSKTKLVPITAQAAYQQA 312
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
A NL AAI + L F + +LG+M+ LG+ + AV SF G+ L G + R+L Y
Sbjct: 313 SHAAKNLQAAIEGKKLKRFYYLHLGDMLTLGK-EVAVISSF--GINLSGSLAGKLRRLIY 369
Query: 499 LIRLPTDEHRLKV 511
+ RLPT HR +V
Sbjct: 370 IQRLPTLRHRWQV 382
>gi|299471064|emb|CBN78924.1| NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus]
Length = 543
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 169/523 (32%), Positives = 261/523 (49%), Gaps = 88/523 (16%)
Query: 28 FSSKSYLSFKTCRKNRF--ISFAASNSSGRNGDLV--VTSEDESA----SQTYTWPDKKK 79
F S S + +++R I + +GR ++ + E++ ++T+ +
Sbjct: 38 FGGSSTTSHEQQQQHRCLRIGVGSRGGAGRESSVLAGINGEEDDVDVVPARTFVSSSNQP 97
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
RIC+LGGGFGGLYTALRL+ + W+ ++P V LVD+ ++F F P+LYE G + E+
Sbjct: 98 ERICVLGGGFGGLYTALRLQKMPWRG-RRPVVTLVDKRDKFTFLPLLYEFAIGNAELDEV 156
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV--------- 190
AP F +LLA +GV F + C S ++ ++G G T G ++
Sbjct: 157 APTFRELLAGSGVSFVQG-----CVS-NIDLDGKGVTVAGATSDDLDGFMISDNADETRT 210
Query: 191 -EYDWLVLSLGAEPK--LDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR- 246
EYD LVL++GAEP +D VPGA E A PF ++ED+ RV + + +L+ +L+R
Sbjct: 211 LEYDKLVLAVGAEPASGIDKVPGARERAIPFYSIEDSYRVKQAIIKLK-------ALVRE 263
Query: 247 -----VAVVGCGYSGVELAATVSERLE--EKGIVQ---AINVETTICPTGTPGNREAALK 296
V VVG Y+GVEL+ ++ L KG+ + + + + TPGNREA L+
Sbjct: 264 KAVSRVVVVGGSYAGVELSCNLATELGGGRKGMGKVEVTLAAGSEVLSMATPGNREAGLR 323
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L+ V ++ G V ++ G G + K +D E
Sbjct: 324 RLTESGVHVMKGARVSEVKEGG-----------GVVLQQGEGKGTDSTFRE--------- 363
Query: 357 SQIFEADLVLWTVGSKP--LLPHVEPPNNRLHDLPLNARGQAETDETLCV-------KGH 407
+I ADL++WT GS+P LL + D+ +ARG+ E D L + G
Sbjct: 364 -EIM-ADLLVWTAGSQPSSLLDSL--------DVRKDARGRIEVDRRLRLIDAAGNDGGV 413
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
++ LGD +A+ G L AQVA QQ+D+ +N+WA R L FRF NLGEMM
Sbjct: 414 GDVYCLGDIAAV---EGLELGCNAQVALQQSDYVAYNIWADKERRKPLDFRFLNLGEMMN 470
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 510
LG D +++ + V L G AR+ Y +R+PT+ R++
Sbjct: 471 LGGLDGSLT-TLGGRVKLSGKAAGLARRAVYAVRMPTNPQRVR 512
>gi|428204162|ref|YP_007082751.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
gi|427981594|gb|AFY79194.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
Length = 414
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 236/452 (52%), Gaps = 62/452 (13%)
Query: 76 DKKKP------RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
DK KP RICILGGGFGGLYTAL L W K +++LV+Q++RF+F P+LYEL
Sbjct: 3 DKVKPTIANPIRICILGGGFGGLYTALYLSRFAWVRAGKCKMILVEQNDRFLFTPLLYEL 62
Query: 130 LSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
++ E+ WEIAP + LL T + F++ ++ + V+L+ G+
Sbjct: 63 ITEELQPWEIAPSYQKLLGGTEIAFYQQTIRDVDLKTR-------------QVVLDDGVE 109
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAV 249
+ YD+LVL++G + + +PG A F TL D R++ +L LE + + +R+A
Sbjct: 110 LAYDYLVLAVGTQNRWANIPGVQTHALTFRTLADVERLEARLKILEASDRQR---LRLAA 166
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
+G G +GVELA +++RL +G V I I + G R+AA + L +RK++
Sbjct: 167 IGGGANGVELACKLADRLGRRGQVHLIERGEEILKNFSSGVRKAAYRALRSRKIK----- 221
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
I R+ E A I AD + ++ + + DLVLWT
Sbjct: 222 ----IDRLTEVTA------------IEADSMT---------VVRDGKIVVLPVDLVLWTA 256
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G++ RL D P + RG+ TL + +P +FALGD + + + S +P+PA
Sbjct: 257 GTQ-----ARDWIARL-DCPKSDRGKLLIYPTLQLVDYPEVFALGDLADIGNGS-QPVPA 309
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 489
TAQ A+QQA A N+ A + + L PF + +LG+M+ LG+ A VS S + ++G
Sbjct: 310 TAQAAYQQASRAAKNIAATLQGKRLQPFCYLHLGDMLTLGKGAAVVSNSL---LNIEGKP 366
Query: 490 GHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
+ R+L Y+ RLPT HRL+V L K +
Sbjct: 367 AAAIRRLVYIQRLPTLRHRLQVFKHLLVKVVL 398
>gi|428773221|ref|YP_007165009.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
gi|428687500|gb|AFZ47360.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
Length = 388
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 216/437 (49%), Gaps = 61/437 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEV 134
KK+ R+CI+GGGFGGLYTA+ L L DKK +++L+DQ+ F+F P+LYE ++ E+
Sbjct: 4 KKRHRVCIIGGGFGGLYTAIELNKL----DKKRSLEIILIDQNSHFLFTPLLYEAITEEI 59
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WEIAP F LL T + F +V +N + E + YD+
Sbjct: 60 THWEIAPSFDLLLRKTAITFINKKV----------INIDFD---NQQIFYEDQDSINYDY 106
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
LVL++G + V GA E+A F TL+D R++ + +L N ++ V VVG G
Sbjct: 107 LVLAVGQKSYF-AVEGAKEYAHSFKTLKDVFRLEHTMEKLA--NIPQNKF-NVTVVGAGA 162
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVE+A ++++L++K V I+ I G ++ A K L R +Q+ L
Sbjct: 163 NGVEIAGKITDKLKDKAQVILIDRGIEILKNFPRGMQQYATKSLIKRNIQIYL------- 215
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
E ++ + E I + N D I + +L LWTVG+
Sbjct: 216 ------ETTINKVEEHKI-HFTDHLNQDYEI---------------DFNLTLWTVGN--- 250
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
+ P +L + +G+ T T + +FA+GD +L D G+ +PA AQ A
Sbjct: 251 ---MTPKWINQLNLSQDEQGKILTKPTFQLWNFENVFAIGDLVSLIDKQGKKVPAKAQAA 307
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
FQ + N+ A + L F +++LG+MM +G N+ +S V G+T+ G I R
Sbjct: 308 FQGSHILAHNIMALSQHKKLKLFSYRHLGDMMTVGINNDIIS---VAGITMTGFIASIIR 364
Query: 495 KLAYLIRLPTDEHRLKV 511
K AY+ R+PT H L+V
Sbjct: 365 KWAYIFRMPTFNHCLEV 381
>gi|87301401|ref|ZP_01084242.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. WH 5701]
gi|87284369|gb|EAQ76322.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. WH 5701]
Length = 413
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 225/456 (49%), Gaps = 56/456 (12%)
Query: 64 EDESASQTYTWPDKKKP--RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
E+ S S T P P + I GGGFGGLYTAL L S P +LLV+ +RF+
Sbjct: 2 EEPSRSPANTPPQASGPIRPVLIAGGGFGGLYTALALAS----QRHHPPILLVEPQQRFL 57
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
F P+LYELLS E+ WE+APR+ LLA+ GV + +DR+ + S G
Sbjct: 58 FLPLLYELLSEELRGWEVAPRYDTLLASRGVAWLQDRISRIDAS-------------AGC 104
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK 241
V E G + Y LV++ G+ +PG E A PF +L D + + L
Sbjct: 105 VYTEQGRQLAYSRLVIATGSRGTSYGIPGVEELAIPFRSLADVEHLQELVQHLRSH---P 161
Query: 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR 301
L R+A+VG G SGVELA +++ L+ +++ I T + P NRE A L R
Sbjct: 162 RPLQRLALVGAGPSGVELACKLADLLQGSTVIELIEQGTDLLPQARAFNREQARSALLRR 221
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
++L R RV E + L L +G +
Sbjct: 222 DIRL------RTHTRVLALEPG-------------------RLELSLTAGGEGSSRETLP 256
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
D V+WT G P +EP + L+ RG+ + TL +K P +FA+GD + + D
Sbjct: 257 VDGVIWTAGVTVAPPPIEPAAS------LDDRGRLLCESTLELKQTPGVFAIGDVAHVAD 310
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+ G PL ATAQVAFQQAD NL ++ L PFR+++LGEM+ LG +A+++
Sbjct: 311 ADGAPLAATAQVAFQQADCLAENLLRSLEGESLQPFRWKDLGEMISLGIGEASLTGL--- 367
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
G+TL GP + R+L YL RLP H+L+V WL+
Sbjct: 368 GLTLAGPAAYRIRQLTYLSRLPGLPHQLRVAAGWLS 403
>gi|425439935|ref|ZP_18820247.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9717]
gi|389719735|emb|CCH96475.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9717]
Length = 420
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 62/463 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKNHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTKVNLKTQKASNIDLNNH-------------RVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + +PG A++ F +LED ++ + ELE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHELETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKVADRLGKKGKVHLVEKNEEILQNFPKSVRVASYRSLLAKNVSLYLN------- 218
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+K+ + +I + N ++ DL+LWT G++
Sbjct: 219 ------TGLKEVAANSITVFKDNTN-----------------EVIPIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPSK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + L P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASVVAKNISAVIRKKSLKPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
Y++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 366 FVYILRLPSKRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|425465950|ref|ZP_18845253.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
gi|389831710|emb|CCI25303.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
Length = 420
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 62/463 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKNHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKTQKASNIDLNNH-------------RVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + +PG A++ F +LED ++ + ELE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHELETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKVADRLGKKGKVHLVEKNEEILQNFPKSVRVASYRSLLAKNVSLYLN------- 218
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+K+ + +I + N ++ DL+LWT G++
Sbjct: 219 ------TGLKEVAANSITVFKDNTN-----------------EVIPIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPSK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + L P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASVVAKNISAVIRKKSLKPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
Y++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 366 FVYILRLPSKRHQLKVFRHWAKK------ILLRLRYSQVLSNT 402
>gi|159902632|ref|YP_001549976.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9211]
gi|159887808|gb|ABX08022.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9211]
Length = 392
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/435 (32%), Positives = 217/435 (49%), Gaps = 61/435 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGGF GL TAL L +D + ++LV+ RFVF P+LYELLSGEV WEIAP
Sbjct: 11 VVLIGGGFAGLTTALALS----RDRPRCPIILVEPRPRFVFIPLLYELLSGEVRLWEIAP 66
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L+A G+ ++ VK + L V+ SG ++Y LV++ G+
Sbjct: 67 SLRNLIAGKGIIVIQEYVKKMDIDRKL-------------VITSSGKAIDYSQLVIATGS 113
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
+P +PGA++ A F+ +ED + +S L+ + K SL+ +VG G +GVELA
Sbjct: 114 KPDFLGIPGASDHALMFNQIEDVQILKDLISRLKNCSSEKKSLV---IVGAGSAGVELAC 170
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
V++ +E + + I + P G N+E L R+V++ L
Sbjct: 171 KVADLVENQVKIHLIESAERVLPKGQSFNQEQVELALKKRRVEIHL-------------- 216
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381
++ + AD + L+ + S I + LV WT G KP+LP PP
Sbjct: 217 -------QTSVTAVTADS------IHLKTMNEHALSSITHSGLV-WTAGVKPVLPLGMPP 262
Query: 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441
N L G+ D +L V G IFA+GD + D+ +P TAQVA QQ + A
Sbjct: 263 ENLL-------LGRISIDSSLRVNGSQDIFAIGDIAFNADNPWKP---TAQVAIQQGETA 312
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 501
N+ A RPL PF F++LGEM+ LG DA ++ G+T+ GP+ R++AYL +
Sbjct: 313 AKNIVAIRERRPLEPFLFRDLGEMLSLGIGDATITGL---GMTMSGPLAFQLRRMAYLSK 369
Query: 502 LPTDEHRLKVGVSWL 516
LP ++ +WL
Sbjct: 370 LPRLSLGIRSASAWL 384
>gi|425472700|ref|ZP_18851541.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
gi|389881226|emb|CCI38238.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
Length = 410
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 232/461 (50%), Gaps = 62/461 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKTQKASNIDLNNH-------------QVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + +PG A++ F +LED R+ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVERLQTAIHDLETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKVADRLGKKGKVHLVERNEEILQNFPKSVRVASYRSLLAKNVSLYLN------- 218
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+K+ + +I +KN ++ DL+LWT G++
Sbjct: 219 ------TGLKEVAANSITVFKDNKN-----------------EVIPIDLLLWTAGTE--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDIAEIYPSK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASVVAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 536
Y++RLP H+LKV W K LL+ ++VLS
Sbjct: 366 FVYILRLPGKRHQLKVFQHWAKK------ILLRLRYSQVLS 400
>gi|425453794|ref|ZP_18833547.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
gi|389800267|emb|CCI20360.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
Length = 420
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 236/463 (50%), Gaps = 62/463 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKPQKARNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + +PG A++ F +LED ++ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHDLETQ--GKSS-IDLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVSLYLN------- 218
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+K+ + ++ +KN ++ DL+LWT G++
Sbjct: 219 ------TGLKEVAANSMTVFKDNKN-----------------EVIPIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A NL A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASVVAKNLSAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
Y++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 366 FVYILRLPSKRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|194477113|ref|YP_002049292.1| putative NADH dehydrogenase, transport associated [Paulinella
chromatophora]
gi|171192120|gb|ACB43082.1| putative NADH dehydrogenase, transport associated [Paulinella
chromatophora]
Length = 394
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 142/431 (32%), Positives = 208/431 (48%), Gaps = 60/431 (13%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
LYTAL L S + P +LL++ ERF+F P+LYELLSGE+ WE+APR+ LLA
Sbjct: 21 LYTALALSS----NLNYPPILLIEPKERFIFFPLLYELLSGELKIWEVAPRYTKLLAGKK 76
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
+ + +D V + L V+ SG ++ LV++ G +PG
Sbjct: 77 IAWLQDTVTSIDRMKKL-------------VITASGQRQYFEQLVIATGTHLNSFGIPGV 123
Query: 212 AEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271
E+A F +L D R+ + L +++ +D R+ VVG G +GVELA +++ L
Sbjct: 124 REYAMGFHSLSDVERLQKLLRLMKK---CEDIEQRLVVVGAGPAGVELACKIADLLIGTA 180
Query: 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 331
IV+ I P+ NRE A L + V L L V
Sbjct: 181 IVELIEQSDQPLPSARSFNREQAKLALLKKGVHLRLNTKV-------------------- 220
Query: 332 IPNIAADKNSDKYILELQPAIKGLE--SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389
+ N + +L KG E +I + + +WT G+ P P + PP +
Sbjct: 221 -----LEVNKNNIVL----LAKGSERSEEILKVNGTIWTAGTTPNYPTILPPPD------ 265
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449
+N RGQ L + G+ IFA+GD + + S LPATAQVAFQQA+ N+
Sbjct: 266 INVRGQLSCGPDLQLNGYQDIFAIGDVALILSSEEFSLPATAQVAFQQAELLSTNILHIR 325
Query: 450 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
N L F +++LGEM+ LG DA ++ G+TL GP AR+LAYL RLP+ H+L
Sbjct: 326 NGDQLQAFNWEDLGEMISLGIGDATITGM---GLTLAGPSAFHARRLAYLTRLPSLSHQL 382
Query: 510 KVGVSWLTKSA 520
+V WL ++
Sbjct: 383 RVATGWLLSNS 393
>gi|254432218|ref|ZP_05045921.1| NADH dehydrogenase protein, putative [Cyanobium sp. PCC 7001]
gi|197626671|gb|EDY39230.1| NADH dehydrogenase protein, putative [Cyanobium sp. PCC 7001]
Length = 406
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 159/428 (37%), Positives = 216/428 (50%), Gaps = 60/428 (14%)
Query: 89 FGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA 148
F GLYTAL L + + P VLL++ ++RF+F P+LYELLSGE+ WEIAPR+ LLA
Sbjct: 34 FAGLYTALALA----EQRQPPPVLLIEPNDRFLFLPLLYELLSGELRRWEIAPRYDALLA 89
Query: 149 NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV 208
G+ + +DRV H+ T GG L + LVLS G +
Sbjct: 90 GKGIAWLRDRVT------HIDATARSVSTEGGRTL-------GFSQLVLSTGGSTNSFGI 136
Query: 209 PGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLE 268
PG E A F TL D R+ + + EL + L R+A+VG G SGVELA +++ L+
Sbjct: 137 PGVREHALEFRTLADVERLHQLVGELRSQQL---PLQRLAIVGAGPSGVELACKLADLLQ 193
Query: 269 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 328
+V+ I P NR+ AL+ L AR V+L R RV E
Sbjct: 194 GAALVELIEQGPEALPQARAFNRDQALRALQARDVRL------RTRTRVQE--------- 238
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
+ AD+ L+LQ G ES A V+WT G P + P ++
Sbjct: 239 ------VGADQ------LDLQ-GPGGAESLPVRA--VIWTAGISFQPPAITP------EV 277
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
RG+ + +L ++G +FA GD +AL G PLPATAQVAFQQAD NL +
Sbjct: 278 RSEGRGRLSCEPSLRLRGFSHLFAAGDIAALESEDG-PLPATAQVAFQQADCLAANLLRS 336
Query: 449 INDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 508
PL PFRF++LGEM+ LG +A++ G+TL G + R+LAYL RLP H+
Sbjct: 337 EAGEPLEPFRFKDLGEMVSLGIGEASLVGG---GLTLAGAAAYQLRRLAYLTRLPRRTHQ 393
Query: 509 LKVGVSWL 516
L+V WL
Sbjct: 394 LRVAAGWL 401
>gi|166368981|ref|YP_001661254.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
gi|166091354|dbj|BAG06062.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
Length = 420
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 234/463 (50%), Gaps = 62/463 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTKVNLKTQKASNIDLNNH-------------RVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + +PG A++ F +LED ++ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHDLETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++ L +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKVADGLGKKGKVHLVEKNEEILQNFPKSVRVASYRSLLAKNVSLYL-------- 217
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+K+ + +I + N ++ DL+LWT G++
Sbjct: 218 -----NTGLKEVAANSITVFKDNTN-----------------EVIPIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPSK-QVVPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + L P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASVVAKNISAVIRKKSLKPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
Y++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 366 FVYILRLPSKRHQLKVFRHWAKK------ILLRLRYSQVLSNT 402
>gi|148241488|ref|YP_001226645.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
RCC307]
gi|147849798|emb|CAK27292.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
RCC307]
Length = 376
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 216/436 (49%), Gaps = 68/436 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I I+GGGF GLYTAL L + P +LLV+ +RFVF P LYE LSGE+ W++AP
Sbjct: 5 IVIVGGGFAGLYTALELA----RRPGHPPLLLVEPRDRFVFLPFLYERLSGELPLWQMAP 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
R+ LLA G+ + +DRV + P +C V+LESG + Y LV++ GA
Sbjct: 61 RYDALLAGHGIGWQRDRVTAVEPG---------SC----QVVLESGQRLGYSQLVIATGA 107
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
+P +PG E A F +LED + +L + RN RVA+VG G SGVELA
Sbjct: 108 KPDSFGIPGVEEHALRFHSLEDVEALQAQLPAI--RN-------RVAIVGAGPSGVELAC 158
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
+++ L + V+ I P NR A L R V+L RC +
Sbjct: 159 KLADLLRGQANVELIERGERCLPQAKAFNRSQAELALQQRDVRL------RC-------Q 205
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381
VK + G L LQ A +S D V+WT G + LP
Sbjct: 206 CGVKAVQPGE--------------LTLQDAQG--QSSSLAVDAVVWTAGQRTALPG---- 245
Query: 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441
L + RG+ + +L ++ PRIF+LGD++A+ LPATAQVAFQQ+
Sbjct: 246 ----GTLATDGRGRLRCNASLQLESDPRIFSLGDTAAIPHDP--ELPATAQVAFQQSQLL 299
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 501
NL A ++PL F++++LGEM+ LG DA ++ G+TL G + R+ YL R
Sbjct: 300 ARNLLLARENQPLEEFKWKDLGEMLSLGVGDATLTGM---GLTLAGSSAYQLRRWTYLTR 356
Query: 502 LPTDEHRLKVGVSWLT 517
LP L+V WL+
Sbjct: 357 LPGCRLPLQVAAGWLS 372
>gi|307150141|ref|YP_003885525.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306980369|gb|ADN12250.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 411
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 231/460 (50%), Gaps = 56/460 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K +IC++GGGFGGLYTAL L Q++LV+ + F+F P+LYEL++GE+ W
Sbjct: 3 KCYKICLIGGGFGGLYTALYLSRFRVFKAGLCQIILVEPKDHFLFTPLLYELITGELQRW 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP + LLA T +Q+ + VK + + V LE+ + YD+LVL
Sbjct: 63 EIAPSYQKLLAFTQIQWCQQAVKSVDFKTRV-------------VQLENEQQLSYDYLVL 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+ G++ + VPG + A F TLED R+ ++ LE + LIR V+G G +GV
Sbjct: 110 AAGSQNRFLDVPGLSTHALTFRTLEDVERLQGEIHLLEA---SQKPLIRATVIGGGPNGV 166
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA +++RL ++G V I I + G R+AA + L ++V++ L V I
Sbjct: 167 ELACKLADRLGKRGQVSLIERGENILKGFSQGVRKAAWRSLVLKRVKVELNTTVEAI--- 223
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
A ++ KN K L + DLV+W G++
Sbjct: 224 -------------AADSLTLLKNDQKVQL--------------QRDLVIWAAGTQV---- 252
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
R D NA+G+ TL + +P +FALGD + R+ + PATAQ AFQQ
Sbjct: 253 --SEWVRHLDCQKNAQGKLLIYPTLQLIDYPEVFALGDLADSREGK-KSHPATAQAAFQQ 309
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
A N+ A I ++PL F + +LG+M+ LGR A +S SF+ + ++G + R+L
Sbjct: 310 ASCLAKNIAAMIENKPLKAFHYHHLGDMLTLGRKSAIIS-SFL--LNVNGRLADILRRLV 366
Query: 498 YLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 537
Y++RLPT HR +V SW K + + T++L
Sbjct: 367 YILRLPTMRHRRQVLQSWFFKLTVKCKQFFRWHFTRILEQ 406
>gi|218244923|ref|YP_002370294.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8801]
gi|218165401|gb|ACK64138.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8801]
Length = 413
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 241/465 (51%), Gaps = 60/465 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L W Q+ LV++++ F+F P+LYEL++GE+
Sbjct: 3 NKTPIKICILGGGFGGLYTALYLTRSGWVKSGNCQITLVERNDNFLFTPLLYELITGELQ 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LLA T ++ ++ VK + + V L +G + YD+L
Sbjct: 63 RWEIAPTYQKLLAKTPIKLCQNTVKDVNFKER-------------QVSLGNGDRLWYDYL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + + +PG A F TL D R+ +L LE K+S R+AV+G G +
Sbjct: 110 VLAVGRQNRWVDIPGLKTHALTFRTLADVERLQAQLHLLETS--PKESF-RLAVIGGGPN 166
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA +++R+ ++G + I + + G + AA K LS R++Q+ L
Sbjct: 167 GVELACKLADRVGKRGEIVLIERGNQLLKGFSEGVKIAAAKALSHRQIQVYL-------- 218
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
++VK ++ +I I DK I + V+W G+
Sbjct: 219 -----NSNVKAIQADSIVLIHQDKEI-----------------ILSVNQVIWVAGT---- 252
Query: 376 PHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
N + LP+ N +G+ T +L + +P +FALGD + + D S + +PATAQ
Sbjct: 253 ----ASRNWVKSLPIQQNEQGKILTLPSLQLVDYPEVFALGDIADI-DKSQQWIPATAQA 307
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A+QQA N+ AA+ + L FR+ +LG+M+ LG+ A VS SF ++G +
Sbjct: 308 AYQQASCTAKNIVAALEGKKLSAFRYFHLGDMLTLGQGAAIVS-SFC--FNIEGYLASII 364
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
R+LAY+ RLPT HRL+V + L K+ + + L K+LS +
Sbjct: 365 RRLAYIFRLPTLRHRLQVLRNLLQKALLKIRRFFRWKLIKILSQN 409
>gi|257057948|ref|YP_003135836.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8802]
gi|256588114|gb|ACU99000.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8802]
Length = 413
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 241/465 (51%), Gaps = 60/465 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L W Q+ LV++++ F+F P+LYEL++GE+
Sbjct: 3 NKTPIKICILGGGFGGLYTALYLTRSGWVKSGNCQITLVERNDNFLFTPLLYELITGELQ 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LLA T ++ ++ VK + + V L +G + YD+L
Sbjct: 63 RWEIAPTYQKLLAKTPIKLCQNTVKDVNFKER-------------QVSLGNGDRLWYDYL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + + +PG A F TL D R+ +L LE K+S R+AV+G G +
Sbjct: 110 VLAVGTQNRWVDIPGLKTHALTFRTLADVERLQAQLHLLETS--PKESF-RLAVIGGGPN 166
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA +++R+ ++G + I + + G + AA K LS R++Q+ L
Sbjct: 167 GVELACKLADRVGKRGEIVLIERGNQLLKGFSEGVKIAAAKALSHRQIQVYL-------- 218
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
++VK ++ +I I DK I + V+W G+
Sbjct: 219 -----NSNVKAIQADSIVLIHQDKEI-----------------ILSVNQVIWVAGT---- 252
Query: 376 PHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
N + LP+ N +G+ T +L + +P +FALGD + + + S + +PATAQ
Sbjct: 253 ----ASRNWVKSLPIQQNEQGKILTLPSLQLIDYPEVFALGDIADI-NKSQQWIPATAQA 307
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A+QQA N+ AA+ + L FR+ +LG+M+ LG+ A VS SF ++G +
Sbjct: 308 AYQQASCTAKNIVAALEGKKLSAFRYFHLGDMLTLGQGAAIVS-SFC--FNIEGYLASII 364
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
R+LAY+ RLPT HRL+V + L K+ + + L K+LS +
Sbjct: 365 RRLAYIFRLPTLRHRLQVLRNLLQKALLKIRRFFRWKLIKILSQN 409
>gi|317968018|ref|ZP_07969408.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CB0205]
Length = 383
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 152/436 (34%), Positives = 218/436 (50%), Gaps = 57/436 (13%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
++GGGFGGL TAL+L + + P VLL++ E F+F P+LYELLSGE+ WEIAPR+
Sbjct: 2 VIGGGFGGLNTALQLAA----SGEHPSVLLLEPREHFLFLPLLYELLSGELKRWEIAPRY 57
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
+LLA +GV + ++R + S T+ + G + Y V++ G +
Sbjct: 58 RELLAGSGVVWIQERASRIDRSRR-------------TITTDRGRELPYSQAVIASGGQL 104
Query: 204 KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATV 263
+ +PG E A F LED ++ ++ L+ + + L R+ +VG G SGVELA +
Sbjct: 105 ETYGIPGVREHALGFRDLEDVEQIQGWIARLKTK---QSPLQRIGIVGAGASGVELACKL 161
Query: 264 SERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 323
++ LE I++ + + P NRE A K L R ++L L V AS
Sbjct: 162 ADLLEGSAILELVEQGPELLPIAKAFNREQARKALQQRDIRLRLNTRV----------AS 211
Query: 324 VKQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPN 382
V D L+LQ G S + D V+WT G +P ++PP
Sbjct: 212 V-----------------DATGLQLQRLGDGTNSTEALRCDGVIWTAGLAASVPELQPP- 253
Query: 383 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 442
LPL+ RG+ + +L V+G +F LGD++A DS G PA AQVA+QQA
Sbjct: 254 -----LPLDPRGRLKCAPSLQVEGSEDLFVLGDAAACPDSCGALYPANAQVAYQQASCIA 308
Query: 443 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 502
NL PL F + +LGEMM LG A+++ GVTL GP R+LAYL R+
Sbjct: 309 RNLQRLRLGAPLEDFAWNDLGEMMGLGVGQASLTGM---GVTLAGPAAFQLRRLAYLARM 365
Query: 503 PTDEHRLKVGVSWLTK 518
P +LKV WL
Sbjct: 366 PGLPQQLKVAGGWLAN 381
>gi|425446930|ref|ZP_18826926.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9443]
gi|389732622|emb|CCI03469.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9443]
Length = 420
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 234/463 (50%), Gaps = 62/463 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKPQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + + G A++ F +LED ++ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAILGLADYGLTFRSLEDVEKLQTAIHDLETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA +++RL +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKLADRLGKKGKVHLVERNEEILQNFPKSVRIASYRSLLAKNVSLYLN------- 218
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+K+ S ++ +KN ++ DL+LWT G++
Sbjct: 219 ------TGLKEVMSNSMTVFKDNKN-----------------EVIPIDLLLWTAGTE--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPSK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASVVAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
Y++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 366 FVYILRLPSQRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|425436758|ref|ZP_18817191.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9432]
gi|389678480|emb|CCH92668.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9432]
Length = 420
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 233/463 (50%), Gaps = 62/463 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + + G A++ F +LED R+ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAILGLADYGLTFRSLEDVERLQTAIHDLETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVNLYL-------- 217
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+ + +AA+ + K ++ DL+LWT G++
Sbjct: 218 -------------NTGLKEVAANSMT---------VFKDNTNEFIPIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
Y++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 366 FVYILRLPSQRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|440756870|ref|ZP_20936070.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa TAIHU98]
gi|440172899|gb|ELP52383.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa TAIHU98]
Length = 420
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 233/463 (50%), Gaps = 62/463 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + + G A++ F +LED R+ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNRWPAILGLADYGLTFRSLEDVERLQTAIHDLETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L
Sbjct: 166 GVELACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVSLYL-------- 217
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+ + +AA+ + K ++ DL+LWT G++
Sbjct: 218 -------------NTGLKEVAANSMT---------VFKDNTNEFIPIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 538
Y++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 366 FVYILRLPSQRHQLKVFQHWAKK------ILLRFRYSQVLSNT 402
>gi|284929139|ref|YP_003421661.1| NADH dehydrogenase, FAD-containing subunit [cyanobacterium UCYN-A]
gi|284809598|gb|ADB95303.1| NADH dehydrogenase, FAD-containing subunit [cyanobacterium UCYN-A]
Length = 338
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 194/388 (50%), Gaps = 59/388 (15%)
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
++ EI F LLANT + F + V + + + G + L YD
Sbjct: 1 MEEQEITFPFKKLLANTNISFQQGLV------TEIDIKKQIIQLEGKSNLY-------YD 47
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCG 253
LVL+ G GA E A PF T+ DA + + L LE+R K IR+A+VG G
Sbjct: 48 KLVLATGVSSSFGSCDGAQENAIPFRTVNDAYLIKKTLLSLEKRQTEK---IRIAIVGGG 104
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
SGVE+A +S+ L++K ++ I I + + + A K L +R + FV
Sbjct: 105 SSGVEIACKLSDLLQKKARIRLIEKNKNILKSYSYFIQNVANKELKSRHI------FV-- 156
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
+ E V Q S ++ +KN +K I DLV+WT+G+KP
Sbjct: 157 -----DLETKVTQVSSNSLS--LLNKNRNKTI---------------PTDLVIWTIGTKP 194
Query: 374 LLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431
L ++ LPL N+RG + L + HP IFA+GD + +++ L TA
Sbjct: 195 L--------EIINKLPLLKNSRGSLIINSKLQIINHPEIFAIGDIAEYQENLENKLCPTA 246
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
Q AFQQAD+ WN+WA+I + LL F +Q LGEM++LG +AAVS G+ ++G + +
Sbjct: 247 QTAFQQADYCAWNIWASIVNNSLLSFSYQPLGEMIVLGNKNAAVSSL---GIQIEGQLAY 303
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWLTKS 519
AR+L YL RLPT + +L +G +++ KS
Sbjct: 304 IARRLIYLHRLPTQKKQLIIGTNFILKS 331
>gi|425461659|ref|ZP_18841133.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9808]
gi|389825444|emb|CCI24764.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9808]
Length = 420
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 222/443 (50%), Gaps = 56/443 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALNLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + G A++ F +LED ++ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNCWPDILGLADYGLTFRSLEDVEKLQTAIHDLETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L +R
Sbjct: 166 GVELACKVADRLGKKGKVHLVERNEEILQNFPKSVRVASYRSLLAKNVSLYLNTGLR--- 222
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
E A N++++I DL+LWT G++
Sbjct: 223 ------------EVAANSITVFKDNTNEFI---------------PIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTK 518
Y++RLP+ H+LKV W K
Sbjct: 366 FVYILRLPSQRHQLKVFQHWAKK 388
>gi|33863892|ref|NP_895452.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9313]
gi|33635475|emb|CAE21800.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9313]
Length = 389
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 202/410 (49%), Gaps = 57/410 (13%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+P ++L++ +RFVF P+LYELLSGE+ AWE+AP + LL+ G+ +DRV +
Sbjct: 33 RPPIVLIEPRQRFVFLPLLYELLSGELQAWEVAPPYHSLLSQRGIALLEDRVDSI----- 87
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
T TV SGL + Y LVLS G+ P +PG + A F L D +
Sbjct: 88 --------DTKAKTVTTSSGLKLNYAQLVLSTGSTPTDFDIPGVRKHALMFHHLNDVDVL 139
Query: 228 DRKLSELE-RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG 286
+++ EL+ RRN +D + +VG G +GVELA +++ LE + I + + P+
Sbjct: 140 RQRIKELQLRRNPRQD----LVIVGAGPTGVELACKLADLLEGAAQLHLIELGERVLPSA 195
Query: 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 346
N+E A + LS R V + L VR I + E KQ E
Sbjct: 196 KAFNQEQAERALSERGVHVHLLTQVRAI-STDQVELLSKQKE------------------ 236
Query: 347 ELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 406
PAI S I + LV WT G++P++P + P D L + D L V G
Sbjct: 237 ---PAIS---SAITHSGLV-WTAGTRPVIPALSP------DFVLT-EARLPIDSCLQVIG 282
Query: 407 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 466
+ LGD++ +D S P TAQVA QQ + A N+ A PL PF F++ GEM+
Sbjct: 283 LSDVLGLGDATYNKDHS---WPPTAQVALQQGELAARNVMALRTSSPLQPFEFKDFGEML 339
Query: 467 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
LG +A+++ G TL GP+ R+ AYL +LP L+ G +WL
Sbjct: 340 SLGVGEASITGM---GFTLAGPLAFQIRRGAYLTKLPGLSLGLRSGGAWL 386
>gi|148240511|ref|YP_001225898.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. WH
7803]
gi|147849050|emb|CAK24601.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. WH
7803]
Length = 391
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 211/449 (46%), Gaps = 66/449 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ ++ I ++GGGF GL +AL+ S V +P ++L++ +F+F P+LYELLSGE+
Sbjct: 5 PNPQEQPILVVGGGFAGL-SALQAFSRV---HPRPPLVLIEPRSKFLFVPLLYELLSGEL 60
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WE+AP + LL GV +D V+ + DH + T+GG + Y
Sbjct: 61 QGWEVAPDYGQLLQARGVSHVQDSVRSINLEDH------VVTTNGGQRM-------PYSQ 107
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
LVL+ GA P+ +PG E A F LED + +L EL R G +L+ +VG G
Sbjct: 108 LVLATGAVPEDFGIPGVREHALRFHALEDIPPLQARLRELRHRPSGTSTLV---IVGAGA 164
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELA + + L+ V + I NRE A + L R G V
Sbjct: 165 TGVELACKLVDLLDGAARVHLVEQGEQILSRSRAFNREQAERALKQR------GVTVHLK 218
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA-DLVLWTVGSKP 373
RV A+ Q G+E ++ +A D ++WT GS+P
Sbjct: 219 TRVLNVSANAVQ-------------------------WSGVEGEVEQAHDGLIWTAGSRP 253
Query: 374 LLPHVEPPNNRLHD-LPLNARGQAETDETLCVKGHPRIFALGD--SSALRDSSGRPLPAT 430
+P + P H LP+ DETL + G P + LGD S D P P +
Sbjct: 254 NIPELTPSIAPHHKRLPV--------DETLRLIGQPDVLVLGDIASQPTIDEGQTPWPLS 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
AQVA QQ A +L + PF F++LGEM+ LG DA ++ GVTL GP+
Sbjct: 306 AQVAIQQGQAAARSLQSHRQGNRSDPFVFKDLGEMLSLGIGDATLTGM---GVTLAGPLA 362
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWLTKS 519
R+LAYL R+P L+ +WL S
Sbjct: 363 FQMRRLAYLTRMPGLSLGLRSAGAWLFSS 391
>gi|425453145|ref|ZP_18832959.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
7941]
gi|389764643|emb|CCI09207.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
7941]
Length = 420
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 222/443 (50%), Gaps = 56/443 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + G A++ F +LED ++ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNCWPDILGLADYGLTFRSLEDVEKLQTAIHDLETQ--GKYS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L +R
Sbjct: 166 GVELACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVSLYLNTGLR--- 222
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
E A N++++I DL+LWT G++
Sbjct: 223 ------------EVAANSMTVFKDNTNEFI---------------PIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTK 518
Y++RLP+ H+LKV W K
Sbjct: 366 FVYILRLPSQRHQLKVFQHWAKK 388
>gi|443669203|ref|ZP_21134440.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa DIANCHI905]
gi|159029618|emb|CAO90279.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330505|gb|ELS45216.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa DIANCHI905]
Length = 420
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 222/443 (50%), Gaps = 56/443 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALNLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
VL++G + G A++ F +LED ++ + +LE + GK S I +A++G G +
Sbjct: 109 VLAVGVRNCWPDILGLADYGLTFRSLEDVEKLQTAIHDLETQ--GKSS-INLAIIGGGPN 165
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA V++RL +KG V + I R A+ + L A+ V L L +R
Sbjct: 166 GVELACKVADRLGKKGKVYLVERNEEILQNFPKSVRVASYRSLLAKNVSLYLNTGLR--- 222
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
E A N++++I DL+LWT G++
Sbjct: 223 ------------EVAANSITVFKDNTNEFI---------------PIDLLLWTAGTQ--- 252
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+
Sbjct: 253 --AQDWINNL-DCQKTAQGKLLTRFSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAY 308
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q A N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+
Sbjct: 309 QAASLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRR 365
Query: 496 LAYLIRLPTDEHRLKVGVSWLTK 518
Y++RLP+ H+LKV W K
Sbjct: 366 FVYILRLPSQRHQLKVFQHWAKK 388
>gi|443317936|ref|ZP_21047242.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
gi|442782462|gb|ELR92496.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
Length = 421
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 213/434 (49%), Gaps = 55/434 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+CI+GGGFGGLYTAL L + + + L++ ERF+F P+LYE+L+ E+ WEI
Sbjct: 26 PRVCIVGGGFGGLYTALYLSQKCRRRRQPCDITLIEPRERFLFTPLLYEVLTDELKPWEI 85
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP + LL T ++ + L D TV L SG + YD+LV++
Sbjct: 86 APAYVTLLQGTAIRHCRTTADQLHLDDR-------------TVDLASGETLVYDYLVVAT 132
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIRVAVVGCGYSGV 257
G++ + VPG A+ F TL DA +D +L++LE R I+V +VG G SGV
Sbjct: 133 GSQERPVPVPGLADHTHRFRTLADAQALDSRLADLEARAQTHNPAPPIQVTIVGGGPSGV 192
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA +++RL +G +Q + + + R A++ L R+VQ+ L V I
Sbjct: 193 ELACKLADRLGPRGHLQLVERGDCLLKPFSQRVRRVAIQALHRRRVQICLNMGVVAI--- 249
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
EA ++ P QP DLV+W G++P +P
Sbjct: 250 ---EADCITLDTPHGPTA-------------QP-----------TDLVVWVAGTQP-MPW 281
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
+ P +GQ +L + P +F +GD + + R P TAQ A+Q
Sbjct: 282 LGDPVAE------TDQGQQLPQGSLQLPQFPEVFVVGDQAVMGWQRDRAAPQTAQAAYQA 335
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
A NL AAI R PFR+ +LG+MM LG +A VS SF G+ L GP+ R++
Sbjct: 336 AATVAHNLLAAIQGRSPKPFRYLHLGDMMTLGYRNALVS-SF--GLVLHGPLAGLTRQVV 392
Query: 498 YLIRLPTDEHRLKV 511
YL RLPT HR +V
Sbjct: 393 YLQRLPTWSHRGRV 406
>gi|124021971|ref|YP_001016278.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9303]
gi|123962257|gb|ABM77013.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9303]
Length = 389
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 203/410 (49%), Gaps = 57/410 (13%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+P ++L++ +RFVF P+LYELLSGE+ AWE+AP + LL+ G+ +DRV+ +
Sbjct: 33 RPPIVLIEPRQRFVFLPLLYELLSGELQAWEVAPPYHSLLSQRGIALLEDRVESI----- 87
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
T TV SGL + Y LV+S G+ P +PG + A F L D +
Sbjct: 88 --------DTKAKTVTTSSGLKLNYAQLVISTGSAPTDFDIPGVRKHALMFHRLNDVEVL 139
Query: 228 DRKLSELE-RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG 286
+++ EL+ RRN +D + +VG G +GVELA +++ L+ + I + + P+
Sbjct: 140 RQRIKELQLRRNPRQD----LVIVGAGPTGVELACKLADLLDGAAELHLIELGERVLPSA 195
Query: 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 346
N+E A + LS R V + L VR I + E K E
Sbjct: 196 KAFNQEQAERALSKRGVHVHLLTQVRSI-STDQVELLSKHKE------------------ 236
Query: 347 ELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 406
PAI S I + LV WT G++P++P + P D L + D L V G
Sbjct: 237 ---PAIS---SAITHSGLV-WTAGTRPVIPALNP------DFVLT-EARLPIDSCLQVIG 282
Query: 407 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 466
+ LGD++ +D S P+TAQVA QQ + A N+ A PL PF F++ GEM+
Sbjct: 283 LSDVLGLGDATYNKDHS---WPSTAQVALQQGEIAARNVMALRASSPLQPFEFKDFGEML 339
Query: 467 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
LG +A+++ G TL GP+ R+ AYL +LP L+ G +WL
Sbjct: 340 SLGVGEASLTGM---GFTLAGPLAFQIRRGAYLTKLPGLSLGLRSGGAWL 386
>gi|428182756|gb|EKX51616.1| hypothetical protein GUITHDRAFT_102877 [Guillardia theta CCMP2712]
Length = 447
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 217/433 (50%), Gaps = 66/433 (15%)
Query: 71 TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYE 128
+ W +K RICI+GGGFGGLYTAL L + K + V L+ SERFV+ P LYE
Sbjct: 63 SLNWSEK---RICIVGGGFGGLYTALNLAKYLEAKGKSKETSVTLISDSERFVYSPFLYE 119
Query: 129 LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
L++GE+ WE+AP + D+L TGV+F + + + + + ++ +A GG
Sbjct: 120 LVTGELQDWEVAPVYTDVLKGTGVKFLQGKAQSVDKINKT-ISVDLASLSGG-----GKQ 173
Query: 189 IVEYDWLVLSLGAEPK--LDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR 246
V YD L+L+ G K + PG F F +LEDA ++ +L+ L+ F I+
Sbjct: 174 EVSYDKLILATGGNSKDEKEGEPG----VFGFRSLEDAKKLRARLAGLK---FANKKPIK 226
Query: 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+AVVG GY G+EL+ +++ +++ + I P NR A + R +L
Sbjct: 227 IAVVGGGYPGIELSCSLAANMKKNVDITIFQRGDKILPRANLYNRIVA----TQRLAELG 282
Query: 307 LGYFVRC-IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
+ F+R + + + S KQ +GA+ DK+ D++
Sbjct: 283 VKKFLRTEVVEIKDDSVSWKQ-NNGAVA-------EDKF------------------DII 316
Query: 366 LWTVGSKPLLPH---VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
+ S+P + + V+ + R+H ++ L VK ++A+GD + DS
Sbjct: 317 IRASSSRPSVLNGLDVQEEDGRIH-----------VNDMLKVKEEEDLYAVGDIARCIDS 365
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
SG P+P+TAQ+A QQA+ A WN+ A + L FR Q+LGEM+ LG A++S S G
Sbjct: 366 SGSPVPSTAQIAMQQAEVAAWNVVADLTGGVPLTFRRQDLGEMLSLGGYTASLS-SKAFG 424
Query: 483 VTLDGPIGHSARK 495
+ LD + H R+
Sbjct: 425 LQLDDKLAHLLRR 437
>gi|17232703|ref|NP_489251.1| hypothetical protein alr5211 [Nostoc sp. PCC 7120]
gi|17134350|dbj|BAB76910.1| alr5211 [Nostoc sp. PCC 7120]
Length = 470
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 214/458 (46%), Gaps = 86/458 (18%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
ILGGGF GL+TAL L Q + ++L++Q +RF FKP+LYELLSGE+ + ++ PR
Sbjct: 9 VILGGGFAGLFTALHLS----QQNYSYPIILIEQRDRFSFKPLLYELLSGELHSQQVYPR 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ +LLA + V+F +D V+ + H V SG Y L+L+LG++
Sbjct: 65 YQELLAGSKVKFVQDTVQSI-------------DIHQQRVDTVSGQAFHYSNLILALGSK 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKL----------SELERRNFGKDSLIRVAVVGC 252
PGAAE+A PF++ E A + + L S+ ERR L+ VA++G
Sbjct: 112 TTYFATPGAAEYAMPFTSGEQAIALRQHLRHKLYQAIQTSDSERRRL----LLTVAIIGA 167
Query: 253 GYSGVELAATVSERL----EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
G SG+ELA T+++ L +E G G+ VL R +++
Sbjct: 168 GPSGIELACTLADLLPIWYDELG-----------------GDGSEIHVVLVNRSREIL-- 208
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPN--IAADKNSDKYILELQPAIKGLES------QIF 360
G+ + ++ A+ N I D D + ++ P G+E Q+
Sbjct: 209 --------KGDVNSHLRCTVERAMKNRLIPVDFLFDAAVTKITP--DGVECRRHGQIQML 258
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSAL 419
+A + WT G+ P+ L +LP++ RG+ TL + P IFA GD +
Sbjct: 259 QAGTIAWTAGTA--------PHPLLMELPVSQNRGRLLVKPTLQLSNFPEIFAAGDCAT- 309
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
S P P TAQVA+QQ NL ++P +P + Q G +M LG N+ +
Sbjct: 310 --DSDHPQPPTAQVAYQQGIAIAQNLQRISQNKPTIPVQVQLRGTLMKLGLNEGVA--NL 365
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
V + G GH R+ YL LP H LKV WLT
Sbjct: 366 FNKVQIKGQAGHLIREGTYLQLLPNSAHNLKVTTEWLT 403
>gi|88807179|ref|ZP_01122691.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. WH 7805]
gi|88788393|gb|EAR19548.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. WH 7805]
Length = 391
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 210/449 (46%), Gaps = 71/449 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++P I ++GGGF GL T L L + +P ++L++ +FVF P+LYELLSGE+ A
Sbjct: 8 QERP-IIVVGGGFAGLSTLLTLSRV----HPRPPLVLIEPKAQFVFVPLLYELLSGELQA 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WE+AP +A L+ G+ +D V + DH T GG L+ Y LV
Sbjct: 63 WEVAPDYAPLIQGHGISHIRDIVTSVNVEDH------SITTAGGDHLV-------YSQLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+ GA P +PG + A F +L D + +L +L R G S V +VG G +G
Sbjct: 110 LATGAVPDDFGIPGVRDHALGFHSLRDLAPLQERLRQLRLRPSGTSS---VVIVGAGATG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR- 315
VELA + + LE V ++ I NRE A + L R + + L V ++
Sbjct: 167 VELACKLVDLLEGAAQVHLVDQGDQILARSRAFNREQAERALKRRGINVHLKTRVLSVKP 226
Query: 316 ---RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
R E V+QP G I WT GSK
Sbjct: 227 DSVRWNGIEGDVEQPHDGLI----------------------------------WTAGSK 252
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD--SSALRDSSGRPLPAT 430
P +P ++ P+ LH + + D+TL ++G P + ALGD + A D P P +
Sbjct: 253 PNIPDLQ-PSAELH------QKRLPVDQTLRLQGQPDVLALGDIATHAPTDEGQTPWPLS 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
AQ A QQ A L A + PF FQ+LGEM+ LG +DA ++ G+TL GP+
Sbjct: 306 AQAAIQQGQAAARTLEAHLKGGTPSPFIFQDLGEMLSLGISDATITGM---GMTLAGPLA 362
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWLTKS 519
R+LAYL RLP L+ +WL S
Sbjct: 363 FKIRRLAYLTRLPGLSLGLRSAGAWLLGS 391
>gi|347756744|ref|YP_004864307.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
gi|347589261|gb|AEP13790.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
Length = 441
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 218/458 (47%), Gaps = 75/458 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LGGGF GL TA +L + W + ++ LVD+++RF+F PM YE+L+GEV+ WEIAP
Sbjct: 13 ILVLGGGFAGLNTAFQLSNYPWT--RPVRITLVDRNDRFLFTPMAYEILTGEVEVWEIAP 70
Query: 142 RFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D+L N V+F + +R+ L +G TH YD+LVL+
Sbjct: 71 LYRDILGNRPVRFVQGVIERIDLEKRQVQVG-----DTTH------------RYDYLVLA 113
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIRVA-----VVGC 252
LG P VPGA +++ PF L + L+ L+R D +R A VVG
Sbjct: 114 LGGRPNFRQVPGADKYSQPFYDLAHVQAYQKHLAHTLDRARQTTDPKVRKALLNFLVVGA 173
Query: 253 GYSGVELAATVSERLEEK----GI------VQAINVETTICPTGTPGNREAALKVLSARK 302
G GVE++ +++ L+ + G+ + I+ I AL L R+
Sbjct: 174 GTCGVEVSCKLADYLDAQSRAYGLDRQEMEIHLIDRNERILRGVAHRLEPIALDALRRRR 233
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V LVL + V + G ++ + G + +AA + +E+ P + L +
Sbjct: 234 VNLVLDWGVTKVTPEG---VEIRCDKQGTLKQVAAATVTWTGGIEMHPLLTALPVE---- 286
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
+A G+ + L V G ++ALGD++
Sbjct: 287 ---------------------------KDAHGRIRVTQQLEVPGQRGVYALGDATHFPTD 319
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
G+ LPATAQVA +Q++ A WN+ A I LP+ + LGEM+ LG +A V +F G
Sbjct: 320 DGQGLPATAQVAVRQSEIAAWNIRADIEGWVKLPYIYIGLGEMLTLGIGEAGVD-AF--G 376
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSA 520
+ + G +G + R+ YL +LPT +++VG +W+ + A
Sbjct: 377 MCIGGTLGAAMRRAVYLTKLPTMGLKVRVGGTWMGEIA 414
>gi|224012847|ref|XP_002295076.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969515|gb|EED87856.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 432
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 213/464 (45%), Gaps = 70/464 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDK-----------KPQVLLVDQSERFVFKPMLY 127
+P + ILGGGFGG+ TAL L SL W +P++ L+D+SERFVF P+LY
Sbjct: 1 QPHVVILGGGFGGINTALTLPSLPWNSHSVSSGKQETSCIQPRITLIDKSERFVFLPLLY 60
Query: 128 ELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTV-LLES 186
EL + E+AP F LL +T V + + VN + T +E+
Sbjct: 61 ELCVEDASLDEVAPTFKTLLESTQV-------------EGIDVNNQQVVIYKSTTNTIET 107
Query: 187 GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-----ERRNFGK 241
++YD LV++ GAE LD +PGA E+A PF T+E + R+L+ L ER +
Sbjct: 108 ---IDYDALVIATGAEISLDAIPGATEYALPFYTVEQCLELKRRLALLDSYLDERAKMEE 164
Query: 242 -DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT-----ICPTGTPGNREAAL 295
+ V VVG GYSGVELA + RL + V + T NR+A +
Sbjct: 165 MQQKVNVVVVGGGYSGVELALNLVARLGGGDDDGDVKVSLVHRGEQVLEYATEYNRKAGM 224
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+ L V ++ + V +E + S K S +
Sbjct: 225 ERLVEAGVNVLTS---TSVVEVTPWEEETQHSSSALTKQQCMVKLSTS-------GVSND 274
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E+ + ++LWT G+ P N + LP + G+ T TL V +P +FA+GD
Sbjct: 275 ETSLLPTTILLWTAGATPTSKVNAGVRNSI--LPRDVMGRILTSPTLNVPEYPNVFAIGD 332
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI-NDR--------------PLLPFRFQ 460
S + P P TAQVA Q A A WN++A + ND LLPF F
Sbjct: 333 CSRPKKV---PYPGTAQVAMQMATVAAWNIYATLSNDSNAGKARAGSNRETVKLLPFSFL 389
Query: 461 NLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 504
NLGEMM LG NDA ++ + V L GP R+L Y R+PT
Sbjct: 390 NLGEMMTLGSNDATIT-TLGGRVGLSGPAASWLRRLIYAARMPT 432
>gi|157412434|ref|YP_001483300.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9215]
gi|157387009|gb|ABV49714.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9215]
Length = 397
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 205/439 (46%), Gaps = 63/439 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL L++L + +L+VD F+FKP++YE+LS E+ +W
Sbjct: 5 QKP-IVIVGAGFAGMTFALNLKNL----NPSLPILVVDSETNFIFKPLMYEVLSKEIRSW 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA + ++ G+ F ++ + + +++ + L + Y +LV+
Sbjct: 60 EATPKFAKIFSDAGITFLRNYLTKISFKENI-------------LEFSDNLKLSYQYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
G+ P + G E + F+ D KL+ +++ S ++ +VG G SG+
Sbjct: 107 CTGSIPNSFFIKGVDENCYFFNDAHDL----NKLNSFLKKSQDITSHKKLFIVGGGPSGI 162
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA + + ++ + I I NRE A K L RK++++L ++ V
Sbjct: 163 ELACKIKDIFTDQFEINLIEKSNEILNKNKIFNREQAEKALEKRKIKVLLN---SSVKEV 219
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
+ + S+ E+G F+ D+V+WT G KP L +
Sbjct: 220 SDTKISI-SSEAGITS--------------------------FDKDIVIWTAGVKPNLSY 252
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
+E D G+ + L ++ H FA+GD S ++ LP TAQVA Q+
Sbjct: 253 LET------DQITKKFGRILVNNNLQIENHKNCFAIGDISVIQ--GMEDLPITAQVAMQE 304
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+ NL I + LLPF FQ+ GEM+ LG +A++S GVT G + AR+L
Sbjct: 305 GNHLANNLELLIQGKDLLPFEFQDNGEMISLGIGEASISGL---GVTFSGKLAFEARRLI 361
Query: 498 YLIRLPTDEHRLKVGVSWL 516
Y +LP LK SW+
Sbjct: 362 YASKLPDITESLKSASSWI 380
>gi|254413270|ref|ZP_05027041.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179890|gb|EDX74883.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Coleofasciculus chthonoplastes PCC 7420]
Length = 454
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 219/457 (47%), Gaps = 78/457 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILGGGF GL+TAL L + V+L+D+ ERF FKP+LYE SGE+DA +
Sbjct: 7 QTVILGGGFTGLFTALHLAHHHY----PRSVILIDRDERFCFKPLLYEYCSGEMDAQNVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF LL ++GV F +D V+ + + V L SG Y LVLSLG
Sbjct: 63 PRFDQLLQDSGVVFVQDTVQDIDLTQR-------------EVKLVSGTTYNYSNLVLSLG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------FGKDSLIRVAVVGCGY 254
+ V GA E AFP T ++A +D++L + +R + + L+ VAV+G G
Sbjct: 110 SVTGYFGVEGAKENAFPLRTQQNAIAIDQQLRDCLQRAVQTIDPYIRRQLLTVAVIGAGP 169
Query: 255 SGVELAATVSERL-----------EEKGIVQAINVETTICPTGTPGN--REAALKVLSAR 301
SGVE+AAT+++ L E+ IV IN + I G + RE + L R
Sbjct: 170 SGVEMAATLADLLPHWYEALGGTPEDIRIV-LINHGSQIL-KGDINDPLREPTYQELQKR 227
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V + L + E +A+ +P++ + K+ + L AI
Sbjct: 228 AVPVEL---------IMEAQATAIRPDA-----VEYKKDDKTHTLPTSTAI--------- 264
Query: 362 ADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
WT G + PL+ ++ P ++ + G+ TL + P +FA GD +A+
Sbjct: 265 -----WTTGTSTNPLIKNLPIPKDK-----RDHHGRPYVTPTLQLLDFPEVFAGGDCAAI 314
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
+D+S LP TAQVA+QQ NL+A DR LLP + G ++ LG N+ A +
Sbjct: 315 QDNS---LPPTAQVAYQQGQAIADNLFALAFDRQLLPAQVNIRGTLLKLGINNGAA--NL 369
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
E + G +GH R+ YL LPT LK+ WL
Sbjct: 370 FEKFEVTGEMGHLIRQGTYLELLPTPARNLKITAQWL 406
>gi|254526428|ref|ZP_05138480.1| NADH dehydrogenase, fad-containing subunit [Prochlorococcus marinus
str. MIT 9202]
gi|221537852|gb|EEE40305.1| NADH dehydrogenase, fad-containing subunit [Prochlorococcus marinus
str. MIT 9202]
Length = 397
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 206/439 (46%), Gaps = 63/439 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL L++L + +L+VD F+FKP++YE+LS E+ +W
Sbjct: 5 QKP-IVIVGAGFAGMTFALNLKNL----NPSLPILVVDSETNFIFKPLMYEVLSKEIRSW 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA + ++ G+ F ++ + + +++ + L + Y +LV+
Sbjct: 60 EATPKFAKIFSDAGITFLRNCLTKISFKENI-------------LEFSDNLKLSYQYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
G+ P + G E + F+ D KL+ +++ S ++ +VG G SG+
Sbjct: 107 CTGSIPNSFFIKGVDENCYFFNDAHDL----NKLNSFFKKSQDITSHKKLFIVGGGPSGI 162
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA + + ++ + I I NRE A + L RK+ ++L ++ V
Sbjct: 163 ELACKIKDIFTDQFEINLIEKSNEILNKNKIFNREQAEQALEKRKINVLLN---SSVKEV 219
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
+ + S+ E+G F+ D+V+WT G KP L +
Sbjct: 220 SDTKISI-SSEAGITS--------------------------FDKDIVIWTAGVKPNLSY 252
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
+E D G+ + L ++ H FA+GD S ++ LP TAQVA Q+
Sbjct: 253 LET------DQITKKFGRILVNNNLQIENHKNCFAIGDISVIQ--GMEDLPITAQVAMQE 304
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+ NL I + LLPF FQ+ GEM+ LG +A++S GVTL G + AR+L
Sbjct: 305 GNHLANNLALLIQGKDLLPFEFQDNGEMLSLGIGEASISGL---GVTLSGKLAFEARRLI 361
Query: 498 YLIRLPTDEHRLKVGVSWL 516
Y +LP + LK SW+
Sbjct: 362 YASKLPDIKESLKSASSWI 380
>gi|428208267|ref|YP_007092620.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
gi|428010188|gb|AFY88751.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
Length = 417
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 220/450 (48%), Gaps = 61/450 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R I+G GF GL+TAL L L + K Q++L+D+SERFVFKP+L+E L+G++DA ++
Sbjct: 7 RTAIVGSGFTGLFTALYLSHLGY----KGQIILIDRSERFVFKPLLFEFLNGQMDANQVW 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P++ +LL +GV F +D V+ + + G + L SGL Y LVL++G
Sbjct: 63 PQYEELLQGSGVTFVQDTVEQIDLA-------------GRKIELASGLHYTYTHLVLAVG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIR-----VAVVGCGY 254
+ PGA ++FPF + D + + L + L+R + +DS +R +A++G G
Sbjct: 110 STVGYFGTPGAEAYSFPFRSGLDVLALRQHLRQSLQRASQIEDSQLRQKLLTIAIIGAGP 169
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELA T+++ L N T+ GN VL R ++ G C+
Sbjct: 170 TGVELANTLADLLP--------NWYATLG-----GNPHEIRLVLMNRSQNILSGDVNACL 216
Query: 315 RRV--GEFEASVKQPE--SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
R + V E +GA A D +Y + QPA + EA+ ++WT G
Sbjct: 217 RETAYAALQKHVVPVELLTGAAVT-ALDSGKVEYTRDDQPA-------VLEAETMIWTAG 268
Query: 371 S--KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
+ PL+ + P+ + + +G+ L + G+P +FA GD L +P P
Sbjct: 269 TAINPLVKKLPIPDEQ-----RDKQGRPFVTPALNLVGYPEVFAGGDCVTLL----KPEP 319
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
A AQVA+QQA NL A R G +M LG +AA + G
Sbjct: 320 ALAQVAYQQAKAIARNLVAVSAGEKPKASRIFLRGTLMKLGTQEAAA--EIFNKHEVKGR 377
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
IGH+ R+L YL LPT H LKV WL++
Sbjct: 378 IGHAIRQLTYLEMLPTPVHNLKVTTEWLSE 407
>gi|123965327|ref|YP_001010408.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9515]
gi|123199693|gb|ABM71301.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9515]
Length = 395
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 132/448 (29%), Positives = 210/448 (46%), Gaps = 68/448 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I I+G GFGG+ A L+ L + +L+VD RF+FKP++YE++S E+ W
Sbjct: 5 KKP-IVIVGAGFGGMTVASNLKRL----NPSLPILVVDSEARFLFKPLMYEVISEELSMW 59
Query: 138 EIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E P F+ + ++ G+ F ++ K+ L N + H G Y++L+
Sbjct: 60 ETTPEFSKIFSDLGITFLRNCLTKIRFDEKILEFNDDL---HIG-----------YEFLI 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L G+ V G E + F+ L+D ++ L + + K+ + V+G G SG
Sbjct: 106 LCTGSVSSNFSVKGVDENCYFFNNLKDLTKLKSFLKQFQNNKIKKN----LFVIGAGPSG 161
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VE+A + + ++K + + I NRE A K L RK+ ++L V+ I
Sbjct: 162 VEIACKIHDTYKDKFDISIVERSNEILGQNKIFNREEAEKALERRKINILLNSTVQEI-- 219
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
S+K I L + E + E D+V+WT G KP LP
Sbjct: 220 ------------------------SEKKISILNDS----EIKKLEQDVVIWTAGIKPNLP 251
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
+++ ++ +G+ + ++ + FA+GD S ++ LP TAQVA Q
Sbjct: 252 YIDEQVKQI-------KGRILVNNKFQIENYLNSFAIGDISIIQ--GMEELPLTAQVAMQ 302
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 496
Q D N+ ++ LLPF FQ+ GEM+ LG +A++S GVTL G + AR+L
Sbjct: 303 QGDHLAKNIERIFLEQDLLPFDFQDNGEMISLGMGEASISAL---GVTLSGKLAFEARRL 359
Query: 497 AYLIRLPTDEHRLKVGVSWL--TKSAID 522
Y ++P LK SWL KS I+
Sbjct: 360 IYASKMPDISRSLKSTASWLFQKKSIIN 387
>gi|427702846|ref|YP_007046068.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
gi|427346014|gb|AFY28727.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
Length = 406
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/425 (33%), Positives = 206/425 (48%), Gaps = 53/425 (12%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
LYTAL L Q P VLL++ ++RF+F P+LYELLSGE+ WEIAPR+ LLA G
Sbjct: 30 LYTALALA----QRKHHPPVLLIEPNDRFLFLPLLYELLSGELRGWEIAPRYDGLLAGRG 85
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
+ + +DRV+ + T G + G + Y LVL+ GAE VPGA
Sbjct: 86 LAWLQDRVERI-------------DTDGHRLHTAGGRTIAYGRLVLATGAESNTFAVPGA 132
Query: 212 AEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271
+ F +L D R+ R +++L ++ L R+AVVG G +GVELA +++ +
Sbjct: 133 DRHSLGFRSLADVERLQRLVADLRQQ---PRPLQRLAVVGAGPTGVELACKLADMAQGSA 189
Query: 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 331
+++ I + P NRE A L R V+L V+ E+ A
Sbjct: 190 VIELIEQGPQLLPQARAFNREQAALALQRRDVRL-------------RTRTQVEAVEAEA 236
Query: 332 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391
I + + D PA ++ V+WT G P ++P +
Sbjct: 237 I-TLRCHPDGDS------PA----HAETLAVRAVVWTAGLSFRPPRIDPAPA------CD 279
Query: 392 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451
+RG+ L ++ H +F GD +A D PATAQVAFQQA NL ++
Sbjct: 280 SRGRLLCGPDLRLRDHEGLFVAGDLAAPVDPEDTTPPATAQVAFQQAPVLAANLIRSLAG 339
Query: 452 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 511
PL PF + +LGEMM LG +A+++ GVTL GP + R+LAYL RLP H+ +V
Sbjct: 340 EPLEPFHWNDLGEMMSLGVGEASLT---AAGVTLAGPAAYQLRRLAYLTRLPGRSHQWRV 396
Query: 512 GVSWL 516
WL
Sbjct: 397 AAGWL 401
>gi|33860642|ref|NP_892203.1| NADH dehydrogenase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33633584|emb|CAE18541.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 394
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 208/455 (45%), Gaps = 80/455 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I I+G GFGG+ A L+ L + +L+VD +F+FKP++YE+LS E+ W
Sbjct: 5 KKP-IVIVGAGFGGMTVASNLKEL----NPSLPILVVDSEAKFIFKPLMYEVLSEELSMW 59
Query: 138 EIAPRFADLLANTGVQFFKDRV-------KLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
E AP F+++ +N G+ F ++ + K+L SD L +
Sbjct: 60 ETAPEFSNIFSNLGITFLRNCLTKIRFDEKILEFSDDLNIG------------------- 100
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
Y+ L+L G+ V G E + F+ L D ++ L + + K+ + V+
Sbjct: 101 -YECLILCTGSLSSNFSVRGVDENCYFFNNLNDLKKLKSFLQKFQNDKIKKN----LFVI 155
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G SGVE+A +++ + K + + I NRE A K L RK+ ++L
Sbjct: 156 GAGPSGVEIACKINDIYKNKFDISIVERSNEILGRNKIFNREEAEKALEKRKINVLLNST 215
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
V+ I SD+ I + G E + + D+V+WT G
Sbjct: 216 VQEI--------------------------SDQKI----SILDGSEIKDLDQDIVIWTAG 245
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
KP LP+++ + G+ +E + FA+GD S ++ LP T
Sbjct: 246 VKPNLPYIDAQVTQ-------KDGRILVNENFQIDNCVNSFAIGDISIIK--GMEDLPLT 296
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
AQVA QQ + N+ ++ LLPF F++ GEM+ LG +A++S GVTL G
Sbjct: 297 AQVAMQQGNHLAKNIELLFQEKELLPFNFEDNGEMISLGIGEASISAL---GVTLSGKFA 353
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWL--TKSAIDS 523
AR+L Y ++P LK SWL KS I++
Sbjct: 354 FEARRLIYASKMPDISKSLKSTASWLFQKKSTINN 388
>gi|384253350|gb|EIE26825.1| FAD/NAD(P)-binding domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 406
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 162/311 (52%), Gaps = 21/311 (6%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+CILGGGFGGLYTALRL+SL+W KPQV L+D+S RFVFKP+LYELL+G E+
Sbjct: 4 PRVCILGGGFGGLYTALRLDSLLWPQGSKPQVTLIDRSSRFVFKPLLYELLNGGATQDEV 63
Query: 140 APRFADLLANTGVQF---FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
AP F+ LLA + F F ++ + GP A GG V+LE+G VEYDWLV
Sbjct: 64 APPFSQLLAPYSINFIQVFTVPLQTASLRQAVKARGPGA---GGRVMLENGSAVEYDWLV 120
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG++ + G E PF+T DA RV +L LE+ D ++ G
Sbjct: 121 LALGSDSVFFGIEGVKELCLPFNTYSDAMRVSVRLRMLEQLPGVADVVVVGGGY----CG 176
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV----- 311
+ELA TV+ER++ G V I I + G REAA + L + + ++ F+
Sbjct: 177 IELATTVAERMQGSGRVHLITGGEDILESSPLGQREAARRTLQDQGIDIIANAFLPFPAN 236
Query: 312 -RCIRRVGEFEASVKQPESGAIPNIAA-DKNSDKYILELQPAIKGLESQIFEADLVLW-- 367
+ R V P A+ +++ D + L P + + +AD V W
Sbjct: 237 NKGAVRTDATLRVVDHPRVFALGDVSGCDCEASTSAPTLAPTAQAPQVAFQQADYVAWNL 296
Query: 368 --TVGSKPLLP 376
++ +PLLP
Sbjct: 297 WASINRRPLLP 307
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 17/166 (10%)
Query: 383 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA------QVAFQ 436
N P N +G TD TL V HPR+FALGD S + P A QVAFQ
Sbjct: 228 NAFLPFPANNKGAVRTDATLRVVDHPRVFALGDVSGCDCEASTSAPTLAPTAQAPQVAFQ 287
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS------PSFVE-----GVTL 485
QAD+ WNLWA+IN RPLLPF++Q+LGEMM LGR AV+ P + GVT+
Sbjct: 288 QADYVAWNLWASINRRPLLPFKYQHLGEMMSLGRARGAVTLPVPLAPPLRQALNGGGVTV 347
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 531
+GP+ + R+ AYL R PT E R+ VG SWL ++A + +L Q L
Sbjct: 348 EGPLAGAMRRAAYLYRQPTAEQRMAVGASWLQQAATEGASLAQRML 393
>gi|434385308|ref|YP_007095919.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428016298|gb|AFY92392.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 435
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 146/482 (30%), Positives = 228/482 (47%), Gaps = 69/482 (14%)
Query: 61 VTSEDESASQTYTWPDK----KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ 116
+ +E ++ +T T P + +K ILGGGF GL+TAL L Q + P +L +D+
Sbjct: 4 IMTEVDTLDETLTIPTQLIAAQKLPTLILGGGFTGLFTALHLSH---QHYQTPTIL-IDR 59
Query: 117 SERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC 176
RF+FKP+LYE LSGE++ I PR+ +LL +G++F +D V+ +
Sbjct: 60 GSRFIFKPLLYEFLSGEMNTQYICPRYDNLLHKSGIEFIQDTVQSI-------------D 106
Query: 177 THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER 236
H V L SGL Y LVLSLG+ V GA E FS+ EDA + + L + +
Sbjct: 107 LHQRQVKLASGLHYNYRNLVLSLGSVVGYCGVEGAKEHTLQFSSTEDAVVLAKHLRDCLQ 166
Query: 237 R-----NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT--GTPG 289
R K +L+ A++G G +G+ELAAT+++ L P G
Sbjct: 167 RATQATGLEKQTLLTFAIMGAGCTGIELAATLADLL----------------PNWYALLG 210
Query: 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
L+V+ ++ Q +L IR + + N+A + + ++E++
Sbjct: 211 GDITDLRVVVIQRGQEILKGHSDSIRETTQTALQER--------NVAVELMLETEVIEVR 262
Query: 350 PAIKGLE--SQIFE--ADLVLWTVGS--KPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
P L+ +QI + A ++WT G+ PL+ + P + + GQ + T
Sbjct: 263 PNTVVLKRNNQIEQLCAATMIWTAGTAMNPLIDTLSIP-----EASRDRHGQLKLTNTSQ 317
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
+ G P +FA GD + + LPATAQVA+QQ NL A +RPLLP G
Sbjct: 318 LLGFPEVFAGGDCTVMEPQ----LPATAQVAYQQGAAISHNLQALSENRPLLPVEIGLRG 373
Query: 464 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 523
++ LG D +V+ F + + G +GH R+ AY+ LPT K + WL+
Sbjct: 374 TLLKLGL-DESVADLF-DRYQVKGHLGHLIRQAAYVDLLPTPARNFKGTIEWLSDELFHY 431
Query: 524 VA 525
+A
Sbjct: 432 IA 433
>gi|123967632|ref|YP_001008490.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. AS9601]
gi|123197742|gb|ABM69383.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. AS9601]
Length = 397
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 204/439 (46%), Gaps = 63/439 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL L+ L + +L+VD F+FKP++YE+LS E+ +W
Sbjct: 5 QKP-IVIVGAGFAGMTFALNLKKL----NPSLPILVVDSETNFIFKPLMYEVLSKEISSW 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA++ ++ G+ F ++ + + +++ + L + Y +LV+
Sbjct: 60 EANPKFANIFSDAGITFLRNCLTKIDFKENI-------------LEFSDELKLSYQYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
G+ P + G E + F+ + D +++ L + + K ++ +VG G SG+
Sbjct: 107 CTGSIPNSFFIKGVDENCYFFNDVNDLNKLNYFLKKSQNTALHK----KLFIVGGGPSGI 162
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA + + ++ + I I NRE A K L RK+ ++L ++ V
Sbjct: 163 ELACKIKDIFTDQFEINVIEKSNEILNKNKIFNREQAEKALEKRKINVLLN---STVKEV 219
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
E + ++ S + + DK D+V+WT G KP L +
Sbjct: 220 SETKITI----SSEVGITSLDK-----------------------DIVIWTAGVKPNLSY 252
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
+E D G+ + L ++ H FA+GD S + LP TAQVA Q+
Sbjct: 253 LET------DQITKKFGRILVNNNLQIENHKNCFAIGDISVIE--GMEDLPITAQVAMQE 304
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+ NL + + LPF FQ+ GEM+ LG +A++S GVTL G + AR+L
Sbjct: 305 GNHLANNLELLVQGKDPLPFEFQDNGEMISLGIGEASISGL---GVTLSGKLAFEARRLI 361
Query: 498 YLIRLPTDEHRLKVGVSWL 516
Y RLP LK SW+
Sbjct: 362 YASRLPDITESLKSASSWI 380
>gi|75908982|ref|YP_323278.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena variabilis ATCC 29413]
gi|75702707|gb|ABA22383.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anabaena variabilis ATCC 29413]
Length = 470
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 211/450 (46%), Gaps = 70/450 (15%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
ILG GF GL+TAL L Q + ++L++Q +RF FKP+LYELLSGE+ + ++ PR
Sbjct: 9 VILGAGFAGLFTALHLS----QQNYSYPIILIEQRDRFSFKPLLYELLSGELHSKQVYPR 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ +LLA + V+F +D V+ + H V SG Y LVL+LG++
Sbjct: 65 YQELLAGSKVKFVQDTVQSI-------------DIHQQRVDTVSGQAFHYSNLVLALGSK 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDS-----LIRVAVVGCGYSG 256
PGAAE+A PF++ E A + + L +L + DS L+ VA++G G +G
Sbjct: 112 TTYFATPGAAEYAMPFTSGEQAIALRQHLRRKLYQAIQTPDSEHRRLLLTVAIIGAGPAG 171
Query: 257 VELAATVSERL----EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG---Y 309
+ELA T+++ L +E G G+ VL R +++ G
Sbjct: 172 IELACTLADLLPIWYDELG-----------------GDGSEIHVVLVNRSREILKGDVNS 214
Query: 310 FVRCIRRVGEFEASVKQPESGAIP-NIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+RC E ++K + IP + D K E + + Q+ A + WT
Sbjct: 215 HLRCT-----VERAMK---NRLIPVDFLFDAAVTKITSEGVEYRRQEQIQMLPAGTIAWT 266
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
G+ PN L +LP++ RG+ TL + P IFA GD + S P
Sbjct: 267 AGTA--------PNPLLMELPVSQNRGRLLVKPTLQLSNFPEIFAAGDCAM---DSDHPQ 315
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
P TAQVA+QQ NL ++P +P + Q G +M LG N+ + V + G
Sbjct: 316 PPTAQVAYQQGIAIAQNLQRISQNKPTVPVQVQLRGTLMKLGLNEGVA--NLFNKVQIKG 373
Query: 488 PIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
GH R+ YL LP H LKV WLT
Sbjct: 374 QAGHLIREGTYLQLLPNSTHNLKVTTEWLT 403
>gi|116073854|ref|ZP_01471116.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. RS9916]
gi|116069159|gb|EAU74911.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. RS9916]
Length = 400
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 198/443 (44%), Gaps = 69/443 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+GGGF GL ALRL + +P V+LV+ ++F F P+LYELLSGE+ WE+ P
Sbjct: 16 VVIVGGGFAGLTVALRLS----RQRPRPGVVLVEPRKQFAFLPLLYELLSGEMQPWEVVP 71
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LL ++G+ DRV + D V SG + Y+ LVL+ G+
Sbjct: 72 SYDTLLNSSGIAVIHDRVSAVNWKDK-------------EVQTASGQRLAYEQLVLATGS 118
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLI-RVAVVGCGYSGVELA 260
+P VPG E A F + +D + +++ +L+R+ + + + +VG G +GVELA
Sbjct: 119 QPNDFGVPGVKEHALQFHSPDDVTALRQRIKDLQRQGGAVEGAVPALVIVGAGAAGVELA 178
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+++ E + V I I P NRE A L+ + V L V +
Sbjct: 179 CKLADLTEGRISVHLIEQGDRILPMAKAFNREQAEAYLAQQGVHCHLNTRVESV------ 232
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP----LLP 376
PN + ++ D +S + ++WT G+KP L+P
Sbjct: 233 -----------TPNDVSLRDGD-------------QSTVLPHQGLIWTAGNKPRRPQLIP 268
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG---RPLPATAQV 433
+ N RL DE L + P LGD + + G P P TAQV
Sbjct: 269 EITASNGRL-----------AVDEALRSQDLPDCLVLGDLAMRAQADGAERSPWPCTAQV 317
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A QQ + A L A PF + +LGEM+ LG A ++ G+TL GP+
Sbjct: 318 AMQQGEAAANTLIALQKGTQPEPFAYNDLGEMLSLGIGKATLTGM---GITLAGPLAFKL 374
Query: 494 RKLAYLIRLPTDEHRLKVGVSWL 516
R+L YL R P L+ +WL
Sbjct: 375 RRLTYLARFPRLSLGLRSAGAWL 397
>gi|126695432|ref|YP_001090318.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9301]
gi|126542475|gb|ABO16717.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9301]
Length = 397
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 202/441 (45%), Gaps = 67/441 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVD 135
+KP I I+G GF G+ AL L++L P +L+VD F+FKP++YE+LS E+
Sbjct: 5 QKP-IVIVGAGFAGMTFALSLKNLY------PSLPILVVDSEPNFIFKPLMYEVLSKEIR 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+WE P+FA++ ++ G+ F ++ + + D + + L + Y +L
Sbjct: 58 SWEATPKFANIFSDAGITFLRNCLTKISFKDSI-------------LEFSDELKLSYQYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
V+ G+ P + G E + F+ + D +++ L E + K ++ +VG G S
Sbjct: 105 VICTGSIPNSFFIKGVDENCYFFNDVHDLNKLNSFLKESQDTASHK----KLFIVGGGPS 160
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
G+ELA + + ++ + I I NRE + K L RK+ ++L ++
Sbjct: 161 GIELACKIKDIYTDQFEINVIEKSNEILNKNKIFNREQSEKALEKRKINVILN---STVK 217
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
V E + S+ S + + DK D+V+WT G KP L
Sbjct: 218 EVSETKISI----SSEVGITSLDK-----------------------DIVIWTAGVKPNL 250
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
+E D G+ + L ++ H FA+GD S + LP TAQVA
Sbjct: 251 SFLET------DQITKKFGRILVNNNLQIENHKNCFAIGDISVIE--GMEDLPITAQVAM 302
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
Q+ + N I + LPF FQ+ GEM+ LG +A++S GVTL G + AR+
Sbjct: 303 QEGNHLANNFELLIQGKDSLPFEFQDNGEMISLGIGEASISGL---GVTLSGKLAFEARR 359
Query: 496 LAYLIRLPTDEHRLKVGVSWL 516
L Y +LP LK SW+
Sbjct: 360 LIYASKLPDITESLKSASSWI 380
>gi|78778470|ref|YP_396582.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9312]
gi|78711969|gb|ABB49146.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9312]
Length = 404
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 205/439 (46%), Gaps = 63/439 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL +++L + V++VD + F+FKP++YE+LS E+ W
Sbjct: 12 QKP-IVIVGAGFAGMTAALNIKNL----NPSLPVIVVDSASNFIFKPLMYEVLSKEIRLW 66
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA++ ++ G+ F K+ + + +++ + L + + +LV+
Sbjct: 67 EATPKFANIFSDAGITFLKNCLTKISFKENI-------------LEFSDELKLSFQYLVI 113
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
G+ P ++ G E + F+ D +V L E ++ K ++ +VG G SG+
Sbjct: 114 CTGSIPNTFLIKGVEENCYFFNDFHDLNKVKSFLKESQKTLLHK----KLFIVGGGPSGI 169
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA + + +++ + I I NRE A L RK+ ++L ++ V
Sbjct: 170 ELACKIKDIYKDQFEINVIERSNEILSRNKIFNREQAETALEKRKINVLLN---TTVKEV 226
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
E + I+ + I L+ D+V+WT G KP L +
Sbjct: 227 SE----------------------TRIIISSEDGITSLDK-----DIVIWTAGVKPNLSY 259
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
++ D G+ + L ++ H FA+GD S + + LP TAQVA Q+
Sbjct: 260 LQT------DEITKKFGRILVNNNLQIENHNNCFAIGDISII--AGMEDLPITAQVAMQE 311
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 497
+ NL I + LPF FQ+ GEM+ LG +A+++ GVTL G + AR+L
Sbjct: 312 GNHLAKNLELLIQGKDPLPFEFQDNGEMISLGIGEASIAGL---GVTLSGKLAFEARRLI 368
Query: 498 YLIRLPTDEHRLKVGVSWL 516
Y +LP LK SW+
Sbjct: 369 YASKLPDINESLKSAYSWI 387
>gi|427729172|ref|YP_007075409.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
gi|427365091|gb|AFY47812.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
Length = 471
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 141/454 (31%), Positives = 209/454 (46%), Gaps = 76/454 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ILGGGF GL+TAL L Q + ++L++Q +RF FKP+LYELLSGE+ + ++ P
Sbjct: 8 IVILGGGFAGLFTALHLS----QQNYSHPIILIEQRDRFSFKPLLYELLSGELHSEQVYP 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
R+ +LLA + V F +D V+ + H V S + EY LVL+LG+
Sbjct: 64 RYQELLAGSNVSFVQDTVQSI-------------ELHQRRVNTASSQVFEYRNLVLALGS 110
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDS-----LIRVAVVGCGYS 255
+ PGAAE+A PF++ E+A + + L +L + D L+ A++G G +
Sbjct: 111 KTTYFNTPGAAEYAMPFTSGEEAIALRKHLRHQLHQAIQTPDPKRRRLLLTFAIIGAGPA 170
Query: 256 GVELAATVSERL----EEKG------IVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
G+ELA T+++ L +E G V IN I G+ + L+ R ++
Sbjct: 171 GIELACTLADLLPIWYDELGGDGSEIRVVLINRSREIL----KGDVNSHLRCTVQRAMK- 225
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
R I F+A+V + S + + ++Q+ +A +
Sbjct: 226 -----NRVIPVDFLFDATVTKITSDGVEYRQHN-----------------QTQMLQAGTI 263
Query: 366 LWTVGS--KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
WT G+ PLL + PNN RG+ TL + P + A GD + SS
Sbjct: 264 AWTAGTAPHPLLMELPVPNN---------RGRLLVTPTLQLSDFPEVLAAGDCAT---SS 311
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGV 483
P P TAQVA+QQ NL +P +P + Q G +M LG N+ + V
Sbjct: 312 DYPQPPTAQVAYQQGIAIAQNLKRMQERKPTIPIQIQMRGTLMKLGLNEGVA--NLFNKV 369
Query: 484 TLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+ G GH R YL LP H KV WLT
Sbjct: 370 QIKGQPGHLIRAGTYLQLLPNSVHNRKVTTEWLT 403
>gi|436737040|ref|YP_007318404.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428021336|gb|AFY97029.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 473
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 217/466 (46%), Gaps = 85/466 (18%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++K ILGGGF GL+TAL L Q+ ++P ++LVD+ +RF FKP+LYELLSGE+
Sbjct: 2 NQKSNPTLILGGGFVGLFTALHLSR---QNYQQP-IVLVDREDRFSFKPLLYELLSGELH 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++ PR+ DLLA + V F +D VK + H V+L SG YD L
Sbjct: 58 PRQVHPRYTDLLAESSVTFVQDTVKSI-------------DLHRQQVVLASGRDYAYDRL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAV 249
VL+LG++ PGAAE+A P ++ +A + DR ++L R + L+ VAV
Sbjct: 105 VLALGSKVTYLETPGAAEYALPLTSGAEAIALRDRLQAQLRRAVMTPNPKERCPLLTVAV 164
Query: 250 VGCGYSGVELAATVSERL-----EEKGIVQAINVETTICPTGT--PGN-----REAALKV 297
+G G +G+ELA T+ + L + G V + V I +G G+ R A +
Sbjct: 165 IGAGPAGIELACTLGDLLPLWYEDLGGDVDEVRV-ILINRSGELLKGDINSKLRSNAYRA 223
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L R VQL+ F+A+V A+ E + +G +
Sbjct: 224 LKQRGVQLL-------------FDAAVAAIHPDAV--------------EFK---RGERT 253
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL------NARGQAETDETLCVKGHPRIF 411
+A + WT G+ P+ L +LP+ + RG+ TL + P +F
Sbjct: 254 YSIKAGTIAWTAGTS--------PHPLLMELPISKPEYRDRRGRLLVTPTLQLPDFPEVF 305
Query: 412 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
A GD + RD P P TAQVA+QQ NL A +PL P G +M LG N
Sbjct: 306 AAGDCATNRDD---PQPPTAQVAYQQGKAIAHNLQAIEEGKPLAPAMVHLRGTLMKLGLN 362
Query: 472 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+ + + + G GH R YL LPT +KV WLT
Sbjct: 363 EGVA--NLFDKFPIKGQPGHLIRTATYLELLPTIWRNVKVTADWLT 406
>gi|318040557|ref|ZP_07972513.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CB0101]
Length = 390
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 132/406 (32%), Positives = 195/406 (48%), Gaps = 55/406 (13%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V+L++ ERF+F P+LYELLS E+ WE+AP +++LLA GV + +DRV +
Sbjct: 36 VILIEPQERFLFLPLLYELLSQELRRWEVAPSYSELLAGKGVVWLRDRVSQI-------- 87
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
T + E G + Y LVL+ G +P +PG AE F +L D VDR
Sbjct: 88 -----DTAAQQLRTEGGQQIAYSQLVLATGGKPTTYGIPGVAEHCLGFRSLAD---VDRL 139
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGN 290
+++ + L R+A+VG G SGVELA +++ L+ +++ I + P N
Sbjct: 140 QQLVQQLKQQQRPLQRLAIVGAGASGVELACKLADLLQGAAVLELIEQGEELLPASRSFN 199
Query: 291 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350
RE A + L R ++L G V + + LQ
Sbjct: 200 REQAQQALLKRDIRLRTGTRVMAV---------------------------SATAVSLQ- 231
Query: 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 410
+G S+ D V+WT G +P + P L L+ RG+ L V G +
Sbjct: 232 --RGNSSETLSCDGVIWTGGVVGSVPEITPA------LELDRRGRLPCQSDLRVIGAEHV 283
Query: 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
FA+GD++ D+SG PATAQVA+QQA NL L PF + +LGEM+ LG
Sbjct: 284 FAMGDAALCPDASGDAHPATAQVAYQQATCVAANLLRQRRGEELQPFIWNDLGEMLGLGI 343
Query: 471 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
A+++ G+TL G R+LAYL R+P +H+L+V WL
Sbjct: 344 GHASLTGM---GITLAGAAAFQLRRLAYLARMPGLQHQLRVAGGWL 386
>gi|113954176|ref|YP_731705.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CC9311]
gi|113881527|gb|ABI46485.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CC9311]
Length = 436
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 203/438 (46%), Gaps = 61/438 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ++GGGF GL TAL L + +P +LL++ ++F+F P+LYELLSGE+ +WEIAP
Sbjct: 60 IIVVGGGFAGLTTALALSN----QRPRPPLLLIEPRQQFLFLPLLYELLSGEMKSWEIAP 115
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LL + DRV +N T ++ G ++ Y LVL+ G+
Sbjct: 116 SYDSLLQGRRIPHLDDRVT--------SIN-----TEQKSLQTSRGQVLNYSQLVLATGS 162
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
EP + G E A F +L D + ++ L R +L+ +VG G +GVELA
Sbjct: 163 EPDDFGIAGVKEHALTFHSLLDIPPLKERVHSLCNRAAKDGALV---IVGAGATGVELAC 219
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
+S+ L+ V + + +I NRE A K L R V L RV
Sbjct: 220 KLSDMLKGSAAVHLVELGDSILSRSRAFNREQAQKALDQRGVHRHLNT------RVTSLS 273
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381
A+ Q + +P Q D ++WT G+KP+LP + P
Sbjct: 274 ANAVQLLTNDLP------------------------QSLNHDGLIWTAGTKPVLPTLSPN 309
Query: 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441
P RG D+ L + P + LGD ++ D+ P P +AQ A QQ A
Sbjct: 310 -------PTRERGLLCVDDGLQLTTDPNVVVLGDVASHNDADA-PWPRSAQSALQQGAAA 361
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 501
L A + + F+FQ+LGEM+ LG DA+++ G+TL GP+ + R+L YL R
Sbjct: 362 ARTLQAIRRGQAVPSFQFQDLGEMLSLGMGDASITGM---GLTLAGPLAYRMRRLTYLAR 418
Query: 502 LPTDEHRLKVGVSWLTKS 519
+P L+ +WL S
Sbjct: 419 MPGLSLSLRSAGAWLVHS 436
>gi|427417211|ref|ZP_18907394.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
gi|425759924|gb|EKV00777.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
Length = 401
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 213/432 (49%), Gaps = 67/432 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGGFGGLYTAL L+ ++ + + L++ E+F+F P+LYE+L+ E+ WE+
Sbjct: 19 PRIVIVGGGFGGLYTALYLQK--YRHLRDSSITLIEPREQFLFTPLLYEVLTEELLLWEV 76
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP + LL T VQ+ +D +DH+ + V+L G + YD+LV+S
Sbjct: 77 APSYQSLLMGTNVQWQQDW------ADHIDLEQQ-------RVMLRQGDSLPYDYLVVST 123
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
GA+ + +PG E A F +L+D V +L +L R + V V+G G SGVEL
Sbjct: 124 GAKTRSLPIPGIREHAITFRSLDDVVTVKARLDQLVRAAHP----VAVTVIGAGASGVEL 179
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A V++RL +KG V+ ++ I G + A+ L R V ++L
Sbjct: 180 ATKVADRLGQKGQVRLVDRGNQILKPFPKGLQRQAMDALLQRNVDVLL------------ 227
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
I ++ P GL+ + L LW G++P + +
Sbjct: 228 ----------------------QTQINQVGPTTVGLDEGQVPSHLTLWATGTEP-VEWLG 264
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439
PP + N +GQ TL ++ + +F +GD +A +P+P TAQ A+Q A
Sbjct: 265 PP------VRTNDQGQVWVRSTLQLEDYFNVFVVGDVAA----QPKPIPNTAQAAYQAAA 314
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 499
NL R FR+ +LG+M+ LG+ A V SF G++L G +G R+ Y+
Sbjct: 315 AVASNLAYMTRQRQPKSFRYLHLGDMLALGKGTAGVW-SF--GISLGGKLGGIIRRAVYI 371
Query: 500 IRLPTDEHRLKV 511
RLPT+ HRLKV
Sbjct: 372 HRLPTNRHRLKV 383
>gi|126658973|ref|ZP_01730115.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
gi|126619771|gb|EAZ90498.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
Length = 473
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 140/464 (30%), Positives = 202/464 (43%), Gaps = 67/464 (14%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L + ++L+D ERFVFKP+LYE L+GE+ ++ P
Sbjct: 9 IIVGGGFVGLFTALHLSHRHYPHP----IILIDPQERFVFKPLLYEYLTGEMQDEQVFPS 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ +LL + V F +D V + + L SGL Y LVL +G
Sbjct: 65 YKELLEGSNVTFVQDTVTTIELQQQ-------------QITLASGLNYHYRHLVLGVGNI 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG------KDSLIRVAVVGCGYSG 256
GA E AFPF T EDA ++R L + ++ +D L+ +AVVG G SG
Sbjct: 112 QGYFGTEGAKENAFPFRTQEDAINLERHLRDCLQKACQTENAQERDRLLTIAVVGAGPSG 171
Query: 257 VELAATVSERLE----------EKGIVQAINVETTICPTGTPGN-REAALKVLSARKVQL 305
VE+AAT+++ L +K + IN T I + RE AL+ L++R V +
Sbjct: 172 VEMAATLADLLPSWYGKLGGNIQKIKIVLINHGTEILSGDVNAHLRETALEALNSRSVPV 231
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
L V+ IA D N+ Y + I+ L +Q
Sbjct: 232 ALRLGVKV---------------------IAVDANNLNYQQKDHQDIEQLSTQT-----T 265
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+WT G+ P +E + L D N G TL + P +FA GD + + +
Sbjct: 266 IWTAGTA-TNPLIESLGDSLGDHK-NKHGLPFVTSTLQLSEFPEVFAAGDCAVVEE---H 320
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
P P AQ+A+QQ NL A + L P G +M LG N+ E + +
Sbjct: 321 PFPPVAQIAYQQGADIADNLMALSQGKKLQPADPSMRGTLMKLGINNGVA--DLFEKIQV 378
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQS 529
G G R YL LPT H K +WLT ++ Q+
Sbjct: 379 TGKAGDLIRNGTYLELLPTPVHNFKATTNWLTDEIFHHHSVPQT 422
>gi|411120814|ref|ZP_11393186.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410709483|gb|EKQ66998.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 475
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 215/461 (46%), Gaps = 88/461 (19%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L Q+ ++P V+L++ +RF FKP+LYELLSGE+ ++ PR
Sbjct: 9 VIVGGGFVGLFTALHLSR---QNYQRP-VILIEPHDRFSFKPLLYELLSGELHVQQVHPR 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ DLL+N+ V +D+V+ +N P V+L SG EY LVL+LG++
Sbjct: 65 YIDLLSNSHVTLVQDKVQ--------SINLPQR-----QVVLASGKHYEYGNLVLALGSK 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------ELERRNFGKDSLIRVAVVGC 252
PGA E+ P ++ +A + L + ERR L+ VA++G
Sbjct: 112 TAYLNTPGAVEYTMPLTSGTEAIALRDHLKYCLHSAAQTLDAERRRL----LLTVAIIGA 167
Query: 253 GYSGVELAATVSERL----EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
G +G+ELA T+ + L E+ G G+ + VL R +L+ G
Sbjct: 168 GPAGIELACTLGDLLPLWYEDLG-----------------GDGDEVRVVLFNRSRELLKG 210
Query: 309 YF---VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQI---FE 361
+RC + S++Q A+P + D + +QP A++ + ++ +
Sbjct: 211 DINSRLRC-----RVQRSLRQ---RAVP---VELVFDATVKAIQPDAVEYEQHEVLHSLK 259
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPL-----NARGQAETDETLCVKGHPRIFALGDS 416
A + WT G+ P+ L +LP+ + RG+ TL + P +FA GD
Sbjct: 260 AGTIAWTAGTA--------PHPLLMNLPVAPEHRDRRGRLLVTPTLQLPDFPDVFAAGDC 311
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ P P TAQVA+QQ NL A + P LP G +M LG N+
Sbjct: 312 AT---PDANPQPPTAQVAYQQGKAIAHNLQAIATNNPPLPVIIHLRGTLMKLGLNEGVA- 367
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+ V + G GH R+ YL LP+ H K+ WLT
Sbjct: 368 -NLFNKVEIKGQPGHLIREATYLELLPSPIHNAKITADWLT 407
>gi|428316353|ref|YP_007114235.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillatoria nigro-viridis PCC 7112]
gi|428240033|gb|AFZ05819.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillatoria nigro-viridis PCC 7112]
Length = 490
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 212/485 (43%), Gaps = 105/485 (21%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILGGGF GL+TAL L + V+L+D SERF FKP+LYE SGE+DA ++
Sbjct: 7 QTVILGGGFAGLFTALHLA----HEHYPRSVILIDSSERFCFKPLLYEYFSGEMDANQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F +LL ++G+ F +D V+ + H V L SG Y LVL+LG
Sbjct: 63 PTFKELLEDSGIIFVQDTVQSI-------------DLHEREVKLTSGDCYNYSNLVLALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF------GKDSLIRVAVVGCGY 254
+ V GA E+AF F T E+A +DR L + +R + L+ VA +G G
Sbjct: 110 SVTGYFGVEGAKEYAFDFRTQENAIALDRHLRDCLQRAVQIEDPEQRRRLLTVAAIGGGP 169
Query: 255 SGVELAATVSERL-----------EEKGIVQAINVETTICPTGTPGN-REAALKVLSARK 302
SGVE+AAT+ + L +E +V IN I + RE A + L R
Sbjct: 170 SGVEMAATLGDLLPHWYEALGGNPQEVRVV-LINHGNEILKGDINSHLRETAEQELQKRA 228
Query: 303 --VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
V+L+ G IRR SV+ G +S+I
Sbjct: 229 VPVELIAGAEATAIRR-----DSVEYKRDG-------------------------KSEIL 258
Query: 361 EADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
A +WT G + PL+ ++ P+ + G+ TL + P +FA GD +
Sbjct: 259 SASTAIWTSGTATHPLIKNLPIPDEH-----RDKHGRLHVTPTLQLPDFPEVFAGGDCAV 313
Query: 419 LRDSS--------------------------GRPLPATAQVAFQQADFAGWNLWA-AIND 451
SS +PLPATAQVA+QQ NL A A+
Sbjct: 314 DVQSSTVEGHEYKHIELHPELISYSSEPHKDTKPLPATAQVAYQQGAAIAHNLKAIALGH 373
Query: 452 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 511
P P + G ++ LG ++A + + V + G +GH R+ YL LPT H KV
Sbjct: 374 EP-KPAQVNLRGTLLKLGLENSAA--NIYDVVEVTGEVGHLIRQGTYLELLPTPVHNFKV 430
Query: 512 GVSWL 516
WL
Sbjct: 431 TTDWL 435
>gi|260436823|ref|ZP_05790793.1| NADH dehydrogenase, fad-containing subunit [Synechococcus sp. WH
8109]
gi|260414697|gb|EEX07993.1| NADH dehydrogenase, fad-containing subunit [Synechococcus sp. WH
8109]
Length = 425
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 202/427 (47%), Gaps = 71/427 (16%)
Query: 92 LYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
L+TAL L+ ++P ++L++ +RF+F+P+LYELLS E+ +WE+APR+ D L N
Sbjct: 65 LFTALALQR------RQPNCPIVLIEPRDRFLFQPLLYELLSDELQSWEVAPRY-DQLLN 117
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
G+ + KD V +G++ ++ L SG + + LVL+ G++ +P
Sbjct: 118 NGICWIKDSV--------VGID-----QTSQSIELASGDHLGWSQLVLATGSKANDFGIP 164
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
G E + F L D R+ + L+ L + G+ LI +VG G +GVELA +++ ++
Sbjct: 165 GVKEHSSGFRDLNDVSRLKQWLNSLHHQRDGEAGLI---IVGAGPTGVELACKLADLIDG 221
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
++ + + I P + NRE A L + G V+ V E ++S
Sbjct: 222 AASIRLVEMGDEILPGSSAFNRERAQAALERK------GVVVQLNTSVSEVKSSTAVLAD 275
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389
GA+ ++WT GS+P +P + P P
Sbjct: 276 GAVLRHVG---------------------------LIWTAGSRPSIPAISP-------TP 301
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449
+ RG+ D+ L + G FALGD SA G P PA+AQVA QQ D +
Sbjct: 302 VLERGRLAVDDDLRLVGCANTFALGDLSA---RPGSPWPASAQVAMQQGDATAAAIAKLR 358
Query: 450 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
+ PF+F++ GEM+ LG +A ++ G+TL GP+ R+ YL RLP L
Sbjct: 359 VEEEPQPFQFEDRGEMLSLGVGEATLTGM---GLTLAGPLAFQLRRATYLTRLPGLSLGL 415
Query: 510 KVGVSWL 516
+ +WL
Sbjct: 416 RSAGAWL 422
>gi|33866697|ref|NP_898256.1| NADH dehydrogenase, transport associated [Synechococcus sp. WH
8102]
gi|33633475|emb|CAE08680.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. WH 8102]
Length = 382
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 205/447 (45%), Gaps = 70/447 (15%)
Query: 72 YTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLS 131
T P + ++GGGF GL++AL + + ++P VLL++ +RF+F+P+LYELLS
Sbjct: 1 MTTPLSSPETVVVIGGGFAGLFSALAVSERL---PERP-VLLIEPRDRFLFQPLLYELLS 56
Query: 132 GEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
E+ WE+AP + LL++ G+ + +DRV ++ +N T L +
Sbjct: 57 SELQGWEVAPTYRQLLSSRGICWLQDRVI------NIDLNNQELTTAASGAL-------Q 103
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
+ LVL+ G E VPG E A F L D + + EL +R ++ VA++G
Sbjct: 104 WGDLVLATGTELNDFGVPGVREHACSFRDLNDVAHLRALVRELNKR---REPDAAVAIIG 160
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA +++ L+ + I I P NRE A L R V L L V
Sbjct: 161 AGPTGVELACKLADMLDGAARIHLIERGDGILPNSASFNRERAAAALERRDVCLHLNTAV 220
Query: 312 RCIR--RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ RV F+ P SG I W+
Sbjct: 221 TEVHSDRV-RFKDGTLLPHSGLI----------------------------------WSA 245
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
GS+P +P + P P +A+G + L + GH ++ LGD S P PA
Sbjct: 246 GSRPTVPEIRPD-------PGHAKGPLNIGQDLRLLGHQHVYVLGDCG---RCSVEPWPA 295
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 489
TAQVA QQ + L A N++ PF+FQ+ GEM+ LG DA ++ G+TL GP+
Sbjct: 296 TAQVAMQQGEAVAAALQAISNNQEPKPFQFQDRGEMLSLGIGDATLTGL---GITLAGPL 352
Query: 490 GHSARKLAYLIRLPTDEHRLKVGVSWL 516
R+ YL RLP L+ +WL
Sbjct: 353 AFKIRRATYLTRLPGLSLGLRSAGAWL 379
>gi|72383282|ref|YP_292637.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. NATL2A]
gi|72003132|gb|AAZ58934.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. NATL2A]
Length = 390
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 188/393 (47%), Gaps = 55/393 (13%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
++L+DQS RF+FKP+LYELLSGE+ WE+AP+++ L + G F ++ C + G+
Sbjct: 36 IILIDQSPRFLFKPLLYELLSGELQLWEVAPKYSALASELGFIFLEE-----CVVEVDGL 90
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ + SG V Y LV+S G ++ E+A+ FS+L D R+
Sbjct: 91 ERKLITS--------SGTEVTYSQLVISTGVTTDFSLLRNLKEYAYGFSSLNDLVRIQEL 142
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGN 290
+ + + D LI + G G +GVELA +S+ + + + ++ I N
Sbjct: 143 IISINNSSNHSDPLI---IAGAGPTGVELACKLSDLVNNRVDIYLVDKGNKILSKSKSFN 199
Query: 291 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350
RE A+ ++ R +++ L ++++ I E ++ + + ++N+ L+
Sbjct: 200 REKAIDAIAERNIKIYLEHYIQSIN-----ENIIE------LSTVETERNNS-----LKI 243
Query: 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 410
GL LWT G + P + D L+ + + ++ L +K + I
Sbjct: 244 NYSGL----------LWTAG-------LSPCRLQFIDHLLDENKKIKVNKFLQIKEYQNI 286
Query: 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
F +GD D P P++AQVA QQ N+ + L F+F++LGEM+ LG
Sbjct: 287 FFVGDIVFCEDD---PFPSSAQVAMQQGFLTAQNIISLRKGNKLKSFQFEDLGEMLSLGI 343
Query: 471 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 503
+A+++ GVTL G + R AYL+R+P
Sbjct: 344 GNASITGY---GVTLAGSLAFKIRHFAYLMRMP 373
>gi|172039319|ref|YP_001805820.1| NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|354552414|ref|ZP_08971722.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
gi|171700773|gb|ACB53754.1| probable NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|353555736|gb|EHC25124.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
Length = 415
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 212/452 (46%), Gaps = 72/452 (15%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
I+GGGF GL+TAL L+ + D ++L+DQ+ERF+FKP+LYELLSGE+D +++ PR+
Sbjct: 10 IIGGGFVGLFTALHLQQQNYPDP----IILIDQTERFIFKPLLYELLSGEMDDFQVCPRY 65
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
LL VQF D V+ ++ P T+ L+SG I YD LV+ LG+
Sbjct: 66 DKLLDPEKVQFICDTVE--------AIDLPQ-----NTLTLKSGTICNYDKLVIGLGSCS 112
Query: 204 KLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDS-----LIRVAVVGCGYSGV 257
+ GA E F T +DA + + L + L+R + +DS L+ VA+VG G SGV
Sbjct: 113 SYFGIEGAKEHTLSFRTRQDAITLKQHLQQCLQRGSEIQDSQQRRHLLTVAIVGAGPSGV 172
Query: 258 ELAATVSERL----EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
ELAAT+++ L ++G GN VL + ++ G
Sbjct: 173 ELAATLADSLPQWYHQRG-----------------GNWAEIRLVLLNQDENILQGDINTE 215
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADLVLWTVGSK 372
+R+ + + K+ + N + K + + + Q ++ EA ++WT G++
Sbjct: 216 LRQAAKTALTDKKVSVELLLNASVTKVQPRQLYYQYQE-----QTHTLEAATIVWTAGTQ 270
Query: 373 --PLLPHVEPPNNRLHDLPL-----NARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
PL +H LP+ + +G+ TL + P +F GD + + +
Sbjct: 271 THPL----------IHSLPIPESHRDKQGRLLLAPTLQLPHFPNVFVGGDCATILN---H 317
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
PLP AQVA+Q+ NL A +++ G ++ LG +D+A + +
Sbjct: 318 PLPPLAQVAYQEGTAIAQNLQALAHNQKPTHAEVDIKGSLLKLGLDDSAA--QLFDQFVV 375
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
G + R+ YL LP H K WL+
Sbjct: 376 TGKSAYLIRQGRYLTLLPAPGHDFKATTEWLS 407
>gi|124024860|ref|YP_001013976.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. NATL1A]
gi|123959928|gb|ABM74711.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. NATL1A]
Length = 413
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 117/424 (27%), Positives = 204/424 (48%), Gaps = 66/424 (15%)
Query: 98 LESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157
+++L+ + + P ++L+DQS RF+FKP+LYELLSGE++ WE+AP+++ L + G F ++
Sbjct: 47 VQALLARSNGMP-IILIDQSPRFLFKPLLYELLSGELELWEVAPKYSALASELGFIFLEE 105
Query: 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP 217
C + G+ + + SG V+Y LV+S G ++ E+A+
Sbjct: 106 -----CVVEVDGLERKLITS--------SGTKVKYSQLVISTGVTTDFSLLRDLKEYAYG 152
Query: 218 FSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAIN 277
FS+L D R+ + + + + LI + G G +GVELA +S+ + + + ++
Sbjct: 153 FSSLNDLVRIQELIISINNSSNHSNPLI---IAGAGPTGVELACKLSDLVNNRVEIYLVD 209
Query: 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 337
I NRE A+ ++ R +++ L +++ I E +++ + +
Sbjct: 210 KGNKILSKSKSFNREKAIDAIAERNIKIYLEHYIESIN-----ENTIE------LSTVET 258
Query: 338 DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL-LPHVEPPNNRLHDLPLNARGQA 396
++N+ L+ GL LWT G P LP + D L+ +
Sbjct: 259 ERNNS-----LKINYSGL----------LWTAGLSPCRLPFI--------DHLLDENKKI 295
Query: 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456
+ ++ L +K + IF +GD D P P++AQVA QQ N+ + L
Sbjct: 296 KVNKFLQIKEYQNIFFVGDIVFCEDV---PFPSSAQVAMQQGSLTAQNIISLRKGNKLKS 352
Query: 457 FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
F+F++LGEM+ LG +A+++ GVTL G + R AYL+R+P G S
Sbjct: 353 FQFEDLGEMLSLGIGNASITGY---GVTLAGSLASKIRHFAYLMRMP--------GFSLF 401
Query: 517 TKSA 520
KSA
Sbjct: 402 LKSA 405
>gi|186682194|ref|YP_001865390.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Nostoc
punctiforme PCC 73102]
gi|186464646|gb|ACC80447.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Nostoc
punctiforme PCC 73102]
Length = 456
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 202/458 (44%), Gaps = 80/458 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+TAL L + V+L+D+ ERF FKP+LYE GE+D +++
Sbjct: 7 QTVIVGGGFTGLFTALHLA----HEHYPRSVILIDKDERFCFKPLLYEYFDGEMDTFQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF++LL +GV F +D V+ + H V L SG Y LVL+LG
Sbjct: 63 PRFSELLKGSGVIFVQDTVQSI-------------NLHQREVKLASGNSYNYSNLVLALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDS------LIRVAVVGCGY 254
+ V GA E AFPF T DA +DR L + ++ + L+ V +VG G
Sbjct: 110 SVTGYHQVEGARENAFPFWTQADAIALDRHLRDCLQKAVQTEDVEQRRKLLTVVIVGGGA 169
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
SGVE+AAT+++ L + GN VL +++ G +
Sbjct: 170 SGVEMAATLADFLPH-------------WYSALGGNSSEIRVVLLNHGKEILDGDINNPL 216
Query: 315 RRVGEFEAS--------VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
R + E E + + + E+ AI + + ++ I + +
Sbjct: 217 REIAERELNKRAVPIEMIVEAEATAIGSTSIQYKRNEQI------------ETLATHTTV 264
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG-----HPRIFALGDSSAL 419
WT G + PL+ DLP+ + D L P +F GD +A+
Sbjct: 265 WTAGTSTHPLIK----------DLPIPKEHRDRRDRPLVTPNLQLLDFPEVFVGGDCAAV 314
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
+D+S LP TAQVA+QQ NL A A+ + P P + G ++ LG NDAA +
Sbjct: 315 QDNS---LPPTAQVAYQQGANIAQNLKALALGEEP-KPAKVNIRGTLLKLGINDAAANLF 370
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
V V G H R+ YL LP H K W+
Sbjct: 371 NVFEVV--GETAHLIRQGTYLTLLPAPIHDFKATTEWV 406
>gi|352096090|ref|ZP_08957037.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Synechococcus sp. WH 8016]
gi|351677446|gb|EHA60595.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Synechococcus sp. WH 8016]
Length = 382
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 202/438 (46%), Gaps = 61/438 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ++GGGF GL TAL L + +P +LL++ +F+F P+LYELLSGE+ +WE+AP
Sbjct: 6 IIVVGGGFAGLTTALALSN----QRPRPPLLLIEPRHQFLFLPLLYELLSGEMKSWEVAP 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LL + DRV +N T ++ G +++Y LVL+ G+
Sbjct: 62 SYESLLQGRRIPHLDDRVT--------SIN-----TAQKSLQTSRGQVLKYSQLVLATGS 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261
EP + G E A F +L D + ++ L R +L+ +VG G +GVELA
Sbjct: 109 EPDDFGITGVKEHALTFHSLADLPLLKERVHSLRNRASKDGALV---IVGAGATGVELAC 165
Query: 262 TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321
+S+ L+ + + + ++ NRE A K L R V L RV
Sbjct: 166 KLSDMLDGSANIHLVELGDSVLSRSRAFNREQARKALDQRGVHRHLNT------RVTSVS 219
Query: 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381
A+ Q +K Q D ++WT G+KP+LP + P
Sbjct: 220 ANAVQ------------------------LLKNDRPQSLNHDGLIWTAGTKPVLPPLTPT 255
Query: 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441
R RG DE L + P + LGD + D+ P P +AQ A QQ A
Sbjct: 256 PPR-------ERGLLCVDEGLQLTTDPNVLVLGDVACHNDAE-TPWPRSAQAALQQGTAA 307
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 501
L A D+P+ F FQ+LGEM+ LG DA+++ G+TL GP+ + R+L YL R
Sbjct: 308 ARTLQAIRMDKPVPGFHFQDLGEMLSLGIGDASITGM---GLTLAGPLAYRMRRLTYLAR 364
Query: 502 LPTDEHRLKVGVSWLTKS 519
+P L+ +WL S
Sbjct: 365 MPGLSLGLRSAGAWLVHS 382
>gi|298491788|ref|YP_003721965.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
gi|298233706|gb|ADI64842.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
Length = 455
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 204/450 (45%), Gaps = 64/450 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+TAL L + V+L+D+++RF FKP+LYE GE+++ ++
Sbjct: 7 QTVIVGGGFTGLFTALHLA----HEHYPRSVILIDKNKRFCFKPLLYEYFDGEMNSSQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F++LL +GV F +D V+ + H V L SG +Y LVL+LG
Sbjct: 63 PHFSELLKCSGVIFVQDIVQSI-------------DLHQSEVELASGNSYKYSNLVLALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD------SLIRVAVVGCGY 254
+ V GA E AFPF T DA +DR L + ++ + L+ V +VG G
Sbjct: 110 SVTGYPHVEGAKENAFPFWTQADAIALDRHLRDCLQKAIQTEDVEQRRKLLTVVIVGGGP 169
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL-GYFVRC 313
SGVE+AAT+++ L G G A ++V+ Q +L G
Sbjct: 170 SGVEMAATLADFLPHW--------------YGVLGGSSAEIRVILLNHGQKILDGDINDP 215
Query: 314 IRRVGEFEASVKQPESGAIPNIAA---DKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+R + E E + E G I A N+ +Y + ++ L + +WT G
Sbjct: 216 LRPIAETELQKRTVEIGIILEAEATVVHPNAVEY--KSHGEVRKLPTYT-----TIWTAG 268
Query: 371 --SKPLLPHVEPPNNR--LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
+ PL+ + P H PL T+ + P +FA GD +A+++SS
Sbjct: 269 TSTHPLIQDLPIPQEHRDHHRRPL-------VTPTMQLLDFPEVFAGGDCAAVQNSS--- 318
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
LP TAQVA+Q NL A + P + G M+ LG NDAA + +
Sbjct: 319 LPPTAQVAYQHGANIARNLTALALGKDPKPVKVDIRGTMLKLGLNDAAA--NLFNIFEVA 376
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G H R+ YL LPT H K WL
Sbjct: 377 GEPAHLIRQGTYLTLLPTPIHNFKATTEWL 406
>gi|443324636|ref|ZP_21053376.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
gi|442795762|gb|ELS05109.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
Length = 412
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 131/451 (29%), Positives = 205/451 (45%), Gaps = 66/451 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFKPMLYELLSGEVDAWEI 139
+ I+GGGF GL+T L L K PQ V L+DQ + F+F P+LYEL++GE+ ++
Sbjct: 3 KTIIIGGGFVGLFTVLHL-----CHHKYPQSVTLIDQKDHFIFNPLLYELMTGEMTPDQV 57
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P + +LL + FF+D+V + + L S +YD LVL+L
Sbjct: 58 CPTYRELLKGSSATFFEDQVDRIDLEQR-------------KIYLSSDTHYDYDNLVLAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LER-----RNFGKDSLIRVAVVGCG 253
G + + GA +AFPF +DA ++ + L + L++ + + L+ +VG G
Sbjct: 105 GKKSGYFGIEGAENYAFPFRNRDDALKLSQHLQKSLQKAGQTEEDKSRQRLLTFTIVGGG 164
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+G+E+A T+++ L + GN E +L +R +L+ G
Sbjct: 165 PTGIEMAGTLADLLYR-------------WYSKIGGNLEEIKILLVSRPKELLKGDINAH 211
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK- 372
+R + + +A +P + A+ +E Q K E+ E + V+W G++
Sbjct: 212 LRDIVK-KAFQHRPIKIDLILGASVSKVTASTVEYQ---KEEETHSIETNTVIWAAGTQT 267
Query: 373 -PLL------PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
PLL P N LH LP TL + +P +FA GD S
Sbjct: 268 NPLLRSLNIAPENRAKNGSLHILP-----------TLQLPEYPNVFAAGDCIF---QSEL 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
LP TAQVA+QQ NL A + L P + G MM LG N++A + + +
Sbjct: 314 HLPPTAQVAYQQGKAIANNLIAKVKGNSLKPAEVKLRGSMMKLGINESAA--NIFDRFEV 371
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G +GH R+ YL LPT H KV +W+
Sbjct: 372 SGEVGHLIREATYLELLPTPIHDFKVTTTWI 402
>gi|33239548|ref|NP_874490.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33237073|gb|AAP99142.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 394
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 188/413 (45%), Gaps = 61/413 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++P ++L++ S RF F P+ YELLSGE++ WE+AP + LLA+ G+ V D
Sbjct: 32 QRPPIILIEPSSRFNFLPLFYELLSGELEVWEVAPFYKTLLASKGIVLIDQFV------D 85
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
++ ++ + T G V ++Y LV++ G++ + G E F+ +D
Sbjct: 86 NIDLDKEVVSTSAGQV-------IKYGQLVIATGSKLNSFGISGVNEHCLKFNKYQDVLT 138
Query: 227 VDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG 286
+ R + L N + +L+ +VG G +GVELA V++ ++ + + I V I P G
Sbjct: 139 LKRVIRRLNHSNENRQNLV---IVGAGATGVELACKVADLVDARTEIHLIEVGENILPKG 195
Query: 287 TPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI 345
N+E + + R + L L V + + E ++ KQ
Sbjct: 196 RSFNQEQIQEAIRKRSINLHLNTNVLKVLENNVEIQSLSKQ------------------- 236
Query: 346 LELQPAIKGLESQIFEADL--VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
SQ F + ++WT G K +P P L G+ D L
Sbjct: 237 ----------HSQPFSLNHSGIIWTAGVKSAIPSGLPE-------TLIRNGRVAIDSKLQ 279
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
+ G +F++GD + +++ P TAQVA QQ + N+ AA + L PF F + G
Sbjct: 280 IIGRNNVFSIGDMAIDQEN---PCLGTAQVAMQQGEHLAKNVIAARQGKDLTPFEFVDRG 336
Query: 464 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
EM+ +G +A ++ G+T+ G I R++AYL + P ++ SWL
Sbjct: 337 EMLSMGIGEATITGM---GLTISGSIAFKMRRMAYLSKFPNLFLSIRSAGSWL 386
>gi|300866304|ref|ZP_07111009.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Oscillatoria sp. PCC 6506]
gi|300335701|emb|CBN56169.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Oscillatoria sp. PCC 6506]
Length = 491
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 143/461 (31%), Positives = 206/461 (44%), Gaps = 58/461 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+TAL L + ++L+D SERF FKP+LYE SGE+DA ++
Sbjct: 13 QTVIVGGGFTGLFTALHL----AHEHYPRSIILIDSSERFCFKPLLYEYFSGEMDANQVV 68
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF +LL ++G+ F +D V+ + V L SG Y LVL+LG
Sbjct: 69 PRFEELLKDSGIIFVQDTVQSIDLEQR-------------EVKLTSGTNYNYSNLVLALG 115
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF------GKDSLIRVAVVGCGY 254
+ V GA E+AF F T E+A +DR L + +R + L+ VA +G G
Sbjct: 116 SVTGYFGVEGAKEYAFDFRTQENAIALDRHLRDCLQRAVQIEDPEQRRRLLTVAAIGGGP 175
Query: 255 SGVELAATVSERL-----------EEKGIVQAINVETTICPTGTPGN-REAALKVLSARK 302
SGVE+ AT+++ L +E +V IN I + RE A + L R
Sbjct: 176 SGVEMVATLADLLPNWYEALGGNPQEVRVV-LINHGNEILKGDINSHLRETAEQELEKRA 234
Query: 303 --VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
V+L+ G IRR SV+ G ++A P IK L
Sbjct: 235 VPVELIAGAEATAIRR-----DSVEYKRDGKSEILSASTTIWTTGTATHPLIKNLPIPNE 289
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD-ETLCVKG----HPRIFALGD 415
D G + P ++ P+ L + A G D + V+G H +
Sbjct: 290 HRD----RDGRVHVTPTLQLPDF----LEVFAGGDCAVDVQASTVEGREYEHLELHQDSI 341
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
S++ +PLP TAQVA+QQ NL A L P + G ++ LG ++A
Sbjct: 342 SNSSEPHETKPLPPTAQVAYQQGATIAHNLKAMALGHELKPAQVNLRGTLLKLGLENSAA 401
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + + G +GH R+ YL LPT H LKV WL
Sbjct: 402 --NIYDVFEVKGEVGHLIRQGTYLELLPTPLHNLKVTTDWL 440
>gi|116071421|ref|ZP_01468690.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. BL107]
gi|116066826|gb|EAU72583.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. BL107]
Length = 382
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 192/411 (46%), Gaps = 70/411 (17%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
V+L++ + F+F+P+LYELLS E+ WE+AP+++ L+++ G+ + +D V + S+H
Sbjct: 35 HVVLIEPRKEFLFQPLLYELLSHELQEWEVAPQYSQLVSHNGICWLQDEVLSIDRSNH-- 92
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
T+ SG + + LV++ G++P +PG E + F L D + +
Sbjct: 93 -----------TLQTRSGERIPWRQLVIATGSQPNDFGIPGVKEHSRGFRNLSDVRELRQ 141
Query: 230 KLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPG 289
++ +L + +L A+VG G +GVEL+ +++ L + I +I P +
Sbjct: 142 RIQDLVHQRRADAAL---AIVGAGPTGVELSCKLADLLNGTARIHLIEKGDSILPNSSAF 198
Query: 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
NRE A L + V L L V A +D+ +
Sbjct: 199 NRERASAALERKDVCLHLNTDV-------------------------ARVEADRVVFA-- 231
Query: 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 409
KG E E ++WT GS+ LP V+P LP + RG+ + L ++
Sbjct: 232 ---KGEE---IEHQGLIWTAGSQVNLPSVQP-------LPKSHRGRLTINADLRLQDSCD 278
Query: 410 IFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
+FA+GD ++ D P PA AQVA QQ + G + A F FQ+ GEM+ LG
Sbjct: 279 VFAIGDIASNGD---HPAPANAQVAMQQGEAVGDAIAALQAGEEPQTFEFQDRGEMLSLG 335
Query: 470 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV----SWL 516
DA ++ G+TL GP+ R+ YL R+P L VGV +WL
Sbjct: 336 IGDATLTGL---GITLAGPLAFQLRRATYLTRMPG----LSVGVRSAGAWL 379
>gi|416396972|ref|ZP_11686523.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
gi|357262854|gb|EHJ11932.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
Length = 412
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 207/460 (45%), Gaps = 84/460 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLL-VDQSERFVFKPMLYELLSGEVDAWEI 139
R ++GGGF GL+T L L K PQ L +D + FVF P+L+EL++GE+ ++
Sbjct: 3 RTIVVGGGFVGLFTVLHL-----YHHKYPQSLFFIDNKDHFVFNPLLFELMTGEMTPDQV 57
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P + +LL + + F +D+V + D L V L S + +YD LVL+L
Sbjct: 58 CPLYRELLKGSPITFLEDQVTQI---DLL----------EKKVYLASDIHYDYDNLVLAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR------NFGKDSLIRVAVVGCG 253
G + V GA E+AFPF T EDA + + L + ++ + +L+ A+VG G
Sbjct: 105 GRKAGFFRVEGAQEYAFPFKTKEDAETLRQHLQQCLKKASQTEDETTRKTLLTFAIVGGG 164
Query: 254 YSGVELAATVSERLEE--KGIVQAINVETTICPTGTPGN----------REAALKVL--S 299
+G+E+A T+ + L + + Q+ E I P REA + S
Sbjct: 165 PTGIEMAGTLGDLLANWYQKLDQSAQ-EIRILIINRPQELLQGDINVHLREAVSQAFAKS 223
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
+ ++L+LG V + P+S + ++N ++
Sbjct: 224 SISIELILGASVTKVT-----------PDS-----VTYEQNG--------------QTLT 253
Query: 360 FEADLVLWTVG--SKPLLPHVE-PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
E + +W+ G + PL+ ++ P NR G + TL + P +FA GD
Sbjct: 254 IETNTTIWSAGTATNPLIENLAISPENR------TKNGSLKVLPTLQLPEFPEVFAAGDC 307
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ L S PLPATAQVA+QQ NL A I L P + + G MM LG +
Sbjct: 308 TML---SSDPLPATAQVAYQQGKAIAHNLNAMIKGHSLTPAQVKLRGSMMKLGIEKSVA- 363
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + + G GH R+ YL LPT H KV +W+
Sbjct: 364 -NIFDRFEVTGHSGHLIREGTYLQLLPTPIHDFKVTTNWI 402
>gi|16332182|ref|NP_442910.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451816334|ref|YP_007452786.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|1653811|dbj|BAA18722.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451782303|gb|AGF53272.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
Length = 524
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 202/462 (43%), Gaps = 76/462 (16%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L ++LV+ FVFKPMLYELL+ E+ + P
Sbjct: 49 VIIGGGFVGLFTALHLR----HHQHAGPIVLVEPQANFVFKPMLYELLTEELPESVVCPS 104
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ LLA++G+ + RV + + ++L+SG YD+LVL++G+
Sbjct: 105 YEKLLADSGIDIVQARVADVQLKEK-------------RLVLDSGQEQHYDYLVLAVGSV 151
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG------KDSLIRVAVVGCGYSG 256
GAAE AF F + +A + L ++ K+ L+ VA+VG G +G
Sbjct: 152 QGYLGAQGAAENAFAFRSQTEAIALRDHLKACLEKSLTTADQAEKERLLTVAIVGAGPAG 211
Query: 257 VELAATVSERLEEKGIVQAINVET-----------TICPTGTPGNREAALKVLSARK--V 303
VE+AAT+++ L + N+ + G + AL+ L AR V
Sbjct: 212 VEMAATLADLLPSWYVPMGGNINDLKIYLVNHAPGILAGDANSGLKRCALEELQARTIPV 271
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEA 362
L LG V+ + PES LQ G E + +
Sbjct: 272 TLKLGVGVKSVT-----------PES------------------LQFVETGEEELRHLDT 302
Query: 363 DLVLWTVGS--KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+WT G+ PLL ++ ++ L+ GQ TL + P++FA GD ++
Sbjct: 303 GTTIWTAGTAVNPLLKTLK---EQIPAEELDRHGQPLVTSTLQLPSFPQVFAAGDCVTVK 359
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
D+ P PA AQ+A+QQ NL A N +PL+ Q G +M LG N+ +
Sbjct: 360 DN---PKPALAQIAYQQGAAIAKNLMAVHNGKPLVSPDPQLRGTLMKLGLNNGVA--NLF 414
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
+ V + G G R YL LPT H K WL + ID
Sbjct: 415 DRVRIQGKAGDLLRNATYLELLPTPLHNFKSTTQWLAEETID 456
>gi|383323925|ref|YP_005384779.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383327094|ref|YP_005387948.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492978|ref|YP_005410655.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438246|ref|YP_005652971.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|339275279|dbj|BAK51766.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|359273245|dbj|BAL30764.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276415|dbj|BAL33933.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279585|dbj|BAL37102.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407960171|dbj|BAM53411.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
Length = 487
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 202/462 (43%), Gaps = 76/462 (16%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L ++LV+ FVFKPMLYELL+ E+ + P
Sbjct: 12 VIIGGGFVGLFTALHLR----HHQHAGPIVLVEPQANFVFKPMLYELLTEELPESVVCPS 67
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ LLA++G+ + RV + + ++L+SG YD+LVL++G+
Sbjct: 68 YEKLLADSGIDIVQARVADVQLKEK-------------RLVLDSGQEQHYDYLVLAVGSV 114
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG------KDSLIRVAVVGCGYSG 256
GAAE AF F + +A + L ++ K+ L+ VA+VG G +G
Sbjct: 115 QGYLGAQGAAENAFAFRSQTEAIALRDHLKACLEKSLTTADQAEKERLLTVAIVGAGPAG 174
Query: 257 VELAATVSERLEEKGIVQAINVET-----------TICPTGTPGNREAALKVLSARK--V 303
VE+AAT+++ L + N+ + G + AL+ L AR V
Sbjct: 175 VEMAATLADLLPSWYVPMGGNINDLKIYLVNHAPGILAGDANSGLKRCALEELQARTIPV 234
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEA 362
L LG V+ + PES LQ G E + +
Sbjct: 235 TLKLGVGVKSVT-----------PES------------------LQFVETGEEELRHLDT 265
Query: 363 DLVLWTVGS--KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+WT G+ PLL ++ ++ L+ GQ TL + P++FA GD ++
Sbjct: 266 GTTIWTAGTAVNPLLKTLK---EQIPAEELDRHGQPLVTSTLQLPSFPQVFAAGDCVTVK 322
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
D+ P PA AQ+A+QQ NL A N +PL+ Q G +M LG N+ +
Sbjct: 323 DN---PKPALAQIAYQQGAAIAKNLMAVHNGKPLVSPDPQLRGTLMKLGLNNGVA--NLF 377
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
+ V + G G R YL LPT H K WL + ID
Sbjct: 378 DRVRIQGKAGDLLRNATYLELLPTPLHNFKSTTQWLAEETID 419
>gi|78213818|ref|YP_382597.1| NADH dehydrogenase, transport associated [Synechococcus sp. CC9605]
gi|78198277|gb|ABB36042.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. CC9605]
Length = 381
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 197/427 (46%), Gaps = 71/427 (16%)
Query: 92 LYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
L+TAL L+ ++P ++L++ +RF+F+P+LYELLS E+ WE+APR+ D L N
Sbjct: 21 LFTALALQR------RQPNCPIVLIEPRDRFLFQPLLYELLSDELQGWEVAPRY-DQLLN 73
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
G+ + +D V +GV+ T+ L SG + + LVL+ G++ +P
Sbjct: 74 NGICWIQDSV--------VGVD-----LTSQTIELASGDRLGWSQLVLATGSKGNDFGIP 120
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
G E + F L D R+ + L+ L ++ LI +VG G +GVELA +++ ++
Sbjct: 121 GVKEHSSGFRDLSDVSRLKQWLNNLHQQRGEAAGLI---IVGAGPTGVELACKLTDLIDG 177
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
V+ + + I P T NRE A L + G V+ V E ++S
Sbjct: 178 AASVRLVEMGDEILPGSTAFNRERAQAALERK------GVVVQLNTSVSEVKSSTAVLAD 231
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389
GA+ + A LV WT GS P + P
Sbjct: 232 GAV--------------------------LPHAGLV-WTAGSSPS-------IPPISPTP 257
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449
+ RG+ D+ L + FALGD SA G P PA+AQVA QQ D +
Sbjct: 258 VLERGRLAIDDDLRLVSSANTFALGDLSA---RPGSPWPASAQVAMQQGDATAAAIATLR 314
Query: 450 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
D+ PF F++ GEM+ LG DA ++ G+TL GP+ R+ YL RLP L
Sbjct: 315 MDQEPQPFEFEDRGEMLSLGVGDATLTGM---GLTLAGPLAFQLRRATYLTRLPGLSLGL 371
Query: 510 KVGVSWL 516
+ +WL
Sbjct: 372 RSAGAWL 378
>gi|67922783|ref|ZP_00516283.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
gi|67855342|gb|EAM50601.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
Length = 412
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 206/460 (44%), Gaps = 84/460 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLL-VDQSERFVFKPMLYELLSGEVDAWEI 139
R ++GGGF GL+T L L K PQ L +D + FVF P+L+EL++GE+ ++
Sbjct: 3 RTIVVGGGFVGLFTVLHL-----YHHKYPQSLFFIDNKDHFVFNPLLFELMTGEMTPDQV 57
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P + +LL + + F +D+V + D L V L S + +YD LVL+L
Sbjct: 58 CPLYRELLKGSPITFLEDQVTQI---DLL----------EKKVYLASDIHYDYDNLVLAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR------NFGKDSLIRVAVVGCG 253
G + V GA E+AFPF T EDA + + L + ++ + +L+ A+VG
Sbjct: 105 GRKAGFFRVEGAQEYAFPFKTKEDAETLRQHLQQCLKKASQTEDETTRKTLLTFAIVGGV 164
Query: 254 YSGVELAATVSERLEE--KGIVQAINVETTICPTGTPGN----------REAALKVL--S 299
+G+E+A T+ + L + + Q+ E I P REA + S
Sbjct: 165 PTGIEMAGTLGDLLANWYQKLDQSAQ-EIRILIINRPQELLQGDINVHLREAVSQAFAKS 223
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
+ ++L+LG V + P+S + ++N ++
Sbjct: 224 SISIELILGASVTKVT-----------PDS-----VTYEQNG--------------QTLT 253
Query: 360 FEADLVLWTVG--SKPLLPHVE-PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
E + +W+ G + PL+ ++ P NR G + TL + P +FA GD
Sbjct: 254 IETNTTIWSAGTATNPLIENLAISPENR------TKNGSLKVLPTLQLPEFPEVFAAGDC 307
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ L S PLPATAQVA+QQ NL A I L P + + G MM LG +
Sbjct: 308 TML---SSDPLPATAQVAYQQGKAIAHNLNAMIKGHSLTPAQVKLRGSMMKLGIEKSVA- 363
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + + G GH R+ YL LPT H KV +W+
Sbjct: 364 -NIFDRFEVTGHSGHLIREGTYLQLLPTPIHDFKVTTNWI 402
>gi|78183962|ref|YP_376397.1| NADH dehydrogenase, transport associated [Synechococcus sp. CC9902]
gi|78168256|gb|ABB25353.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. CC9902]
Length = 382
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 189/411 (45%), Gaps = 70/411 (17%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+V+L++ F+F+P+LYELLS E+ WE+AP++ +L+++ G+ + +D V + S+H
Sbjct: 35 RVVLIEPRREFLFQPLLYELLSHELQEWEVAPQYNELVSHHGICWLQDEVISIDRSNH-- 92
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
++ SG + + LVL+ G++P +PG E + F L D + +
Sbjct: 93 -----------SLQTRSGDCIPWRQLVLATGSQPNDFGIPGVKEHSRGFRNLSDVRELRQ 141
Query: 230 KLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPG 289
++ +L + +L A+VG G +GVEL+ +++ L + I +I P +
Sbjct: 142 RIQDLLHQRRANAAL---AIVGAGPTGVELSCKLADLLNGSARIHLIEKGDSILPNSSAF 198
Query: 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
NRE A L + V L L V A +D+ +
Sbjct: 199 NRERATAALERKDVCLHLNANV-------------------------ARVEADRVVFA-- 231
Query: 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 409
E + E ++WT GS+ +P V+P LP RG L ++
Sbjct: 232 ------EGEEIEHQGLIWTAGSQAKVPSVQP-------LPQLHRGHLAVRADLRLQDSFD 278
Query: 410 IFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
+FA+GD++ + P PA AQVA QQ + G + A F F++ GEM+ LG
Sbjct: 279 VFAIGDTAM---NGEDPAPANAQVAMQQGEAVGDAIAALRAGEEPQTFEFKDRGEMLSLG 335
Query: 470 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV----SWL 516
DA ++ G+TL GP+ R+ AYL R+P L VGV +WL
Sbjct: 336 IGDATLTGL---GITLAGPLAFQLRRAAYLTRMPG----LSVGVRSAGAWL 379
>gi|47600773|emb|CAG29362.1| putative type II NAD(P)H dehydrogenase [Arabidopsis thaliana]
Length = 80
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 73/80 (91%)
Query: 459 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
FQNLGEMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW K
Sbjct: 1 FQNLGEMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAK 60
Query: 519 SAIDSVALLQSTLTKVLSSS 538
SA+DS+ALLQS LTKVLS S
Sbjct: 61 SAVDSIALLQSNLTKVLSGS 80
>gi|390564740|ref|ZP_10245504.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nitrolancetus hollandicus Lb]
gi|390172013|emb|CCF84830.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nitrolancetus hollandicus Lb]
Length = 456
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 210/461 (45%), Gaps = 85/461 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILGGGF G+Y AL L+ + D +V +V++ FVF P+L E+LSG ++ +
Sbjct: 16 RILILGGGFAGVYAALNLQRTL--ADLPAEVAIVNRENFFVFYPLLPEILSGSIETESVL 73
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGV---------NGPMACTHGGTVLLESGLIVE 191
+ ++L+ P L V + + HG + +
Sbjct: 74 ----------------NPIRLVVPKATLYVGEVTSIDLAHQRVEIRHGLYRHYQEPATLY 117
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-----SLI 245
YD L+L+LG P+ +PG AE+AF L A + L + LE+ + D L+
Sbjct: 118 YDHLILALGGVPRTAGIPGLAEYAFDVQRLSHAFALRNHLIDTLEQADIETDPDRKRQLL 177
Query: 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG------TPGNREAALKVLS 299
+ G G +GVE+AA + + + AI I P GNR + L
Sbjct: 178 TFVIAGGGANGVEVAAHIRDL-----VYGAIRYYQNIEPADLHVILIHSGNR--LIPDLP 230
Query: 300 ARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLES 357
+R LGY+ R +RR G + D+ + ++P A+ +
Sbjct: 231 SR-----LGYYAERLLRRRG------------------IEILFDRRVSRVEPDAVYLTDG 267
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGD 415
++ AD ++ +VG PN + +LP+ + RG + L V G+P ++ALGD
Sbjct: 268 EVIRADTIVGSVGVM--------PNPMVANLPVPHDPRGAIAVNNDLSVPGYPNVWALGD 319
Query: 416 SSALRDS-SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
++ + D +G+P P TAQ A ++A N+ A++ PL PF ++ +G M+ LG A
Sbjct: 320 NAFVVDPYTGKPYPLTAQTAVREAKLVARNIAASLRGEPLKPFTYRTIGAMVSLGHRSAV 379
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+++ G+T G I + YL++LP + RL+V W
Sbjct: 380 ---AYIRGLTFSGFIAWWLYRTYYLLQLPRWDKRLRVVFDW 417
>gi|56751322|ref|YP_172023.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81299009|ref|YP_399217.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
gi|56686281|dbj|BAD79503.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81167890|gb|ABB56230.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
Length = 478
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 211/462 (45%), Gaps = 82/462 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + I+GGGF GL+ AL L + ++L+D +RF+F+P+L++ LSGE+ +
Sbjct: 9 KPTV-IVGGGFVGLFCALHLRHRHY----PAPIILIDPKDRFIFRPLLFDFLSGELSDEQ 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ PR+ +LL + V+F +D V + + ++ GL +Y LVL
Sbjct: 64 VWPRYEELLQGSEVEFIQDAVSAIDLVER-------------SLTTAQGLTFDYGHLVLG 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-------SELERRNFGKDSLIRVAVVG 251
LGA PGAA++AF F + ++++ L S++ R +D L+ +AVVG
Sbjct: 111 LGATQGYFGTPGAADYAFAFRDRDHVVKLEQHLRQRLQKASQIHDRQQRRD-LLTIAVVG 169
Query: 252 CGYSGVELAATVSERLEEK-----GIVQAIN-VETTICPTGTPGNREAALKVLSARKVQ- 304
G SG+E+ A +++ L G Q + + P G+ A+L L ++Q
Sbjct: 170 AGPSGIEMVALLADWLPLHYGRLGGDPQDLRLILVNRSPEILKGDANASLHDLVLEELQQ 229
Query: 305 ------LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
L+LG V + P + S LE ++G
Sbjct: 230 RQMPVELLLGVAVEAV-----------------TPEGLQYRRSGTDALE---QVRG---- 265
Query: 359 IFEADLVLWTVG--SKPLLPHVE-PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
V+WT G + PLL +E P ++R + G TL + G+P +FA GD
Sbjct: 266 -----TVIWTAGVSNNPLLSQLEIPASDR------DRHGMPYVLPTLQLLGYPEVFAAGD 314
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ +++ +P P AQVA+QQ NL A +++PL P + G +M LG ++A
Sbjct: 315 CAVVKE---QPQPGLAQVAYQQGAAIAHNLLALSHNQPLSPAKVSLRGTLMGLGIDNAVA 371
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+ + + G G RK YL LPT H K + WL+
Sbjct: 372 --NLLNRYRVTGKPGSLLRKATYLELLPTPLHNFKATMDWLS 411
>gi|159467579|ref|XP_001691969.1| type-II NADH dehydrogenase [Chlamydomonas reinhardtii]
gi|158278696|gb|EDP04459.1| type-II NADH dehydrogenase [Chlamydomonas reinhardtii]
Length = 502
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 94/150 (62%), Gaps = 21/150 (14%)
Query: 388 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-----LPATAQVAFQQADFAG 442
P+NARG ET+ TL V G +FALGD + S P LPATAQVAFQQAD+A
Sbjct: 326 FPVNARGALETEPTLRVSGSDNVFALGDVAVAAPSPADPHHTQALPATAQVAFQQADYAA 385
Query: 443 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-----PSFV-----------EGVTLD 486
WN+WAAIN RPLLPF++Q+LG MM LG+ +AAV+ P+ + GVT++
Sbjct: 386 WNVWAAINGRPLLPFKYQHLGSMMALGQTNAAVALPIPVPTALADAGKSSAVGDSGVTVE 445
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
GP+ R+ AYL R PT+E RL V SW+
Sbjct: 446 GPLAQLMRRGAYLYRQPTNEQRLNVATSWV 475
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 196/401 (48%), Gaps = 35/401 (8%)
Query: 43 RFISFAASNSSGRNGDLVVTSE--DESASQTYTWPDKKKPRICILGGGFGGLYTALRLES 100
R + F A+ S +G V ++ A T PR+ +LGGGFGGLY A+RLE
Sbjct: 54 RLMGFRAAGSQAPHGARAVATQATGSPAFGPGTSSGHHSPRVVVLGGGFGGLYAAVRLEQ 113
Query: 101 LVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVK 160
L+W KPQ+ LVDQ++RFVFKP+LYEL++G A E++P F LLA ++F + +V
Sbjct: 114 LMWPRGNKPQITLVDQADRFVFKPLLYELINGAATADEVSPSFEQLLAPYPIRFVQAQVA 173
Query: 161 LLC-PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFS 219
+ + H P A G V L G + YD+LV++LG +P VPG E+A PF+
Sbjct: 174 SVSPAAPHADAPDPDAPDAAGAVTLSDGTQLPYDFLVVALGGQPDSRGVPGVKEWAVPFA 233
Query: 220 TLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279
EDA RV L L + V VVG GY+GVELAATV+ERL +G A+ V+
Sbjct: 234 GYEDALRVKGTLDLLSD----AGAGGCVVVVGAGYAGVELAATVAERLRARGAGGAVAVK 289
Query: 280 TTI--------CPTGTPGNREAALKVLSARKVQLVLGY-FVRCIRRVGEFEASVKQPESG 330
CP G EAA K L+ V+++ G+ F R E E +++ S
Sbjct: 290 VLTPGSHILEGCPE---GQGEAASKALADLGVEVLTGFPFPVNARGALETEPTLRVSGSD 346
Query: 331 AI-----PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV----GSKPLLPHVEPP 381
+ +AA +D + + PA + Q +AD W V +PLLP
Sbjct: 347 NVFALGDVAVAAPSPADPHHTQALPATAQVAFQ--QADYAAWNVWAAINGRPLLPF---- 400
Query: 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
H + A GQ L + + G SSA+ DS
Sbjct: 401 -KYQHLGSMMALGQTNAAVALPIPVPTALADAGKSSAVGDS 440
>gi|307592199|ref|YP_003899790.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306985844|gb|ADN17724.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 454
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 135/459 (29%), Positives = 212/459 (46%), Gaps = 82/459 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+ AL L + V+L+D +ERF FKP+LYE SG+++ ++
Sbjct: 7 QTIIIGGGFTGLFAALHLT----HNHYPRSVILIDPNERFCFKPLLYEYFSGQMEPMQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PR+ +LL +GV F +D V+ + + + L SG I Y LVL++G
Sbjct: 63 PRYEELLQGSGVIFVQDAVQAINLQEQ-------------EIQLISGTIYNYSNLVLAVG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF------GKDSLIRVAVVGCGY 254
+ + GA EFAFP + +DA +DR L ++ + L+ V VVG G
Sbjct: 110 SITNYFGITGAKEFAFPLWSQQDAIALDRHLRYCLQQAIQTEDKESRKHLLTVVVVGGGP 169
Query: 255 SGVELAATVSERL-----------EEKGIVQAINVETTICPTGTPGNREAALKVLSAR-- 301
SGVE+AAT+++ L E I+ + + + R+ A+ L R
Sbjct: 170 SGVEMAATLADLLPYWYAALGGDQNEIRIILLNHGKEILEGDINSHLRQTAMDQLQERAT 229
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
KV+L+LG C + G P+ + + +++ +
Sbjct: 230 KVELLLG----CKAK-------------GITPSTVEYEQEN-------------QTKTIQ 259
Query: 362 ADLVLWTVGS--KPLLPHVE-PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
+ +W GS PL+ ++ P NR ++ G+ TL + P +FA GD +A
Sbjct: 260 SATTIWATGSSTHPLIKNLAIPQENR------DSHGRLLVTPTLQLLDFPEVFAGGDCAA 313
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
+ +SS LP TAQVA+QQ NL A A+ +P P + G ++ LG +AA
Sbjct: 314 IENSS---LPPTAQVAYQQGAEIAHNLTALALGQQP-RPAKINLRGTLLKLGLENAAA-- 367
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + +DG +GH R+ YL LPT H K WL
Sbjct: 368 NIYDKFEVDGELGHLIRQGTYLELLPTPIHNFKATAEWL 406
>gi|354615463|ref|ZP_09033230.1| NADH dehydrogenase (ubiquinone) [Saccharomonospora paurometabolica
YIM 90007]
gi|353220179|gb|EHB84650.1| NADH dehydrogenase (ubiquinone) [Saccharomonospora paurometabolica
YIM 90007]
Length = 431
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 208/460 (45%), Gaps = 85/460 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE-I 139
RI I+GGG+ GLYTALRL+ + + +V +V+ V++P+L E+ SG ++ +
Sbjct: 4 RIVIVGGGYVGLYTALRLQQCLRPGEA--EVTVVNPENFMVYRPLLPEVASGTLEPRHAV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P A L G +F + + P A L +EYD LVL L
Sbjct: 62 VPLRAVL---RGTRFIAGTLTGIDTDRRTATVEPTAGPP---------LTLEYDELVLGL 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCG 253
GA KL +PG AE F++L +A + DR L +LE D +R VG G
Sbjct: 110 GATSKLLPIPGLAEHGIGFNSLAEAAHMRDRVLGQLEIAAASDDPELRRRALTFVFVGGG 169
Query: 254 YSGVELAATVSE-------------RLEEKGI-VQAINVETTICPTGTPGNREAALKVLS 299
Y+GVE A + + R E + + V+A++ I T TP E A L+
Sbjct: 170 YTGVEAVAELQDMAVDVLEGFPEIDRTEMRWVLVEAVD---RILGTVTPDLAELATTELT 226
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
AR + + L + ++++ +L L K
Sbjct: 227 ARGIDIRLNTLL---------------------------ESAEDGVLALSDGTK------ 253
Query: 360 FEADLVLWTVGSKP--LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
FEAD ++W G++P ++ + LP++ RG+ D+T+ V GHP I++ GD +
Sbjct: 254 FEADTLVWVAGTRPHTIVGQL--------GLPVDDRGRLVVDDTMRVNGHPNIWSAGDCA 305
Query: 418 ALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
A+ D G P TAQ A +QA G NL + R + PFR+ + GE + LG+N A
Sbjct: 306 AVPDPEKGGTCPPTAQHAVRQAQQLGDNLLYTVRGRSVKPFRYNSRGEFVTLGKNKAV-- 363
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
V G ++G + + R+ Y ++PT ++V WL
Sbjct: 364 -GEVLGRKVNGSLAWTLRRAYYATQIPTWNRTVRVLGDWL 402
>gi|87125258|ref|ZP_01081104.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. RS9917]
gi|86167027|gb|EAQ68288.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. RS9917]
Length = 379
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 127/426 (29%), Positives = 198/426 (46%), Gaps = 68/426 (15%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
L TAL L Q +P ++L++ ++RF+F P+LYELLS E+ WE+AP + LL + G
Sbjct: 16 LSTALALS----QHQPRPPIVLIEPNDRFLFLPLLYELLSNELRPWEVAPSYDTLLRSRG 71
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
+ + + R + S TV +G + Y LVL+ G+EP +PG
Sbjct: 72 IAWIQSRASRIDTSSR-------------TVQTSNGDCLSYGQLVLASGSEPDDFGIPGV 118
Query: 212 AEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271
+ A F TL+D + ++ L R+ VA+VG G +GVELA +++ L
Sbjct: 119 EDHALRFHTLQDVTLLRERIQALNRQQHRN-----VAIVGAGAAGVELACKLADLLRGSA 173
Query: 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 331
V I TI P NRE A + L R V+L L VR + +ASV + G+
Sbjct: 174 TVHLIERGDTILPNAKAFNREQASRALQKRGVELHLRRSVRSV------DASVVHLDQGS 227
Query: 332 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391
+ + D ++WT G++ LP + P LP
Sbjct: 228 LGH----------------------------DGLIWTAGTRARLPSLTP------SLPCR 253
Query: 392 ARGQAETDETLCVKGHPRIFALGDSSALR--DSSGRPLPATAQVAFQQADFAGWNLWAAI 449
+G+ ++ LC P + A+GD + + +++ P TAQ A QQ A + A
Sbjct: 254 -QGRLLVNDVLCSVACPSLLAIGDVAVRQTVEAAVDTWPHTAQAALQQGQAAARTVMALR 312
Query: 450 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
+PF+F++LGEM+ LG +A ++ G+TL GP+ R+L YL RLP L
Sbjct: 313 AGSEPMPFQFRDLGEMLSLGVGEATITGM---GLTLAGPLAFQLRRLIYLARLPDLSLGL 369
Query: 510 KVGVSW 515
+ +W
Sbjct: 370 RSAGAW 375
>gi|37520740|ref|NP_924117.1| NADH dehydrogenase [Gloeobacter violaceus PCC 7421]
gi|35211735|dbj|BAC89112.1| gll1171 [Gloeobacter violaceus PCC 7421]
Length = 419
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 143/461 (31%), Positives = 203/461 (44%), Gaps = 85/461 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFKPMLYELLSGEVDAWEI 139
R ILGGGF GL+TALRL + P V+LVD+SERF FKP+LYELLSGE+D +++
Sbjct: 9 RTVILGGGFTGLFTALRLNR-----RRYPHPVVLVDRSERFSFKPLLYELLSGEMDVYQV 63
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
PRF +LL + + F +D V+ + G V LESGL Y LVL+L
Sbjct: 64 WPRFEELLRGSRITFIQDAVQTI-------------DLEGRWVELESGLSYAYSNLVLAL 110
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFG----KDSLIRVAVVGCG 253
G + A+ T E+ ++ + L +R G + L+ VAVVG G
Sbjct: 111 GG--AVGSTGPDNRHAYFLRTGEEVLKLRQHLRLCLQRATQLGGPDERKRLLTVAVVGGG 168
Query: 254 YSGVELAATVSE-------RLEEKG---IVQAINVETTICPTGTPGN-REAALKVLSARK 302
+G+ELAAT+++ RL G V + + P R+ A+ L+ R
Sbjct: 169 PAGIELAATLADWLPASFTRLGGAGREVRVALLQRGMQLLPQDMSLYLRKTAVDALARRA 228
Query: 303 --VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
V++VLG ASVK+ E D E + ++I
Sbjct: 229 VPVEVVLG-------------ASVKKVE------------PDGVYYEREGT-----AEII 258
Query: 361 EADLVLWTVG----SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
A V+WT G + P P N G+ T + P +FA GD
Sbjct: 259 PAAAVVWTGGGGGATMPFKLQGLSPEG------YNKNGRLLVTPTWQLPNFPEVFAGGDL 312
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ D P P TAQ A+Q+ + +N+ A R + + LG MM LG + AV
Sbjct: 313 ALDPD---HPQPTTAQAAYQEGEAIAYNIEALARGRQIAVAPVRQLGTMMKLGLGEGAV- 368
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+ + G +G R+L YL LPT + K WLT
Sbjct: 369 -EVFDRYEIAGRLGLLIRQLRYLGLLPTPIYSFKATAYWLT 408
>gi|440197594|gb|AGB85072.1| PndS [uncultured soil bacterium]
Length = 410
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 189/417 (45%), Gaps = 59/417 (14%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+V LV ++ F+F PMLYE LSGEV+AW IAPR+ +LL + V+ +++V G
Sbjct: 27 EVTLVSDADHFLFTPMLYEYLSGEVEAWHIAPRYDELL-DENVRLVQNQVT--------G 77
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-D 228
V+ TV L + ++YD LVL++G V GA EF+ PF L A +
Sbjct: 78 VD-----LGSQTVSLANHEPLKYDVLVLAVGGITNYVGVEGAEEFSLPFRKLAHADNLRH 132
Query: 229 RKLSELER-------RNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281
R + L+R ++ + + AVVG G SG EL+ +++ L + +A++ E
Sbjct: 133 RMVKALDRIPPDMPPQDVRHE--LTFAVVGAGASGCELSTKMADLLSDAFKRRALHGEPR 190
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341
+ L + +V +G +R E+ V+ + + S
Sbjct: 191 V------------LVIEMGDRVVPGMGDQIREFVEDALHESRVEVHTGTRVVKV----TS 234
Query: 342 DKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETD 399
D E + ++ L++ V+WT G K PLL + + RG
Sbjct: 235 DDITFEHEGKLESLKTAA-----VVWTGGVKMSPLLEQLNVEKTK--------RGLLVVK 281
Query: 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
TL + H IFALGD + D++ L TAQ+AFQQA A N+ A + F
Sbjct: 282 PTLQLAQHENIFALGDIALYPDAT-PTLAGTAQLAFQQASLAAKNIKAFNAGEQMHTKHF 340
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ LGE + LG AAV G G + AR Y RLPT HRL+VG SW
Sbjct: 341 EELGEAISLGTERAAV---LTGGKAFGGALARQARFALYTSRLPTWHHRLRVGASWF 394
>gi|345304500|ref|YP_004826402.1| NADH dehydrogenase (ubiquinone) [Rhodothermus marinus
SG0.5JP17-172]
gi|345113733|gb|AEN74565.1| NADH dehydrogenase (ubiquinone) [Rhodothermus marinus
SG0.5JP17-172]
Length = 436
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 204/450 (45%), Gaps = 64/450 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
+ +PR+ I+G GFGGL A L + P +V+L+D+ F+P+LY++ + ++
Sbjct: 3 QDRPRVVIVGAGFGGLPLARALR-------RDPVEVVLIDRQNYHTFQPLLYQVATAGLE 55
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
EIA A G+ F R +GV+ VLLE G +++D+L
Sbjct: 56 PEEIAH------AVRGI-FQGRRNFRFVMGTVVGVDWDAQA-----VLLEDGDRIDFDYL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERR-NFGKDSLIRVAVV 250
VL+ GA + GAAE++FP TLEDA + R+ E +R ++ L+ + VV
Sbjct: 104 VLAAGATTNYFGIEGAAEYSFPLKTLEDAIALRSHIIRQFEEADRHPERIREGLLNIVVV 163
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQL 305
G G +G+E+A + E E V P P NR AL + A +
Sbjct: 164 GGGPTGIEMAGALVEWFEL--------VFRKDYPH-LPMNRARVLLVEALDTVLASYDER 214
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
+ Y R +RR G E + P + P+ ++ ++ V
Sbjct: 215 LQQYARRQLRRRG-VELHLGDPVARVTPDAVYLQSGER----------------IPTRTV 257
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G + P +RL LP G+ E + L V GHP +F +GD +A RD GR
Sbjct: 258 IWAAGVRAC-----PLADRL-GLPQARGGRIEVEADLRVPGHPNVFVIGDLAASRDEQGR 311
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
P A VA Q A + + + PFR+++ G M +GR+ AAV+ G+ L
Sbjct: 312 LHPQMAPVAIQGARHVARQIRRLLQGQETEPFRYRHRGMMATIGRH-AAVA-ELKGGLRL 369
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
GP+ A +L++L +RL+V ++W
Sbjct: 370 TGPLAWFAWLALHLVQLIGFRNRLQVLINW 399
>gi|347753864|ref|YP_004861428.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
gi|347586382|gb|AEP10912.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
Length = 413
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 192/444 (43%), Gaps = 81/444 (18%)
Query: 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGV 152
YTA L +L + +V LV ++ F+F P+LYE+L+ EV W IAP F ++L
Sbjct: 17 YTARALSAL--GVTQTAEVTLVSRTPTFLFLPLLYEILTDEVADWHIAPPFEEVLPRN-- 72
Query: 153 QFFKDRVKLLCPSDHLGVNGP------MACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206
+ +C G P + C G L E D LVL+LG+
Sbjct: 73 ------CRFVCGEVLGGEFQPRRYGVRVRCADGEQTL-------EADTLVLALGSVADDF 119
Query: 207 VVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIRVAVVGCGYSGVELAATVSE 265
+PG PF +L DA + R L E ++ + + V+G G SGVELAA ++
Sbjct: 120 GLPGVKAHTRPFRSLADAHALKRSLVEAVQHAAAVPRETVSLVVIGAGPSGVELAAVAAD 179
Query: 266 RLEE----------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
RL+ + + ++ I P R A + L+ R ++L LG V
Sbjct: 180 RLQSELRQAGLPPTRAHLHLVDRLPEILPQYASALRHLAHRELARRHIKLHLGVGVASCS 239
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
G +EL+ + A ++WT GS+P
Sbjct: 240 SAG---------------------------VELE------DGTHIAARTIVWTAGSRPAP 266
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
E P R + RG+ TL V G P ++ALGD +A + ATAQVA
Sbjct: 267 VLAEFPFVR------DRRGRIPVSRTLEVPGFPGVYALGDIAASVAAP-----ATAQVAV 315
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
+QA N+ AA L + ++ LGEMM LGR AA + + GV +G G+ R+
Sbjct: 316 RQALVVAHNIAAAQQGAALREYHYEPLGEMMTLGRGCAAAN---ILGVVFNGVAGYLTRR 372
Query: 496 LAYLIRLPTDEHRLKVGVSWLTKS 519
L YL+ +P H +VG+SWL +S
Sbjct: 373 LVYLLAMPEPWHAARVGLSWLGQS 396
>gi|381164705|ref|ZP_09873935.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
gi|379256610|gb|EHY90536.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
Length = 431
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 202/445 (45%), Gaps = 55/445 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTAL+L+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIIGGGYVGLYTALKLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L S P+A L ++YD LVL+LG
Sbjct: 62 VPLRAVLRKA--RFLSGALTALDTSTSTATVRPIAGPE---------LTLDYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCGY 254
A KL VPG E F++L +A + D L +LE + D +R VG GY
Sbjct: 111 ATSKLLPVPGLVENGVGFNSLAEAAHLRDHVLRQLEIASATTDPKLRRRALTFVFVGGGY 170
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVE A + + AI+V G P + ++ + + +LG +
Sbjct: 171 TGVEAIAELQD--------MAIDVLE-----GYPDVDRSEMRWILVEAMDRILGTVSADL 217
Query: 315 RRVGEFEASVKQPE--SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ E + + + +G + A D +L+L K +D ++W G++
Sbjct: 218 AELATTELTARGIDIRTGTLLESAEDG-----VLQLSDGAK------LASDTLVWVAGTR 266
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 431
P +P L LP++ RG+ D+T+ V GHP I++ GD +A+ D G P TA
Sbjct: 267 P-----QPILGEL-GLPVDDRGRLVVDDTMRVNGHPNIWSAGDCAAVPDPEQGGTCPPTA 320
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
Q A +QA G NL + + PFR+ + GE + LG+N A V G +DG +
Sbjct: 321 QHAVRQAQQLGDNLLLTLRGHAVKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGSLAW 377
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWL 516
+ R+ Y ++PT +V WL
Sbjct: 378 ALRRGYYATQIPTWNRTARVLCDWL 402
>gi|418463518|ref|ZP_13034524.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea SZMC 14600]
gi|359732897|gb|EHK81903.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea SZMC 14600]
Length = 431
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 202/445 (45%), Gaps = 55/445 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTAL+L+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIIGGGYVGLYTALKLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L S P+A L ++YD LVL+LG
Sbjct: 62 VPLRAVLRKA--RFLSGALTALDTSTSTATVQPIAGPE---------LTLDYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCGY 254
A KL VPG E F++L +A + D L +LE + D +R VG GY
Sbjct: 111 AMSKLLPVPGLVENGVGFNSLAEAAHLRDHVLRQLEIASATTDPKLRRRALTFVFVGGGY 170
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVE A + + AI+V G P + ++ + + +LG +
Sbjct: 171 TGVEAIAELQD--------MAIDVLE-----GYPDVDRSEMRWILVEAMDRILGTVSADL 217
Query: 315 RRVGEFEASVKQPE--SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ E + + + +G + A D +L+L K +D ++W G++
Sbjct: 218 AELATTELTARGIDIRTGTLLESAEDG-----VLQLSDGAK------LASDTLVWVAGTR 266
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 431
P +P L LP++ RG+ D+T+ V GHP I++ GD +A+ D G P TA
Sbjct: 267 P-----QPILGEL-GLPVDDRGRLVVDDTMRVNGHPNIWSAGDCAAVPDPEQGGTCPPTA 320
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
Q A +QA G NL + + PFR+ + GE + LG+N A V G +DG +
Sbjct: 321 QHAVRQAQQLGDNLLLTLRGHAVKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGSLAW 377
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWL 516
+ R+ Y ++PT +V WL
Sbjct: 378 ALRRGYYATQIPTWNRTARVLCDWL 402
>gi|268318203|ref|YP_003291922.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rhodothermus marinus DSM 4252]
gi|262335737|gb|ACY49534.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhodothermus marinus DSM 4252]
Length = 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 203/450 (45%), Gaps = 64/450 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
+ +PR+ I+G GFGGL A L + P +V+L+D+ F+P+LY++ + ++
Sbjct: 15 QDRPRVVIVGAGFGGLTLARALR-------RDPVEVVLIDRQNYHTFQPLLYQVATAGLE 67
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
EIA A G+ F R +GV+ VLLE G +++D+L
Sbjct: 68 PEEIAH------AVRGI-FQGRRNFRFVMGTVVGVDWDAQA-----VLLEDGDRIDFDYL 115
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERR-NFGKDSLIRVAVV 250
VL+ GA + GAAE++F TLEDA + R+ E +R ++ L+ + VV
Sbjct: 116 VLAAGATTNYFGIEGAAEYSFSLKTLEDAIALRSHIIRQFEEADRHPERIREGLLNIVVV 175
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQL 305
G G +G+E+A + E E V P P NR AL + A +
Sbjct: 176 GGGPTGIEMAGALVEWFEL--------VFRKDYPH-LPMNRARVLLVEALDTVLATYDER 226
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
+ Y R +RR G E + P + P+ ++ ++ V
Sbjct: 227 LQQYARRQLRRRG-VELHLGDPVARVTPDAVYLQSGER----------------IPTRTV 269
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G + P +RL LP G+ E + L V GHP +F +GD +A RD +GR
Sbjct: 270 IWAAGVRAC-----PLADRL-GLPQTRGGRIEVEADLRVPGHPNVFVIGDLAASRDENGR 323
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
P A VA Q A + + + PF +++ G M +GR+ AAV+ G+ L
Sbjct: 324 LHPQMAPVAIQGARHVARQIRRLLQGQETEPFHYRHRGTMATIGRH-AAVA-ELKGGLRL 381
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
GP+ A +L++L +RL+V ++W
Sbjct: 382 TGPLAWFAWLALHLVQLIGFRNRLQVLINW 411
>gi|161527520|ref|YP_001581346.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nitrosopumilus maritimus SCM1]
gi|160338821|gb|ABX11908.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nitrosopumilus maritimus SCM1]
Length = 451
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 205/462 (44%), Gaps = 56/462 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K +I +LGGGF GL +LE +++D + +++LV + +F PML ++ SG ++
Sbjct: 3 RNKKKIVVLGGGFAGLECTRKLEEY-FKNDSEIEIVLVSEDNFLLFTPMLPQVASGMIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I + F++ RVK + P G + G + G+ + YD+LV
Sbjct: 62 RHIVMPIRTITKKA--TFYEGRVKNIDPY------GKIVNLWGSGN--KRGISLHYDFLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++LG+E + + A+ TL DA V ++ +E E K SL+ VV
Sbjct: 112 VALGSETNFFGMNDLEKNAYQMKTLNDAVMVRNRMIDMLEQAENETNPILKHSLLTFVVV 171
Query: 251 GCGYSGVELAATVSERLEE---------KGIVQAINVETTICPTGTPGNREAALKVLSAR 301
G G++G+E A + + L + K ++ + +E P PG E+ K +
Sbjct: 172 GGGFAGIETAGEIMDLLLDVRKYYPNIKKEDIRVVVLEA--LPNILPGFSESLAKFAQEK 229
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
+ G ++ V F+ + I + DK++ I ++++
Sbjct: 230 LTEH--GIEIKLQTAVTSFDG-----DEVMIKRLDVDKDASD-----DSVISSIQTKT-- 275
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
V+WT G V P N L +G+ D+ L V P +FA+GD + D
Sbjct: 276 ---VIWTAG-------VTPVNTIKRSLFKTDKGKIIVDKNLEVNDFPGVFAIGDCALFMD 325
Query: 422 -SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
+S RP P TAQ+A QA A NL A I + F +++ G+M I+G+ SF+
Sbjct: 326 PNSQRPFPPTAQIAEAQAKIAAKNLHALIRNEEKTEFTYESKGQMAIIGKRTGIA--SFL 383
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
G+ + G + YL ++PT + R +V + W + D
Sbjct: 384 -GMNIHGIFAWFLWRNIYLSKIPTWDKRFRVFLDWTADAIFD 424
>gi|375099282|ref|ZP_09745545.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
gi|374660014|gb|EHR59892.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
Length = 432
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/443 (27%), Positives = 202/443 (45%), Gaps = 51/443 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTALRL+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIVGGGYVGLYTALRLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L T +F + L + PMA L +EYD LVL+LG
Sbjct: 62 VPLRAVLRKT--RFISGALTGLDTARATATVQPMAG---------PSLELEYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVAV-----VGCGY 254
A +L VPG AE F++L +A + D L +LE D +R + VG GY
Sbjct: 111 ATSRLLPVPGLAERGIGFNSLAEAAHLRDHVLRQLEIAAATTDPEVRRSALTFVFVGGGY 170
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVE A + + A++V G P + ++ + + +LG +
Sbjct: 171 TGVEAVAELQD--------MAVDVLE-----GYPEVDRSEMRWILVEAMDRILGTVSADL 217
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
+ E + + + I ++++ +L+L K +D ++W G++P
Sbjct: 218 AELATTELTARGID---IRTGTLLESAENGVLQLSDGTK------LSSDTLVWVAGTRPQ 268
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQV 433
E LP++ RG+ D+T+ V G P I++ GD +A+ D G P TAQ
Sbjct: 269 TIIGE------LGLPVDDRGRLVVDDTMRVHGQPNIWSAGDCAAVPDPEKGGTCPPTAQH 322
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A +QA G NL + + PFR+ + GE + LG+N A V G +DG + +
Sbjct: 323 AVRQAQQLGENLLLTLRGHAVKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGTLAWTL 379
Query: 494 RKLAYLIRLPTDEHRLKVGVSWL 516
R+ Y ++PT ++V W+
Sbjct: 380 RRAYYATQIPTWNRTVRVLGDWV 402
>gi|75909779|ref|YP_324075.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena variabilis ATCC 29413]
gi|75703504|gb|ABA23180.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anabaena variabilis ATCC 29413]
Length = 455
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 200/446 (44%), Gaps = 56/446 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+TAL L + V+L+D++ERF FKP+LYE E+D++++
Sbjct: 7 QTVIVGGGFTGLFTALHLA----HEHYPRSVILIDRNERFCFKPLLYEYFDNEMDSFQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF++LL +GV F +D V+ + H V L SG Y LVL+LG
Sbjct: 63 PRFSELLKGSGVIFVQDTVQTI-------------DLHQREVKLASGNSYSYSNLVLALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD------SLIRVAVVGCGY 254
+ + GA AFPF T DA +DR L + ++ + L+ V VVG G
Sbjct: 110 SVTGYHHIEGANINAFPFWTQADAIALDRHLRDCLQKAIQTEDIKQRRQLLTVVVVGGGA 169
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
SGVE+AAT+++ L GN E +L +++ G +
Sbjct: 170 SGVEMAATLADFLPH-------------WYAALGGNSEEIRVILLNHGQKILDGDINDPL 216
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS--K 372
R + E E Q S AI I + + + ++ G E + +WT G+
Sbjct: 217 RPIAEKEL---QKRSVAIEIITEAEATAVHPNAVEYKSHG-EIKTLTTHTTIWTAGTSIH 272
Query: 373 PLLPHVEPPNNR--LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
PL+ + P H PL T+ P +FA GD +A++DS LP T
Sbjct: 273 PLIQELPIPQEHRDHHSRPL-------VTSTMQFLDFPEVFAGGDCAAVQDSF---LPPT 322
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
AQVA+QQ NL A L P + G ++ LG NDAA + V V G
Sbjct: 323 AQVAYQQGANIAHNLKALALGEELEPAKVNIRGTLLKLGLNDAAANLFNVFEVV--GEPA 380
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWL 516
H R+ YL LPT H + W+
Sbjct: 381 HLIRQGTYLTLLPTPIHDFQATTEWV 406
>gi|410697032|gb|AFV76100.1| NADH dehydrogenase, FAD-containing subunit [Thermus oshimai JL-2]
Length = 402
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 167/373 (44%), Gaps = 75/373 (20%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++A IA LL +F RV+ GV+
Sbjct: 30 LLVDARNHHLFQPLLYQVATGYLEAPAIAHPLRPLLGRG--RFLLARVE--------GVD 79
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRK 230
G +LLE G + Y L+L+ G+ P VPG AF LEDA R+ R
Sbjct: 80 -----LKGRRLLLEGGEALPYTHLILATGSRPHDLGVPGVGRHAFFLKGLEDAQRIRQRL 134
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLE--------EKGIVQAINVET-- 280
L LE G+ L R+ VVG G +GVELA ++E L E G + + +E
Sbjct: 135 LLALEGAARGERPL-RLLVVGGGPTGVELAGALAEFLRYALRRDFPEVGGAEVLLLEAGE 193
Query: 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 340
+ P+ P A + L V++VLG V VG E + E +P
Sbjct: 194 RLLPSFRPALSAYAKRALEGMGVRVVLGAQV-----VGVEEGGARLREGAFLP------- 241
Query: 341 SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
ADLVLW VG + N L LP + RG+ TD
Sbjct: 242 ---------------------ADLVLWAVGVR---------GNPLPGLPTDPRGRVPTDP 271
Query: 401 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 460
L + GHP ++A+GD + L LP A VA QQ A NL A+ + +PFR++
Sbjct: 272 FLRLPGHPEVYAVGDVNGLG------LPGLAPVALQQGRLAAENLLRALRGQEPIPFRYR 325
Query: 461 NLGEMMILGRNDA 473
+ G++ ++GRN A
Sbjct: 326 DRGQLAVIGRNKA 338
>gi|108804058|ref|YP_643995.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
gi|108765301|gb|ABG04183.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
Length = 450
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 202/467 (43%), Gaps = 95/467 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF G YTA + + +D VL++ + F F P++ E++S +VDA +A
Sbjct: 27 KVLIVGGGFAG-YTAAKTLCELVRDRDDVGVLVLSRENYFTFWPIVPEVVSNDVDAHNVA 85
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L G F + RV+ + P ++ V+ E + YD LV+++G
Sbjct: 86 QPLRRALITAGASFRRARVQRVVPERNV-------------VVAEGDIEFPYDQLVIAVG 132
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR---------VAVVG 251
+P +PG E A LEDA ++ ++ E F + SLIR V+G
Sbjct: 133 GQPNFFGIPGVEEHALSMRGLEDAEQIRNRVIE----RFEEVSLIRGEIPESKLTFVVIG 188
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETT------------ICPTGTPGNREAALKVLS 299
G +GVE+A+ + + E N++ I P P R+AA L
Sbjct: 189 GGATGVEVASQIHTLVHEHLASDYPNIDPNRVRIYLVEALPEILPELDPALRKAARNRLY 248
Query: 300 ARKVQLVLGYFVR-----CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354
++++++ C+R G E S
Sbjct: 249 RQRIEVLTNTLAEEVTADCVRLKGGGEIS------------------------------- 277
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
++ V+WT G++P RL LP + + DE L V+GH I+A+G
Sbjct: 278 -------SENVIWTAGNRP-----NAVIQRL-GLPYDEKNGIRVDEYLRVEGHRDIWAIG 324
Query: 415 DSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDR--PLLPFRFQNLGEMMILGR 470
D +A+ D G+ +P AQ A Q+ N+ A ++ R L F ++ LG+++ LG
Sbjct: 325 DCAAIPDVRQEGKIVPPNAQAAVQEGKTVARNVLAVLDGREDELERFEYKPLGQLVELG- 383
Query: 471 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+D AV+ V GV G + +LAYL+RL + + + +V W+
Sbjct: 384 SDFAVNE--VMGVRFSGFLAALFWRLAYLVRLTSPQSKARVAADWIV 428
>gi|251798801|ref|YP_003013532.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. JDR-2]
gi|247546427|gb|ACT03446.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. JDR-2]
Length = 397
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 179/412 (43%), Gaps = 79/412 (19%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TALRL+ + ++ V LV++ + L+ +G +
Sbjct: 5 PKIVILGAGYGGVLTALRLQKELNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDNPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + F K V + P D V+LE G + YD+LV+ L
Sbjct: 63 RVSISKLIDEFKIDFVKSTVVQIRPQDK-------------KVILEDGTL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD----SLIRVAVVGCGYS 255
G EP+ +PG E+A ++ ++ R+ R+ E + F ++ + V G G++
Sbjct: 109 GGEPETFGIPGLGEYAMNIRSI-NSVRLIREHIEYQFARFKREPHRTDYLTFIVGGAGFT 167
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +S+R+ E +V+ N+E PT PG E A+ VL+ + V
Sbjct: 168 GIEFIGELSDRIPELCKQFDVDPALVKIYNIEA--APTALPGFDPELVEYAMDVLTKKGV 225
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+G ++ C P+ + E + ++
Sbjct: 226 TFRIGTAIKEC------------TPDGVVVG----------------------EGEEIKS 251
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD 421
V+WT G + N + D RG+ + D+ L GH I+ +GD+S + +
Sbjct: 252 QTVIWTGGIR--------GNRLIEDAGFETMRGRVKVDDNLRAPGHENIYIVGDNSLMFN 303
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ+A QQ NL A+I ++PL F F N G + LG+ +A
Sbjct: 304 PEGRPYPPTAQIAMQQGVVCAHNLIASIRNQPLKAFVFSNKGTVASLGKGEA 355
>gi|384564809|ref|ZP_10011913.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
gi|384520663|gb|EIE97858.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
Length = 431
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 202/442 (45%), Gaps = 51/442 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTALRL+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIVGGGYVGLYTALRLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L PMA L ++YD LVL++G
Sbjct: 62 VPLRAVLRKA--RFVSGALTGLDTVRATATVRPMAGPE---------LELDYDELVLAVG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVAV-----VGCGY 254
A KL VPG AE F++L +A + D L +LE + D +R + VG GY
Sbjct: 111 ATSKLLPVPGLAEHGIGFNSLAEAAHLRDHVLRQLEIASATPDPKLRRSALTFVFVGGGY 170
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVE A + + A++V G P + ++ + + +LG +
Sbjct: 171 TGVEAIAELQD--------MAVDVLE-----GYPEIDRSEMRWVLVEAMDRILGTVSADL 217
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
+ E + + + I ++++ +++L K AD ++W G++P
Sbjct: 218 AELATTELTARGID---IRTGTLLESAENRVMQLSDGTK------LPADTLVWVAGTRP- 267
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQV 433
+P L LP++ RG+ D+T+ V GH I++ GD +A+ D G P TAQ
Sbjct: 268 ----QPILGEL-GLPVDERGRLVVDDTMRVDGHANIWSAGDCAAVPDPEKGGTCPPTAQH 322
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A +QA G NL + R PFR+ + GE + LG+N A V G +DG + +
Sbjct: 323 AVRQAQQLGENLLLTLRGRAGKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGVLAWTL 379
Query: 494 RKLAYLIRLPTDEHRLKVGVSW 515
R+ Y ++PT ++V W
Sbjct: 380 RRAYYATQIPTWNRTVRVLGDW 401
>gi|320162268|ref|YP_004175493.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
gi|319996122|dbj|BAJ64893.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
Length = 427
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/413 (27%), Positives = 176/413 (42%), Gaps = 78/413 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL A R L QV L+D+ +F+P+LY++ + V A EI
Sbjct: 7 PHVVIVGAGFGGLRAARRFSRL------PVQVTLIDRQNYHLFQPLLYQVATAGVSAGEI 60
Query: 140 A-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A P A L +F LL L ++ T G V YD L+L+
Sbjct: 61 AYPVRAVLRRQRNARF------LLAEVTDLDLSNRRLLTTAGEV--------RYDVLILA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL------ERRNFGKDSLIRVAVVGC 252
+G + A A TL+DA R+ + L E + +++ AV G
Sbjct: 107 MGGQTNFFGNATLARHALTLKTLQDAERIRDHVLRLFEHASRESNVEKRRAMLTFAVAGG 166
Query: 253 GYSGVELAATVSERLE----------EKGIVQAINVETT--ICPTGTPGNREAALKVLSA 300
G SGVE+A +SE + + I + I +E + P P ++A L+ L A
Sbjct: 167 GPSGVEMAGALSELIHGVLKRDFPGFDLSIARVILLEAADRLLPAMPPALQQATLQALHA 226
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V++ L A ++ D ++ L+ + +
Sbjct: 227 KGVEVWLN---------------------------APVESYDGTLIRLK------DGRQI 253
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+ ++W G + P P + G+ TL V G+P +F +GD++ L
Sbjct: 254 PSRTLIWVTGIRAAGLAERIPA------PRASNGRIRVQPTLQVPGYPEVFVIGDAAYLE 307
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
D G PLP A VA QQAD+A N+ + +PLLPFR+++ G M +GRN A
Sbjct: 308 DEHGNPLPMVAPVALQQADWAVANVQCLLEGKPLLPFRYRDPGMMATIGRNQA 360
>gi|221633885|ref|YP_002523111.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Thermomicrobium roseum DSM 5159]
gi|221156852|gb|ACM05979.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Thermomicrobium roseum DSM 5159]
Length = 468
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 121/451 (26%), Positives = 201/451 (44%), Gaps = 65/451 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I GGGF G+ A +L +V LV + FVF P++ E+++G + I
Sbjct: 11 RIVIAGGGFAGVTAAHQLRHAA--RAGHVEVALVSRENAFVFYPLMPEVIAGGLRVETIL 68
Query: 141 PRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
+L + TGV + V + HG + L + Y
Sbjct: 69 TSIRHVLPHARLYVGELTGVHLERQTVTI---------------QHGLYQHHQRPLELPY 113
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-ERRNFGKD-----SLIR 246
D LVL+LG P +PG ++AF L +A + L +L E+ + D L+
Sbjct: 114 DHLVLALGGVPATYGIPGLDDYAFDVQRLSNAFALRNHLIDLLEQADIEPDPAEQRRLLT 173
Query: 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
V V+G G +GVE+AA + A+ I P + A VL +L+
Sbjct: 174 VVVIGGGPTGVEVAAEIRSLF-----THALPYYRAIQP-------DTARIVLVEALPRLL 221
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI-FEADLV 365
G F +V + + + + +++++PA L+ E+ +
Sbjct: 222 TG-----------FPDAVAHRAARELRQRGIEVLLGRKVIQVEPAAVVLDDGTRLESRTI 270
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSG 424
+ +G +P P R LPL+ RG+ DE L V GHP ++A+GD++A+ D ++G
Sbjct: 271 VSAIGVEP------NPIVRSFGLPLDQRGRIVVDEYLRVTGHPNVWAIGDNAAVIDPATG 324
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
RP TAQ A +QA NL A++ PL P R++ G M+ LG +DA +++ VT
Sbjct: 325 RPYAPTAQHAVRQAKLLARNLVASLRSEPLQPMRYRTRGMMVTLGDHDAI---AWLGRVT 381
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
L G + + L+++P + R+++ + W
Sbjct: 382 LTGFLAWWLWRTYALLQIPRWDRRIRLAMEW 412
>gi|383828659|ref|ZP_09983748.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
xinjiangensis XJ-54]
gi|383461312|gb|EID53402.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
xinjiangensis XJ-54]
Length = 431
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 199/443 (44%), Gaps = 51/443 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTALRL+ + Q + +V +++ V++P+L E+ SG ++
Sbjct: 4 RILIVGGGYVGLYTALRLQRGLRQGEA--EVTVINPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L PMA L + YD LVL+LG
Sbjct: 62 VPLRAVLRRA--RFISGALTDLDTDRATATVQPMAG---------PALSLPYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCGY 254
A KL +PG A+ F++L +A + D L +LE D +R VG GY
Sbjct: 111 ATSKLLPIPGLADNGIGFNSLAEAAHLRDHVLRQLEIAAATTDEELRRCALTFVFVGGGY 170
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVE A + + AI+V G P + ++ + + +LG +
Sbjct: 171 TGVEAIAELQD--------MAIDVLE-----GYPEVDRSEMRWILVEAMDRILGTVDADL 217
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
+ E + + + I ++++ +L L K +D ++W G++P
Sbjct: 218 AELATTELTARGID---IRTGTLLESAENRVLRLSDGTK------LSSDTLVWVAGTRPQ 268
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQV 433
E LP++ RG+ D+T+ V GH I++ GD +A+ D G P TAQ
Sbjct: 269 TIVGE------LGLPVDERGRLVVDDTMRVNGHANIWSAGDCAAVPDPEKGGTCPPTAQH 322
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A +QA G NL + + + PFR+ + GE + LG+N A V G ++G + +
Sbjct: 323 AVRQAQQLGENLLLTLRGQAVKPFRYNSRGEFVTLGKNKAV---GQVLGHKVNGSLAWTL 379
Query: 494 RKLAYLIRLPTDEHRLKVGVSWL 516
R+ Y ++PT ++V W+
Sbjct: 380 RRAYYATQIPTWNRTVRVLGDWV 402
>gi|421867759|ref|ZP_16299412.1| NADH dehydrogenase [Burkholderia cenocepacia H111]
gi|358072172|emb|CCE50290.1| NADH dehydrogenase [Burkholderia cenocepacia H111]
Length = 430
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 181/406 (44%), Gaps = 55/406 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + GG V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRARRRVQLGEIRSQDGGVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + + A + L R+ +D RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVET-------TICPTGTPGNREAALKVLSA---RKVQLVLGYF 310
A +S LE + QA +T T+ +G P A +SA R+++ + G+
Sbjct: 183 AELSRLLE---VAQAYGDDTVRERLQLTLLESG-PRILNAFPPRISASAQRRLEQI-GFR 237
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
V RV +AD N Y + EADL++W G
Sbjct: 238 VLTSTRV-----------------TSADANGFHY----------GDGSFAEADLMVWAAG 270
Query: 371 SKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPL 427
V+ P+ L L N Q TL G R+FA+GD S L D RPL
Sbjct: 271 -------VKAPDFMQALGGLDTNRANQIVVGPTLQATGDERVFAIGDCGSLLPDGHERPL 323
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQVA QQA+ +L A ++ P+ PF F + G ++ + DA
Sbjct: 324 PPTAQVATQQAEHLAKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|253575330|ref|ZP_04852668.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. oral taxon 786 str. D14]
gi|251845327|gb|EES73337.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. oral taxon 786 str. D14]
Length = 397
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 178/413 (43%), Gaps = 75/413 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + F L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYFTTHLHMPAAGTDSIEHT 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + K V+ + +D V+L+ G + YD+LV++L
Sbjct: 63 RVAISKLIDEFKIDLVKSNVQEIRLADK-------------KVVLQDGTL-SYDYLVIAL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE----LERRNFGKDSLIRVAVVGCGYS 255
G EP+ +PG E+A ++ ++ R+ R+ E L + + + + V G G+S
Sbjct: 109 GGEPESFGIPGLTEYAMTIRSI-NSVRLIRQHIEYQFALYKMDESRTDRLNFVVGGAGFS 167
Query: 256 GVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKVQL 305
G+E A +++R+ + V NVE T+ P P E A+ VL + VQ
Sbjct: 168 GIEFVAELADRIPQLCKEYDVDPNFVNVYNVEAAPTVLPGFDPELVEYAMDVLKKKGVQF 227
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
+G ++ + D IL IK + V
Sbjct: 228 KIGVAIK-------------------------ECTPDGVILATGEEIK--------SQTV 254
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
+WT G + NRL + ARG+ + D+ L GH +F +GD+S + +
Sbjct: 255 IWTGGIR---------GNRLIEAAGFETARGRVKVDDYLRAPGHDNVFIIGDNSLMFNPE 305
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
GRP P TAQ+A QQ N+ AAI + L F F N G + LG+ +A S
Sbjct: 306 GRPYPPTAQIAMQQGVTCAQNVVAAIRGKELKKFVFSNKGTVASLGKGEAIAS 358
>gi|333373994|ref|ZP_08465887.1| pyridine nucleotide-disulfide oxidoreductase [Desmospora sp. 8437]
gi|332968578|gb|EGK07633.1| pyridine nucleotide-disulfide oxidoreductase [Desmospora sp. 8437]
Length = 402
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 172/411 (41%), Gaps = 75/411 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I +LG G+GGL T + L+ + + ++ +V LV+ + L+E +G +D
Sbjct: 9 PKIVVLGAGYGGLMTTVGLQKEL--NHQEAEVTLVNLNPYHYVTTKLHEPAAGTLDPDYA 66
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSD---HLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
A LL V+F +D V + P + HL P+ +YD+LV
Sbjct: 67 RVEIAGLLKQEKVRFVQDEVTRVDPENKEIHLAGREPL----------------KYDYLV 110
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----SELERRNFGKDSLIRVAVVGC 252
LG+ P+ + G E AF L ++ + S+ +D L+ + V G
Sbjct: 111 FGLGSAPETFGIKGLLENAFFIRNLNGVRQIREHIEYMFSQYNNSEEKRDELLTIVVGGA 170
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
G++G+E + +R+ E + V+ +NVE PT PG E +K
Sbjct: 171 GFTGIEFVGELVDRIPELCRQFDIPREKVRLVNVEA--APTVLPGFDEELVK-------- 220
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
Y ++ + G E + P PN K +K ++
Sbjct: 221 ----YAMQYLEEHG-VEFRISTPIEECTPNGVVLKGGEK----------------IDSAT 259
Query: 365 VLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + PLL ARG+ + DE L GH F +GDSS + +
Sbjct: 260 VVWTGGVRGNPLLEEAGIET---------ARGRVKVDEYLRAPGHEDFFVVGDSSLIFND 310
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ+A QQ NL A + + PF+F++ G + LGR A
Sbjct: 311 EGRPFPPTAQMATQQGQHLSSNLVAQLRGGSMKPFKFESKGTLASLGRGSA 361
>gi|310643800|ref|YP_003948558.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus polymyxa SC2]
gi|309248750|gb|ADO58317.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus polymyxa SC2]
gi|392304532|emb|CCI70895.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus
polymyxa M1]
Length = 396
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 175/412 (42%), Gaps = 78/412 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ATVTLINRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L+ V K VK + P++ ++LE G + YD+LV+ L
Sbjct: 63 RIPIAQLIDEFKVDLVKGTVKEIIPTEK-------------KIVLEDGSL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNFGKDSLIRVAVVGCGYSG 256
G EP+ +PG +FA ++ ++ R+ R+ E + +N GK + V G G+SG
Sbjct: 109 GGEPETFGIPGMDQFALTIRSI-NSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGFSG 167
Query: 257 VELAATVSERLEEKGI--------VQAINVETTICPTGTPGNR----EAALKVLSARKVQ 304
+E A +++RL + +Q INVE PT PG E A+ VL + V
Sbjct: 168 IEFVAELADRLPQLAKAYDIDFNRIQIINVEA--APTALPGFDPELVEYAMDVLKRKGVN 225
Query: 305 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+G ++ C LQ + E + EA
Sbjct: 226 FRIGVPIKEC----------------------------------LQDGVIVGEGEKIEAC 251
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLN-ARGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N + RG+ + D+ L GH IF +GDSS + +
Sbjct: 252 TVVWTGGIR--------GNGLIEKAGFEVVRGRVKVDDFLRAPGHDDIFIIGDSSLMFNP 303
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
GRP P TAQ+A QQ NL A + + L F F N G + LG+ +A
Sbjct: 304 EGRPYPPTAQIAMQQGVLCAKNLAATLRKKELHKFVFSNKGTVASLGKGEAV 355
>gi|229916500|ref|YP_002885146.1| NADH dehydrogenase (ubiquinone) [Exiguobacterium sp. AT1b]
gi|229467929|gb|ACQ69701.1| NADH dehydrogenase (ubiquinone) [Exiguobacterium sp. AT1b]
Length = 403
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 179/418 (42%), Gaps = 79/418 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P I ILG GFGGL TA+ L+ + D + L+++ + L+E +G ++
Sbjct: 2 KRPNIVILGAGFGGLITAVNLQKTLAAGD--ANITLINKHDYHYQTTWLHEPAAGTMNPD 59
Query: 138 EIAPRFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ D++ + V+ K DRV T V LE G +VEYD+
Sbjct: 60 QARIYINDIVNPSRVKLVKGIVDRVD----------------TAAKQVTLEDGSVVEYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----SELERRNFGKDSLIRVAVV 250
+V+ LG P+ +PG E A S+L ++ + ++ + +S + + V
Sbjct: 104 VVIGLGGVPETFGIPGLKEHAMTISSLNSVRKIKEHIEYSFAQYKTNGSSDNSFVTIVVG 163
Query: 251 GCGYSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSA 300
G G++G+E + R+ E + V+ +N+E T+ P P A K L
Sbjct: 164 GAGFTGIEFLGEIVNRIPELCKQYDVPREAVRIVNIEAAPTVLPGFDPELTTYAQKWLER 223
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
V++ LG ++ + E G ++ P ++G ++
Sbjct: 224 NGVEMKLGNGIKGV-------------EPG--------------VVTFGP-LQGDTTETI 255
Query: 361 EADLVLWT--VGSKPLLPH--VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
A+ ++WT V P++ E NR+ E D GH +F +GD
Sbjct: 256 RANTIIWTGGVSGSPIIEKSGFEAVRNRV---------MVEADNR--APGHDNVFIIGDC 304
Query: 417 SALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA+ D +S RP P TAQ+A QQA N+ A IN + F +++ G + LG ND
Sbjct: 305 SAVMDPASNRPYPPTAQIATQQAHNVAKNIAALINGKSTSKFTYESKGTVASLGHNDG 362
>gi|308070613|ref|YP_003872218.1| NADH dehydrogenase-like protein yjlD [Paenibacillus polymyxa E681]
gi|305859892|gb|ADM71680.1| NADH dehydrogenase-like protein yjlD [Paenibacillus polymyxa E681]
Length = 396
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 174/412 (42%), Gaps = 78/412 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ADVTLINRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L+ V K VK + P + ++LE G + YD+LV+ L
Sbjct: 63 RIPIAQLIDEFKVDLVKGTVKEIIPKEK-------------KIVLEDGSL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNFGKDSLIRVAVVGCGYSG 256
G EP+ +PG +FA ++ ++ R+ R+ E + +N GK + V G G+SG
Sbjct: 109 GGEPETFGIPGMDKFALTIRSI-NSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGFSG 167
Query: 257 VELAATVSERLEEKG--------IVQAINVETTICPTGTPGNR----EAALKVLSARKVQ 304
+E A +++RL + +Q INVE PT PG E A+ VL + V
Sbjct: 168 IEFVAELADRLPQLARAYDIDFNRIQIINVEA--APTALPGFDPELVEYAMDVLKRKGVT 225
Query: 305 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+G ++ C LQ + E + EA
Sbjct: 226 FRIGIPIKEC----------------------------------LQDGVIVGEGEKIEAY 251
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N + RG+ + D+ L GH IF +GDSS + +
Sbjct: 252 TVVWTGGIR--------GNGLIEKAGFEVMRGRVKIDDFLRAPGHDDIFIIGDSSLMFNP 303
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
GRP P TAQ+A QQ NL A + + L F F N G + LG+ +A
Sbjct: 304 EGRPYPPTAQIAMQQGVLCAKNLAATLRKKELHKFVFSNKGTVASLGKGEAV 355
>gi|340345792|ref|ZP_08668924.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520933|gb|EGP94656.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum koreensis MY1]
Length = 452
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 210/459 (45%), Gaps = 61/459 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K K ++ ILGGGF G+ A +LES ++++ + ++++V + +F PML ++ SG ++
Sbjct: 3 KNKKKVVILGGGFAGVECARQLESF-FKNNSEVELVMVSEDNFLLFTPMLPQVASGIIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I + T +F++ R+K + P L T GT + G+ + YD+LV
Sbjct: 62 RHIVMPIRAICKKT--KFYEGRIKNVDPFGKL-------VTLWGTGE-KRGVSIYYDYLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL------ERRNFGKDSLIRVAVV 250
++LG+E + + A+ TL DA + ++ ++ E +DSL+ +V
Sbjct: 112 VALGSETNFFGMADVEKNAYTMKTLNDAVVLRNRVVDMLEQADNETDTILRDSLLTFVIV 171
Query: 251 GCGYSGVELAATVSERLEE---------KGIVQAINVETTICPTGTPGNREAALKVLSAR 301
G G++G+E A + + L + K ++ I +E P PG E +
Sbjct: 172 GGGFAGIETAGELLDLLLDARKHYPTIHKDDIRVIVLEA--LPMILPGFNEKLADFAKEK 229
Query: 302 KVQLVLGYFVRCIRRVGEF---EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
+Q G ++ V F E SVK + P + DK+ I G+ ++
Sbjct: 230 MIQR--GIEIKLRMAVTSFDGTEVSVKSLDEN--PKDSIDKSK----------INGIRTK 275
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
++WT G V P N + +G+ ++ L V P +FA+GD +
Sbjct: 276 T-----LIWTAG-------VTPVNTIKRSMFKTDKGKIIVNDFLEVPEFPGVFAIGDCAL 323
Query: 419 LRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
D + RP TAQ+A QA A NL A I + F + + G+M I+G+
Sbjct: 324 FMDPQTNRPFAPTAQIAEAQAKIAAHNLNALIKNSEKEKFVYHSKGQMAIIGKRTGI--A 381
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+F+ G+ + G + + YL ++P+ + ++++ + W+
Sbjct: 382 TFL-GMNISGFLAWLIWRNVYLSKIPSPDKKVRIFLDWI 419
>gi|334138535|ref|ZP_08511953.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF7]
gi|333603946|gb|EGL15342.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF7]
Length = 397
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 178/412 (43%), Gaps = 79/412 (19%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ILG G+GG+ T+LRL+ L+ ++ V LV++ + L+ +G
Sbjct: 5 PRIVILGAGYGGVVTSLRLQKLLNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDKPDNA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ V F K V + P + V+LE G + YD+LV+ L
Sbjct: 63 RVNISSLIDEFKVDFVKSTVVQIRPGEK-------------KVILEDGTL-SYDFLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD----SLIRVAVVGCGYS 255
G EP+ +PG E+A ++ ++ R R+ E + F ++ L+ V G G+S
Sbjct: 109 GGEPETFGIPGLKEYAMTIRSI-NSVRHIREHIEYQFARFKQEPDRKELLTFVVGGAGFS 167
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +++R+ E +V N+E PT PG E A+++L+ + V
Sbjct: 168 GIEFVGELADRIPELCKEFDVDPALVHIYNIEA--APTALPGFDPELVEYAMRLLTDKGV 225
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ ++ C PE G + IA D + +A
Sbjct: 226 TFKIATAIKEC------------TPE-GVL--IAGD-------------------EFIKA 251
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD 421
V+WT G + N+ L D RG+ + DE L G+ IF GD S + +
Sbjct: 252 GTVIWTGGIR--------GNHLLEDAGFETMRGRIKVDEFLRAPGYDNIFVTGDCSLVMN 303
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ+A QQ + NL A+I L F F N G + LG+ +A
Sbjct: 304 PEGRPYPPTAQIATQQGENCALNLVASIRGNALKEFAFVNRGTVASLGKGEA 355
>gi|374578529|ref|ZP_09651625.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM471]
gi|374426850|gb|EHR06383.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM471]
Length = 420
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 185/451 (41%), Gaps = 55/451 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------SPVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L+ + +D L GV+ C VL++ G V YD LVL+ G
Sbjct: 61 WPVRHLMRDR-----RDVTTLFATVS--GVDADRRC-----VLIDDGSEVPYDTLVLATG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGY 254
A +FA TLEDA + R + +E E + + + +VG G
Sbjct: 109 ARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFEHAERETDPAKRAARLTFVIVGAGP 168
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELA T++E N++T AR V + G
Sbjct: 169 TGVELAGTIAEMAHHTLPADFRNIDTN-----------------KARVVLIEAGP----- 206
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
R + F + ++ I + + + E+ ++ EA +W G +
Sbjct: 207 RVLAGFPDDLSAYAQASLEKIGVEVVLGQAVTEINREGVVFGGKLLEAKTRIWAAGVR-- 264
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
P P + G+ + + L + GHP IFA+GD+ + G+P+P A A
Sbjct: 265 ----ASPAAEWLGAPADRAGRVQVENDLTIPGHPEIFAIGDTVLINAWDGKPVPGIAPAA 320
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
QQ + + A + P PFR+++ G + +G+ A + ++ L G I
Sbjct: 321 KQQGRYVAETIKARLRKEPTGPFRYKHSGSLAQIGKRLAVIDFGRIK---LRGTIAWWIW 377
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+A++ L HRL V +SWL A D A
Sbjct: 378 GIAHIYFLIGLRHRLSVALSWLWIYARDQRA 408
>gi|333984106|ref|YP_004513316.1| NADH dehydrogenase (ubiquinone) [Methylomonas methanica MC09]
gi|333808147|gb|AEG00817.1| NADH dehydrogenase (ubiquinone) [Methylomonas methanica MC09]
Length = 428
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/445 (25%), Positives = 196/445 (44%), Gaps = 58/445 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL TA L ++ +V ++D++ +F+P+LY++ + E+ A EI
Sbjct: 9 PHVVIIGAGFGGLATAQVLS------NQAIRVTVIDKANHHLFQPLLYQVATAELTASEI 62
Query: 140 APRFADLLANTG-VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A + N V+ + VK G++ TV ESG+ ++YD+LVL+
Sbjct: 63 AVPIRHVFKNAANVEVILETVK--------GIDAERQ-----TVATESGMTIQYDFLVLA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGC 252
GA P G FA +++DA R+ + +E+E + +L+ +VG
Sbjct: 110 TGARPSYFNHDGWENFAPGLKSIDDAHRIKNLILLAFERAEIETDPQRRRALLTFVIVGG 169
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVELA V+E + K +V I P E++ +L ++ G+ +
Sbjct: 170 GPTGVELAGAVAE-ISRKALVHEFR---HIAP-------ESSRIILVDAGPNILKGFDEK 218
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+R ++K +S + + + + + P L+ V+W G
Sbjct: 219 LSKR------ALKDLKS-----LGVEVMNGIRVKSIGPDSVDLDGNQISTTSVIWAAGV- 266
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATA 431
P + + + D + V+G +I+A+GD+S + S PLP A
Sbjct: 267 -----TASPAAEWLGIQADHSQRIPVDANMAVRGFEQIYAIGDTSNYVPAGSDTPLPGVA 321
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
VA QQ F G + A ++ +PL F++++ G M +GRN A V + G L G
Sbjct: 322 AVAKQQGKFLGRYILALVSGKPLPTFKYRDFGSMATIGRNKAVVR---LLGWRLTGAFAW 378
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWL 516
+ ++ L R +V +W
Sbjct: 379 LLWGVVHIYFLIGFPRRFRVAFNWF 403
>gi|379719086|ref|YP_005311217.1| hypothetical protein PM3016_1136 [Paenibacillus mucilaginosus 3016]
gi|386721677|ref|YP_006188002.1| hypothetical protein B2K_05780 [Paenibacillus mucilaginosus K02]
gi|378567758|gb|AFC28068.1| YumB [Paenibacillus mucilaginosus 3016]
gi|384088801|gb|AFH60237.1| hypothetical protein B2K_05780 [Paenibacillus mucilaginosus K02]
Length = 396
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 172/411 (41%), Gaps = 77/411 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ILG G+GG+ TA+RL+ + ++ V LV++ + L+ +G +
Sbjct: 5 PRIVILGAGYGGIVTAIRLQKELNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDNPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ + F K V + P + V+LE G + YD+LV+ L
Sbjct: 63 RVNILKLIDEFKIDFVKSTVVQIRPQEK-------------KVILEEGTL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE----RRNFGKDSLIRVAVVGCGYS 255
G EP+ +PG E+A ++ ++ R R+ E + +R + + V G G++
Sbjct: 109 GGEPETFGIPGLKEYALNIRSI-NSVRFIREHIEYQFARFKREPSRTDYLTFIVGGAGFT 167
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +++R+ E +V+ NVE PT PG E A+ VL + V
Sbjct: 168 GIEFVGELADRIPELCKEFDVDPSLVKIYNVEA--APTALPGFDPELVEYAMNVLKNKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ ++ G A+ ++ +S
Sbjct: 226 TFKIATAIKECTPEGVVLATGEEIKSAT-------------------------------- 253
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N+ L + RG+ + DETL GH ++ LGD S +
Sbjct: 254 -VIWTGGIR--------GNHMLDEAGFETMRGRIKVDETLRAPGHENVYVLGDCSIVMSP 304
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ++ QQAD NL A I L F ++ G + LGR +A
Sbjct: 305 EGRPYPPTAQISMQQADVCAHNLVAQIRGSQLKSFEYKPKGTVASLGRGEA 355
>gi|375310126|ref|ZP_09775404.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. Aloe-11]
gi|375078079|gb|EHS56309.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. Aloe-11]
Length = 396
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 175/412 (42%), Gaps = 78/412 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ANVTLINRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L+ V K VK + P + ++LE G + YD+LV+ L
Sbjct: 63 RIPIAQLIDEFKVDLVKGTVKEIIPKEK-------------KIVLEDGSL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNFGKDSLIRVAVVGCGYSG 256
G EP+ +PG +FA ++ ++ R+ R+ E + +N GK + V G G+SG
Sbjct: 109 GGEPETFGIPGMDKFALTIRSI-NSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGFSG 167
Query: 257 VELAATVSERLEEKGI--------VQAINVETTICPTGTPGNR----EAALKVLSARKVQ 304
+E A +++RL + +Q INVE PT PG E A+ VL + V
Sbjct: 168 IEFVAELADRLPQLAKAYDIDFNRIQIINVEA--APTALPGFDPELVEYAMDVLKRKGVN 225
Query: 305 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+G ++ C+ E G I E + EA
Sbjct: 226 FRIGIPIKECL-------------EDGVIVG---------------------EGEKIEAC 251
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N + RG+ + D+ L H IF +GDSS + +
Sbjct: 252 TVVWTGGIR--------GNGLIEKAGFEVMRGRVKIDDFLRAPEHDDIFIIGDSSLMFNP 303
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
GRP P TAQ+A QQ NL A + ++ L F F N G + LG+ +A
Sbjct: 304 EGRPYPPTAQIAMQQGVICAKNLAATLRNKELNKFVFSNKGTVASLGKGEAV 355
>gi|421859050|ref|ZP_16291294.1| NADH dehydrogenase [Paenibacillus popilliae ATCC 14706]
gi|410831390|dbj|GAC41731.1| NADH dehydrogenase [Paenibacillus popilliae ATCC 14706]
Length = 398
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 181/412 (43%), Gaps = 78/412 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ A RL+ + + + V LV++ + F L+ +G D++E
Sbjct: 5 PKIVILGAGYGGIMAAQRLQKEL--NFNEADVTLVNKHDYHYFTTHLHMPAAG-TDSFEN 61
Query: 140 A-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A + L+ + F K VK + D V+LE G + +D+LV+
Sbjct: 62 AYVSISKLIDEFKIDFVKSTVKEIRVQDK-------------KVILEDGTL-SFDYLVIG 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE----LERRNFGKDSLIRVAVVGCGY 254
LG EP+ +PG E+AF ++ ++ R+ R+ E L +++ K + V G G+
Sbjct: 108 LGGEPETFGIPGLGEYAFSIRSI-NSVRIIREHIEHQFALFKQDESKKERLSFIVGGAGF 166
Query: 255 SGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 304
+G+E +S+R+ + V N+E T P PG E A+ VL + V
Sbjct: 167 TGIEFVGELSDRIPQLCKQFDVDPKRVHIYNIEAAPTALPGFDPGLVEYAIDVLKKKDVT 226
Query: 305 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
L ++ C PE +L IK A
Sbjct: 227 FKLATAIKEC------------TPEG--------------VVLATGEEIK--------AS 252
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD- 421
V+WT G + N + A RG+ + DE L GH IF +GD+S + +
Sbjct: 253 TVVWTGGIR--------GNRLIEQAGFEAMRGRVKVDEYLRAPGHDNIFIIGDNSLMMNP 304
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
++ RP P TAQ+A QQ N+ A+I ++PL F F N G + LG+ +A
Sbjct: 305 ANDRPYPPTAQMAMQQGPVCTSNIIASIRNQPLKKFEFHNKGTVASLGKGEA 356
>gi|430750923|ref|YP_007213831.1| NADH dehydrogenase, FAD-containing subunit [Thermobacillus composti
KWC4]
gi|430734888|gb|AGA58833.1| NADH dehydrogenase, FAD-containing subunit [Thermobacillus composti
KWC4]
Length = 397
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 180/414 (43%), Gaps = 83/414 (20%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TALRL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGVMTALRLQKQLNYNE--ADVTLVNKHDYHYITTHLHMPAAGTDSPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + F K V + P D V+LE G + YD+LV+ +
Sbjct: 63 RVSISKLIDEFKIDFVKSTVVQIRPQDR-------------KVILEDGTL-SYDYLVIGV 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE----RRNFGKDSLIRVAVVGCGYS 255
G EP+ +PG E+A ++ ++ R+ R+ E + +R + + V G G++
Sbjct: 109 GGEPETFGIPGLKEYALNIRSI-NSVRLIREHIEYQFAKYKREPHRTDYLTFIVGGAGFT 167
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +++R+ + +V+ IN+E PT PG E A+ VL + V
Sbjct: 168 GIEFVGELADRIPQLCREFDVDPQLVKLINIEA--APTALPGFDPELVEYAMDVLRKKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP--AIKGLESQIFE 361
+G ++ E +P I G E + +
Sbjct: 226 TFRIGTPIK----------------------------------ECKPDGVIVG-EGEEIK 250
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSAL 419
A V+WT G + NRL + RG+ + DE L GH ++ +GD+S +
Sbjct: 251 AQTVIWTGGIR---------GNRLIEEAGFETMRGRVKVDEYLRAPGHDNVYVVGDNSLV 301
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ GRP P TAQ+A QQ NL A+I ++ L F +++ G + LG+ +A
Sbjct: 302 FNEEGRPYPPTAQIAMQQGVAVAHNLVASIRNQALKKFEYKHKGTVASLGKGEA 355
>gi|374602826|ref|ZP_09675814.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus dendritiformis C454]
gi|374391585|gb|EHQ62919.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus dendritiformis C454]
Length = 398
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 181/413 (43%), Gaps = 80/413 (19%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ A RL+ + ++ V LV++ + F L+ +G D+++
Sbjct: 5 PKIVILGAGYGGIMAAQRLQKELNYNE--ADVTLVNKHDYHYFTTHLHMPAAG-TDSYDN 61
Query: 140 AP-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A + L+ + F K VK + D V+LE G + +D+LV+
Sbjct: 62 ARVSISKLIDEFKIDFVKSTVKEIRVQDK-------------KVILEDGTL-SFDYLVIG 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE----LERRNFGKDSLIRVAVVGCGY 254
LG EP+ +PG E+AF ++ ++ RV R+ E L +++ K + V G G+
Sbjct: 108 LGGEPETFGIPGLGEYAFSIRSI-NSVRVIREHIEHQFALFKQDESKKERLNFIVGGAGF 166
Query: 255 SGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARK 302
+G+E +S+R+ + +V N+E PT PG E A+ VL +
Sbjct: 167 TGIEFVGELSDRVPQLCKQFDVDPQLVHIYNIEA--APTALPGFDPELVEYAMDVLKKKG 224
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V L ++ + D +L IK A
Sbjct: 225 VTFKLATAIK-------------------------ECTPDGVVLATGEEIK--------A 251
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD 421
V+WT G + N + A RG+ + DE L GH IF +GD+S + +
Sbjct: 252 STVVWTGGIR--------GNRLIEQAGFEAMRGRVKVDEYLRAPGHDNIFIIGDNSLMIN 303
Query: 422 -SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
++ RP P TAQ+A QQ N+ A+I ++PL F F N G + LG+ +A
Sbjct: 304 PANDRPFPPTAQMAMQQGPVCTSNIVASIRNQPLKKFEFHNKGTVASLGKGEA 356
>gi|304408211|ref|ZP_07389860.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus curdlanolyticus YK9]
gi|304342899|gb|EFM08744.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus curdlanolyticus YK9]
Length = 401
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 178/413 (43%), Gaps = 75/413 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TALRL+ + ++ V LV++ + L+ +G +
Sbjct: 5 PKIVILGAGYGGVLTALRLQKQLNYNE--ADVTLVNKHDYHYITTHLHMPAAGTDNPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + F K V + P D V+LE G + YD+LV+ L
Sbjct: 63 RVSISKLIDEFKIDFVKSTVVQIRPQDK-------------KVILEDGTL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD----SLIRVAVVGCGYS 255
G EP+ +PG E A ++ ++ R+ R+ E + F ++ + V G G++
Sbjct: 109 GGEPETFGIPGLLENAMNIRSI-NSVRLIREHIEYQFARFKREPHRTDYLTFVVGGAGFT 167
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +++R+ E +V+ NVE P+ PG E A+ VL+ + V
Sbjct: 168 GIEFIGELADRIPELCREFDVDPNMVKIYNVEA--GPSALPGFDPELVEYAMNVLTKKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+G ++ + G ++P ++ +
Sbjct: 226 TFKIGTAIKSCSQDGVVVQKGEEP-----------------------------AEEIRSQ 256
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRD 421
V+W+ G + NRL + RG+ + D+ L G ++ +GD+S + +
Sbjct: 257 TVIWSGGVR---------GNRLIEEAGFETMRGRVKIDDNLRAPGSDHVYIVGDNSLMFN 307
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
GRP P TAQ+A QQ NL A+I ++PL F F N G + LG+ +A
Sbjct: 308 EDGRPYPPTAQIAMQQGVVCAHNLVASIRNQPLKKFVFSNKGTVASLGKGEAV 360
>gi|421474513|ref|ZP_15922545.1| NADH dehydrogenase [Burkholderia multivorans CF2]
gi|400232027|gb|EJO61675.1| NADH dehydrogenase [Burkholderia multivorans CF2]
Length = 430
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 178/399 (44%), Gaps = 41/399 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRTRRRVRLGEIRSQDGAVVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + A + L R+ +D +RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEALRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A + + + + R+G F
Sbjct: 183 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPK-ISASAQQQLERIG-F 236
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
+ A PN D + EADL++W G K P
Sbjct: 237 RVLTSTRVTSAAPN-GFHYGDDSFA---------------EADLMVWAAGVKA--PEFMQ 278
Query: 381 P-----NNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVA 434
NR + + + QA TDE RIFA+GD +S L D RPLP TAQVA
Sbjct: 279 ALGGLDTNRANQIVVGPTLQATTDE--------RIFAIGDCASLLPDGQERPLPPTAQVA 330
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
QQA+ +L A ++ +P+ F F + G ++ L DA
Sbjct: 331 TQQAEHLAKHLPAWLDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|390455460|ref|ZP_10240988.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus peoriae KCTC 3763]
Length = 396
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 110/413 (26%), Positives = 176/413 (42%), Gaps = 78/413 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 3 KIPKIVIVGAGYGGILTAQQLQKELKHNE--ANVTLINRHDYHYITTHLHMPAAGTDTIE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
A L+ V K VK + P + ++LE G + YD+LV+
Sbjct: 61 HSRIPIAQLIDEFKVDLVKGTVKEIIPKEK-------------KIVLEDGSL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNFGKDSLIRVAVVGCGY 254
LG EP+ + G +FA ++ ++ R+ R+ E + +N GK + V G G+
Sbjct: 107 GLGGEPETFGIAGMDKFALTIRSI-NSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGF 165
Query: 255 SGVELAATVSERLEEKGI--------VQAINVETTICPTGTPGNR----EAALKVLSARK 302
SG+E A +++RL + +Q INVE PT PG E A++VL +
Sbjct: 166 SGIEFVAELADRLSQLAKAYDIDFNRIQIINVEA--APTALPGFDPELVEYAMEVLKRKG 223
Query: 303 VQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V +G ++ C+ E G I E + E
Sbjct: 224 VNFRIGIPIKECL-------------EDGVIVG---------------------EGEKIE 249
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALR 420
A V+WT G + N + RG+ + D+ L H IF +GDSS +
Sbjct: 250 ACTVVWTGGIR--------GNGLIEQAGFEVMRGRVKIDDFLRAPDHDDIFIIGDSSLMF 301
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ GRP P TAQ+A QQ NL A + ++ L F F N G + LG+ +A
Sbjct: 302 NPEGRPYPPTAQIAMQQGVLCAKNLAATLRNKELNKFVFSNKGTVASLGKGEA 354
>gi|307106170|gb|EFN54417.1| hypothetical protein CHLNCDRAFT_135776 [Chlorella variabilis]
Length = 175
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 35/154 (22%)
Query: 397 ETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAAINDRPLL 455
+TD +L V HPR+FALGD S +P LPATAQVAFQQAD+ WNLWAAIN +P+L
Sbjct: 2 QTDASLRVLRHPRVFALGDISVSSGGREQPALPATAQVAFQQADYVAWNLWAAINAKPML 61
Query: 456 PFRFQNLGEMMILGRNDAAV-------------------------------SPSF---VE 481
F +Q+LG+MM LG AV S S+ +
Sbjct: 62 SFSYQHLGDMMSLGTTSGAVTLPIPVPPQLSAAVQAAGPLGQLLKAAGVKLSGSYGGGAD 121
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
GVTL+GP+ + R+ AYL R PT E +L+V W
Sbjct: 122 GVTLEGPLAAAVRRAAYLYRQPTLEQQLRVAGGW 155
>gi|357009393|ref|ZP_09074392.1| YumB [Paenibacillus elgii B69]
Length = 396
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 171/411 (41%), Gaps = 77/411 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ILG G+GG+ TA+RL+ + ++ V LV++ + L+ +G +
Sbjct: 5 PRIVILGAGYGGIVTAIRLQKELNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDNPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ + F K V + P + V+LE G + YD+LV+ L
Sbjct: 63 RVNILKLIDEFKIDFVKSTVVQIRPQEK-------------KVILEEGTL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD----SLIRVAVVGCGYS 255
G EP+ +PG E+A ++ ++ R R+ E + F ++ + V G G++
Sbjct: 109 GGEPETFGIPGLKEYAMNIRSI-NSVRFIREHVEYQFAKFKREPSRTDYLTFVVGGAGFT 167
Query: 256 GVELAATVSERLE--------EKGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +++R+ + V+ N+E PT PG E A+ VL + V
Sbjct: 168 GIEFVGELADRIPDLCKEFDVDPSFVKIYNIEA--APTALPGFDPELVEYAMNVLKNKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ ++ + D +L IK +
Sbjct: 226 TFKIATAIK-------------------------ECTPDGVVLATGEEIK--------SA 252
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N+ L + RG+ + D+TL GH ++ LGD S +
Sbjct: 253 TVIWTGGIR--------GNHMLDEAGFETMRGRIKVDDTLHAPGHDNVYVLGDCSIVMSP 304
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ++ QQAD NL A I L F ++ G + LGR +A
Sbjct: 305 EGRPYPPTAQISMQQADVCAHNLVAQIRGSELKKFEYKPKGTVASLGRGEA 355
>gi|269928842|ref|YP_003321163.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
gi|269788199|gb|ACZ40341.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
Length = 451
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 207/468 (44%), Gaps = 89/468 (19%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+++ PRI ILGGGF G+YTA L+ + + ++ +V++ FVF P++ E++SG ++
Sbjct: 8 ERQAPRIVILGGGFAGVYTAFELQKRLRR--TPAEIAIVNRENFFVFYPLIPEIVSGAIE 65
Query: 136 AWEI-------APRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187
I PR + TG+ + RV + HG +
Sbjct: 66 TEHILNPIRLLVPRATLYVGEITGIDLAEQRVDI---------------RHGLYRHRQQP 110
Query: 188 LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGK 241
+ YD LVL+LG P + +VPG E+AF L A + L ++E K
Sbjct: 111 RSLYYDHLVLALGGVPNVGLVPGLGEYAFDVQRLSHAFALRNHLIDILEQGDIETDPVAK 170
Query: 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGI-----------VQAINVETTICPTGTPGN 290
L+ V VVG G +GVE+ A V++ L + + ++ + P
Sbjct: 171 ARLLTVVVVGGGANGVEVVAEVTDLLYDAAKHYRHLSTDDFRIVLVHGGDRLIPDLPENL 230
Query: 291 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350
A + L +R V+++LG RRV E +
Sbjct: 231 GRFAEQQLRSRGVEVILG------RRVASVEPT--------------------------- 257
Query: 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHP 408
A++ + + E + V+ +VG PN + DLPL + RG+ DE + V+G
Sbjct: 258 AVRLDDGTVIETETVVGSVGVM--------PNPLVRDLPLPKDERGRLIVDEYMAVEGQD 309
Query: 409 RIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
++ALGD++ + D ++G+P P TAQ A ++A N+ A + R P ++ LG+M+
Sbjct: 310 NVWALGDNARVPDPTTGQPYPQTAQHAIREARVLAHNVAARLRGRSPKPIAYRTLGQMVA 369
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
LG A V+ + G T G + YL +LP E RL+V + W
Sbjct: 370 LGHRSAVVN---LRGWTFSGFPAWWLFRTYYLSQLPRWEKRLRVTLDW 414
>gi|170737889|ref|YP_001779149.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia MC0-3]
gi|169820077|gb|ACA94659.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia cenocepacia MC0-3]
Length = 430
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 176/404 (43%), Gaps = 51/404 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + G V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRTRRRVQLGEIRSQDGDVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + + A + L R+ +D RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVET-------TICPTGTPGNREAALKV-LSARKVQLVLGYFVR 312
A +S LE + QA +T T+ +G K+ SA++ +G+ V
Sbjct: 183 AELSRLLE---VAQAYGDDTVRERLQLTLLESGPRILNAFPPKISASAQRRLEQIGFRVL 239
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
RV +AD N Y + EADL++W G
Sbjct: 240 TSTRV-----------------TSADANGFHY----------GDGSFAEADLMVWAAG-- 270
Query: 373 PLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPA 429
V+ P+ L L N Q TL G +FA+GD S L D RPLP
Sbjct: 271 -----VKAPDFMQALGGLDTNRANQIVVGPTLQATGDEHVFAIGDCGSLLPDGQERPLPP 325
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
TAQVA QQA+ +L A ++ P+ PF F + G ++ + DA
Sbjct: 326 TAQVATQQAEHLAKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|254250287|ref|ZP_04943607.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia
cenocepacia PC184]
gi|124876788|gb|EAY66778.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia
cenocepacia PC184]
Length = 430
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 179/406 (44%), Gaps = 55/406 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + G V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRARRRVQLGEIRSQDGDVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + + A + L R+ +D RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVET-------TICPTGTPGNREAALKVLSA---RKVQLVLGYF 310
A +S LE + QA +T T+ +G P A +SA R+++ + G+
Sbjct: 183 AELSRLLE---VAQAYGDDTVRERLQLTLLESG-PRILNAFPPRISASAQRRLEQI-GFR 237
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
V RV +AD N Y + EADL++W G
Sbjct: 238 VLTSTRV-----------------TSADANGFHY----------GDGSFAEADLMVWAAG 270
Query: 371 SKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPL 427
V+ P+ L L N Q TL G +FA+GD S L D RPL
Sbjct: 271 -------VKAPDFMQALGGLDTNHANQIVVGPTLQATGDEHVFAIGDCGSLLPDGQERPL 323
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQVA QQA+ +L A ++ P+ PF F + G ++ + DA
Sbjct: 324 PPTAQVATQQAEHLAKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|107025971|ref|YP_623482.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia AU 1054]
gi|116692845|ref|YP_838378.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia HI2424]
gi|105895345|gb|ABF78509.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia AU 1054]
gi|116650845|gb|ABK11485.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia cenocepacia HI2424]
Length = 430
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 179/406 (44%), Gaps = 55/406 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + G V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRTRRRVQLGEIRSQDGDVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + + A + L R+ +D RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVET-------TICPTGTPGNREAALKVLSA---RKVQLVLGYF 310
A +S LE + QA +T T+ +G P A +SA R+++ + G+
Sbjct: 183 AELSRLLE---VAQAYGDDTVRERLQLTLLESG-PRILNAFPPRISASAQRRLEQI-GFR 237
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
V RV +AD N Y + EADL++W G
Sbjct: 238 VLTSTRV-----------------TSADANGFHY----------GDGSFAEADLMVWAAG 270
Query: 371 SKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPL 427
V+ P+ L L N Q TL G +FA+GD S L D RPL
Sbjct: 271 -------VKAPDFMQALGGLDTNRANQIVVGPTLQATGDEHVFAIGDCGSLLPDGQERPL 323
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQVA QQA+ +L A ++ P+ PF F + G ++ + DA
Sbjct: 324 PPTAQVATQQAEHLAKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|255658997|ref|ZP_05404406.1| NADH dehydrogenase [Mitsuokella multacida DSM 20544]
gi|260848957|gb|EEX68964.1| NADH dehydrogenase [Mitsuokella multacida DSM 20544]
Length = 421
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 197/459 (42%), Gaps = 79/459 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++KKPRI I+G GFGG ++L L +++ VLLVD+ +F+P+LY++ + +
Sbjct: 4 NQKKPRIVIVGAGFGG----VKLAKLFAKEN--VDVLLVDRHNFQLFQPLLYQVSTAVLS 57
Query: 136 AWEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
EIA P A + V+FF + + GV+ VLL + + YD+
Sbjct: 58 TDEIAYPVRAFFRKSRNVEFFMAKAE--------GVD------QARKVLLTNHGEIAYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VA 248
L+L+ GA + ++ TL++A + + L ER N D +R
Sbjct: 104 LILAAGATTNYFGMQEVEAHSYGMKTLQEALHIRNHVLHMFERANKETDPEVRRRMLTFV 163
Query: 249 VVGCGYSGVELAATVSER--LEEKGI---------VQAINVETTICPTGTPGNREAALKV 297
VVG G +G+E + ++E +++K V+ I + P P RE A+KV
Sbjct: 164 VVGGGPTGIEESGALTELFGIQQKEFHNLDFSEVSVKLIEATANVLPMVAPNLREHAVKV 223
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L + V ++L V VG +K + IP
Sbjct: 224 LRKKGVDVMLNTQV-----VGYDGNDLKLKDGTTIP------------------------ 254
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
V+W G K +P ++ ++ G+ +E L V+G +FA+GD +
Sbjct: 255 ----TQTVIWAAGVKA-VPFIKDCGGE-----VDRGGRIIVNEKLQVEGSDCVFAIGDCA 304
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDAAVS 476
+ + RPLP A VA QQA A N+ I + L F +++LG M +GR +A V
Sbjct: 305 HYQHGTERPLPTVAPVAMQQAQTAHDNIMKLIQGQQDLATFHYKDLGAMATIGRGEAVVD 364
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ + + G I A +L+RL V + W
Sbjct: 365 KTKINP-QMTGFIAWCAWMFVHLLRLAGAHANFTVAIKW 402
>gi|375093904|ref|ZP_09740169.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
marina XMU15]
gi|374654637|gb|EHR49470.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
marina XMU15]
Length = 435
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 209/450 (46%), Gaps = 65/450 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I GGG+ GLYTALRL+ + + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIAGGGYVGLYTALRLQRRLRRGEA--EVTVVNPENYMVYRPLLPEVASGTLE----- 56
Query: 141 PRFADLLANT---GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
PR A + G +F R+ + + P A L ++YD LV+
Sbjct: 57 PRHAVVPLRAVLRGSRFIAGRLTGIDAERKVASVAPTAGPW---------LDLDYDELVI 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVG 251
LGA KL VPG AE F++L +A + D L +LE + D+ +R VG
Sbjct: 108 GLGATSKLVPVPGLAEAGIGFNSLAEAAHLRDHVLRQLEIASATTDTELRKRALTFVFVG 167
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
GY+GVE A + + AI+V G P L A +++ VL V
Sbjct: 168 GGYTGVEAIAELQD--------MAIDV-----LEGYP--------ELDASEMRWVL---V 203
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG----LESQIFEADLVLW 367
+ R+ ++ A+ + + +L+ +G + F +D ++W
Sbjct: 204 EAMDRI--LTTVSRELADRAMTELTGRGIDIRLGTQLESVEEGELRLSDGSKFFSDTLVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRP 426
G++P E LP++ RG+ D+ + V+GHP I+A GD +A+ D +G
Sbjct: 262 VAGTRPQSIVGE------LGLPVDGRGRLVVDQAMRVEGHPGIWAAGDCAAVPDREAGGV 315
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
P TAQ A +QA+ G NL A + PF++++ GE + LG+N AV +F G D
Sbjct: 316 SPPTAQHAVRQAEQLGDNLVATMRGEWPRPFKYRSRGEFVTLGKNK-AVGEAF--GREFD 372
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G + + R+ Y ++PT ++V WL
Sbjct: 373 GALAWTLRRAYYATQIPTWNRTIRVLGDWL 402
>gi|452751029|ref|ZP_21950775.1| NADH dehydrogenase [alpha proteobacterium JLT2015]
gi|451961179|gb|EMD83589.1| NADH dehydrogenase [alpha proteobacterium JLT2015]
Length = 434
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 193/446 (43%), Gaps = 60/446 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GFGG+ A L + +V LVD++ +F+P+LY++ + + +
Sbjct: 5 RPRIVIVGSGFGGMAAARALRRV------SAKVTLVDRTNHHLFQPLLYQVATAALSPAD 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA AN + +++L V G T VLL G + YD+LVL+
Sbjct: 59 IAT------ANRVLLRGSSNMRVLMAE----VTGIDTATR--AVLLRDGRRLPYDYLVLA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKD-----SLIRVAVVGC 252
GA E A +LEDA + R L ER D L+ A+VG
Sbjct: 107 TGAAYSFFGHDEWREHAMVLKSLEDALAIRARLLDAFERAEQSSDPAETRRLLTFAIVGG 166
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR-EAALKVLSARKVQLVLGYFV 311
G +GVELA T++E L + + T I P GT EA ++LSA
Sbjct: 167 GPTGVELAGTIAE-LARTTLARDF---TCIDPQGTRVVLCEAGERLLSA----------- 211
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
F+ ++ + A+ ++ + + + + L + +A VLW G+
Sbjct: 212 --------FDPALSAYAADALASLGVEVRTGTAVEAIDSTGLMLGEERIDAGAVLWCAGT 263
Query: 372 KPLLPHVEPPNNRL-HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ P L + N Q ETD V GHP IFA+GD ++ GRPLP
Sbjct: 264 E-----ARPAARWLGAEAARNGAVQVETD--CSVPGHPEIFAIGDVASFDGGEGRPLPGL 316
Query: 431 AQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 489
A VA QQ G L A + R FR+++ G M ++GR A + G+ L G +
Sbjct: 317 APVAKQQGAHVGRLLAARVAGRSEPGAFRYRDHGTMAVIGRARAVAR---LGGMQLKGFV 373
Query: 490 GHSARKLAYLIRLPTDEHRLKVGVSW 515
A L +L+ L RL V V+W
Sbjct: 374 AWLAWSLVHLLLLVDFRSRLLVYVNW 399
>gi|115358883|ref|YP_776021.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
gi|115284171|gb|ABI89687.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
Length = 433
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 177/407 (43%), Gaps = 51/407 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D
Sbjct: 6 RPARIVIVGGGIAGLQLATRLGERLGRSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQ 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ F + G + +K L + + G LL +EYD L+L
Sbjct: 65 QQQVIFLAHARDHGYTYQPGELKGLDRARRRVQLAEIRSPEGE--LLVDARELEYDVLIL 122
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+LG++ VPG E + + + A + L R+ +D RVA+VG G +GV
Sbjct: 123 ALGSQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGV 182
Query: 258 ELAATVSERLEEKGIVQAINVET-------TICPTGTPGNREAALKVLSA---RKVQLVL 307
ELAA +S LE I QA ET T+ +G P A +SA R+++ +
Sbjct: 183 ELAAELSRLLE---IAQAYGDETVRERLQLTLLESG-PRILAAFPPRISASAQRRLEQI- 237
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V RV +AD N Y + EADL++W
Sbjct: 238 GIHVLTSTRV-----------------TSADANGFHYG----------DGSFAEADLMVW 270
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRP 426
G K L L N Q TL +FA+GD ++L+ D RP
Sbjct: 271 AAGVK-----ASDFMQALGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGHERP 325
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQVA QQA+ +L A ++ +PL PF F + G ++ + DA
Sbjct: 326 LPPTAQVATQQAEHLAKHLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|393795833|ref|ZP_10379197.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum limnia BG20]
Length = 452
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/465 (25%), Positives = 208/465 (44%), Gaps = 61/465 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K K +I ILGGGF G+ A +LES + D+ + +++++ + +F PML ++ SG ++
Sbjct: 3 KNKKKIVILGGGFAGVECARQLES-DFGDNSEIELVMISEDNFLLFTPMLPQVASGMIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I ++ T +F++ RVK + P L T GT + G+ + YD+LV
Sbjct: 62 RHIVMPIREICKKT--KFYEGRVKNVDPFGKL-------VTLWGTAD-KRGISIHYDYLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRN-----FGKDSLIRVAVV 250
++LG+E + + A+ TL DA + +R + LE+ +DS + VV
Sbjct: 112 VALGSETNFFGMADVEKNAYTMKTLNDAVVLRNRAIDMLEQAENETDVILRDSFLTFVVV 171
Query: 251 GCGYSGVELAATVSERLEE---------KGIVQAINVETTICPTGTPGNREAALKVLSAR 301
G G++G+E A + + L + K ++ I +E P PG E K +
Sbjct: 172 GGGFAGIETAGELLDLLLDARKHYHTIHKEDIRVIVLEA--LPMILPGFNEKLAKFSKEK 229
Query: 302 KVQLVLGYFVRCIRRVGEF---EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
++ G +R V F E +VK + ++ DKN G++S
Sbjct: 230 MIER--GIDIRLKTAVTSFDGIEVNVKSLDENLKDSV--DKN-------------GIDS- 271
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
++WT G V P N + +G+ ++ L V P +FA+GD +
Sbjct: 272 -IRTKTLIWTAG-------VTPVNTIKRSMLKTDKGKVIVNDFLEVTEFPGVFAIGDCAL 323
Query: 419 LRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
D + RP TAQ+A QA A +NL A I + F + + G+M I+G+
Sbjct: 324 FMDPQTNRPYAPTAQLAEAQAKIAAYNLKALIKNFEKKKFVYHSKGQMAIIGKRTGI--A 381
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
+F+ G+ + G + + YL ++ + ++ + W+ D
Sbjct: 382 TFL-GMNISGFLAWLIWRNVYLSKVALPNKKFRIFLDWVIDILFD 425
>gi|172063618|ref|YP_001811269.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria MC40-6]
gi|171996135|gb|ACB67053.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MC40-6]
Length = 433
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 181/407 (44%), Gaps = 51/407 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D
Sbjct: 6 RPARIVIVGGGIAGLQLATRLGERLGRSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDLQ 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ F + G + +K L + V + G +L+++ + EYD L+L
Sbjct: 65 QQQVIFLAHARDHGYTYQPGELKGLDRARRR-VQLREIRSPDGELLIDAREL-EYDVLIL 122
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+LG++ VPG E + + + A + L R+ +D RVA+VG G +GV
Sbjct: 123 ALGSQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGV 182
Query: 258 ELAATVSERLEEKGIVQAINVET-------TICPTGTPGNREAALKVLSA---RKVQLVL 307
ELAA +S LE I QA ET T+ +G P A +SA R+++ +
Sbjct: 183 ELAAELSRLLE---IAQAYGDETVRERLQLTLLESG-PRILAAFPPRISASAQRRLEQI- 237
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V RV AAD N Y + EADL++W
Sbjct: 238 GIHVLTSTRV-----------------TAADANGFHYG----------DGSFAEADLMVW 270
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRP 426
G K L L N Q TL +FA+GD ++L+ D RP
Sbjct: 271 AAGVK-----ASDFMQALGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGQQRP 325
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQVA QQA+ +L A ++ +PL PF F + G ++ + DA
Sbjct: 326 LPPTAQVATQQAEHLAKHLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|229551508|ref|ZP_04440233.1| NADH dehydrogenase [Lactobacillus rhamnosus LMS2-1]
gi|385836456|ref|YP_005874231.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Lactobacillus rhamnosus ATCC 8530]
gi|229315132|gb|EEN81105.1| NADH dehydrogenase [Lactobacillus rhamnosus LMS2-1]
gi|355395948|gb|AER65378.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Lactobacillus rhamnosus ATCC 8530]
Length = 395
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 178/403 (44%), Gaps = 68/403 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VILENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSL---IRVAVVGCGYSGVE 258
+ +PGAAE A P + A + + + EL N+ + + V V G G++GVE
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTI-ELRVANYKQSQDPKDLTVIVAGAGFTGVE 165
Query: 259 LAATVSERL------EEKGIVQAINVE--TTICPTGTPGNREAALKVLSARKVQLVLGYF 310
L ++ L + V+ I++E T I P A+ L + V ++ G
Sbjct: 166 LLGELTHSLPALAKKYDTPPVKIISMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG-- 223
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+ + + E A+ + AD + +K + E + ++WTVG
Sbjct: 224 -----------SKITKIEPNAV--VYADGDQEKKV---------------EGNTIIWTVG 255
Query: 371 SKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
++ + D N R + L + HP +F +GD SA+ +GRP P
Sbjct: 256 VSG--------SDVIADSGFNQRRNRVVVSNHLNLTDHPEVFIIGDVSAVMTDAGRPYPT 307
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
TAQ++ Q+ D AG N+ AA+N +PL F +++ G + LG D
Sbjct: 308 TAQISSQEGDHAGKNVAAALNGQPLTDFVYKSKGTVASLGSQD 350
>gi|421469090|ref|ZP_15917578.1| NADH dehydrogenase [Burkholderia multivorans ATCC BAA-247]
gi|400230603|gb|EJO60370.1| NADH dehydrogenase [Burkholderia multivorans ATCC BAA-247]
Length = 430
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 173/396 (43%), Gaps = 35/396 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRRRRRVRLGEIRSQDGALVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + A + L R+ +D +RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEALRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A + + + + R+G F
Sbjct: 183 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPK-ISASAQQQLERIG-F 236
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
+ A PN D + EADL++W G V+
Sbjct: 237 RVLTSTRVTSAAPN-GFHYGDDSFA---------------EADLMVWAAG-------VKA 273
Query: 381 PN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQ 437
P L L N Q TL IFA+GD +S L D RPLP TAQVA QQ
Sbjct: 274 PEFMQALGGLDTNRANQIVVGPTLQATADEHIFAIGDCASLLPDGQERPLPPTAQVATQQ 333
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A+ +L A ++ +P+ F F + G ++ L DA
Sbjct: 334 AEHLAKHLPAWLDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|386399050|ref|ZP_10083828.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM1253]
gi|385739676|gb|EIG59872.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM1253]
Length = 420
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/451 (25%), Positives = 182/451 (40%), Gaps = 55/451 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------SPVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L+ + +D L GV+ C VL++ G V YD LVL+ G
Sbjct: 61 WPVRHLMRDR-----RDVTTLFAAVS--GVDADRRC-----VLIDDGSEVPYDTLVLATG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVA-----VVGCGY 254
A +FA TLEDA + R L ER D R A +VG G
Sbjct: 109 ARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPAKRAARLTFVIVGAGP 168
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELA T++E N++T AR V + G
Sbjct: 169 TGVELAGTIAEMAHHTLPADFRNIDTN-----------------KARVVLIEAGP----- 206
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
R + F + ++ I + + + E+ + +A +W G +
Sbjct: 207 RVLAGFPDDLSAYAQASLEKIGVEVVLGQAVTEIDRDGVVFGGERLDAKTKIWAAGVR-- 264
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
P P + G+ + + L + GHP IFA+GD+ + G+P+P A A
Sbjct: 265 ----ASPAAEWLGAPADRAGRVQVEADLTIPGHPEIFAIGDTVLINAWDGKPVPGIAPAA 320
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
QQ + A + P PFR+++ G + +G+ A + ++ L G I
Sbjct: 321 KQQGRHVAETIKARLRQEPTGPFRYKHSGSLAQIGKRLAVIDFGRIK---LRGTIAWWIW 377
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+A++ L HRL V +SWL A D A
Sbjct: 378 GIAHIYFLIGLRHRLSVALSWLWIYARDQRA 408
>gi|161520473|ref|YP_001583900.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189353336|ref|YP_001948963.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
gi|160344523|gb|ABX17608.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189337358|dbj|BAG46427.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
Length = 430
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 174/396 (43%), Gaps = 35/396 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRTRRRVRLGEIRSQDGAVVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + A + L R+ +D +RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEALRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A + + + + R+G F
Sbjct: 183 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPK-ISASAQQQLERIG-F 236
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
+ A PN D + EADL++W G V+
Sbjct: 237 RVLTSTRVTSAAPN-GFHYGDDSFA---------------EADLMVWAAG-------VKA 273
Query: 381 PN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQ 437
P L L N Q TL IFA+GD +S L D RPLP TAQVA QQ
Sbjct: 274 PEFMQALGGLDTNRANQIVVGPTLQATADEHIFAIGDCASLLPDGQERPLPPTAQVATQQ 333
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A+ +L A ++ +P+ F F + G ++ L DA
Sbjct: 334 AEHLAKHLPAWLDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|421770143|ref|ZP_16206844.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP2]
gi|421772779|ref|ZP_16209432.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP3]
gi|411182671|gb|EKS49816.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP2]
gi|411183193|gb|EKS50333.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP3]
Length = 395
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 180/404 (44%), Gaps = 70/404 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K+ + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKETTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPK-DVQFIQSKVSKVDVSSKL-------------VVLENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDA----CRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+ +PGAAE A P + A ++++++ ++ KD + V V G G++GV
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTIEQRVANYQQSQDPKD--LTVIVAGAGFTGV 164
Query: 258 ELAATVSERLE------EKGIVQAINVE--TTICPTGTPGNREAALKVLSARKVQLVLGY 309
EL ++ L + V+ I++E T I P A+ L + V ++ G
Sbjct: 165 ELLGELTHSLPALAKKYDTPPVKIISMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG- 223
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ + + E A+ + AD + +K + E + ++WTV
Sbjct: 224 ------------SKITKIEPNAV--VYADGDQEKKV---------------EGNTIIWTV 254
Query: 370 GSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G ++ + D N R + L + HP +F +GD SA+ +GRP P
Sbjct: 255 GVSG--------SDVIADSGFNQRRNRVVVSNHLNLTDHPEVFIIGDVSAVMTDAGRPYP 306
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
TAQ++ Q+ D AG N+ AA+N +PL F ++ G + LG D
Sbjct: 307 TTAQISSQEGDHAGKNVAAALNGQPLTDFVYKPKGTVASLGSQD 350
>gi|402568462|ref|YP_006617806.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
gi|402249659|gb|AFQ50112.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
Length = 430
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 183/412 (44%), Gaps = 67/412 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + ++ +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGEHLGRAGRA-RITVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYDW 194
F LA+ +D P + G++ G + + G +V EYD
Sbjct: 65 VIF---LAHA-----RDHGYTYQPGELKGLDRARRRVQLGAIRSQDGQLVIDARELEYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
L+L+LG++ VPG E + + + A + L R+ +D RVA+VG G
Sbjct: 117 LILALGSQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGA 176
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA----------RKVQ 304
+GVELAA +S LE + QA + T+ E+ ++L+A R+++
Sbjct: 177 TGVELAAELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPKISASAQRRLE 232
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+ G+ V RV +AD N Y + EADL
Sbjct: 233 QI-GFQVLTSTRV-----------------TSADANGFHYG----------DGSFAEADL 264
Query: 365 VLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-D 421
++W G V+ P+ L L N Q TL +FA+GD ++L+ D
Sbjct: 265 MVWAAG-------VKAPDFMQALGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPD 317
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQVA QQA+ +L A ++ +PL PF F + G ++ + DA
Sbjct: 318 GHERPLPPTAQVATQQAEHLAKHLPAWLDGKPLPPFAFHDFGALVSISDYDA 369
>gi|418071079|ref|ZP_12708353.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus R0011]
gi|423080229|ref|ZP_17068854.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus ATCC 21052]
gi|357538573|gb|EHJ22593.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus R0011]
gi|357543372|gb|EHJ25395.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus ATCC 21052]
Length = 395
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 180/404 (44%), Gaps = 70/404 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VVLENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDA----CRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+ +PGAAE A P + A ++++++ ++ KD + V V G G++GV
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTIEQRVANYKQSQDPKD--LTVIVAGAGFTGV 164
Query: 258 ELAATVSERLE------EKGIVQAINVE--TTICPTGTPGNREAALKVLSARKVQLVLGY 309
EL ++ L + V+ I++E T I P A+ L + V ++ G
Sbjct: 165 ELLGELTHSLPALAKKYDTPPVKIISMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG- 223
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ + + E A+ + AD + +K + E + ++WTV
Sbjct: 224 ------------SKITKIEPNAV--VYADGDQEKKV---------------EGNTIIWTV 254
Query: 370 GSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G ++ + D N R + L + HP +F +GD SA+ +GRP P
Sbjct: 255 GVSG--------SDVIADSGFNQRRNRVVVSNHLNLTDHPEVFIIGDVSAVMTDAGRPYP 306
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
TAQ++ Q+ D AG N+ AA+N +PL F +++ G + LG D
Sbjct: 307 TTAQISSQEGDHAGKNVAAALNGQPLTDFVYKSKGTVASLGSQD 350
>gi|269837682|ref|YP_003319910.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
gi|269786945|gb|ACZ39088.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
Length = 451
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 176/421 (41%), Gaps = 81/421 (19%)
Query: 78 KKPRICILGGGFGGL--YTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++ + + G GFGG+ ALR L D +LL+DQ +F P+LY++ +G VD
Sbjct: 39 RRASVVVAGAGFGGIAVLNALRNAGLDGAD-----ILLIDQHNYHLFTPLLYQVATGSVD 93
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
IA A +F ++ + D + V ++G I YD+L
Sbjct: 94 DQHIAYPLRPFCAGVPAEFLCTTIRGVNLVDQV-------------VETDAGRI-RYDYL 139
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKDS-----LIRVAV 249
VL+LG++ + A T+ A + R + +ER D L+ AV
Sbjct: 140 VLALGSQTNYFGMHEVEREALGLKTIPAASSIRARIIDSVERAAVASDPEERRWLLTFAV 199
Query: 250 VGCGYSGVELAATV-------------SERLEEKGIVQAINVETTICPTGTPGNREAALK 296
VG G +GVEL A++ S R EE IV I TI P TP R A +
Sbjct: 200 VGAGATGVELVASLDDLLRNNLLPYYPSLRGEEPRIVL-IEAMDTILPGTTPRMRAIAER 258
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L + + L V +R +GA+ A D+
Sbjct: 259 RLKDLGIDIRLKTAVAGVR-------------NGALVTRAGDE----------------- 288
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
A ++WT G +P P + D G+ DE L + P +FALGD+
Sbjct: 289 ---IAAATLIWTAGIRPNPVAASLPVEKSRD------GRIVVDEYLRIPSAPNVFALGDN 339
Query: 417 SALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ + D +SG PLPA A VA ++ G NL + PL PF F++ GEM+ LGR AA
Sbjct: 340 AFVPDQNSGAPLPANASVAVREGAAVGRNLVRLLTGHPLEPFVFRSPGEMIALGRGHAAA 399
Query: 476 S 476
+
Sbjct: 400 T 400
>gi|221196015|ref|ZP_03569062.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
gi|221202689|ref|ZP_03575708.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221176623|gb|EEE09051.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221182569|gb|EEE14969.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
Length = 430
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 172/396 (43%), Gaps = 35/396 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRRRRRVRLGEIRSQDGALVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + A + L R+ +D +RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEALRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A + + + + R+G F
Sbjct: 183 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPK-ISASAQQQLERIG-F 236
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
+ A PN D + EADL++W G V+
Sbjct: 237 RVLTSTRVTSAAPN-GFHYGDDSFA---------------EADLMVWAAG-------VKA 273
Query: 381 PN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQ 437
P L L N Q TL IFA+GD + L D RPLP TAQVA QQ
Sbjct: 274 PEFMQALGGLDTNRANQIVVGPTLQATADEHIFAIGDCAGLLPDGQERPLPPTAQVATQQ 333
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A+ +L A ++ +P+ F F + G ++ L DA
Sbjct: 334 AEHLAKHLPAWLDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|145220177|ref|YP_001130886.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeovibrioides DSM 265]
gi|145206341|gb|ABP37384.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeovibrioides DSM 265]
Length = 438
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/445 (24%), Positives = 192/445 (43%), Gaps = 59/445 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF GL A L + +DD ++L+D+ +F+P+LY++ +D +
Sbjct: 11 KKRVVIVGGGFTGLRAARILGN---RDDL--DIVLIDRRNYHLFQPLLYQVAMSALDEGD 65
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LAN + +K V+ + TV + G V YD+L+L
Sbjct: 66 IAAPLRNMLANYNNITVYKGIVERVNAESK-------------TVTTDFGE-VAYDYLIL 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRN--FGKDSLIRVAVVG 251
+ G G ++A T+ A + R++ E ER N + L+ +VG
Sbjct: 112 ACGVRHHYFGNNGWEQYAPGLKTISQAKEIRRRVLEAYEAAERTNDPVERKKLLTFVIVG 171
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++ E +R K+ +L + V
Sbjct: 172 GGPTGVELAGSIGEM-----------------------SRYTLSKLYRQIDPKLTRIFIV 208
Query: 312 RCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
R+ G F+ ++ + ++ + ++ + ++ + ++ EA VLW G
Sbjct: 209 EAAPRILGTFDRNLASKATRSLEQLGVQIWTNSMVSDVDENGVQIGNERIEAATVLWAAG 268
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ + PN+ + R E D L + GHP IF GD + L + +G+PLP
Sbjct: 269 ----VTAIAIPNDMGAETDRIGRFVVEGD--LSIPGHPEIFVGGDQACLLNEAGKPLPGM 322
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A VA Q+ F G + + + PF++ + G+M +G+N A V + + DG
Sbjct: 323 APVAIQEGHFIGKTILRDLKGKERKPFKYTDKGQMATIGKNRAIVE---IGNIQFDGAPA 379
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSW 515
L ++ L + +HR+ V + W
Sbjct: 380 WFTWLLVHIYYLTSFKHRVFVLMQW 404
>gi|167589902|ref|ZP_02382290.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ubonensis Bu]
Length = 433
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 178/406 (43%), Gaps = 55/406 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 9 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 67
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+LSLG
Sbjct: 68 VIFLAHAREHGYTYQPGELQGLDRARRRVQLGEIRSQDGERVLEAREL--EYDVLILSLG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + A + L R+ +D +RVA+VG G +GVELA
Sbjct: 126 SQANDFGVPGVREHCYFIDSQRQAETFNEALRMRVFRSVARDEPLRVAIVGAGATGVELA 185
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA----------RKVQLVLGYF 310
A +S LE + QA +TT+ E+ ++L+A R+++ + G+
Sbjct: 186 AELSRLLE---VAQAYG-DTTVRERLRLTLLESGPRILAAFPPRISASAQRRLEQI-GFH 240
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
V RV +AD Y + EADL++W G
Sbjct: 241 VLTSTRVS-----------------SADARGFHYG----------DGSFAEADLMVWAAG 273
Query: 371 SKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPL 427
V+ P+ L L N Q TL G +FA+GD +S L D RPL
Sbjct: 274 -------VKAPDFMQALGGLDTNRANQIVVGPTLQATGDAHVFAIGDCASLLPDGYERPL 326
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQVA QQA+ +L A ++ +P+ F F + G ++ + DA
Sbjct: 327 PPTAQVATQQAEHLAKHLPAWLDGKPMPAFAFHDFGALVSISDYDA 372
>gi|404328954|ref|ZP_10969402.1| putative NADH dehydrogenase [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 400
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 177/411 (43%), Gaps = 74/411 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI ILG G+GGL T +L+++ D ++LV++++ +L+E+ +G +A
Sbjct: 3 KKRIVILGAGYGGLRTLKKLQNMHPDAD----LVLVNKNDYHCETTLLHEVAAGSTEAKG 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I ++ + F +D V+ + + G ++ E+ + YD+L+++
Sbjct: 59 ICYPIKQVVDSRQTIFIQDTVQYVDRA-------------GKKIIFEAHPPLSYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-----ERRNFGKDSLIRVAVVGCG 253
LG E + + G E+A S + + R + E R+ ++ + V V G G
Sbjct: 106 LGFESESFGIQGIPEYAMSISDIPSVNHIRRHIHHQLAAWQEDRD---ETHLTVVVGGAG 162
Query: 254 YSGVELAATVSERLEEKGIVQAINVET--TICPTGTPG-----NR---EAALKVLSARKV 303
++ E ++ RL + I+ + IC TP NR E + L+ R V
Sbjct: 163 FTSFEFLGELTNRLPKLAARYHIDKDQLHVICIEPTPHVLPMFNRPIAEYGSRKLAERGV 222
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ V+G R +P K+ D + + A
Sbjct: 223 RFVIGRVNR------------------VVPGHVYYKHED-------------DLSVIHAG 251
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-S 422
+WT G + +E + RG+ + L V G+P I +GD SA+ D
Sbjct: 252 TFIWTGGVRGSSV-IEASGF------IQKRGRVNVNADLTVPGNPEIMIIGDCSAVIDPE 304
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+GRP P TAQ+A QQAD A NL A I R L PF ++ G + LGRNDA
Sbjct: 305 NGRPYPTTAQIAIQQADCAAHNLNARIQGRALKPFVYKYKGTVCSLGRNDA 355
>gi|221209719|ref|ZP_03582700.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
gi|221170407|gb|EEE02873.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
Length = 430
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 176/399 (44%), Gaps = 41/399 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGGA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRTRRRVRLGEIRSQDGAVVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + A + L R+ +D +RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEALRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A + + + + R+G F
Sbjct: 183 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPK-ISASAQQQLERIG-F 236
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
+ A PN D + EADL++W G K P
Sbjct: 237 RVLTSTRVTSAAPN-GFHYGDDSFA---------------EADLMVWAAGVKA--PEFMQ 278
Query: 381 P-----NNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVA 434
NR + + + QA TDE IFA+GD +S L D RPLP TAQVA
Sbjct: 279 ALGGLDTNRANQIVVGPTLQATTDE--------HIFAIGDCASLLPDGQERPLPPTAQVA 330
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
QQA+ +L A ++ +P+ F F + G ++ L DA
Sbjct: 331 TQQAEHLAKHLPAWLDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|170700340|ref|ZP_02891352.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
gi|170134774|gb|EDT03090.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
Length = 433
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 178/394 (45%), Gaps = 31/394 (7%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 9 RIVIVGGGIAGLQLATRLGERLGRSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 67
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + V + G +LL++ + EYD L+L+LG
Sbjct: 68 VIFLAHARDHGYTYQPGELKGLDRARRR-VQLSEIRSPDGELLLDAREL-EYDVLILALG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + + A + L R+ +D RVA+VG G +GVELA
Sbjct: 126 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGVELA 185
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A ++ RR+ +
Sbjct: 186 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPRIS----ASAQRRLEQI 237
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
V + +AD N Y + EADL++W G K
Sbjct: 238 GIHVLT----STRVTSADANGFHYG----------DGSFAEADLMVWAAGVK-----ASD 278
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQAD 439
L L N Q TL +FA+GD ++L+ D RPLP TAQVA QQA+
Sbjct: 279 FMQALGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGQERPLPPTAQVATQQAE 338
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+L A ++ +PL PF F + G ++ + DA
Sbjct: 339 HLAKHLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|374708668|ref|ZP_09713102.1| putative NADH dehydrogenase [Sporolactobacillus inulinus CASD]
Length = 396
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 180/412 (43%), Gaps = 76/412 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDA 136
+ RI ILG G+GGL T RL+ + KP +++L+D+++ K L+E+ +G +A
Sbjct: 2 RKRIVILGAGYGGLRTLKRLQRM------KPNAELILIDKNDYHCEKTSLHEVAAGTANA 55
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EI ++ QF +D V L V+ + L+ + YD+LV
Sbjct: 56 DEICYSLQQVIDPKRTQFIQDTV--------LRVD-----RESRRIQLKEHKPISYDYLV 102
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER---RNFGKDSLIRVAVVGCG 253
+ LG P+ + G F S + R+ + + + + D L+ +AV G G
Sbjct: 103 IGLGFVPEYYGIEGMDRFGLAISDIPSVIRIRNHIEDQFKAWTEDQRSDRLV-IAVGGAG 161
Query: 254 YSGVELAATVSERLEEKGIVQAINVETT--ICPTGTPG-----NREAAL---KVLSARKV 303
++ E +++R+ E ++ + +C TP NR+ A + L R V
Sbjct: 162 FTSFEFLGELTQRIPELITRYQVDAKQVRIVCIEPTPKALPMFNRQLAAYGSRKLRNRGV 221
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
++G RV F+ + K + ++ L++ F
Sbjct: 222 DFLIG-------RVCGFDGA-------------------KIYYRTKEQVQSLKAGTF--- 252
Query: 364 LVLWTVG-SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD- 421
+WT G S + R RG+ + L V GHP I +GD SA+ D
Sbjct: 253 --VWTGGVSGSAVVRDSGFEER--------RGRVRVMDDLSVPGHPEILIIGDCSAVIDP 302
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SG+P P TAQ+A QQAD A +N+ A ++DRP F F+ G + LGR+DA
Sbjct: 303 GSGQPYPTTAQIALQQADCAAYNVKAMLDDRPTKSFVFKFKGTVCSLGRDDA 354
>gi|416929412|ref|ZP_11933377.1| NADH dehydrogenase [Burkholderia sp. TJI49]
gi|325525947|gb|EGD03639.1| NADH dehydrogenase [Burkholderia sp. TJI49]
Length = 430
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 174/396 (43%), Gaps = 35/396 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRARRRVRLGEIRSQDGALVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + A + L R+ +D +RVA+VG G +GVELA
Sbjct: 123 SQANDFGVPGVREHCYFIDSQPQAEAFNEALRMRVFRSVARDEALRVAIVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A + + + + R+G F
Sbjct: 183 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPK-ISASAQQQLERIG-F 236
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
+ A PN D + EADL++W G V+
Sbjct: 237 RVLTSTRVTSAAPN-GFHYGDDSFA---------------EADLMVWAAG-------VKA 273
Query: 381 PN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQ 437
P L L N Q TL IFA+GD +S L D RPLP TAQVA QQ
Sbjct: 274 PEFMQALGGLDTNRANQIVVGPTLQTTADEHIFAIGDCASLLPDGQERPLPPTAQVATQQ 333
Query: 438 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A+ +L A ++ +P+ F F + G ++ L DA
Sbjct: 334 AEHLAKHLPAWLDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|199597879|ref|ZP_03211305.1| NADH dehydrogenase, FAD-containing subunit [Lactobacillus rhamnosus
HN001]
gi|258509542|ref|YP_003172293.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus GG]
gi|385829165|ref|YP_005866937.1| NADH dehydrogenase [Lactobacillus rhamnosus GG]
gi|199591315|gb|EDY99395.1| NADH dehydrogenase, FAD-containing subunit [Lactobacillus rhamnosus
HN001]
gi|257149469|emb|CAR88442.1| Pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
rhamnosus GG]
gi|259650810|dbj|BAI42972.1| NADH dehydrogenase [Lactobacillus rhamnosus GG]
Length = 395
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 179/404 (44%), Gaps = 70/404 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VVLENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDA----CRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+ +PGAAE A P + A ++++++ ++ KD + V V G G++GV
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTIEQRVANYKQSQDPKD--LTVIVAGAGFTGV 164
Query: 258 ELAATVSERLE------EKGIVQAINVE--TTICPTGTPGNREAALKVLSARKVQLVLGY 309
EL ++ L + V+ I++E T I P A+ L + V ++ G
Sbjct: 165 ELLGELTHSLPALAKKYDTPPVKIISMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG- 223
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ + + E A+ + AD + +K + E + ++WTV
Sbjct: 224 ------------SKITKIEPNAV--VYADGDQEKKV---------------EGNTIIWTV 254
Query: 370 GSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G ++ + D N R + L + HP +F +GD SA+ +GRP P
Sbjct: 255 GVSG--------SDVIADSGFNQRRNRVVVSNHLNLTDHPEVFIIGDVSAVMTDAGRPYP 306
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
TAQ++ Q+ D AG N+ AA+N +PL F ++ G + LG D
Sbjct: 307 TTAQISSQEGDHAGKNVAAALNGQPLTDFVYKPKGTVASLGSQD 350
>gi|258652064|ref|YP_003201220.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nakamurella multipartita DSM 44233]
gi|258555289|gb|ACV78231.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nakamurella multipartita DSM 44233]
Length = 431
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 176/424 (41%), Gaps = 66/424 (15%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGG G+ A L D V L D+ + F+P+LY++ S ++ A +IA
Sbjct: 5 IIIGGGMAGVACASELA------DHDVDVTLFDRHDYTQFQPLLYQVASSQLPAEDIARP 58
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPM--ACTHGGTVLLESGLIVEYDWLVLSLG 200
+ F R + ++ G++ T G ES + D+LV++ G
Sbjct: 59 LS-------TAFADQRRVVTVTAEVTGIDPATRTVVTKDGENAGESTVDYTADYLVIAAG 111
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIRVAVVGCGYSGVE 258
++ VPGAAE ++P T+EDA R+ + L + RR + V V G G +GVE
Sbjct: 112 SQANFFGVPGAAEHSYPLYTVEDARRLRQHLRDRLRRLSDPATAEPYTVIVCGGGPTGVE 171
Query: 259 LAATVSE---RLEEKGIVQA------INVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
A ++E L+++G + A ++ + T E A L + VQ+ G
Sbjct: 172 TAGALAELFGALKDQGTLHAEATVRLVDHGHALLKPFTDKTHEYARAKLIEKGVQITFGV 231
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
V ++ +D L + D V+W
Sbjct: 232 AVAAVQ-------------------------ADTATLS--------DGSTVATDTVIWAG 258
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G PP L L G+ + L V G+P +FA+GD + + D SG LP
Sbjct: 259 GIS------GPPIVSTTGLSLGHGGRIDVAADLTVPGNPGVFAVGDVANIPDGSGHALPQ 312
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 489
VA Q +AG N+ A P+ PF + + G M ++GRN AAVS L+GP+
Sbjct: 313 LGSVAQQSGKWAGKNIVAHRKGAPVTPFHYHDKGIMAMIGRN-AAVSEIGKHRHHLEGPM 371
Query: 490 GHSA 493
+ A
Sbjct: 372 AYVA 375
>gi|383774975|ref|YP_005454044.1| NADH dehydrogenase [Bradyrhizobium sp. S23321]
gi|381363102|dbj|BAL79932.1| NADH dehydrogenase [Bradyrhizobium sp. S23321]
Length = 420
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 185/452 (40%), Gaps = 57/452 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLEATYRLAG------APVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ +DR ++ + GV+ C VL++ G V YD LVL+
Sbjct: 61 WPIRHLM--------RDRREVTTLFATVSGVDADRRC-----VLIDDGSEVPYDTLVLAT 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVA-----VVGCG 253
GA +FA TLEDA + R L ER D R A +VG G
Sbjct: 108 GARHAYFGHDEWEQFAPGLKTLEDATTLRRHILLAFERAERETDPARRAARLTFVIVGAG 167
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+GVELA T++E N++TT AR V + G
Sbjct: 168 PTGVELAGTIAEMAHHTLPGDFRNIDTT-----------------KARVVLIEAGP---- 206
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
R + F + ++ I + + + E+ ++ EA +W G +
Sbjct: 207 -RVLAGFPDDLSAYAQASLERIGVEVVLGQAVTEINREGVVFGGKLLEAKTRIWAAGVRA 265
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P P + G+ + + L + GHP IFA+GD+ ++ G+P+P A
Sbjct: 266 ------SPAAEWLGAPSDRAGRVQVEADLTIPGHPEIFAIGDTVSIDAWEGKPVPGIAPA 319
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A QQ + A + PFR+++ G + +G+ A + V+ L G I
Sbjct: 320 AKQQGKHVAETIKARLRGAATGPFRYKHAGSLAQIGKRLAVIDFGKVK---LRGTIAWWI 376
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+A++ L HRL V +SWL A D A
Sbjct: 377 WGIAHIYFLIGLRHRLSVALSWLWIYARDQRA 408
>gi|410457406|ref|ZP_11311218.1| NADH dehydrogenase [Bacillus bataviensis LMG 21833]
gi|409925237|gb|EKN62457.1| NADH dehydrogenase [Bacillus bataviensis LMG 21833]
Length = 405
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 179/417 (42%), Gaps = 78/417 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP+I ILG G+GGL T +RL+ L+ ++ ++LV++++ L+E +G +
Sbjct: 2 RKPKIVILGAGYGGLLTTVRLQKLIGVNE--ADIVLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ ++++ + V F +D V + + V+LE G V YD+LV+
Sbjct: 60 KVRYDVSNVIDRSKVDFVQDTVVEINKDEK-------------KVILEKGE-VNYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG--------KDSLIRVAV 249
+LG EP+ + G E+AF + + + R+L E F D+ + + V
Sbjct: 106 ALGGEPETFGIKGLKEYAFGITNVNSS----RQLREHIEYQFATYNMEAEKNDNRLSIVV 161
Query: 250 VGCGYSGVELAATVSERLEE----------KGIVQAINVETTICPTGTPGNREAALKVLS 299
G G++G+E ++ R+ E K + + T+ P P A+ L
Sbjct: 162 GGAGFTGIEFLGELTNRIPELCHEYDVDFQKVKITCVEAAPTVLPGFDPELVNYAVSTLE 221
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
+ V+ ++G ++K+ GAI D+ E
Sbjct: 222 RKGVEFLIG-------------TAIKEATPGAILVGKGDE----------------EPYE 252
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS- 417
+A+ V+W G + N + A RG+ + + L G +F +GDSS
Sbjct: 253 IKAETVVWAAGVR--------GNAIIEKSGFEAMRGRVKVNPDLRAPGFDNVFIIGDSSL 304
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 473
+ + RP P TAQ+A QQ + N+ A I N L F F N G + LG +DA
Sbjct: 305 VINEEINRPYPPTAQIAMQQGELVARNIGALIRNKTDLETFSFDNKGTVCSLGEDDA 361
>gi|78061849|ref|YP_371757.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. 383]
gi|77969734|gb|ABB11113.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. 383]
Length = 430
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 181/412 (43%), Gaps = 67/412 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QVTIVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYDW 194
F LA+ +D P + G++ G + + G +V EYD
Sbjct: 65 VIF---LAHA-----RDHGYSYQPGELTGLDRARRRVQLGEIRSQDGELVLEARELEYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
L+L+LG++ VPG + + + + A + L R+ +D RVA+VG G
Sbjct: 117 LILALGSQANDFGVPGVRDHCYFIDSQKQAETFNEALRVRVFRSIARDEPFRVAIVGAGA 176
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA----------RKVQ 304
+GVELAA +S LE + QA + T+ E+ ++L+A R+++
Sbjct: 177 TGVELAAELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPRISASAQRRLE 232
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+ G+ V RV +A N Y + EADL
Sbjct: 233 QI-GFHVLTSTRV-----------------TSAAANGFHYG----------DGSFAEADL 264
Query: 365 VLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRD 421
++W G V+ P+ L L N Q TL G +FA+GD +S L D
Sbjct: 265 MVWAAG-------VKAPDFMQALDGLDTNRANQIVVGPTLQATGDDHVFAIGDCASLLPD 317
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQVA QQA+ +L A + +P+ PF F + G ++ + DA
Sbjct: 318 GHERPLPPTAQVATQQAEHLAKHLPAWLEGKPIPPFAFHDFGALVSISDYDA 369
>gi|257054899|ref|YP_003132731.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
viridis DSM 43017]
gi|256584771|gb|ACU95904.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
viridis DSM 43017]
Length = 431
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 120/448 (26%), Positives = 200/448 (44%), Gaps = 61/448 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP---QVLLVDQSERFVFKPMLYELLSGEVDAW 137
RI I GGG+ GLYTAL+L Q + +P +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIAGGGYVGLYTALQL-----QKNMQPGEVEVTVVNPENFMVYRPLLPEVASGTLEPR 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L + +F + L + P A G T E YD LVL
Sbjct: 59 HAVVPLRAVLRKS--RFVSGTLTGLDVERRVATVQPPA---GPTREFE------YDELVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVG 251
LGA KL +PG + F++L +A + D L +LE + D +R VG
Sbjct: 108 GLGATSKLLPIPGLVDHGIGFNSLAEAAYLRDHVLGQLELAHATNDPELRRCALTFVFVG 167
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
GY+GVE A + + A++V G PG A ++ + + +LG
Sbjct: 168 GGYTGVEAIAELQD--------MAVDVLE-----GYPGLDPAEMRWILIEAMDRILGTVS 214
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
+ + E + + + I ++++ L+L K D ++W G+
Sbjct: 215 DDLAELATTELTARGID---IRTGTLLESAENGRLQLSDGTK------LTTDTLVWVAGT 265
Query: 372 KP--LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLP 428
+P +L + LP++ RG+ D+TL V GH I++ GD +A+ D G P
Sbjct: 266 RPQSILGEL--------GLPVDERGRVVVDDTLRVNGHANIWSAGDCAAVPDLVKGGTCP 317
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
+AQ A +QA G NL + + + FR+++ GE + LG+N A V G ++G
Sbjct: 318 PSAQYAVRQARQLGDNLLRTVRGQAVKSFRYRSRGEFVTLGKNKAVAE---VLGCKINGS 374
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + R+ Y ++P ++V WL
Sbjct: 375 LAWTLRRAYYATQIPMLNRTVRVLGDWL 402
>gi|261409227|ref|YP_003245468.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. Y412MC10]
gi|329926911|ref|ZP_08281314.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF5]
gi|261285690|gb|ACX67661.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. Y412MC10]
gi|328938898|gb|EGG35271.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF5]
Length = 397
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 178/417 (42%), Gaps = 89/417 (21%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYITTHLHMPAAG------- 55
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D + NT V K D K+ D + + H V+LE G + YD+LV+
Sbjct: 56 ----TDSIENTRVSISKLIDEFKI----DLVKSSVQEIRLHDKKVILEDGTL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-------LSELERRNFGKDSLIRVAVV 250
LG EP+ +PG AE A ++ ++ R+ R+ L + ERR I V
Sbjct: 107 GLGGEPETFGIPGLAEHAMTIRSI-NSVRLIREHIEYQFALYKNERR---PQERINFVVG 162
Query: 251 GCGYSGVELAATVSERLE--------EKGIVQAINVETTICPTGTPGNR----EAALKVL 298
G G+SG+E A +++R+ + +V NVE P+ PG E A+ VL
Sbjct: 163 GAGFSGIEFVAELADRIPRLCKEYDVDPTLVNIYNVEA--APSALPGFAPELVEYAMNVL 220
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
+ V +G ++K+ +P N ++
Sbjct: 221 EKKGVTFKMG-------------IAIKE----CLPGGVVLNNGEE--------------- 248
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDS 416
A V+WT G + NRL + RG+ + DE L G+ I+ +GD+
Sbjct: 249 -IRAATVVWTGGIR---------GNRLVESAGFETMRGRVKVDEYLRAPGYENIYIIGDN 298
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
S + + GRP P TAQ+A QQ N+ AAI D+ + F F N G + LGR +
Sbjct: 299 SLIFNEEGRPYPPTAQMAMQQGVCCAQNIVAAIRDKSMRKFEFHNKGTVASLGRGEG 355
>gi|365899628|ref|ZP_09437519.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. STM 3843]
gi|365419589|emb|CCE10061.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. STM 3843]
Length = 424
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 123/476 (25%), Positives = 198/476 (41%), Gaps = 85/476 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 11 VVIVGAGFGGLETTHRLAG------APVRITLIDRRNHHLFQPLLYQVATASLSTSEIA- 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL----------LESGLIVE 191
P +L + P T GTV LE G V
Sbjct: 64 ---------------------WPIRYLVRDRPEVTTLFGTVTGIDAANRRVQLEDGTEVA 102
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLI 245
YD LVL+ GA FA TLEDA + R++ +E E + +L+
Sbjct: 103 YDTLVLATGARHAYFGHDEWEPFAPGLKTLEDATTLRRRILVAFERAERETDPAKRAALM 162
Query: 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR----EAALKVLSAR 301
++G G +GVELA T++E N++T G R EA +VL+
Sbjct: 163 TFVIIGAGPTGVELAGTIAELARSTLPPDFRNIDTH-------GTRVLLIEAGPRVLAGF 215
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
L Y ++ + R+G E + QP + D N+D + + +
Sbjct: 216 PDDLS-AYALKSLERIG-VEVVLGQPVT--------DCNADGVVYG---------GKQLD 256
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
A ++W G + + P + G+ + L V GHP IFA+GD+ +
Sbjct: 257 AKTIIWAAGVR------ASRAAEWLNAPADRAGRLQVAPDLTVPGHPEIFAIGDTITIPA 310
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+G+P+P A A Q+ + + A + R L PFR+ + G + +G+ A + +++
Sbjct: 311 WNGQPVPGIAPAAKQEGRYVAEAIKARLGGRSLSPFRYSHAGSLAQIGKRLAVIDFGWLK 370
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA--LLQSTLTKVL 535
L G I LA++ L +RL V +SWL A D A L+ +KV+
Sbjct: 371 ---LRGAIAWWIWGLAHIYFLIGLRNRLAVALSWLWIHARDQRAARLITQGSSKVM 423
>gi|403510307|ref|YP_006641945.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Nocardiopsis alba ATCC BAA-2165]
gi|402799133|gb|AFR06543.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Nocardiopsis alba ATCC BAA-2165]
Length = 458
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 122/463 (26%), Positives = 192/463 (41%), Gaps = 91/463 (19%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I I+GGG+ G+YTA RLE + + + + ++D + ++P L E G I
Sbjct: 20 PHILIVGGGYLGMYTARRLEKKLGAGEAR--ITVIDPNSYMTYQPFLPETAGGN-----I 72
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPS----DHLGVNGPMACTHGGTVLLESGL----I 189
+PR N V K DRV++L DH TV E +
Sbjct: 73 SPR------NVVVPLRKVFDRVRVLGGRVVRIDHAD----------NTVRYEPNVGEPQT 116
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRV- 247
+ YD+LV++ GA + +PG AE+ T+E+A + + L++L + D IR
Sbjct: 117 LHYDYLVMAAGAVSRTLPIPGLAEWGIGIKTVEEAAYLRNHVLNQLTIADSTDDKDIRAK 176
Query: 248 ----AVVGCGYSGVELAATVSERLEEK-----GIVQA------INVETTICPTGTPGNRE 292
VG G++G E A + + + + I Q+ I I P P
Sbjct: 177 ALNFVFVGGGFAGAEAIAELEDLVRDAVRLYPSIDQSEVKFYLIEAADKILPEVGPEVGG 236
Query: 293 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 352
AL L R + + L F+ E++V Q I
Sbjct: 237 KALNQLRRRDIDVRLKTFL---------ESAVDQ------------------------HI 263
Query: 353 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 412
K + F+A ++WT G KP P DLPL +G +T E L V G +FA
Sbjct: 264 KLSDGTEFDAGTLVWTAGVKP------SPVVSASDLPLGPKGHVDTSEYLTVNGTDNVFA 317
Query: 413 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
GD++ + D +G P AQ A +QA N+ A + L ++ +NLG + LG +
Sbjct: 318 GGDNAQVPDGNGGYYPPNAQNAVRQAPVLADNIIATLRGNDLTAYKHKNLGAVAGLGLHK 377
Query: 473 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
A + L+G + A + +L+ +PT +L+V W
Sbjct: 378 GAA--QLFGKIKLNGRLAWYAHRSYHLLAVPTFNRKLRVLSDW 418
>gi|269839149|ref|YP_003323841.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermobaculum terrenum ATCC BAA-798]
gi|269790879|gb|ACZ43019.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Thermobaculum terrenum ATCC BAA-798]
Length = 428
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 120/454 (26%), Positives = 192/454 (42%), Gaps = 66/454 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P++ +LGGGF G+ A L + + ++ LV+++ VF P+L E+ GE+D
Sbjct: 5 EPQVVVLGGGFAGMSAAHELA----RQLPRARITLVNRTNFAVFTPLLTEVAVGEIDLRH 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A L + V F + V+ + PSD + V + + G L E L + YD LV++
Sbjct: 61 AAVNLRSL--SRRVSFQQGEVEDVSPSDRV-VRVRVGSSDAG--LPEKQLELPYDHLVVA 115
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDS-----LIRVAVVGC 252
LG+ V A + +F TLEDA + + L E N D L+ VG
Sbjct: 116 LGSVTNFHHVASAEQHSFGMKTLEDAANLYNHILGAFELANALSDDGEHQRLLTFVTVGG 175
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G SGVE A A+N P A ++V +++ + R
Sbjct: 176 GLSGVETTA-------------AVNAFVRRLVLRYPNLHPADVRV-------VLVHHGSR 215
Query: 313 CIRRVGEFEASVKQPE---SGA-------IPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +GE A+ E SG + +A D + +KG +
Sbjct: 216 LLEELGERLAAYTHQELERSGVEVLLRTELSEVAGDHVT----------LKG--GRQIRT 263
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G P P +R+ + P A G + D L V GHP ++A+GD + +
Sbjct: 264 KTVVWTAGVAP-----NPIVDRI-EAPKGAHGGLKVDPYLSVPGHPGLWAVGDCAEVPRV 317
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
G TAQ A ++ N+ R PFR+ +GE+ ++GR A ++G
Sbjct: 318 GGGSYAPTAQNATREGRTVAANIALVSQGRAPRPFRYSPIGELALVGRRSAIAD---LKG 374
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ L G + YL ++P+ RL+V WL
Sbjct: 375 IKLSGLPAWLLWRGVYLAKIPSGSQRLRVAADWL 408
>gi|315649376|ref|ZP_07902465.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus vortex V453]
gi|315275364|gb|EFU38733.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus vortex V453]
Length = 397
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 177/417 (42%), Gaps = 89/417 (21%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYITTHLHMPAAG------- 55
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D + NT V K D K+ D + + H V+LE G + YD+LV+
Sbjct: 56 ----TDSIENTRVSISKLIDEFKI----DLVKSSVQEIRLHDKKVILEDGTL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-------LSELERRNFGKDSLIRVAVV 250
LG EP+ +PG AE A ++ ++ R+ R+ L + ERR I V
Sbjct: 107 GLGGEPETFGIPGLAEHAMTIRSI-NSVRLIREHIEYQFALYKNERR---PQERINFVVG 162
Query: 251 GCGYSGVELAATVSERLE--------EKGIVQAINVETTICPTGTPGNR----EAALKVL 298
G G+SG+E A +++R+ + +V NVE P PG E A+ VL
Sbjct: 163 GAGFSGIEFVAELADRIPRLCKEYDVDPTLVNIYNVEA--APAALPGFAPELVEYAMNVL 220
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
+ V +G ++K+ +P N ++
Sbjct: 221 EKKGVTFKMG-------------IAIKE----CLPGGVVLNNGEE--------------- 248
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDS 416
A V+WT G + NRL + RG+ + DE L G+ I+ +GD+
Sbjct: 249 -IRAATVVWTGGIR---------GNRLVEAAGFETMRGRVKVDEYLRAPGYENIYIIGDN 298
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
S + + GRP P TAQ+A QQ N+ AAI D+ + F F N G + LGR +
Sbjct: 299 SLIFNEEGRPYPPTAQMAMQQGVCCAQNIVAAIRDKSMRKFEFSNKGTVASLGRGEG 355
>gi|258540746|ref|YP_003175245.1| pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
rhamnosus Lc 705]
gi|257152422|emb|CAR91394.1| Pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
rhamnosus Lc 705]
Length = 395
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 177/403 (43%), Gaps = 68/403 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VILENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSL---IRVAVVGCGYSGVE 258
+ + GAAE A P + A + + + EL N+ + + V V G G++GVE
Sbjct: 107 RSEDFGLLGAAENALPLDNVTSAETIAKTI-ELRVANYKQSQDPKDLTVIVAGAGFTGVE 165
Query: 259 LAATVSERL------EEKGIVQAINVE--TTICPTGTPGNREAALKVLSARKVQLVLGYF 310
L ++ L + V+ I++E T I P A+ L + V ++ G
Sbjct: 166 LLGELTHSLPALAKKYDTPPVKIISMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG-- 223
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+ + + E A+ + AD + +K + E + ++WTVG
Sbjct: 224 -----------SKITKIEPNAV--VYADGDQEKKV---------------EGNTIIWTVG 255
Query: 371 SKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
++ + D N R + L + HP +F +GD SA+ +GRP P
Sbjct: 256 VSG--------SDVIADSGFNQRRNRVVVSNHLNLTDHPEVFIIGDVSAVMTDAGRPYPT 307
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
TAQ++ Q+ D AG N+ AA+N +PL F +++ G + LG D
Sbjct: 308 TAQISSQEGDHAGKNVAAALNGQPLTDFVYKSKGTVASLGSQD 350
>gi|335038466|ref|ZP_08531709.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Caldalkalibacillus thermarum TA2.A1]
gi|334181643|gb|EGL84165.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Caldalkalibacillus thermarum TA2.A1]
Length = 399
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 179/412 (43%), Gaps = 73/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP I ILG G+GG+ AL L+ + ++ + LV++++ L++ +G + +
Sbjct: 3 KPSIVILGAGYGGIVAALGLQKRLNYNEA--DITLVNKNDYHYITTELHQPAAGTMHHDQ 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+L+ ++F KD V + V L++G + YD+LV+
Sbjct: 61 ARVGIKELIDEKKIKFVKDTVVAIDREQQ-------------KVTLQNGEL-HYDYLVVG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG----KDSLIRVAVVGCGY 254
LG+EP+ + G E AF +++ ++ R+ R+ E + F + + + V G G+
Sbjct: 107 LGSEPETFGIEGLREHAFSINSI-NSVRIIRQHIEYQFAKFAAEPERTDYLTIVVGGAGF 165
Query: 255 SGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 304
+G+E +++R+ E +V+ INVE T+ P P A+ VL + V+
Sbjct: 166 TGIEFVGELADRMPELCAEYDVDPKLVRIINVEAAPTVLPGFDPALVNYAMDVLGGKGVE 225
Query: 305 LVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+G + RC PE I + G E +I +A
Sbjct: 226 FKIGTPIKRC------------TPEGVVI------------------EVDGEEEEI-KAA 254
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRD 421
V+WT G + N+ + RG+ + D L GH IF +GD + + +
Sbjct: 255 TVVWTGGVR--------GNSIVEKSGFETMRGRIKVDPYLRAPGHENIFIVGDCALIINE 306
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A Q + NL A I + PF+ G + LGRNDA
Sbjct: 307 ENNRPYPPTAQIAIQHGENVAANLAALIRGGSMTPFKPHIRGTVASLGRNDA 358
>gi|108803940|ref|YP_643877.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
gi|108765183|gb|ABG04065.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
Length = 430
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/450 (25%), Positives = 188/450 (41%), Gaps = 68/450 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ + GGGF G A+ L L D V+++ + F F PML ++S +VDA +A
Sbjct: 21 RVLVAGGGFAGYSAAMELCRLTRGRDDV-GVMVLSRENYFTFWPMLPGVISNDVDARNLA 79
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L G F + +++ + P V+ G+ + YD LVL+LG
Sbjct: 80 QPLRRALIRAGASFRRAQLEGVDPER--------------GVVRADGVEIPYDHLVLALG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGK----DSLIRVAVVGCGYS 255
EP +PG E + DA ++ +R + E + DS + V+G G +
Sbjct: 126 GEPAYFGIPGVEEHCISLRGIADAEKIRNRVIERYEEATLARGEVPDSRLSFVVIGGGAT 185
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVE A + E +V E L R+V+L L I
Sbjct: 186 GVETVAALHE------LVHGALAED--------------YPNLHPRRVRLTLVDRNPEIL 225
Query: 316 RVGEFEASVKQPESGAIPNI-------AADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ + NI A + D+ +LE + + ++ V+WT
Sbjct: 226 KELDPALRRVARRRLERLNIRILNGATAREVLKDRVVLE--------DGREIPSENVIWT 277
Query: 369 VGSKPLLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
G++ + +L +LP + R E D + V+G ++ +GD +A D+ G P
Sbjct: 278 AGARA--------SRKLEELPFPHHDRRGLEVDAGMRVRGFANVWGVGDCAANVDAEGNP 329
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
+P AQ A Q+ N+ AAI+ PFR++ LG+++ LG A + V GV
Sbjct: 330 VPPNAQAAVQEGRAVARNVLAAIDGGRPEPFRYRPLGQLVELGSRFAV---NEVLGVRFS 386
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G + +L YL +L + ++R +V WL
Sbjct: 387 GLLASLFWRLTYLYKLESPQNRARVAADWL 416
>gi|257069847|ref|YP_003156102.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium faecium
DSM 4810]
gi|256560665|gb|ACU86512.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium faecium
DSM 4810]
Length = 483
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 200/455 (43%), Gaps = 77/455 (16%)
Query: 80 PRICILGGGFGGLYT--ALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
P + ILGGGF G + ALR D + +V L+D++ F+P+LY++ + ++
Sbjct: 23 PHVVILGGGFAGAHAVGALR--------DARVRVTLIDRNVYKTFQPLLYQVATAGLNPG 74
Query: 138 EIAPRFADL-LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++ L L +++ + V+ + P + ++ G E G YD+L+
Sbjct: 75 DVTMFLRGLSLKVPNMRYRQGEVEGVDPERKV-----VSLDEGQKGRHEIG----YDYLI 125
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--RNFGKD-SLIRVAVVGC 252
++ GA PGA E A P T A + DR SELER R G+ + V +VG
Sbjct: 126 VANGATTTYFGTPGAEEHAMPMYTRSQALAIRDRIFSELERSSREAGQSHDKLHVCIVGG 185
Query: 253 GYSGVELAATVSE-RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVE+A +++ R++E I + P PG L +
Sbjct: 186 GPTGVEIAGALADFRMQELDI---------LYPEMDPGT--------------LQVTVLQ 222
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGL--------ESQIFEA 362
R + EF +Q AAD+ D+ + L+L +K + + I E+
Sbjct: 223 RGDELLKEFSTKYRQ--------YAADELRDRGVTLQLGRGVKEVGYDHVVLDDGSILES 274
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
D+ +W G P + P + RG+ D+ L VKG P ++A GD + +
Sbjct: 275 DITIWAAGV------AIPKSVSEWGFPQDKRGRLAVDDYLQVKGFPGVYAAGDIAGQDE- 327
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
PLP AQ A Q + A N+ A + +P F + NLG M +GR+ A + G
Sbjct: 328 ---PLPQLAQPAIQTGEAAARNIAAEVAGKPRKTFAYTNLGTMATIGRHAAIAEIPVLGG 384
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
L G +G +A +++++ ++ V ++ L+
Sbjct: 385 --LSGSVGWAAWLGVHIMKMIGHRNQRAVAMNLLS 417
>gi|452973192|gb|EME73014.1| NADH dehydrogenase YumB [Bacillus sonorensis L12]
Length = 403
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 178/411 (43%), Gaps = 70/411 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 3 KPKVVVLGAGYGGLMTVTRLGKKIGVNE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + ++ V+LE+G + YD+LV++
Sbjct: 61 CRYQIKDVINQSRVRFVQDTVKKINKEEN-------------KVVLETGEL-SYDYLVVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E AFP S + + R R+ E + + ++ R + V G G
Sbjct: 107 LGAVPETFGISGLKEHAFPISNI-NTSRQLREHIEYQFATYNTEAEKRPERLTIVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E + R+ E + V I VE ++ P P + A+ L + V
Sbjct: 166 FTGIEFLGELGNRIPELCREYDIDREKVNLICVEAAPSVLPGFDPELVDYAVNYLEGKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
Q +G +VK+ I + D +++ +A
Sbjct: 226 QFKIG-------------TAVKECTPDGII-VGKDDQTEE----------------IKAG 255
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + P +E N RG+ + L V+GH IF +GD S + +
Sbjct: 256 TVVWAAGVRG-NPVIEESGFE------NMRGRVKVKPDLRVEGHDNIFVIGDCSLVINEE 308
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ++ QQ + N+ A I+ + F F N G + LG +DA
Sbjct: 309 TDRPYPPTAQISMQQGETCAKNIAALIHGKETETFTFDNKGSVASLGEHDA 359
>gi|384214792|ref|YP_005605956.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 6]
gi|354953689|dbj|BAL06368.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 6]
Length = 420
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 184/452 (40%), Gaps = 57/452 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------APVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ +DR ++ + GV+ C VL++ G V YD LVL+
Sbjct: 61 WPVRHLM--------RDRREVTTLFATVSGVDADRRC-----VLIDDGSEVPYDTLVLAT 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVA-----VVGCG 253
GA +FA TLEDA + R L ER D R A +VG G
Sbjct: 108 GARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPAKRAARLTFVIVGAG 167
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+GVELA T++E N++T AR V + G
Sbjct: 168 PTGVELAGTIAEMAHHTLPADFRNIDTH-----------------KARVVLIEAGP---- 206
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
R + F + ++ I + + + E+ ++ EA +W G +
Sbjct: 207 -RVLAGFPDDLSAYAQASLEKIGVEVVLGQVVTEINREGVVFGGKLLEAKTRIWAAGVRA 265
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P P + G+ E ++ L + GHP IFA+GD+ + G+P+P A
Sbjct: 266 ------SPAAEWLGAPSDRAGRVEVEDDLTIPGHPEIFAIGDTVLINAWEGKPVPGIAPA 319
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A QQ + A + FR+++ G + +G+ A + V+ L G I
Sbjct: 320 AKQQGRHVAETIKARLRGENKGAFRYKHSGSLAQIGKRLAVIDFGKVK---LRGTIAWWI 376
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+A++ L HRL V +SWL A D A
Sbjct: 377 WGIAHIYFLIGLRHRLSVALSWLWIYARDQRA 408
>gi|254432553|ref|ZP_05046256.1| NADH dehydrogenase [Cyanobium sp. PCC 7001]
gi|197627006|gb|EDY39565.1| NADH dehydrogenase [Cyanobium sp. PCC 7001]
Length = 475
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 134/465 (28%), Positives = 195/465 (41%), Gaps = 76/465 (16%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D PR+ I+GGGF GL A RL ++ +V L+D+ +F+P+LY++ +G V
Sbjct: 18 DPAWPRVVIVGGGFAGLQAARRLM------NQPVRVSLIDKRNFNLFQPLLYQVATGLVP 71
Query: 136 AWEIAPRFADLLANTG-VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
++A LLA VQ V+ L P+ G ++ +G + YD
Sbjct: 72 EADVATPLRRLLAKAANVQVLLGEVEDLDPA--------------GRAVVFNGRRLAYDH 117
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKD-----SLIRVA 248
L+L+ G+ A P LE A + R+ L+ LE D L V
Sbjct: 118 LILAAGSGSSYFGHERWRPLAPPMKILEHADEIRRRVLTALEEAEQCADPERRRRLQSVL 177
Query: 249 VVGCGYSGVELAATVSERLE---EKGIVQAINVETTICPTGTPGNR----------EAAL 295
VVG G SG ELA ++ E L E+ Q + E PG R EAA
Sbjct: 178 VVGGGPSGCELAGSLHELLAHTVERDFRQ-LRPEHNRVILVDPGERLLRAMHPTLSEAAE 236
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+ L R V++VLG V I + P++GA P S++ I
Sbjct: 237 RSLRGRGVEVVLGGRVVAIE-ADAVTLTQPGPQAGAPP-------SERRI---------- 278
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP---LNARGQAETDETLCVKGHPRIFA 412
EA V WT G + H+ RL DL L+ G+ V HP I
Sbjct: 279 -----EAATVCWTAGVRA--SHL---GRRLADLTGCGLDRGGRVIVQPDFSVPDHPEIRV 328
Query: 413 LGDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
+GD A + RPLP A A Q + +L A + R + PFR+ +LG M ++G
Sbjct: 329 VGDLCAYSHTPDTRPLPGMAGPAVQMGGWVALDLLATLQGRRMAPFRWTDLGSMAVIGPL 388
Query: 472 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
A + G+ + G +G LA+L +P E+RL + WL
Sbjct: 389 SAVAD---LRGLRVSGVLGWLLWGLAHLAFMPAAENRLTLLTRWL 430
>gi|172058320|ref|YP_001814780.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Exiguobacterium sibiricum 255-15]
gi|171990841|gb|ACB61763.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Exiguobacterium sibiricum 255-15]
Length = 403
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 181/414 (43%), Gaps = 75/414 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ILG G+GGL TA+ L+ + D + + L+++ + L+E +G + A +
Sbjct: 4 PNIVILGAGYGGLITAVNLQKKLGVD--QANITLINKHDYHYQTTWLHEPAAGTMSAEQA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
D++ + V+ K V+ + + + TV L G V YD++V++L
Sbjct: 62 RIYINDVINPSRVKLVKGIVEKVDTASN-------------TVKLVDGGTVPYDYVVVAL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCGYS 255
G P+ + G E A S+L ++ D +E + SL+ + V G G++
Sbjct: 109 GGVPETFGIKGLKENALTISSLNSVRKIKEHIDYSFAEYKTTGSTNRSLLTIVVGGAGFT 168
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G+E + R+ E + +V+ +N+E PT PG +A L +
Sbjct: 169 GIEFMGELVNRIPELCKQYDIPRELVRVVNIEA--APTVLPG-FDADL-----------V 214
Query: 308 GYFVRCIRRVG-EFE--ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
Y + + R G EF+ +K+ G++ P ++G ++ EA+
Sbjct: 215 NYAHKWLERQGIEFKLGNGIKECGPGSV--------------TFGP-LQGDTTETIEANT 259
Query: 365 VLWT--VGSKPLLP--HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
++WT V P++ E NR+ E L V GH +F +GD SA+
Sbjct: 260 IIWTGGVSGNPVVAASGFEAMRNRV-----------VVQEDLRVPGHENVFMIGDCSAVM 308
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
D +S RP P TAQ+A QQA N+ A I R F ++N G + LG D
Sbjct: 309 DPASNRPYPPTAQIATQQAHKVAENIAALIGGRQTSTFTYENKGTVASLGHKDG 362
>gi|407477989|ref|YP_006791866.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Exiguobacterium antarcticum B7]
gi|407062068|gb|AFS71258.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Exiguobacterium antarcticum B7]
Length = 403
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 180/414 (43%), Gaps = 75/414 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ILG G+GGL TA+ L+ + D + + L+++ + L+E +G + A +
Sbjct: 4 PNIVILGAGYGGLITAVNLQKKLGVD--QANITLINKHDYHYQTTWLHEPAAGTMSAEQA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
D++ + V+ K V+ + T TV L G V YD++V++L
Sbjct: 62 RIYINDVINPSRVKLVKGIVEKVD-------------TASNTVKLVDGGTVPYDYVVVAL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCGYS 255
G P+ + G E A S+L ++ D +E + SL+ + V G G++
Sbjct: 109 GGVPETFGIKGLKENALTISSLNSVRKIKEHIDYSFAEYKTTGSTNRSLLTIVVGGAGFT 168
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G+E + R+ E + +V+ +N+E PT PG +A L +
Sbjct: 169 GIEFMGELVNRIPELCKQYDIPRELVRVVNIEA--APTVLPG-FDADL-----------V 214
Query: 308 GYFVRCIRRVG-EFE--ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
Y + + R G EF+ +K+ G++ P ++G ++ EA+
Sbjct: 215 NYAHKWLERQGIEFKLGNGIKECAPGSV--------------TFGP-LQGESTETIEANT 259
Query: 365 VLWT--VGSKPLLPH--VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
++WT V P++ E NR+ E L V GH +F +GD SA+
Sbjct: 260 IIWTGGVSGNPVVAASGFEAMRNRV-----------VVAEDLRVPGHENVFMIGDCSAVM 308
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
D +S RP P TAQ+A QQA N+ A I R F ++N G + LG D
Sbjct: 309 DPNSNRPYPPTAQIATQQAHKVAENISALIGGRQTSTFTYENKGTVASLGHKDG 362
>gi|320450839|ref|YP_004202935.1| NADH dehydrogenase [Thermus scotoductus SA-01]
gi|320151008|gb|ADW22386.1| NADH dehydrogenase [Thermus scotoductus SA-01]
Length = 395
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 158/363 (43%), Gaps = 55/363 (15%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LL+D +F+P+LY++ +G ++ +A LL +F RV+
Sbjct: 32 LLLDARNHHLFQPLLYQVATGFLEGPAVAYPLRALLRRG--RFLLGRVE----------- 78
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231
G + LE G + Y +LV++ G+ P VPG E A TL A RV +L
Sbjct: 79 --RVDLEGKRLFLEGGDALPYRFLVVATGSLPSDLGVPGVREHALFLKTLGQALRVRYRL 136
Query: 232 SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR 291
E + + + + VVG G +GVELA +SE L A+ + P G
Sbjct: 137 LEALEKAARRGRPLDLLVVGGGPTGVELAGALSEFLR-----YALPRDFPEVPAGAVTLL 191
Query: 292 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 351
EA ++L A F ++ + GA+ + + E+
Sbjct: 192 EAGPRLLPA-------------------FRPALGRYAEGALAQLGVRVRLGAQVAEVGEG 232
Query: 352 IKGLE-SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 410
L + + DLVLW VG + N L LP +ARG+ TD L + G+P +
Sbjct: 233 WVRLSGGERLKGDLVLWAVGVR---------GNPLPGLPADARGRVPTDPCLRLVGYPEV 283
Query: 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
+ +GD + L P A VA QQ +A NL A+ ++ LPFR+++ G++ ++GR
Sbjct: 284 YVVGDLNGL------GFPQLAPVALQQGRWAARNLLRALREQDPLPFRYRDRGQLAVIGR 337
Query: 471 NDA 473
N A
Sbjct: 338 NRA 340
>gi|328950100|ref|YP_004367435.1| NADH dehydrogenase (ubiquinone) [Marinithermus hydrothermalis DSM
14884]
gi|328450424|gb|AEB11325.1| NADH dehydrogenase (ubiquinone) [Marinithermus hydrothermalis DSM
14884]
Length = 430
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 173/414 (41%), Gaps = 79/414 (19%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ++G GFGGL L D +V LVDQS VF P+LY++ + ++A +IA
Sbjct: 4 HIVVVGAGFGGLNAVRELSK-----DPTVRVTLVDQSNSHVFLPLLYQVAAAGLEATQIA 58
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE-----YDW 194
P A L +F R + G L E L VE YD+
Sbjct: 59 FPIRAYLRRFPRARFHLGRAE-------------------GVDLKEKTLWVEGQPIPYDY 99
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVA 248
LV++ G++ +PG AE AF TL++A + DR LS E D +L+
Sbjct: 100 LVVAAGSKSNDFGIPGVAEHAFGLKTLKEAKEIRDRILSACEEAVHTPDPERKRALLTWV 159
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
+VG G +GVELA + E + + P +++L VL
Sbjct: 160 IVGGGPTGVELAGALGE------------LRNHVIRRDYPELDPREIRILLIEAGPRVLA 207
Query: 309 YFVRCIRRVGEFEASVKQPESGA-----IPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ P S A + + + + + E+ P+ L++ F
Sbjct: 208 HL---------------SPASSAYAQRFLERLGIEVMTRAMVAEVTPSGVKLKNGAFIPS 252
Query: 364 L-VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD- 421
+W+ G L LP G+ T L ++G P ++ +GD + L +
Sbjct: 253 FTTVWSAGVA---------GAALPGLPAERNGRVPTTPELHLEGDPHVYVVGDVNLLINP 303
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+GRP P AQVA QQ AG N+ + +PL PF++++ G M+ LGRN A +
Sbjct: 304 KTGRPYPQVAQVAIQQGTLAGRNIRRHLRGQPLRPFQYKDKGNMVTLGRNHAVL 357
>gi|383755134|ref|YP_005434037.1| putative NADH dehydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381367186|dbj|BAL84014.1| putative NADH dehydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 419
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 197/458 (43%), Gaps = 81/458 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPRI I+G GFGG ++L L +++ + LVD+ +F+P+LY++ + +
Sbjct: 4 RKPRIVIVGAGFGG----VKLAKLFSKEN--VDITLVDRHNYHLFQPLLYQVSTAVLSTD 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIA P N V+FF + LGV+ +LL + +EYD+L+
Sbjct: 58 EIAYPIRTFFRKNKNVEFFMAKA--------LGVDQQR------NILLTNHGEIEYDYLI 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVV 250
L+ GA + + +F +L++A + + L ER N KD ++ +V
Sbjct: 104 LAAGATTNFFGMTEVEQHSFGMKSLQEALHIRNHVLHMFERANKSKDPEERRKMLSFVIV 163
Query: 251 GCGYSGVELAATVSER--LEEKGI---------VQAINVETTICPTGTPGNREAALKVLS 299
G G +G+E A +SE +++K V+ I + P R+ ++VL
Sbjct: 164 GGGPTGIEEAGAISELIGIQKKEFHNLDFSEVTVKLIEATPNVLPMMPQNLRDHTVEVLR 223
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESG-AIPNIAADKNSDKYILELQPAIKGLESQ 358
++ V+++L +V ++ V + ++G IP
Sbjct: 224 SKGVEVLLN------TQVTGYDGHVIKLKNGEEIP------------------------- 252
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
++W G K +P +E ++ G+ DE L V G +FA+GD +
Sbjct: 253 ---TSTLIWAAGVKA-VPFIENCGGE-----VDRAGRVIVDEKLRVNGSQNVFAIGDCAN 303
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSP 477
+ RPL A VA Q+A A N+ I + L F +++LG M +GR A V+
Sbjct: 304 FCHGTERPLATVAPVATQEAVVAHENIMRLIRGQQELKTFVYKDLGAMATIGRGQAVVAK 363
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ + + G I A +LIRL + V + W
Sbjct: 364 TSMNP-EMTGFIAWCAWMFIHLIRLAGTHTNITVAIKW 400
>gi|194335855|ref|YP_002017649.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pelodictyon phaeoclathratiforme BU-1]
gi|194308332|gb|ACF43032.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Pelodictyon phaeoclathratiforme BU-1]
Length = 434
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 106/445 (23%), Positives = 178/445 (40%), Gaps = 58/445 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF GL TA V + + ++ L+D+ +F+P+LY++ + +
Sbjct: 2 KKRVVIIGGGFAGLNTAR-----VLGNKEDIEITLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LAN V FK V +H+ + T + YD+LVL
Sbjct: 57 IAAPLRNMLANYRNVTVFKGIV------EHIDMENKTVVTDFHNI--------PYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------FGKDSLIRVAVVG 251
+ G + EFA TL A + R++ E R + L+ +VG
Sbjct: 103 ACGVQHHYFGHNEWEEFAPGLKTLAQAKEIRRRVMEAYERAERTTDFVERKKLLTFVIVG 162
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++ E +R K +L + V
Sbjct: 163 GGPTGVELAGSIGEM-----------------------SRYTLSKFYRNIDPKLTRIFIV 199
Query: 312 RCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
R+ G F + + ++ + ++ + E+ + ++ EA VLW G
Sbjct: 200 EAAPRILGSFSPDLASKATRSLEKLGVQVWTNSMVSEVDADGVQIGNERIEAATVLWAAG 259
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ + + + G+ E L + GHP IF GD + +G PLP
Sbjct: 260 VTAI-----EIGKTMEGVETDRIGRIVVSEDLSIPGHPEIFVGGDLAHFVSENGNPLPGL 314
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A VA QQ G N+ + + FR+++ G+M +G+N A V G+ DG
Sbjct: 315 APVALQQGRAIGKNILLDLKTKARKVFRYRDKGQMATIGKNKAIVEFG---GLKFDGIFA 371
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSW 515
L ++ L + HR+ V + W
Sbjct: 372 WFTWLLVHIYFLTSFRHRVFVLLQW 396
>gi|374320150|ref|YP_005073279.1| NADH dehydrogenase-like protein yjlD [Paenibacillus terrae HPL-003]
gi|357199159|gb|AET57056.1| NADH dehydrogenase-like protein yjlD [Paenibacillus terrae HPL-003]
Length = 396
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 172/412 (41%), Gaps = 78/412 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ADVTLVNRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ V K VK + P + ++LE G + +D+LV+ L
Sbjct: 63 RIPISQLIDEFKVDLIKGTVKEIIPKEK-------------KIVLEDGSL-SFDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNFGKDSLIRVAVVGCGYSG 256
G EP+ + G +FA ++ ++ R+ R+ E + +N G + V G G+SG
Sbjct: 109 GGEPETFGIQGMDKFALTIRSI-NSVRLIREHIEYQLALYKNDGNPGRLNFVVGGAGFSG 167
Query: 257 VELAATVSERLEEKG--------IVQAINVETTICPTGTPGNR----EAALKVLSARKVQ 304
+E A +++RL + +Q INVE PT PG E A+ VL + V
Sbjct: 168 IEFVAELADRLPQLARAYDIDFNRIQIINVEA--APTALPGFDPELVEYAMDVLKRKGVT 225
Query: 305 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+G ++ C+ E G I E + EA
Sbjct: 226 FRIGVPIKECL-------------EDGVIVG---------------------EGEKIEAC 251
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N + RG+ + D+ L H IF +GDSS + +
Sbjct: 252 TVVWTGGIR--------GNGLIEKAGFEVMRGRVKIDDFLRAPDHDDIFIIGDSSLMFNP 303
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
GRP P TAQ+A QQ NL A + + L F F N G + LG+ +A
Sbjct: 304 EGRPYPPTAQIAMQQGVLCAKNLAATLRKKELHKFVFSNKGTVASLGKGEAV 355
>gi|209517297|ref|ZP_03266141.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia sp. H160]
gi|209502306|gb|EEA02318.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia sp. H160]
Length = 431
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 176/405 (43%), Gaps = 44/405 (10%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K RI I+GGG G+ A RL + + + V L+D+S ++KPML+ + +G D
Sbjct: 2 KDPTRIVIVGGGIAGILLATRLGDRLGRAGEA-SVTLIDRSPTHIWKPMLHTIAAGTRD- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC--THGGTVLLESGLIVEYDW 194
+ + L++ F + +C D +A H G ++LE V YD
Sbjct: 60 --VNQQRVIYLSHAREHSFTYQPGEMCGLDRQRREVQLAAIEAHEGGLMLEP-RTVPYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
LVLS+G+ VPG E + + A + L E R+ KD +RVA+VG G
Sbjct: 117 LVLSIGSRANDFGVPGVMEHCHLIDSQQQAETFNVALREHSLRSVVKDEELRVAIVGAGA 176
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVEL+A +S E G P RE +L L
Sbjct: 177 TGVELSAELSHLFE------------LAASYGDPAIRE-----------RLRLTLLEAGP 213
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKP 373
R + F + + I + + ++P + + ++ +ADL++W G
Sbjct: 214 RVLPAFPPEISSESQQRLEKIGLRVMTSTGVSAVEPGGFRYGDGKLVDADLMVWAAG--- 270
Query: 374 LLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPAT 430
V+ P+ NRL L N Q TL IFALGD ++L + + R LP T
Sbjct: 271 ----VKAPDFMNRLAGLETNRSNQIVVSVTLQALNEENIFALGDCASLTPEGAQRALPPT 326
Query: 431 AQVAFQQADFAGWNL--WAAINDRPLLPFRFQNLGEMMILGRNDA 473
AQVA QQA+ +L W + +PL F F++ G ++ L + D+
Sbjct: 327 AQVAAQQAEHLARHLPEWVR-HSKPLPRFAFRDFGSLVSLSKYDS 370
>gi|398826678|ref|ZP_10584915.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
YR681]
gi|398220623|gb|EJN07066.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
YR681]
Length = 421
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 115/451 (25%), Positives = 185/451 (41%), Gaps = 55/451 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------APVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L+ + + V L + V+G A VL++ G V YD LVL+ G
Sbjct: 61 WPVRHLMRD------RREVTTLFAT----VSGVDATRR--RVLIDDGSEVPYDTLVLATG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVA-----VVGCGY 254
A +FA TLEDA + R L ER D + R A +VG G
Sbjct: 109 ARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPVKRAARLTFVIVGAGP 168
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELA T++E N++T AR V + G
Sbjct: 169 TGVELAGTIAEMAHHTLPADFRNIDTH-----------------KARVVLIEAGP----- 206
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
R + F + ++ I + + + E+ ++ EA +W G +
Sbjct: 207 RVLAGFPDDLSAYAQASLEKIGVEVVLGQAVTEINREGVVFGGKLLEAKTRIWAAGVRA- 265
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
P P + G+ + ++ L + HP IFA+GD+ ++ G+P+P A A
Sbjct: 266 -----SPAAEWLGTPSDRAGRVQVEDDLTIADHPEIFAIGDTISINAWDGKPVPGIAPAA 320
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
QQ + A + PFR+++ G + +G+ A + ++ L G I
Sbjct: 321 KQQGRHVAETIKARLRGESKGPFRYKHSGSLAQIGKRLAVIDFGKIK---LRGTIAWWIW 377
Query: 495 KLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+A++ L HRL V +SWL A D A
Sbjct: 378 GIAHIYFLIGLRHRLSVALSWLWIYARDQRA 408
>gi|409356695|ref|ZP_11235082.1| NADH dehydrogenase, FAD-containing subunit [Dietzia alimentaria 72]
Length = 457
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 117/445 (26%), Positives = 186/445 (41%), Gaps = 59/445 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GF GLY A +L VLL+DQ+ F+P+LY+ + ++ +A
Sbjct: 22 VVIVGAGFAGLYAAQKLGR------AGVDVLLLDQNPYHQFQPLLYQAATSQIPISSVAR 75
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L +D VK+ V A T TV GL L ++ G
Sbjct: 76 PLRAILHRE-----RDHVKIRTAR----VADIDATTK--TVTTADGLSYRGRILAIAAGT 124
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDS-----LIRVAVVGCGYS 255
EP PGA + A+P +L+DA + L LER + +D+ VAVVG G +
Sbjct: 125 EPNFFNTPGARDLAYPLYSLDDATSLSSAMLGALERASAMQDAGGEHRPFGVAVVGAGPT 184
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVE A ++E N+ + +P A++ V VLG F +
Sbjct: 185 GVETAGALAE-----------NIRLVVAEQYSP-EFAASINVHLIDMSDTVLGAFSDSSQ 232
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
R + G I ++ ++ + + + A +V WT G K
Sbjct: 233 RYTRRSLQ----DLGVIIHLGTAVSA-----VTEEGVTLADDTTIPAGIVAWTAGLKA-- 281
Query: 376 PHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
LH LP G+ + + L V P ++ LGD++ + D+ GR LP V
Sbjct: 282 ------TGLLHKAGLPTGRGGRVDVNTDLTVPDFPGVYVLGDAANIVDAKGRSLPQLGSV 335
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA--VSPSFVEGVTLDGPIGH 491
A Q +A N+ A + +P PF F++LG M ++GR A V+P ++ + G +
Sbjct: 336 AKQSGQWAADNIQADLAGQPRTPFGFRDLGFMAMIGRGRAVAEVTPRRIQ---MSGLLAF 392
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWL 516
+ +L+ L + R V VSW
Sbjct: 393 LSWLAVHLMLLSGMQQRAAVLVSWF 417
>gi|108760597|ref|YP_629699.1| NADH dehydrogenase [Myxococcus xanthus DK 1622]
gi|108464477|gb|ABF89662.1| putative NADH dehydrogenase [Myxococcus xanthus DK 1622]
Length = 461
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 170/401 (42%), Gaps = 56/401 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ILGGGF GLY A L + P +V +VD+ +F+P+LY++ + + E
Sbjct: 11 PHVVILGGGFAGLYAARHLY-------RAPVRVTMVDRQNHHLFQPLLYQVATATLSPSE 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L + V V GV+ T G VLL G + YD+LV++
Sbjct: 64 IAAPLRAVLGHHQVAVVLAEVT--------GVD-----TAGKRVLLSDGEL-NYDYLVIA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVVGC 252
GA A+FA ++EDA + R+ L+E E + SL+ ++G
Sbjct: 110 TGATHSYFGNDAWAQFAPGLKSIEDALAIRRRILVAFELAERETDPEIRRSLLNFVIIGA 169
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVELA +++E I G+ + R +++L +
Sbjct: 170 GPTGVELAGSLAE----------------ISRHSLHGD----FRNFDPRDARIILIEGMD 209
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ V + + Q + + + + + + + + A VLW G
Sbjct: 210 KVLPV--YPDDLSQKACRTLEKLGVEVRTGARVTNITEQGVFIGQEFIPARTVLWAAGV- 266
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P + + L+ G+ L + GH +F +GD S L+D+ G+P+P A
Sbjct: 267 -----AASPVAKSLGVELDRSGRVLVTPELTIPGHDDVFVVGDLSLLKDAEGKPVPGLAP 321
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
VA Q+ A N+ + +P++PF + + G ++GR A
Sbjct: 322 VAMQEGKHAAHNIRRQLQGKPMVPFSYWDRGSYAVIGRGHA 362
>gi|383452591|ref|YP_005366580.1| NADH dehydrogenase [Corallococcus coralloides DSM 2259]
gi|380735154|gb|AFE11156.1| NADH dehydrogenase [Corallococcus coralloides DSM 2259]
Length = 468
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 124/477 (25%), Positives = 214/477 (44%), Gaps = 82/477 (17%)
Query: 63 SEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122
++++S P +K R+ ILGGGF G+Y AL LE + + D +V LV + F+F
Sbjct: 3 ADNQSKGLCVGAPPPRK-RVLILGGGFAGMYAALHLERQLGKRDDV-EVTLVSRDNFFLF 60
Query: 123 KPMLYELLSGEVDAWEIAPRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPM 174
PML+E+ + +++A I L+ +G+ RV + H G++G
Sbjct: 61 TPMLHEVAASDLNATAIVISLRKLMPRLTFVEGDVSGLDLESKRVTVA----HGGLDG-- 114
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA-----CRVDR 229
H T +EYD++V+++G+E PG +++ TL DA C VDR
Sbjct: 115 ---HSHT--------LEYDYMVMAMGSETNFFGKPGPRDYSLTMKTLGDAMLLRNCLVDR 163
Query: 230 -KLSELERRNFG-KDSLIRVAVVGCGYSGVELAATVSERLEEK----GIVQAINVETTIC 283
+ ++ + G +++++ VVG G++GVE A +++ + +Q NV +
Sbjct: 164 LEEADADCITMGTRNAIVTFVVVGGGFAGVEAAGAINDFIHGALPFYPNIQHANVRVMLV 223
Query: 284 PTGTPGNREAALKVLS-ARKVQLVLGYFVRCIRRVGEF-EASVKQPESGAIPNIAADKNS 341
G E + + AR+ + G VR V + EA V+ P+ +P
Sbjct: 224 HGGKEVLPELGEDLGAYARQKLIEHGVEVRTGIHVKDVTEAGVELPDGTVVPT------- 276
Query: 342 DKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDE 400
V+WT G V PP + L LP RG+ + +
Sbjct: 277 ---------------------KTVVWTAG-------VTPP-SLLCTLPCEMERGRLKVNA 307
Query: 401 TLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
+ V G P ++ALGD +++ D + G+P P TAQ A +Q N+ AA+ +P FR
Sbjct: 308 RMEVPGFPGVWALGDCASVPDVTNGGKPCPPTAQHALRQGVTVAGNVSAALKGQPGKAFR 367
Query: 459 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
++ LG++ +G+ + G+ G + YL +LP E +++V + W
Sbjct: 368 YKMLGQLATIGQRSGVAR---ILGLKFSGTFAWVLWRTVYLFKLPKLETKVRVAMGW 421
>gi|386874786|ref|ZP_10117012.1| pyridine nucleotide-disulfide oxidoreductase [Candidatus
Nitrosopumilus salaria BD31]
gi|386807409|gb|EIJ66802.1| pyridine nucleotide-disulfide oxidoreductase [Candidatus
Nitrosopumilus salaria BD31]
Length = 451
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 118/456 (25%), Positives = 203/456 (44%), Gaps = 59/456 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KK +I ILGGGF G+ A +LES ++D+ + ++L+V + +F PML ++ SG ++
Sbjct: 3 KKKKIVILGGGFAGVECARQLESQ-FKDNPEIELLMVSEDNFLLFTPMLPQVASGMIETR 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I + T +F++ RVK + P L T GT S + + YD+LV+
Sbjct: 62 HIVLPIRTICKKT--KFYEGRVKNIDPYGKL-------VTLWGTGDKRS-ISIHYDFLVV 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVG 251
+LG+E + + A+ TL DA + +R + LE+ D ++R VVG
Sbjct: 112 ALGSETNFFGMSDVEKNAYTMKTLNDAVVLRNRVIDMLEQAENETDPILRKSFLNFVVVG 171
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G++G+E A + + L + P ++ L+V+ + ++L F
Sbjct: 172 GGFAGIETAGELMDLLLD-------------ARKHYPTIQKKDLRVIVLEALGMILPGFN 218
Query: 312 RCIRRVGEFEASVKQPESG-------AIPNIAADKNSDKYILELQPAIKGLESQIF---- 360
+++ +F A K E G A+ + ++ + K I P K F
Sbjct: 219 ---QKLADF-AKDKMVERGIDIRLKTAVTSFDGNEVTTKTI---DPTPKDPIDDSFVDSI 271
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
++WT G V P N + +G+ ++ L V P +FA+GD +
Sbjct: 272 RTKTLIWTAG-------VTPVNTIKRSMFKTDKGKLIINDFLEVPDFPGVFAIGDCALFL 324
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
D + RP P TAQ+A QA A NL A I + F + + G+M I+G+ +
Sbjct: 325 DPETQRPFPPTAQIAEAQAKVAAKNLTALIKNSEKEKFVYHSKGQMAIIGKRSGIAT--- 381
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G+ + G + YL ++ T + R +V + W
Sbjct: 382 FLGMNISGFWAWLIWRNVYLSKIATFDKRTRVFLDW 417
>gi|171322700|ref|ZP_02911453.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
gi|171091956|gb|EDT37415.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
Length = 433
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 177/394 (44%), Gaps = 31/394 (7%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + V ++D+S V+KPML+ + +G D +
Sbjct: 9 RIVIVGGGIAGLQLATRLGERLGRSGRA-LVTVIDRSPTHVWKPMLHTIAAGTRDVQQQQ 67
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + V + G +LL++ + EYD L+L+LG
Sbjct: 68 VIFLAHARDHGYTYQPGELKGLDRARRR-VQLREIRSPEGELLLDAREL-EYDVLILALG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
++ VPG E + + + A + L R+ +D RVA+VG G +GVELA
Sbjct: 126 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEPFRVAIVGAGATGVELA 185
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
A +S LE + QA + T+ E+ ++L+A ++ RR+ +
Sbjct: 186 AELSRLLE---VAQAYG-DATVRERLQLTLLESGPRILAAFPPRIS----ASAQRRLEQI 237
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380
V + +AD N Y + EADL++W G K
Sbjct: 238 GIHVLT----STRVTSADSNGFHYG----------DGSFAEADLMVWAAGVK-----ASD 278
Query: 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQAD 439
L L N Q TL +FA+GD ++L+ D RPLP TAQVA QQA+
Sbjct: 279 FMQALGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGRERPLPPTAQVATQQAE 338
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+L A ++ +PL PF F + G ++ + DA
Sbjct: 339 HLAKHLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|434393985|ref|YP_007128932.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
gi|428265826|gb|AFZ31772.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
Length = 435
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 110/417 (26%), Positives = 177/417 (42%), Gaps = 60/417 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
VLLVD++ F P+LY++ E+ +IA LL F L+ H+
Sbjct: 30 VLLVDRNNYHTFIPLLYQVAVAELQPEQIAYPVRSLLQRLAFANF-----LMAEVTHIDF 84
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-- 228
V++ GL + YD+L+LS G+E + +PGA ++A P TL++A +
Sbjct: 85 --------ANQVVITDGLTIPYDFLILSTGSESQFLGIPGADKYALPMKTLQEAVYLRNH 136
Query: 229 ---------RKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279
R++ +RR L+ A+VG G +GVELA + E ++ + + +E
Sbjct: 137 ILSCFEQAVREIDPAQRR-----LLLTFAIVGGGPTGVELAGALVELIQGRLVKDFPTLE 191
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
+ + L L R + Y + ++R+G + ++ S PN +
Sbjct: 192 MEQVQVILLQSSDRLLADLPLR----LSDYTYKQLQRIG-VKVYLQARVSKVTPNAVYLE 246
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 399
N + IF +V WT G + PP P A+GQ
Sbjct: 247 NG---------------AVIFSKTIV-WTAGVQ-----ASPPTPTAELFP-AAKGQVAVL 284
Query: 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
TL + HP+++ +GDS+ + + G PLP A VA QQ A N+ I + PFR+
Sbjct: 285 PTLQLPNHPQVYVVGDSAYV-EQDGEPLPLVAPVALQQGTLAAQNILRQIKGKEPKPFRY 343
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ G I+ RN A V+ + T G +L LP +RL V + WL
Sbjct: 344 VDKGRAAIIKRN-AGVAQT--GNFTFTGFPAWLLWLAIHLYYLPGGRNRLIVFLDWL 397
>gi|337747988|ref|YP_004642150.1| hypothetical protein KNP414_03741 [Paenibacillus mucilaginosus
KNP414]
gi|336299177|gb|AEI42280.1| YumB [Paenibacillus mucilaginosus KNP414]
Length = 387
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 168/406 (41%), Gaps = 77/406 (18%)
Query: 85 LGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFA 144
+G G+GG+ TA+RL+ + ++ V LV++ + L+ +G +
Sbjct: 1 MGAGYGGIVTAIRLQKELNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDNPENARVNIL 58
Query: 145 DLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204
L+ + F K V + P + V+LE G + YD+LV+ LG EP+
Sbjct: 59 KLIDEFKIDFVKSTVVQIRPQEK-------------KVILEEGTL-SYDYLVIGLGGEPE 104
Query: 205 LDVVPGAAEFAFPFSTLEDACRVDRKLSELE----RRNFGKDSLIRVAVVGCGYSGVELA 260
+PG E+A ++ ++ R R+ E + +R + + V G G++G+E
Sbjct: 105 TFGIPGLKEYALNIRSI-NSVRFIREHIEYQFARFKREPSRTDYLTFIVGGAGFTGIEFV 163
Query: 261 ATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKVQLVLG 308
+++R+ E +V+ NVE PT PG E A+ VL + V +
Sbjct: 164 GELADRIPELCKEFDVDPSLVKIYNVEA--APTALPGFDPELVEYAMNVLKNKGVTFKIA 221
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
++ G A+ ++ +S V+WT
Sbjct: 222 TAIKECTPEGVVLATGEEIKSAT---------------------------------VIWT 248
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
G + N+ L + RG+ + DETL GH ++ LGD S + GRP
Sbjct: 249 GGIRG--------NHMLDEAGFETMRGRIKVDETLRAPGHENVYVLGDCSIVMSPEGRPY 300
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQ++ QQAD NL A I L F ++ G + LGR +A
Sbjct: 301 PPTAQISMQQADVCAHNLVAQIRGSQLKSFEYKPKGTVASLGRGEA 346
>gi|423613086|ref|ZP_17588946.1| hypothetical protein IIM_03800 [Bacillus cereus VD107]
gi|401242648|gb|EJR49021.1| hypothetical protein IIM_03800 [Bacillus cereus VD107]
Length = 402
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/412 (24%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L++G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILQNGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D LI + V G G+
Sbjct: 106 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEEKFAQYATEKRDELITIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRIPELCKKYDIPREKARIICVEAAPTALPGFDPELVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G +S++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDSELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRIKVDEFMHAPGHEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|350267404|ref|YP_004878711.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349600291|gb|AEP88079.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 404
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKTDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYHTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E +G+V+ I VE T+ P P + A+ L V
Sbjct: 166 FTGIEFLGELAARVPELCKEYDVDRGLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 225
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 226 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 256 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 309 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 360
>gi|354584842|ref|ZP_09003734.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus lactis 154]
gi|353191393|gb|EHB56900.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus lactis 154]
Length = 397
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 183/408 (44%), Gaps = 71/408 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYITTHLHMPAAG------- 55
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D + NT V K D K+ D + + H V+LE G + YD+LV+
Sbjct: 56 ----TDSIENTRVSISKLIDEFKI----DLVKSSVQEIRLHDKKVILEDGTL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-------LSELERRNFGKDSLIRVAVV 250
LG EP+ +PG AE A ++ ++ R+ R+ L + ERR I V
Sbjct: 107 GLGGEPETFGIPGLAEHAMTIRSI-NSVRLIREHIEYQFALYKNERR---PQERINFVVG 162
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G+SG+E A +++R+ + + + +V+ + N EAA L +LV Y
Sbjct: 163 GAGFSGIEFVAELADRIPK--LCKEYDVDPALVNIY---NVEAAPSALPGFAPELV-DYA 216
Query: 311 VRCIRRVG---EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
+R + + G +F ++K+ GA+ +L I+ + V+W
Sbjct: 217 IRVLEKKGVTFKFGVAIKECLPGAV------------LLNNGEEIR--------SQTVVW 256
Query: 368 TVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
T G + NRL + RG+ + DE L G+ I+ +GD+S + + GR
Sbjct: 257 TGGIR---------GNRLVEAAGFETMRGRVKVDEYLRAPGYENIYIIGDNSLIFNDEGR 307
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P P TAQ+A QQ N+ A+I + + F F N G + LG+ +
Sbjct: 308 PYPPTAQIAMQQGVCCAQNIVASIRGKAMRKFEFHNKGTVASLGKGEG 355
>gi|311031743|ref|ZP_07709833.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bacillus sp. m3-13]
Length = 405
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 178/417 (42%), Gaps = 78/417 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I ILG G+GGL TA+RL+ ++ ++ + LV++++ L+E +G + A
Sbjct: 2 KKPSIVILGAGYGGLVTAVRLQKMIGVNE--ADITLVNKNDYHYESTWLHEASAGTLPAD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ + + F D V G+N TV L G + YD+LV+
Sbjct: 60 RTRYKISDVIDRSKIHFLHDTVT--------GIN-----REAKTVALTKGGEIAYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG--------KDSLIRVAV 249
LG E + + G E AF + L V RK+ E F +D + + V
Sbjct: 107 GLGYEAETFGIKGLKEHAFTIANL----NVARKIREHIEYQFATYNTEAHRRDDRLTIVV 162
Query: 250 VGCGYSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLS 299
G G++G+E + R+ E K V+ + VE T+ P P E A+ L
Sbjct: 163 GGAGFTGIEFLGELVNRVPELCQEFDIPKEKVRIVCVEAAPTVLPGFDPELVEYAVNTLE 222
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
+ V+ +G ++ EA+ E G I +A D+ E +
Sbjct: 223 RKGVEFKIGTAIK--------EAT----EEGII--VAKDE----------------EVEE 252
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSS- 417
+A V+W G + N+ + D N RG+ + D L GH +F +GD S
Sbjct: 253 IKAGTVVWAAGVR--------GNHLVEDSGFENMRGRVKVDPYLRAPGHEDVFIVGDCSL 304
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + RP P TAQ+A QQ + NL + + L F G + LG +DA
Sbjct: 305 IINEEINRPYPPTAQIAMQQGEVCAKNLAVLVRGQGELQTFTPDLKGTVCSLGEDDA 361
>gi|377575419|ref|ZP_09804413.1| putative NADH dehydrogenase [Mobilicoccus pelagius NBRC 104925]
gi|377535996|dbj|GAB49578.1| putative NADH dehydrogenase [Mobilicoccus pelagius NBRC 104925]
Length = 431
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 177/411 (43%), Gaps = 54/411 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GF G + L ++ V LVD+ F+P+LY++ +G ++ +IA
Sbjct: 4 RVVIVGAGFAGQHAYHELAEAGYE------VTLVDRHPYTTFQPLLYQVATGGLNPGDIA 57
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++ + K R K + V G T VL G + YD LVL+ G
Sbjct: 58 FPLRRFVSRS-----KGRTKFRRAT----VTG--IDTENKRVLTNRGEPIPYDTLVLAQG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR--VAVVGCGYSGV 257
A P +PGA E A + +A V D S LE+ D R V VVG G +GV
Sbjct: 107 AGPNFFGIPGAKENARTIYSRAEALAVRDLLFSGLEQMTTQPDRERRFTVLVVGGGATGV 166
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
E+A T++E E AI V + P LS ++VL + V
Sbjct: 167 EMAGTLAEMKSE-----AIPV---VYPE------------LSQDSFRVVLAEMADTL--V 204
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLP 376
F+ +++ + D + E++P ++ + + DLV+W G
Sbjct: 205 APFDPRLQRYTLHQLRKRGVDIRLGTAVKEVRPDSVDFADGSTMDVDLVIWASG---FGA 261
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
H P +P G+ E + L VKGHP I+A+GD++ G PLP AQ A Q
Sbjct: 262 H---PEVSEWGMPQGRGGRIEVEPNLQVKGHPDIYAIGDAAI---EPGSPLPQLAQPAMQ 315
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
G + AA P PF + + G M +GRN AAV+ F G T+ G
Sbjct: 316 MGSHVGREIVAADKGLPPTPFGYDDKGTMATIGRN-AAVA-QFPSGRTVTG 364
>gi|414083015|ref|YP_006991721.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Carnobacterium maltaromaticum LMA28]
gi|412996597|emb|CCO10406.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Carnobacterium maltaromaticum LMA28]
Length = 404
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 174/413 (42%), Gaps = 77/413 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ILG G+GGL R + + ++ LV+++E L+E+ SG
Sbjct: 6 KMKIVILGAGYGGL----RALKGLQKKHLNAEITLVNKNEYHYEATYLHEVASGANPPER 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I+ D++ F +D V + D TV L+ ++ YD+L+ +
Sbjct: 62 ISFAIKDVVDTKQTTFIQDTVIKVNKDDK-------------TVELDKTGLISYDYLIFA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK------DSLIRVAVVGC 252
LG E + + G E+A P + A + + R F + D+L+ + V G
Sbjct: 109 LGFESESFGITGVDEYALPMVDINTAVAIKEHM----HRQFAQYEATKDDALLSIVVCGA 164
Query: 253 GYSGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
G++ +E +++++ +K + I T+ P ++ L R
Sbjct: 165 GFTSIEYLGELTQQMPKLIKQYNLPADKIQLTCIEAMPTLLPMFVEKLSTYGIQKLKDRG 224
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+ ++G ++ + +D I E + E + +A
Sbjct: 225 VKFLVGTPIKEV-------------------------TADTVIYE-----ENEERKSIKA 254
Query: 363 DLVLWTVGSK-PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
++WT G K + R RG+ + L G+P +F +GD SA+ +
Sbjct: 255 KTIVWTTGVKGSSVVGGSGFEER--------RGRVMVEADLTAPGYPEVFIIGDCSAVMN 306
Query: 422 -SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A +QAD A NL A +N++P++PF F++ G + +G N+A
Sbjct: 307 PENNRPYPTTAQIALKQADAAVANLVAKVNNQPIVPFTFKSQGSVCSIGNNEA 359
>gi|78187436|ref|YP_375479.1| NADH dehydrogenase [Chlorobium luteolum DSM 273]
gi|78167338|gb|ABB24436.1| NADH dehydrogenase [Chlorobium luteolum DSM 273]
Length = 429
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 187/448 (41%), Gaps = 65/448 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF G+ A V + +V L+D+ +F+P+LY++ +D +
Sbjct: 2 KKRVVIVGGGFTGMNAAR-----VLGNRADVEVTLIDRRNYHLFQPLLYQVAMSALDEGD 56
Query: 139 IAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++L+ + +K V+ + +H T+ + G VEYD+L+L
Sbjct: 57 IAAPLRNMLSIYNNITVYKGIVERVDTENH-------------TIHTDFGP-VEYDYLIL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRN--FGKDSLIRVAVVG 251
+ G E A TL A + R++ E ER N + L+ +VG
Sbjct: 103 ACGVRHHYFGNNQWEENAPGLKTLSQAKEIRRRVLEAYEAAERSNDPVERKKLLTFVIVG 162
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++ E +R K+ +L + V
Sbjct: 163 GGPTGVELAGSIGEM-----------------------SRYTLSKLYHQIDPKLTRIFIV 199
Query: 312 RCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
R+ G F + + ++ + + + ++ + ++ EA VLW G
Sbjct: 200 EAAPRILGSFSPELASKATRSLEQLGVQVWTSSMVNDVDENGVQIGNERIEAATVLWAAG 259
Query: 371 SKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
+ R+ D + G+ + L V GHP IF GD + L +S G+PL
Sbjct: 260 VTAI---------RIGDNFGAETDRIGRIVVEGDLSVPGHPEIFVGGDQACLFNSEGKPL 310
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
P A VA Q+ +F G + + + PF++++ G+M +GRN A V + + DG
Sbjct: 311 PGMAPVALQEGNFIGKTIIRDLKGKVRKPFQYKDKGQMATIGRNRAIVE---IGNIKFDG 367
Query: 488 PIGHSARKLAYLIRLPTDEHRLKVGVSW 515
L ++ L + +HR+ V + W
Sbjct: 368 TPAWFTWLLVHIYYLTSFKHRVFVLMQW 395
>gi|296269493|ref|YP_003652125.1| NADH dehydrogenase [Thermobispora bispora DSM 43833]
gi|296092280|gb|ADG88232.1| NADH dehydrogenase [Thermobispora bispora DSM 43833]
Length = 446
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 121/457 (26%), Positives = 189/457 (41%), Gaps = 78/457 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLV--WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
PRI I+GGG+ G+YTALRL+ + W+ QV + D ++P L E +G ++
Sbjct: 4 PRILIVGGGYVGMYTALRLQRRLRPWE----AQVTVADLDSYMTYQPFLPEAAAGNIEPR 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +L + RV + +D + P H G + +EYD+LV
Sbjct: 60 HVVVPLRQVLPR--CRILSGRVTSVRLADRVAEFSP----HDG-----ADFTIEYDYLVF 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVG 251
+ G+ +L +PG AE+ F T+E+A + + L +L+ D +R VG
Sbjct: 109 APGSISRLLPIPGLAEWGIGFKTVEEAIHLRNHVLGQLDLAASTPDEAVRRRALTFVFVG 168
Query: 252 CGYSGVELAATVSERLEE-----KGI----VQAINVETT--ICPTGTPGNREAALKVLSA 300
GY+GVE A + + + KGI ++ + VE T I P P ++ L A
Sbjct: 169 GGYAGVEALAELEDMASDACKYFKGIRNSDMRWVLVEATDRILPEVGPDMGRWTVRQLRA 228
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R + + L + E+G +I D + F
Sbjct: 229 RGIDVRL-------------RTRLVSAENG---HIVLDDGDE-----------------F 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+AD ++WT G KP P DLPL+ RG+ D L + G F GD +A+
Sbjct: 256 DADTLVWTAGVKP------NPLVYEGDLPLDDRGRVRADAFLRIVGTRFAFTAGDVAAVP 309
Query: 421 DSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
D + G P AQ A +Q NL A I L P+R + LG + LG
Sbjct: 310 DLTRPGDYCPPNAQHAVRQGKRLADNLIATIRGEELKPYRHRQLGSVATLGLYRGVAQ-- 367
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V G + G + +L R+PT + ++ W
Sbjct: 368 -VYGKEVRGFPAWFLHRTYHLARMPTLNKKSRILADW 403
>gi|384176806|ref|YP_005558191.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349596030|gb|AEP92217.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 404
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA VSE +E + +V+ I VE T+ P P + A+ L V
Sbjct: 166 FTGIEFLGELAARVSELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 225
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 226 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 256 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 309 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 360
>gi|392529866|ref|ZP_10277003.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Carnobacterium maltaromaticum ATCC 35586]
Length = 401
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 174/413 (42%), Gaps = 77/413 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ILG G+GGL R + + ++ LV+++E L+E+ SG
Sbjct: 3 KMKIVILGAGYGGL----RALKGLQKKHLNAEITLVNKNEYHYEATYLHEVASGANPPER 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I+ D++ F +D V + D TV L+ ++ YD+L+ +
Sbjct: 59 ISFAVKDVVDTKQTTFIQDTVIKVNKDDK-------------TVELDKTGLISYDYLIFA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK------DSLIRVAVVGC 252
LG E + + G E+A P + A + + R F + D+L+ + V G
Sbjct: 106 LGFESESFGITGVDEYALPMVDINTAVAIKEHM----HRQFAQYEATKDDALLSIVVCGA 161
Query: 253 GYSGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
G++ +E +++++ +K + I T+ P ++ L R
Sbjct: 162 GFTSIEYLGELTQQMPKLIKQYNLPADKIQLTCIEAMPTLLPMFVEKLSTYGIQKLKDRG 221
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+ ++G ++ + +D I E + E + +A
Sbjct: 222 VKFLVGTPIKEV-------------------------TADTVIYE-----ENEERKSIKA 251
Query: 363 DLVLWTVGSK-PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
++WT G K + R RG+ + L G+P +F +GD SA+ +
Sbjct: 252 KTIVWTTGVKGSSVVGGSGFEER--------RGRVMVEADLTAPGYPEVFIIGDCSAVMN 303
Query: 422 -SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A +QAD A NL A +N++P++PF F++ G + +G N+A
Sbjct: 304 PENNRPYPTTAQIALKQADAAVANLVAKVNNQPIVPFTFKSQGSVCSIGNNEA 356
>gi|399053940|ref|ZP_10742670.1| NADH dehydrogenase, FAD-containing subunit [Brevibacillus sp.
CF112]
gi|433547141|ref|ZP_20503414.1| NADH dehydrogenase [Brevibacillus agri BAB-2500]
gi|398048222|gb|EJL40704.1| NADH dehydrogenase, FAD-containing subunit [Brevibacillus sp.
CF112]
gi|432181577|gb|ELK39205.1| NADH dehydrogenase [Brevibacillus agri BAB-2500]
Length = 396
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 164/385 (42%), Gaps = 54/385 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GGL T L+L+ + ++ ++ LV++ L+E +G A
Sbjct: 4 PKILILGAGYGGLLTTLQLQKKLNYNE--AEITLVNKHNYHYITTWLHEPAAGTASADHA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
LL VQF K V+ + P + +V LESG ++ YD+LV+ L
Sbjct: 62 RVNLEKLLNQDKVQFVKGTVQSIQPEEQ-------------SVTLESGDVLTYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD----SLIRVAVVGCGYS 255
G+EP+ + G E AF ++ +A R R+ E + + + V G G++
Sbjct: 109 GSEPETFGIEGLKEHAFSIRSI-NAVRHIREHIEYMFSKYKNEPHRTDYLTFVVGGAGFT 167
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
G+E + +RL E + Q +V+ + +AL VQ Y + +
Sbjct: 168 GIEFCGELGDRLPE--LCQEFDVDPELVKVYCIEAAPSALPGFDPELVQ----YAMDVLE 221
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
R G E + P P D +L IK + V+W G +
Sbjct: 222 RKG-IEFKIGTPIKQCTP--------DGVLLATGEEIK--------SKTVVWAAGVR--- 261
Query: 376 PHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
N+ + RG+ + DE L G+ +F +GD + + + GRP P TAQ+A
Sbjct: 262 -----GNSIVEKAGFEVMRGRVKVDEYLRAPGYENVFVVGDCALIFNEEGRPYPPTAQIA 316
Query: 435 FQQADFAGWNLWAAINDRPLLPFRF 459
Q+ + G NL A I R LP +F
Sbjct: 317 VQEGETLGENLAALI--RGELPQKF 339
>gi|407465783|ref|YP_006776665.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosopumilus sp. AR2]
gi|407048971|gb|AFS83723.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosopumilus sp. AR2]
Length = 452
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 112/454 (24%), Positives = 206/454 (45%), Gaps = 53/454 (11%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K +I ILGGGF G+ A +LES + ++ + +++++ + +F PML ++ SG ++
Sbjct: 3 RNKKKIVILGGGFAGVECARQLES-EFGNNPEIELVMISEDNFLLFTPMLPQVASGMIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I + T +F++ R+K + P L T GT S + + YD+LV
Sbjct: 62 RHIVLPIRTVCKKT--KFYEGRIKNIDPYGKL-------VTIWGTGDKRS-ISIHYDFLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++LG+E + + A+ TL DA + ++ +E E + S + VV
Sbjct: 112 IALGSETNFFGMADVEKNAYTMKTLNDAVMLRNRVIDMLEQAENETNPILRKSFLNFVVV 171
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G++G+E A + + L + P + LKV+ + ++L F
Sbjct: 172 GGGFAGIETAGELMDLLLD-------------ARKHYPTIHKEDLKVIVLEALGMILPGF 218
Query: 311 VRCIRRVGEFEASVKQPESG-------AIPNIAADKNSDKYILE-LQPAIKGLESQIFEA 362
+ ++ +F A K E G A+ + ++ + K + E L+ +I E
Sbjct: 219 NQ---KLADF-ARDKMIERGIDIRLKTAVTSFDGNEVTTKSLDENLKDSIDTSEIDSIVT 274
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD- 421
++WT G V P N + +G+ ++ L V P +FA+GD + D
Sbjct: 275 KTLIWTAG-------VTPVNTIKRSMFKTEKGKVIVNDYLEVLEFPGVFAIGDCALHLDP 327
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+ RPLP TAQ+A QA A NL + I + F + + G+M I+G+ +F+
Sbjct: 328 KTQRPLPPTAQIAEAQAKIAAKNLISLIRNSKKEKFVYHSKGQMAIIGKRSGI--ATFL- 384
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G+ + G + YL ++ T + +++V + W
Sbjct: 385 GMNISGFWAWLIWRNVYLSKITTFDKKIRVFLDW 418
>gi|29828434|ref|NP_823068.1| NADH dehydrogenase [Streptomyces avermitilis MA-4680]
gi|29605537|dbj|BAC69603.1| putative NADH dehydrogenase (complex I) [Streptomyces avermitilis
MA-4680]
Length = 453
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 203/479 (42%), Gaps = 100/479 (20%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRILIVGAGFAGYQTARTLSRLTRH---KADITLLNPTDYFLYLPLLPQVAAGILEPRR 59
Query: 139 IAPRFADLLANT----------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
+ A L + G+ V+ P +G
Sbjct: 60 VTVSLAGTLPHVRLVLGEAQTDGIDLDARTVRYTGPEGDVGT------------------ 101
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDS---- 243
+ YD LVL+ G+ KL +PG AE A F L +A + D ++E DS
Sbjct: 102 -LTYDRLVLAAGSVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELAAAAADSETCA 160
Query: 244 -LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET---------TICPTGTPGNRE- 292
VVG GY+G E+A V +L +V+ + + P PG E
Sbjct: 161 SRCTFVVVGAGYTGTEVA--VQGQLLTDALVRNRPLREGRRPRWLLLDVAPRVLPGLDER 218
Query: 293 ---AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
A +VL R V++ +G V+ + SD +L
Sbjct: 219 LSRTADRVLRKRGVEVRMGTSVK-------------------------EATSDGVLLS-- 251
Query: 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 409
+ + + ++W VG +P +P L LP+ + G+ + TL V GHP
Sbjct: 252 ------DGEFVDTRTLVWCVGVRP-----DPLAESL-GLPMES-GRLLVEPTLQVPGHPE 298
Query: 410 IFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
+FA GD++A+ D + G+ P TAQ A++Q AG N+ A+ P+R ++LG ++
Sbjct: 299 VFACGDAAAVPDLENPGQYTPMTAQHAWRQGKTAGHNVAASFGIGTRRPYRHRDLGFVVD 358
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVAL 526
LG AA +P G+ L GP+ + + +L +P + R++V WL ++ + A+
Sbjct: 359 LGGVQAAANPL---GIPLSGPLAGAVTRGYHLAAMPGN--RVRVAADWLLEAVLPRQAV 412
>gi|72160836|ref|YP_288493.1| NADH dehydrogenase [Thermobifida fusca YX]
gi|71914568|gb|AAZ54470.1| NADH dehydrogenase [Thermobifida fusca YX]
Length = 458
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 115/453 (25%), Positives = 185/453 (40%), Gaps = 71/453 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGG+ G+YTA RLE + + + + +VD + ++P L E +G + +
Sbjct: 20 PHVLIVGGGYLGMYTAKRLEKKLGPGEAR--ITVVDPNSYMTYQPFLPETAAGSISPRNV 77
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L T V RV + +H G L YD+LV++
Sbjct: 78 VVPLRKVLRRTRV--LNGRVVRI---EHAQRRVECVTNEGERRELT------YDYLVMAA 126
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCG 253
GA + +PG AE T+++A + + L +L + D +R VG G
Sbjct: 127 GAVSRTLPIPGLAEHGIGIKTVQEAAYLRNHVLEQLNIADSTDDPRVRRKALNFVFVGGG 186
Query: 254 YSGVELAATVSERLEEKG-IVQAINVET----------TICPTGTPGNREAALKVLSARK 302
++G E A + + + I +I+++ I P P AL+ L R
Sbjct: 187 FAGAEAIAELEDLARDATRIYPSISIDDLHFYLIEAADRILPEVGPEVGAKALQQLRNRG 246
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ + L F E++V Q IK + FEA
Sbjct: 247 IDVRLSTF---------LESAVDQ------------------------RIKLSDGTEFEA 273
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
++WT G KP P + DLPL +G +T E L V+G FA GD++ + D
Sbjct: 274 GTLVWTAGVKP------SPVVQASDLPLGPKGHVDTTEYLTVRGVENAFAGGDNAQVPDG 327
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
+G P AQ A +QA N+ A + + L P+R +NLG + LG A
Sbjct: 328 NGGYYPPNAQNAVRQAPVLADNIIATLRGKELKPYRHKNLGAVAGLGMYKGAA--QVFGA 385
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V L G A + +L+ +PT +++V W
Sbjct: 386 VKLTGLPAWLAHRSYHLLAVPTFNRKMRVLADW 418
>gi|423583122|ref|ZP_17559233.1| hypothetical protein IIA_04637 [Bacillus cereus VD014]
gi|401210031|gb|EJR16786.1| hypothetical protein IIA_04637 [Bacillus cereus VD014]
Length = 402
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 180/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G ++
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLEDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E+AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYAAEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|442318473|ref|YP_007358494.1| NADH dehydrogenase [Myxococcus stipitatus DSM 14675]
gi|441486115|gb|AGC42810.1| NADH dehydrogenase [Myxococcus stipitatus DSM 14675]
Length = 459
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 170/401 (42%), Gaps = 56/401 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ILGGGF GL A +L K P ++ LVD+ +F+P+LY++ + + E
Sbjct: 9 PHVVILGGGFAGLRAAQQLV-------KAPVRLTLVDRHNHHLFQPLLYQVATATLSPSE 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA LL GV V + P + VLL G + +YD+L+++
Sbjct: 62 IAAPLRALLGPRGVSVLLADVTGVDPENK-------------RVLLADGEL-KYDYLIVA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVVGC 252
GA A FA ++EDA + R+ L+E E + SL+ ++G
Sbjct: 108 TGATHSYFGNDHWAPFAPGLKSIEDAVEIRRRVLVAYELAERETDPRIRRSLLNFVIIGA 167
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVE+A +++E I + PG+ K + R +++L +
Sbjct: 168 GPTGVEMAGSLAE----------------ISRSSLPGD----FKNIDTRDARIILIEGMD 207
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ V + + K + + + + + + + + + EA V+W G
Sbjct: 208 KVLPVYPDDLTTKARRT--LERLGVEVRTGARVTNIDATGVYIGDEHIEARTVIWAAGV- 264
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P R +PL+ G+ L V G IF GD ++L+ + G P+P A
Sbjct: 265 -----AASPVARSLGVPLDRAGRVSVTPELTVPGREDIFVAGDLASLKQADGTPVPGLAP 319
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A Q+ A N+ + +P++PF + + G ++GR A
Sbjct: 320 AAMQEGKHAARNILHRLRGQPMVPFEYWDRGSYAVIGRGHA 360
>gi|228923663|ref|ZP_04086942.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423634202|ref|ZP_17609855.1| hypothetical protein IK7_00611 [Bacillus cereus VD156]
gi|228836024|gb|EEM81386.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401281448|gb|EJR87359.1| hypothetical protein IK7_00611 [Bacillus cereus VD156]
Length = 402
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 180/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G ++
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLEDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E+AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|255023086|ref|ZP_05295072.1| NADH dehydrogenase [Listeria monocytogenes FSL J1-208]
gi|422810419|ref|ZP_16858830.1| NADH dehydrogenase [Listeria monocytogenes FSL J1-208]
gi|378751537|gb|EHY62126.1| NADH dehydrogenase [Listeria monocytogenes FSL J1-208]
Length = 403
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 184/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKEEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKEYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEVREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|428280702|ref|YP_005562437.1| hypothetical protein BSNT_04723 [Bacillus subtilis subsp. natto
BEST195]
gi|291485659|dbj|BAI86734.1| hypothetical protein BSNT_04723 [Bacillus subtilis subsp. natto
BEST195]
Length = 419
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + D V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDDK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 180
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ I VE T+ P P + A+ L V
Sbjct: 181 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 240
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 241 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 270
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 271 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 323
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 324 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|390956728|ref|YP_006420485.1| NADH dehydrogenase, FAD-containing subunit [Terriglobus roseus DSM
18391]
gi|390411646|gb|AFL87150.1| NADH dehydrogenase, FAD-containing subunit [Terriglobus roseus DSM
18391]
Length = 450
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 179/410 (43%), Gaps = 64/410 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ R+ I+GGGF GL A E+L D + V LVD+ F+P+LY++ + +
Sbjct: 10 RKRVLIVGGGFAGLKAA---EALA---DAEVNVTLVDRRNHHTFQPLLYQVALAVLSPAD 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L + Q D V G + T L+SG ++EYD+L+L+
Sbjct: 64 IAQPIRAMLRSPNTQVLMDEVT--------GFD-----TAARRATLKSGTVLEYDYLILA 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVVGC 252
G+ A T+EDA + R+ L+E + + G+ + V+G
Sbjct: 111 TGSTHSYFGKDEWEHLAPGLKTIEDAVEIRRRVLLAFELAEGQMQETGRHPALNFVVIGG 170
Query: 253 GYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G +GVELA +S+ +L + + I+ T +VL +LG +
Sbjct: 171 GPTGVELAGAISDIAKLYIRRDFKHIDPATA--------------RVLIVEGSPTILGAY 216
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA---IKGLESQIFEADLVLW 367
++ ++++KQ + + ++ + ++QP + G E ++ + LW
Sbjct: 217 PEDLQ-----QSALKQ-----LAELDVQVRTNTRVTDVQPGYVVVDGHER--IDSVVTLW 264
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
G + P +L + ++ RG DE L GHP IF GD + S G+P+
Sbjct: 265 AAGVQ------ASPLGKLLGVEVDKRGAVLVDEQLHPVGHPEIFVCGDLAHAM-SEGKPV 317
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVS 476
P AQ A Q D+AG + + + PF + + G+M +GR+ A +
Sbjct: 318 PGVAQPAMQMGDYAGKTIALEVKGEKMKKPFHYHDKGDMATIGRSAAVAN 367
>gi|46908563|ref|YP_014952.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092974|ref|ZP_00230754.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 4b H7858]
gi|217963505|ref|YP_002349183.1| NADH dehydrogenase ndh [Listeria monocytogenes HCC23]
gi|226224942|ref|YP_002759049.1| NADH dehydrogenase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826349|ref|ZP_05231350.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J1-194]
gi|254854459|ref|ZP_05243807.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-503]
gi|254933661|ref|ZP_05267020.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes HPB2262]
gi|254992245|ref|ZP_05274435.1| NADH dehydrogenase [Listeria monocytogenes FSL J2-064]
gi|300766228|ref|ZP_07076191.1| hypothetical protein LMHG_11335 [Listeria monocytogenes FSL N1-017]
gi|386009110|ref|YP_005927388.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes L99]
gi|386027722|ref|YP_005948498.1| putative respiratory NADH dehydrogenase [Listeria monocytogenes M7]
gi|386733077|ref|YP_006206573.1| NADH dehydrogenase [Listeria monocytogenes 07PF0776]
gi|404281947|ref|YP_006682845.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2755]
gi|404287760|ref|YP_006694346.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750734|ref|YP_006674200.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes ATCC 19117]
gi|405753599|ref|YP_006677064.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2378]
gi|405756504|ref|YP_006679968.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2540]
gi|406705127|ref|YP_006755481.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes L312]
gi|417316179|ref|ZP_12102831.1| NADH dehydrogenase [Listeria monocytogenes J1816]
gi|417318376|ref|ZP_12104961.1| NADH dehydrogenase [Listeria monocytogenes J1-220]
gi|422410658|ref|ZP_16487619.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria monocytogenes FSL F2-208]
gi|424715207|ref|YP_007015922.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes
serotype 4b str. LL195]
gi|424824143|ref|ZP_18249156.1| hypothetical protein LMOSA_3580 [Listeria monocytogenes str. Scott
A]
gi|46881835|gb|AAT05129.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes serotype 4b str. F2365]
gi|47018628|gb|EAL09381.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 4b H7858]
gi|217332775|gb|ACK38569.1| NADH dehydrogenase ndh [Listeria monocytogenes HCC23]
gi|225877404|emb|CAS06118.1| Putative NADH dehydrogenase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258607860|gb|EEW20468.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-503]
gi|293585224|gb|EFF97256.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes HPB2262]
gi|293595589|gb|EFG03350.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J1-194]
gi|300513044|gb|EFK40128.1| hypothetical protein LMHG_11335 [Listeria monocytogenes FSL N1-017]
gi|307571920|emb|CAR85099.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes L99]
gi|313607088|gb|EFR83607.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria monocytogenes FSL F2-208]
gi|328465259|gb|EGF36516.1| NADH dehydrogenase [Listeria monocytogenes J1816]
gi|328471529|gb|EGF42416.1| NADH dehydrogenase [Listeria monocytogenes J1-220]
gi|332312823|gb|EGJ25918.1| hypothetical protein LMOSA_3580 [Listeria monocytogenes str. Scott
A]
gi|336024303|gb|AEH93440.1| putative respiratory NADH dehydrogenase [Listeria monocytogenes M7]
gi|384391835|gb|AFH80905.1| NADH dehydrogenase [Listeria monocytogenes 07PF0776]
gi|404219934|emb|CBY71298.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes ATCC 19117]
gi|404222799|emb|CBY74162.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2378]
gi|404225704|emb|CBY77066.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2540]
gi|404228582|emb|CBY49987.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2755]
gi|404246689|emb|CBY04914.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406362157|emb|CBY68430.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes L312]
gi|424014391|emb|CCO64931.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes
serotype 4b str. LL195]
Length = 403
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 184/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKEYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEVREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|365155019|ref|ZP_09351413.1| NADH dehydrogenase-like protein yumB [Bacillus smithii 7_3_47FAA]
gi|363628806|gb|EHL79513.1| NADH dehydrogenase-like protein yumB [Bacillus smithii 7_3_47FAA]
Length = 404
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 185/411 (45%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL+ ++ Q++ +++LV++ + L+E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLQKMLSQNE--AEIVLVNKHDYHYETTWLHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++++ + V+F + V+ + P+++ V+L +G + +YD+LV++
Sbjct: 61 VRYAISNVINRSKVKFVQATVENIKPNEN-------------KVVLNNGEL-DYDYLVVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDS---LIRVAVVGCGY 254
LG E + + G E+AF +++ A R+ + ++ N KD + + V G G+
Sbjct: 107 LGPESETFGIKGLKEYAFAITSVNAARRIREHIETQFATYNTEKDKKEERLTIVVGGAGF 166
Query: 255 SGVELAATVSERLEE----------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ E K + + T+ P P + A++ L + V+
Sbjct: 167 TGIEFLGELTNRVPELCREYDVDFQKVRIICVEAAPTVLPGFDPELVQYAMEQLQKKGVE 226
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++K+ I +A +N E++ +A
Sbjct: 227 FRIG-------------TAIKEATPDGII-VAKGEN---------------ETEEIKAGT 257
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N+ + N R + + +E L G+ +F +GD S + +
Sbjct: 258 VVWAAGVRG--------NSVIEKAGFENNRARVKVEEDLRAPGYNNVFIVGDCSLVINEE 309
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ N+ A + + F F N G + LG +DA
Sbjct: 310 TNRPYPPTAQIAMQQGVVCAKNIVALLKGQETQKFVFDNKGTVCSLGDDDA 360
>gi|290894186|ref|ZP_06557156.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J2-071]
gi|404408770|ref|YP_006691485.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2376]
gi|290556249|gb|EFD89793.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J2-071]
gi|404242919|emb|CBY64319.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2376]
Length = 403
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 184/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKEYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESETEVREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|222150816|ref|YP_002559969.1| hypothetical protein MCCL_0566 [Macrococcus caseolyticus JCSC5402]
gi|222119938|dbj|BAH17273.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 408
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 193/448 (43%), Gaps = 71/448 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ R+ ILGGG+ GL TA +L+ LV D + L++++E L+E +G +
Sbjct: 7 ERKRVVILGGGYAGLQTATKLQKLVSSQD--CDITLINKNEYHYESTWLHEASAGTREYQ 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ A +L + V F V + + TV G +D LV+
Sbjct: 65 DCLYPIASVLNQSKVDFVTAEVTKINKDEK-------------TVETTKGTF-NFDILVV 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCG 253
+LG E + + G E AF + A R+ + + + D + + V G G
Sbjct: 111 ALGFESETFGITGMKEHAFQIENINTARRIATHIEERFAHYANSTDKDDKDLAILVGGAG 170
Query: 254 YSGVELAATVSERLEEKGIVQAINVETT----ICPTGTPGNREAALKVLSARKVQLVLGY 309
++G+EL ++ER+ E + + N++ + C P L + S V+ V+ Y
Sbjct: 171 FTGIELLGELAERIPE--LCKEYNIDQSKVKVTCVEAAP----KMLPMFSETLVKYVVDY 224
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
R EF+ A P +AA++N +++++ E Q++ A+ V+W
Sbjct: 225 LEA---RGVEFKI--------ATPIVAANENG--FVVKVDEK----EEQLY-ANTVIWAA 266
Query: 370 GSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSG--- 424
G + ++L + + RG+ E L + G+ IF +GD SA+ G
Sbjct: 267 GVR---------GSKLMEESFDGVKRGRIVVREDLRIDGYDDIFVIGDCSAVMAGEGDNK 317
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
RPLP TAQ+A QQ +F + +N+ L F + + G + LG +D GV
Sbjct: 318 RPLPTTAQLAMQQGEFTADAVKRLLNNEKLATFEYDDKGTVCSLGSHDGV-------GVV 370
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVG 512
I + +K A++ +L K+G
Sbjct: 371 FGKEI--TGKKAAFMKKLIDTRALFKIG 396
>gi|52140601|ref|YP_086230.1| pyridine nucleotide-disulfide oxidoreductase (NADH dehydrogenase)
[Bacillus cereus E33L]
gi|228917555|ref|ZP_04081100.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229124469|ref|ZP_04253656.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 95/8201]
gi|229187166|ref|ZP_04314312.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BGSC 6E1]
gi|300117985|ref|ZP_07055742.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus SJ1]
gi|51974070|gb|AAU15620.1| pyridine nucleotide-disulphide oxidoreductase (NADH dehydrogenase)
[Bacillus cereus E33L]
gi|228596335|gb|EEK54009.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BGSC 6E1]
gi|228659017|gb|EEL14670.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 95/8201]
gi|228842122|gb|EEM87224.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|298724639|gb|EFI65324.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus SJ1]
Length = 402
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E+AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|312109668|ref|YP_003987984.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y4.1MC1]
gi|336234086|ref|YP_004586702.1| NADH dehydrogenase (ubiquinone) [Geobacillus thermoglucosidasius
C56-YS93]
gi|423718783|ref|ZP_17692965.1| NADH dehydrogenase [Geobacillus thermoglucosidans TNO-09.020]
gi|311214769|gb|ADP73373.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y4.1MC1]
gi|335360941|gb|AEH46621.1| NADH dehydrogenase (ubiquinone) [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368385|gb|EID45658.1| NADH dehydrogenase [Geobacillus thermoglucosidans TNO-09.020]
Length = 407
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 181/417 (43%), Gaps = 79/417 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + ILG G+GGL T +RL+ LV ++ + LV++++ L+E +G +
Sbjct: 5 KKPNVVILGAGYGGLMTTVRLQKLVGMNE--ANITLVNKNDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V F KD V + P + VL+E+G I YD+LV+
Sbjct: 63 RVRYPISDVIDRNKVNFVKDTVVKILPDEK-------------KVLMENGEIA-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF S + +A R R+ E + + ++ + + V G
Sbjct: 109 ALGFESETFGIKGLKEYAFSISNV-NAARQIREHIEYQFATYNTEEEKREERLTIVVGGA 167
Query: 253 GYSGVELAATVSERL----EEKGI----VQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E + RL E I V+ I VE PT PG E A+ L
Sbjct: 168 GFTGIEFLGELVNRLPQLCREYDIDPHKVRVICVEA--APTALPGFDPELVEYAVGQLER 225
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ +G ++K+ I I A KG + +
Sbjct: 226 KGVEFKIG-------------TAIKECTPDGI--IVA---------------KGDDVEEI 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS- 417
+A V+W G + +R+ D RG+ + D L V G IF +GD S
Sbjct: 256 KAGTVVWAAGVR---------GSRVVDESGFEAMRGRIKVDPFLRVPGREDIFVVGDCSL 306
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + + RP P TAQ+A Q+ + NL I + L PFR G + LG +DA
Sbjct: 307 VINEETNRPYPPTAQIAMQEGELCAKNLAVLIRQQGELQPFRPDIKGTVCSLGHDDA 363
>gi|423394837|ref|ZP_17372038.1| hypothetical protein ICU_00531 [Bacillus cereus BAG2X1-1]
gi|401656308|gb|EJS73829.1| hypothetical protein ICU_00531 [Bacillus cereus BAG2X1-1]
Length = 402
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILQDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEAKFAQYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKTFAFDNKGSVCSLGHDDA 358
>gi|229112373|ref|ZP_04241911.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock1-15]
gi|228671021|gb|EEL26327.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock1-15]
Length = 402
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G ++
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLEDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFSKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|390574798|ref|ZP_10254910.1| NADH dehydrogenase [Burkholderia terrae BS001]
gi|389933249|gb|EIM95265.1| NADH dehydrogenase [Burkholderia terrae BS001]
Length = 464
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 193/461 (41%), Gaps = 90/461 (19%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I I+GGGF G A LE +V + P +V+LV + F PML E++ V ++
Sbjct: 7 IVIIGGGFAGTTLARHLEKIV----RPPYRVILVSEESYTTFNPMLAEVVGASVFPEQVI 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L + R + +D V+ HG T L + ++ L+ + G
Sbjct: 63 VPIRQMLV-------RSRFIMATITD---VDYTRRVVHGRT--LAGTREIPFEHLIFAFG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELE-------RRNFGKDSLIRVAV 249
LD+VPG AE + P + DA RV R+L+ +E RR G V
Sbjct: 111 TRANLDIVPGMAEHSLPLKLVGDAMFIRNRVLRQLARIELETCPELRRRLGH-----FIV 165
Query: 250 VGCGYSGVELAATVSERLEE----KGIVQAINVETTICPTGT---PGNRE----AALKVL 298
+G G+SGVE+A +++ + +V+ + TI G P E AA +++
Sbjct: 166 IGGGFSGVEVAGELADYIHSIKRFYKLVKDDELAITILQDGERLLPELPEPLGIAAARLM 225
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
S R G VR RR + A+ + L+
Sbjct: 226 SGR------GIDVRLKRRAAQVHAN---------------------------GVTLLDGT 252
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGD 415
+ V+ T+G+KP P +L LP+ RG+ ET+ + V+G P ++A+GD
Sbjct: 253 TIDGGTVVCTIGTKP-----NPLVQKLIQSVALPVQ-RGRIETEPDMSVRGMPSLWAIGD 306
Query: 416 SSALRDSSGRPL-PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
+ + +++ L P TAQ A QA N+ + +P PF ++ G M +G
Sbjct: 307 CALVSNAATDSLSPPTAQFAMAQARQLAVNVAHCLLHQPGKPFSYETRGAMATIGHMKGV 366
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ GV + G + YL R+PT +L++ V W
Sbjct: 367 AQ---IYGVNITGLPAWLLWRALYLARMPTLGRKLRIFVEW 404
>gi|321312754|ref|YP_004205041.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis BSn5]
gi|320019028|gb|ADV94014.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis BSn5]
Length = 419
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + D V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDDK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 180
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ + VE T+ P P + A+ L V
Sbjct: 181 FTGIEFLGELAARVPELCKEYDVDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYLEENGV 240
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 241 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 270
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 271 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 323
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 324 DTERPYPPTAQIAMQQGVTVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|423405697|ref|ZP_17382846.1| hypothetical protein ICY_00382 [Bacillus cereus BAG2X1-3]
gi|401660909|gb|EJS78382.1| hypothetical protein ICY_00382 [Bacillus cereus BAG2X1-3]
Length = 402
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILQDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEAKFAQYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLIVLVRGKGEMKTFAFDNKGSVCSLGHDDA 358
>gi|254555447|ref|YP_003061864.1| NADH dehydrogenase [Lactobacillus plantarum JDM1]
gi|300766967|ref|ZP_07076880.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|448820031|ref|YP_007413193.1| NADH dehydrogenase [Lactobacillus plantarum ZJ316]
gi|254044374|gb|ACT61167.1| NADH dehydrogenase [Lactobacillus plantarum JDM1]
gi|300495505|gb|EFK30660.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|448273528|gb|AGE38047.1| NADH dehydrogenase [Lactobacillus plantarum ZJ316]
Length = 400
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 173/401 (43%), Gaps = 66/401 (16%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
+LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I +
Sbjct: 6 VLGGGYAGMRAVKFLQKSLPTED---EIILVDQTPTHTEKTNLHEVAAGTIAPDRITYQI 62
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
D++ VQF + VK + V E + YD+LVL+LG +
Sbjct: 63 PDIIGKR-VQFVQATVKSVDIEQK-------------QVTFEDHPEMTYDYLVLALGFQS 108
Query: 204 KLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVELAA 261
+ V GA E A P L + V L E + R + +++AV G G++G+EL
Sbjct: 109 ETFGVAGADENALPMDDLATSQAVYEHLEERFKAYRTSKDKNDLKIAVCGAGFTGIELLG 168
Query: 262 TVSE---RLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+++ RL+ K A + +I P T R+ ALK + V++ LG +
Sbjct: 169 ELTQTLPRLQAKYQTPAAKLVCLERMPSILPMFTQELRDYALKFMEKNNVEMRLGAVIEA 228
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
I+ GA+ ADKN + F A+ ++WTVG
Sbjct: 229 IK-------------PGAVVYSDADKNEHE----------------FTANTIIWTVGVSG 259
Query: 374 LLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 431
HV + D + R + L ++GHP +F +GD +A+ D S RP P TA
Sbjct: 260 --SHV------IADSGFDQRRNRVVVKPDLSLEGHPEVFIVGDVAAVMDPESNRPYPTTA 311
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
Q+A + A N+ A +++ F +++ G + L D
Sbjct: 312 QIALAAGEQAAKNIGALRHNQATATFHYESSGTVASLSDRD 352
>gi|118480017|ref|YP_897168.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis str. Al Hakam]
gi|196043918|ref|ZP_03111155.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB108]
gi|218906124|ref|YP_002453958.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
AH820]
gi|225866901|ref|YP_002752279.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB102]
gi|376268834|ref|YP_005121546.1| NADH dehydrogenase [Bacillus cereus F837/76]
gi|118419242|gb|ABK87661.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis str. Al Hakam]
gi|196025254|gb|EDX63924.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB108]
gi|218538590|gb|ACK90988.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH820]
gi|225787427|gb|ACO27644.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB102]
gi|364514634|gb|AEW58033.1| NADH dehydrogenase [Bacillus cereus F837/76]
Length = 403
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E+AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 359
>gi|229026388|ref|ZP_04182745.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1272]
gi|423388774|ref|ZP_17366000.1| hypothetical protein ICG_00622 [Bacillus cereus BAG1X1-3]
gi|228734851|gb|EEL85489.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1272]
gi|401642849|gb|EJS60555.1| hypothetical protein ICG_00622 [Bacillus cereus BAG1X1-3]
Length = 402
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGEDTELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|423619351|ref|ZP_17595184.1| hypothetical protein IIO_04676 [Bacillus cereus VD115]
gi|401251388|gb|EJR57666.1| hypothetical protein IIO_04676 [Bacillus cereus VD115]
Length = 402
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKSAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGEDTELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|398308146|ref|ZP_10511620.1| NAD-disulfide oxidoreductase [Bacillus mojavensis RO-H-1]
Length = 404
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 177/411 (43%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKHVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + RV R+ EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANI-NTSRVLREHIELQFATYNIEAEKRPDRLTIVVGGAG 165
Query: 254 YSGVE----LAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E LAA V E +E + +V+ I VE T+ P P + A+ L V
Sbjct: 166 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ E + + G K E + ++
Sbjct: 226 EFKIGTAVQ--------ECTAEGVTVGK---------------------KDEEPEQIKSQ 256
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 257 TVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFINED 309
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ N+ I L F+ G + LG ++A
Sbjct: 310 TDRPYPPTAQIAMQQGTTVAKNIAKLIKGGELEEFKPDIKGTVASLGEHNA 360
>gi|405355405|ref|ZP_11024631.1| NADH dehydrogenase [Chondromyces apiculatus DSM 436]
gi|397091747|gb|EJJ22549.1| NADH dehydrogenase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 449
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 171/400 (42%), Gaps = 58/400 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILGGGF GLY A L K P +V LVD+ +F+P+LY++ + + EIA
Sbjct: 1 MVILGGGFAGLYAARHLY-------KAPVRVTLVDRQNHHLFQPLLYQVATATLSPSEIA 53
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
LL V V GV+ T G VLL G + +YD+LV++ G
Sbjct: 54 APLRALLGRHQVGVVLAEVT--------GVD-----TAGKRVLLSDGEL-KYDYLVVATG 99
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVVGCGY 254
A A FA ++EDA ++ R+ L+E E + SL+ ++G G
Sbjct: 100 ATHSYFGNDKWAAFAPGLKSIEDAVQIRRRILVAFELAEREPDPEIRRSLLNFVIIGAGP 159
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELA +++E I PG+ + + ++ +++L + +
Sbjct: 160 TGVELAGSLAE----------------ISRHSLPGD----FRNIDPKQARIIL---IEGV 196
Query: 315 RRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
RV + + + + + + + + + ++ A VLW G
Sbjct: 197 DRVLPAYPDDLSSKALRTLEKLGVEVRTGARVTNINEEGVFIGTEFIPARTVLWAAGV-- 254
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P R + L+ G+ L V GH +F +GD +++ D+ G+P+P A
Sbjct: 255 ----AASPVARSLGVELDRAGRVLVTPELTVPGHEDVFVVGDLASINDADGKPVPGLAPA 310
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A Q+ A N+ + +P+ PF + + G ++GR A
Sbjct: 311 AMQEGKHAAHNIRRRLQGKPMEPFSYWDRGSYAVIGRGHA 350
>gi|403379417|ref|ZP_10921474.1| hypothetical protein PJC66_06260 [Paenibacillus sp. JC66]
Length = 396
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 171/411 (41%), Gaps = 77/411 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ILG G+GG+ TA+RL+ + ++ V LV++ + L+ +G
Sbjct: 5 PRIVILGAGYGGIVTAIRLQKDLNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDKPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + F K V L ++ V+LE + YD+L++ L
Sbjct: 63 RVEISKLIDEYKIDFVKSTVTELKLNEQ-------------KVVLEDSTL-SYDYLIIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE----RRNFGKDSLIRVAVVGCGYS 255
G EP+ VPG + A ++ ++ R+ R+ E + +R + + V G G++
Sbjct: 109 GGEPETFGVPGLLQNALNIRSI-NSVRLIREHIEYQFAKYKREPHRTDYLTFIVGGAGFT 167
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +++R+ + +V+ N+E PT PG E A++VL + V
Sbjct: 168 GIEFVGELADRVPKLCKEFDVNPELVKIYNIEA--APTALPGFDPQLVEYAIQVLEEKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
L ++ G A+ ++ S
Sbjct: 226 TFKLATAIKECTPEGVVLATGEEIRSAT-------------------------------- 253
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N+ L + L RG+ D+ L + +F LGD S +
Sbjct: 254 -VIWTGGIRG--------NHMLEEAGLETIRGRVVVDDYLRTPEYDNVFVLGDCSMVMSP 304
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ+A QQ + +NL A+I + PL F F N G + LGR A
Sbjct: 305 EGRPYPPTAQIATQQGELCSYNLVASIRNAPLKKFSFHNRGVVASLGRRQA 355
>gi|27376162|ref|NP_767691.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 110]
gi|27349301|dbj|BAC46316.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 110]
Length = 433
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 186/452 (41%), Gaps = 57/452 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL RL + L+D+ +F+P+LY++ + + EIA
Sbjct: 19 RVVIVGAGFGGLEATYRLAG------TPVDITLIDRRNHHLFQPLLYQVATASLATSEIA 72
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ +DR ++ + GV+ C VL++ G V YD LVL+
Sbjct: 73 WPVRHLM--------RDRREVTTLFATVSGVDATRRC-----VLIDDGSEVPYDTLVLAT 119
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVA-----VVGCG 253
GA +FA TLEDA + R L ER D R A +VG G
Sbjct: 120 GARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPAKRAARLTFVIVGAG 179
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+GVELA T++E N++TT EA +VL+ +L Y
Sbjct: 180 PTGVELAGTIAEMAHHTLPEDFRNIDTTKARVVLI---EAGPRVLAGFADELS-AYAQAS 235
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
+ ++G E + QP + D++ Y +A +W G +
Sbjct: 236 LEKIG-VEVVLGQPVT------EIDRDGVVY-----------GGTRLDAKTKIWAAGVRA 277
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P +P + G+ + + L + GHP IFA+GD+ + G+P+P A
Sbjct: 278 ------SPAAEWLGVPADRAGRVQVEADLTIPGHPEIFAIGDTVTISAWEGKPVPGIAPA 331
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A QQ + A + FR+++ G + +G+ A + ++ L G I
Sbjct: 332 AKQQGRHVAETVKARLRGETKGAFRYKHSGSLAQIGKRLAVIDFGRIK---LRGTIAWWI 388
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
+A++ L HRL V +SWL A D A
Sbjct: 389 WGIAHIYFLIGLRHRLSVALSWLWIYARDQRA 420
>gi|308179448|ref|YP_003923576.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380031360|ref|YP_004888351.1| NADH dehydrogenase [Lactobacillus plantarum WCFS1]
gi|308044939|gb|ADN97482.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342240603|emb|CCC77837.1| NADH dehydrogenase [Lactobacillus plantarum WCFS1]
Length = 400
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 173/401 (43%), Gaps = 66/401 (16%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
+LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I +
Sbjct: 6 VLGGGYAGMRAVKFLQKSLPTED---EIILVDQTPTHTEKTNLHEVAAGTIAPDRITYQI 62
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
D++ VQF + VK + V E + YD+LVL+LG +
Sbjct: 63 PDIIGKR-VQFVQATVKNVDIEQK-------------QVTFEDHPEMTYDYLVLALGFQS 108
Query: 204 KLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVELAA 261
+ V GA E A P L + V L E + R + +++AV G G++G+EL
Sbjct: 109 ETFGVAGADENALPMDDLATSQAVYEHLEERFKAYRTSKDKNDLKIAVCGAGFTGIELLG 168
Query: 262 TVSE---RLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+++ RL+ K A + +I P T R+ ALK + V++ LG +
Sbjct: 169 ELTQTLPRLQAKYQTPAAKLVCLERMPSILPMFTQELRDYALKFMEKNNVEMRLGAVIEA 228
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
I+ GA+ ADKN + F A+ ++WTVG
Sbjct: 229 IK-------------PGAVVYSDADKNEHE----------------FTANTIIWTVGVSG 259
Query: 374 LLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 431
HV + D + R + L ++GHP +F +GD +A+ D S RP P TA
Sbjct: 260 --SHV------IADSGFDQRRNRVVVKPDLSLEGHPEVFIVGDVAAVMDPESNRPYPTTA 311
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
Q+A + A N+ A +++ F +++ G + L D
Sbjct: 312 QIALAAGEQAAKNIGALRHNQATATFHYESSGTVASLSDRD 352
>gi|229032569|ref|ZP_04188534.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1271]
gi|228728754|gb|EEL79765.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1271]
Length = 402
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|228910761|ref|ZP_04074570.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis IBL 200]
gi|228968031|ref|ZP_04129038.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
sotto str. T04001]
gi|423363489|ref|ZP_17340987.1| hypothetical protein IC1_05464 [Bacillus cereus VD022]
gi|423386433|ref|ZP_17363688.1| hypothetical protein ICE_04178 [Bacillus cereus BAG1X1-2]
gi|423527238|ref|ZP_17503683.1| hypothetical protein IGE_00790 [Bacillus cereus HuB1-1]
gi|423566188|ref|ZP_17542463.1| hypothetical protein II5_05591 [Bacillus cereus MSX-A1]
gi|228791654|gb|EEM39249.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228848712|gb|EEM93557.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis IBL 200]
gi|401075224|gb|EJP83610.1| hypothetical protein IC1_05464 [Bacillus cereus VD022]
gi|401192502|gb|EJQ99517.1| hypothetical protein II5_05591 [Bacillus cereus MSX-A1]
gi|401632790|gb|EJS50574.1| hypothetical protein ICE_04178 [Bacillus cereus BAG1X1-2]
gi|402453823|gb|EJV85622.1| hypothetical protein IGE_00790 [Bacillus cereus HuB1-1]
Length = 402
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|383453361|ref|YP_005367350.1| putative NADH dehydrogenase [Corallococcus coralloides DSM 2259]
gi|380733579|gb|AFE09581.1| putative NADH dehydrogenase [Corallococcus coralloides DSM 2259]
Length = 459
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 176/412 (42%), Gaps = 78/412 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + ILGGGFGGLY A L +V +VD+ +F+P+LY++ + + +I
Sbjct: 9 PHVVILGGGFGGLYAARYLRK------AGVRVTMVDRHNHHLFQPLLYQVATATLSPSDI 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A A L A G +D V++L ++ GV+ T VLL G + YD+L+++
Sbjct: 63 A---APLRAMLG----RDHVQVLL-AEVTGVD-----TARKRVLLADGELA-YDFLIVAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCG 253
GA + + T+EDA + R++ +E E + +L+ A++G G
Sbjct: 109 GATHSYFGNDAWSRHSMGLKTVEDALEIRRRVLLAFEQAEREPDPERRRALLTFAIIGAG 168
Query: 254 YSGVELAATVSE--RLEEKGIVQAINVETT----------ICPTGTPGNREAALKVLSAR 301
+GVELA ++E R G Q I+ + PT P N + AR
Sbjct: 169 PTGVELAGALAEISRNSLSGDFQNIDPRDARVILIEGMDRVLPT-YPENLS-----VEAR 222
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
+V + LG VR RV N D +++ P +
Sbjct: 223 QVLVGLGVEVRTGTRV---------------------TNIDAAGVDMGP-------EHLA 254
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
A VLW G + P R + L+ G+ L V GHP IF +GD + ++
Sbjct: 255 ARTVLWAAGVE------ASPVARSLGVTLDRAGRVPVTPELTVPGHPDIFVVGDLALVKQ 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
G +P A A Q+ A NL + +P+ PFR+ + G ++GR A
Sbjct: 309 EDGSAVPGVAPAAMQEGKHAVLNLRRQLAGQPMQPFRYWDRGTYAVIGRGHA 360
>gi|336114138|ref|YP_004568905.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 2-6]
gi|335367568|gb|AEH53519.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 2-6]
Length = 393
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 172/409 (42%), Gaps = 74/409 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL +AL + +DD + +V++ L+ L +G V ++
Sbjct: 4 KIVILGAGYGGLLSALSAREYLSKDD--AAITVVNRVPDHQIITELHRLAAGGVSEKRVS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L V D V + P V L SG + YD LV++LG
Sbjct: 62 LPLRKLFKGKDVDVQVDEVTKISPDSK-------------EVSLGSGFKLNYDVLVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDSLIRVAVV-GCGYSGVE 258
+E +PG E +F +++DA R+ + S LE+ K+ VV G G +G+E
Sbjct: 109 SETAFFGIPGLEENSFLLKSVDDAKRIHAHIESCLEQYAKTKNKADATFVVGGGGLTGIE 168
Query: 259 LAATVSERLE--------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQLVLG 308
L +++++ + + I VE +I P P E A K L AR VQ G
Sbjct: 169 LVGELADKVPGWSKKFAIDPSEISLICVEAAPSILPNFAPNLIERATKSLEARGVQFFTG 228
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
IP N ++EL+ + Q E ++WT
Sbjct: 229 -----------------------IPVTKFQDN----VVELK------DGQKIETKTLVWT 255
Query: 369 VGSKPLLPHVEPPNNRL---HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG- 424
G + NR+ + +N RG+A + L HP +F GDS+ + S G
Sbjct: 256 GGVQ---------GNRVVANSGIEVN-RGRATVNAYLQSTSHPDVFVAGDSAVVFPSEGA 305
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+++Q + G+NL+A + + F+ N G + LGR DA
Sbjct: 306 RPYPPTAQMSWQMGELIGYNLYAYLKGGKMQTFQPVNSGTLASLGRKDA 354
>gi|218900076|ref|YP_002448487.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
G9842]
gi|402563570|ref|YP_006606294.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-771]
gi|218544154|gb|ACK96548.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
G9842]
gi|401792222|gb|AFQ18261.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-771]
Length = 403
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 359
>gi|261420389|ref|YP_003254071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y412MC61]
gi|319768056|ref|YP_004133557.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y412MC52]
gi|261376846|gb|ACX79589.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. Y412MC61]
gi|317112922|gb|ADU95414.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y412MC52]
Length = 407
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 179/415 (43%), Gaps = 75/415 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 63 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + DA R R+ E + + K+ + + V G
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 167
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E ++ R+ E V+ I VE PT PG E A+ L
Sbjct: 168 GFTGIEFLGELANRMPELCREYDIDPHKVRIICVEA--APTALPGFDPELVEYAVSQLER 225
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ +G ++K+ I I A KG + +
Sbjct: 226 KGVEFRIG-------------TAIKECTPDGI--IVA---------------KGDDVEEI 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+A V+W G + E AR + + D L V GH IF +GD S +
Sbjct: 256 KAGTVIWAAGVRGSRVIEESGFE-------AARARIKVDPYLRVPGHEDIFVVGDCSLVI 308
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
D + RP P TAQ+A Q+ NL I + L PF+ G + LG +DA
Sbjct: 309 DEETNRPYPPTAQIAMQEGQLCAKNLAVLIRGQGELEPFKPDIKGTVCSLGHDDA 363
>gi|297528907|ref|YP_003670182.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. C56-T3]
gi|297252159|gb|ADI25605.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. C56-T3]
Length = 407
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 179/415 (43%), Gaps = 75/415 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 63 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + DA R R+ E + + K+ + + V G
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 167
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E ++ R+ E V+ I VE PT PG E A+ L
Sbjct: 168 GFTGIEFLGELANRMPELCREYDIDPHKVRIICVEA--APTALPGFDPELVEYAVSQLER 225
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ +G ++K+ I I A KG + +
Sbjct: 226 KGVEFRIG-------------TAIKECTPDGI--IVA---------------KGDDVEEI 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+A V+W G + E AR + + D L V GH IF +GD S +
Sbjct: 256 KAGTVIWAAGVRGSRVIEESGFE-------AARARIKVDPYLRVPGHEDIFVVGDCSLVI 308
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
D + RP P TAQ+A Q+ NL I + L PF+ G + LG +DA
Sbjct: 309 DEETNRPYPPTAQIAMQEGQLCAKNLEVLIRGQGELEPFKPDIKGTVCSLGHDDA 363
>gi|16801550|ref|NP_471818.1| hypothetical protein lin2488 [Listeria innocua Clip11262]
gi|423098531|ref|ZP_17086276.1| pyridine nucleotide-disulfide oxidoreductase [Listeria innocua ATCC
33091]
gi|16415010|emb|CAC97715.1| lin2488 [Listeria innocua Clip11262]
gi|370794989|gb|EHN62726.1| pyridine nucleotide-disulfide oxidoreductase [Listeria innocua ATCC
33091]
Length = 403
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 182/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLDAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIG 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKEYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESETEVREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|423451778|ref|ZP_17428631.1| hypothetical protein IEE_00522 [Bacillus cereus BAG5X1-1]
gi|423471113|ref|ZP_17447857.1| hypothetical protein IEM_02419 [Bacillus cereus BAG6O-2]
gi|423557507|ref|ZP_17533810.1| hypothetical protein II3_02712 [Bacillus cereus MC67]
gi|401143982|gb|EJQ51515.1| hypothetical protein IEE_00522 [Bacillus cereus BAG5X1-1]
gi|401192913|gb|EJQ99921.1| hypothetical protein II3_02712 [Bacillus cereus MC67]
gi|402432593|gb|EJV64649.1| hypothetical protein IEM_02419 [Bacillus cereus BAG6O-2]
Length = 402
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L++G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKNGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 106 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEEKFAQYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRIPELCKEYDVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDAELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRIKVDEYMHAPGHEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|56421488|ref|YP_148806.1| NADH dehydrogenase [Geobacillus kaustophilus HTA426]
gi|56381330|dbj|BAD77238.1| NADH dehydrogenase [Geobacillus kaustophilus HTA426]
Length = 404
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 179/415 (43%), Gaps = 75/415 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 2 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 60 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + DA R R+ E + + K+ + + V G
Sbjct: 106 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 164
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E ++ R+ E V+ I VE PT PG E A+ L
Sbjct: 165 GFTGIEFLGELANRMPELCREYDIDPHKVRIICVEA--APTALPGFDPELVEYAVSQLER 222
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ +G ++K+ I I A KG + +
Sbjct: 223 KGVEFRIG-------------TAIKECTPDGI--IVA---------------KGDDVEEI 252
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+A V+W G + E AR + + D L V GH IF +GD S +
Sbjct: 253 KAGTVIWAAGVRGSRVIEESGFE-------AARARIKVDPYLRVPGHEDIFVVGDCSLVI 305
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
D + RP P TAQ+A Q+ NL I + L PF+ G + LG +DA
Sbjct: 306 DEETNRPYPPTAQIAMQEGQLCAKNLAVLIRGQGELEPFKPDIKGTVCSLGHDDA 360
>gi|375010075|ref|YP_004983708.1| NADH dehydrogenase-like protein yumB [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359288924|gb|AEV20608.1| NADH dehydrogenase-like protein yumB [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 409
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 179/415 (43%), Gaps = 75/415 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 7 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 65 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + DA R R+ E + + K+ + + V G
Sbjct: 111 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 169
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E ++ R+ E V+ I VE PT PG E A+ L
Sbjct: 170 GFTGIEFLGELANRMPELCREYDIDPHKVRIICVEA--APTALPGFDPELVEYAVSQLER 227
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ +G ++K+ I I A KG + +
Sbjct: 228 KGVEFRIG-------------TAIKECTPDGI--IVA---------------KGDDVEEI 257
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+A V+W G + E AR + + D L V GH IF +GD S +
Sbjct: 258 KAGTVIWAAGVRGSRVIEESGFE-------AARARIKVDPYLRVPGHEDIFVVGDCSLVI 310
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
D + RP P TAQ+A Q+ NL I + L PF+ G + LG +DA
Sbjct: 311 DEETNRPYPPTAQIAMQEGQLCAKNLAVLIRGQGELEPFKPDIKGTVCSLGHDDA 365
>gi|418273938|ref|ZP_12889520.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum NC8]
gi|376010644|gb|EHS83969.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum NC8]
Length = 400
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 174/402 (43%), Gaps = 68/402 (16%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
+LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I +
Sbjct: 6 VLGGGYAGMRAVKFLQKSLPTED---EIILVDQTPTHTEKTNLHEVAAGTIAPDRITYQI 62
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
D++ VQF + VK + V E + YD+LVL+LG +
Sbjct: 63 PDIIGKR-VQFVQATVKNVDIEQK-------------QVTFEDHPEMTYDYLVLALGFQS 108
Query: 204 KLDVVPGAAEFAFPFSTLEDACRVDRKLSE---LERRNFGKDSLIRVAVVGCGYSGVELA 260
+ V GA E A P L + V L E R + K+ L ++AV G G++G+EL
Sbjct: 109 ETFGVAGADENALPMDDLATSQAVYEHLEERFKAYRASKDKNDL-KIAVCGAGFTGIELL 167
Query: 261 ATVSE---RLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+++ RL+ K A + +I P T R+ ALK + V++ LG +
Sbjct: 168 GELTQTLPRLQAKYQTPAAKLVCLERMPSILPMFTQELRDYALKFMEKNNVEMRLGAVIE 227
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
I+ GA+ ADKN + F A+ ++WTVG
Sbjct: 228 AIK-------------PGAVVYSDADKNEHE----------------FTANTIIWTVGVS 258
Query: 373 PLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
HV + D + R + L ++GHP +F +GD +A+ D S RP P T
Sbjct: 259 G--SHV------IADSGFDQRRNRVVVKPDLSLEGHPEVFIVGDVAAVMDPESNRPYPTT 310
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
AQ+A + A N+ A +++ F +++ G + L D
Sbjct: 311 AQIALAAGEQAAKNIGALRHNQATATFHYESSGTVASLSDRD 352
>gi|331697251|ref|YP_004333490.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
gi|326951940|gb|AEA25637.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
Length = 462
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 198/482 (41%), Gaps = 108/482 (22%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P ++PRI I+G GF G + A L LV QV LV ++ F++ P+L E+ + +
Sbjct: 22 PLTREPRIVIVGSGFAGYHAARALARLV---HGAAQVSLVSSTDYFLYLPLLPEVATAIL 78
Query: 135 DAWEIAPRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLES 186
D + A L +GV + R+ + P
Sbjct: 79 DPRRVTVPLAATLPGVSCVLSEVSGVDVEQRRIAMRTPE--------------------- 117
Query: 187 GLIVE--YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDS 243
G VE YD LV+++G+ +L +PG A F + +A + D ++E +D
Sbjct: 118 GRAVEFGYDRLVIAVGSVNRLLPIPGVPRIAHGFRGIPEALYLRDHVTRQIELAELAEDP 177
Query: 244 LIRVA-----VVGCGYSGVELAATVSERLEEKGIVQA-------------INVETTICPT 285
R A VVG GY+G ELAA L +V+A ++ + + P
Sbjct: 178 TERAARCTFVVVGAGYTGTELAA--QGPLFTAALVRARPALHDQPIRWLLLDTASRVLPG 235
Query: 286 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI 345
P A +VL R V++ + R EA+
Sbjct: 236 LDPRLGRTADQVLRRRGVEIGV--------RTSITEAT---------------------- 265
Query: 346 LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCV 404
A++ Q+ ++W VG +P + + D+ L R G+ DE L V
Sbjct: 266 ---DDAVRLTNGQLVPTRSLIWCVGVRP--------DPLVDDIGLPTRQGRLVVDEYLTV 314
Query: 405 KGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 462
GHP +FA GD++A+ D + G TAQ A +Q A N+ A + P+R ++L
Sbjct: 315 PGHPELFACGDAAAVPDPARPGELAAMTAQHAQRQGRLAARNVAATLGRGTRAPYRHRDL 374
Query: 463 GEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 522
G + LG AA +P G+ L GP+ + +L +P + RL++ + W A+D
Sbjct: 375 GFAVDLGGTQAAANPV---GIPLSGPLAKVVSRGYHLAAIPAN--RLRIAIDW----ALD 425
Query: 523 SV 524
+V
Sbjct: 426 AV 427
>gi|423417151|ref|ZP_17394240.1| hypothetical protein IE3_00623 [Bacillus cereus BAG3X2-1]
gi|401108569|gb|EJQ16500.1| hypothetical protein IE3_00623 [Bacillus cereus BAG3X2-1]
Length = 402
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E+AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|30022966|ref|NP_834597.1| NADH dehydrogenase [Bacillus cereus ATCC 14579]
gi|206970360|ref|ZP_03231313.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH1134]
gi|218230971|ref|YP_002369725.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
B4264]
gi|449091880|ref|YP_007424321.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|29898526|gb|AAP11798.1| NADH dehydrogenase [Bacillus cereus ATCC 14579]
gi|206734937|gb|EDZ52106.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH1134]
gi|218158928|gb|ACK58920.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
B4264]
gi|449025637|gb|AGE80800.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 403
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFSKYATEQRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 359
>gi|228955189|ref|ZP_04117198.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228961178|ref|ZP_04122800.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229048618|ref|ZP_04194176.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH676]
gi|229072413|ref|ZP_04205616.1| S-adenosyl-methyltransferase MraW [Bacillus cereus F65185]
gi|229082171|ref|ZP_04214636.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock4-2]
gi|229130185|ref|ZP_04259145.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-Cer4]
gi|229148143|ref|ZP_04276453.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-ST24]
gi|229153113|ref|ZP_04281293.1| S-adenosyl-methyltransferase MraW [Bacillus cereus m1550]
gi|229193191|ref|ZP_04320143.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10876]
gi|365163101|ref|ZP_09359223.1| hypothetical protein HMPREF1014_04686 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423411298|ref|ZP_17388418.1| hypothetical protein IE1_00602 [Bacillus cereus BAG3O-2]
gi|423427044|ref|ZP_17404075.1| hypothetical protein IE5_04733 [Bacillus cereus BAG3X2-2]
gi|423432917|ref|ZP_17409921.1| hypothetical protein IE7_04733 [Bacillus cereus BAG4O-1]
gi|423438345|ref|ZP_17415326.1| hypothetical protein IE9_04526 [Bacillus cereus BAG4X12-1]
gi|423507650|ref|ZP_17484218.1| hypothetical protein IG1_05192 [Bacillus cereus HD73]
gi|423588778|ref|ZP_17564864.1| hypothetical protein IIE_04189 [Bacillus cereus VD045]
gi|423631637|ref|ZP_17607384.1| hypothetical protein IK5_04487 [Bacillus cereus VD154]
gi|423644120|ref|ZP_17619737.1| hypothetical protein IK9_04064 [Bacillus cereus VD166]
gi|423650803|ref|ZP_17626373.1| hypothetical protein IKA_04590 [Bacillus cereus VD169]
gi|423657858|ref|ZP_17633157.1| hypothetical protein IKG_04846 [Bacillus cereus VD200]
gi|228590311|gb|EEK48178.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10876]
gi|228630379|gb|EEK87028.1| S-adenosyl-methyltransferase MraW [Bacillus cereus m1550]
gi|228635318|gb|EEK91838.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-ST24]
gi|228653299|gb|EEL09177.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-Cer4]
gi|228701163|gb|EEL53684.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock4-2]
gi|228710736|gb|EEL62708.1| S-adenosyl-methyltransferase MraW [Bacillus cereus F65185]
gi|228722737|gb|EEL74124.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH676]
gi|228798525|gb|EEM45516.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228804490|gb|EEM51100.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|363617076|gb|EHL68485.1| hypothetical protein HMPREF1014_04686 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401108314|gb|EJQ16246.1| hypothetical protein IE1_00602 [Bacillus cereus BAG3O-2]
gi|401109659|gb|EJQ17581.1| hypothetical protein IE5_04733 [Bacillus cereus BAG3X2-2]
gi|401113168|gb|EJQ21038.1| hypothetical protein IE7_04733 [Bacillus cereus BAG4O-1]
gi|401117960|gb|EJQ25793.1| hypothetical protein IE9_04526 [Bacillus cereus BAG4X12-1]
gi|401225586|gb|EJR32133.1| hypothetical protein IIE_04189 [Bacillus cereus VD045]
gi|401263774|gb|EJR69896.1| hypothetical protein IK5_04487 [Bacillus cereus VD154]
gi|401271612|gb|EJR77623.1| hypothetical protein IK9_04064 [Bacillus cereus VD166]
gi|401281019|gb|EJR86934.1| hypothetical protein IKA_04590 [Bacillus cereus VD169]
gi|401288723|gb|EJR94467.1| hypothetical protein IKG_04846 [Bacillus cereus VD200]
gi|402443353|gb|EJV75259.1| hypothetical protein IG1_05192 [Bacillus cereus HD73]
Length = 402
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFSKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|239828206|ref|YP_002950830.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. WCH70]
gi|239808499|gb|ACS25564.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. WCH70]
Length = 404
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 183/417 (43%), Gaps = 79/417 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + ILG G+GGL T +RL+ LV ++ + LV++++ L+E +G +
Sbjct: 2 KKPNVVILGAGYGGLMTTVRLQELVGINE--ASITLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P + VL+++G + YD+LV+
Sbjct: 60 RVRYPISDVIDRNKVKFVQDTVVKILPDEK-------------KVLMKNGELT-YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + +A R R+ E + + +D + + V G
Sbjct: 106 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYNTEEEKRDERLTIVVGGA 164
Query: 253 GYSGV----ELAATVSERLEEKGI----VQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+ EL V E E I V+ I VE PT PG E A+ L
Sbjct: 165 GFTGIEFLGELVNRVPELCREYDIDPHKVRIICVEA--APTALPGFDPELVEYAVNQLER 222
Query: 301 RKVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
+ V+ +G ++ C PE + KG + +
Sbjct: 223 KGVEFKIGTAIKEC------------TPEGIIVA-------------------KGDDIEE 251
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS- 417
+A V+W G + HV + + A RG+ + D L V GH IF +GD S
Sbjct: 252 IKAGTVVWAAGVRG--SHV------IDESGFEAMRGRIKVDPFLRVPGHEDIFVVGDCSL 303
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + + RP P TAQ+A Q+ + NL I + L PFR G + LG +DA
Sbjct: 304 IINEETNRPYPPTAQIAMQEGEVCAKNLAVLIRQQGELQPFRPDIKGTVCSLGEDDA 360
>gi|229014115|ref|ZP_04171236.1| S-adenosyl-methyltransferase MraW [Bacillus mycoides DSM 2048]
gi|229062600|ref|ZP_04199910.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH603]
gi|423368929|ref|ZP_17346360.1| hypothetical protein IC3_04029 [Bacillus cereus VD142]
gi|423490086|ref|ZP_17466768.1| hypothetical protein IEU_04709 [Bacillus cereus BtB2-4]
gi|423495810|ref|ZP_17472454.1| hypothetical protein IEW_04708 [Bacillus cereus CER057]
gi|423497396|ref|ZP_17474013.1| hypothetical protein IEY_00623 [Bacillus cereus CER074]
gi|423513605|ref|ZP_17490135.1| hypothetical protein IG3_05101 [Bacillus cereus HuA2-1]
gi|423519608|ref|ZP_17496089.1| hypothetical protein IG7_04678 [Bacillus cereus HuA2-4]
gi|423595865|ref|ZP_17571895.1| hypothetical protein IIG_04732 [Bacillus cereus VD048]
gi|423597786|ref|ZP_17573786.1| hypothetical protein III_00588 [Bacillus cereus VD078]
gi|423660234|ref|ZP_17635403.1| hypothetical protein IKM_00631 [Bacillus cereus VDM022]
gi|423670488|ref|ZP_17645517.1| hypothetical protein IKO_04185 [Bacillus cereus VDM034]
gi|423673305|ref|ZP_17648244.1| hypothetical protein IKS_00848 [Bacillus cereus VDM062]
gi|228716703|gb|EEL68399.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH603]
gi|228747069|gb|EEL96951.1| S-adenosyl-methyltransferase MraW [Bacillus mycoides DSM 2048]
gi|401079043|gb|EJP87347.1| hypothetical protein IC3_04029 [Bacillus cereus VD142]
gi|401149646|gb|EJQ57113.1| hypothetical protein IEW_04708 [Bacillus cereus CER057]
gi|401157749|gb|EJQ65145.1| hypothetical protein IG7_04678 [Bacillus cereus HuA2-4]
gi|401163116|gb|EJQ70469.1| hypothetical protein IEY_00623 [Bacillus cereus CER074]
gi|401221759|gb|EJR28373.1| hypothetical protein IIG_04732 [Bacillus cereus VD048]
gi|401239318|gb|EJR45750.1| hypothetical protein III_00588 [Bacillus cereus VD078]
gi|401296174|gb|EJS01794.1| hypothetical protein IKO_04185 [Bacillus cereus VDM034]
gi|401303895|gb|EJS09456.1| hypothetical protein IKM_00631 [Bacillus cereus VDM022]
gi|401310933|gb|EJS16242.1| hypothetical protein IKS_00848 [Bacillus cereus VDM062]
gi|402429765|gb|EJV61847.1| hypothetical protein IEU_04709 [Bacillus cereus BtB2-4]
gi|402445270|gb|EJV77143.1| hypothetical protein IG3_05101 [Bacillus cereus HuA2-1]
Length = 402
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 106 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEEKFAQYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRIPELCKEYDVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDAELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRIKVDEYMHAPGHEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|75758939|ref|ZP_00739050.1| NADH dehydrogenase family [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74493613|gb|EAO56718.1| NADH dehydrogenase family [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 432
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 32 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 89
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 90 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 135
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 136 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 194
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 195 TGIEYIGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 254
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 255 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 284
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 285 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 336
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 337 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 388
>gi|423521199|ref|ZP_17497672.1| hypothetical protein IGC_00582 [Bacillus cereus HuA4-10]
gi|401179570|gb|EJQ86741.1| hypothetical protein IGC_00582 [Bacillus cereus HuA4-10]
Length = 402
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 106 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEEKFAQYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRIPALCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDAELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRIKVDEYMHAPGHEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|228929954|ref|ZP_04092966.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228829713|gb|EEM75338.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 402
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E+AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E ++K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYSVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|407707430|ref|YP_006831015.1| chloramphenicol resistance protein [Bacillus thuringiensis MC28]
gi|407385115|gb|AFU15616.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis MC28]
Length = 402
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|119356447|ref|YP_911091.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeobacteroides DSM 266]
gi|119353796|gb|ABL64667.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeobacteroides DSM 266]
Length = 435
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 183/445 (41%), Gaps = 59/445 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF GL TA L + + +V L+D+ +F+P+LY++ + +
Sbjct: 2 KQRVVIIGGGFTGLNTAKLL-----GNKQNIEVTLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LAN + FK V+ A T+ + G I YD+LVL
Sbjct: 57 IAAPLRNMLANYDNITVFKGIVE-------------SADIANKTIFTDFGDI-PYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRN--FGKDSLIRVAVVG 251
+ G + +FA TL A + R++ E ER + L+ +VG
Sbjct: 103 ACGVQHHYFGNNQWEKFAPGLKTLAQAKEIRRRVMEAYECAERTKDPVERKKLLTFVIVG 162
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++ E +R K +L + V
Sbjct: 163 GGPTGVELAGSIGEM-----------------------SRYTLSKFYRNIDPKLTRIFIV 199
Query: 312 RCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
R+ G F + + ++ + + + ++ + ++ EA VLW G
Sbjct: 200 EAAPRILGSFSPELTSKATRSLEKLGVQVWTSSMVTDVDANGVQIGNERIEAATVLWAAG 259
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ + L + G+ +E L + GHP +FA GD + +G+ LP
Sbjct: 260 VTAI------AIGKNMGLETDHLGRILVNEDLSIPGHPELFAGGDLAHFELENGKTLPGL 313
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A VA QQ G N+ + + PFR+++ G+M +G+N A V + + DG +
Sbjct: 314 APVALQQGRAIGRNILLDLKKKARKPFRYRDKGQMATIGKNKAIVE---IGSLKFDGILA 370
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSW 515
L ++ L + HR+ V + W
Sbjct: 371 WFTWLLVHIYFLTSFRHRVFVLLQW 395
>gi|228903426|ref|ZP_04067553.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis IBL 4222]
gi|228856201|gb|EEN00734.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis IBL 4222]
Length = 402
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYIGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|443634285|ref|ZP_21118460.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345961|gb|ELS60023.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 419
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 180
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ I VE T+ P P + A+ L +
Sbjct: 181 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGI 240
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 241 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 270
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 271 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 323
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 324 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|228988170|ref|ZP_04148268.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229158527|ref|ZP_04286587.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 4342]
gi|228624963|gb|EEK81730.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 4342]
gi|228771581|gb|EEM20049.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 402
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|16080263|ref|NP_391090.1| NAD-disulfide oxidoreductase [Bacillus subtilis subsp. subtilis
str. 168]
gi|402777367|ref|YP_006631311.1| NAD-disulfide oxidoreductase [Bacillus subtilis QB928]
gi|430757814|ref|YP_007208285.1| hypothetical protein A7A1_2322 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|81814667|sp|O05267.1|YUMB_BACSU RecName: Full=NADH dehydrogenase-like protein YumB
gi|1934829|emb|CAB07953.1| NADH dehydrogenase [Bacillus subtilis subsp. subtilis str. 168]
gi|2635707|emb|CAB15200.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
subtilis str. 168]
gi|402482546|gb|AFQ59055.1| Putative NAD-disulfide oxidoreductase [Bacillus subtilis QB928]
gi|407966053|dbj|BAM59292.1| NAD-disulfide oxidoreductase [Bacillus subtilis BEST7003]
gi|430022334|gb|AGA22940.1| Hypothetical protein YumB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 406
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 5 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 63 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 109 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 167
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ I VE T+ P P + A+ L V
Sbjct: 168 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 227
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 228 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 257
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 258 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 310
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 311 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 362
>gi|221311152|ref|ZP_03592999.1| hypothetical protein Bsubs1_17426 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315479|ref|ZP_03597284.1| hypothetical protein BsubsN3_17342 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320394|ref|ZP_03601688.1| hypothetical protein BsubsJ_17305 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324678|ref|ZP_03605972.1| hypothetical protein BsubsS_17456 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|418031588|ref|ZP_12670073.1| hypothetical protein BSSC8_10170 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351472647|gb|EHA32760.1| hypothetical protein BSSC8_10170 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407962039|dbj|BAM55279.1| NAD-disulfide oxidoreductase [Bacillus subtilis BEST7613]
Length = 419
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 180
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ I VE T+ P P + A+ L V
Sbjct: 181 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 240
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 241 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 270
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 271 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 323
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 324 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|434378074|ref|YP_006612718.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-789]
gi|401876631|gb|AFQ28798.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-789]
Length = 403
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYIGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEEVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 359
>gi|229181223|ref|ZP_04308554.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 172560W]
gi|228602277|gb|EEK59767.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 172560W]
Length = 426
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 26 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 83
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 84 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 129
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 130 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFSKYATEQRDELVTIVVGGAGF 188
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 189 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 248
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 249 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 278
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 279 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 330
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 331 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 382
>gi|229076305|ref|ZP_04209270.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock4-18]
gi|229099386|ref|ZP_04230316.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-29]
gi|229105546|ref|ZP_04236180.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-28]
gi|229118398|ref|ZP_04247752.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock1-3]
gi|423377241|ref|ZP_17354525.1| hypothetical protein IC9_00594 [Bacillus cereus BAG1O-2]
gi|423440352|ref|ZP_17417258.1| hypothetical protein IEA_00682 [Bacillus cereus BAG4X2-1]
gi|423449499|ref|ZP_17426378.1| hypothetical protein IEC_04107 [Bacillus cereus BAG5O-1]
gi|423463415|ref|ZP_17440183.1| hypothetical protein IEK_00602 [Bacillus cereus BAG6O-1]
gi|423532768|ref|ZP_17509186.1| hypothetical protein IGI_00600 [Bacillus cereus HuB2-9]
gi|423541969|ref|ZP_17518359.1| hypothetical protein IGK_04060 [Bacillus cereus HuB4-10]
gi|423622005|ref|ZP_17597783.1| hypothetical protein IK3_00603 [Bacillus cereus VD148]
gi|228664968|gb|EEL20456.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock1-3]
gi|228677816|gb|EEL32059.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-28]
gi|228684010|gb|EEL37958.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-29]
gi|228706740|gb|EEL58948.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock4-18]
gi|401127780|gb|EJQ35487.1| hypothetical protein IEC_04107 [Bacillus cereus BAG5O-1]
gi|401169306|gb|EJQ76552.1| hypothetical protein IGK_04060 [Bacillus cereus HuB4-10]
gi|401262673|gb|EJR68814.1| hypothetical protein IK3_00603 [Bacillus cereus VD148]
gi|401639843|gb|EJS57580.1| hypothetical protein IC9_00594 [Bacillus cereus BAG1O-2]
gi|402420123|gb|EJV52395.1| hypothetical protein IEA_00682 [Bacillus cereus BAG4X2-1]
gi|402422286|gb|EJV54528.1| hypothetical protein IEK_00602 [Bacillus cereus BAG6O-1]
gi|402464745|gb|EJV96434.1| hypothetical protein IGI_00600 [Bacillus cereus HuB2-9]
Length = 402
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|163119630|ref|YP_080492.2| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|404490584|ref|YP_006714690.1| NADH dehydrogenase YumB [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52349589|gb|AAU42223.1| putative NADH dehydrogenase YumB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|145903140|gb|AAU24854.2| FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB
[Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 403
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 178/411 (43%), Gaps = 70/411 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 3 KPKVVVLGAGYGGLMTVTRLVKKIGINE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + G V+LE+G + YD+LV++
Sbjct: 61 CRYQIKDVINTSRVNFVQDTVKKIDKE-------------GKKVVLETGEL-SYDYLVVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LG+ P+ + G E AF S + ++ R R+ E + + ++ R + V G G
Sbjct: 107 LGSVPETFGISGLKEHAFSISNI-NSSRQLREHIEYQFATYNTEAEKRPERLTIVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R+ E + V+ I VE ++ P P + A+ L + V
Sbjct: 166 FTGIEFLGEMANRIPELCREYDIDRQQVRLICVEAAPSVLPGFEPELVDYAVNYLEGKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G +VK+ I + D +++ +A
Sbjct: 226 EFKIG-------------TAVKECTPDGII-VGKDDQTEE----------------IKAG 255
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + P +E N RG+ + L V+GH IF +GD S + +
Sbjct: 256 TVVWAAGVRG-NPIIEESGFE------NMRGRVKVKPDLRVEGHDDIFVIGDCSLIINEE 308
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ++ QQ + NL A I+ + F F N G + LG +DA
Sbjct: 309 TERPYPPTAQISMQQGETCANNLAALIHGKETETFSFDNKGSVASLGEHDA 359
>gi|296330731|ref|ZP_06873207.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675796|ref|YP_003867468.1| NAD-disulfide oxidoreductase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296152045|gb|EFG92918.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414040|gb|ADM39159.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 419
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYHTEAEKRPDRLTIVVGGAG 180
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ I VE T+ P P + A+ L V
Sbjct: 181 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 240
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 241 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 270
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 271 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 323
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 324 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEQFKPDIKGTVASLGEHNA 375
>gi|452913164|ref|ZP_21961792.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis MB73/2]
gi|452118192|gb|EME08586.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis MB73/2]
Length = 404
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ I VE T+ P P + A+ L V
Sbjct: 166 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 225
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 226 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 256 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 309 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 360
>gi|163942641|ref|YP_001647525.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus weihenstephanensis KBAB4]
gi|163864838|gb|ABY45897.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bacillus weihenstephanensis KBAB4]
Length = 432
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 32 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 89
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 90 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 135
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 136 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEEKFAQYATEKRDELVTIVVGGAGF 194
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 195 TGIEYVGELANRIPELCKEYDVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 254
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 255 FRIGTAIK--------EAT----EEGII------------------VANGDDAELLKSET 284
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 285 VVWAAGVRG--------NGIVEESGFEAMRGRIKVDEYMHAPGHEDVFMVGDAALIINEE 336
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 337 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 388
>gi|297559059|ref|YP_003678033.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843507|gb|ADH65527.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 458
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/461 (25%), Positives = 189/461 (40%), Gaps = 79/461 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D + P I I+GGG+ G+YTA RLE + + + + ++D + ++P L E SG +
Sbjct: 16 DAEIPHILIVGGGYLGMYTARRLEKKLGAGEAR--ITVIDPNSYMTYQPFLPETASGSIS 73
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL----IVE 191
+ + V+ RV + +D TV E + +
Sbjct: 74 PRHVVVPLRKVFKR--VRVLGGRVVRIDHADR-------------TVRYEPNVGEAQTLA 118
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR---- 246
YD+LV++ GA + +PG AE+ T+E+A + + L +L + D IR
Sbjct: 119 YDYLVMAAGAVSRTLPIPGLAEWGIGIKTVEEAAFLRNHVLDQLSIADSTDDEAIRRKAL 178
Query: 247 -VAVVGCGYSGVELAATVSERLEEK-------GI--VQAINVETT--ICPTGTPGNREAA 294
VG G++G E A + + + + G+ VQ +E I P P A
Sbjct: 179 NFVFVGGGFAGAEAIAELEDMVRDAVRHHPSIGLEDVQFYLIEAADKILPEVGPEVGSKA 238
Query: 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354
L L R + + L F+ E++V Q IK
Sbjct: 239 LNQLRRRGIDVRLKTFL---------ESAVDQ------------------------HIKL 265
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
+ F++ ++WT G KP P DLPL +G +T E L V G FA G
Sbjct: 266 SDGTEFDSGTLVWTAGVKP------SPVVAASDLPLGPKGHLDTSEYLAVNGVENAFAGG 319
Query: 415 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
D++ + D +G P AQ A +QA N+ AA+ +R +NLG + LG + A
Sbjct: 320 DNAQVPDGNGGYYPPNAQNAVRQAPVLADNVIAALRGTEPKAYRHKNLGAVAGLGVHKGA 379
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ L+G + A + +L +PT +++V W
Sbjct: 380 A--QLFGKIKLNGRLAWYAHRSYHLFAVPTFNRKMRVLSDW 418
>gi|16804427|ref|NP_465912.1| hypothetical protein lmo2389 [Listeria monocytogenes EGD-e]
gi|254829546|ref|ZP_05234233.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL N3-165]
gi|284802831|ref|YP_003414696.1| hypothetical protein LM5578_2588 [Listeria monocytogenes 08-5578]
gi|284995973|ref|YP_003417741.1| hypothetical protein LM5923_2538 [Listeria monocytogenes 08-5923]
gi|386044692|ref|YP_005963497.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386051359|ref|YP_005969350.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-561]
gi|386054581|ref|YP_005972139.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes Finland 1998]
gi|404284883|ref|YP_006685780.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2372]
gi|404411633|ref|YP_006697221.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC5850]
gi|404414411|ref|YP_006699998.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC7179]
gi|405759438|ref|YP_006688714.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2479]
gi|16411877|emb|CAD00467.1| lmo2389 [Listeria monocytogenes EGD-e]
gi|258601961|gb|EEW15286.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL N3-165]
gi|284058393|gb|ADB69334.1| hypothetical protein LM5578_2588 [Listeria monocytogenes 08-5578]
gi|284061440|gb|ADB72379.1| hypothetical protein LM5923_2538 [Listeria monocytogenes 08-5923]
gi|345537926|gb|AEO07366.1| hypothetical protein LMRG_02734 [Listeria monocytogenes 10403S]
gi|346425205|gb|AEO26730.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-561]
gi|346647232|gb|AEO39857.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes Finland 1998]
gi|404231459|emb|CBY52863.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC5850]
gi|404234385|emb|CBY55788.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2372]
gi|404237320|emb|CBY58722.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2479]
gi|404240110|emb|CBY61511.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC7179]
gi|441472166|emb|CCQ21921.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes]
gi|441475307|emb|CCQ25061.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes N53-1]
Length = 403
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 184/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ +T F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNDTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKQYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEVREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|30264968|ref|NP_847345.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. Ames]
gi|47778370|ref|YP_021813.2| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. 'Ames Ancestor']
gi|49187786|ref|YP_031039.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. Sterne]
gi|49480999|ref|YP_038949.1| pyridine nucleotide-disulfide oxidoreductase (NADH dehydrogenase)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|165870930|ref|ZP_02215582.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0488]
gi|167634939|ref|ZP_02393257.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0442]
gi|167639985|ref|ZP_02398253.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0193]
gi|170685814|ref|ZP_02877037.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0465]
gi|170707067|ref|ZP_02897524.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0389]
gi|177652196|ref|ZP_02934699.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0174]
gi|190567107|ref|ZP_03020022.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Tsiankovskii-I]
gi|196032831|ref|ZP_03100244.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus W]
gi|196040569|ref|ZP_03107869.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
NVH0597-99]
gi|227817697|ref|YP_002817706.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. CDC 684]
gi|229604035|ref|YP_002869171.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. A0248]
gi|301056415|ref|YP_003794626.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
biovar anthracis str. CI]
gi|421507874|ref|ZP_15954791.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. UR-1]
gi|30259645|gb|AAP28831.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Ames]
gi|47552075|gb|AAT34288.2| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. 'Ames Ancestor']
gi|49181713|gb|AAT57089.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Sterne]
gi|49332555|gb|AAT63201.1| pyridine nucleotide-disulphide oxidoreductase (NADH dehydrogenase)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|164713439|gb|EDR18964.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0488]
gi|167512066|gb|EDR87444.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0193]
gi|167529689|gb|EDR92438.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0442]
gi|170128170|gb|EDS97040.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0389]
gi|170670278|gb|EDT21018.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0465]
gi|172082202|gb|EDT67268.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0174]
gi|190561611|gb|EDV15581.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Tsiankovskii-I]
gi|195994260|gb|EDX58215.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus W]
gi|196028701|gb|EDX67308.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
NVH0597-99]
gi|227004319|gb|ACP14062.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. CDC 684]
gi|229268443|gb|ACQ50080.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0248]
gi|300378584|gb|ADK07488.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
biovar anthracis str. CI]
gi|401821980|gb|EJT21133.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. UR-1]
Length = 403
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 359
>gi|423485047|ref|ZP_17461736.1| hypothetical protein IEQ_04824 [Bacillus cereus BAG6X1-2]
gi|401136447|gb|EJQ44037.1| hypothetical protein IEQ_04824 [Bacillus cereus BAG6X1-2]
Length = 403
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L++G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKNGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 107 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEEKFAQYATEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDAELLKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRIKVDEYMHAPGHEDVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 359
>gi|452856820|ref|YP_007498503.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081080|emb|CCP22847.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 406
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 174/411 (42%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + R + EL+ + ++ R + V G G
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 167
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R E + +V+ + VE T+ P P E A++ L ++ V
Sbjct: 168 FTGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVEYAVQYLESKGV 227
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ R G + K + E + ++
Sbjct: 228 EFKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQ 258
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 259 TVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEE 311
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 312 TERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|384182721|ref|YP_005568483.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324328805|gb|ADY24065.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 402
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|421639989|ref|ZP_16080577.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. BF1]
gi|403392822|gb|EJY90070.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. BF1]
Length = 403
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 359
>gi|319647617|ref|ZP_08001835.1| YumB protein [Bacillus sp. BT1B_CT2]
gi|317389958|gb|EFV70767.1| YumB protein [Bacillus sp. BT1B_CT2]
Length = 408
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 178/411 (43%), Gaps = 70/411 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 8 KPKVVVLGAGYGGLMTVTRLVKKIGINE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 65
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + G V+LE+G + YD+LV++
Sbjct: 66 CRYQIKDVINTSRVNFVQDTVKKIDKE-------------GKKVVLETGEL-SYDYLVVA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LG+ P+ + G E AF S + ++ R R+ E + + ++ R + V G G
Sbjct: 112 LGSVPETFGISGLKEHAFSISNI-NSSRQLREHIEYQFATYNTEAEKRPERLTIVVGGAG 170
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R+ E + V+ I VE ++ P P + A+ L + V
Sbjct: 171 FTGIEFLGEMANRIPELCREYDIDRQQVRLICVEAAPSVLPGFEPELVDYAVNYLEGKGV 230
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G +VK+ I + D +++ +A
Sbjct: 231 EFKIG-------------TAVKECTPDGII-VGKDDQTEE----------------IKAG 260
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + P +E N RG+ + L V+GH IF +GD S + +
Sbjct: 261 TVVWAAGVRG-NPIIEESGFE------NMRGRVKVKPDLRVEGHDDIFVIGDCSLIINEE 313
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ++ QQ + NL A I+ + F F N G + LG +DA
Sbjct: 314 TERPYPPTAQISMQQGETCANNLAALIHGKETETFSFDNKGSVASLGEHDA 364
>gi|206976493|ref|ZP_03237400.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
H3081.97]
gi|402554958|ref|YP_006596229.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
FRI-35]
gi|206745417|gb|EDZ56817.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
H3081.97]
gi|401796168|gb|AFQ10027.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
FRI-35]
Length = 403
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 359
>gi|423683696|ref|ZP_17658535.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Bacillus licheniformis WX-02]
gi|383440470|gb|EID48245.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Bacillus licheniformis WX-02]
Length = 406
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 178/411 (43%), Gaps = 70/411 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 6 KPKVVVLGAGYGGLMTVTRLVKKIGINE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + G V+LE+G + YD+LV++
Sbjct: 64 CRYQIKDVINTSRVNFVQDTVKKIDKE-------------GKKVVLETGEL-SYDYLVVA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LG+ P+ + G E AF S + ++ R R+ E + + ++ R + V G G
Sbjct: 110 LGSVPETFGISGLKEHAFSISNI-NSSRQLREHIEYQFATYNTEAEKRPERLTIVVGGAG 168
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R+ E + V+ I VE ++ P P + A+ L + V
Sbjct: 169 FTGIEFLGEMANRIPELCREYDIDRQQVRLICVEAAPSVLPGFEPELVDYAVNYLEGKGV 228
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G +VK+ I + D +++ +A
Sbjct: 229 EFKIG-------------TAVKECTPDGII-VGKDDQTEE----------------IKAG 258
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + P +E N RG+ + L V+GH IF +GD S + +
Sbjct: 259 TVVWAAGVRG-NPIIEESGFE------NMRGRVKVKPDLRVEGHDDIFVIGDCSLIINEE 311
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ++ QQ + NL A I+ + F F N G + LG +DA
Sbjct: 312 TERPYPPTAQISMQQGETCANNLAALIHGKETETFSFDNKGSVASLGEHDA 362
>gi|65316917|ref|ZP_00389876.1| COG1252: NADH dehydrogenase, FAD-containing subunit [Bacillus
anthracis str. A2012]
gi|228948649|ref|ZP_04110927.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229094025|ref|ZP_04225111.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-42]
gi|254687259|ref|ZP_05151116.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. CNEVA-9066]
gi|254725272|ref|ZP_05187055.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A1055]
gi|254735404|ref|ZP_05193112.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Western North America USA6153]
gi|254740671|ref|ZP_05198362.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Kruger B]
gi|254753067|ref|ZP_05205103.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Vollum]
gi|254761409|ref|ZP_05213430.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Australia 94]
gi|386738798|ref|YP_006211979.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus anthracis str. H9401]
gi|423554599|ref|ZP_17530925.1| hypothetical protein IGW_05229 [Bacillus cereus ISP3191]
gi|228689376|gb|EEL43193.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-42]
gi|228810956|gb|EEM57299.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|384388650|gb|AFH86311.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus anthracis str. H9401]
gi|401180482|gb|EJQ87641.1| hypothetical protein IGW_05229 [Bacillus cereus ISP3191]
Length = 402
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|87125061|ref|ZP_01080908.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
[Synechococcus sp. RS9917]
gi|86167381|gb|EAQ68641.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
[Synechococcus sp. RS9917]
Length = 503
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 189/462 (40%), Gaps = 79/462 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + + ++ L+D+ +F+P+LY++ +G V
Sbjct: 18 RHAPHVVIVGGGFAGVRACKALA------NAEVRITLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V + P+ G ++ +G YD L
Sbjct: 72 GDVATPLRQLVGKQRNVQVLLGEVTQIHPA--------------GKQIVFNGKAYSYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDSLIR-----VAV 249
VL+ G+ FA P LE A + R+L LE+ D +R V +
Sbjct: 118 VLATGSGSTFFGHEDWRTFAPPMKILEHAEEIRRRLLMALEQAEQTPDPQVRQFLQTVVI 177
Query: 250 VGCGYSGVELAATVSERLEE--KGIVQAINVETTICPTGTPGNR----------EAALKV 297
VG G +G E+A VSE + + + +N +TT PG+R E+A K
Sbjct: 178 VGGGPTGCEMAGAVSELMRNAMRREFRQLNPDTTRIVLVDPGDRVLRAMPEMLSESARKT 237
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L V+++ V+ +R E +V PE
Sbjct: 238 LEGLGVEMLFKGRVQTMR---PGEVTVGTPEG---------------------------D 267
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+ +A V+WT G +P H+ D L+ G+ + VKGHP I +GD
Sbjct: 268 RRLQAATVIWTAGVRP--SHLGRKLAEEIDCDLDRGGRVVVEPDFSVKGHPEIRVVGDLC 325
Query: 418 ALRDSS-GRPLPATAQVAFQQADFAGWNLWAAI--NDRPLLPFRFQNLGEMMILGRNDAA 474
+ G+PLP A A Q F G ++ A + ++RP F + + G M +L R A
Sbjct: 326 CYTHTKDGKPLPGMAGPATQAGGFVGKDIAAIVAGSNRP--NFSWFDFGSMAVLDRVSAV 383
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ G G IG +A+L +P E+R+ + + WL
Sbjct: 384 AD---LRGFKFSGGIGWLLWAVAHLAFMPNTENRISLLIKWL 422
>gi|448239216|ref|YP_007403274.1| putative pyridine nucleotide-disulfide oxidoreductase [Geobacillus
sp. GHH01]
gi|445208058|gb|AGE23523.1| putative pyridine nucleotide-disulfide oxidoreductase [Geobacillus
sp. GHH01]
Length = 407
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 178/415 (42%), Gaps = 75/415 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 63 RVRYLIRDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + DA R R+ E + + K+ + + V G
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 167
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E ++ R+ E V+ I VE PT PG E A+ L
Sbjct: 168 GFTGIEFLGELANRMPELCREYDIDPHKVRIICVEA--APTALPGFDPELVEYAVSQLER 225
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ +G ++K+ I I A KG + +
Sbjct: 226 KGVEFRIG-------------TAIKECTPDGI--IVA---------------KGDDVEEI 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+A V+W G + E AR + + D L V GH IF +GD S +
Sbjct: 256 KAGTVIWAAGVRGSRVIEESGFE-------AARARIKVDPYLRVPGHEDIFVVGDCSLVI 308
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
D + RP P TAQ+A Q+ NL I + L PF+ G + LG +DA
Sbjct: 309 DEETNRPYPPTAQIAMQEGQLCAKNLAVLIRGQGELEPFKPDIKGTVCSLGHDDA 363
>gi|229163907|ref|ZP_04291847.1| S-adenosyl-methyltransferase MraW [Bacillus cereus R309803]
gi|228619528|gb|EEK76414.1| S-adenosyl-methyltransferase MraW [Bacillus cereus R309803]
Length = 418
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/412 (23%), Positives = 176/412 (42%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 18 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 75
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 76 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 121
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 122 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYATEQRDELVTIVVGGAGF 180
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 181 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 240
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ + E G I G ++++ +++
Sbjct: 241 FRIGTAIK------------EGTEEGII------------------VANGDDTELIKSET 270
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 271 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 322
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 323 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 374
>gi|222098379|ref|YP_002532437.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus Q1]
gi|423608724|ref|ZP_17584616.1| hypothetical protein IIK_05304 [Bacillus cereus VD102]
gi|221242438|gb|ACM15148.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus Q1]
gi|401237359|gb|EJR43814.1| hypothetical protein IIK_05304 [Bacillus cereus VD102]
Length = 402
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQHNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|42784110|ref|NP_981357.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus ATCC
10987]
gi|42740041|gb|AAS43965.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus ATCC
10987]
Length = 432
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 32 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 89
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 90 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 135
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 136 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 194
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 195 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 254
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 255 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 284
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 285 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 336
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 337 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 388
>gi|423375500|ref|ZP_17352837.1| hypothetical protein IC5_04553 [Bacillus cereus AND1407]
gi|401092186|gb|EJQ00320.1| hypothetical protein IC5_04553 [Bacillus cereus AND1407]
Length = 402
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|229135755|ref|ZP_04264527.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-ST196]
gi|229169650|ref|ZP_04297352.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH621]
gi|228613846|gb|EEK70969.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH621]
gi|228647721|gb|EEL03784.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-ST196]
Length = 426
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 26 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 83
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 84 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 129
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 130 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEEKFAQYATEKRDELVTIVVGGAGF 188
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 189 TGIEYVGELANRIPELCKEYDVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 248
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 249 FRIGTAIK--------EAT----EEGII------------------VANGDDAELLKSET 278
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 279 VVWAAGVRG--------NGIVEESGFEAMRGRIKVDEYMHAPGHEDVFMVGDAALIINEE 330
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 331 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 382
>gi|229199075|ref|ZP_04325758.1| S-adenosyl-methyltransferase MraW [Bacillus cereus m1293]
gi|423573396|ref|ZP_17549515.1| hypothetical protein II9_00617 [Bacillus cereus MSX-D12]
gi|228584346|gb|EEK42481.1| S-adenosyl-methyltransferase MraW [Bacillus cereus m1293]
gi|401214943|gb|EJR21664.1| hypothetical protein II9_00617 [Bacillus cereus MSX-D12]
Length = 402
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|47095868|ref|ZP_00233472.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 1/2a F6854]
gi|254914064|ref|ZP_05264076.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes J2818]
gi|254938379|ref|ZP_05270076.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes F6900]
gi|386048052|ref|YP_005966384.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes J0161]
gi|47015745|gb|EAL06674.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 1/2a F6854]
gi|258610992|gb|EEW23600.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes F6900]
gi|293592083|gb|EFG00418.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes J2818]
gi|345535043|gb|AEO04484.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes J0161]
Length = 403
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 184/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ +T F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNDTKTTFVQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKQYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEVREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|418323985|ref|ZP_12935242.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
pettenkoferi VCU012]
gi|365228914|gb|EHM70087.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
pettenkoferi VCU012]
Length = 402
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 180/408 (44%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + ++D ++ L+++++ L+E +G +
Sbjct: 3 QSRKKVLVLGAGYAGLQTVTKLQKQLSKED--AEITLINKNDYHYEATWLHEASAGTLSY 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ +L V F K VK + N T G + +YD LV
Sbjct: 61 EDALYPVESVLDKDKVNFVKAEVK------KIDRNAQKVETDAG--------VFDYDILV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVGC 252
+ LG E + + G E AF + + ++ R K + D I + V G
Sbjct: 107 VGLGFESETFGIDGMKEHAFQIENILTSRKLSRHIEDKFANYASSKEKDDKDIAILVGGA 166
Query: 253 GYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G++G+E ++ER+ E K V+ V T EAA K+L +LV +
Sbjct: 167 GFTGIEFLGELTERIPELCNKYGVEQSRVHITCV--------EAAPKMLPQFSDELV-NH 217
Query: 310 FVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
V + G EF+ A P +AA N +++E + G + Q+ EA+ V+W
Sbjct: 218 AVSFLEDKGVEFKI--------ATPIVAA--NEKGFVVE----VDGKKEQL-EANTVVWA 262
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
G + N + D RG+ ++ L +KGH IF +GD SA + + R
Sbjct: 263 AGVR---------GNHIMDDAFEGVKRGRIVNNQDLTIKGHDEIFVIGDCSAFIPEGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + +++ ++ P +PF + + G + LG +D
Sbjct: 314 PLPTTAQIAMQQGENVAQSIYNILHGEPTVPFNYVDRGTVCSLGSHDG 361
>gi|218439223|ref|YP_002377552.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7424]
gi|218171951|gb|ACK70684.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7424]
Length = 455
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/467 (24%), Positives = 194/467 (41%), Gaps = 93/467 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ I+GGGF GLYTA L+ D V L+D+ +F+P+LY++ +G +
Sbjct: 7 QKPRVVIVGGGFAGLYTAKALK------DAPVDVTLIDKRNFHLFQPLLYQVATGNISPA 60
Query: 138 EI-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I +P L + Q D V + P H ++L+ + YD L+
Sbjct: 61 DISSPLRLVLRHHKNTQVILDEVLDVDP-------------HTKQLILKGHEPISYDMLI 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G FA T+EDA + R++ +E E + + + +V
Sbjct: 108 VATGVSHFYFGNDHWQTFAPGLKTIEDALEIRRRIYMAFEAAEKETDPEIRQAWLTFVIV 167
Query: 251 GCGYSGVELAATVSERLEE--KGIVQAINVETT----------ICPTGTPGNREAALKVL 298
G G +GVELA ++E +G + I+ T I P P E ++K
Sbjct: 168 GGGPTGVELAGAIAEIAHSSLEGDFRQIDTTATQILLLEGMDRILPPYPP---ELSVK-- 222
Query: 299 SARKVQLVLGYFVRC---IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
A++ LG V+ + V E +V+Q E + NIAA
Sbjct: 223 -AQESLTKLGVTVQTKTLVTNVTEEMVTVRQEEQ--VKNIAAKT---------------- 263
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL-------PLNARGQAETDETLCVKGHP 408
+LW G K +++ ++ L+ G+ + L V GHP
Sbjct: 264 ---------ILWAAGVKA---------SKMGEVLAQRTGAKLDRAGRVMVEPDLSVVGHP 305
Query: 409 RIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
+F +GD + +PLP A VA QQ ++ + I P+ F + + G + ++
Sbjct: 306 DLFVIGDLANFSHQGDKPLPGVAPVAMQQGEYMAKLIKKRITKEPIEAFYYIDRGSLAVI 365
Query: 469 GRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G+N A V+ FV+ L G + A++ L +++L V V W
Sbjct: 366 GQNSAVVNLGFVK---LSGFLAWLIWVWAHIYYLIEFDNKLVVMVQW 409
>gi|315283482|ref|ZP_07871662.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria marthii FSL S4-120]
gi|313612873|gb|EFR86835.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria marthii FSL S4-120]
Length = 403
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 183/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ +T F +D V + + TV L++ + YD+L++
Sbjct: 59 LMYPLDKVVNDTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIG 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKQYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEVREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVQGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|423400220|ref|ZP_17377393.1| hypothetical protein ICW_00618 [Bacillus cereus BAG2X1-2]
gi|401655969|gb|EJS73494.1| hypothetical protein ICW_00618 [Bacillus cereus BAG2X1-2]
Length = 402
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK V + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARVICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|27262346|gb|AAN87454.1| NADH dehydrogenase [Heliobacillus mobilis]
Length = 432
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 182/418 (43%), Gaps = 83/418 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPRI +LG G+ G+ T RL++L+ D+ +++LV++ L+E+ +G D
Sbjct: 18 KPRIVVLGAGYAGILTTRRLQNLLSSDE--AEIVLVNKHNYHYLTTWLHEVAAGTGDDDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I + D++ V KD V + +H V+L G + YD+LV++
Sbjct: 76 ITIQIKDVIDTDRVHLIKDTVLEVQKEEH-------------RVILSHGEALIYDYLVVA 122
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----SELERRNFGKDSLIRVAVVGCGY 254
LG EP +PG + A ++ A ++ K+ ++ N ++ L + V G G+
Sbjct: 123 LGFEPATFGIPGIMKHALTIRSMNSARKIRHKIEALFADFADSNDEQEKLTFI-VGGAGF 181
Query: 255 SGVELAATVSERL----EEKGI----VQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+G+E AA ++ER+ E+ + VQ +NV EAA +L+ L
Sbjct: 182 TGIEFAAELAERIPVLCEQYAVDPRRVQVLNV-------------EAAPGILAGFDPDLA 228
Query: 307 LGYFVRCIRRVG-EFEASVK----QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
Y + + R+G EF S + P+ + A ++ E
Sbjct: 229 -DYSKQSLERLGVEFRLSTRIKSVDPQGVTLLTEAGEER-------------------IE 268
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALR 420
+ V+WT G + N+ + A RG+ E L + G+ +F LGD SA
Sbjct: 269 SATVIWTGGVQ--------GNSVVCGSAFEAQRGRIPAGEDLRIPGYDNVFVLGDCSAFL 320
Query: 421 D-SSGRPLPATAQVAFQQADFAGWNLWAAIND----RPLLPFRFQNLGEMMILGRNDA 473
D +GRP P TAQ+A Q+D N+ + + +PF G + LG +DA
Sbjct: 321 DKGTGRPYPPTAQLAILQSDVCAQNIVTLLRGGQELKTFVPFM---KGAVASLGAHDA 375
>gi|375086419|ref|ZP_09732830.1| hypothetical protein HMPREF9454_01441 [Megamonas funiformis YIT
11815]
gi|291533555|emb|CBL06668.1| NADH dehydrogenase, FAD-containing subunit [Megamonas hypermegale
ART12/1]
gi|374565194|gb|EHR36466.1| hypothetical protein HMPREF9454_01441 [Megamonas funiformis YIT
11815]
Length = 421
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 171/419 (40%), Gaps = 81/419 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P + ILG GFGG+ A L DK V +VD+ +F+P+LY++ + + E
Sbjct: 9 RPHVVILGAGFGGIKAAKLLA------DKDVDVTIVDKHNYHLFQPLLYQVSTSILSEDE 62
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ P A N + FF P++ + + +HG + YD+L++
Sbjct: 63 ISYPIRAFFQKNENIDFFMAEATGFDPANKI-----VKTSHGD---------ISYDYLII 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDAC-------RVDRKLSELERRNFGKDSLIRVAVV 250
+ GA + E ++P TL ++ R + S +E K +L+ + +V
Sbjct: 109 ATGATTNYFGMKSVEEHSYPMKTLRESTLLRNHLIRTFERASRVENDKDLKKALMTIMIV 168
Query: 251 GCGYSGVELAATVSE-----------RLEEKGI-VQAINVETTICPTGTPGNREAALKVL 298
G G +GVE A +SE L + ++ I + P R + VL
Sbjct: 169 GGGPTGVEEAGAISELVYKCMKKDYHNLNMNDVDIKLIEATDKLLPMMPEALRNNTVDVL 228
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
+KV + L VR D + + L+ G + +
Sbjct: 229 RGKKVDVRLNTQVR-------------------------DYDGEYITLKC-----GEKEE 258
Query: 359 IFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
V+W G K P++ + +R G+ ++T VKG P I+A+GDS
Sbjct: 259 KIRTRTVIWAAGVKAQPVVATLGAEVDRA--------GRVIVEKTTQVKGFPDIYAIGDS 310
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ + GRPLP A A++ A+ N+ AI F +++LG M +G DA +
Sbjct: 311 AHF-EQDGRPLPTIAPAAYEAAETTVKNIMHAIKGEEQETFVYKDLGSMATIGAGDAVM 368
>gi|320538448|ref|ZP_08038315.1| pyridine nucleotide-disulfide oxidoreductase [Treponema phagedenis
F0421]
gi|320144710|gb|EFW36459.1| pyridine nucleotide-disulfide oxidoreductase [Treponema phagedenis
F0421]
Length = 427
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 187/441 (42%), Gaps = 72/441 (16%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDK-KPQVLLVDQSERFVFKPMLYELLSGEV 134
+ +KPRI +LG G+ G+ T L QD + +++LVD+++ ++E+ +G+
Sbjct: 26 NMEKPRIVVLGAGYAGMRTVKCL-----QDRRLNMEIILVDKNDYHYEATCIHEVAAGDK 80
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
A +I+ + AD++ V F +D V + + +V+LE+ + YD+
Sbjct: 81 TAEQISYKIADVINPKSVTFIQDTVVSISANTK-------------SVVLENNEPLTYDY 127
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--GKDSLIRVAVVGC 252
LV++LG E + + G E L+ A R+ + L E R D+ + + V G
Sbjct: 128 LVVALGFESETFGIEGVKEHTLELVNLKTAERIRQHLEERFNRYVLTKDDNDLHIIVCGA 187
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARK 302
G++ +E + + + E + VQ VE + P + A+K L ++
Sbjct: 188 GFTSIEFVGALLDTIPEYSRQYDFPQERVQITCVEALPKLLPMFHKRLIDYAIKYLRSKN 247
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V ++L I +V E E K +G + A
Sbjct: 248 VTILLD---APISKVNENEVQYK---------------------------RGTRNDSLRA 277
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD- 421
+ ++WT G V + + L RG+ + L H IF LGD +A +
Sbjct: 278 NTIVWTTG-------VRGSSIIGNSGFLEKRGRVSITDFLTHPEHEEIFFLGDVAAFINM 330
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
++ RP P TAQ+A + A N+ I R L PF F++ G + +G N A F
Sbjct: 331 ATNRPFPTTAQIAIAMGESAAANIANKIRGRSLKPFIFRSKGSVCSIG-NTVAFGEVF-- 387
Query: 482 GVTLDGPIGHSARKLAYLIRL 502
G+ + G I + +K+ I L
Sbjct: 388 GINIKGYIASAMKKMIANISL 408
>gi|228942092|ref|ZP_04104633.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228975022|ref|ZP_04135582.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981613|ref|ZP_04141909.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis Bt407]
gi|410677313|ref|YP_006929684.1| NADH dehydrogenase-like protein YumB [Bacillus thuringiensis Bt407]
gi|228778098|gb|EEM26369.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis Bt407]
gi|228784727|gb|EEM32746.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228817608|gb|EEM63692.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|409176442|gb|AFV20747.1| NADH dehydrogenase-like protein YumB [Bacillus thuringiensis Bt407]
Length = 402
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + +E + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVNEYMHAPGYEEVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|86141966|ref|ZP_01060490.1| putative NADH dehydrogenase [Leeuwenhoekiella blandensis MED217]
gi|85831529|gb|EAQ49985.1| putative NADH dehydrogenase [Leeuwenhoekiella blandensis MED217]
Length = 451
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/453 (22%), Positives = 189/453 (41%), Gaps = 66/453 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K PR+ I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPRVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I F + FF+ L + + + T+ G+ V YD+
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFR-----LAEVEEIQPDSNTILTNKGS--------VSYDY 124
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR-KLSELERRNFG-----KDSLIRVA 248
LVL+ G + AE + + D+ + L LE+ +D+L
Sbjct: 125 LVLATGTTTNFFGMDSVAENSLGMKDIRDSLNIRHMMLQNLEQAAITCDDKERDALTNFV 184
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
+VG G +GVE+A ++E + I P P + + + + +LG
Sbjct: 185 IVGGGPAGVEMAGALAEFCK------------YILPKDYPEYPSSIMNIYLIEAIDELLG 232
Query: 309 YF-----VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ ++ + + V E A+ N ++ + K + A
Sbjct: 233 TMSDKASSKTLKYLEDLNVKVLLNE--AVSNYDGNEVTTK------------SGKTILAK 278
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDS 422
++WT G K P N + + + + +TD L V+G+ IFA+GD +AL
Sbjct: 279 NLIWTAGVKGQFP------NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALISKE 332
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
+ + P AQ A QQ + G ++ IN++ + PF++++ G + +G+ A +
Sbjct: 333 TPKGHPQVAQTAIQQGKYLGDSILNIINNKSIKPFKYKDKGSLATVGKRKAVAD---LGK 389
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + +L+ + +RL VG +W
Sbjct: 390 FKFAGYFAWLLWSVVHLMSISGFRNRLMVGFNW 422
>gi|423548201|ref|ZP_17524559.1| hypothetical protein IGO_04636 [Bacillus cereus HuB5-5]
gi|401176230|gb|EJQ83426.1| hypothetical protein IGO_04636 [Bacillus cereus HuB5-5]
Length = 402
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/412 (23%), Positives = 177/412 (42%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ +L +S L EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEKR------------IILKDSEL--EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|407643173|ref|YP_006806932.1| putative NADH dehydrogenase [Nocardia brasiliensis ATCC 700358]
gi|407306057|gb|AFT99957.1| putative NADH dehydrogenase [Nocardia brasiliensis ATCC 700358]
Length = 391
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 169/397 (42%), Gaps = 70/397 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILGGG+ G+ A RL + D + + LV+ S RF + ++++ +G+ E+A
Sbjct: 6 RIVILGGGYTGMVAAARLARRTRKQDVR--ITLVNPSARFTERLRMHQIAAGQ----ELA 59
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R AD+LA TGV+F + L P+ G VL++ + YD L+ +L
Sbjct: 60 DHRIADILAGTGVEFVQGWATSLDPAS-------------GHVLVDGTRTLPYDELIYAL 106
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G+ D+VPGAA+ A+ + A R ER N VAV G G +G+E
Sbjct: 107 GSSTDTDIVPGAADHAWTLNDPRAAHRF------AERLNVVAAQGGTVAVCGGGLTGIEA 160
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
AA ++E + T+ +G PG A+ AR Y R R+G
Sbjct: 161 AAEIAENHP--------GLRVTLISSGAPG----AMMSDKAR------AYLNRAFDRLGV 202
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHV 378
+ + + +L P A++ + ADL LWT G +
Sbjct: 203 V------------------REIGRAVTKLLPDAVELAGGTVVPADLTLWTTGVRVAP--- 241
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
+ + RG DETL HP I A+GD++A+R G+ + T Q A
Sbjct: 242 ---LAAAAGIATDERGLIVVDETLRSVSHPNIHAVGDAAAIRMPWGQ-IHGTCQSGIPTA 297
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ + + + PFRF + + LGR DA +
Sbjct: 298 AYTADAIARELRGKAPKPFRFGYFHQPVSLGRRDAII 334
>gi|423462263|ref|ZP_17439059.1| hypothetical protein IEI_05402 [Bacillus cereus BAG5X2-1]
gi|401133534|gb|EJQ41163.1| hypothetical protein IEI_05402 [Bacillus cereus BAG5X2-1]
Length = 402
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|295135234|ref|YP_003585910.1| NADH dehydrogenase [Zunongwangia profunda SM-A87]
gi|294983249|gb|ADF53714.1| putative NADH dehydrogenase [Zunongwangia profunda SM-A87]
Length = 451
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/453 (22%), Positives = 189/453 (41%), Gaps = 66/453 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K PR+ I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPRVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I F + FF+ L + + + T+ G+ V YD+
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFR-----LAEVEEIQPDSNTILTNKGS--------VSYDY 124
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR-KLSELERRNFG-----KDSLIRVA 248
LVL+ G + AE + + D+ + L LE+ +D+L
Sbjct: 125 LVLATGTTTNFFGMDSVAENSLRMKDIRDSLNIRHMMLQNLEQAAITCDDKERDALTNFV 184
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
+VG G +GVE+A ++E + I P P + + + + +LG
Sbjct: 185 IVGGGPAGVEMAGALAEFCK------------YILPKDYPEYPSSIMNIYLIEAIDELLG 232
Query: 309 YF-----VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ ++ + + V E A+ N ++ + K + A
Sbjct: 233 TMSDKASSKTLKYLEDLNVKVLLNE--AVSNYDGNEVTTK------------SGKTILAK 278
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDS 422
++WT G K P N + + + + +TD L V+G+ IFA+GD +AL
Sbjct: 279 NLIWTAGVKGQFP------NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALISKE 332
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
+ + P AQ A QQ + G ++ IN++ + PF++++ G + +G+ A +
Sbjct: 333 TPKGHPQVAQTAIQQGKYLGDSILNIINNKSIKPFKYKDKGSLATVGKRKAVAD---LGK 389
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + +L+ + +RL VG +W
Sbjct: 390 FKFAGYFAWLLWSVVHLMSISGFRNRLMVGFNW 422
>gi|452201392|ref|YP_007481473.1| NADH dehydrogenase [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|452106785|gb|AGG03725.1| NADH dehydrogenase [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 403
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTIVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + +E + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVNEYMHAPGYEEVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 359
>gi|319650399|ref|ZP_08004542.1| NADH dehydrogenase [Bacillus sp. 2_A_57_CT2]
gi|317397960|gb|EFV78655.1| NADH dehydrogenase [Bacillus sp. 2_A_57_CT2]
Length = 405
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 181/414 (43%), Gaps = 72/414 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP+I ILG G+GGL A RL+ V ++ +++LV++++ L+E +G +
Sbjct: 2 RKPKIVILGAGYGGLMVATRLQKSVGTNE--AEIVLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ D++ V+F + + + V+LESG I +YD+LV+
Sbjct: 60 RVRYDIKDVIDRNKVEFVQGTALEIKTEEK-------------KVILESGEI-DYDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
SLGAEP+ + G E AF + +A R R+ E + + KD + + V G
Sbjct: 106 SLGAEPETFGIKGLKEHAFSIVNV-NAARQIREHIEYQFATYNTDAEKKDERLTIVVGGA 164
Query: 253 GYSGV----ELAATVSERLEEKGI----VQAINVETT--ICPTGTPGNREAALKVLSARK 302
G++G+ ELA V E +E + V+ I VE + P P A+ L +
Sbjct: 165 GFTGIEFLGELANRVPELCKEYDVDYHKVKIICVEAAPMVLPGFDPELVNYAVSHLEKKG 224
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
VQ ++G ++ EA+ PE I K D E + +A
Sbjct: 225 VQFMIGTAIK--------EAT---PEG-----IIVGKGED-------------EVEEIKA 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALR 420
V+W G + N+ + + + A RG+ + L GH +F +GD S +
Sbjct: 256 ATVVWAAGVR--------GNSIIENSGIEAMRGRVKVQPDLRAPGHDNLFIIGDCSLIIN 307
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + N+ A I N L F G + LG +DA
Sbjct: 308 EEINRPYPPTAQIAMQQGEVCARNITALIRNKTELETFTPDIKGTVCSLGEHDA 361
>gi|17230456|ref|NP_487004.1| hypothetical protein all2964 [Nostoc sp. PCC 7120]
gi|17132058|dbj|BAB74663.1| all2964 [Nostoc sp. PCC 7120]
Length = 442
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/451 (24%), Positives = 189/451 (41%), Gaps = 58/451 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ R+ I+G GFGGL A L VLL+D+ F P+LY++ +G+++
Sbjct: 3 RNRRVVIVGAGFGGLQAAQSLA------HSGADVLLIDRHNYHTFVPLLYQVATGQIEPE 56
Query: 138 EIAPRFADLLA----NTGVQFFKDRVK-LLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
IA +L N Q K +V+ L+ + + +G + T G + +Y
Sbjct: 57 YIAYPIRTILRRFSFNYRRQHHKPQVQFLMAEVEQIDFSGQIVKTAKGAI--------DY 108
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL------ERRNFGKDSLIR 246
D+LVL+ G+ + V GA E+AFP +LE+A + + E + L+
Sbjct: 109 DFLVLATGSRTQFWGVNGAEEYAFPMRSLEEAVALRNHIFSCFEQAIQESDAAKRQQLLT 168
Query: 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+VG G +GVE+A + E L +G ++ CPT G E + ++ + LV
Sbjct: 169 FTIVGGGATGVEMAGALVEML--RGCLR------RDCPTIDFG--EVKIILVQSGDRLLV 218
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE-SQIFEADLV 365
EF + + + + + +L L+ ++I V
Sbjct: 219 ------------EFPKKLGNYTYKKLHQLGVEVYLQTRVSQLTEGFVHLDNAEIIPCASV 266
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+WT G + LP V +LP+ +G+ TL V HP ++A+GD + + + +G+
Sbjct: 267 IWTAGLEANLPGVS------EELPVAHKGKIVVHPTLQVLEHPNVYAIGDLAYV-EKNGK 319
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
L A A QQ N+ I + PF + N G + I+G +
Sbjct: 320 SLSGVAPEALQQGVAVARNIQQQIRGKSPKPFSYFNKGRLAIIGCYSGVGK---IGAFAF 376
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G + +L+ LP RL V ++WL
Sbjct: 377 TGFLAWLMWLGVHLVYLPGYRSRLLVLLTWL 407
>gi|47566961|ref|ZP_00237678.1| NADH dehydrogenase [Bacillus cereus G9241]
gi|47556279|gb|EAL14613.1| NADH dehydrogenase [Bacillus cereus G9241]
Length = 432
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/412 (23%), Positives = 177/412 (42%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 32 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 89
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ +L +S L EYD+LV+
Sbjct: 90 KICLDIQDVIDTNKVNFVQDTVVEIKAAEKR------------IILKDSEL--EYDYLVI 135
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 136 GLGFESETFGITGLKEHAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 194
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 195 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 254
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 255 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 284
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 285 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 336
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 337 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 388
>gi|319788350|ref|YP_004147825.1| NADH dehydrogenase (ubiquinone) [Pseudoxanthomonas suwonensis 11-1]
gi|317466862|gb|ADV28594.1| NADH dehydrogenase (ubiquinone) [Pseudoxanthomonas suwonensis 11-1]
Length = 430
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 107/450 (23%), Positives = 185/450 (41%), Gaps = 63/450 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD+ P + ++GGGF GL+ +L W + + LVD+S +F+P+LY++ + +
Sbjct: 6 PDR--PHLVVIGGGFAGLWAT---RALAWSPLR---ITLVDRSNHHLFQPLLYQVATAGL 57
Query: 135 DAWEIAPRFADLLA---NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
A +IA +L N G++ + V+ + P T L G +
Sbjct: 58 SAPDIAAPLRHILRRQRNVGIRLGE--VEAIDPQAR-------------TATLADGKALH 102
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFGKD-----SLI 245
YD+L+L+ GA A+ A +L+DA + RKL ER D + +
Sbjct: 103 YDYLLLATGATHAYFGNEQWAQHAPGLKSLDDALELRRKLLLAFERAEACDDPAERAAWL 162
Query: 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
A+VG G +GVELA T++E Q N+ +V+L
Sbjct: 163 EFAIVGGGPTGVELAGTLAEIARHTLRDQFRNINPATA------------------RVRL 204
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
+ R + F + + + + + ++ + ++ L + +
Sbjct: 205 IEA----GPRVLASFPEDLSEKARRQLEKLGVEVSTGVPVTDINAGGYRLGDTYVHSRTI 260
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G P R +PL+ G+ + L V GHP IF GD +A+ + G
Sbjct: 261 VWAAGV------AASPLARSLGVPLDRAGRVPVEPDLSVPGHPEIFVGGDLAAVEQADGS 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
P+P A A Q + A + P PFR+++ G + +GR A V + G+ L
Sbjct: 315 PVPGVAPAAKQMGRHVARAIQARLQGAPARPFRYRDFGNLATIGRMAAVVD---IHGIRL 371
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + A++ L +RL V ++W
Sbjct: 372 SGVLAWWFWLAAHVFFLIGFRNRLVVLLNW 401
>gi|82703122|ref|YP_412688.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nitrosospira multiformis ATCC 25196]
gi|82411187|gb|ABB75296.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nitrosospira multiformis ATCC 25196]
Length = 462
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 115/451 (25%), Positives = 178/451 (39%), Gaps = 66/451 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I I+GGGF GL L ++ V LVD + +F P+LY+ +G +D
Sbjct: 37 KTKIAIIGGGFAGLNLVKHLAG-----KEEFDVTLVDMNNYHLFPPLLYQAATGFLDVSN 91
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA F +FF D+V + L P G VLL +G + YD LVL+
Sbjct: 92 IAYPFR--------KFFHDKVNVHFRLGKLQKVMP----EGNKVLLSTGELA-YDCLVLA 138
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVD----RKLSE--LERRNFGKDSLIRVAVVGC 252
G EP + A P T +DA + +K+ E +E + L V + G
Sbjct: 139 TGTEPNYFGIENIRRAALPMKTADDAIEIRNYMLQKMEEVTIEVDEMRRKKLFSVVIAGG 198
Query: 253 GYSGVELAATVSE---RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G +GVE+A ++E R+ + + ++ I + A+ V S +
Sbjct: 199 GPTGVEIAGMLAEMRKRILHRDYPELTGLQPRIHLVDSASALLGAMSVHSQKYT------ 252
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+E +K + D +D I + + E ++LWT
Sbjct: 253 ----------YEVLLKMGVEIHLNTQVKDYINDTVIFS--------DGKTLETQILLWTA 294
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSALRDSSGRP 426
G + LP G+ +E V G I+A+GD+ L P
Sbjct: 295 GVTGKI---------FEGLPHECYGRGNRLLVNEYNKVSGTRDIYAIGDTCLLTSDRNFP 345
Query: 427 --LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
P AQVA QQ NL A I ++PL PF + + G + I+GRN AV+ +
Sbjct: 346 QGHPQLAQVALQQGRNLAANLVAVIRNQPLTPFAYNDKGSLAIIGRNK-AVADFPKPALH 404
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
L+G + +L L T +R +W
Sbjct: 405 LEGFMAWGIWLFVHLFSLVTYRNRFMTLANW 435
>gi|229175620|ref|ZP_04303129.1| S-adenosyl-methyltransferase MraW [Bacillus cereus MM3]
gi|228607878|gb|EEK65191.1| S-adenosyl-methyltransferase MraW [Bacillus cereus MM3]
Length = 402
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|229141645|ref|ZP_04270176.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-ST26]
gi|423355392|ref|ZP_17333016.1| hypothetical protein IAU_03465 [Bacillus cereus IS075]
gi|423571819|ref|ZP_17548057.1| hypothetical protein II7_05033 [Bacillus cereus MSX-A12]
gi|228641843|gb|EEK98143.1| S-adenosyl-methyltransferase MraW [Bacillus cereus BDRD-ST26]
gi|401083855|gb|EJP92108.1| hypothetical protein IAU_03465 [Bacillus cereus IS075]
gi|401199414|gb|EJR06316.1| hypothetical protein II7_05033 [Bacillus cereus MSX-A12]
Length = 402
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 177/412 (42%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTTVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|423479074|ref|ZP_17455789.1| hypothetical protein IEO_04532 [Bacillus cereus BAG6X1-1]
gi|402426225|gb|EJV58357.1| hypothetical protein IEO_04532 [Bacillus cereus BAG6X1-1]
Length = 402
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYATEQRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q+ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQEGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|217962393|ref|YP_002340965.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
AH187]
gi|375286917|ref|YP_005107356.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
NC7401]
gi|217067049|gb|ACJ81299.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH187]
gi|358355444|dbj|BAL20616.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
NC7401]
Length = 403
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 177/412 (42%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 3 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 61 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + +D L+ V G G+
Sbjct: 107 GLGFESETFGITGLKEHAFSIANI-NATREIREHMEASFAKYADEKRDELVTTVVGGAGF 165
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 166 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 225
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 226 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 255
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 256 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 307
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 359
>gi|254444543|ref|ZP_05058019.1| cyclic nucleotide-binding domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198258851|gb|EDY83159.1| cyclic nucleotide-binding domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 673
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 188/448 (41%), Gaps = 60/448 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILGGGF G+Y A L + + ++P + L+ + VF+PML EV ++P
Sbjct: 11 VAILGGGFSGVYAARSLAKKLRKAGREPSIALISEENHMVFQPML-----PEVAGATLSP 65
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIV-----EYDWL 195
R + ++ LCP H+ ++ L +G V + L
Sbjct: 66 RHV-----------VNPIRNLCPGAHVFKAQATKLDFKQRSLTLSAGDFVGSIELRFRQL 114
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIR-----VAV 249
L LGA+ L +PG E A + DA R+ +S E N D IR +
Sbjct: 115 ALCLGAKIDLSRIPGMQEHALIMQNVGDAMRLRAHFISRFEEANLAYDPEIRRRLLTFVI 174
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
VG GYSGVE A Q I++ I + E VL K L+
Sbjct: 175 VGGGYSGVETAG------------QLIDLGRAINKHYKNVDWEDIRLVLVHSKDHLLPTL 222
Query: 310 FVRCIRRVGEFEAS--VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
R +G++ A K+ + A ++K L+ G E + + V+
Sbjct: 223 H----RNLGDYTAEKLSKRGVEMILTRRAKAVTANKIYLD-----DGTE---IDTNTVIC 270
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
TVG+ P P + + + + L+ RG+ + + L G ++A GD +++ G
Sbjct: 271 TVGNAP-HPLILGLDG-IQGVELD-RGRLKVGQDLAAPGIDWLWAAGDCASIPQDDGNTC 327
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
P TAQ A ++ G NL A I + PFRF+ +GE+ +G A ++G+ G
Sbjct: 328 PPTAQFAMREGLLLGKNLAARIQNSSTKPFRFKAIGELASIGHLSAVAE---IKGMRFSG 384
Query: 488 PIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ YL++LP+ E +++V V W
Sbjct: 385 FFAWWMWRSIYLMKLPSLERKIRVMVDW 412
>gi|209523818|ref|ZP_03272371.1| DoxX family protein [Arthrospira maxima CS-328]
gi|209495850|gb|EDZ96152.1| DoxX family protein [Arthrospira maxima CS-328]
Length = 569
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 115/446 (25%), Positives = 190/446 (42%), Gaps = 62/446 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I P + V+F + V D + T G + YD LV
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNV------DRINYEYQWVDTDHGQI--------RYDILV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------FGKDSLIRVAVV 250
++ G+ P+LD +PGAA+++ +TLEDA V + + RR + L+ +V
Sbjct: 104 IATGSRPQLDHIPGAAKYSLTLNTLEDAAVVRHHIVDRIRRAILEPEPIDRARLLTFVIV 163
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA + ++L +A+ + P + ++L G+
Sbjct: 164 GGGPTGVELAGGLIDQL------RALLGWRRLFPLAKVILVHSGDRLLP----NFSQGFS 213
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
C R + + SV NS L+ AI A ++WT G
Sbjct: 214 AYCERHLRQLGVSVWLNRR------VLRVNSQGVELDTGEAI--------AAPTIIWTAG 259
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ V+ P ++L + A+G+ + L V HP+++A+GD + LR G L
Sbjct: 260 VQ-----VDHP-SQLDQISTAAKGKIIVEPILRVPDHPKVYAIGDVAFLRPDHG--LSGI 311
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A A QQ + N+ + PFR+ + G+ I+ R +S + + G +G
Sbjct: 312 APEAIQQGEAVATNILHQLRGTSPQPFRYIDKGKAAIISRYAGILS---CDRLNNTGFLG 368
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWL 516
+ ++ LP +RL VG +W
Sbjct: 369 WLTWLVIHMCYLPGWRNRLTVGYNWF 394
>gi|256426146|ref|YP_003126799.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chitinophaga pinensis DSM 2588]
gi|256041054|gb|ACU64598.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chitinophaga pinensis DSM 2588]
Length = 447
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 171/420 (40%), Gaps = 72/420 (17%)
Query: 71 TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELL 130
T P KPR+ I+G GFGGL TA L D K Q++L D+ F+P+LY++
Sbjct: 8 TLNIPPTTKPRVVIVGAGFGGLNTAQSLP------DDKFQIVLFDKHNYHTFQPLLYQVA 61
Query: 131 SGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
S + A IA +L +T KD H + ++ G + S +
Sbjct: 62 SAALQADSIAGPLRNLFHDT-----KDF--------HFRMLRVLSIDPGTNTINTSAGPL 108
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-ERRNFG-----KDSL 244
+YD+L++S GA +A P T+ DA + +L +L E + D +
Sbjct: 109 QYDYLIISTGARTNYFGNENMQRYALPLKTIPDALNMRSQLMQLFEWASLNGNPAISDYM 168
Query: 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+ V +VG G +GVE+A +SE + + P P + +K+ +
Sbjct: 169 LNVVLVGAGPTGVEMAGALSE------------LRKNVLPKDYPALDFSKMKIYLLDGLD 216
Query: 305 LVLGYF-----VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
VL R + + + +K + I D + + L+ IK
Sbjct: 217 RVLPPMHPKSSARAQKYLEKMGVIIK------LNTIVQDYDGETITLKTGEQIKSF---- 266
Query: 360 FEADLVLWTVG----SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
LV+W+ G + P +P RG+ TD V G P IFA+GD
Sbjct: 267 ----LVVWSAGVTGETFPGIPK-----------EWTERGRLLTDPNCRVIGSPNIFAIGD 311
Query: 416 SSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
+ ++ + + P AQ A Q + G NL+A + PF++ + G + +GR A
Sbjct: 312 IALMKLEDYPKGHPGVAQPAIQMGKYIGKNLYAIHRSDKVKPFKYFDKGSLATVGRGKAV 371
>gi|398306219|ref|ZP_10509805.1| NAD-disulfide oxidoreductase [Bacillus vallismortis DV1-F-3]
Length = 404
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 176/412 (42%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD++V+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIEEK-------------KVVLANGEL-QYDYVVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYHTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R+ E + +V+ + VE T+ P P + A+ L V
Sbjct: 166 FTGIEFLGELAARIPELCKEYDIDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYLEENGV 225
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 226 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 256 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 309 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEQFKPDIKGTVASLGEHNA 360
>gi|228936227|ref|ZP_04099027.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228823474|gb|EEM69306.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 402
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 178/412 (43%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDDEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E+AF + + +A R R+ E + +D L+ + V G G+
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + T P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|421730406|ref|ZP_16169535.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|407076372|gb|EKE49356.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
M27]
Length = 404
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 174/411 (42%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 61 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + R + EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R E + +V+ + VE T+ P P + A++ L ++ V
Sbjct: 166 FTGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGV 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ R G + K + E + ++
Sbjct: 226 EFKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQ 256
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 257 TVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEE 309
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 310 TERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 360
>gi|359150348|ref|ZP_09183186.1| NADH dehydrogenase, FAD-containing subunit [Streptomyces sp. S4]
Length = 428
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 164/401 (40%), Gaps = 60/401 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA- 140
+ ++GGGF G+ A +L + LLVD F+P+LY+L + ++ E+A
Sbjct: 7 VIVVGGGFAGIEAATKLGR------AGVRTLLVDVHGYHQFQPLLYQLATAQIGVSELAR 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD-WLVLSL 199
P + V+ RV + P T+ L G + E D L+++
Sbjct: 61 PLRSIFRRQPSVRVLTARVAAVDPGRR-------------TITLTDGTVYEADDALIVAC 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL--ERRNFGKDSLIRVAVVGCGYSGV 257
GAE PGA E A+P + DA R+ KL L + + + VAVVG G +GV
Sbjct: 108 GAEANFFDTPGARENAYPLYSATDATRLGSKLVALLDQADKDTEQKSMNVAVVGAGPTGV 167
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
E A +++ AIN + P G+ V V LG F + +
Sbjct: 168 ETAGAIAD---------AINY---VVPKLFAGDLAKRCSVALVDMVDRTLGGFSKKSQAY 215
Query: 318 GE---FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK-- 372
E V+ A+ + D + + +ADLV+W G K
Sbjct: 216 AASRLVERGVRLKLGSAVTEVRED------------GLSFADGATMDADLVIWAGGLKAG 263
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
PLL R +P G+ + + L V G+ ++ LGD++ + D LP
Sbjct: 264 PLL--------RESGMPQGRGGRIDVAKDLTVPGYEGVYVLGDAANITDDRDERLPQLGS 315
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
VA Q +A N+ A RP PF +++ G M ++GR A
Sbjct: 316 VAKQSGGWAARNILAQRAGRPTEPFGYKDRGYMAMIGRGSA 356
>gi|308174897|ref|YP_003921602.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens DSM 7]
gi|384160763|ref|YP_005542836.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens TA208]
gi|384165658|ref|YP_005547037.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens LL3]
gi|307607761|emb|CBI44132.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
DSM 7]
gi|328554851|gb|AEB25343.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens TA208]
gi|328913213|gb|AEB64809.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
LL3]
Length = 406
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 174/411 (42%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGTND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + R + EL+ + ++ R + V G G
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 167
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R E + +V+ + VE T+ P P + A++ L ++ V
Sbjct: 168 FTGIEFLGELANRKPELCRNYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGV 227
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ R G + K + E + ++
Sbjct: 228 EFKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQ 258
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 259 TVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFINEE 311
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 312 TERPYPPTAQIAMQQGETVAKNLGRLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|384266734|ref|YP_005422441.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|394992610|ref|ZP_10385385.1| YumB [Bacillus sp. 916]
gi|380500087|emb|CCG51125.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|393806647|gb|EJD67991.1| YumB [Bacillus sp. 916]
Length = 406
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 174/411 (42%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + R + EL+ + ++ R + V G G
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 167
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R E + +V+ + VE T+ P P + A++ L ++ V
Sbjct: 168 FTGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGV 227
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ R G + K + E + ++
Sbjct: 228 EFKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQ 258
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 259 TVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEE 311
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 312 TERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|154687316|ref|YP_001422477.1| hypothetical protein RBAM_029150 [Bacillus amyloliquefaciens FZB42]
gi|375363633|ref|YP_005131672.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|154353167|gb|ABS75246.1| YumB [Bacillus amyloliquefaciens FZB42]
gi|371569627|emb|CCF06477.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 406
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 174/411 (42%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + R + EL+ + ++ R + V G G
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 167
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R E + +V+ + VE T+ P P + A++ L ++ V
Sbjct: 168 FTGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGV 227
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ R G + K + E + ++
Sbjct: 228 EFKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQ 258
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 259 TVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEE 311
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 312 TERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|21673208|ref|NP_661273.1| NADH dehydrogenase [Chlorobium tepidum TLS]
gi|21646290|gb|AAM71615.1| NADH dehydrogenase [Chlorobium tepidum TLS]
Length = 430
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 112/445 (25%), Positives = 178/445 (40%), Gaps = 59/445 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K ++ I+GGGF GL TA L + K +V L+D+ +F+P+LY++ + +
Sbjct: 2 KKKVVIVGGGFTGLNTARIL-----SNRKDVEVTLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LA V FK V C D + T G + EYD+LVL
Sbjct: 57 IATPLRNMLAGYDNVTVFKGNV---CNVD---LEQKKVKTDFGDI--------EYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRNFGKD--SLIRVAVVG 251
+ GA+ E A L A + R++ E ER N K+ + +VG
Sbjct: 103 ACGAQHHYFGKNDWEEHAPGLKNLAQASEIRRRVMEAYEAAERTNDMKERKKQLTFVIVG 162
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++ E +R K +L + V
Sbjct: 163 GGPTGVELAGSIGEM-----------------------SRYTLSKFYRHIDPKLTRIFIV 199
Query: 312 RCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
R+ G F + + + + + + ++ + + EA VLW G
Sbjct: 200 EAAERILGTFSPELSSKATRELEKLGVQVWTSSMVSDVDADGVQIGRERIEAATVLWAAG 259
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
K E N + R E D L + GHP +F GD + +G LP
Sbjct: 260 VKA----SEIGQNMGVQTDRSGRIMVEAD--LSLPGHPEVFVGGDQACYTLENGSTLPGM 313
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A VA Q+ G + + +P PF++++ G+M +GRN A V + + DG I
Sbjct: 314 APVAMQEGKAIGRMILDDLKGKPRKPFKYRDKGQMATIGRNRAIVE---IGNLKFDGAIA 370
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSW 515
L ++ L T +HR+ V + W
Sbjct: 371 WFTWLLVHIYYLSTFKHRVFVLMQW 395
>gi|116873753|ref|YP_850534.1| pyridine nucleotide-disulfide oxidoreductase [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742631|emb|CAK21755.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 403
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 183/407 (44%), Gaps = 63/407 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDH---LGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ ++ T F +D V + + LG NG ++ YD+L
Sbjct: 59 LMYPLDKVVNTTKTTFIQDTVVKINKDEKTVTLGANGNIS----------------YDYL 102
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCG 253
+++LG+E + + G E+AF +++E ++ + + + +D L+ + V G G
Sbjct: 103 LIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAG 162
Query: 254 YSGVELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGY 309
++G+E ++ R+ E +V+ +V C EAA KVL +LV Y
Sbjct: 163 FTGIEFLGELTNRIPE--LVKEYDVPREKVRIYC-------MEAAPKVLPQFDAKLV-DY 212
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
V + G E V +P A + S+ + E++ A ++W
Sbjct: 213 GVGVLEDRG-VEFHVGKPVKEATADGVKYAESENEVREIKAAT------------IIWAA 259
Query: 370 GSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPL 427
G + N+ + A RG+ + + L V G+ I +GD S + + ++ RP
Sbjct: 260 GVR--------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPF 311
Query: 428 PATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
P TAQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 312 PPTAQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|167629611|ref|YP_001680110.1| pyridine nucleotide-disulfide oxidoreductase [Heliobacterium
modesticaldum Ice1]
gi|167592351|gb|ABZ84099.1| pyridine nucleotide-disulphide oxidoreductase, putative
[Heliobacterium modesticaldum Ice1]
Length = 418
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 183/421 (43%), Gaps = 81/421 (19%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ KKPRI ILG G+ G+ TA RL+ L+ D+ +++LV++ L++ +G V+
Sbjct: 2 ETKKPRIVILGAGYAGILTARRLQKLLRHDE--AEIVLVNKHSYHYLTTWLHKAAAGTVE 59
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
I D++ + ++F KD V + + V+L G + YD+L
Sbjct: 60 DERITIAIKDVIDSRRIRFIKDTVTEVETTTQ-------------RVMLCHGEPLAYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVV- 250
VL+LG E +PG E A ++ A + V+ + +E ++ G+D ++ V
Sbjct: 107 VLALGFERADFGIPGIKEHALAICSMNSARQIRLTVEARFAEFAKQK-GRDGQEKLTFVV 165
Query: 251 -GCGYSGVELAATVSERL----EEKGI----VQAINVETTICPTG--TPGNREAALKVLS 299
G G++G+E AA ++ER+ + GI VQ INVE G P E A L
Sbjct: 166 GGAGFTGIEFAAELAERIPALCRQHGIDRQRVQVINVEGAPALLGGFAPALAEYAKASLE 225
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
VQ L ++ + R G + + ++ + PA
Sbjct: 226 NMGVQFRLSTRIQSVDRDG--------------VTLLTEAGEER----ITPAT------- 260
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRL--HDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
V+WT G + NR+ ++ RG+ ++ L GH +F LGD S
Sbjct: 261 -----VIWTGGVQ---------GNRVVCNEDFAAVRGRIAAEKDLRAPGHDNVFVLGDCS 306
Query: 418 ALRDS-SGRPLPATAQVAFQQADFAGWNLWAAIND----RPLLPFRFQNLGEMMILGRND 472
A+ D +GRP P TAQ+A Q+ NL + + +PF G + LG +D
Sbjct: 307 AVIDKRTGRPFPPTAQLAILQSAVCAENLATLVRGGSDLKEFVPF---IKGAVASLGSHD 363
Query: 473 A 473
A
Sbjct: 364 A 364
>gi|456392310|gb|EMF57653.1| hypothetical protein SBD_0325 [Streptomyces bottropensis ATCC
25435]
Length = 408
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 172/412 (41%), Gaps = 70/412 (16%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
E+ ++ + K I +LG G+ G+++A+RL + K + LV+ S RFV +
Sbjct: 7 EAGARPWETEMSKGHHIVVLGAGYTGMFSAIRLARRTRRAGVK--ITLVNPSSRFVERLR 64
Query: 126 LYELLSGEVDAWEIAP-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL 184
++++ +G+ E+A R DLLA TGV F + V + P + L
Sbjct: 65 MHQIAAGQ----ELAEHRIPDLLAGTGVSFVQGTVTAIAPEAR-------------RITL 107
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSL 244
+ + YD LV +LG+ VPG AF + E A R +L+E+ S
Sbjct: 108 DGAETLGYDTLVYALGSSTDTGTVPGVDTHAFTLNNPEIAGRFAARLTEV------AASA 161
Query: 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
V V G G +G+E A ++E + T+ PG A AR
Sbjct: 162 GTVTVCGGGLTGIEAATEIAE--------SHPGLHVTLISLDEPGGMMGA----KARA-- 207
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEAD 363
Y + R+G E+GA + ++ P GL + ++ +D
Sbjct: 208 ----YLYSALDRLG------VTLETGA------------RVTKVLPDAVGLDDGRLVRSD 245
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
LWT G K +P + + + RG D TL HP I A+GD++A+R +
Sbjct: 246 ACLWTTGVK--VPALAADAG----IATDDRGLVLVDATLRSVSHPEIHAIGDAAAVRLAW 299
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
G+ L T Q A + + + R + PFRF + + LGR DA +
Sbjct: 300 GQ-LHGTCQSGLPTAQYTADTIARLVRGRAVKPFRFGYFHQPVSLGRRDAVI 350
>gi|289435657|ref|YP_003465529.1| pyridine nucleotide-disulfide oxidoreductase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|422419955|ref|ZP_16496910.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL N1-067]
gi|422423102|ref|ZP_16500055.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL S4-171]
gi|289171901|emb|CBH28447.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632114|gb|EFR99204.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL N1-067]
gi|313636509|gb|EFS02244.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL S4-171]
Length = 403
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 182/404 (45%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ + F +D V + + TV L + + YD+L+++
Sbjct: 59 LMYPLEKVVNESKTTFIQDTVVKINKDEK-------------TVTLNANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKEYDVPREKVRIFC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ I E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEIREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANERPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAINLAKLVKGETDLEDFVYHEKGTVCSLGDNDA 358
>gi|431798495|ref|YP_007225399.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
gi|430789260|gb|AGA79389.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
Length = 451
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/455 (23%), Positives = 182/455 (40%), Gaps = 70/455 (15%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K P + I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPSVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ I F + FF+ V + P + T+L G V YD
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFRLAEVVEIQPDSN-------------TILTNKGS-VSYD 123
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR-KLSELER-----RNFGKDSLIRV 247
+LVL+ G + AE + + D+ + L LE+ N +D+L
Sbjct: 124 YLVLATGTTTNFFGMDSVAENSLGMKDIRDSLNIRHMMLQNLEQAAITCDNKERDALTNF 183
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
+VG G +GVE+A ++E + I P P + + +
Sbjct: 184 VIVGGGPAGVEMAGALAEFCK------------YILPKDYPEYPSSIMNIY--------- 222
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL- 366
I + E +++ S D N + E G E +L
Sbjct: 223 -----LIEAIDELLSTMSDKASSKTLKYLEDLNVKVLLNEAVSNYDGKEVTTISGKTILA 277
Query: 367 ----WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
WT G K P N + + + + +TD L V+G+ IFA+GD +AL S
Sbjct: 278 KNLIWTAGVKGQFP------NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALI-S 330
Query: 423 SGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
RP P AQ A QQ + G ++ IN++P PF +++ G + +G+ A +
Sbjct: 331 EERPKGHPQVAQAAIQQGKYLGNSILNLINNKPTQPFEYKDKGSLATVGKRKAVAD---L 387
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + +L+ + +RL VG +W
Sbjct: 388 GKFKFAGYFAWLLWSVVHLMSISGFRNRLMVGFNW 422
>gi|440697249|ref|ZP_20879679.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
gi|440280464|gb|ELP68195.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
Length = 464
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 201/453 (44%), Gaps = 58/453 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L Q K + L++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRILIVGAGFAGYQTARTLARLTRQ---KADITLLNPTDHFLYLPLLPQVAAGVLEPRR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKL-LCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ L +V+L L +D G++ ESG + YD LVL
Sbjct: 60 VTVSLPGTL---------RKVRLVLGEADADGIDLDARTVRYTDPEGESGTL-GYDRLVL 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA-----VVG 251
++G+ KL VPG AE A F L +A + D ++E D R A VVG
Sbjct: 110 AVGSVNKLLPVPGVAENAHGFRGLPEALYLRDHVTRQVELAAAADDPKSRAARCTFVVVG 169
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
GY+G E+AA +L +V+ V + P L+L
Sbjct: 170 AGYTGTEVAA--QGQLLTDALVRKQPVREGMRPR------------------WLLLDTAP 209
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVG 370
R + ++ E + + + D ++ + E PA L + + E+ ++W VG
Sbjct: 210 RVLPQLDE---KLSRTADRVLRQRGIDVRTETSVKEATPAGVLLSDGEFVESRTLVWCVG 266
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLP 428
+P P VE L RG+ D L V GHP +FA GD++A+ D G
Sbjct: 267 VRPD-PLVESIGQPLE------RGRLIVDPFLQVPGHPEVFACGDAAAVPDLNKPGEFTG 319
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
TAQ A++Q A N+ A++ +R ++LG ++ LG AA +P GV+L GP
Sbjct: 320 MTAQHAWRQGKVAARNVAASLGVGSRTAYRHRDLGFVVDLGGVKAAANPL---GVSLSGP 376
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
+ + + +L +P + R++V WL + +
Sbjct: 377 VAGAVARGYHLAAMPGN--RVRVAADWLLDAVL 407
>gi|429506480|ref|YP_007187664.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429488070|gb|AFZ91994.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 404
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 174/411 (42%), Gaps = 69/411 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 61 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + R + EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R E + +V+ + VE T+ P P + A++ L ++ +
Sbjct: 166 FTGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGI 225
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ R G + K + E + ++
Sbjct: 226 EFKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQ 256
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 257 TVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEE 309
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 310 TERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 360
>gi|419821929|ref|ZP_14345517.1| putative NAD-disulfide oxidoreductase [Bacillus atrophaeus C89]
gi|388473936|gb|EIM10671.1| putative NAD-disulfide oxidoreductase [Bacillus atrophaeus C89]
Length = 405
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 174/413 (42%), Gaps = 72/413 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKQVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L G + YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIHIEER-------------KVVLAGGEL-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R R+ EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRQLREHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R+ E + +V+ + VE T+ P P + A+ L + +
Sbjct: 166 FTGIEFLGELANRVPELCKEYDIDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYLEGKGI 225
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PN D+ E + ++
Sbjct: 226 EFKIGTAVQECT------------------PNGVTVGKKDE------------EPEQIQS 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 256 QTVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNTDLRAPGHDNVFILGDSSLFINE 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + N+ I L F+ G + LG +DA
Sbjct: 309 ETDRPYPPTAQIAMQQGETVAKNIGRLIKGGGQLEEFKPDIKGTVASLGEHDA 361
>gi|311069706|ref|YP_003974629.1| NAD-disulfide oxidoreductase [Bacillus atrophaeus 1942]
gi|310870223|gb|ADP33698.1| putative NAD-disulfide oxidoreductase [Bacillus atrophaeus 1942]
Length = 407
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 174/413 (42%), Gaps = 72/413 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 5 KPKIVILGAGYGGLMTVTRLTKQVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L G + YD+LV+
Sbjct: 63 CRYQIKDVINQSRVNFVQDTVKAIHIEER-------------KVVLAGGEL-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R R+ EL+ + ++ R + V G G
Sbjct: 109 LGAVPETFGIKGLKEYAFPIANI-NTSRQLREHIELQFATYNTEAEKRPDRLTIVVGGAG 167
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E ++ R+ E + +V+ + VE T+ P P + A+ L + +
Sbjct: 168 FTGIEFLGELANRVPELCKEYDIDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYLEGKGI 227
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PN D+ E + ++
Sbjct: 228 EFKIGTAVQECT------------------PNGVTVGKKDE------------EPEQIQS 257
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 258 QTVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNTDLRAPGHDNVFILGDSSLFINE 310
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + N+ I L F+ G + LG +DA
Sbjct: 311 ETDRPYPPTAQIAMQQGETVAKNIGRLIKGGGQLEEFKPDIKGTVASLGEHDA 363
>gi|441150784|ref|ZP_20965630.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440619129|gb|ELQ82183.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 465
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 118/472 (25%), Positives = 200/472 (42%), Gaps = 95/472 (20%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PR+ I+G GF G A +L + +++LV+ ++ F++ P+L E+ +G ++
Sbjct: 9 RRPRVVIVGAGFAGYECA---RTLAKKARGAAEIVLVNPNDYFLYLPLLPEVSAGILEPR 65
Query: 138 EIAPRFADLLANT--------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
++ L GV RV+ P G G
Sbjct: 66 RVSVSLTGTLPGVRLVLGQVGGVDLKGRRVEYTDPEGRTGSLG----------------- 108
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA 248
YD LVL++G+ KL +PG AE A F + +A + D ++E +D R
Sbjct: 109 --YDRLVLTVGSVNKLLPIPGVAEHAHGFRGMPEALYLRDHMTRQIELAGAAEDPAERAV 166
Query: 249 -----VVGCGYSGVELAA---TVSERLEE-----KGIVQA----INVETTICPTGTPGNR 291
VVG GY+G E+AA T + L +G Q +++ + P
Sbjct: 167 RTTFVVVGAGYTGTEVAAHGVTFTRSLARHNAGLRGEPQPRWILLDLADRVLPELDERLS 226
Query: 292 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 351
A +VL+ R V++ + SVK+ SD +L+
Sbjct: 227 RTAHRVLTKRGVEI-------------RTKTSVKE------------ATSDGVLLD---- 257
Query: 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 411
+ + ++W VG +P +P L LP RG+ DE L V GHP +
Sbjct: 258 ----DGTSVDTRSLIWCVGVRP-----DPLVESL-GLP-TERGRLCVDEFLTVPGHPEVL 306
Query: 412 ALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
A GD++A+ D + G+ P TAQ A +Q A N+ A+ ++ +LG M+ LG
Sbjct: 307 ACGDAAAVPDLTRPGQMTPMTAQHAQRQGKVAAHNVAASYGQGEPRAYKHHDLGFMVDLG 366
Query: 470 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
AA +P + L GP+ ++ + +L+ +P + R++V WL +A+
Sbjct: 367 GVQAAANPLHIP---LSGPVANAVTRGYHLMAMPGN--RVRVAADWLLDAAL 413
>gi|449095652|ref|YP_007428143.1| hypothetical protein C663_3069 [Bacillus subtilis XF-1]
gi|449029567|gb|AGE64806.1| hypothetical protein C663_3069 [Bacillus subtilis XF-1]
Length = 448
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 177/412 (42%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 47 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 104
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 105 CRYQIKGVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 150
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 151 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 209
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ I VE T+ P P + A+ L V
Sbjct: 210 FTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGV 269
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 270 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 299
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 300 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 352
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 353 DTERPYPPTAQIAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 404
>gi|170742659|ref|YP_001771314.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. 4-46]
gi|168196933|gb|ACA18880.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium sp. 4-46]
Length = 440
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 178/422 (42%), Gaps = 78/422 (18%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ ++ RI I+GGG GL A +L + K+ +V LVD+S ++KP+L+E+ +G +D
Sbjct: 4 EAERHRIVIVGGGAAGLQLATKLGDR-YGRRKQAEVTLVDRSRTHIWKPLLHEVAAGSMD 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTH---GGTVLLESGLIVEY 192
A D L + F+ R+ + D +A +H G V E + Y
Sbjct: 63 VGHHA---VDYLHHAHAHHFRYRIGEMVGLDRERRVVRLAASHDAEGREVTPERD--IPY 117
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----V 247
D LV+++G+ PG E A T + A R R+L R +D+ +R V
Sbjct: 118 DTLVIAVGSASNDFGTPGVKEHAIALDTPDQAQRFHRRLINAMIRAHAQDAPVRAGQLHV 177
Query: 248 AVVGCGYSGVELAATVSERLEEKGI--VQAINVETTICPTGTPGNREAALKVLSA----- 300
AV+G G +G EL A + + + I+ + + T EAA ++L A
Sbjct: 178 AVIGAGATGTELVAELHRTTRQVAATGLDRIDPDKDLKLTLI----EAADRILPAVPERL 233
Query: 301 -RKVQLVL---GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
R V +L G VR RV E A Q G+
Sbjct: 234 SRDVMALLAGIGVEVRTGARVTEVRADGVQLADGS------------------------- 268
Query: 357 SQIFEADLVLWTVGSKPLLPHV--------EPPNNRLHDLPLNARGQAETDETLCVKGHP 408
++LV+W G + P V NN+L LP Q DE
Sbjct: 269 --FIASELVVWAAGVRA--PEVLRDLGGLETTRNNQLVVLPSL---QTTRDEN------- 314
Query: 409 RIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
+FALGD + L D ++ RP+P AQ A QQA + + RPL PFR+++ G ++
Sbjct: 315 -VFALGDCAYLIDPATQRPIPPRAQAAHQQASHLLRQMPNRLAGRPLAPFRYRDFGSLVS 373
Query: 468 LG 469
LG
Sbjct: 374 LG 375
>gi|443291089|ref|ZP_21030183.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora lupini str. Lupac 08]
gi|385885911|emb|CCH18290.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora lupini str. Lupac 08]
Length = 433
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 118/467 (25%), Positives = 205/467 (43%), Gaps = 79/467 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G Y A + S + +D + ++++++ ++ F++ P+L E+ +G V+
Sbjct: 3 KPRVVIVGAGFAG-YHAAKTLSRIARD--RAEIVVLNSTDYFLYLPLLPEVAAGVVEPKR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA L V ++ +DH+ + G T + YD LVL+
Sbjct: 60 IAVPLTGTLKGVRV--------VIGEADHVDLQNRWV---GFTQAEGEKNRLAYDRLVLA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA-----VVGC 252
+G+ KL +PG E+A F L +A + D + ++E +D + A VVG
Sbjct: 109 VGSVNKLLPIPGVTEYAHGFRGLPEAVYLHDHIVRQIELAEQAEDPAEQKARSTFVVVGA 168
Query: 253 GYSGVELAA----------TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
GY+G E+AA RL + ++V + P E + KVL+ R
Sbjct: 169 GYTGTEVAAHGQLFTDALHAQRPRLTVRPRWMLLDVAPRVLPELDKRMSETSHKVLNRRG 228
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V + +G V A+ D +K + +
Sbjct: 229 VDVRMGTSV-------------------------AEATCD--------GVKLTDGEYVPT 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD 421
++W VG + P+ +++L L RG+ TDE L V G+P +FA GD++A+ D
Sbjct: 256 CTLVWCVGVR--------PDPFVNELGLRTDRGRLVTDEFLNVPGYPEVFACGDAAAVPD 307
Query: 422 --SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
+ G+ TAQ A +Q N+ A+ P++ +LG ++ LG DAA +P
Sbjct: 308 LVNPGQICGMTAQHAQRQGKRVAHNIAASYGFGQRKPYKHHDLGWVVDLGGKDAAANPLH 367
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVAL 526
V L G + + +L+ +P + R +VG W+ +A+ A+
Sbjct: 368 ---VNLAGLPAKAVTRAYHLMAMPGN--RTRVGADWVLDAALTRSAV 409
>gi|384565861|ref|ZP_10012965.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
gi|384521715|gb|EIE98910.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
Length = 452
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 117/462 (25%), Positives = 201/462 (43%), Gaps = 86/462 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ++GGGF G+ RLE L+ D+ + LV ++ P+L ++ +G + +
Sbjct: 4 PRILVVGGGFAGVECVRRLERLLAPDEAS--ITLVAARNYQLYLPLLPQVAAGMLTPQSV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVEYDWLVLS 198
A L F + R+ P LGV+ C G + + I YD+LVL+
Sbjct: 62 AVSLRRL-------FRRTRI---APGVALGVDLDAKVCVVRG--ISDRIRIEPYDYLVLA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSEL-------ERRNFGKDSLIRVAVV 250
G+ + +PG AE A TL +A + D +++L ER K++ ++ VV
Sbjct: 110 PGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAVPEREE--KEARLQFVVV 167
Query: 251 GCGYSGVE-------LAATVSER---LEEKGIV-QAINVETTICPTGTPGNREAALKVLS 299
G GYSG E L A ++R L+ I +++ + P E A +L
Sbjct: 168 GGGYSGTETVAALHRLTAAAADRYPGLDPSMIKWHLVDIAPKLMPELGEDLGEKATSLLR 227
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
R V + LG + VGE ++ + ++
Sbjct: 228 RRGVDVALGV---SVAEVGE------------------------------ETVRLTDGRV 254
Query: 360 FEADLVLWTVGSKP--LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
++WT G +P L+ ++ R G+ + E + V GHP +FA+GD++
Sbjct: 255 LPCHTLVWTAGVQPSPLIGTLDAETER---------GRLKVTEYMDVPGHPGVFAVGDAA 305
Query: 418 ALRD---SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
A+ D G P TAQ A +Q N+ AA+ +P++P++ +++G ++ LG DA
Sbjct: 306 AVPDIAKGDGAICPPTAQHAQRQGRMVARNVVAALRGQPMVPYQHRDMGLVVDLGGTDAV 365
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+P GV L G + + +++ L T R +V +W+
Sbjct: 366 ANPL---GVRLTGLPAQTVTRGYHMMALHTSVARARVLTNWV 404
>gi|194333438|ref|YP_002015298.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Prosthecochloris aestuarii DSM 271]
gi|194311256|gb|ACF45651.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Prosthecochloris aestuarii DSM 271]
Length = 430
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 181/445 (40%), Gaps = 63/445 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ I+GGGF G+ A L KP +V L+D+ +F+P+LY++ + A +
Sbjct: 3 HVVIVGGGFTGITAAREL-------GNKPDIRVTLIDRKNYHLFQPLLYQVAMSALGAGD 55
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++L+ + FK V+ + P TV + G + YD+L+L
Sbjct: 56 IAEPLRNMLSRYQNITVFKGVVESIDPEQK-------------TVHTDFGELT-YDYLIL 101
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIR-----VAVVG 251
+ G + EFA T+ A + R++ E E D +IR +VG
Sbjct: 102 ACGVKHHYFGHEEWEEFAPGLKTIAQATEIRRRVMEAYEAAERTSDPVIRKKLLTFVIVG 161
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++ E +R K +L + V
Sbjct: 162 GGPTGVELAGSIGEM-----------------------SRHTLSKFYRNIDPKLTRIFIV 198
Query: 312 RCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
R+ G F + S A+ N+ S + + + ++ EA VLW G
Sbjct: 199 EAAPRILGAFAPELASRASRALENLGVQIWSSSMVNNVDKNGVQIGNERIEASTVLWAAG 258
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ + +++ ++ G+ +E L V G+P IF GD + + PLP
Sbjct: 259 VRAV-----SLGSKM-GAEVDRSGRIIVEEDLSVPGYPEIFCGGDQAHFAHHTEYPLPGM 312
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A VA QQ G N+ I + FR+++ G+M +GRN A V V + DG
Sbjct: 313 APVAMQQGRSIGKNILNDIKGKTRKMFRYKDKGQMATIGRNKAIVE---VGRLKFDGAPA 369
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSW 515
L ++ L T +HR+ V + W
Sbjct: 370 WLTWLLVHIYYLTTFKHRILVLMQW 394
>gi|75907165|ref|YP_321461.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena variabilis ATCC 29413]
gi|75700890|gb|ABA20566.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anabaena variabilis ATCC 29413]
Length = 441
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 174/404 (43%), Gaps = 55/404 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ R+ I+G GFGGL A L + VLL+D+ F P+LY++ +G+++
Sbjct: 2 RNRRVVIVGAGFGGLQAAQSLA------NSGADVLLIDRHNYHTFVPLLYQVATGQIEPE 55
Query: 138 EIAPRFADLLANTGVQFFKDRVK-----LLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
IA +L + + K L+ + + +G + T G + +Y
Sbjct: 56 YIAYPIRTILRRFSFNYRRQHQKPQVQFLMAEVEQIDFSGQIVKTAKGAI--------DY 107
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDS-----LIR 246
D+LVL+ G+ + V GA E+AFP +LE+A + + S E+ D+ L+
Sbjct: 108 DFLVLATGSRTQFWGVSGAEEYAFPMRSLEEAVALRNHIFSCFEQAIQESDAAKRRQLLT 167
Query: 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+VG G +GVE+A + E L +G ++ T G E + ++ + LV
Sbjct: 168 FTIVGGGATGVEMAGALVEML--RGCLRR--------DYPTIGFGEVKIILVQSGDRLLV 217
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE-SQIFEADLV 365
EF + + + + + +L LE ++I + V
Sbjct: 218 ------------EFPKKLGNYTYKKLHQLGVEVYLQTRVSQLTQGFVHLENAEIIPSASV 265
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+WT G + LP V L +LP+ +G+ TL HP ++A+GD + + + +G+
Sbjct: 266 IWTAGLEANLPGV------LEELPVAHKGKIVVHPTLQALEHPNVYAIGDLAYV-EKNGK 318
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
L A A QQ N+ I + PF + N G + I+G
Sbjct: 319 SLSGVAPEALQQGVAVARNIQQQIRGKSPKPFNYFNKGRLAIIG 362
>gi|78355689|ref|YP_387138.1| NADH dehydrogenase (ubiquinone) [Desulfovibrio alaskensis G20]
gi|78218094|gb|ABB37443.1| NADH dehydrogenase (ubiquinone) [Desulfovibrio alaskensis G20]
Length = 428
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 169/406 (41%), Gaps = 55/406 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ R+ + GGGF G++ RL DK ++LVD++ F P+LY++ + E++
Sbjct: 7 NSRTRVVVAGGGFAGVWAVRRLAR-----DKNLDIILVDRNNYHTFLPLLYQVAAAELEP 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA + P+ H + + VL G + +D LV
Sbjct: 62 GQIAYPLRAIFRK-------------YPNVHFVIGDVRSIDMKNKVLHTDGPHIPFDKLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
+++G+ VPGA + F LE A + + + ER KD ++ VV
Sbjct: 109 VAMGSFTAFYGVPGADKHCFRLKNLEQAITLRNHIVSCFEQATHERNPDRKDRILTYTVV 168
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVE A ++E + + T PT G +A + +L A +L F
Sbjct: 169 GGGPTGVEYAGALAELIRQP--------LTKDFPTLNTG--QARVVLLEAGDG--LLAGF 216
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE-SQIFEADLVLWTV 369
+RR FE + ++ D + + + P LE S + V+WT
Sbjct: 217 PDHLRRYA-FE---------RLTHMGVDVRLNAKVTAVTPDSVELEGSSPLRTETVVWTA 266
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G + H LP G+ TL V+GHP +F GD + + S P P
Sbjct: 267 GVQ---GHALAGQ---MGLPTGRGGRVPVLPTLQVEGHPDVFVAGDMALPQGDS--PAPL 318
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
A A QQ A N+ AA+ RPL FR+++ G M +GR A V
Sbjct: 319 IAPNAIQQGALAADNIRAALAGRPLRAFRYRDKGSMATIGRAAAVV 364
>gi|148252312|ref|YP_001236897.1| NADH dehydrogenase FAD-containing subunit [Bradyrhizobium sp.
BTAi1]
gi|146404485|gb|ABQ32991.1| Putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. BTAi1]
Length = 424
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 119/464 (25%), Positives = 194/464 (41%), Gaps = 61/464 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 11 VVIVGAGFGGLETTYRLAG------APVRITLIDRRNHHLFQPLLYQVATASLATSEIAW 64
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L+ N + V L S V G A G VLLE V YD LVL+ GA
Sbjct: 65 PIRSLVRN------RPEVTTLFAS----VKGIDAA--GRRVLLEDDTDVAYDTLVLATGA 112
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYS 255
FA TLEDA + R++ +E ER + + + ++G G +
Sbjct: 113 RHAYFGHDEWEPFAPGLKTLEDATTLRRRILVAFERAERERDPARRAAWMTFVIIGAGPT 172
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA T++E +T+ P + + + ++VL R
Sbjct: 173 GVELAGTIAEL-----------ARSTLPPD---------FRSIDTHEARVVL--IEAGPR 210
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP-- 373
+G F + ++ I + + + E + + ++W G +
Sbjct: 211 VLGGFPEDLSAYTLTSLERIGVEVVLGQAVTECTADSVVYGGKRLDTRTLIWAAGVRASR 270
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
+ P +R R Q D T V GHP IFA+GD+ + +G+P+P A
Sbjct: 271 AAEWLGAPADR------AGRLQVAPDLT--VPGHPEIFAIGDTVTIAAWNGQPVPGIAPA 322
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A QQ + + A + R L PFR+ + G + +G+ A + +++ L G +
Sbjct: 323 AKQQGRYVAEAIKARLAGRTLRPFRYHHAGSLAQIGKRLAVIDFGWIK---LRGALAWWI 379
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA--LLQSTLTKVL 535
LA++ L +RL V +SWL A D A L+ +KV+
Sbjct: 380 WGLAHIYFLIGLRNRLSVALSWLWIHARDQRAARLITQGSSKVM 423
>gi|452910798|ref|ZP_21959475.1| NADH dehydrogenase [Kocuria palustris PEL]
gi|452833970|gb|EME36774.1| NADH dehydrogenase [Kocuria palustris PEL]
Length = 454
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 70/387 (18%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
D + +V L+D++ F+P+LY++ +G ++ ++ +L + RV+
Sbjct: 40 DARVRVTLIDRNIYKTFQPLLYQVATGGLNPGDVTM----VLRGLSRKAPNLRVR---QG 92
Query: 166 DHLGVNGP---MACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
D +GV+ ++ GG + + +D L+++ G GA A P T +
Sbjct: 93 DVVGVDPQRRIVSVEDGGAQTQQ----ISFDHLIIANGISANYFGTTGARRHAMPMYTRQ 148
Query: 223 DACRV-DRKLSELERRNFGK-DSLIRVAVVGCGYSGVELAATVSE-RLEEKGIVQAINVE 279
DA + DR +ELER D + V++VG G +GVE+A +++ R +E
Sbjct: 149 DATAIRDRIFAELERSTRSDPDDFLHVSIVGGGATGVEVAGALADFRRDEL--------- 199
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
T+ P L R +Q +R ++R + +KQ E + + AAD+
Sbjct: 200 MTMYPE------------LDERVLQ------IRILQRGKDI---LKQFEDQKLRDYAADE 238
Query: 340 NSDKYI-LELQPAIKGL--------ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD--L 388
++ + L +K + + + E+D+ +W G+ P R+ + L
Sbjct: 239 LRERGVELSTGQGVKAVGYDFVVLADDTVLESDITIWAAGTGP--------EKRVSEWGL 290
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P+ RG +ETL VKGHP I+A GD ++L + PL AQ A Q A + A
Sbjct: 291 PVTGRGALAVEETLQVKGHPGIYAAGDIASLDE----PLAQLAQPAIQTGVHAARMVRAE 346
Query: 449 INDRPLLPFRFQNLGEMMILGRNDAAV 475
+ +PL PF + NLGE +GR A V
Sbjct: 347 VEGQPLRPFHYTNLGEAATIGRRAAIV 373
>gi|118587473|ref|ZP_01544898.1| pyridine nucleotide-disulfide dehydrogenase [Oenococcus oeni ATCC
BAA-1163]
gi|421186557|ref|ZP_15643948.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB418]
gi|118432123|gb|EAV38864.1| pyridine nucleotide-disulfide dehydrogenase [Oenococcus oeni ATCC
BAA-1163]
gi|399966899|gb|EJO01400.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB418]
Length = 390
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 179/435 (41%), Gaps = 75/435 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + H V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKID-------------RHNKKVELKSKSAVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-SLIRVAVVGCGYSGVEL 259
E + + GA EF P ++ A ++L E L R D + + +AV G G++ +E
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKRLEETLARFQSSHDENDLHIAVCGAGFTSIEY 165
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNR------EAALKVLSARKVQLVLGYFVRC 313
+ RL + V+ N+ P + EAA KVL +LV Y V
Sbjct: 166 IGELLHRLPD--FVKRFNL---------PAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNY 213
Query: 314 IRRVG-EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
++ G EF E S+ + + GA+ I+ DK F A+ ++WT G
Sbjct: 214 LKNQGVEFYTETSITEVKKGAV--ISKDK-------------------AFNANTIIWTTG 252
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
K HV + R + L P F +GD SA+ GR P T
Sbjct: 253 VKG--SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTT 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
Q++ QA A N+ A +N++ PF + +LG + LG + SF+ L G
Sbjct: 306 GQISVAQATLAASNIIAKLNNQKTSPFTYHSLGTVCSLGPTNGVAELSFMGHWKLKG--- 362
Query: 491 HSARKLAYLIRLPTD 505
K+A L R+ D
Sbjct: 363 ---HKVAPLKRIVND 374
>gi|433447019|ref|ZP_20410757.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus TNO-09.006]
gi|432000154|gb|ELK21057.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus TNO-09.006]
Length = 408
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 180/416 (43%), Gaps = 76/416 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + +LG G+GGL T RL+ ++ ++ + LV++ + L+E +G +
Sbjct: 5 KKPNVVVLGAGYGGLMTVTRLQKMIGVNE--ASITLVNKHDYHYESTWLHEAAAGTLHHE 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ + V+F +D V+ + + VLL++ + YD+LV+
Sbjct: 63 RVRYAIADVIDQSKVKFIQDTVEKINLEEK-------------QVLLQNHEPLTYDYLVV 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + +A R R+ E + + +D + + V G
Sbjct: 110 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYSTEEEKRDERLTIVVGGA 168
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARK 302
G++G+E + R+ E V+ I VE T+ P P E A+ VL +
Sbjct: 169 GFTGIEFLGELVNRVPELCREYDVDPNRVRIICVEAAPTVLPGFDPELVEYAVNVLEKKG 228
Query: 303 VQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+ +G ++ C PE + + D + E++
Sbjct: 229 VEFKIGTAIKEC------------TPEGIIV-------SKDDQVEEIK------------ 257
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS-A 418
A V+W G + +R+ D RG+ + D L GH +F +GD +
Sbjct: 258 AGTVVWAAGVR---------GSRVIDESGFEAMRGRVKVDPFLRAPGHEDVFVVGDCALI 308
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + + RP P TAQ+A QQ + NL I + L PF+ G + LG +DA
Sbjct: 309 INEETNRPYPPTAQIAMQQGEVCAKNLAVLIRGQGELQPFKPDLKGTVCSLGHDDA 364
>gi|229087439|ref|ZP_04219573.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-44]
gi|228695861|gb|EEL48712.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Rock3-44]
Length = 402
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 177/412 (42%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVSE--AEITLVNNNSYHYQATWLHESAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ V+L++ + EYD+LV+
Sbjct: 60 KIRLDIQDVIDTNKVNFVQDTVVEVKAAEK-------------RVILKNAEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + +A R R+ E + + +D L+ + V G G+
Sbjct: 106 GLGFESETFGIKGLKEHAFSITNI-NATRQIREHMEYKFSQYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ R+ EK + + + P P E A+K L + V+
Sbjct: 165 TGIEYVGELANRIPELCKEYDVPREKARIICVEAAPSALPGFDPELVEYAVKQLEKKGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+G ++ EA+ E G + G + ++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGIL------------------VANGDDVELLKSET 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
V+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 255 VVWAAGVRG--------NGIVEESGFEAMRGRVKVDEYMHAPGHEDVFMVGDAALIINEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLAVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|366086755|ref|ZP_09453240.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus zeae
KCTC 3804]
Length = 396
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/405 (24%), Positives = 177/405 (43%), Gaps = 71/405 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTITVVDQNAEHEERTQLHEVAAGTVPASKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S + V+L + + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFLQAKVSKVDVSTKM-------------VILANHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDA----CRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+ +PGAAE A P + A +++ ++ ++ KD + V V G G++GV
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETITKTIEQHVANYKQSQDPKD--LTVIVAGAGFTGV 164
Query: 258 ELAATVSERLE------EKGIVQAINVE--TTICPTGTPGNREAALKVLSARKVQLVLGY 309
EL ++ + + ++ I++E T I P A+ L + V ++ G
Sbjct: 165 ELLGELTHSMPALAKKYDTPPIKIISMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG- 223
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ + + E A+ + AD + +K + E + ++WTV
Sbjct: 224 ------------SKITKIEPNAV--VYADGDQEKKV---------------EGNTIIWTV 254
Query: 370 GSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPL 427
G ++ + D R + L ++ HP +F +GD SA + SGRP
Sbjct: 255 GVSG--------SDVIADSGFKQRRNRVVVSNHLNLEDHPEVFIIGDVSAVMAGDSGRPY 306
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
P TAQ++ Q+ D AG N+ AA+N +PL F ++ G + LG D
Sbjct: 307 PTTAQISTQEGDQAGKNVAAALNGQPLTDFVYKPKGTVASLGSQD 351
>gi|386759793|ref|YP_006233010.1| hypothetical protein MY9_3221 [Bacillus sp. JS]
gi|384933076|gb|AFI29754.1| YumB [Bacillus sp. JS]
Length = 419
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 177/412 (42%), Gaps = 71/412 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D V + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVTAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AFP + + + R+ R+ EL+ + ++ R + V G G
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDRLTIVVGGAG 180
Query: 254 YSGV----ELAATVSERLEE----KGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+ ELAA V E +E + +V+ + VE T+ P P + A+ L +
Sbjct: 181 FTGIEFLGELAARVPELCKEYDVDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYLEENGI 240
Query: 304 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+ +G V+ C PE ++ K E + ++
Sbjct: 241 EFKIGTAVQEC------------TPEG------------------VRVGKKDEEPEQIKS 270
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRD 421
V+W G + P VE N RG+ + + L GH +F LGDSS + +
Sbjct: 271 QTVVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNE 323
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I L F+ G + LG ++A
Sbjct: 324 DTERPYPPTAQIAMQQGLTVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|42521954|ref|NP_967334.1| NADH dehydrogenase [Bdellovibrio bacteriovorus HD100]
gi|39574484|emb|CAE77988.1| NADH dehydrogenase [Bdellovibrio bacteriovorus HD100]
Length = 429
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 173/401 (43%), Gaps = 56/401 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF GL A L +++ V L+D+ +F+P+LY++ + + EI+
Sbjct: 10 KVVIVGGGFAGLKAARAL-----GNNEDVSVTLIDRRNYHLFQPLLYQVATAGLSPAEIS 64
Query: 141 PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L+ V F D ++ + T+ + + L EYD+L+L+
Sbjct: 65 GPIRGILSKYKNVSVFLDNLE------------NVDLTNKKIQVQDRSL--EYDYLILAC 110
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCG 253
GA+ P E A TLE A + R+L +E E + + +VG G
Sbjct: 111 GAKHSYFAHPEWEENAPGLKTLEQATEIRRRLLMAFERAEKETDPEKQKQQLTFVIVGAG 170
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR-EAALKVLSARKVQLVLGYFVR 312
+GVELA T+ E + + + I P+ T EA ++L+A
Sbjct: 171 PTGVELAGTIGE-ISRHTLTKDFR---HIDPSRTRVILIEAGPRILAA------------ 214
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
F + + + + ++ ++ + +++ L ++ +A +LW G +
Sbjct: 215 -------FHPDLSRKAAADLEDLGVQIWTNTRVTDVKSDSVVLGDEVIKAATILWAAGVQ 267
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P N+ +PL+ G+ ++ L +K HP +F LGD + G+ LP A
Sbjct: 268 P------SSINKTLGVPLDRAGRVIIEKDLSLKEHPEVFVLGDQACYLTDKGQALPGLAS 321
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
VA QQ A + I +P L F++ + G+M +GR A
Sbjct: 322 VAMQQGTHAANQILREIEGKPRLEFKYLDKGQMATIGRRKA 362
>gi|451345660|ref|YP_007444291.1| NADH dehydrogenase [Bacillus amyloliquefaciens IT-45]
gi|449849418|gb|AGF26410.1| NADH dehydrogenase [Bacillus amyloliquefaciens IT-45]
Length = 404
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 174/413 (42%), Gaps = 73/413 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 61 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G EFAFP + + + R + EL+ + ++ R + V G G
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNREA----ALKVLSAR 301
++G+E ++ R E + +V+ + VE PT PG + A++ L ++
Sbjct: 166 FTGIEFLGELANRKPELCRYYDIDESLVRIVCVEA--APTVLPGFDQELVDYAVQYLESK 223
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+ +G V+ R G + K + E + +
Sbjct: 224 GVEFKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIK 254
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LR 420
+ V+W G + P VE N RG+ + + L GH +F LGDSS +
Sbjct: 255 SQTVVWAAGVRGH-PIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFIN 307
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ + RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 308 EETERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 360
>gi|33864073|ref|NP_895633.1| NAD binding site:FAD-dependent pyridine nucleotide-disulfide
[Prochlorococcus marinus str. MIT 9313]
gi|33635657|emb|CAE21981.1| NADH dehydrogenase [Prochlorococcus marinus str. MIT 9313]
Length = 503
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 116/458 (25%), Positives = 188/458 (41%), Gaps = 69/458 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF G+ L + + +V L+D+ +F+P+LY++ +G V
Sbjct: 18 RRAPHVVIIGGGFAGVRACKALA------NTEVRVTLIDKRNFNLFQPLLYQVATGLVSK 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V L P D ++ + + YD+L
Sbjct: 72 GDVATPLRQLIGRQFNVQVLLGEVTQLNPQDKQ--------------IVFNNKSLSYDYL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAV 249
VL+ G+ FA P LE A + R+L +E + L RV +
Sbjct: 118 VLATGSGSTYFGHEEWRSFAPPMKILEHAEEIRRRLLMAMEQAEQTPDPNARQFLQRVVI 177
Query: 250 VGCGYSGVELAATVSERLEE--KGIVQAINVETTICPTGTPGNR--EAALKVL--SARKV 303
VG G +G E+A VSE + + + +N + T PG R A ++L SAR
Sbjct: 178 VGAGPTGCEMAGAVSELMRNAMRREFKQLNPDQTKIYLVDPGVRVLRAMPEMLSKSARTT 237
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
LG + F+ V+ + G + + + N D Q +A
Sbjct: 238 LESLGVEI-------VFKGRVQSMQPGEV--MISTPNGD---------------QCIQAA 273
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
V+WT G +P H+ L D L+ G+ + V GHP I +GD + R
Sbjct: 274 TVIWTAGVRP--SHL---GRNLADSIGCELDKGGRVVVEPDFSVAGHPEIRVVGDLCSYR 328
Query: 421 DSSGR-PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
++ + PLP A A Q F G ++ A ++ F + + G M +L R A
Sbjct: 329 HTTNQNPLPGMAGPATQAGGFVGKDIAALVSGSSRPTFNWFDFGSMAVLDRVAAVAD--- 385
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+ G G IG LA+L +P E+R+ + WL
Sbjct: 386 LRGFKFSGGIGWMCWALAHLAFMPNPENRITLLFKWLV 423
>gi|398813400|ref|ZP_10572097.1| NADH dehydrogenase, FAD-containing subunit [Brevibacillus sp. BC25]
gi|398038824|gb|EJL31976.1| NADH dehydrogenase, FAD-containing subunit [Brevibacillus sp. BC25]
Length = 396
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 164/385 (42%), Gaps = 54/385 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GGL T L+L+ + ++ ++ LV++ L+E +G A
Sbjct: 4 PKILILGAGYGGLLTTLQLQKKLNYNE--AEITLVNKHNYHYITTWLHEPAAGTAPADHA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L V F K V+ + + TV LE+G ++ YD+LV+ L
Sbjct: 62 RVSLDGILNKDKVNFVKGTVQAIQSEEQ-------------TVTLENGEVLSYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD----SLIRVAVVGCGYS 255
G+EP+ + G E AF ++ +A R R+ E F + + V G G++
Sbjct: 109 GSEPETFGIEGLKEHAFSIRSI-NAVRNIREHIEYMFSKFKNEPDRTDYLTFVVGGAGFT 167
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
G+E + +RL E + + +V+ + EAA L +L+ Y + +
Sbjct: 168 GIEFCGELGDRLPE--LCREFDVDPELVKVYCI---EAAPTALPGFDPELIQ-YAMDVLE 221
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
R G E + P P D +L IK + V+W G +
Sbjct: 222 RKG-IEFKIGTPIKQCTP--------DGVLLATGEEIK--------SKTVIWAAGVR--- 261
Query: 376 PHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
N+ + RG+ + DE L GH +F +GD + + + GRP P TAQ+A
Sbjct: 262 -----GNSIVEKAGFEVMRGRVKVDEYLRAPGHENVFVVGDCALIFNEEGRPYPPTAQIA 316
Query: 435 FQQADFAGWNLWAAINDRPLLPFRF 459
Q+ + G NL A + R LP +F
Sbjct: 317 VQEGETLGENLAALV--RGDLPQKF 339
>gi|325106392|ref|YP_004276046.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pedobacter saltans DSM 12145]
gi|324975240|gb|ADY54224.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pedobacter saltans DSM 12145]
Length = 426
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/458 (24%), Positives = 183/458 (39%), Gaps = 85/458 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I I+GGGF G+ +L D + LVD++ F P++Y++ +G ++ I+
Sbjct: 7 KIIIVGGGFAGINLVRKLAKSNLFD-----ITLVDKNNYNFFPPLIYQVATGFLENSNIS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F L + V+F V + P D T++L++G + YD+LV + G
Sbjct: 62 YPFRKLFRDKNVRFRMGAVLRVIPEDK-------------TLILDTGKL-SYDYLVFATG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDS-----LIRVAVVGCGY 254
E + A P TL+DA + L E LE+ +D L+ V + G G
Sbjct: 108 TETNYFGLENVKNNAIPMKTLDDALLMRNILLERLEKATIAEDQEEKTRLMTVVIAGGGP 167
Query: 255 SGVELAATVSE------RLEEKGIVQA------INVETTICPTGTPGNREAALKVLSARK 302
+GVE++ ++E R E +V +N + + ++ L+ L
Sbjct: 168 TGVEISGMLAELRKSTVRREYPELVGTRFELYLVNGGGELLSPMSVKSQTYTLESLEKLG 227
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V ++L RV +F K+S Y+ EA
Sbjct: 228 VNILLN------TRVTDF------------------KDSKVYL---------GNGDTIEA 254
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSAL 419
+ ++W G K + LP N G D V+G I+ALGD+ +
Sbjct: 255 ETLIWASGVKAI---------SFEGLPANIYGSGNRMIVDSFNKVRGMEDIYALGDTCVV 305
Query: 420 RDSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
+ P P AQVA QQ N + PLLPF++ + G M I+G+N A
Sbjct: 306 TEDPEYPGGHPQLAQVAIQQGKNLAANFMRILKQEPLLPFKYDDKGSMAIIGKNKAVADI 365
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
F + + G I A +L+ L +R+K +W
Sbjct: 366 PF-KNIHFQGFIAWLAWLFIHLMSLLNYRNRMKTLYNW 402
>gi|72161354|ref|YP_289011.1| NADH dehydrogenase [Thermobifida fusca YX]
gi|71915086|gb|AAZ54988.1| NADH dehydrogenase [Thermobifida fusca YX]
Length = 451
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 195/466 (41%), Gaps = 86/466 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF GL RLE + + K +++LV ++ +++P+L ++ SG +
Sbjct: 3 RPRIVVVGAGFAGLTALRRLEQRI--PEGKAEIVLVAPNDYMLYQPLLPQVASGLLTPQS 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE--SGLIV--EYDW 194
IA L T + P +G++ T TV++ SG YD
Sbjct: 61 IAVSLHRQLHRTHI----------IPGIAVGLD-----TDRNTVVVRKISGEYSYERYDR 105
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VA 248
L+L+ G+ + +PG E A L +A + D L++LE N D R
Sbjct: 106 LILAPGSVTRTFNIPGLIEHARGNKNLAEAVYLRDHVLAQLELANASDDPAERDERCTFI 165
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQ-----------AINVETTICPTGTPGNREAALKV 297
VVG GY+GVE AA++ E L E Q +++ + P + +++
Sbjct: 166 VVGGGYTGVETAASL-ELLCEAACKQYPKLRPHIQWHVVDIAPRLMPELGEHLGQKTMEL 224
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L R +++ LG VR + DK L +
Sbjct: 225 LRQRGIEVSLGVSVREV-------------------------TEDKVTLT--------DD 251
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
++ ++WT G+ P P LP RG+ L V GHP IF +GDS+
Sbjct: 252 RVLPCRTLIWTAGTAP------SPLIAATGLP-TERGKLSVGADLSVPGHPEIFGIGDSA 304
Query: 418 ALRDSS----GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A+ D S G P TAQ A Q A N+ A++ R + +++ G ++ L DA
Sbjct: 305 AVPDLSKGEDGALCPPTAQHASTQGPVAADNVIASLLGRSTKHYYYRDRGLLVDLSGRDA 364
Query: 474 AVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKS 519
P GV +G + + +L LP+ R++V +WL ++
Sbjct: 365 VARPF---GVEFNGTAALALTRAYHLYSLPSGPARMRVAANWLIQA 407
>gi|345020853|ref|ZP_08784466.1| NADH dehydrogenase [Ornithinibacillus scapharcae TW25]
Length = 404
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 176/412 (42%), Gaps = 71/412 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I +LG G+GG+ T ++L+ + ++ + LV++++ L+E+ +G V
Sbjct: 2 KKPNIVVLGAGYGGIMTTVKLQKSLGANE--ANITLVNKNDYHYQTTWLHEVSAGTVHQD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ + D++ V F +D V + P ++ V LE+ + EYD+LV+
Sbjct: 60 QARVQIKDVINPHKVNFVQDTVVEIKPQEN-------------KVKLENSEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD---SLIRVAVVGCGY 254
LG E +PG E A + + ++ R+ R+ E + KD + + + V G G+
Sbjct: 106 GLGFESATFGIPGLEENALMINDI-NSSRLIREHLEFNFAEYHKDKNPARLNIVVGGGGF 164
Query: 255 SGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 304
+G+E ++ ++ E K V+ INVE T+ P P E A+ L AR V+
Sbjct: 165 TGIEFVGELANKVPELCKEYDIDKSQVRIINVEGAPTVLPGFDPELVEYAMNSLEARGVE 224
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
V G ++ + D + E + + +
Sbjct: 225 FVTGALLK-------------------------ESKPDSVVYEKDGKLNEISTLT----- 254
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 422
+W G K N+ + RG+ E + + +F +GD + + +
Sbjct: 255 TVWAAGVK--------ANSIVEQSGFQTNRGKIEVRPDMRSPEYDNVFVIGDCALIMNEE 306
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
SGRP P TAQ+A QQ+ N+ + + L F ++ LG + LG NDA
Sbjct: 307 SGRPFPPTAQIAIQQSATVAHNVVSLVKGHGELEGFEYKPLGTLASLGHNDA 358
>gi|113867798|ref|YP_726287.1| NADH dehydrogenase [Ralstonia eutropha H16]
gi|113526574|emb|CAJ92919.1| Putative NADH dehydrogenase [Ralstonia eutropha H16]
Length = 475
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 196/458 (42%), Gaps = 84/458 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I I+GGGF G A LE L+ + ++LV F PML E++ V +
Sbjct: 7 IVIIGGGFAGTTLAQALEKLLPTTHR---LILVSDESYTTFNPMLAEVVGASVFPEHVIV 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L T QF V+ D G ++CT L + +D LV + G
Sbjct: 64 PIRQMLRRT--QFIMGTVQ-----DVNYAQGKLSCT-----TLAGLREIPFDHLVFAFGT 111
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCGYS 255
LD+VPG AE A P + DA + +R L +L R D ++R VVG G+S
Sbjct: 112 RANLDLVPGMAEHALPLKLVGDALFIRNRVLRQLARMELESDPVLRRRLGHFIVVGGGFS 171
Query: 256 GVELAATVSE----------RLEEKGIVQAINVETTICPTGTPGN-REAALKVLSARKVQ 304
GVE+A +++ R++ + + + +T + P + AA + ++AR ++
Sbjct: 172 GVEVAGELADYLCSIRRFYPRVQREELAVTLLHDTGQLLSELPASLGMAAARHMAARGIR 231
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
L LG R +R FEA D +L + ++ E
Sbjct: 232 LRLG--TRALR----FEA-------------------DTVVLA--------DGEMIEGAT 258
Query: 365 VLWTVGSK--PLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGD----SS 417
V+ TVG++ PL+ +E +L L RG+ ET+ + V+G P ++A+GD ++
Sbjct: 259 VVCTVGTRPNPLVATLE------RNLALATRRGRIETNPDMSVRGMPGLWAIGDCARVAN 312
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
A D P TAQ A QA NL + R PF +Q+ G M +G
Sbjct: 313 AATDEDSLP---TAQFAVAQARQLAHNLAGHLEQRESKPFSYQSKGAMASIGHMKGVAQ- 368
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V G + G A + YL+R+PT +L++ W
Sbjct: 369 --VYGFSFSGLPAWLAWRALYLMRMPTLGRKLRLWAEW 404
>gi|138896541|ref|YP_001126994.1| NADH dehydrogenase [Geobacillus thermodenitrificans NG80-2]
gi|134268054|gb|ABO68249.1| NADH dehydrogenase [Geobacillus thermodenitrificans NG80-2]
Length = 407
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 178/414 (42%), Gaps = 73/414 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ V+F KD V + P++ VLLE+G + EYD+LV+
Sbjct: 63 RVRYPIADVIDRNKVKFIKDTVTKIAPNEK-------------KVLLENGEL-EYDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + +A R R+ E + + KD + + V G
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYNVEEEKKDERLTIVVGGA 167
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARK 302
G++G+E + R+ E V+ I VE T+ P P E A+ L +
Sbjct: 168 GFTGIEFLGELVNRIPELCREYDIDPNKVRIICVEAAPTVLPGFDPELVEYAVSQLERKG 227
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+ +G ++K+ I I A KG E + +A
Sbjct: 228 VEFKIG-------------TAIKECTPDGI--IVA---------------KGDEVEEIKA 257
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALR 420
V+W G + ++ L R + + D L G+ IF +GD + +
Sbjct: 258 GTVVWAAGVRG--------SSVLEQSGFETMRSRIKVDPFLRAPGYEDIFVVGDCALIIN 309
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + RP P TAQ+A Q+ NL I + L F+ G + LG +DA
Sbjct: 310 EETNRPYPPTAQIAMQEGQLCAKNLAVLIRGQGELESFKPDIKGTVCSLGHDDA 363
>gi|193213153|ref|YP_001999106.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobaculum parvum NCIB 8327]
gi|193086630|gb|ACF11906.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobaculum parvum NCIB 8327]
Length = 430
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/451 (24%), Positives = 186/451 (41%), Gaps = 71/451 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K ++ I+GGGF GL A L + K +V L+D+ +F+P+LY++ + +
Sbjct: 2 KKKVVIVGGGFTGLNAARML-----SNSKDVEVTLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LA + + FK V ++ + T G + EYD+LVL
Sbjct: 57 IATPLRNMLAGHDNITVFKGMVT------NVDLEQRKVITDFGDL--------EYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRNFGKD--SLIRVAVVG 251
+ GA+ E A L A + R++ E ER K+ + +VG
Sbjct: 103 ACGAQHHYFGKNDWEEHAPGLKNLAQASEIRRRVMEAYEAAERTKDPKERKKQLTFVIVG 162
Query: 252 CGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G +GVELA ++ E R + I+ + T ++ + +LG
Sbjct: 163 GGPTGVELAGSIGEMSRYTLSKFYRNIDPKLT--------------RIFIVEAAERILGT 208
Query: 310 FVRCI--RRVGEFEA-SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
F + + E E V+ S + ++ AD + + EA VL
Sbjct: 209 FSHELSSKATRELEKLGVQVWTSSMVSDVDADGVQ-------------IGRERIEAATVL 255
Query: 367 WTVGSKP--LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
W G K + P++ +R G+ + + L + GHP +F GD + G
Sbjct: 256 WAAGVKASEIGPNMGVETDR--------SGRIKIENDLSLPGHPEVFVGGDQACFTLEDG 307
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
LP A VA QQ + G + + +P PF++++ G+M +GRN A V + +
Sbjct: 308 STLPGMAPVAMQQGNAIGRMIRDDLKGKPRKPFKYRDKGQMATIGRNKAIVE---IGNLK 364
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
DG + L ++ L T HR+ V + W
Sbjct: 365 FDGALAWFTWLLVHIYYLSTFRHRVFVLMQW 395
>gi|120599888|ref|YP_964462.1| NADH dehydrogenase [Shewanella sp. W3-18-1]
gi|146292175|ref|YP_001182599.1| NADH dehydrogenase [Shewanella putrefaciens CN-32]
gi|386312846|ref|YP_006009011.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella putrefaciens 200]
gi|120559981|gb|ABM25908.1| NADH dehydrogenase [Shewanella sp. W3-18-1]
gi|145563865|gb|ABP74800.1| NADH dehydrogenase [Shewanella putrefaciens CN-32]
gi|319425471|gb|ADV53545.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella putrefaciens 200]
Length = 429
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 156/386 (40%), Gaps = 56/386 (14%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDIIDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ- 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LL+ I EYD+LVL+LG GA E +LE
Sbjct: 85 CDPDTKTIQLAAVYNDDGELLLDPRPI-EYDFLVLALGGVSNSFNTLGAEEHCIFLDSLE 143
Query: 223 DACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI------- 272
+A KL + + + + +VG G +GVELAA V E ++E G
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKNH 203
Query: 273 --VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 330
V I I P + A VL ++L +G V+ + R G
Sbjct: 204 LDVHLIEASPKILPQLSERVSARAQAVLDKIGIRLHIGVQVKEVTREG------------ 251
Query: 331 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDL 388
+I + + + EA L +W G V+ P L
Sbjct: 252 -------------FITQ--------DGDVIEAGLKVWAAG-------VKGPKAFQNFTKL 283
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P+ R Q E D + VKG I+ALGD + L SG+P+P AQ A Q AD N+
Sbjct: 284 PITPRNQVEVDACMRVKGQIDIYALGDCALLIQDSGQPVPPRAQAAAQMADTLFDNIVNR 343
Query: 449 INDRPLLPFRFQNLGEMMILGRNDAA 474
+ D+P PF +++ G ++ L R A
Sbjct: 344 LQDKPEKPFVYKDYGSLVSLSRFSAV 369
>gi|392947599|ref|ZP_10313233.1| NADH dehydrogenase [Lactobacillus pentosus KCA1]
gi|334881082|emb|CCB81897.1| NADH dehydrogenase [Lactobacillus pentosus MP-10]
gi|339637802|emb|CCC16778.1| NADH dehydrogenase [Lactobacillus pentosus IG1]
gi|392437168|gb|EIW15058.1| NADH dehydrogenase [Lactobacillus pentosus KCA1]
Length = 400
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 174/416 (41%), Gaps = 90/416 (21%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ +LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I
Sbjct: 3 KTLVLGGGYAGMRAVKFLQKSLPTED---EIVLVDQTPTHTEKTNLHEVAAGTIAPDRIT 59
Query: 141 PRFADLLANTGVQFFKDRV-------KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ +++ VQF + V K + DH + YD
Sbjct: 60 YQIPEIIGKR-VQFVQATVNNVDIETKQVSFDDHADMT--------------------YD 98
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVG 251
+LVL+LG + + V GA E A P L + V + E + R + +++AV G
Sbjct: 99 YLVLALGFQSETFGVEGADENALPMDDLATSQAVYEHIEERFKAYRTSKDKNDLKIAVCG 158
Query: 252 CGYSGVELAATVSE---RLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKV 303
G++G+EL +++ +L+ K A V +I P T R+ ALK + V
Sbjct: 159 AGFTGIELLGELTQSLPKLQAKYQTPAAKVVCLERMPSILPMFTQELRDYALKFMEKNNV 218
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
++ LG + I+ GA+ ADKN + F A+
Sbjct: 219 EMRLGSVIEAIK-------------PGAVVYSDADKNEHE----------------FTAN 249
Query: 364 LVLWTVGSKPLLPHV------EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
++WTVG HV E NR+ P L ++GHP +F +GD +
Sbjct: 250 TIIWTVGVSG--SHVIADSGFEQRRNRVVVKP-----------DLSLEGHPEVFIVGDVA 296
Query: 418 ALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
A+ D S RP P TAQ+A + A N+ A +++ F +++ G + L D
Sbjct: 297 AVMDPESNRPYPTTAQIALAAGEQAAKNIGALRHNQATTTFNYESSGTVASLSDRD 352
>gi|189499609|ref|YP_001959079.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeobacteroides BS1]
gi|189495050|gb|ACE03598.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium phaeobacteroides BS1]
Length = 428
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 183/449 (40%), Gaps = 71/449 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF G+ A L + + ++ L+D+ +F+P+LY++ + A +IA
Sbjct: 3 HVMIVGGGFAGINAAKEL-----GNRRDIRITLIDRKNYHLFQPLLYQVAMSALGAGDIA 57
Query: 141 PRFADLLAN-TGVQFFK------DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
++LA + FK D+ + + +D G M+ YD
Sbjct: 58 EPLRNMLAKYKNITVFKGVVENVDKSRKIIQTDF----GEMS----------------YD 97
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRN--FGKDSLIRV 247
+L+L+ G + E A T+ A + R++ E ER + + L+
Sbjct: 98 YLILACGVKHHYFGHEEWEENAPGLKTIAQATEIRRRVMEAYEAAERTSDPVERKKLLTF 157
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
+VG G +GVELA ++ E +R K +L
Sbjct: 158 VIVGGGPTGVELAGSIGEM-----------------------SRFTLSKFYKHIDPKLTR 194
Query: 308 GYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
+ V R+ G F + + A+ + ++ + + + ++ EA VL
Sbjct: 195 IFIVEAAPRILGSFSPELSSKATRALEQLGVQVWTNSMVTNVDENGVQIGNERIEASTVL 254
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
W G + + R ++ ++ G+ +E L + G+P IF GD + +G P
Sbjct: 255 WAAGVRAI------GLGRKMEVDIDRSGRIIVEEDLSIPGYPEIFVGGDQAHFAHHTGNP 308
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
LP A VA QQ G N+ + + PF +++ G+M +GRN A V + + L
Sbjct: 309 LPGMAPVALQQGQSIGKNILNEVKGKQRKPFLYRDKGQMATIGRNKAIVE---MGNMKLF 365
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + L ++ L T +HR+ V + W
Sbjct: 366 GSVAWFTWLLVHIYYLATFKHRVFVLMQW 394
>gi|385810344|ref|YP_005846740.1| NADH dehydrogenase [Ignavibacterium album JCM 16511]
gi|383802392|gb|AFH49472.1| NADH dehydrogenase [Ignavibacterium album JCM 16511]
Length = 411
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/452 (23%), Positives = 189/452 (41%), Gaps = 72/452 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I I+G GFGGL A L D + ++ L+D++ +F+P+LY++ + + +
Sbjct: 2 KKKILIIGAGFGGLTAAKNLA------DTEFEITLIDKTNHHLFQPLLYQVATAALSPSD 55
Query: 139 IAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA LL+ N ++ D V + ++H+ VN +S L E+D+L++
Sbjct: 56 IAVPIRSLLSDNKNIKVILDEVISIDKNNHI-VN-----------FKDSQL--EFDYLIV 101
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVVG 251
++GA + A TL DA + K L+E E + + +VG
Sbjct: 102 AVGARHSYFGKNEWEQLAPGLKTLTDALVIREKIIEALELAEKETNHELMKKYLTFVIVG 161
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++E +E I N R KV + +L F
Sbjct: 162 GGPTGVELAGAIAEIAKETMIKDYKNF------------RPEDTKVFLIEAMDRILSSFD 209
Query: 312 RCIRRVGE---FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES--QIFEADLVL 366
+ + + V+ + + NI+ D G+ + + + ++
Sbjct: 210 KKLSEQAKEDLMNMGVEVKLNAKVENISQD---------------GVHTNQEFIPSKTII 254
Query: 367 WTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
W G++ PLL + +R G+ + + G+P IF +GD++ + +G
Sbjct: 255 WAAGNQASPLLKSLNVETDR--------AGRVIVKKDCSIPGNPEIFLIGDAAHFEEENG 306
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
LP AQVA QQ F + I FR+++ G M +G+ A ++G+
Sbjct: 307 NVLPGVAQVAIQQGKFVAEVIKNQIPPERRPSFRYKDKGTMATIGKAKAVAE---IKGLK 363
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
L G I A + ++ L +R +V + W+
Sbjct: 364 LSGVIAWLAWSIVHIFFLIGFRNRFRVMIEWI 395
>gi|354594911|ref|ZP_09012948.1| NADH dehydrogenase FAD-containing subunit [Commensalibacter
intestini A911]
gi|353671750|gb|EHD13452.1| NADH dehydrogenase FAD-containing subunit [Commensalibacter
intestini A911]
Length = 414
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/423 (24%), Positives = 176/423 (41%), Gaps = 39/423 (9%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KK +I +LGGG G+ +R+ + D K ++ LVD++E +KPML+ +G
Sbjct: 2 KKKQIVVLGGGIAGIEFLVRITKRI--DHSKYELCLVDKNEFHTWKPMLHTFAAGSASLQ 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E F F V + + P H +L + V+YD+LV+
Sbjct: 60 EQGMSFLIQAKRHNFTFQPGEVSEINTEKKEIILAPYIDQHDDEILPQRS--VKYDYLVM 117
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+LG++ G EFA+ + A L + ++ + V +VG G +GV
Sbjct: 118 ALGSKANDFNTKGVDEFAYTIDDVGYALEFYEDLKKYIMQSTILHTKHHVVIVGAGATGV 177
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
ELA +++ L++ T + + + + + VL F R I +
Sbjct: 178 ELAGEIAQTLQQ-------------ASQYTDHDFDKHIDLTIIQSGDRVLPGFKRKISK- 223
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLP 376
SV+Q + NI + ++E+ L+S + AD V+WT G K
Sbjct: 224 -----SVQQ----TMDNIGVNTLLSTRVVEVTKDHVVLDSGKTLPADQVVWTTGIKA--- 271
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
+ + Q T+E + H IF +GD S+ +++ PL TAQVA Q
Sbjct: 272 --TDVTGDIAKTERSKNAQFITNEQFRLLNHEDIFVIGDCSSRQNA---PLAPTAQVARQ 326
Query: 437 QADFAGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 495
QA + N IN P + PF +++ G ++ +GR + SF + G + H A
Sbjct: 327 QAIYLSANFMNLINKVPHIPPFVYKDYGSLVSVGRYGSF--GSFGANAHIKGVLAHLAHV 384
Query: 496 LAY 498
Y
Sbjct: 385 FLY 387
>gi|428309389|ref|YP_007120366.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
gi|428251001|gb|AFZ16960.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
Length = 441
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/446 (24%), Positives = 189/446 (42%), Gaps = 58/446 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PR+ I+G GFGGL A L ++LL+D++ F P+LY++ E++
Sbjct: 5 RSPRVVIVGAGFGGLKAAQLLAR------SGVEILLIDRNNYHTFVPLLYQVAVAELEPE 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+IA + R+ P+ + G V+ + YD+L+L
Sbjct: 59 QIA-------------YPVRRILRRIPNARFVMAEVKQIDFAGQVVETEDSAISYDFLIL 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDS-----LIRVAVVG 251
+ G++ + VPGA E+ P TLE+A + + S E+ KD+ L+ +VG
Sbjct: 106 ATGSKSQYLGVPGAREYTLPMKTLEEAVALRNHIFSCFEQAVREKDATQRQQLLTFVIVG 165
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA + E + G L ++V+++L
Sbjct: 166 GGPTGVELAGALVELMH--------------------GPLVKDYPTLDLQQVRVIL--LQ 203
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVG 370
R V E+ + + + + ++ P A+ + A ++WT G
Sbjct: 204 SGDRLVAEYPQRLGDYTQKQLRTRGVKVHLQAKVSQVTPQAVHLQDGTTILAKTIIWTAG 263
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ P PP L +A+G+ TL + P+++A+GD + + + G+PLPA
Sbjct: 264 VEASPP---PPTGELFP---SAKGKVAVLPTLQLPNQPQVYAIGDVADV-EYKGQPLPAV 316
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A VA QQ N+ + FR+++ G I+ RN A V+ + + +TL G G
Sbjct: 317 APVAIQQGASVANNIKRQLRGLSPQTFRYKDKGRAAIIARN-AGVAQT--DKLTLMGFPG 373
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWL 516
+L LP + L V +SW+
Sbjct: 374 WFLWLGIHLYYLPGLRNSLLVFISWV 399
>gi|381183137|ref|ZP_09891898.1| hypothetical protein KKC_07562 [Listeriaceae bacterium TTU M1-001]
gi|380316976|gb|EIA20334.1| hypothetical protein KKC_07562 [Listeriaceae bacterium TTU M1-001]
Length = 403
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 180/404 (44%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLKKLQ----HANTGAELVLVNKNDYHHETTWLHEAAAGTIEPEQ 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ + F +D V + + TV L + V YD+L+++
Sbjct: 59 LIYPLDKVIQPSKTTFIQDTVVKINKDEK-------------TVSLANNGDVSYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+A +++E ++ + + + KD L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYALTITSVESVKKIRAHIEAQFAKWKTEQKDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVET----TICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V +C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKMYDVPKEKVRIVC-------LEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A S+ + E++ A ++W G +
Sbjct: 216 VLEDRG-VEFLVGKPVKEATAEGVKYAASETEVKEIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEQGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPYPPT 314
Query: 431 AQVAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL A+ D L+ F + G + +G NDA
Sbjct: 315 AQIAMQQADIAAINLAKLAVGDTDLVDFEYHEKGTVCSIGDNDA 358
>gi|212640224|ref|YP_002316744.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus WK1]
gi|212561704|gb|ACJ34759.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus WK1]
Length = 410
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 179/416 (43%), Gaps = 76/416 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + +LG G+GGL T RL+ ++ ++ + LV++ + L+E +G +
Sbjct: 7 KKPNVVVLGAGYGGLMTVTRLQKMIGVNE--ASITLVNKHDYHYESTWLHEAAAGTLHHE 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ + V+F +D V+ + VLL++ + YD+LV+
Sbjct: 65 RVRYAIADVIDRSKVKFIQDTVEKINLEQK-------------QVLLQNHEPLTYDYLVV 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + +A R R+ E + + +D + + V G
Sbjct: 112 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYSTEEEKRDERLTIVVGGA 170
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARK 302
G++G+E + R+ E V+ I VE T+ P P E A+ VL +
Sbjct: 171 GFTGIEFLGELVNRVPELCREYDVDPNKVRIICVEAAPTVLPGFDPELVEYAVNVLEKKG 230
Query: 303 VQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+ +G ++ C PE + + D + E++
Sbjct: 231 VEFKIGTAIKEC------------TPEGIIV-------SKDDQVEEIK------------ 259
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS-A 418
A V+W G + +R+ D RG+ + D L GH +F +GD +
Sbjct: 260 AGTVVWAAGVR---------GSRVIDESGFEAMRGRVKVDPFLRAPGHEDVFVVGDCALI 310
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + + RP P TAQ+A QQ + NL I + L PF+ G + LG +DA
Sbjct: 311 INEETNRPYPPTAQIAMQQGEVCAKNLAVLIRGQGELQPFKPDLKGTVCSLGHDDA 366
>gi|296271151|ref|YP_003653783.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermobispora bispora DSM 43833]
gi|296093938|gb|ADG89890.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermobispora bispora DSM 43833]
Length = 396
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 174/396 (43%), Gaps = 68/396 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LGGG+ G+ +A+RL + +V+LV+ S+RF + L+++ +G+ A
Sbjct: 6 IVVLGGGYTGVMSAIRLARR--TRRTRTRVILVNPSDRFTERLRLHQIATGQRTADH--- 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDH-LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
R LL TG +F + R L P + + G GG L YD+LV +LG
Sbjct: 61 RIPALLHGTGAEFVRGRATHLDPERREVRIAG-----DGGERTLG------YDYLVYALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
A V PG A E A R +L+EL R VAVVG G +GVE A
Sbjct: 110 AVTDTSV-PGVDAHAHTLDDAEAAHRFAERLAELTHRGG------TVAVVGSGLTGVEAA 162
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG-E 319
A ++E N+ T+ + PG+ ++ A+ + +LG + R+G E
Sbjct: 163 AEIAE--------GHPNLHVTLLGSAEPGS------MMGAKARRHLLG----ALDRLGVE 204
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
V+ + +P A + N + + D VLWT G V
Sbjct: 205 ICTGVRVTK---VPPNAVELNGGETV---------------PVDAVLWTAGV------VA 240
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439
P R L ++ RG+ D TL HP ++A+GD++A+R S G + T Q A
Sbjct: 241 APLARAAGLTVDDRGRVVVDATLASVSHPSVYAVGDAAAIRQSWGM-IHGTCQSGVPSAA 299
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+A + + + PFRF + + + LGR DA V
Sbjct: 300 YAADAIARRLRGKRPRPFRFGYVHQPVSLGRRDAVV 335
>gi|408370711|ref|ZP_11168486.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
gi|407743948|gb|EKF55520.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
Length = 451
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 189/457 (41%), Gaps = 74/457 (16%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K PR+ I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPRVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I F + FF+ L + + + T+ G+ V YD+
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFR-----LAEVEEIQPDSNTILTNKGS--------VSYDY 124
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR-KLSELERRNFG-----KDSLIRVA 248
LVL+ G + AE + + D+ + L LE+ +D+L
Sbjct: 125 LVLATGTTTNFFGMDSVAENSLGMKDIRDSLNIRHMMLQNLEQAAITCDDKERDALTNFV 184
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
+VG G +GVE+A ++E + I P P + + + + +LG
Sbjct: 185 IVGGGPAGVEMAGALAEFCK------------YILPKDYPEYPSSIMNIYLIEAIDELLG 232
Query: 309 YF-----VRCIRRVGEFEASVKQPESGAIPNIAADK---NSDKYILELQPAIKGLESQIF 360
+ ++ + + V E A+ N ++ SDK IL
Sbjct: 233 TMSDKASSKTLKYLEDLNVKVLLNE--AVSNYDGNEVTTKSDKTIL-------------- 276
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
A ++WT G K P N + + + + +TD L V+G+ IFA+GD +AL
Sbjct: 277 -AKNLIWTAGVKGQFP------NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALI 329
Query: 421 DSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
S RP P AQ A QQ + G +L I + PF +++ G + +G+ A
Sbjct: 330 -SEERPKGHPQVAQAAIQQGKWLGDSLLKIIKNEAPKPFEYKDKGSLATVGKRKAVAD-- 386
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ + G + +L+ + +RL VG +W
Sbjct: 387 -LGKMKFAGYFAWLLWSIVHLMSISGFRNRLMVGFNW 422
>gi|393765493|ref|ZP_10354055.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. GXF4]
gi|392729075|gb|EIZ86378.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. GXF4]
Length = 443
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 162/389 (41%), Gaps = 73/389 (18%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ + LVD++ ++KP+L+E+ +G +D I D L + + F+ R+ + D
Sbjct: 37 KRAHITLVDRARTHIWKPLLHEVAAGSLD---IGHHAVDYLHHAHMHGFRYRIGSMTGLD 93
Query: 167 HLGVNGPMACTH---GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
+A +H G V E V YD LV+++G+ PG AE A T +
Sbjct: 94 REARTIRLAASHDPEGREVTPERS--VPYDTLVMAVGSTTNDFGTPGVAEHAIALDTQDQ 151
Query: 224 ACRVDRKLSELERRNFGKDSLIR-----VAVVGCGYSGVELAATVS-----------ERL 267
A R ++L R +D +R V V+G G +G ELAA + +R+
Sbjct: 152 AVRFHQRLVNASLRAHTQDGPVRPGQLHVTVIGAGATGTELAAELHRTFRHVVATGLDRI 211
Query: 268 EEKGIVQAINVETT--ICPTGTPGNREAALKVLSARKVQLV--LGYFVRCIRRVGEFEAS 323
+ + VE I P A + LS +QL+ +G VR RV E A
Sbjct: 212 DPSKDIHITLVEAADRILP--------AVPQRLSVEVMQLLNKIGVDVRVKARVTEVRAD 263
Query: 324 VKQPESGA-IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 382
Q G IP+ +LV+W G K PP
Sbjct: 264 GVQLADGTFIPS----------------------------ELVVWAAGVK------APPF 289
Query: 383 -NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADF 440
+ L Q TL P IFA+GD + L ++ S RP+P AQ A QQA
Sbjct: 290 LQGIGGLETTRTNQLVVAPTLQTTRDPDIFAMGDCAYLVEAGSDRPVPPRAQAAHQQASH 349
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILG 469
+ A I+ +PL PF++++ G ++ LG
Sbjct: 350 LIGQIQAKIDGKPLKPFKYKDFGSLVSLG 378
>gi|319891914|ref|YP_004148789.1| NADH dehydrogenase [Staphylococcus pseudintermedius HKU10-03]
gi|386319824|ref|YP_006015987.1| NADH dehydrogenase [Staphylococcus pseudintermedius ED99]
gi|317161610|gb|ADV05153.1| NADH dehydrogenase [Staphylococcus pseudintermedius HKU10-03]
gi|323464995|gb|ADX77148.1| NADH dehydrogenase, putative [Staphylococcus pseudintermedius ED99]
Length = 400
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/446 (24%), Positives = 194/446 (43%), Gaps = 70/446 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ ++ +LG G+ GL T +L+ + + D Q+ L+++++ L+E +G ++
Sbjct: 3 ERKKVLVLGAGYAGLQTVTKLQKKLSEQD--AQITLINKNDYHYEATWLHEASAGTLNYE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ ++L V F + V + + + T G I EYD LV+
Sbjct: 61 DVLYPIENVLKKH-VDFVRAEVTKIDRNAK-----KVETTRG---------IFEYDILVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E AF + A ++ R L E + N+ D + + V G
Sbjct: 106 ALGFESETFGIEGMKEHAFQIENVNTARQISRHL-EDKFANYAASKTKDDKDLAILVGGA 164
Query: 253 GYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G++G+E +++R+ E K V+ V+ T EAA K+L +LV
Sbjct: 165 GFTGIEFLGELTDRIPELANKYGVEQSKVKVTCV--------EAAPKMLPMFSDELVSHA 216
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+R EF+ P +AA N +++++ E Q EA+ V+W
Sbjct: 217 VSYLEQRGVEFKVGT--------PIVAA--NDKGFVVKIND-----EEQQLEANTVIWAA 261
Query: 370 GSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSG-RP 426
G + ++L + RG+ T + L ++G+ IF +GD SA G RP
Sbjct: 262 GVR---------GSQLMEKSFEGVKRGRIVTKQDLTIEGYDDIFVIGDVSAFIPEGGDRP 312
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
LP TAQ+A QQ + N+ + P F++ + G + LGR+D V G +
Sbjct: 313 LPTTAQIAMQQGEKTASNIVNILKGAPTEDFKYSDRGTVCSLGRHDGV---GIVYGREIT 369
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVG 512
G +K A++ R+ K+G
Sbjct: 370 G------KKAAFMKRVIDTRAIFKIG 389
>gi|163845740|ref|YP_001633784.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chloroflexus aurantiacus J-10-fl]
gi|222523445|ref|YP_002567915.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chloroflexus sp. Y-400-fl]
gi|163667029|gb|ABY33395.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chloroflexus aurantiacus J-10-fl]
gi|222447324|gb|ACM51590.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chloroflexus sp. Y-400-fl]
Length = 389
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 180/414 (43%), Gaps = 71/414 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILG G+ GL TAL L L + + +VDQ+ +L+ + + +
Sbjct: 2 RIVILGAGYAGLRTALDLARLRRAYGLEITIQVVDQNPYHQLVQLLHLTATAGITDQKSI 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ L V+ + RV+ + P + V+L +G +EYD LVL+LG
Sbjct: 62 YQLDTLFRGREVERIEGRVEAIHPLER-------------RVVLNTGQTLEYDRLVLALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIRV----AVVGCGY 254
+E VPGA E+ P T DA ++ + L E R + + +R+ A+VG GY
Sbjct: 109 SETAFQ-VPGAREYTLPLRTFSDALKLRKHLIEQFTRAASITDPTELRITMTTAIVGGGY 167
Query: 255 SGVELAATVSERLEEKGIVQAINVETTIC-PTGTPGNREAALKVLSARKVQLV--LGYF- 310
+G ELA ++ ++ +C TG P R+ L R+ L+ LG +
Sbjct: 168 TGCELAGELAAWADD------------LCRQTGAP--RKEVRIALIEREDHLLPHLGTWA 213
Query: 311 ----VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLV 365
VR + R+G ++ P +++++P ++ + ++ A +
Sbjct: 214 SNEAVRRLERLG-VNIFLQTP-----------------VVQVEPQRLRFADGRLLRAGTI 255
Query: 366 LWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
+W G + LL P +RL G+ D L V+GH +FA+GD +A+ D
Sbjct: 256 VWGAGVRAPALLAEAGFPTDRL--------GRVLVDRYLRVQGHATVFAIGDCAAVPDGR 307
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
G LP TA A +Q + L A + LGE++ LG NDA +P
Sbjct: 308 GGTLPPTASYAMRQGEHLAEVLAAEARGEAPRAYEPVELGEVVSLGPNDAVGNP 361
>gi|269125925|ref|YP_003299295.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermomonospora curvata DSM 43183]
gi|268310883|gb|ACY97257.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Thermomonospora curvata DSM 43183]
Length = 452
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/462 (23%), Positives = 190/462 (41%), Gaps = 84/462 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQV--LLVDQSERFVFKPMLYELLSGEVDAW 137
P I I+GGG+ G+YTALRLE + ++ ++ +V +VD ++P L E +G +
Sbjct: 11 PHILIVGGGYVGMYTALRLEKKLRRELRRGEVKITVVDPQSYMTYQPFLPEAAAGNLSPR 70
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +L + V RV + ++ + P+A + YD+LV+
Sbjct: 71 HVVTPLRRVLPHCTV--LGARVTEINHAERWAIVQPVAGPPER---------ISYDYLVM 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVG 251
+ G+ + +PG AE F T+ +A + + L++L+ +D IR VG
Sbjct: 120 AAGSVSRTLPIPGLAEHGIGFKTIGEAIHLRNHVLAQLDIAESTRDEEIRRKALTFVFVG 179
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETT------------ICPTGTPGNREAALKVLS 299
G++GVE A + E + + NV I P P + + L
Sbjct: 180 GGFAGVEALAEL-EDMARTAVKYYRNVSVEDMRWVLVEASDRILPEVGPDMGKWTAEQLR 238
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL---- 355
R + + + F LQ A+ G+
Sbjct: 239 GRGIDVKMKTF-------------------------------------LQSAVDGVVELS 261
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
+ F A ++WT G K P R DLPL+ RG+ + E L ++G R +A GD
Sbjct: 262 DGSRFPAGTLVWTAGVK------AAPVVRHSDLPLDERGRIKATEFLTIEGLVRAYAAGD 315
Query: 416 SSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
++A+ D + GRP AQ A +QA N+ ++ + L P+ ++G + LG
Sbjct: 316 NAAVPDLTNEGRPCAPNAQHAVRQAKVLADNIVRSLRGKTLKPYVHDSVGSVAGLGLYKG 375
Query: 474 AVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ V G+ L G + ++ R+PT +++V W
Sbjct: 376 V---AHVYGIKLKGFPAWFLHRTYHVSRVPTFNRKVRVLADW 414
>gi|357032874|ref|ZP_09094809.1| NADH dehydrogenase [Gluconobacter morbifer G707]
gi|356413865|gb|EHH67517.1| NADH dehydrogenase [Gluconobacter morbifer G707]
Length = 430
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 172/398 (43%), Gaps = 35/398 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P I I+GGG GL A +L + + K ++ L+D+S V+KPML+ +G V
Sbjct: 4 RPEILIVGGGVAGLSLATQLGKSLGKRGKA-RITLIDKSFSHVWKPMLHCFAAGTVLNEN 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F + +F+ V + V P+ + G T++L+S + YD +VL+
Sbjct: 63 DRISFITQASRHHFEFWPGEVVSVDRDKKEVVLSPLHASDG-TLVLDS-RTLRYDAMVLA 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
+G+ PG E P L DA + K + F S + +A+VG G +G +
Sbjct: 121 IGSCANDFGTPGVKEHCLPIDNLVDANHFNEKFRMELLKAFANTSELDIAIVGGGATGTQ 180
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LAA + + L+ IV ++ G L V + +L F +
Sbjct: 181 LAAELHKALD---IVDPYSLHAF-------GRTPPKLHVTLLQSGARILPAFPESVSEAA 230
Query: 319 --EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
E E +GA A ++ +IL+ + A L +W G K P
Sbjct: 231 KTELERIGVTVRTGARVTGA---DASGFILK--------DGTHVPAKLRVWAAGVKA--P 277
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
V LPLN GQ + L K P IFA+GD S + D PLPATAQVA Q
Sbjct: 278 QV---TQTYGGLPLNRSGQILVNGNLSSKDDPNIFAMGDCSFIEDD---PLPATAQVARQ 331
Query: 437 QADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 473
QA+ G +L A I + R + F N G ++ LG+ +
Sbjct: 332 QANHLGRHLPAWIEHGRDVPGCIFHNKGAIVALGKYNG 369
>gi|403235785|ref|ZP_10914371.1| NADH dehydrogenase, FAD-containing subunit [Bacillus sp. 10403023]
Length = 405
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 174/415 (41%), Gaps = 74/415 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP+I +LG G+GGL T + L+ + ++ + LV++++ L+E +G + A
Sbjct: 2 RKPKIVVLGAGYGGLTTVVNLQKTLGVNE--ADITLVNKNDYHYETTWLHEASAGTLPAD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ + D+++ V+F K V + G V+LE +EYD+LV+
Sbjct: 60 RVRYQVEDVISGHKVKFVKGSVVKID-------------REGKRVILEDDSQIEYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCG 253
+LG E + + G E AF S + A ++ + + + D+ + + V G G
Sbjct: 107 ALGGESETFGIKGLKEHAFSISNVNTARQIKEHIEYQFATYNTEEEKDDTRLTIVVGGAG 166
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSAR 301
++G+E + R+ E + V+ I VE PT PG E A+ L +
Sbjct: 167 FTGIEFLGELVNRVPELCRDYDVDQNKVRIICVEA--APTALPGFDAELVEYAVNHLEKK 224
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+ +G ++ G I K+ ++ IK
Sbjct: 225 GVEFKIGTAIK----------------EGTPEGIIVGKD------DVTEEIK-------- 254
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-AL 419
A V+W G + N+ + A RG+ + D+ L GH IF +GDSS +
Sbjct: 255 AGTVVWAAGIRG--------NSVIEASGFEAMRGRVKVDKHLRAPGHDEIFFVGDSSLVI 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ N+ + + L F F N G + LG +D
Sbjct: 307 NEEINRPYPPTAQIAMQQGAVVAKNISVLVRGQGELSAFTFDNKGTVCSLGEHDG 361
>gi|374984509|ref|YP_004960004.1| NADH dehydrogenase [Streptomyces bingchenggensis BCW-1]
gi|297155161|gb|ADI04873.1| NADH dehydrogenase [Streptomyces bingchenggensis BCW-1]
Length = 441
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 200/469 (42%), Gaps = 95/469 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GF G Y A R S +D+ +++LV+ ++ F++ P+L ++ + ++ ++
Sbjct: 5 RIVIVGAGFAG-YQAARTLSRTLRDEA--EIVLVNPNDYFLYLPLLPQVAAAVLEPRRVS 61
Query: 141 PRFADLLANTGVQFFKDRV-------KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
L GV+ V + + +D G G M EYD
Sbjct: 62 ISLVQTLP--GVRLVLGEVDSVDLDARRINWTDPEGRRGRM----------------EYD 103
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA---- 248
LVLS+G+ KL +PG AE A F + +A + D + +LE D R A
Sbjct: 104 RLVLSVGSVNKLLRIPGVAEHAHGFRGMPEALYLRDHMIRQLELAGAADDPAERAARRTF 163
Query: 249 -VVGCGYSGVELAAT---VSERLEEKGIVQA---------INVETTICPTGTPGNREAAL 295
VVG GY+G E+AA +++ L + I++ + P + A
Sbjct: 164 VVVGAGYTGTEVAAHGVLLTDALARRNAALRGAPPPRWLLIDIADRVLPELDRRLSDTAD 223
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+VL+ R V++ G SVK+ D +L+
Sbjct: 224 RVLTKRGVEIRTG-------------TSVKE------------ATKDGALLD-------- 250
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALG 414
+ ++W VG +P + + DL L RG+ D L V GHP + A G
Sbjct: 251 TGEFIATRSLIWCVGVRP--------DPLVDDLGLPTERGRLCVDPYLAVPGHPEVLACG 302
Query: 415 DSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
D++A+ D + G+ P TAQ A +Q AG N+ A + P++ +LG + LG
Sbjct: 303 DAAAVPDLTRPGQFTPMTAQHAQRQGKVAGRNVAATLGYGTRRPYKHHDLGFTVDLGGVQ 362
Query: 473 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
A +P VTL GP+ + + +L+ +P + R++V WL + +
Sbjct: 363 GAANPLH---VTLSGPVANLVTRGYHLMAMPGN--RVRVATDWLIDAVL 406
>gi|452990851|emb|CCQ97909.1| putative NAD-disulfide oxidoreductase [Clostridium ultunense Esp]
Length = 397
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 177/411 (43%), Gaps = 77/411 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P++ ILG G+GGL TA+ L+ + ++ +V LV++ L+E +G +
Sbjct: 4 PKVLILGAGYGGLMTAIHLQRDIQYNE--AEVTLVNKHNYHYMTTHLHEPAAGTAPQEAV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+++ + F K V+ + P + V+L G + YD+LV++L
Sbjct: 62 KVNIDEIINTDLIHFRKGTVEAIDPKEK-------------RVILHDGEL-HYDYLVIAL 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG----KDSLIRVAVVGCGYS 255
G+EP+ + G E+AF ++L +A R R+ E + ++S + + V G G++
Sbjct: 108 GSEPETFGIQGLREYAFGITSL-NAVRTIREHIEYTFSRYHEEGEQESYLTIVVGGAGFT 166
Query: 256 GVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 303
G+E +++R+ + + V+ I+VE PT PG E A++ L A+ V
Sbjct: 167 GIEFVGELADRMPDLCRQFDIPREKVRIISVEA--APTVLPGFDKELVEYAMERLQAKGV 224
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +K + I +A +N IL +
Sbjct: 225 EF-------------RINTPIKSCTAEGI-ELANGEN----IL---------------SK 251
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDS 422
V+WT G + N+ L + RG+ + D L G+ +F +GD+S +
Sbjct: 252 TVIWTGGVR--------GNHLLEEAGFETVRGRVKVDPALRAPGYEDVFVIGDASVVFTK 303
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ+A QQ + NL + + L F G + LGR+D
Sbjct: 304 EGRPYPPTAQIATQQGENCAKNLLSLLRGGTLEEFTPSIQGTLASLGRSDG 354
>gi|390167435|ref|ZP_10219425.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
gi|390168565|ref|ZP_10220523.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
gi|389588807|gb|EIM66844.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
gi|389589985|gb|EIM67991.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
Length = 442
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 187/460 (40%), Gaps = 80/460 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ P I ILGGGF GL A L K +V ++D++ +F P+LY++ + +
Sbjct: 5 RPPHIIILGGGFAGLACAREL------GGKPIRVTIIDRNNYHLFVPLLYQVATAALSPA 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+IA +L D ++++ + +GV+ + L G + +D LV+
Sbjct: 59 DIAQPIRRILRR------HDNIEVVL-GEAVGVD-----PQSRRLSLADGSSLHFDRLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDA----CRVDRKLSELERRN--FGKDSLIRVAVVG 251
+ G+ P A ++EDA R+ R ER+ + L+ + +VG
Sbjct: 107 ATGSRYNYFAHPEWEPLAPGLRSIEDARLLRSRILRSFELAERQPDPHRRAELMTIVIVG 166
Query: 252 CGYSGVELAATVSE----------RLEEKGIVQAINVETTICPTGTPGNREA--ALKVLS 299
G +GVE+A ++E R + G V+ + VE + +R + A + L
Sbjct: 167 AGPTGVEMAGAIAELAHYTLARDFRHIDPGAVRILLVEAGKQILASFPDRLSTYARRRLE 226
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
A V+++LG + D + D ++ Q
Sbjct: 227 AMGVEIMLGKSLE-------------------------DIDGDTLVIG---------GQR 252
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
A ++W G K P + G+ V HP I LGDS+A+
Sbjct: 253 LRAGTIIWAAGIK------ASPAAFWLQAECDRSGRVRVAADFSVPSHPHIHVLGDSAAM 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDAAVSPS 478
D +G+PLPA AQVA QQ + G +L R PL PFRF++ G I+GRN A
Sbjct: 307 NDEAGQPLPALAQVAQQQGRYLGQSLSREFTGRAPLPPFRFRDRGNTAIIGRNAAIFD-- 364
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
L G + + ++ L E RL V + WL +
Sbjct: 365 -FGKRRLKGRLAWLLWAIVHVYLLVGFEKRLLVSIQWLWR 403
>gi|34496447|ref|NP_900662.1| NAD(P)H2 dehydrogenase [Chromobacterium violaceum ATCC 12472]
gi|34102300|gb|AAQ58666.1| NAD(P)H2 dehydrogenase [Chromobacterium violaceum ATCC 12472]
Length = 438
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 187/434 (43%), Gaps = 56/434 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + Q++LVD S ++KP+L+E+ +G ++ E
Sbjct: 9 PRIVIVGGGAGGLELATRLGRTLGAR-HRAQIVLVDGSPTHIWKPLLHEVATGALNTGED 67
Query: 140 APRFADLLANTGVQF-------FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
+ G F + + + S G +G LL + Y
Sbjct: 68 EVNYFAHGYRNGYDFEFGYMQGLDQKRRTIRLSAIPGSDGQ---------LLSPEREIGY 118
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD--SLIRVAV 249
DWLV+++GAE PG AE A +T DA ++ R L + R + G++ + +A+
Sbjct: 119 DWLVIAVGAEANDFGTPGVAEHAMFLNTPNDAEKLRHRVLEQAFRASSGEEPARALSIAI 178
Query: 250 VGCGYSGVELAA----TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
VG G +GVELAA T+ E +Q V ++ EAA ++L+A L
Sbjct: 179 VGGGATGVELAAELNHTMCELHHYGARLQPERVRISVI--------EAADRILAAAPPSL 230
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
S E A NI S +E S++ EAD+
Sbjct: 231 -----------------SAYAEEQLAGKNIRVLTGSRVAAVEADGVALAGGSKV-EADIT 272
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
+W G K L L N Q D L G I+A+GD +A D SG
Sbjct: 273 VWAAGVK-----ASAWLAGLDGLETNRVNQLVVDTRLHCAGGDCIYAMGDCAAAPDGDSG 327
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
R L ATAQVA QQA + L ++D+P PF F+ G M+ LG++ A S + V G
Sbjct: 328 RMLAATAQVAHQQARYLADELARRLDDKPARPFVFKPQGMMVSLGKHTAVGSLAAVVGPK 387
Query: 485 LDGPIGHSARKLAY 498
D + KL Y
Sbjct: 388 RDYHVEGRGAKLIY 401
>gi|296115782|ref|ZP_06834408.1| NADH dehydrogenase [Gluconacetobacter hansenii ATCC 23769]
gi|295977759|gb|EFG84511.1| NADH dehydrogenase [Gluconacetobacter hansenii ATCC 23769]
Length = 426
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 170/396 (42%), Gaps = 41/396 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RI I+GGG GL A RL V + + ++ LVD+S V+KPML+ +G
Sbjct: 3 QKFRIVIVGGGVAGLALATRLGKSVGKSGRA-EITLVDKSFAHVWKPMLHCFAAGTAANE 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + F+ + + P+ +G TVL E L +YD ++L
Sbjct: 62 NDRISFMSQASRHHFDFWPGEISGMDRRARTITLAPVIDPNGETVLDERTL--DYDAVIL 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
S+G+ PG AE L DA + + + F + +A+VG G +G
Sbjct: 120 SIGSRANDFGTPGVAEHCMFIDNLVDANGFNDRFRTELLKAFAYHRELDIAIVGGGATGT 179
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
+LAA + + L + + G + LK+ +L F +
Sbjct: 180 QLAAELHKALGLAALY-------------SFGQKPPELKITLLEAGPRILPAFPEAVS-- 224
Query: 318 GEFEASVKQPES-GAIPNIAA---DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
EA++KQ E+ G + +A + + ++L+ + A L +W G K
Sbjct: 225 ---EAAMKQLEAIGVVVKTSAMVSGADENGFMLK--------DGSHVPATLRVWAAGVKA 273
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P V + D+ L+ GQ E TL V G +FA+GD + + + +P+ TAQ
Sbjct: 274 --PDV---TRKFGDIRLSRSGQLEVRPTLQVTGDDNVFAMGDCAFIAE---KPVAPTAQA 325
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
A QQA +L A I RPL PF F N G ++ LG
Sbjct: 326 ARQQAHHLARHLPAWIAGRPLPPFVFSNKGAVVALG 361
>gi|196250899|ref|ZP_03149584.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. G11MC16]
gi|196209628|gb|EDY04402.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. G11MC16]
Length = 407
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 77/416 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ V+F KD V + P++ VLLE+G + EYD+LV+
Sbjct: 63 RVRYPIADVIDRNKVKFIKDTVTKIAPNEK-------------KVLLENGEL-EYDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G E+AF + + +A R R+ E + + KD + + V G
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYNVEEEKKDERLTIVVGGA 167
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E + R+ E V+ I VE PT PG E A+ L
Sbjct: 168 GFTGIEFLGELVNRIPELCREYDIDPNKVRIICVEA--APTALPGFDPELVEYAVSQLER 225
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ +G ++K+ I I A KG E +
Sbjct: 226 KGVEFKIG-------------TAIKECTPDGI--IVA---------------KGDEVEEI 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-A 418
+A V+W G + ++ L R + + D L G+ IF +GD +
Sbjct: 256 KAGTVVWAAGVRG--------SSVLEQSGFETMRSRIKVDPFLRAPGYEDIFVVGDCALI 307
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + + RP P TAQ+A Q+ NL I + L F+ G + LG +DA
Sbjct: 308 INEETNRPYPPTAQIAMQEGQLCAKNLAVLIRGQGELESFKPDIKGTVCSLGHDDA 363
>gi|423065290|ref|ZP_17054080.1| DoxX family protein [Arthrospira platensis C1]
gi|406713200|gb|EKD08372.1| DoxX family protein [Arthrospira platensis C1]
Length = 569
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 114/446 (25%), Positives = 189/446 (42%), Gaps = 62/446 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I P + V+F + V D + T G + YD LV
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNV------DRINYEYQWVDTDHGQI--------RYDILV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------FGKDSLIRVAVV 250
++ G+ P+LD +PGAA+++ +TLEDA V + + RR + L+ +V
Sbjct: 104 IATGSRPQLDHIPGAAKYSLTLNTLEDAAVVRHHIVDRIRRAILEPEPIDRARLLTFVIV 163
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA + ++L +A+ + P + ++L G+
Sbjct: 164 GGGPTGVELAGGLIDQL------RALLGWRRLFPLAKVILVHSGDRLLP----NFSQGFS 213
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
C R + + SV NS L+ AI A ++WT G
Sbjct: 214 AYCERHLRQLGVSVWLNRR------VLRVNSQGVELDTGEAI--------AAPTIIWTAG 259
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ V+ P ++L + A+G+ + L V HP+++A+GD + L G L
Sbjct: 260 VQ-----VDHP-SQLDQISTAAKGKIIVEPILRVPDHPKVYAIGDVAFLWPDHG--LSGI 311
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A A QQ + N+ + PFR+ + G+ I+ R +S + + G +G
Sbjct: 312 APEAIQQGEAVATNILHQLRGTSPQPFRYIDKGKAAIISRYAGILS---CDRLNNTGFLG 368
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWL 516
+ ++ LP +RL VG +W
Sbjct: 369 WLTWLVIHMCYLPGWRNRLTVGYNWF 394
>gi|441510227|ref|ZP_20992137.1| putative NADH dehydrogenase [Gordonia aichiensis NBRC 108223]
gi|441445763|dbj|GAC50098.1| putative NADH dehydrogenase [Gordonia aichiensis NBRC 108223]
Length = 436
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 189/461 (40%), Gaps = 81/461 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAW 137
KPR+ I+G GF G++ A RL+ K+P QV +VD+ +F+P+LY+ +G +
Sbjct: 4 KPRVVIVGAGFAGVHAARRLK-------KEPVQVTVVDRGTSHLFQPLLYQCATGVLSEG 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195
I LL ++ LL +D + V+ + TVL G + ++YD+L
Sbjct: 57 AITSPVRHLLRRQ-----RNVNVLLGEADDIDVSAKVL-----TVLGADGNPIRLDYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAV 249
V+ G A E A TL+DA + R+ ++E + + AV
Sbjct: 107 VVGTGMRTAYHGCDDAIENAIGMKTLDDALAIRRQVLGAFEIAEALDDPEDRRGWLTFAV 166
Query: 250 VGCGYSGVELAATVSERLE------------EKGIVQAINVETTICPTGTPGNREAALKV 297
G G +GVE+A + E + V + + P+ +P A +
Sbjct: 167 AGAGPTGVEIAGQIRELATLALGREFDSIDPTEARVLLFHGSDRVLPSFSPSLSRRAQRT 226
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L V+ LG V VGE K +SG E
Sbjct: 227 LDKIGVETHLGVHVV---DVGEDTVQTKDKKSG-------------------------EL 258
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+EA LWT G + + P L + + G+ + L V+GHP +F GD+S
Sbjct: 259 TTYEARTTLWTAGVEAV-PFARTLAKAL-GVQQDHGGRIPVRDDLSVEGHPEVFIAGDTS 316
Query: 418 ALRDSSGRPLPATAQVAFQQADFAG---WNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
+LRD LP A+VA Q G +L A +R PF++ +LG + R +A
Sbjct: 317 SLRD-----LPGVAEVAMQGGRHVGAVIADLVAGQTERK--PFKYHDLGNAAYIARRNAI 369
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V +E L G +G A + ++ L +R+ V+W
Sbjct: 370 VQSGRLE---LSGTLGWLAWGVIHVAFLAGVRNRMGAVVTW 407
>gi|377562358|ref|ZP_09791763.1| putative NADH dehydrogenase [Gordonia otitidis NBRC 100426]
gi|377520509|dbj|GAB36928.1| putative NADH dehydrogenase [Gordonia otitidis NBRC 100426]
Length = 436
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 189/461 (40%), Gaps = 81/461 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAW 137
KPR+ I+G GF G++ A RL+ K+P QV +VD+ +F+P+LY+ +G +
Sbjct: 4 KPRVVIVGAGFAGVHAARRLK-------KEPVQVTVVDRGTSHLFQPLLYQCATGVLSEG 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195
I LL ++ LL +D + V+ + TVL G + ++YD+L
Sbjct: 57 AITSPVRHLLRRQ-----RNVNVLLGEADDIDVSAKVL-----TVLGADGNPIRLDYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAV 249
V+ G A E A TL+DA + R+ ++E + + AV
Sbjct: 107 VVGTGMRTAYHGCDDAIENAIGMKTLDDALAIRRQVLGAFEIAEALDDPEDRRGWLTFAV 166
Query: 250 VGCGYSGVELAATVSERLE------------EKGIVQAINVETTICPTGTPGNREAALKV 297
G G +GVE+A + E + V + + P+ +P A +
Sbjct: 167 AGAGPTGVEIAGQIRELATLALGREFDSIDPTEARVLLFHGSDRVLPSFSPSLSRRAQRT 226
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L V+ LG V VGE K +SG E
Sbjct: 227 LDKIGVETHLGVHVV---DVGEDTVQTKDKKSG-------------------------EL 258
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+EA LWT G + + P L + + G+ + L V+GHP +F GD+S
Sbjct: 259 TTYEARTTLWTAGVEAV-PFARTLAKAL-GVQQDHGGRIPVRDDLSVEGHPEVFIAGDTS 316
Query: 418 ALRDSSGRPLPATAQVAFQQADFAG---WNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
+LRD LP A+VA Q G +L A +R PF++ +LG + R +A
Sbjct: 317 SLRD-----LPGVAEVAMQGGRHVGAVIADLVAGQTERK--PFKYHDLGNAAYIARRNAI 369
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V +E L G +G A + ++ L +R+ V+W
Sbjct: 370 VQSGRLE---LSGTLGWLAWGVIHVAFLAGVRNRMGAVVTW 407
>gi|160874289|ref|YP_001553605.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS195]
gi|378707533|ref|YP_005272427.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS678]
gi|418023156|ref|ZP_12662141.1| NADH dehydrogenase [Shewanella baltica OS625]
gi|160859811|gb|ABX48345.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella baltica OS195]
gi|315266522|gb|ADT93375.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS678]
gi|353537039|gb|EHC06596.1| NADH dehydrogenase [Shewanella baltica OS625]
Length = 429
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 156/385 (40%), Gaps = 56/385 (14%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDVVDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIE-Q 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LLE I +YD+LVL+LG GA E +LE
Sbjct: 85 CDPDAKSIQLAAVYNDEGELLLEQRQI-DYDFLVLALGGVSNSFNTLGADEHCIFLDSLE 143
Query: 223 DACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI------- 272
+A KL + + + + +VG G +GVELAA V E ++E G
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGAGATGVELAAELHHVIESVKEYGYLNIATHH 203
Query: 273 --VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 330
V I I P A VL ++L +G V+ + R
Sbjct: 204 LDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR-------------- 249
Query: 331 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDL 388
D +I + + + +A L +W G V+ P L
Sbjct: 250 -----------DGFITQ--------DGDVIKAGLKVWAAG-------VKGPKAFQNFTKL 283
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P+ R Q E D+ + VKGH I+ALGD + L SSG+P+P AQ A Q AD N+
Sbjct: 284 PITPRNQVEVDDCMRVKGHQDIYALGDCALLIQSSGQPVPPRAQAAAQMADTLFDNIVNR 343
Query: 449 INDRPLLPFRFQNLGEMMILGRNDA 473
+ +P F +++ G ++ L R A
Sbjct: 344 LQGKPEKAFVYKDYGSLVSLSRFSA 368
>gi|385674816|ref|ZP_10048744.1| NADH dehydrogenase [Amycolatopsis sp. ATCC 39116]
Length = 434
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/466 (24%), Positives = 188/466 (40%), Gaps = 95/466 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ G TA +L + ++ Q+ ++D ++P L E +G V+ +
Sbjct: 6 RIVIIGGGYVGATTARQLRKRLTAEEA--QLTVIDPRSYMTYQPFLAEAAAGSVEPRHVV 63
Query: 141 PRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
++L TGV V L H+ G Y
Sbjct: 64 VPLREVLPGCKVMAAEATGVDTTSKSVTLRVADGHVEQLG-------------------Y 104
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC--------RVDRKLSELERRNFGKDSL 244
D LV++ G+ K +PG AE F TLE+A R+D S ++R + L
Sbjct: 105 DILVVAPGSVSKTLPIPGLAEHGIGFKTLEEAVYLRNHVLSRLDLAASTMDREL--RRKL 162
Query: 245 IRVAVVGCGYSGVELAATVSER----LEEKGIVQA------INVETTICPTGTPGNREAA 294
+ VG GY+G+E A + + L++ GI ++ + I P +
Sbjct: 163 LTFVFVGGGYAGIEAMAELEDMTRHALKDYGIDRSELRWVLVEAADRIMPEVSSSLASYT 222
Query: 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354
L VL+ R ++ LG ++K E + + G
Sbjct: 223 LDVLTKRGFEVHLG-------------TTLKSCEDCHV-------------------VLG 250
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
+++ F+AD ++WT G KP P DLPLN RG+ TL V G P +F+ G
Sbjct: 251 DDTE-FDADTIVWTAGVKP------SPMLADTDLPLNPRGRVCCATTLEVDGAPGVFSAG 303
Query: 415 DSSALRDSSGRPLPA----TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
D++A+ D + + A +AQ A +QA N+ A + PL +R G + LG
Sbjct: 304 DAAAVPDVTSKEPGAVCAPSAQHASRQAVVLAKNIVATLRGGPLEGYRHSYAGSVASLGL 363
Query: 471 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ GV L G + + +L+ +PT + ++ WL
Sbjct: 364 YQGVAQ---IYGVKLRGWPAWALHRAYHLMTMPTAHRKTRIAADWL 406
>gi|152999668|ref|YP_001365349.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS185]
gi|151364286|gb|ABS07286.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella baltica OS185]
Length = 429
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 156/385 (40%), Gaps = 56/385 (14%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDVVDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIE-Q 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LLE I +YD+LVL+LG GA E +LE
Sbjct: 85 CDPDAKSIQLAAVYNDEGELLLEQRQI-DYDFLVLALGGVSNSFNTLGADEHCIFLDSLE 143
Query: 223 DACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI------- 272
+A KL + + + + +VG G +GVELAA V E ++E G
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGAGATGVELAAELHHVIESVKEYGYLNIAKHH 203
Query: 273 --VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 330
V I I P A VL ++L +G V+ + R
Sbjct: 204 LDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR-------------- 249
Query: 331 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDL 388
D +I + + + +A L +W G V+ P L
Sbjct: 250 -----------DGFITQ--------DGDVIKAGLKVWAAG-------VKGPKAFQNFTKL 283
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P+ R Q E D+ + VKGH I+ALGD + L SSG+P+P AQ A Q AD N+
Sbjct: 284 PITPRNQVEVDDCMRVKGHQDIYALGDCALLIQSSGQPVPPRAQAAAQMADTLFDNIVNR 343
Query: 449 INDRPLLPFRFQNLGEMMILGRNDA 473
+ +P F +++ G ++ L R A
Sbjct: 344 LQGKPEKAFIYKDYGSLVSLSRFSA 368
>gi|159037868|ref|YP_001537121.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Salinispora arenicola CNS-205]
gi|157916703|gb|ABV98130.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Salinispora arenicola CNS-205]
Length = 433
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 122/464 (26%), Positives = 198/464 (42%), Gaps = 83/464 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ +G V+A
Sbjct: 3 KPRVVIVGAGFAGYHAAKTLSRLA---KDQAEIVLLNTTDYFLYLPLLPEVAAGVVEATR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLC-PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ A L D V+L+ +DH+ + G T + YD LVL
Sbjct: 60 ISVPLAGTL---------DGVRLVVGEADHVDLQNRWV---GFTQPEGDRNRIAYDRLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA-----VVG 251
++G+ KL +PG E+A F L +A V D + ++E D + A VVG
Sbjct: 108 AVGSVNKLLPIPGVTEYAHGFRGLPEALYVHDHVVRQIELAEQATDPAEQRARSTFVVVG 167
Query: 252 CGYSGVELAAT------------VSERLEEKGIVQAINVETTICPTGTPGNREAALKVLS 299
GY+G E+AA RL + ++ ++V + P + A +VL
Sbjct: 168 AGYTGTEVAAHGQLFTDRLVGQRSRSRLRPRWML--LDVAPRVLPELDRRMSDTAHQVLD 225
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
R V + +G V G VK + IP +
Sbjct: 226 RRGVDVRMGTSVAVASADG-----VKLTDGEFIPTCS----------------------- 257
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
++W VG +P P V R +G+ TDE L V G P +FA GD++A+
Sbjct: 258 -----LIWCVGVRP-DPFVAQLGLR------TEKGRLVTDEYLNVPGFPEVFACGDAAAV 305
Query: 420 RD--SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
D G+ TAQ A +Q N+ A+ P++ +LG ++ LG DAA +P
Sbjct: 306 PDLAQPGQVCAMTAQHAQRQGKLVAHNVAASYGQGTRRPYKHHDLGWVVDLGGRDAAANP 365
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
++L G + +L+ LP + R +VG WL + +
Sbjct: 366 L---KLSLAGLPAKVVTRGYHLLNLPGN--RARVGTDWLLDATL 404
>gi|297624970|ref|YP_003706404.1| NADH dehydrogenase (ubiquinone) [Truepera radiovictrix DSM 17093]
gi|297166150|gb|ADI15861.1| NADH dehydrogenase (ubiquinone) [Truepera radiovictrix DSM 17093]
Length = 465
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 193/461 (41%), Gaps = 83/461 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDA 136
K+PR+ I+G GF GLY A L + P +VL++DQ+ F+P++Y++ + ++
Sbjct: 6 KRPRVVIIGAGFAGLYAAKALR-------RDPVEVLVIDQNNYHTFQPLIYQVATAGLEP 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++A N F + + GV+ G T+ L G +D+L+
Sbjct: 59 GDVA-------HNVRAIFHRQTNFAFRQATVTGVD-----WEGKTLELAGGAREAFDYLI 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRN----FGKDSLIRVAVVG 251
L+ GA VPG E AF +L +A + L +LER + ++ + +VG
Sbjct: 107 LAAGAVYNDFGVPGVQEHAFFLKSLTEAVNIRSHILRQLERASADPTLVDQGVLNIVIVG 166
Query: 252 CGYSGVELAATVSERLE--------EKGIVQA--INVETT--ICPTGTPGNREAALKVLS 299
G +GVE+A ++E E + +A I VET + P + +R A VL
Sbjct: 167 GGPTGVEMAGALTELFSRVLPQDYPELDLAKAKIILVETMDHLLPPYSEASRTYAETVLR 226
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
R V+L LG + +R + +EL+ ++
Sbjct: 227 ERGVELRLGSTLTAVR---------------------------PHEVELK------SGEV 253
Query: 360 FEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
++W G + PL+ + R H + +N L + G P FA GD +
Sbjct: 254 IPTQTLIWAAGVRGHPLVDALGVELERGHRIKVNP--------DLSLPGRPFAFAAGDLA 305
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND--AAV 475
+D+SGR P A VA Q + + +P F + + G M I+GRN A +
Sbjct: 306 GSKDASGRLHPQVAPVAIQHGKHIARTIRRQLRGQPTTAFSYFDKGSMAIIGRNAGVAEL 365
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
S +F+ +G A +LI LP ++R +W+
Sbjct: 366 SRAFLGLRLRGL-LGWLAWLFIHLIYLPGYQNRFSAFFNWV 405
>gi|330817557|ref|YP_004361262.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia gladioli BSR3]
gi|327369950|gb|AEA61306.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia gladioli BSR3]
Length = 430
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 177/407 (43%), Gaps = 49/407 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K +PRI ++GGG GL A RL + + ++ +V L+D+S ++KPML+ + +G
Sbjct: 2 KHRPRIVVVGGGIAGLLLATRLGDTLGRK-QRAEVTLIDKSPTHIWKPMLHTIAAG---T 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC--THGGTVLLESGLIVEYDW 194
EI + LA+ F + + D +A T G L+ I YD
Sbjct: 58 REIQQQQVIFLAHAREHGFTYQPGEMVGIDRATREIDLAAIETSAGETLIGPRRI-GYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
L+L++G+ PG +A + L ++ + +RV++VG G
Sbjct: 117 LILAVGSRANDFGTPGVTSHCHFIDNQVEAEAFNEALRVRIFQSVVMNRDLRVSIVGAGA 176
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+GVELAA +S LE G P RE +L L +
Sbjct: 177 TGVELAAELSHLLE------------VASSYGDPAIRE-----------RLKLSLYESGP 213
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE-----SQIFEADLVLWTV 369
R + F +V + + I + ++ + P +GL+ SQ AD+++W+
Sbjct: 214 RILAAFPETVSKSSEAQLRQIGFEVHTGTRVTAAGP--EGLQLADGGSQ--PADIMVWSA 269
Query: 370 GSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-GRP 426
G V+ P +L + +N Q TL IFA+GD ++ + RP
Sbjct: 270 G-------VKAPTFLGQLAGIEVNRSNQVAIGPTLQSVDDEHIFAVGDCASYTPAGRERP 322
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQVA QQA F +L A ++ +PL F FQ+LG ++ + +A
Sbjct: 323 LPPTAQVATQQARFLARHLPAWLDGKPLPDFHFQDLGALVSISDYNA 369
>gi|399059901|ref|ZP_10745357.1| NADH dehydrogenase, FAD-containing subunit [Novosphingobium sp.
AP12]
gi|398038692|gb|EJL31846.1| NADH dehydrogenase, FAD-containing subunit [Novosphingobium sp.
AP12]
Length = 439
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 173/416 (41%), Gaps = 66/416 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++K +I I+GGG GL A RL + + K+ ++LVD++ ++KP+L+E+ +G +DA
Sbjct: 4 QQKTQIVIVGGGAAGLELATRLGARYGR--KRHDIILVDENRTHIWKPLLHEVAAGSLDA 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG------LIV 190
+ G ++FK + G++ H +L + G +
Sbjct: 62 NLDEVGYRGHCYRWGYRYFKGSLA--------GIDRAAQRIHLAPILDDRGSEVVGPQTL 113
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER------RNFGKDS 243
YD+LVL+ G+ PG E DA R DR L + R + G D+
Sbjct: 114 RYDYLVLAYGSVTNDFGTPGVKENCIFLDRRVDADRFRDRLLDQCLRVSRAMTNDGGSDA 173
Query: 244 LIRVAVVGCGYSGVELAA---TVSERLEEKG--IVQAINVETTICPTG---TPGNREAAL 295
+RV++VG G +GVELAA + ++ L G + +E ++ G P E
Sbjct: 174 RVRVSIVGGGATGVELAAELFSAADALSHYGLEVFDRSRLEVSLIEAGPRILPALPEKLA 233
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+ SAR LG VR + E A SG
Sbjct: 234 E--SARHELETLGVRVRTATPIVESTAQGMVTGSG------------------------- 266
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
++ ADL +W G K P L L + GQ TL P++FALGD
Sbjct: 267 --EMIAADLQVWAAGVK-----ARPIAGGLDGLETSRSGQVVVLPTLQSATDPKVFALGD 319
Query: 416 SS-ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
+ L RP+P AQ A Q A A NL + RPL F +Q+ G ++ L R
Sbjct: 320 CAYCLLPGRDRPIPPRAQAAHQMATTAYHNLRRLMEGRPLKAFDYQDRGSLVSLSR 375
>gi|383762772|ref|YP_005441754.1| putative oxidoreductase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381383040|dbj|BAL99856.1| putative oxidoreductase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 412
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 158/383 (41%), Gaps = 71/383 (18%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+VLL+D++ F P+LY++ + E++ IA +L P+ +
Sbjct: 29 RVLLLDRNNYHTFLPLLYQVAAAELEPEAIAYPVRSILRR-------------MPNTNFA 75
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-D 228
+ A L S + YD+L+L+ G+ PGA A P ++ DA + +
Sbjct: 76 LAEVQAVDLASRCLETSAGAISYDYLILAAGSTTHFFGTPGAEAHALPLKSMADAIAIRN 135
Query: 229 RKLSELERRNFGKD-----SLIRVAVVGCGYSGVELAATVSERLE------------EKG 271
R L E+ N D ++ +VG G +GVE A+ ++E + G
Sbjct: 136 RVLLSYEKANLESDPERRQQILTFVIVGGGPTGVEFASALAELINGPLRRDFPFLSSSPG 195
Query: 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 331
V + + P P ++ A K L V+++LG + R+ E ++K
Sbjct: 196 RVVLVEAMEALLPGFHPHLQDYAAKRLRRIGVEVLLG---APVTRIDESTVTLKD----- 247
Query: 332 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391
E +I A+ ++WT G + +LP P+
Sbjct: 248 ------------------------EMRI-TAETIVWTAGVQGILPVAR------WGFPVV 276
Query: 392 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451
G+ TL HP ++ +GD + L S PLP A VA QQ +A N+ ++
Sbjct: 277 KSGRVAVLPTLQTPDHPEVYVVGDLAYLEQKSA-PLPMVAPVAIQQGKWAAQNILRQVHG 335
Query: 452 RPLLPFRFQNLGEMMILGRNDAA 474
+ LPFR+++ G M+ +GRN AA
Sbjct: 336 QQPLPFRYRDRGAMVTIGRNAAA 358
>gi|338732570|ref|YP_004671043.1| cyclic nucleotide-binding domain-containing protein [Simkania
negevensis Z]
gi|336481953|emb|CCB88552.1| cyclic nucleotide-binding domain protein [Simkania negevensis Z]
Length = 533
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 196/452 (43%), Gaps = 52/452 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI ILGGGFGG YTA+ L+ + + D ++ LV++ FVF+PML E++ G + +
Sbjct: 2 KKRIVILGGGFGGAYTAMHLQKFLKKQD-DFEITLVNRENYFVFQPMLAEVVGGSLGLLD 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMA--CTHGGTVLLESGLIVEYDWLV 196
LL T + V+ + D G +A TH + V YD LV
Sbjct: 61 TINPLRKLLPKTTLY-----VREIEAIDIEGKKIFLAPKFTH-------KSVEVPYDHLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIRVAVVGCGYS 255
++LG + G E A PF L D+ + ++ + +E + KD +R
Sbjct: 109 IALGNVTDFKGMSGLHEHALPFKNLADSITIRNQVIDVIEAASSEKDPHLR--------- 159
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAA--LKVLSARKVQLVLGYFV-R 312
+L + T + R+ A K + ++++VL + R
Sbjct: 160 ---------RQLLTFVVGGGGFSGTEVVAEVNDFARKLAKQYKTIDCNEIKVVLAHSKDR 210
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ R E S+ + + D + +++ P L+S + SK
Sbjct: 211 LMER--ELSPSLGEYAGKLLKRRGVDIRFNVHLIAATPEEAVLDSG--------ERIASK 260
Query: 373 PLLPHV-EPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPA 429
++ V PN + L L +G+ D + +G ++ALGD +A+ + +G P
Sbjct: 261 TIISTVPSSPNPLIEGLALKTVKGKITVDANMLAEGRNDVWALGDCAAIPNLEAGGICPP 320
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 489
TAQ A +QA N+ A+I ++ FRF+ LG M LG + +AV+ F + G
Sbjct: 321 TAQFAIRQAKVLAHNIVASIRNKQKKEFRFKALGMMGALGHH-SAVAELFGK-FKFSGIC 378
Query: 490 GHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
+L Y ++LP + ++KV +SW+ + +
Sbjct: 379 AWFLWRLIYWMKLPGVDRKVKVALSWILDTMV 410
>gi|319778063|ref|YP_004134493.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317171782|gb|ADV15319.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 464
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 116/451 (25%), Positives = 187/451 (41%), Gaps = 70/451 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ++GGGF GL A L + V ++D+ +F+P+LY++ + + A +I
Sbjct: 19 PRIVVVGGGFAGLEVAKAL------GGAEIGVTIIDRHNHHLFQPLLYQVATAALSAPDI 72
Query: 140 APRFADLLANT-GVQ-FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
A +L VQ F + K+ T ++L G V YD LVL
Sbjct: 73 AEPIRKILGRYPSVQVLFGNVAKI--------------DTEARILVLADGTTVPYDLLVL 118
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVG 251
+ G++P A ++EDA + +L +E + L+ +A++G
Sbjct: 119 ATGSQPFYFSQESWARVCPGLKSIEDARTIRSRLLLSFEHAERTTDPVEQSRLMTIAIIG 178
Query: 252 CGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G +GVELA +++E R + I E T GNR L+ G
Sbjct: 179 GGPTGVELAGSIAELSRHTLARDFRNIRPEKTKIILVEAGNR-------------LLAG- 224
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
F + + + ++ D D + ++ + ++ L LW
Sbjct: 225 ----------FAPELSEYARLRLESLGVDVALDSRVEAIEAQKITVGGKVIPVALTLWAA 274
Query: 370 G--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
G + PL + + L+ G+ + L V G IFALGD + D +G+PL
Sbjct: 275 GVAASPLAAQL--------GVGLDRGGRVKVGSDLQVMGRSDIFALGDVALFLDENGQPL 326
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEG-VTL 485
P AQVA QQ + G L + LP F F+N G I+GR+ A F G + L
Sbjct: 327 PGLAQVAKQQGEHLGKALARRTDTGEDLPAFVFRNRGNTAIVGRHAAV----FESGRLKL 382
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G SA + ++ L +HR++V + WL
Sbjct: 383 KGWFAWSAWAIIHVYLLVGFQHRVQVSIQWL 413
>gi|317130093|ref|YP_004096375.1| NADH dehydrogenase (ubiquinone) [Bacillus cellulosilyticus DSM
2522]
gi|315475041|gb|ADU31644.1| NADH dehydrogenase (ubiquinone) [Bacillus cellulosilyticus DSM
2522]
Length = 403
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 167/391 (42%), Gaps = 83/391 (21%)
Query: 78 KKPRICILGGGFGGLYTALRLESL-VWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
KKP+I ILG G+GG+ TA RL+ +QD ++ LV++ L+E +G +
Sbjct: 4 KKPKIVILGAGYGGMMTASRLQKANAYQD---AEITLVNKHNYHYQTTWLHEPAAGTLHH 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++ + F KD V + + V+LE+G + EYD+LV
Sbjct: 61 DRTRMLIDSVIDTNKINFVKDAVSEIKTDEK-------------KVILENGEL-EYDYLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK-----DSLIRVAVVG 251
+ LG+EP+ +PG E AF ++ ++ R+ R+ E N+ K D + V G
Sbjct: 107 VGLGSEPETFGIPGVNEHAFSIRSV-NSVRLIREHIEYMFANYNKEEEKHDDYLHFVVAG 165
Query: 252 CGYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNRE----AALKVLS 299
G++G+E +SER+ E + V+ +VE PT PG E A+ +L
Sbjct: 166 AGFTGIEFVGELSERVPELCAEYDIAREKVKIYSVEA--APTALPGFDEDLVTYAMNLLE 223
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
R V+ ++ + + G VK +KG E
Sbjct: 224 DRGVEFLINTPIEEVTAEG-----VK--------------------------LKGGEE-- 250
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS 417
++ V+WT G + + + D RG+ + ++ L GH IF +GD +
Sbjct: 251 IKSRTVVWTTGVR---------GSSILDKSGFETMRGRIKVEKDLRAPGHDDIFVIGDCA 301
Query: 418 -ALRDSSGRPLPATAQVAFQQADFAGWNLWA 447
+ + RP P TAQ+A QQA NL A
Sbjct: 302 LIINEEINRPYPPTAQIAIQQALTCAKNLKA 332
>gi|421739288|ref|ZP_16177609.1| NADH dehydrogenase, FAD-containing subunit [Streptomyces sp. SM8]
gi|406692345|gb|EKC96045.1| NADH dehydrogenase, FAD-containing subunit [Streptomyces sp. SM8]
Length = 428
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 165/402 (41%), Gaps = 62/402 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA- 140
+ ++GGGF G+ A +L + LLVD F+P+LY+L + ++ E+A
Sbjct: 7 VIVVGGGFAGIEAATKLGR------AGVRTLLVDVHGYHQFQPLLYQLATAQIGVSELAR 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD-WLVLSL 199
P + V+ RV + P T+ L G + E D L+++
Sbjct: 61 PLRSIFRRQPSVRVLTARVAAVDPGRR-------------TITLTDGTVYEADDALIVAC 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDS---LIRVAVVGCGYSG 256
GAE PGA E A+P + DA R+ KL L + KD+ + VAVVG G +G
Sbjct: 108 GAEANFFDTPGARENAYPLYSATDATRLGSKLVALLDQA-DKDTEPKSMNVAVVGAGPTG 166
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VE A +++ AIN + P G+ V V LG F + +
Sbjct: 167 VETAGAIAD---------AINY---VVPKLFAGDLAKRCSVALVDMVDRTLGGFSKKSQA 214
Query: 317 VGE---FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
E V+ A+ + D + + +ADLV+W G K
Sbjct: 215 YAASRLVERGVRLKLGSAVTEVRED------------GLSFADGATMDADLVIWAGGLKA 262
Query: 374 --LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431
LL R +P G+ + + L V G+ ++ LGD++ + D LP
Sbjct: 263 GKLL--------RESGMPQGRGGRIDVAKDLTVPGYEGVYVLGDAANITDDRDERLPQLG 314
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
VA Q +A N+ A RP PF +++ G M ++GR A
Sbjct: 315 SVAKQSGGWAARNILAQRAGRPTEPFGYKDRGYMAMIGRGSA 356
>gi|376005356|ref|ZP_09782870.1| DoxX family protein [Arthrospira sp. PCC 8005]
gi|375326283|emb|CCE18623.1| DoxX family protein [Arthrospira sp. PCC 8005]
Length = 569
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 113/446 (25%), Positives = 187/446 (41%), Gaps = 62/446 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I P + V+F + V D + T G + YD LV
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNV------DRINYEYQWVDTDHGQI--------RYDILV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------FGKDSLIRVAVV 250
++ G+ P+LD +PGAA+++ +TLEDA V + + RR + L+ +V
Sbjct: 104 IATGSRPQLDHIPGAAKYSLTLNTLEDAAVVRHHIVDRIRRAILEPEPIDRARLLTFVIV 163
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA + ++L +A+ + P + ++L G+
Sbjct: 164 GGGPTGVELAGGLIDQL------RALLGWRRLFPLAKVILVHSGDRLLP----NFSQGFS 213
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
C R + + SV NS L+ AI A ++WT G
Sbjct: 214 AYCERHLRQLGVSVWLNRR------VLRVNSQGVELDTGEAI--------AAPTIIWTAG 259
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ P ++L + A+G+ + L V HP+++A+GD + L G L
Sbjct: 260 VQADHP------SQLDQISTAAKGKIIVEPILQVPDHPKVYAIGDVAFLWPDHG--LSGI 311
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A A QQ + N+ + PFR+ + G+ I+ R +S + + G +G
Sbjct: 312 APEAIQQGEAVATNILHQLRGTSPQPFRYIDKGKAAIISRYAGILS---CDRLNNTGFLG 368
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWL 516
+ ++ LP +RL VG +W
Sbjct: 369 WLTWLVIHMCYLPGWRNRLTVGYNWF 394
>gi|431796617|ref|YP_007223521.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
gi|430787382|gb|AGA77511.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
Length = 446
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 184/416 (44%), Gaps = 57/416 (13%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P +P++ ILGGGF GL A ++ + QV+L+D++ F+P+ Y++ + +
Sbjct: 14 PVSNRPKLVILGGGFAGLKLARKMIK------SEYQVILLDKNNYHQFQPLFYQVATASL 67
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ + + F RV P+ + + G L + V++D
Sbjct: 68 EP-------------SAISFPLRRVFHHTPNVSFRMAEALEIDQEGKRLYTNVGYVDFDQ 114
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVA 248
LVL++GA+ + E+ P T+ +A V +R +S E+ +D +L+ V
Sbjct: 115 LVLAMGADTNYFGMQNIMEYGTPMKTVSEALYVRNRIISNYEKAINIEDVEQRKALMNVV 174
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKVQLVL 307
+VG G +GVELA ++E + + P P N + VL+ +L+
Sbjct: 175 IVGGGPTGVELAGAIAE------------LRNNVFPKDYPELNFKNMRVVLAEAGPKLLA 222
Query: 308 GYFVRCIRRVGEFEASVKQPESGA-IPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + + +A V + G I AA ++ D ++ IK ES E +L
Sbjct: 223 G-----MSQQSSEKAVVYLDKLGVEIMVNAAVEDYDGLTIK----IKDHES--LETKTLL 271
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-R 425
W G KP H++ L + + G+ D+ +K I+ +GD L D +
Sbjct: 272 WAAGVKP--NHIKG----LREDQMIRNGRLIVDQYNKLKDTEGIYVIGDLCVLTDDDYPK 325
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
P AQVA QQAD NL A ++R + F++++LG M +GR A V F++
Sbjct: 326 GHPQVAQVAIQQADNLAHNLKAVADNRSMKKFKYKDLGSMATVGRKLAVVDLPFIK 381
>gi|424759361|ref|ZP_18187027.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
R508]
gi|402404819|gb|EJV37432.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
R508]
Length = 403
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 98/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVNEKMTTFIQGTVKTIDAATQ-------------TVALEGGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ DS +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDSETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|32266742|ref|NP_860774.1| NADH dehydrogenase Ndh [Helicobacter hepaticus ATCC 51449]
gi|32262793|gb|AAP77840.1| NADH dehydrogenase Ndh [Helicobacter hepaticus ATCC 51449]
Length = 401
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 175/413 (42%), Gaps = 78/413 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I I+GGG+GGL TA+ L+ + D V L+ + + +L+++ G + A +
Sbjct: 2 KPKILIVGGGYGGLRTAITLQEQLKVD---ADVTLISKHDYHYQTTLLHKVAIGTLSARK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F +L V F KD++ P ++ +G EYD+LV++
Sbjct: 59 SRVYFRKILDLQKVHFIKDKILSFEPESKR--------------VIGNGGAYEYDYLVIA 104
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----GKDSLIRVAVVGCGY 254
LG +P + G E+A S+L A ++D KL E + + D L V V G G+
Sbjct: 105 LGFKPDDFGIKGVEEYAHKLSSLNAALKLD-KLIEYRFKEYCHTKNADDL-SVIVCGTGF 162
Query: 255 SGVELAATVSERLEE----KGI------VQAINVETTICPTGTPGNREAALKVLSARKVQ 304
+G+E AA + RL++ GI V I I P + A K L A V+
Sbjct: 163 TGIEFAAELGSRLDDLCLIGGIPRDVPKVTCIGRSDRILPMFSKKGSALAQKKLEAFGVE 222
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
++ G V+ R G V +G I +I + +
Sbjct: 223 VICGGDVQECRSDG-----VMIKHNGEIKHI-------------------------KGNT 252
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDS--SALRD 421
+LW+ G K N+ L +G+ + D L + I+ +GD SA RD
Sbjct: 253 ILWSAGVK--------GNDSLERSCFETTKGRIKVDPYLRCPQYENIYVVGDCAISASRD 304
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDA 473
+ P TAQ+A Q D+ G +L +N++P F F++ G + +G D
Sbjct: 305 AIHAP---TAQLAAQMGDYVGKSLIKILNNKPQKKVFAFKHRGTVCSIGHTDG 354
>gi|359464044|ref|ZP_09252607.1| pyridine nucleotide-disulfide oxidoreductase [Acaryochloris sp.
CCMEE 5410]
Length = 424
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 114/454 (25%), Positives = 187/454 (41%), Gaps = 80/454 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA-WE 138
P I I+G GFGGL TA L +V L+D++ F P+LY++ + ++ W
Sbjct: 7 PLIVIIGAGFGGLQTATSL------GGAAARVTLIDRNNYHTFVPLLYQVATATLEPEWI 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
P L VQF + V+ A + ++++YD+LVL+
Sbjct: 61 ALPIHKLLRRYKNVQFVQGNVE--------------AVDLTAQRVQTEQVMLQYDYLVLA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-----SLIRVAVVGC 252
G++ L VPGA E A P TLEDA + L + +E+ K+ L+ +A+VG
Sbjct: 107 TGSQTHLQGVPGAKEHALPLRTLEDAIALKHHLLQCIEQAAQTKNPDERRQLLTIAIVGG 166
Query: 253 GYSGVELAATVSERLEEK-----GIVQAINVETTICPTGTPGNRE--AALKVLSARKVQL 305
G +GVE+A + E + +Q V+ + +G+ E +L+ + +K+
Sbjct: 167 GATGVEMAGALVELCHQSWPKDYPWLQDDPVQLILVQSGSELLPEFPHSLRTYTYKKLA- 225
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGA-IPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
+LG ++ +V AS + +SG IP
Sbjct: 226 ILGVNIQVETKVASVHASHLELDSGTRIP----------------------------CAT 257
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
+WT G K P E LP R + +L ++ +P ++ALGD++ + D +
Sbjct: 258 TIWTAGVKAAHPPTEA------ALPQGHRDKIPVLSSLQLQQYPEVYALGDAAQVPDQA- 310
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG--RNDAAVSPSFVEG 482
L A A QQ NL + PFR+ N G + I+G + P
Sbjct: 311 --LAGVAPEALQQGVCTARNLRRQLKGLTPQPFRYFNKGRLAIIGCFSGVGKIGP----- 363
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
L G +G + + P +RL + V+WL
Sbjct: 364 FPLRGFLGWFLWLAVHWVYSPGYRNRLMILVTWL 397
>gi|294634075|ref|ZP_06712630.1| NADH dehydrogenase [Streptomyces sp. e14]
gi|292829889|gb|EFF88243.1| NADH dehydrogenase [Streptomyces sp. e14]
Length = 463
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 116/463 (25%), Positives = 202/463 (43%), Gaps = 85/463 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF G+ RLE + + V LV ++ P+L ++ SG +
Sbjct: 12 RPRILVVGAGFAGVECVRRLERRL--SPHEADVTLVTPFAYQLYLPLLPQVASGVLTPQS 69
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--YDWLV 196
IA ++ Q ++ R+ P +GV+ T+ + IV YD++V
Sbjct: 70 IA------VSLRRSQKYRTRI---IPGGAIGVDLRAKVCVIRTI---TDRIVNEPYDYIV 117
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVV 250
L+ G+ + +PG + AF TL +A + D +S+L+ + +D S ++ VV
Sbjct: 118 LAPGSITRTFDIPGLTDHAFGMKTLAEAAYIRDHVISQLDLADASEDPAERASRLQFVVV 177
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETT--------ICPTGTP--GNR--EAALKVL 298
G GY+G E AA + +RL + + ++ I P P G++ +AL+VL
Sbjct: 178 GGGYAGTETAACL-QRLTHAAVERYPRLDPALIKWHLIDIAPKLMPELGDKLGRSALEVL 236
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
R +++ LG I + GE E + + +
Sbjct: 237 RRRGIEVSLGV---SIAKAGEEEVTFT------------------------------DGR 263
Query: 359 IFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
+ ++WT G + PL+ ++ RG+ + +C+ G +FA+GDS
Sbjct: 264 VVPTRTLIWTAGVVASPLIATLDAET---------VRGRLAVNADMCLPGEDGVFAVGDS 314
Query: 417 SALRD---SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+A+ D G P TAQ A +Q N+ AA+ +PL P+ ++LG ++ LG DA
Sbjct: 315 AAVPDLAKGDGAVCPPTAQHASRQGKAVAENVIAALRGQPLRPYHHKDLGLVVDLGGADA 374
Query: 474 AVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
P GV L G + + +L L T+ + +V +WL
Sbjct: 375 VSKPL---GVELHGVPAQAVARGYHLAALRTNVAKTRVATNWL 414
>gi|113971279|ref|YP_735072.1| NADH dehydrogenase [Shewanella sp. MR-4]
gi|113885963|gb|ABI40015.1| NADH dehydrogenase [Shewanella sp. MR-4]
Length = 429
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 156/377 (41%), Gaps = 56/377 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIE-QCEPDAKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 QLAAVYSDSGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEKHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI---------VQAINV 278
L + + + + +VG G +GVELAA V E ++E G V I
Sbjct: 152 LLDALLQLNETQEKVSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKHHLDVHLIEA 211
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
I P A VL ++L +G V+ + R
Sbjct: 212 SPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR---------------------- 249
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQA 396
D +I + + + EA L +W G V+ P LP+ R Q
Sbjct: 250 ---DGFITQ--------DGDVIEAGLKVWAAG-------VKGPKAFQNFSKLPITPRNQV 291
Query: 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456
E D + VKGH I+ALGD + L SG+P+P AQ A Q AD N+ + + + P
Sbjct: 292 EVDACMRVKGHQDIYALGDCALLILESGQPVPPRAQAAAQMADTLYENIVSRLQGKAEKP 351
Query: 457 FRFQNLGEMMILGRNDA 473
F +++ G ++ L R A
Sbjct: 352 FVYKDYGSLVSLSRFSA 368
>gi|290891444|ref|ZP_06554503.1| hypothetical protein AWRIB429_1893 [Oenococcus oeni AWRIB429]
gi|419759129|ref|ZP_14285435.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB304]
gi|419857312|ref|ZP_14380022.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB202]
gi|421183975|ref|ZP_15641404.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB318]
gi|421188563|ref|ZP_15645900.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB419]
gi|421195750|ref|ZP_15652953.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB568]
gi|421196227|ref|ZP_15653416.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB576]
gi|290478886|gb|EFD87551.1| hypothetical protein AWRIB429_1893 [Oenococcus oeni AWRIB429]
gi|399904051|gb|EJN91513.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB304]
gi|399965043|gb|EJN99670.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB419]
gi|399968612|gb|EJO03045.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB318]
gi|399974876|gb|EJO08945.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB568]
gi|399977427|gb|EJO11407.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB576]
gi|410498377|gb|EKP89833.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB202]
Length = 390
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 112/435 (25%), Positives = 179/435 (41%), Gaps = 75/435 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-SLIRVAVVGCGYSGVEL 259
E + + GA EF P ++ A ++L E L R D + + +AV G G++ +E
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKRLEETLARFQSSHDENDLHIAVCGAGFTSIEY 165
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNR------EAALKVLSARKVQLVLGYFVRC 313
+ RL + V+ N+ P + EAA KVL +LV Y V
Sbjct: 166 IGELLHRLPD--FVKRFNL---------PAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNY 213
Query: 314 IRRVG-EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
++ G EF E S+ + + GA+ I+ DK F A+ ++WT G
Sbjct: 214 LKNQGVEFYTETSITEVKKGAV--ISKDK-------------------AFNANTIIWTTG 252
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
K HV + R + L P F +GD SA+ GR P T
Sbjct: 253 VKG--SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTT 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
Q++ QA A N+ A +N++ PF + +LG + LG + SF+ L G
Sbjct: 306 GQISVAQATLAASNIIAKLNNQKTSPFTYHSLGTVCSLGPTNGVAELSFMGHWKLKG--- 362
Query: 491 HSARKLAYLIRLPTD 505
K+A L R+ D
Sbjct: 363 ---HKVAPLKRIVND 374
>gi|408356209|ref|YP_006844740.1| oxidoreductase [Amphibacillus xylanus NBRC 15112]
gi|407726980|dbj|BAM46978.1| putative oxidoreductase [Amphibacillus xylanus NBRC 15112]
Length = 404
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 192/449 (42%), Gaps = 82/449 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I +LG G+ GL L+L+ + ++ ++ L+++ + L+ +G +
Sbjct: 5 KIVVLGAGYAGLTAILKLQH--AKIEQSIELTLINKHQYHYQTSWLHRNAAGSHSVNDTI 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
D+L V + V + P + + +SG YD+L++ LG
Sbjct: 63 FDLKDILDLQKVNLIEASVTDIDPKQQI-------------IKTDSGA-YPYDYLIIGLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK----LSELERRNFGKDSLIRVAVVGCGYSG 256
+E +PG E A+ +TL A R+ ++ L E + + +D ++ + G G++G
Sbjct: 109 SEIDSFQIPGLKEHAYSITTLTRAMRLHQRILTILDEYRQTSMSRD--LQFVIGGGGFTG 166
Query: 257 VELAATVSERL----EEKGI------VQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
V L ++E+L E+GI + +I E+T+ P E A++ L R+V+
Sbjct: 167 VVLLGELTEQLPILCAERGIDYRKIKLLSIEYESTVLPEFDLELGEYAMQQLENRRVEFK 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG ++ + S+K SG + ++ D L +
Sbjct: 227 LGTKIKSLN-----SNSIKIERSGIVEDLPVD-------------------------LFV 256
Query: 367 WTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G + L+ + P G+ E ++ L V G+P I+ +GD + ++D G
Sbjct: 257 WTAGVRGNHLIEQAKIPT---------MLGRVEVEQDLTVPGYPSIYVIGDVALVKDPKG 307
Query: 425 RPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGV 483
R A +A Q+A A NL ++ ++PF F+N G + +G DA GV
Sbjct: 308 RAYLPNADIAIQKAKTAVDNLLLKLSGSDEIIPFEFKNKGTIASIGAKDAI-------GV 360
Query: 484 TLDGPIGHSARKLAYLIRLPTDEHRLKVG 512
T +G R +AYL +L + ++G
Sbjct: 361 TANGR-RIFGRPVAYLKKLSDYQFLYEIG 388
>gi|114564042|ref|YP_751556.1| NADH dehydrogenase [Shewanella frigidimarina NCIMB 400]
gi|114335335|gb|ABI72717.1| NADH dehydrogenase [Shewanella frigidimarina NCIMB 400]
Length = 428
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 156/374 (41%), Gaps = 54/374 (14%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
L+D++ ++KP L+E+ G +D ++ D G ++ + ++ PS
Sbjct: 35 LIDKNTVHIWKPKLHEVAVGVIDQSIEGLQYRDHGLKNGYRYIRGAIEQCDPSTKTIQLA 94
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232
P+ G ++ +EYD LVL+LG PGA + +L+ A KL
Sbjct: 95 PVFNDEGEMIIAARN--IEYDTLVLALGGVSNSFNTPGAEKHCIFLDSLDSANLFHHKLM 152
Query: 233 E-LERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI---------VQAINVE 279
+ L + N +D L + +VG G +GVELAA V E + E G + I
Sbjct: 153 DALLQLNETQDQL-GIGIVGAGATGVELAAELHHVIESVREYGYQNISKDHLDINLIEAS 211
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
T I P A VLS V+L LG V+ + + G A+
Sbjct: 212 TKILPQLPEQVSTRAQTVLSKLGVKLHLGVQVKEVTKEGFVTAT---------------- 255
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 399
+ +A++ +W G K P V LP+ R Q + D
Sbjct: 256 -----------------GETIKANIKVWAAGVKG--PKV---FENFTQLPVTPRNQIDVD 293
Query: 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
+ + VKG I+ALGD + L SG+P+P AQ A Q AD N+ + +P PF +
Sbjct: 294 DCMRVKGIDDIYALGDCAQLILPSGKPVPPRAQAAAQMADRLYANICLKMKQQPEKPFVY 353
Query: 460 QNLGEMMILGRNDA 473
++ G ++ L R A
Sbjct: 354 KDYGSLVSLSRFSA 367
>gi|271964603|ref|YP_003338799.1| cyclic nucleotide-regulated FAD-dependent pyridine
nucleotide-disulfide oxidoreductase [Streptosporangium
roseum DSM 43021]
gi|270507778|gb|ACZ86056.1| cyclic nucleotide-regulated FAD-dependent pyridine
nucleotide-disulphide oxidoreductase [Streptosporangium
roseum DSM 43021]
Length = 441
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 115/459 (25%), Positives = 187/459 (40%), Gaps = 84/459 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ G+Y ALRL+ + + + + V+ +D ++P L E +G V+A +
Sbjct: 6 RILIVGGGYVGMYVALRLQRKLRRGEARITVVNIDSY--MTYQPFLPEAAAGNVEARHVV 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMA-----CTHGGTVLLESGLIVEYDWL 195
+L + V +GV+ P+A C H G G +EYD L
Sbjct: 64 VSLRRVLNKC--EILNGWV--------VGVD-PVARTADLCLHQG-----PGRTLEYDIL 107
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRV-----AV 249
V + G+ + +PG AE F ++E+A + D L++L+ D +R
Sbjct: 108 VFAPGSISRTLPIPGLAESGIGFKSVEEAIHLRDHVLAQLDLAESTTDRSVRAKALSFVF 167
Query: 250 VGCGYSGVELAATVSERLE---------EKGIVQAINVETT--ICPTGTPGNREAALKVL 298
VG GY+GVE A + + + G ++ + VE T I P P L+ L
Sbjct: 168 VGAGYAGVEALAELEDMARDVCRYYPTVDPGDMRWLLVEATDRILPEVGPEMGRWTLEQL 227
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
R + + LG + S +I D ++
Sbjct: 228 RGRGIDVRLG----------------TRLNSAVDGHIVLDDGTE---------------- 255
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
F+AD ++WT G KP P LPL+ + + + L V+G P +F GD +A
Sbjct: 256 -FDADTLVWTAGVKP------NPLVHTSGLPLDDKSRVKASADLIVEGFPHVFTAGDCAA 308
Query: 419 LRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ D + G AQ A +QA N+ A + R P+R G + LG +
Sbjct: 309 VPDLTKPGEMCAPNAQNAVRQARTLADNVVATLRGRARRPYRHAYAGSVATLGLHKGVAQ 368
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ G L G + +L R+PT +++V W
Sbjct: 369 ---IYGRKLRGLPAWFMHRTYHLSRIPTVNKKVRVLTDW 404
>gi|315304543|ref|ZP_07874797.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria ivanovii FSL F6-596]
gi|313627088|gb|EFR95967.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria ivanovii FSL F6-596]
Length = 403
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 180/404 (44%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ILG G+GGL T +L+ Q + +++LV++++ L+E +G ++ +
Sbjct: 3 KSKIVILGAGYGGLKTLRKLQ----QRNLDAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLEKVVNEAKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+A+ +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAYTITSVESVKKIRAHIEAQFAKWKTDSRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKKYDVPREKVRIFC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ I E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEIREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANERPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLEDFVYHEKGTVCSLGDNDA 358
>gi|150025973|ref|YP_001296799.1| NADH dehydrogenase [Flavobacterium psychrophilum JIP02/86]
gi|149772514|emb|CAL43997.1| NADH dehydrogenase [Flavobacterium psychrophilum JIP02/86]
Length = 434
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 180/419 (42%), Gaps = 74/419 (17%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P PRI I+GGGF G+ A +L +KK QV+L+D+ F+P+LY++ +G +
Sbjct: 4 PQTTLPRIVIIGGGFAGIAIAKKLR------NKKLQVVLLDKHNYHTFQPLLYQVATGGL 57
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+A IA + +Q +KD L + T ++ E G + YD+
Sbjct: 58 EAGSIAYPIRKV-----IQEYKDFYFRLTSVKEID-------TQNQKIISEIGEL-HYDY 104
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE------LERRNFGKDSLIRVA 248
LV++ G++ + T+ + + + E L + K+SLI
Sbjct: 105 LVIATGSKTNYFGNKEIERNSMAMKTIPQSLNIRSLILENFEQAVLTKDPADKNSLINFV 164
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQA----INVETTICPTGTPGNREAALKVLS----- 299
+VG G +GVELA ++E +K I+Q ++V G+R L +S
Sbjct: 165 LVGAGPTGVELAGALAEM--KKAILQKDYPDLDVSKMEINLIQSGDR--ILNTMSEKSSK 220
Query: 300 -ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ-PAIKGLES 357
A + L LG + RV ++ S N+ D + + +Q AI GL+
Sbjct: 221 AAEEFLLSLGVKIWKNVRVTNYDGRTITTNS----NLTFDTATLIWTAGVQGAAIAGLD- 275
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+K L+ VE + +N Q V GH IFA+GD +
Sbjct: 276 -------------AKSLVQKVE-------RIRVNQYNQ--------VVGHNNIFAIGDIA 307
Query: 418 ALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
++ D + P AQ A QQ + G N+ + ++PL PF++ + G M +GRN A V
Sbjct: 308 SMETDKYPQGHPMMAQPALQQGELLGENIIKLMQNKPLKPFQYHDKGSMATIGRNKAVV 366
>gi|386715194|ref|YP_006181517.1| NADH dehydrogenase [Halobacillus halophilus DSM 2266]
gi|384074750|emb|CCG46243.1| NADH dehydrogenase [Halobacillus halophilus DSM 2266]
Length = 406
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/417 (24%), Positives = 175/417 (41%), Gaps = 79/417 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P I ILG G+GG+ TA++L+ + ++ V LV++ L+E +G +
Sbjct: 2 KNPNIVILGAGYGGIITAVKLQKSLGVNE--ANVTLVNKHSYHYQTTWLHENAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D++ + + F +D V + PS+ V+LE+G ++ YD+LV+
Sbjct: 60 HTRIPIKDVINTSKINFVQDTVTEIKPSEK-------------RVMLENGDLM-YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
LG E +PG E AF ++ ++ R+ R+ E + K+ + + V G
Sbjct: 106 GLGYEAATFGIPGLKEHAFTIGSI-NSARLIRQHIEYNFAKYNNEADKKEERLNLVVGGA 164
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E ++ R+ + + V+ INVE P+ PG E A+ L
Sbjct: 165 GFTGIEFVGELANRVPQLCREYDIPREKVRIINVEA--APSALPGFDPELVEYAMNSLEG 222
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V+ +G ++ + +K + E K + +
Sbjct: 223 RGVEFKIGAMIKEV-------------------------TENKLVFE-----KDEQREEI 252
Query: 361 EADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
+ V+W G + L+ +N RG+ + L GH +F +GD +
Sbjct: 253 PTNTVVWAAGVRGNSLVEQAGFESN---------RGRTPVSDDLRPAGHDDVFIVGDCAL 303
Query: 419 L-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
L + + RP P TAQ+A Q A+ NL + D+ L PF G + LG DA
Sbjct: 304 LINEETERPYPPTAQIAIQMAEQTADNLTKLVKGDKHLEPFTPDLKGTVASLGHKDA 360
>gi|424913112|ref|ZP_18336486.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392844269|gb|EJA96792.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 421
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 186/448 (41%), Gaps = 66/448 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL----LSGEVDA 136
R+ I+GGGF GL A L+ L + ++D+ +F+P+LY++ L+ A
Sbjct: 5 RVVIVGGGFAGLQVAKDLKRL------GISITIIDKRNHHLFQPLLYQVATTVLATSDVA 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
W I F + KD LL + V+ + V L+ G + YD LV
Sbjct: 59 WPIRAVF---------RGRKDVTTLLGEVVGVDVDRRL-------VSLKDGKAIAYDTLV 102
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
L+ GA G FA LEDA + R+L +ELE +++L+ +++
Sbjct: 103 LATGARHAYFGQDGWERFAPGLKALEDATTIRRRLLLAFERAELETDPEARNALLTFSII 162
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + +++T AA ++L VL F
Sbjct: 163 GAGPTGVELAGIIAELAHRTLVEEFRSIDT------------AAARILLVEAGPRVLPVF 210
Query: 311 VRCIRRVGEFE-ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ R E A + P A D+N E P+ ++W
Sbjct: 211 PDSLSRYAEHSLAKMGVEVRTGRPVTACDENGITIGDEFVPS-----------RTIIWAA 259
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G + V ++ + G+A L V P IF +GD++ ++ G P+P
Sbjct: 260 GVQASKAAVWVGTDK------DRAGRAIVQSDLTVAQRPEIFIIGDTAFVKTGEGNPVPG 313
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
A A QQ + + A ++ +P P FR+++LG + +G + A + ++ + G
Sbjct: 314 VAPAAKQQGKYVAKVIRARLSRKPAPPNFRYKHLGNLATIGPSSAVIDFGKLQ---VKGA 370
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ L ++ L R+ V +SWL
Sbjct: 371 LAWWIWGLVHIYFLIGTRSRMAVALSWL 398
>gi|422730267|ref|ZP_16786660.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0012]
gi|315149248|gb|EFT93264.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0012]
Length = 403
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVNEKMTTFIQGTVKTIDAATQ-------------TVALEGGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSIGNTRA 358
>gi|374309547|ref|YP_005055977.1| NADH dehydrogenase (ubiquinone) [Granulicella mallensis MP5ACTX8]
gi|358751557|gb|AEU34947.1| NADH dehydrogenase (ubiquinone) [Granulicella mallensis MP5ACTX8]
Length = 459
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 103/415 (24%), Positives = 175/415 (42%), Gaps = 77/415 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PR+ I+G GFGG+ A L L V +VD+ F+P+LY++ +
Sbjct: 8 RRPRVVIVGAGFGGINAAAGLAKL------PVDVTVVDRKNHHTFQPLLYQVALAVLSPG 61
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA P + L NT + D V G + MA H ++L+SG ++ YD+L+
Sbjct: 62 DIAQPIRSILRENTNTEVIMDEVT--------GFD--MAERH---IMLKSGAVLIYDYLI 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVV 250
L+ G+ A+ A T+EDA + R+ L+E ++ G + +V
Sbjct: 109 LATGSTHSYFGKDEWAKLAPGLKTIEDATEIRRRVLLAFELAERQKLESGSHPPLNFVIV 168
Query: 251 GCGYSGVELAATVSE----------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
G G +GVELA ++S+ R + G Q + +E G+P A + L
Sbjct: 169 GGGPTGVELAGSISDIAKLYMTKDFRHIDPGTAQVLILE------GSPNILGAYPEDLQK 222
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+ V+ + VR +GA ++ ++QP + +
Sbjct: 223 KAVEQLNALGVRV--------------RTGA------------HVSDIQPGYVMVGDERV 256
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
E+ LW G + P ++ + + RG D+ L GH IF LGD +
Sbjct: 257 ESVCTLWAAGVQ------ASPLGKILGVETDRRGSVMVDDHLHPAGHSEIFVLGDLAHF- 309
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDR--PLLPFRFQNLGEMMILGRNDA 473
+ G+ +P AQ A Q +A + + + PFR+ + G+M +GR A
Sbjct: 310 EQDGKQVPGVAQPAMQMGAYAAKRIGLLLEGKGDTQKPFRYFDKGDMATIGRKAA 364
>gi|386822424|ref|ZP_10109639.1| NADH dehydrogenase, FAD-containing subunit [Joostella marina DSM
19592]
gi|386423670|gb|EIJ37501.1| NADH dehydrogenase, FAD-containing subunit [Joostella marina DSM
19592]
Length = 451
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 186/454 (40%), Gaps = 68/454 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K P + I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPSVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ I F + FF+ V + P + T+L G V YD
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFRLAEVVEIQPDSN-------------TILTNKGS-VSYD 123
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR-KLSELER-----RNFGKDSLIRV 247
+LVL+ GA + AE + + D+ + L LE+ N +D+L
Sbjct: 124 YLVLATGATTNFFGMDSVAENSLGMKDIRDSLNIRHMMLQNLEQAAITCDNKERDALTNF 183
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
+VG G +GVE+A ++E + I P P E +++
Sbjct: 184 VIVGGGPAGVEMAGALAEFCK------------YILPKDYP---EYPASIMN-------- 220
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE-----SQIFEA 362
+ I + E +++ S D N + E G E + A
Sbjct: 221 ---IYLIEAIDELLSTMSDKASSKTLKYLEDLNVKVLLNEAVSNYDGKEVTTKSDKTILA 277
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RD 421
++WT G K P N + + + +T+ L V+G+ IFA+GD +AL
Sbjct: 278 KNLIWTAGVKGQFP------NGIDGKHVVRGNRIKTNANLKVEGYENIFAIGDIAALISK 331
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+ + P AQ A QQ + G ++ IN++ + PF++++ G + +G+ A +
Sbjct: 332 ETPKGHPQVAQTAIQQGKYLGDSILNIINNKSIKPFKYKDKGSLATVGKRKAVAD---LG 388
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + +L+ + +RL VG +W
Sbjct: 389 KFKFAGYFAWLLWSVVHLMSISGFRNRLMVGFNW 422
>gi|386772391|ref|ZP_10094769.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium
paraconglomeratum LC44]
Length = 479
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 181/433 (41%), Gaps = 81/433 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGGF G L L D + +V L+D++ F+P+LY++ + ++ ++
Sbjct: 21 PHVVIVGGGFAGANAVLGLR------DARVRVTLIDRNVYKTFQPLLYQVATAGLNPGDV 74
Query: 140 APRFADL-LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI----VEYDW 194
L L +++ + V + P + V L G + YD+
Sbjct: 75 TMFLRGLSLKVPNMRYRQGEVVGVDPERKV-------------VTLNEGQRGDQELSYDY 121
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--RNFG-KDSLIRVAVV 250
LVL+ GA PGA E A P T + + DR SELER R G + V +V
Sbjct: 122 LVLANGATTTYFGTPGAEEHAMPMYTRAQSLAIRDRVFSELERSSREAGVTHDKLHVCIV 181
Query: 251 GCGYSGVELAATVSE-RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G G +GVE+A +++ R++E I + P PG L L
Sbjct: 182 GGGPTGVEIAGALADFRMQELDI---------LYPEMDPGT--------------LQLTV 218
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK-YILELQPAIKGL--------ESQIF 360
R + EF +Q AAD+ D+ +L L +K + + I
Sbjct: 219 LQRGDELLKEFSDKYRQ--------YAADELRDRGVVLRLGHGVKEVGYDHVILDDGSIL 270
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
E+D+ +W G P LP ++RG+ D+ L VKG P ++A GD +A
Sbjct: 271 ESDITIWAAGV------AIPEAVSRWGLPQDSRGRIAVDDHLQVKGMPGVYAAGDVAAQD 324
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
++ LP AQ A Q ++ A + + F + NLG M +GR+ A +
Sbjct: 325 EA----LPQLAQPAIQTGSAVAKSIAADVKGKQRPTFTYTNLGTMATIGRHAAIAEIPVL 380
Query: 481 EGVTLDGPIGHSA 493
G L G +G +A
Sbjct: 381 GG--LSGSLGWAA 391
>gi|114048517|ref|YP_739067.1| NADH dehydrogenase [Shewanella sp. MR-7]
gi|113889959|gb|ABI44010.1| NADH dehydrogenase [Shewanella sp. MR-7]
Length = 429
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 155/377 (41%), Gaps = 56/377 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIE-QCDPDAKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 QLAAVYSDSGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEQHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI---------VQAINV 278
L + + + + +VG G +GVELAA V E ++E G V I
Sbjct: 152 LLDALLQLNETQEKVSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKHHLDVHLIEA 211
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
I P A VL ++L +G V+ + R
Sbjct: 212 SPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR---------------------- 249
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQA 396
D +I + + + EA L +W G V+ P LP+ R Q
Sbjct: 250 ---DGFITQ--------DGDVIEAGLKVWAAG-------VKGPKAFQNFSKLPITPRNQV 291
Query: 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456
E D + VKGH I+ALGD + L SG+P+P AQ A Q AD N+ + + P
Sbjct: 292 EVDACMRVKGHQDIYALGDCALLILESGQPVPPRAQAAAQMADTLYENIVNRLQGKAEKP 351
Query: 457 FRFQNLGEMMILGRNDA 473
F +++ G ++ L R A
Sbjct: 352 FVYKDYGSLVSLSRFSA 368
>gi|124024083|ref|YP_001018390.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. MIT 9303]
gi|123964369|gb|ABM79125.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. MIT 9303]
Length = 503
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 184/456 (40%), Gaps = 65/456 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF G+ L + + +V L+D+ +F+P+LY++ +G V
Sbjct: 18 RRAPHVVIIGGGFAGVRACKALA------NTEVRVTLIDKRNFNLFQPLLYQVATGLVSK 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V L P D ++ + + YD+L
Sbjct: 72 GDVATPLRQLVGRQFNVQVLLGEVTQLNPQDKQ--------------IVFNNKSLSYDYL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAV 249
VL+ G+ FA P LE A + R+L +E + L V V
Sbjct: 118 VLATGSGSTYFGHEEWRSFAPPMKILEHAEEIRRRLLMAMEQAEQTPDPNARQFLQSVVV 177
Query: 250 VGCGYSGVELAATVSERLEEKGI--VQAINVETTICPTGTPGNR--EAALKVLSARKVQL 305
VG G +G E+A VSE + + +N + T PG R A ++LS
Sbjct: 178 VGAGPTGCEMAGAVSELMRNAMSREFKQLNPDQTKIYLVDPGERVLRAMPEMLSKSARTT 237
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
+ V + F+ V+ + G + + + N D Q +A V
Sbjct: 238 LESLGVEMV-----FKGRVQSMQPGEV--MISTPNGD---------------QCLQAATV 275
Query: 366 LWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
+WT G +P H+ L D L+ G+ + V GHP I +GD + R +
Sbjct: 276 IWTAGVRP--SHL---GRNLADSIGCELDKGGRIVVEPDFAVAGHPEIRVVGDLCSYRHT 330
Query: 423 SGR-PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+ + PLP A A Q F G ++ A ++ F + + G M +L R A +
Sbjct: 331 TNQTPLPGMAGPATQAGGFVGKDIAALVSGSSRPTFNWFDFGSMAVLDRVAAVAD---LR 387
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
G G IG LA+L +P E+R+ + WL
Sbjct: 388 GFKFSGGIGWMCWALAHLAFMPNPENRITLLFKWLV 423
>gi|347549703|ref|YP_004856031.1| putative NADH dehydrogenase [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982774|emb|CBW86798.1| Putative NADH dehydrogenase [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 403
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 179/404 (44%), Gaps = 57/404 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ILG G+GGL T +L+ Q + +++LV++++ L+E +G ++ +
Sbjct: 3 KSKIVILGAGYGGLKTLRKLQ----QRNLDAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ F +D V + + TV L + + YD+L+++
Sbjct: 59 LMYPLKKVVNEAKTTFIQDTVVKINKDEK-------------TVTLNANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSG 256
LG+E + + G E+AF +++E ++ + + + +D L+ + V G G++G
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+E ++ R+ E +V+ +V C EAA KVL +LV Y V
Sbjct: 166 IEFLGELTNRIPE--LVKKYDVPREKVRIFC-------MEAAPKVLPQFDAKLV-DYGVG 215
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E V +P A + S+ I E++ A ++W G +
Sbjct: 216 VLEDRG-VEFHVGKPVKEATADGVKYAESENEIREIKAAT------------IIWAAGVR 262
Query: 373 PLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPAT 430
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P T
Sbjct: 263 --------GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANERPFPPT 314
Query: 431 AQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
AQ+A QQAD A NL + + L F + G + LG NDA
Sbjct: 315 AQIAMQQADVAAVNLAKLVKGETDLEDFVYHEKGTVCSLGDNDA 358
>gi|116332990|ref|YP_794517.1| NADH dehydrogenase, FAD-containing subunit [Lactobacillus brevis
ATCC 367]
gi|116098337|gb|ABJ63486.1| NADH dehydrogenase, FAD-containing subunit [Lactobacillus brevis
ATCC 367]
Length = 403
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 175/403 (43%), Gaps = 63/403 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LGGG+ G+ L+ V DD Q++LVD++ K L+E+ +G + I
Sbjct: 4 ILVLGGGYAGMRAIKFLQREVPSDD---QIILVDKTSTHTEKTNLHEVAAGTIAPDRITY 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ V F +D V ++ V+ V L + YD+L+L+LG
Sbjct: 61 EINDVIGKR-VTFIQDEVT------NVDVDSKQ-------VTLVDHDPITYDYLILALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD---SLIRVAVVGCGYSGVE 258
+ + + GA E A P L+ + V + + E + + + + + + +AV G G++G+E
Sbjct: 107 QSETFGLKGAVENALPMDDLQTSEAVYQHI-EAKAKGYAESQDPNDLTIAVCGAGFTGIE 165
Query: 259 LAATVSERLEEKGI--------VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
L +S+ L + V + + TI P + A+K ++ +++ LG
Sbjct: 166 LLGELSQSLPKLQTRYNTPAFKVICLEMGKTILPMFDKSLADYAMKFMAKHNIEMKLG-- 223
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
A++ + + GA+ + DKN+D + A+ ++WTVG
Sbjct: 224 -----------AAITEIKPGAV--VYKDKNTDDE-----------QEHEVAANTIVWTVG 259
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPA 429
HV + R + + L ++GHP ++ +GD +A+ D S RP P
Sbjct: 260 VSG--SHVMADSGFE-----QRRNRVVVKDDLSLEGHPEVYVIGDVAAVMDPQSNRPYPT 312
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
TAQ+A A N+ + PF +++ G + L D
Sbjct: 313 TAQIALACGAHAAKNIGLMLRGHETRPFVYKSSGTVASLSDRD 355
>gi|257090331|ref|ZP_05584692.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis CH188]
gi|257422164|ref|ZP_05599154.1| oxidoreductase [Enterococcus faecalis X98]
gi|312902833|ref|ZP_07762037.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0635]
gi|422690393|ref|ZP_16748450.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0630]
gi|422705355|ref|ZP_16763157.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0043]
gi|256999143|gb|EEU85663.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis CH188]
gi|257163988|gb|EEU93948.1| oxidoreductase [Enterococcus faecalis X98]
gi|310633887|gb|EFQ17170.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0635]
gi|315157201|gb|EFU01218.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0043]
gi|315576764|gb|EFU88955.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0630]
Length = 403
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVNEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|226314341|ref|YP_002774237.1| NADH dehydrogenase [Brevibacillus brevis NBRC 100599]
gi|226097291|dbj|BAH45733.1| putative NADH dehydrogenase [Brevibacillus brevis NBRC 100599]
Length = 396
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 163/385 (42%), Gaps = 54/385 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GGL T L+L+ + ++ ++ LV++ L+E +G A
Sbjct: 4 PKILILGAGYGGLLTTLQLQKKLNYNE--AEITLVNKHNYHYITTWLHEPAAGTAPADHA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L V F K V+ + + TV L++G ++ YD+LV+ L
Sbjct: 62 RVSLDGILNKDKVNFVKGTVQAIQSEEQ-------------TVTLDNGEVLPYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD----SLIRVAVVGCGYS 255
G+EP+ + G E AF ++ +A R R+ E F + + V G G++
Sbjct: 109 GSEPETFGIEGLKEHAFSIRSI-NAVRNIREHIEYMFSKFKNEPDRMDYLTFVVGGAGFT 167
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
G+E + +RL E + + +V+ + EAA L +L+ Y + +
Sbjct: 168 GIEFCGELGDRLPE--LCREFDVDPELVKVYC---IEAAPTALPGFDPELIQ-YAINVLE 221
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
R G + P P D +L IK + V+W G +
Sbjct: 222 RKG-IVFKIGTPIKQCTP--------DGVLLNTGEEIK--------SKTVIWAAGVR--- 261
Query: 376 PHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
N+ + RG+ + DE L GH +F +GD + + + GRP P TAQ+A
Sbjct: 262 -----GNSIVEKAGFEVMRGRVKVDEYLRAPGHENVFVVGDCALIFNEEGRPYPPTAQIA 316
Query: 435 FQQADFAGWNLWAAINDRPLLPFRF 459
Q+ + G NL A I R LP +F
Sbjct: 317 VQEGETLGENLAALI--RGDLPQKF 339
>gi|307727580|ref|YP_003910793.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. CCGE1003]
gi|307588105|gb|ADN61502.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. CCGE1003]
Length = 430
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 173/394 (43%), Gaps = 41/394 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG G+ A RL + + + V L+D S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGILLATRLGNH-FAHSHEASVTLIDSSPTHIWKPMLHTIAAGTRD---VK 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL--GVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ LA+ F + +C D V T G ++LE+ V YD LVLS
Sbjct: 62 QQQVSYLAHASAHRFAWQAGEMCGLDRQRKEVLLNKVRTPEGELVLEA-RTVPYDVLVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG+ VPG + + + A + L R +D +RVA+VG G +GVE
Sbjct: 121 LGSRANDFGVPGVRQQCHFIDSQQQAEAFNSVLRARMLRAVVRDERLRVAIVGAGATGVE 180
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LAA +S LE I Q + T+ + E+ +VL++
Sbjct: 181 LAAELSRVLE---IAQGYG-DPTLRSRLSLTLLESGPRVLAS------------------ 218
Query: 319 EFEASVKQPESGAIPNIAADK-NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
F ++ + +I S + Q + E+ + +ADL++W G
Sbjct: 219 -FPPAISASTQQQLEHIGFRVLTSARVTAAQQDGFRHGENLLAKADLMVWAAG------- 270
Query: 378 VEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVA 434
V+ P+ L L N Q D TL R+FA+GD ++L ++ RPLP TAQVA
Sbjct: 271 VKAPDFMRELAGLETNRSNQIVIDATLQSTRDERVFAVGDCASLTPANHERPLPPTAQVA 330
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
QQA+ +L + P+ F F++ G ++ L
Sbjct: 331 TQQAEHLARHLPGWLAGVPMPEFAFRDFGSLVSL 364
>gi|422741924|ref|ZP_16795946.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2141]
gi|428767400|ref|YP_007153511.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis str. Symbioflor 1]
gi|315143482|gb|EFT87498.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2141]
gi|427185573|emb|CCO72797.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis str. Symbioflor 1]
Length = 403
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPSAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|256762926|ref|ZP_05503506.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T3]
gi|256684177|gb|EEU23872.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T3]
Length = 403
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 168/410 (40%), Gaps = 69/410 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQP-ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
LG ++ I+ A V Q E+G + ++A +
Sbjct: 226 LGKPIKEIK----LGAVVYQDNEAGDLAELSAKT-------------------------I 256
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-S 423
+WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 257 IWTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTET 308
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 309 NRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|117921561|ref|YP_870753.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella sp. ANA-3]
gi|117613893|gb|ABK49347.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella sp. ANA-3]
Length = 429
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 155/377 (41%), Gaps = 56/377 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIE-QCEPDAKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 QLAAVYSDSGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEKHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI---------VQAINV 278
L + + + + +VG G +GVELAA V E ++E G V I
Sbjct: 152 LLDALLQLNETQEKVSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKHHLDVHLIEA 211
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
I P A VL ++L +G V+ + R
Sbjct: 212 SPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR---------------------- 249
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQA 396
D +I + + + EA L +W G V+ P LP+ R Q
Sbjct: 250 ---DGFITQ--------DGDVIEAGLKVWAAG-------VKGPKAFQNFSKLPITPRNQV 291
Query: 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456
E D + VKGH I+ALGD + L SG+P+P AQ A Q AD N+ + + P
Sbjct: 292 EVDACMRVKGHQDIYALGDCALLILESGQPVPPRAQAAAQMADTLYENIVNRLQGKAEKP 351
Query: 457 FRFQNLGEMMILGRNDA 473
F +++ G ++ L R A
Sbjct: 352 FVYKDYGSLVSLSRFSA 368
>gi|402492087|ref|ZP_10838872.1| NADH dehydrogenase protein [Rhizobium sp. CCGE 510]
gi|401809238|gb|EJT01615.1| NADH dehydrogenase protein [Rhizobium sp. CCGE 510]
Length = 420
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 192/445 (43%), Gaps = 60/445 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWE 138
R+ I+GGGF GL A +D K P + ++D+ +F+P+LY++ + + E
Sbjct: 4 RVVIVGGGFAGLQLA--------KDLKCPNLSITIIDRRNHHLFQPLLYQVATTVLATSE 55
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA + KD LL + +GV+ + H V L+ G + YD LVL+
Sbjct: 56 IAWPIRAVFRGR-----KDVTTLL--GEVVGVD--VEKRH---VSLKGGHAIPYDTLVLA 103
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGC 252
GA FA LEDA + R+L +ELE + +++ +++G
Sbjct: 104 TGARHAYFGRDEWEPFAPGLKALEDATTIRRRLLLAFEKAELETDPHARAAMLTFSIIGA 163
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVE+A ++E + + + N++TT SAR + + G +
Sbjct: 164 GPTGVEMAGIIAELAQRTLVEEFRNIDTT-----------------SARILLVEAGPRIL 206
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ F ++ Q ++ ++ + + + + + + + + V+W G +
Sbjct: 207 PV-----FHEALSQYAERSLSSMGVEVRTGRPVTDCNEEGISIGDEFVPSRTVIWAAGVQ 261
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
V ++ G+A L V HP IF +GD+++++ +G P+P A
Sbjct: 262 ASKAAVWVGAE------MDRAGRAIVQPDLTVFEHPEIFVVGDTASVKTGAGMPVPGIAP 315
Query: 433 VAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
A QQ + + A + RP P F++++LG + +G + A + + L G I
Sbjct: 316 AAKQQGKYVAQVINARLKQRPAPPAFKYRHLGNLATIGPSSAVIDFGRLR---LKGSIAW 372
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWL 516
A++ L R+ V +SWL
Sbjct: 373 WIWGFAHIYFLIGTRSRMAVALSWL 397
>gi|331694770|ref|YP_004331009.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
gi|326949459|gb|AEA23156.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
Length = 491
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/450 (25%), Positives = 191/450 (42%), Gaps = 58/450 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+GGG+ G+YTALRL+ + + + V ++D ++P L E +G ++
Sbjct: 33 RTTRIVIVGGGYVGMYTALRLQKKLRRGEA--DVTVIDPQSHMTYQPFLPEAAAGSIEPR 90
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +L G RV + + V +A + T YD LV+
Sbjct: 91 HVVVPLRRVL--RGCHVVTGRVTSIS-HEKREVVAELAAGNEATF--------GYDVLVV 139
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVG 251
+ G+ + VPG AE F T+ +A + + LS L+ + D L+ VVG
Sbjct: 140 APGSVARTLPVPGLAEHGIAFKTVGEAIYLRNHVLSRLDAASTTTDPRLRRKLLTFLVVG 199
Query: 252 CGYSGVELAATVSERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
GY+G+E A +++ + +N E EAA +++ +V LG +
Sbjct: 200 GGYAGIEALAELADMARHASKYYENVNREDIRWVL-----VEAANRIMP--EVGPKLGRY 252
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+ R+ + + V E+ + + D + Q F+ D ++WT G
Sbjct: 253 --TVERLLDADIEVNL-ETRVVSMVDGHVELD-------------DGQSFDTDTIIWTAG 296
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-----GR 425
KP P DLP +ARG+ + L V G P +F+ GD +++ D S R
Sbjct: 297 VKP------NPMLENTDLPRDARGRVDCTAMLQVVGMPDVFSAGDCASVPDLSKDDPEAR 350
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
P +AQ A +QA G NL A I R L +R G + LG + G+ L
Sbjct: 351 TSP-SAQHAVRQAKVLGDNLVAHIRGRKLSEYRHSYAGSVASLGLYKGVAE---IYGIKL 406
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + + ++ R+PT R+++ W
Sbjct: 407 RGIVAWFMHRTYHVSRMPTWNRRVRIVFDW 436
>gi|409992041|ref|ZP_11275255.1| pyridine nucleotide-disulfide oxidoreductase [Arthrospira platensis
str. Paraca]
gi|291569629|dbj|BAI91901.1| probable NADH dehydrogenase [Arthrospira platensis NIES-39]
gi|409937093|gb|EKN78543.1| pyridine nucleotide-disulfide oxidoreductase [Arthrospira platensis
str. Paraca]
Length = 569
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 116/450 (25%), Positives = 188/450 (41%), Gaps = 70/450 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGP---MACTHGGTVLLESGLIVEYD 193
+I P + V+F + V+ G+N + HG + YD
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNVE--------GINDQYQWIDTDHGQ---------IRYD 100
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------FGKDSLIRV 247
LV++ G+ P+LD +PGAA+++ +TL+DA V + + RR + L+
Sbjct: 101 ILVIATGSRPQLDHIPGAAQYSLTLNTLQDAAVVRHHIVDRIRRAILEPEPIDRARLLTF 160
Query: 248 AVVGCGYSGVELAATVSERLEE-KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+VG G +G+ELA + ++L G + + I G+R L S R
Sbjct: 161 VIVGGGPTGIELAGGLIDQLRALLGWRRLFPLAKVILVHS--GDR--LLPNFSQR----- 211
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
+ C R + + SV NS L+ AI A ++
Sbjct: 212 --FSAYCERHLRQLGVSVWLNRR------VLRVNSQGVELDTGEAIA--------APTII 255
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
WT G + P ++L + A+G+ + L V+ HP+++A+GD + L G
Sbjct: 256 WTAGVQADHP------SQLDQISTAAKGKIIVEPILQVRDHPKVYAIGDVAFLWPEHG-- 307
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
L A A QQ + N+ + PFR+ + G+ I+ R +S +
Sbjct: 308 LSGIAPEAIQQGEAVATNILHQLRGTYPQPFRYIDKGKAAIISRYAGILSCDRLNSTGFW 367
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G + L Y LP +RL VG +W
Sbjct: 368 GWLTWLVIHLCY---LPGWRNRLTVGYNWF 394
>gi|336312520|ref|ZP_08567469.1| NADH dehydrogenase [Shewanella sp. HN-41]
gi|335864026|gb|EGM69144.1| NADH dehydrogenase [Shewanella sp. HN-41]
Length = 421
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 155/385 (40%), Gaps = 56/385 (14%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 18 WGGSDVVDVCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ- 76
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + + GG +LLE I EYD+LVL+LG GA E +LE
Sbjct: 77 CEPDAKIIQLAAVYSDGGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEEHCIFLDSLE 135
Query: 223 DACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI------- 272
+A KL + + + + +VG G +GVELAA V E ++E G
Sbjct: 136 NANLFHHKLLDALLQLNETQERVSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKHH 195
Query: 273 --VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 330
V I I P A VL ++L +G V+ + R
Sbjct: 196 LDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR-------------- 241
Query: 331 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDL 388
D +I + + + EA L +W G V+ P L
Sbjct: 242 -----------DGFITQ--------DGDVIEAGLKVWAAG-------VKGPKAFQNFTKL 275
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P+ +R Q E D + VKGH I+ALGD + L SG+ +P AQ A Q AD N+
Sbjct: 276 PITSRNQVEVDACMRVKGHQDIYALGDCALLILESGQAVPPRAQAAAQMADTLFSNIVNR 335
Query: 449 INDRPLLPFRFQNLGEMMILGRNDA 473
+ + F +++ G ++ L R A
Sbjct: 336 LQGKSEKAFEYKDYGSLVSLSRFSA 360
>gi|220911996|ref|YP_002487305.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrobacter chlorophenolicus A6]
gi|219858874|gb|ACL39216.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Arthrobacter chlorophenolicus A6]
Length = 474
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/464 (24%), Positives = 198/464 (42%), Gaps = 78/464 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGG+ GLY AL+L+ + + V +VD ++P L E+ G ++A
Sbjct: 1 MLVVGGGYVGLYVALKLQKKI--ANAGGIVTVVDPLPYMTYQPFLPEVAGGNIEARHAVV 58
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L + + + RV + DH +A + GG V Y +VL+ GA
Sbjct: 59 SHRKHLKQS--ELIQGRVTAI---DHANRTAVVAPSDGGETFE-----VPYFDVVLAAGA 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG--------KDSLIRVAVVGCG 253
+ + G A+ T+E+A + K+ LER G + + VVG G
Sbjct: 109 ITRTFPIKGLADKGIGLKTIEEAVALRNKV--LERIELGSTMTDPAARAKALTFVVVGGG 166
Query: 254 YSGVELAATVSE----------RLEEKGIVQAINVETT--ICPTGTPGNREAALKVLSAR 301
++G+E + + R++++ V+ + VE I P T E ++ L +R
Sbjct: 167 FAGIECITEMEDMARAAVRNNPRVKQEE-VRFVLVEAMGRIMPEVTASQAEWVVEHLRSR 225
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
++++L N + D S + L+L +Q FE
Sbjct: 226 GIEVLL--------------------------NTSLD--SAEGALKLINLPDKTPAQEFE 257
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI----FALGDSS 417
AD ++WT G + P R D PL RG+ L + G I +A GD S
Sbjct: 258 ADTLVWTAGVQ------ANPMVRSTDFPLEPRGRVRVLPDLRIGGDEGIVENAWAAGDIS 311
Query: 418 ALRDSSGRPLP-----ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
A+ D +G+ LP AQ A +QA NLWA+ D+PL ++ +NLG + G
Sbjct: 312 AVPDLTGKGLPDGTCVPNAQHALRQAKRLAKNLWASRWDKPLKDYKHKNLGAVAGFGEWK 371
Query: 473 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + + + L GP+ A + + + +PT E + +V ++W+
Sbjct: 372 GVANINLLGRIGLKGPLAWLAHRGYHGMAMPTFERKFRVILNWI 415
>gi|256619528|ref|ZP_05476374.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ATCC 4200]
gi|307275990|ref|ZP_07557123.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2134]
gi|421514083|ref|ZP_15960787.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29212]
gi|256599055|gb|EEU18231.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ATCC 4200]
gi|306507320|gb|EFM76457.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2134]
gi|401672813|gb|EJS79267.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29212]
Length = 403
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGTVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|408371469|ref|ZP_11169234.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
gi|407743059|gb|EKF54641.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
Length = 435
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 186/464 (40%), Gaps = 88/464 (18%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ K + I+GGGF G+ A L+ + +V ++D++ +F+P+LY++ +G +
Sbjct: 2 NNKPKKTVIIGGGFAGITAANNLK------NSNTEVTIIDKANHHLFQPLLYQVATGALS 55
Query: 136 AWEIA-PRFADLLANTGVQFFKDRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+IA P A L N+ ++ VK + P HL L +G + +D
Sbjct: 56 PGDIAAPIRAILGKNSKIRVVLGEVKKIHPRKKHLS--------------LVNGRKIPFD 101
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----V 247
LVL+ GA+ E A T+ DA +V +R L LE +D R
Sbjct: 102 QLVLAPGAQYNYFGNEEWQEHAPGLKTISDALKVRERILQSLEEAEQLQDPQQRQMHLTY 161
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
++G G +GVE+A ++E + G +E +++ +L
Sbjct: 162 VIIGGGPTGVEMAGAIAE------------IAKRTMRNGFKNVKEEEIRIFLVEAAPNIL 209
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY------ILELQPAIK------GL 355
F P DK D +L P +K L
Sbjct: 210 NGF----------------------PEPLGDKGKDMLEELGVKVLRGTPVVKIERDTVHL 247
Query: 356 ESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFAL 413
+ + ++W G K PLL ++ +RL G+ + L + G+P IF L
Sbjct: 248 KVGSIHSSNIIWAAGIKASPLLDSLQVEQDRL--------GRVFVNGDLSIPGYPDIFVL 299
Query: 414 GDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRND 472
GD++ +D SG+PLPA A VA QQ + G L L P FR+ + G M +G
Sbjct: 300 GDAAHFKDPSGKPLPALASVARQQGIYLGKQLARKEKGNYLPPHFRYIDKGTMATIGTAK 359
Query: 473 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
A + + G+ G +++ L +R+ V V W+
Sbjct: 360 AVAN---IRGLKFSGFFAWVLWSTIHILLLIGFRNRINVFVEWV 400
>gi|345011402|ref|YP_004813756.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces violaceusniger Tu 4113]
gi|344037751|gb|AEM83476.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces violaceusniger Tu 4113]
Length = 439
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/475 (24%), Positives = 195/475 (41%), Gaps = 97/475 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GF G A L + ++L++ ++ F++ P+L E+ +G ++ ++
Sbjct: 5 RIVIVGAGFAGYQAARELSRTL---RGAADIVLINPNDYFLYLPLLPEVAAGVLEPRRVS 61
Query: 141 PRFADLLANT--------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
L + GV RV P G +G MA Y
Sbjct: 62 VSLTGTLPHVRLVLGEVHGVDLDARRVSWRDPD---GRSGEMA----------------Y 102
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA--- 248
D L+LS+G+ KL +PG AE A F + +A + D ++E +D R A
Sbjct: 103 DRLILSVGSVNKLLPIPGVAEHAHGFRGMPEALFLRDHVTRQIEMSGTSEDPRERAARRT 162
Query: 249 --VVGCGYSGVELAAT---VSERLEEKGIVQA---------INVETTICPTGTPGNREAA 294
VVG GY+G E+AA ++ L K +++ + P A
Sbjct: 163 FVVVGAGYTGTEVAAHGVLFTDSLARKNTTLRDAPRPRWLLLDIAPRVLPELDKKLSRTA 222
Query: 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354
+VL R V++ +VK+ S ++
Sbjct: 223 DRVLRKRGVEI-------------RTRTTVKEATS--------------------EGVRL 249
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFAL 413
+ + + ++W VG +P P VE L L RG+ D+ L V GHP + A
Sbjct: 250 DDGEFIDTRSLIWCVGVRPD-PLVE-------QLGLATERGRLRVDQYLAVPGHPEVLAC 301
Query: 414 GDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
GD++A+ D + G+ P TAQ A +Q A N+ AA+ P++ +LG + LG
Sbjct: 302 GDAAAVPDLTRPGQFTPMTAQHAHRQGKVAAHNVLAALGRGAPKPYKHHDLGFTVDLGGA 361
Query: 472 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVAL 526
AA P + L GPI ++ + +L+ +P + R++V WL + + A+
Sbjct: 362 QAAADPLHIP---LSGPIANAVTRGYHLMAMPGN--RIRVAADWLLDAVLPRQAV 411
>gi|257416433|ref|ZP_05593427.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ARO1/DG]
gi|257158261|gb|EEU88221.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ARO1/DG]
Length = 403
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/409 (22%), Positives = 165/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSERLEEKGIVQAINVE----------TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E ++ + ++ + T + P +++L + L+
Sbjct: 166 IELLGSLVENKQKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|29376564|ref|NP_815718.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis V583]
gi|227520174|ref|ZP_03950223.1| NADH dehydrogenase [Enterococcus faecalis TX0104]
gi|227555392|ref|ZP_03985439.1| NADH dehydrogenase [Enterococcus faecalis HH22]
gi|229545360|ref|ZP_04434085.1| NADH dehydrogenase [Enterococcus faecalis TX1322]
gi|229549605|ref|ZP_04438330.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29200]
gi|255975463|ref|ZP_05426049.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T2]
gi|256853571|ref|ZP_05558936.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis T8]
gi|256956507|ref|ZP_05560678.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis DS5]
gi|256961514|ref|ZP_05565685.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Merz96]
gi|256962660|ref|ZP_05566831.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis HIP11704]
gi|257079429|ref|ZP_05573790.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis JH1]
gi|257082184|ref|ZP_05576545.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis E1Sol]
gi|257084802|ref|ZP_05579163.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Fly1]
gi|293385202|ref|ZP_06631021.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis R712]
gi|293388166|ref|ZP_06632688.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis S613]
gi|294780334|ref|ZP_06745703.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
PC1.1]
gi|300860301|ref|ZP_07106388.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TUSoD Ef11]
gi|307270279|ref|ZP_07551587.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4248]
gi|307272751|ref|ZP_07553998.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0855]
gi|307277721|ref|ZP_07558807.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0860]
gi|307287856|ref|ZP_07567889.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0109]
gi|307295828|ref|ZP_07575660.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0411]
gi|312900856|ref|ZP_07760150.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0470]
gi|312908287|ref|ZP_07767251.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 512]
gi|312910641|ref|ZP_07769482.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 516]
gi|312951208|ref|ZP_07770110.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0102]
gi|384513624|ref|YP_005708717.1| NADH dehydrogenase [Enterococcus faecalis OG1RF]
gi|384519055|ref|YP_005706360.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis 62]
gi|397700286|ref|YP_006538074.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis D32]
gi|422686731|ref|ZP_16744923.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4000]
gi|422692667|ref|ZP_16750682.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0031]
gi|422698242|ref|ZP_16756159.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1346]
gi|422699909|ref|ZP_16757768.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1342]
gi|422703824|ref|ZP_16761641.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1302]
gi|422711503|ref|ZP_16768432.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0027]
gi|422712444|ref|ZP_16769212.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309A]
gi|422716524|ref|ZP_16773227.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309B]
gi|422725578|ref|ZP_16782037.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0312]
gi|422732632|ref|ZP_16788963.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0645]
gi|422735686|ref|ZP_16791952.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1341]
gi|424678313|ref|ZP_18115153.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV103]
gi|424679985|ref|ZP_18116796.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV116]
gi|424683371|ref|ZP_18120122.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV129]
gi|424688159|ref|ZP_18124775.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV25]
gi|424691075|ref|ZP_18127602.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV31]
gi|424692548|ref|ZP_18129035.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV37]
gi|424696059|ref|ZP_18132428.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV41]
gi|424702043|ref|ZP_18138206.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV62]
gi|424704264|ref|ZP_18140366.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV63]
gi|424707191|ref|ZP_18143176.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV65]
gi|424718770|ref|ZP_18147999.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV68]
gi|424722235|ref|ZP_18151299.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV72]
gi|424722990|ref|ZP_18152010.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV73]
gi|424726406|ref|ZP_18155070.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV81]
gi|424740540|ref|ZP_18168922.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV85]
gi|424749898|ref|ZP_18177975.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV93]
gi|430356491|ref|ZP_19424998.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis OG1X]
gi|430368125|ref|ZP_19428054.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis M7]
gi|29344028|gb|AAO81788.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis V583]
gi|227072346|gb|EEI10309.1| NADH dehydrogenase [Enterococcus faecalis TX0104]
gi|227175506|gb|EEI56478.1| NADH dehydrogenase [Enterococcus faecalis HH22]
gi|229305270|gb|EEN71266.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29200]
gi|229309567|gb|EEN75554.1| NADH dehydrogenase [Enterococcus faecalis TX1322]
gi|255968335|gb|EET98957.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T2]
gi|256710514|gb|EEU25557.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis T8]
gi|256947003|gb|EEU63635.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis DS5]
gi|256952010|gb|EEU68642.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Merz96]
gi|256953156|gb|EEU69788.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis HIP11704]
gi|256987459|gb|EEU74761.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis JH1]
gi|256990214|gb|EEU77516.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis E1Sol]
gi|256992832|gb|EEU80134.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Fly1]
gi|291077535|gb|EFE14899.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis R712]
gi|291082406|gb|EFE19369.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis S613]
gi|294452598|gb|EFG21031.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
PC1.1]
gi|295113303|emb|CBL31940.1| NADH dehydrogenase, FAD-containing subunit [Enterococcus sp. 7L76]
gi|300849340|gb|EFK77090.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TUSoD Ef11]
gi|306496159|gb|EFM65738.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0411]
gi|306501001|gb|EFM70308.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0109]
gi|306505600|gb|EFM74784.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0860]
gi|306510365|gb|EFM79388.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0855]
gi|306513333|gb|EFM81957.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4248]
gi|310625701|gb|EFQ08984.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 512]
gi|310630742|gb|EFQ14025.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0102]
gi|311289017|gb|EFQ67573.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 516]
gi|311291955|gb|EFQ70511.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0470]
gi|315028576|gb|EFT40508.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4000]
gi|315034606|gb|EFT46538.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0027]
gi|315152612|gb|EFT96628.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0031]
gi|315159460|gb|EFU03477.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0312]
gi|315161449|gb|EFU05466.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0645]
gi|315164742|gb|EFU08759.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1302]
gi|315167572|gb|EFU11589.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1341]
gi|315171632|gb|EFU15649.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1342]
gi|315173217|gb|EFU17234.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1346]
gi|315575047|gb|EFU87238.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309B]
gi|315582473|gb|EFU94664.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309A]
gi|323481188|gb|ADX80627.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis 62]
gi|327535513|gb|AEA94347.1| NADH dehydrogenase [Enterococcus faecalis OG1RF]
gi|397336925|gb|AFO44597.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis D32]
gi|402351641|gb|EJU86521.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV103]
gi|402354994|gb|EJU89778.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV116]
gi|402361868|gb|EJU96414.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV25]
gi|402362802|gb|EJU97317.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV31]
gi|402365051|gb|EJU99479.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV129]
gi|402370608|gb|EJV04811.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV62]
gi|402377942|gb|EJV11828.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV37]
gi|402378880|gb|EJV12708.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV41]
gi|402380311|gb|EJV14071.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV68]
gi|402382353|gb|EJV16020.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV63]
gi|402385476|gb|EJV19014.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV65]
gi|402389565|gb|EJV22958.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV72]
gi|402399538|gb|EJV32405.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV81]
gi|402400307|gb|EJV33142.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV73]
gi|402401797|gb|EJV34540.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV85]
gi|402407227|gb|EJV39760.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV93]
gi|429514298|gb|ELA03850.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis OG1X]
gi|429516438|gb|ELA05929.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis M7]
Length = 403
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|422870155|ref|ZP_16916653.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1467]
gi|329568425|gb|EGG50232.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1467]
Length = 403
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 167/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LV+++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVNRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKSAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+A L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRAMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|217974378|ref|YP_002359129.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS223]
gi|217499513|gb|ACK47706.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella baltica OS223]
Length = 429
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 156/385 (40%), Gaps = 56/385 (14%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDVVDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGDIE-Q 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LLE I +YD+LVL+LG GA E +LE
Sbjct: 85 CDPDAKSIQLAAVYNDEGELLLEQRQI-DYDFLVLALGGVSNSFNTLGADEHCIFLDSLE 143
Query: 223 DACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI------- 272
+A KL + + + + +VG G +GVELAA V E ++E G
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGAGATGVELAAELHHVIESVKEYGYLNIAKHH 203
Query: 273 --VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 330
V I I P A VL ++L +G V+ + R
Sbjct: 204 LDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR-------------- 249
Query: 331 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDL 388
D +I + + + +A L +W G V+ P L
Sbjct: 250 -----------DGFITQ--------DGDVIKAGLKVWAAG-------VKGPKAFQNFTKL 283
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P+ R Q E D+ + VKGH I+A+GD + L SSG+P+P AQ A Q AD N+
Sbjct: 284 PITPRNQVEVDDCMRVKGHQDIYAVGDCALLIQSSGQPVPPRAQAAAQMADTLFDNIVNR 343
Query: 449 INDRPLLPFRFQNLGEMMILGRNDA 473
+ +P F +++ G ++ L R A
Sbjct: 344 LQGKPEKAFIYKDYGSLVSLSRFSA 368
>gi|336114848|ref|YP_004569615.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 2-6]
gi|335368278|gb|AEH54229.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 2-6]
Length = 411
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 175/414 (42%), Gaps = 71/414 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP++ ILG G+GGL T RL+ + + + + LV++++ L+E +G +
Sbjct: 7 EKPKVVILGAGYGGLMTVTRLQKQLAKGE--ADITLVNKNDYHYETTWLHEASAGTLHHD 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ ++L VQF + VK + ++ V L+ G + YD+LV+
Sbjct: 65 RVRYPIQNVLNKNKVQFKQAEVKRINKDANI-------------VDLKDGEELPYDYLVI 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCG 253
+LG+ + + G E F + + A + ++R+ R N D+ + + V G G
Sbjct: 112 ALGSNAETFGIEGLKEHTFSITDVSAAQKIREHIERQFDAYRRENDKDDNRLTIVVGGAG 171
Query: 254 YSGVELAATVSERL----EEKGI----VQAINVETT--ICPTGTPGNREAALKVLSARKV 303
++G+E + R+ +E GI V+ +++E+ + P + AL L ++ V
Sbjct: 172 FTGIEFLGELVNRIPALCKEYGIPRDKVRIVSIESNPIVLPQFDRELVDYALSYLESKGV 231
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ + G + KG E +A
Sbjct: 232 EFHIGTAVKKATKDGVWACK-----------------------------KGGEPYEIKAG 262
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS-ALR 420
V+W+ G + N + D RG+ + L V GH +F +GD + +
Sbjct: 263 TVIWSAGVR---------GNSVIDASGFETVRGRVKVKPDLTVPGHENVFVIGDCALIIN 313
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A Q + NL I+ + L F F + G + LG ++A
Sbjct: 314 KDTNRPYPPTAQMAMQHGEVCARNLLKKIHGEESLEAFTFNDKGTVCSLGEDNA 367
>gi|345022018|ref|ZP_08785631.1| NADH dehydrogenase [Ornithinibacillus scapharcae TW25]
Length = 403
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/413 (24%), Positives = 176/413 (42%), Gaps = 76/413 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPRI +LG G+ G+ T +L + ++ +++LV++ L+E+ +G ++ +
Sbjct: 4 KPRIVVLGAGYAGMMTTKKLIKNLTPEE--AEIVLVNKHNYHYQTTWLHEVAAGTINQNQ 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D+++ V+ D V + D+ V+LE+ ++ YD+LV++
Sbjct: 62 VRIMIKDIISPNRVRLIYDTVVKIDQDDN-------------RVILENSELI-YDYLVIA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD-----SLIRVAVVGCG 253
LG E + G E AF + E + ++ R+ E + F +D S + + V G G
Sbjct: 108 LGYETNTFGIKGMDEHAFFIESFE-SSQLIREHIEYQFAKFHQDPNADESSLTILVGGGG 166
Query: 254 YSGVELAATVSERLE--------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKV 303
++G+E + ER+ ++G + INVE +I PT A K L R
Sbjct: 167 FTGIEFIGELVERVPKLCKKYDIDRGKAKIINVEAAPSILPTFDKELVSYARKSLQERGA 226
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
Q++ G + + G I G ++++ +A
Sbjct: 227 QILEGTKINECTKEG--------------------------------FIVGEDNELIKAG 254
Query: 364 LVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALR 420
V+WT G K P+L N +L +G+ + L G IF +GD + +
Sbjct: 255 TVVWTGGVKASPVL------TNSGFEL---TKGRFTVNGDLRAPGRDNIFVIGDCAWVMN 305
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ A Q A N+ + I+ PL F F + G + LG DA
Sbjct: 306 KLEGRPYPPTAQAAMQHASTCANNIRSLIHHEPLEEFVFSDKGTVASLGVTDA 358
>gi|170739548|ref|YP_001768203.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. 4-46]
gi|168193822|gb|ACA15769.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium sp. 4-46]
Length = 465
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 174/405 (42%), Gaps = 42/405 (10%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD I I+GGG GL A +L + + K+ Q+ LV+++ ++KP L+E+ +G +
Sbjct: 28 PDPSLHHIVIVGGGAAGLELATKLGDTLGRG-KQAQITLVERNRTHIWKPHLHEVAAGTM 86
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYD 193
D A D LA F+ R+ + + +A ++ + V YD
Sbjct: 87 DVGRDA---VDYLAQASDHHFRYRIGEMTGLNRADREIYLAASYDAEGQEVTPARAVPYD 143
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VA 248
LV+++G+ PG EFA T E A R ++L R + +R V
Sbjct: 144 TLVIAVGSTGNDFGTPGVNEFAISLDTQEQAVRFHQRLVNRFIRAHAQPEPVRPGQLHVT 203
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
++G G +G ELAA + R + + ++ I P +R+ + ++ A +
Sbjct: 204 IIGAGATGTELAAEL-HRTTRQVVAYGLD---RIDP-----DRDLKITLVEAAE------ 248
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLW 367
R + A V + + + + D + +++++P + + ++LV+W
Sbjct: 249 ------RILPAVPARVAKGAAQLLEGLGIDVRTSARVVQVRPDGVALADGDFIPSELVVW 302
Query: 368 TVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSG 424
G V+ P+ + L + Q TL IFA+GD + L S
Sbjct: 303 AAG-------VKAPDFLKNIDGLETSRNNQLVVTPTLQTTSDQNIFAIGDCAFLISPSDN 355
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
+P+P AQ A QQA + + RPL PFR+++ G ++ LG
Sbjct: 356 KPVPPRAQAAHQQASHVVAQIRRRLTGRPLDPFRYRDFGSLVSLG 400
>gi|117929109|ref|YP_873660.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acidothermus cellulolyticus 11B]
gi|117649572|gb|ABK53674.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acidothermus cellulolyticus 11B]
Length = 440
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 116/454 (25%), Positives = 198/454 (43%), Gaps = 71/454 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG+ G Y ALRLE + + V L+D ++P L E +G ++ +
Sbjct: 4 PRIVIVGGGYVGTYAALRLERALRPGEA--NVTLIDPQSYMTYQPFLPEAAAGNLEPRHV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L T + RV + ++ P H G +EYD LV+S+
Sbjct: 62 VVPLRRVLRRT--RILNGRVTAVQHANRRLTFAP----HVG-----PAAELEYDILVMSV 110
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCG 253
G+ + +PG AE F T+ +A + + L++L+ D+ +R VG G
Sbjct: 111 GSIARTLPIPGLAEVGIGFKTVGEAIFLRNHVLAQLDIAASTDDAALRRRALTFVFVGGG 170
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR-----EAALKVLSARKVQLVLG 308
Y+GVE A + + + P +P + EA ++L +V LG
Sbjct: 171 YAGVEALAELEDMARDA---------CRSYPNVSPADMRWILVEATDRILP--EVSRELG 219
Query: 309 -YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y + +RR G E ++ A+ D++I+ + + F+AD ++W
Sbjct: 220 AYTIAELRRRG-IEVRLQTRLESAV---------DRHIVLS-------DGEEFDADTLVW 262
Query: 368 TVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
T G + PL+ H DLP + + + +L V+G +A GD +A+ D + +
Sbjct: 263 TAGVRAHPLITHT--------DLPRDEKDRLRATASLRVEGVDDAWAAGDCAAVPDLT-K 313
Query: 426 PLPA----TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
P PA +AQ A +Q G N+ A++ RP+ +R G + LG + +
Sbjct: 314 PQPALCGPSAQHAVRQGKLLGDNIVASLRGRPVRDYRHAYAGSVASLGLHKGVAQ---IY 370
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
GVT+ G + +L R+PT +++V W
Sbjct: 371 GVTMRGFPAWFVHRTYHLSRIPTFNRKVRVVADW 404
>gi|146343575|ref|YP_001208623.1| NADH dehydrogenase FAD-containing subunit transmembrane protein
[Bradyrhizobium sp. ORS 278]
gi|146196381|emb|CAL80408.1| Putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. ORS 278]
Length = 424
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/464 (24%), Positives = 190/464 (40%), Gaps = 61/464 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 11 VVIVGAGFGGLEATYRLAG------APVRITLIDRRNHHLFQPLLYQVATASLATSEIAW 64
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L+ +DR ++ L N G VLL+ G V YD LVL+ GA
Sbjct: 65 PIRSLM--------RDRPEVTT----LFANVKGVDKAGRRVLLDDGADVSYDTLVLATGA 112
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVA-----VVGCGYS 255
FA TLEDA + R+ L ER D R A ++G G +
Sbjct: 113 RHAYFGHDEWEPFAPGLKTLEDATTLRRRILVAFERAEREIDPARRAAWMTFVIIGAGPT 172
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
GVELA T++E T+ P + + + ++VL R
Sbjct: 173 GVELAGTIAE-----------MARATLPPD---------FRSIDTHEARVVL--IEAGPR 210
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP-- 373
+G F + ++ +I + + + E + V+W G +
Sbjct: 211 VLGGFPEDLSAYTQKSLESIGVEVVLGQPVTECTADNVVYGGRSVATRTVIWAAGVRASR 270
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
+ P +R G+ + L V GHP IFA+GD+ + G+P+P A
Sbjct: 271 AAEWLGAPADRA--------GRLQVAPDLTVPGHPEIFAIGDTVTVPAWDGKPVPGIAPA 322
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A Q+ + + A + + L PFR+ ++G + +G+ A + +++ L G +
Sbjct: 323 AKQEGRYVAQAIKARLAGQALPPFRYHHVGSLAQIGKRLAVIDFGWIK---LRGALAWWI 379
Query: 494 RKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA--LLQSTLTKVL 535
LA++ L +RL V +SWL A D A L+ +KV+
Sbjct: 380 WGLAHIYFLIGLRNRLSVALSWLWIHARDQRAARLITQGSSKVM 423
>gi|392380621|ref|YP_005029817.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Azospirillum brasilense Sp245]
gi|356875585|emb|CCC96323.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Azospirillum brasilense Sp245]
Length = 453
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/413 (26%), Positives = 172/413 (41%), Gaps = 67/413 (16%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P +P + I+G GFGGL A L +V ++D++ +F P+LY++ + +
Sbjct: 10 PVDSRPHVVIVGAGFGGLACAEALGG------TNIRVTIIDRNNYHLFVPLLYQVATAAL 63
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLI 189
+IA ++ S H ++ M G V L G
Sbjct: 64 SPADIAEPIRRIV-----------------SRHPNIDVVMGEVTGIDRTAKRVELADGSF 106
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKD-----S 243
V YD LVL+ G+ AE A T+E+A R+ R L E+ +D +
Sbjct: 107 VPYDRLVLATGSSYSYFGHDDWAEIAPGLKTIENARRIRARLLMNFEQAEMCEDPARQKA 166
Query: 244 LIRVAVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR 301
L+ VVG G +GVE+A V+E R + I+ T EA ++LS
Sbjct: 167 LMTTIVVGGGPTGVEMAGAVAELARFTLARDFRRIDPRTARVLL-----VEAGPRILSTF 221
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
L G + R R++ E V + + + + P + +
Sbjct: 222 PDDL--GQYAR--RKLEELGVVVL---------------TGQAVESITPEGATVGGRFIP 262
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
A ++W G K P + + G+ D + V G P ++ALGD++AL
Sbjct: 263 AGAIVWGAGVK------ASPAGSWLGVETDRSGRIPVDADMAVPGVPDVYALGDTAALAG 316
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAA-INDRPLLPFRFQNLGEMMILGRNDA 473
G+PLP AQVA QQ + G L A+ + +PL PFRF+N G I+GR+ A
Sbjct: 317 DDGKPLPGLAQVAKQQGEHLGGGLEASLLRGQPLEPFRFRNRGNTAIVGRSAA 369
>gi|315606433|ref|ZP_07881448.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella buccae
ATCC 33574]
gi|315251839|gb|EFU31813.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella buccae
ATCC 33574]
Length = 432
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 166/415 (40%), Gaps = 74/415 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ R+ I+GGG GL ALRL +Q V+LVD++ F P++Y++ S ++
Sbjct: 8 NNQKRVAIVGGGLAGLQLALRLRHTDFQ------VVLVDKNNYNQFPPLIYQVASAGLEP 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I+ F L N +F+ L +D ++ H YD+LV
Sbjct: 62 SSISFPFRRLFQNQRNFYFRMGEALSVDNDERVLHTSFGTLH-------------YDYLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
L+ GA A P T+ +A ++ + +E E + SL+ + +V
Sbjct: 109 LAAGATTNFFGNVNIEREALPMKTVTEAMKLRNTVLQNLEKAETEDDEHHRQSLLNIVIV 168
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G SGVE+A ++E ++ T+ P P L A ++ + Y
Sbjct: 169 GGGPSGVEIAGALAE------------MKRTVVPRDYPD--------LDANRMNI---YL 205
Query: 311 VRCIRRV---------GEFEASVKQPESGAIPN-IAADKNSDKYILELQPAIKGLESQIF 360
V RR+ E +++ +P D S + +L +I
Sbjct: 206 VNADRRLLKSMDSASSARAEKDLREMGVNVMPGYTVVDCRSGQVMLSDGSSI-------- 257
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+A V+W G + P + H G+ TD VKG ++A+GD S +
Sbjct: 258 DARTVIWVSGIRASTIGGIPQTSIGHA------GRVLTDRFNNVKGMAGVYAIGDQSLVE 311
Query: 421 DSSGRPL--PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ PL P AQVA QQA NL + PF ++NLG M +GR A
Sbjct: 312 GDADYPLGHPQLAQVAIQQATNVAENLMRINRNEQPRPFTYRNLGTMATIGRKRA 366
>gi|220924342|ref|YP_002499644.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium nodulans ORS 2060]
gi|219948949|gb|ACL59341.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium nodulans ORS 2060]
Length = 437
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 175/401 (43%), Gaps = 42/401 (10%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ RI ++GGG GL A +L + K+ ++ L+D+S ++KP+L+E+ +G +D
Sbjct: 4 RHRIVVVGGGAAGLELATKLGDR-YGKRKQAEITLIDRSRTHIWKPLLHEVAAGSMD--- 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL-LESGLIVEYDWLVL 197
+ D L + F+ R+ + D +A +H + + YD LV+
Sbjct: 60 VGYHAVDYLHHAHAHHFRYRIGEMTGLDRDRRVVKLAASHDAEGREVTPAREIPYDTLVI 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGC 252
++G+ PG E+A T + A R R+L R ++ +R VAV+G
Sbjct: 120 AVGSTSNDFGTPGVKEYAIALDTPDQAERFHRRLVNAMIRAHVQEGPVRPGQLHVAVIGA 179
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +G EL A + V A ++ I P +++ L ++ A R
Sbjct: 180 GATGTELVAELHRTTRH---VAATGLD-RIDP-----DKDLKLTLIEAAD---------R 221
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGS 371
+ V E + Q + I + + + E++P ++ + +++LV+W G
Sbjct: 222 ILPAVPE---RLSQDVMALLAGIGVEVRTRARVTEVRPDGVQLADGSFIQSELVVWAAG- 277
Query: 372 KPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLP 428
V P+ L L Q TL IFA+GD + L D ++ +P+P
Sbjct: 278 ------VRAPDVLRDLGGLETTRNNQLVVTPTLQTTRDENIFAIGDCAHLIDAATQKPIP 331
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
AQ A QQA + + +PL+PFR+++ G ++ LG
Sbjct: 332 PRAQAAHQQATHLLKQMPKRLAGQPLVPFRYRDFGSLVSLG 372
>gi|422721714|ref|ZP_16778297.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0017]
gi|315031038|gb|EFT42970.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0017]
Length = 403
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQAINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSTDQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|418461336|ref|ZP_13032413.1| putative oxidoreductase [Saccharomonospora azurea SZMC 14600]
gi|359738612|gb|EHK87495.1| putative oxidoreductase [Saccharomonospora azurea SZMC 14600]
Length = 452
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 116/461 (25%), Positives = 202/461 (43%), Gaps = 80/461 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI ++GGGF G+ RLE L+ ++ + LV ++ P+L ++ SG +
Sbjct: 2 EPPRILVVGGGFAGVECVRRLERLLSPEEAS--ITLVAPRNYQLYLPLLPQVASGMLTPQ 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVE-YDWL 195
+A LL T + P LGV+ C G L + +E YD+L
Sbjct: 60 SVAVSLRRLLRRTRI----------APGAALGVDLDTKVCVVEG---LSGRMRIEPYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----RRNFGKDSLIRVAV 249
VL+ G+ + +PG AE A TL +A + D +++L+ + K++ ++ V
Sbjct: 107 VLAPGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAAPEHEEKEARLQFVV 166
Query: 250 VGCGYSGVELAATVSE----------RLEEKGIV-QAINVETTICPTGTPGNREAALKVL 298
VG GYSG E AA++ L+ + I +++ + P +AA+ +L
Sbjct: 167 VGGGYSGTETAASLHRLTAAAVDRYPGLDPRAIKWHLVDIAPRLMPELGESLGDAAMNLL 226
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
R + + LG ++ + AD +K + +
Sbjct: 227 RQRGIDISLGV---------------------SVAEVQADT------------VKLTDGR 253
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
+ ++WT G +P P D+ RG+ + E + V G +FA+GD++A
Sbjct: 254 VLPCHTLIWTAGVQP------SPLIGTLDVE-TVRGRVKVTEYMDVPGRHGVFAVGDAAA 306
Query: 419 LRDSS---GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ D S G P TAQ A +Q N+ AA+ PL P+R +++G ++ LG DA
Sbjct: 307 VPDPSKGDGAVCPPTAQHAQRQGKTVARNVVAALRGYPLQPYRHRDMGLVVDLGGADAVA 366
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+P GV+L G + + +++ L T + +V +WL
Sbjct: 367 NPL---GVSLKGLPAQTVTRGYHMLALHTRVAKARVLTNWL 404
>gi|415886953|ref|ZP_11548696.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus methanolicus MGA3]
gi|387585604|gb|EIJ77929.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus methanolicus MGA3]
Length = 404
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 175/414 (42%), Gaps = 73/414 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPRI ILG G+GGL T RL+ LV ++ ++LV++++ L+E +G +
Sbjct: 2 RKPRIVILGAGYGGLMTTTRLQKLVGANE--ADIILVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ D++ V F K + +++ VLLE + +YD+LV+
Sbjct: 60 RVRYDIKDVIDRNKVDFIKGTAVEIKTAEN-------------KVLLEDREL-DYDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
++G E + + G E+AF S + A R+ R+ E + + KD + + V G
Sbjct: 106 AVGGESETFGIKGMKEYAFAISNVNAARRI-REHIEYQFATYNTEAEKKDERLTIVVGGA 164
Query: 253 GYSGVELAATVSERLEE--KGIVQAINVETTIC----PTGTPGNR----EAALKVLSARK 302
G++G+E + R+ E + IN IC P+ PG + A+ L ++
Sbjct: 165 GFTGIEFLGELVNRVPELCREYDVDINKVKIICVEAAPSALPGFDPELVKYAMSRLESKG 224
Query: 303 VQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+ +G ++ C PE I K D E + +
Sbjct: 225 VEFRIGTPIKEC------------TPEG-----ILVAKGED-------------ELEEIK 254
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-AL 419
A V+W G + N + A R + + L GH +F +GD S +
Sbjct: 255 AGTVVWAAGVRG--------NAIIEKSGFEAMRARVKVQPDLRAPGHDNVFIIGDCSLII 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL + I ++ L F+ G + LG +DA
Sbjct: 307 NEEINRPYPPTAQIAMQQGEVCARNLVSLIRNKELEAFKPDIKGTVCSLGDDDA 360
>gi|170750079|ref|YP_001756339.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium radiotolerans JCM 2831]
gi|170656601|gb|ACB25656.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium radiotolerans JCM 2831]
Length = 443
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 161/389 (41%), Gaps = 73/389 (18%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V LVD++ ++KP+L+E+ +G +D A D L + F+ R+ + D
Sbjct: 37 KRAHVTLVDRARTHIWKPLLHEVAAGSLDVGHHA---VDYLHHAHTHGFRYRIGRMTGLD 93
Query: 167 HLGVNGPMACTH---GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
+A ++ G V E V YD LV+++G+ PG AE A T +
Sbjct: 94 REARTIQLAASYDAEGREVTPERA--VPYDTLVMAVGSTTNDFGTPGVAEHAIALDTQDQ 151
Query: 224 ACRVDRKLSELERRNFGKDSLIR-----VAVVGCGYSGVELAATVSERLEEKGIVQAINV 278
A R ++L R + +R V V+G G +G ELAA + L +V
Sbjct: 152 AVRFHQRLVNASLRAHTQAGPVRPGQLHVTVIGAGATGTELAAELHRTLR--------HV 203
Query: 279 ETTICPTGTPGNR------EAALKV-------LSARKVQLV--LGYFVRCIRRVGEFEAS 323
+T PG EAA ++ LSA +QL+ +G VR RV E A
Sbjct: 204 VSTGLDKIDPGKDIRITLVEAADRILPAVPQRLSAEVMQLLNKIGVDVRVKARVTEVRAD 263
Query: 324 VKQPESGA-IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 382
Q G IP+ +LV+W G K PP
Sbjct: 264 GVQLADGTFIPS----------------------------ELVVWAAGVK------APPF 289
Query: 383 -NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADF 440
+ L Q TL P IFA+GD + L ++ S P+P AQ A QQA
Sbjct: 290 LQGIGGLETTRTNQLVVTPTLQTTRDPDIFAIGDCAYLVEAGSDTPVPPRAQAAHQQASH 349
Query: 441 AGWNLWAAINDRPLLPFRFQNLGEMMILG 469
+ A I+ +PL PFR+++ G ++ LG
Sbjct: 350 LIGQIQAKIDGKPLKPFRYKDFGSLVSLG 378
>gi|402308699|ref|ZP_10827703.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella sp. MSX73]
gi|400375150|gb|EJP28060.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella sp. MSX73]
Length = 423
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 172/415 (41%), Gaps = 74/415 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ R+ I+GGG GL ALRL +Q V+LVD++ F P++Y++ S ++
Sbjct: 8 NNQKRVVIVGGGLAGLQLALRLRHTDFQ------VVLVDKNNYNQFPPLIYQVASAGLEP 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I+ F L N +F+ L +D ++ H YD+LV
Sbjct: 62 SSISFPFRRLFQNQRNFYFRMGEALSVDNDERVLHTSFGTLH-------------YDYLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
L+ GA A P T+ +A ++ + +E E + SL+ + +V
Sbjct: 109 LAAGATTNFFGNVNIEREALPMKTVTEAMKLRNTVLQNLEKAETEDDEHRRQSLLNIVIV 168
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G SGVE+A ++E ++ T+ P P L A ++ + Y
Sbjct: 169 GGGPSGVEIAGALAE------------MKRTVVPRDYPD--------LDANRMNI---YL 205
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE---SQIFEAD---- 363
V RR+ +K +S + + A+K+ + + + P ++ Q+ +D
Sbjct: 206 VNADRRL------LKSMDSAS--SARAEKDLREMGVNVMPGYTVVDCRSGQVMLSDGSSI 257
Query: 364 ---LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
V+W G + P + H G+ TD VKG ++A+GD S +
Sbjct: 258 DTRTVIWVSGIRASTIGGIPQTSIGHA------GRVLTDRFNNVKGMAGVYAIGDQSLVE 311
Query: 421 DSSGRPL--PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ PL P AQVA QQA NL ++ PF ++NLG M +GR A
Sbjct: 312 GDADYPLGHPQLAQVAIQQATNVAENLMRINRNKQPRPFTYRNLGTMATIGRKRA 366
>gi|426402333|ref|YP_007021304.1| NADH dehydrogenase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425859001|gb|AFY00037.1| NADH dehydrogenase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 423
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/407 (23%), Positives = 175/407 (42%), Gaps = 68/407 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF GL A + + + V L+D+ +F+P+LY++ + + EI+
Sbjct: 4 KVVIVGGGFAGLKAAR-----AFGNKEDVSVTLIDRRNYHLFQPLLYQVATAGLSPAEIS 58
Query: 141 PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI------VEYD 193
+L+ V F D ++ +V L++ I ++YD
Sbjct: 59 GPIRGILSKYKNVSVFLDNLE--------------------SVDLKNKKIQVPDRTLDYD 98
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
+L+L+ GA+ P E A TLE A + R+L +E E + +
Sbjct: 99 YLILACGAKHSYFAHPEWEENAPGLKTLEQATEIRRRLLMAFERAEKETDPEKQKQQLTF 158
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR-EAALKVLSARKVQLV 306
+VG G +GVELA T+ E + + + I P+ T EA ++L+A
Sbjct: 159 VIVGAGPTGVELAGTIGE-ISRHTLTKDFR---HIDPSRTRVILIEAGPRILAA------ 208
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
F + + + + ++ ++ + +++ L ++ +A +L
Sbjct: 209 -------------FHPDLSRKAAADLEDLGVQIWTNTRVTDVKSDSVVLGDEVIKAATIL 255
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
W G +P N+ +PL+ G+ ++ L +K HP +F LGD + +G+
Sbjct: 256 WAAGVQP------SSINKTLGVPLDRAGRVIIEKDLSLKEHPEVFILGDQACYLTDNGQA 309
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP A VA QQ A + I+ +P L F++ + G+M +GR A
Sbjct: 310 LPGLASVAMQQGTHAANQILREIDGKPRLDFKYLDKGQMATIGRRKA 356
>gi|257419678|ref|ZP_05596672.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T11]
gi|257161506|gb|EEU91466.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T11]
Length = 403
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLFENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|375102094|ref|ZP_09748357.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
gi|374662826|gb|EHR62704.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
Length = 386
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 165/396 (41%), Gaps = 69/396 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I +LG G+ GL A+ L + D + LV+ +ERF + L+++ SG+ +A
Sbjct: 3 KIVVLGAGYAGLTAAVNLAARTKHRDDV-HITLVNAAERFTERLRLHQVASGQ----RVA 57
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R +LL +TGV+F + V L + TV ++ ++E+D LV +L
Sbjct: 58 DFRIPELLRDTGVEFVRGWVTGLDATAR-------------TVRVDDQRVLEFDTLVYAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G+ + VPGA A+ + DA + R+LSE VAV G G +GVE
Sbjct: 105 GSVARTSTVPGADIHAYTLDSTHDAELLARRLSE--------PGAPTVAVCGSGLTGVEA 156
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
AA ++E+ +V E P G R A R LG VR
Sbjct: 157 AAEIAEQHPAADVVLLGRQE----PGAALGERARA----HVRAALDRLGVRVR------- 201
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
D+ +L + G ES AD+VLWT G
Sbjct: 202 ------------------DEVEIVKVLPGSVELAGGES--VTADVVLWTSGV------TA 235
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439
P L ++ G+ TD +L HP ++A+GD++A+R G L T Q
Sbjct: 236 SPLASAAGLEVDELGRIVTDSSLRSVTHPHVYAVGDAAAVRQRFG-VLHGTCQSGMPTGV 294
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
A ++ A + R FRF L + LGR+DA V
Sbjct: 295 HAAVSITAELKGRRPKAFRFGYLHTPVSLGRHDAVV 330
>gi|420247626|ref|ZP_14751024.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
gi|398070753|gb|EJL62039.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
Length = 448
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 174/401 (43%), Gaps = 44/401 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GGL A RL + V + ++ +VLLVD+ +KP+L+E SG +D +
Sbjct: 15 RIVIVGGGAGGLELATRLGNTVGRK-RRAEVLLVDRYPTHFWKPLLHEAASGHIDPAQHD 73
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+A +F + K L ++ M ++ + YD LVL++G
Sbjct: 74 ISYAVQAKRHSFRFVQGDFKALDSNERRITVASMVDEENREIV--PAQQIPYDTLVLAVG 131
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFGKDSLIRVAVVGC 252
+ V GA E A +E A + RKL E R ++ L+ V ++G
Sbjct: 132 SVTNFFNVAGAEEEALRLENVEQAEQFRRKLLAACFRAGHEKNRTGGSEEPLVNVNIIGG 191
Query: 253 GYSGVELAATVSERLEEKGIVQ--AINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G +GVELAA+V + +E + A++ IC GN + L LS L +
Sbjct: 192 GATGVELAASVRDAVEHFADYRFAALDPTKDICVRVIEGN-DRVLPGLSPELSAAALSHL 250
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+R ++ +A V + A+ A D + +DL LW G
Sbjct: 251 LRLNVQIMT-KARVIEVRKDALLTAAGD--------------------VLPSDLTLWAAG 289
Query: 371 --SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
P L H L LN GQ + TL PRI+A+GD +++ + G P
Sbjct: 290 VAGAPSLSHCP-------GLRLNRNGQMLINTTLQSVADPRIYAIGDCASIDPNLGTGWP 342
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
TAQ A QQA + L A + + + FR+++ G ++ G
Sbjct: 343 ITAQAAHQQAVYLASALAANLTLKNISEFRYRDGGTLVSFG 383
>gi|68535991|ref|YP_250696.1| NADH dehydrogenase [Corynebacterium jeikeium K411]
gi|68263590|emb|CAI37078.1| NADH dehydrogenase [Corynebacterium jeikeium K411]
Length = 471
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/430 (24%), Positives = 179/430 (41%), Gaps = 80/430 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ + I+G GFGGL+ A + + ++ QV +VD++ +F+P+LY++ +G +
Sbjct: 6 NRHHVVIIGAGFGGLFAAKKFK------NENVQVTIVDRTNHHLFQPLLYQVATGILSEG 59
Query: 138 EIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIAP +LA+ V+ K V+ + ++ + GGT ++ YD L+
Sbjct: 60 EIAPSIRQILADQDNVRVVKGEVRNVDINEQ-----TVTADLGGT-----DAVLNYDSLI 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFGKD-----SLIRVAVV 250
L+ GA AEFA +++DA + +++ ER D L+ VV
Sbjct: 110 LAAGAGQSYFGNEQFAEFAPGMKSVDDALEIRARVTGAFERAEITTDPEARKRLLTFVVV 169
Query: 251 GCGYSGVELAATVSERLEE--KGIVQAINVETT-----------ICPTGTPGNREAALKV 297
G G +GVELA ++E + + IN E T + P G R+AA +
Sbjct: 170 GAGPTGVELAGQLAEMSHRTLRDEFREINTEDTRILLIDGGPQVLAPFGKRLGRKAARR- 228
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L V +VL V + + G +K E +P+ A
Sbjct: 229 LEDLGVDIVLNSLVTDVSKEGVRYKDMKTEEEHFVPSYAK-------------------- 268
Query: 358 QIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
+W+ G + PL HV + ++ G+ ++ L + H IF +GD
Sbjct: 269 --------IWSAGVAASPLGKHVAEQAG----IEVDRAGRVPVNDDLTLGEHRNIFIVGD 316
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND----RPLLPFRFQNLGEMMILGRN 471
S LP AQVA Q +A + +N+ +PF + + G M I+ R
Sbjct: 317 M-----MSKDRLPGVAQVAMQGGQYAASTILDEVNNGTAPEGRVPFSYFDKGSMAIVSRF 371
Query: 472 DAAVSPSFVE 481
+A V + E
Sbjct: 372 NAVVKMNKAE 381
>gi|387928789|ref|ZP_10131467.1| NADH dehydrogenase [Bacillus methanolicus PB1]
gi|387588375|gb|EIJ80697.1| NADH dehydrogenase [Bacillus methanolicus PB1]
Length = 404
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 178/416 (42%), Gaps = 77/416 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP+I ILG G+GGL T RL+ LV ++ +++LV+++ L+E +G +
Sbjct: 2 RKPKIVILGAGYGGLVTTTRLQKLVGVNE--AEIILVNKNAYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ D++ V F K + +++ VLLE + +YD+LV+
Sbjct: 60 RVRYDVKDVIDRNKVNFIKGTAVEIKTAEN-------------KVLLEDREL-DYDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFGKDSLIRVAV 249
++G E + + G EFAF S + A R+ + +E+E+ KD + + V
Sbjct: 106 AVGGESETFGIKGMKEFAFSISNVNAARRIREHIEYQFATYNNEVEK----KDERLTIVV 161
Query: 250 VGCGYSGVELAATVSERLEE--KGIVQAINVETTIC----PTGTPGNR----EAALKVLS 299
G G++G+E + R+ E + IN IC P+ PG + A+ L
Sbjct: 162 GGAGFTGIEFLGELVNRVPELCREYDVDINKVKIICVEAAPSALPGFDPELVKYAMSRLE 221
Query: 300 ARKVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
++ V+ +G ++ C PE I K D E +
Sbjct: 222 SKGVEFRIGTPIKEC------------TPEG-----ILVAKGED-------------ELE 251
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS- 417
+A V+W G + +E + AR + E D L GH +F +GD +
Sbjct: 252 EIKAGTVVWAAGVRG-SAIIEKSGFE----AMRARVKVEPD--LRAPGHDNVFIIGDCAL 304
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ + RP P TAQ+A QQ + NL A I ++ L F+ G + LG +DA
Sbjct: 305 IINEEINRPYPPTAQIAMQQGEVCARNLVALIRNKELEAFKPDIKGTVCSLGDDDA 360
>gi|291453014|ref|ZP_06592404.1| NADH dehydrogenase [Streptomyces albus J1074]
gi|291355963|gb|EFE82865.1| NADH dehydrogenase [Streptomyces albus J1074]
Length = 428
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 162/401 (40%), Gaps = 60/401 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGGF G+ A +L + LLVD F+P+LY+L + ++ E+A
Sbjct: 7 VIVVGGGFAGIEAATKLGR------AGVRTLLVDVHGYHQFQPLLYQLATAQIGVSELAR 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGG-TVLLESGLIVEYD-WLVLSL 199
+ PS + G A G T+ L G + E D L+++
Sbjct: 61 PLRSIFRRQ-------------PSVRVLTAGVAAVDPGRRTITLTDGTVYEADDALIVAC 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL--ERRNFGKDSLIRVAVVGCGYSGV 257
GAE PGA E A+P + DA R+ KL L + + + VAVVG G +GV
Sbjct: 108 GAEANFFDTPGARENAYPLYSATDATRLGSKLVALLDQADKDTEQKSMNVAVVGAGPTGV 167
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
E A +++ AIN + P G+ V V LG F + +
Sbjct: 168 ETAGAIAD---------AINY---VVPKLFAGDLAKRCSVALVDMVDRTLGGFSKKSQAY 215
Query: 318 GE---FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP- 373
E V+ A+ + D + + +ADLV+W G K
Sbjct: 216 AASRLVERGVRLKLGSAVTEVRED------------GLSFADGATMDADLVIWAGGLKAG 263
Query: 374 -LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
LL R +P G+ + + L V G+ ++ LGD++ + D LP
Sbjct: 264 KLL--------RESGMPQGRGGRIDVAKDLTVPGYEGVYVLGDAANITDDRDERLPQLGS 315
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
VA Q +A N+ A RP PF +++ G M ++GR A
Sbjct: 316 VAKQSGGWAARNILAQRAGRPTEPFGYKDRGYMAMIGRGSA 356
>gi|340777755|ref|ZP_08697698.1| NADH dehydrogenase [Acetobacter aceti NBRC 14818]
Length = 427
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 162/408 (39%), Gaps = 56/408 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KK I I+GGG GL A RL + + + + ++ L+D+S V+KPML+ +G
Sbjct: 3 KKSEILIVGGGVAGLALATRLGNSIGKQGQA-RITLIDKSFSHVWKPMLHCFAAGTAQNE 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + +F+ V + V GP+ + G VL G VEYD L+L
Sbjct: 62 NDRISFMAQASEHHFEFWPGEVIGVDRDKREAVLGPLHSSDGAIVL--EGRTVEYDALIL 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
S+G+ PG AE L +A + K R + D + +A+VG G +G
Sbjct: 120 SIGSCANDFGTPGVAEHCLFIDNLVEANGFNEKFRMELLRAYAGDGALDIAIVGGGATGT 179
Query: 258 ELAATVSERLEEKGI-----------VQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+LAA + + LE G+ + + I P EAA K L V++
Sbjct: 180 QLAAELHKALELVGLHSFSQTPPSLNITLLEAGPRILPAFPEAVSEAAQKELERIGVKVR 239
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
V G E+ + +P A L +
Sbjct: 240 TSAMVS-----GADESGFSLKDGSHVP----------------------------ATLRV 266
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
W G K P V L L+ GQ + + L P IFA+GD S + + P
Sbjct: 267 WAAGVKA--PEV---TTGFGGLSLSRSGQIQINPNLQTIDDPAIFAMGDCSYIVND---P 318
Query: 427 LPATAQVAFQQADFAGWNLWAAIND-RPLLPFRFQNLGEMMILGRNDA 473
LP TAQVA QQA +L A + D R + F N G ++ LG +
Sbjct: 319 LPPTAQVARQQAHHLARHLPAWLRDGREIPSCVFNNKGAIVALGNYNG 366
>gi|56964688|ref|YP_176419.1| NADH dehydrogenase [Bacillus clausii KSM-K16]
gi|56910931|dbj|BAD65458.1| NADH dehydrogenase [Bacillus clausii KSM-K16]
Length = 400
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 170/413 (41%), Gaps = 76/413 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI I G G+GG+ TA+ L + +D + LV++ + L+E +G ++
Sbjct: 3 KARIVIAGAGYGGMNTAVTLSKKLGPND--ASITLVNKHDYHYQTTWLHEPAAGTLEPDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AD+L + V F +D V L +D V+L+ G + EYD+LVL+
Sbjct: 61 TRVKIADVLNTSRVNFVQDEV-LEVKTDE------------KKVMLKEGEL-EYDYLVLA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCGY 254
LGA + +PG E AF TL A +V D + + + L+ V G G+
Sbjct: 107 LGATAETFGIPGVHEHAFTKWTLNGARQVKDHIDAQFANYNNVEDKHEGLLTFVVAGAGF 166
Query: 255 SGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARK 302
+G+E +SER+ E + V+ VE PT PG E A+ +L +R
Sbjct: 167 TGIEFIGELSERVPELCKTYDVPREKVRLFVVEA--APTALPGFDPELVEYAMNLLESRG 224
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+ + ++ + SG I E + +A
Sbjct: 225 VEFKINTPIKEVT------------ASGVIVG---------------------EGEEIKA 251
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRD 421
+ V+W G + P +E RG+ + + L GH +F +GD + + +
Sbjct: 252 ETVVWATGVRG-NPVIEKSGFEA------MRGRVKVNPDLRAPGHDDVFIIGDCALIINE 304
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A Q A NL A L F+F N G + LG A
Sbjct: 305 EINRPYPPTAQIAMQMAKTCANNLIALNKGSTDLETFKFDNKGTVASLGGKQA 357
>gi|410461176|ref|ZP_11314828.1| NADH dehydrogenase [Bacillus azotoformans LMG 9581]
gi|409925961|gb|EKN63159.1| NADH dehydrogenase [Bacillus azotoformans LMG 9581]
Length = 407
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 182/421 (43%), Gaps = 85/421 (20%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P + ILG G+GG+ TA+ L+ + ++ + LV++ L+E +G +
Sbjct: 2 KRPNVVILGAGYGGIMTAVNLQKTLGVNE--ANITLVNKHNYHYQSTWLHEGAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ + V F KD V + P + TV+LE G + YD+LV+
Sbjct: 60 KIRIPINDVIQPSKVNFIKDTVVEIKPQEK-------------TVILEKGEPLSYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---------SELERRNFGKDSLIRVA 248
LG E + + G E+A+ +++ ++ R+ R+ +E+E+R + L+ +
Sbjct: 107 GLGFESETFGIKGLKEYAYSITSI-NSVRLIREHIEVCFAQYNNEVEKR----EELLTIV 161
Query: 249 VVGCGYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNREA----ALK 296
V G G++G+E ++ R+ E + V+ + VE PT PG +A A+
Sbjct: 162 VGGAGFTGIEFLGELANRIPELCDEYDIDRKKVRVVCVEAA--PTALPGFNQALVEYAMN 219
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L R V+ +G ++K+ I + D+ + E++ A
Sbjct: 220 HLEQRGVEFKIG-------------TAIKECTPDGII-----VSKDEVVEEIKAAT---- 257
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGD 415
V+W G + N+ + A RG+ + L G+ +F +GD
Sbjct: 258 --------VVWAAGVR--------GNSIVEKSGFEAMRGRVKVQPDLRAPGYDEVFIVGD 301
Query: 416 SSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAINDR--PLLPFRFQNLGEMMILGRND 472
+ L + RP P TAQ+A Q AD NL A I + L F G + LG +D
Sbjct: 302 CALLINEEINRPYPPTAQIAIQMADTCAANLAALIRGKEGELKAFVPDIKGTVCSLGHDD 361
Query: 473 A 473
A
Sbjct: 362 A 362
>gi|152977220|ref|YP_001376737.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus cytotoxicus NVH 391-98]
gi|152025972|gb|ABS23742.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bacillus cytotoxicus NVH 391-98]
Length = 402
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 179/414 (43%), Gaps = 75/414 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKTLSASE--AEITLVNNNSYHYQTTWLHESAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ D++ V F +D V + ++ V+L++ + +YD+LV+
Sbjct: 60 KVRLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RVILKNSEL-KYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGY 254
LG E + + G E AF + + + R R+ E + + +D L+ + V G G+
Sbjct: 106 GLGFESETFGIKGLKEHAFSITNI-NTTRQIREHMEYKFAQYATEKRDELVTIVVGGAGF 164
Query: 255 SGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARK 302
+G+E ++ R+ E + V+ I VE PT PG E A+K L +
Sbjct: 165 TGIEYVGELANRIPELCKEYDVPREKVRIICVEA--APTALPGFDPELVEYAVKQLEKKG 222
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+ +G ++ EA+ E G + G + ++ ++
Sbjct: 223 VEFRIGTAIK--------EAT----EEGIL------------------VANGDDVELIKS 252
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALR 420
+ V+W G + N + + A RG+ + DE + G +F +GD++ +
Sbjct: 253 ETVVWAAGVRG--------NGIVEESGFEAMRGRVKVDEFMRAPGQENVFMVGDAALIIN 304
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ NL I + + F F N G + LG +DA
Sbjct: 305 EEINRPYPPTAQIAIQQGYNIAHNLSVLIRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|256389844|ref|YP_003111408.1| NADH dehydrogenase [Catenulispora acidiphila DSM 44928]
gi|256356070|gb|ACU69567.1| NADH dehydrogenase [Catenulispora acidiphila DSM 44928]
Length = 462
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 203/470 (43%), Gaps = 90/470 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P+I +LG GF G A +LE + DD ++ LV ++ P+L + SG +
Sbjct: 3 RPKILVLGSGFAGTECAHKLEKKLSIDDA--EIRLVTPVNHQLYLPLLPHVASGVLTPQA 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL---LESGLIVE-YDW 194
+A +L T L+ P +G++ T +V+ ++ +VE YD+
Sbjct: 61 VAVSLRRMLKRT----------LVIPGGAIGID-----TQTKSVVVRKIDGQEVVERYDY 105
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----RRNFGKDSLIRVA 248
L+L+ G+ + +PG ++A TL +A + D +++L+ + ++S ++
Sbjct: 106 LILTPGSVTRQFNIPGVDKYAVGVKTLAEAAWIRDHVIAQLDLAAVADTDAERESRLQFV 165
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETT--------ICPTGTP--GNR--EAALK 296
VVG GY+G E AA + +RL + + + N++ + I P P G + E ALK
Sbjct: 166 VVGGGYAGTETAAYL-QRLTTEAVKRYPNLDGSLVKWHLVDIAPRLMPELGEKLGEKALK 224
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
+L R + + LG V A+ D L +
Sbjct: 225 ILRKRGLHVSLGVSV-------------------------AECTEDTVTLT--------D 251
Query: 357 SQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
++ ++WT G PL+ + P N RG+ + L V P +FALG
Sbjct: 252 GRVLPCRTLIWTAGVAPSPLIATMGAPTN---------RGRLVVNADLTVPDLPGVFALG 302
Query: 415 DSSALRD--SSGRPL-PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
D++A+ D G + P TAQ A +Q A N+ +A+ PL + ++LG ++ LG
Sbjct: 303 DAAAVPDLAKGGDAICPPTAQHAMRQGWAAAENVMSAVRGFPLKDYHHKDLGLVVDLGGL 362
Query: 472 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
A P G+ L G + +++ L T R + G WL S +
Sbjct: 363 KAVSKPL---GIPLSGLPAQIVARGYHIMALRTFAARFRTGAGWLLNSLV 409
>gi|257087253|ref|ZP_05581614.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis D6]
gi|422696409|ref|ZP_16754370.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4244]
gi|422724094|ref|ZP_16780584.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2137]
gi|424672521|ref|ZP_18109480.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
599]
gi|256995283|gb|EEU82585.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis D6]
gi|315026057|gb|EFT37989.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2137]
gi|315146169|gb|EFT90185.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4244]
gi|402355558|gb|EJU90330.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
599]
Length = 403
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + V+ + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVQTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSG 256
LG E + +PG E A ++ A V + E R + + +++ V G G++G
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTG 165
Query: 257 VELAATVSER----LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLV 306
+EL ++ E E G+ +Q VE T + P +++L + L+
Sbjct: 166 IELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLL 225
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
LG + I+ + + E+G + ++A ++
Sbjct: 226 LG---KPIKEIKPGAVVYQDNEAGDLAELSAKT-------------------------II 257
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
WT G HV + D A RG+ L H ++ +GD SA+ D+ +
Sbjct: 258 WTTGVSG--SHV------VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETN 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RP P TAQ+A + A N+ A + PF F++ G + +G A
Sbjct: 310 RPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|388569064|ref|ZP_10155471.1| putative NADH dehydrogenase [Hydrogenophaga sp. PBC]
gi|388263623|gb|EIK89206.1| putative NADH dehydrogenase [Hydrogenophaga sp. PBC]
Length = 432
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 158/368 (42%), Gaps = 37/368 (10%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+V LVD+ ++KP L+E+ +G +D + + L + F K L +
Sbjct: 29 RVTLVDRQLFHIWKPSLHEVAAGTLDIHQEGLSYEMLAYDNRFTFCLGAFKGLNADQRVI 88
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ HG ++ E L+ Y LVL+LG+ VPGAAE + + DA R +
Sbjct: 89 TVDAVHDEHGEQLIPERTLV--YGQLVLALGSTANHFNVPGAAEHSMSLNQPADAERFRQ 146
Query: 230 KLSELE-----RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
++ +L R++ G ++ +RV ++G G +GVELAA + E A V T
Sbjct: 147 RMLKLLTAAELRKSAGAEAAVRVVIIGGGATGVELAAELRE---------ASQVHT---- 193
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
R ++ R VQL L R + V + + A + +
Sbjct: 194 ------RYGFRRLDGLRDVQLTL--IEGADRILAPLPERVSASATALLRERAVNVVTGCR 245
Query: 345 ILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
+ + P A+ E + F ADLV+W G K P LP+ GQ E + L
Sbjct: 246 VAGVTPDAVTDTEGRSFPADLVVWAAGIKA------PALLGEQGLPVTRSGQVEVEANLR 299
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL--LPFRFQN 461
VKG I ALGD +A G +P AQ A QQA + L R L P+R+++
Sbjct: 300 VKGQDAIHALGDCAACALPGGGLVPPRAQAAHQQASYLAKRLRDLSEGRALDNEPYRYRD 359
Query: 462 LGEMMILG 469
G ++ LG
Sbjct: 360 HGSLVSLG 367
>gi|189347437|ref|YP_001943966.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium limicola DSM 245]
gi|189341584|gb|ACD90987.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium limicola DSM 245]
Length = 433
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/444 (22%), Positives = 175/444 (39%), Gaps = 57/444 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF G+ A L + K V L+D+ +F+P+LY++ + +
Sbjct: 2 KKRVVIIGGGFTGINAARIL-----GNKKDIDVTLIDRKNYHLFQPLLYQVAMSALGEGD 56
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +++AN F + ++ + + T G + YD+L+L+
Sbjct: 57 IAAPLRNMVAN-----FHNITVFKGIAEQIDAENRIVKTDFGDI--------PYDYLILA 103
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRN--FGKDSLIRVAVVGC 252
G + EFA TL A + R++ E ER N + L+ +VG
Sbjct: 104 CGVKHHYFGNNQWEEFAPGLKTLAQAKEIRRRVLEAYEAAERTNDPVERKKLLTFVIVGG 163
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVELA ++ E +R K+ +L + V
Sbjct: 164 GPTGVELAGSIGEM-----------------------SRYTLSKLYRQIDPKLTRIFIVE 200
Query: 313 CIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
R+ G F+ + + ++ + + + ++ + ++ EA VLW G
Sbjct: 201 AAPRILGSFDPELASKATRSLEKLGVQVWTSSMVSDVDANGVQIGNERIEAATVLWAAGV 260
Query: 372 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431
+ + L + G+ +E L V G+P +F GD + PLP A
Sbjct: 261 TAI------DTGKEMGLETDRIGRIIVEEDLSVPGYPDVFVGGDQAHFSHGLQNPLPGLA 314
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
VA QQ N+ I + F + + G+M +GRN A V + + DG
Sbjct: 315 PVALQQGRAIARNILLDIQGKARKVFHYTDKGQMATIGRNKAIVQ---IGNIRFDGAPAW 371
Query: 492 SARKLAYLIRLPTDEHRLKVGVSW 515
L ++ L T +HR+ V + W
Sbjct: 372 FTWLLVHIYYLATFKHRIFVLMQW 395
>gi|89100537|ref|ZP_01173397.1| NADH dehydrogenase [Bacillus sp. NRRL B-14911]
gi|89084724|gb|EAR63865.1| NADH dehydrogenase [Bacillus sp. NRRL B-14911]
Length = 405
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 176/414 (42%), Gaps = 72/414 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP+I ILG G+GGL A RL+ V ++ +++LV++++ L+E +G +
Sbjct: 2 KKPKIVILGAGYGGLMVATRLQKQVGVNE--AEIVLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +++ ++F + + + V+LE G V YD+LV+
Sbjct: 60 RVRYDVKNVIDRNKIEFVQGTAVEIKTEEK-------------KVILEEGE-VTYDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
SLGAEP+ + G AF + +A R R+ E + + KD + + V G
Sbjct: 106 SLGAEPETFGIKGLDVHAFSIINV-NAARQIREHIEYQFATYNTEEEKKDERLTIVVGGA 164
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARK 302
G++G+E ++ R+ E V+ I VE T+ P P A+ L +
Sbjct: 165 GFTGIEFLGELANRVPELCKEYDVDYSKVKIICVEAAPTVLPGFDPELVNYAVSHLEKKG 224
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
VQ ++G ++K+ I D+ E + +A
Sbjct: 225 VQFLIG-------------TAIKECNEDGITVGKGDE----------------EVEHIKA 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALR 420
V+W G + N+ + + + A RG+ + L V GH +F +GD S +
Sbjct: 256 GTVVWAAGVR--------GNSIIENSGIEAMRGRVKVQPDLRVPGHEDLFIIGDCSLIIN 307
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + N+ A I ++ L F G + LG +DA
Sbjct: 308 EEINRPYPPTAQIAMQQGEVCARNIVALIRNKGELETFTPDIKGTVCSLGEDDA 361
>gi|375287075|ref|YP_005107514.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
NC7401]
gi|358355602|dbj|BAL20774.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
NC7401]
Length = 392
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 165/412 (40%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ D+ F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEDKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|359793950|ref|ZP_09296680.1| NADH dehydrogenase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359249814|gb|EHK53382.1| NADH dehydrogenase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 443
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 112/426 (26%), Positives = 188/426 (44%), Gaps = 57/426 (13%)
Query: 57 GDLVVTSE--DESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
GD V+T D+ S+ P ++PR+ ILGGGFGGL AL L + V +V
Sbjct: 7 GDAVMTIAELDKPQSKAVAEP-TRRPRVVILGGGFGGLNAALGLR------NAPVDVTIV 59
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
D+ +F+P+LY++ + + +IA +LA K+ L+ + GV+
Sbjct: 60 DRRNYHLFQPLLYQVATAGLSPAQIAMPIRRILAGQ-----KNATVLMEKVE--GVD--- 109
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSE 233
G +L + + YD+L+++ GA A T+ DA + R LS
Sbjct: 110 ---TGSRTVLTANRRLPYDYLIIATGARHAYFGHDDWENTAPGLKTIPDATEIRGRILSA 166
Query: 234 LERRNFGKD-----SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI-NVETTICPTGT 287
E+ +D L+ V+G G +GVELA + E L K IV+ N++++ T
Sbjct: 167 FEKAEVTEDPELRRKLLTFVVIGGGPTGVELAGAIVE-LARKAIVRDFRNIDSS---TAR 222
Query: 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347
EA ++L+A +L R + R+G VK + A A D N
Sbjct: 223 VVLVEADKRLLTAFPEKLS-DSAKRQLERLG---VEVKLGAAVA----ACDGNG------ 268
Query: 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 407
+ + Q + VLW G + + D+P + G+ D+ L V G
Sbjct: 269 ----VALSDGQRIASACVLWAAGV------MASRAAKWLDVPSDRAGRVIVDDHLHVPGR 318
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
++ +GD++ ++ + GRP+P A A Q + + A + +P+ PFR+ + G +
Sbjct: 319 EGVYVIGDTACVKGTDGRPIPGVAPAAKQMGRYVAGLIRAGLAGKPVAPFRYSDYGNLAT 378
Query: 468 LGRNDA 473
+GR A
Sbjct: 379 IGRKAA 384
>gi|419858810|ref|ZP_14381469.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni DSM
20252 = AWRIB129]
gi|410497688|gb|EKP89158.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni DSM
20252 = AWRIB129]
Length = 390
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 177/435 (40%), Gaps = 75/435 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-SLIRVAVVGCGYSGVEL 259
E + + GA EF P ++ A + L E L R D + + +AV G G++ +E
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKHLEETLARFQSSHDENDLHIAVCGAGFTSIEY 165
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNR------EAALKVLSARKVQLVLGYFVRC 313
+ RL + V+ N+ P + EAA KVL +LV Y V
Sbjct: 166 IGELLHRLPD--FVKRFNL---------PAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNY 213
Query: 314 IRRVG-EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
++ G EF E + + + GA+ I+ DK F A+ ++WT G
Sbjct: 214 LKNQGVEFYTETPITEVKKGAV--ISKDK-------------------AFNANTIIWTTG 252
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
K HV + R + L P F +GD SA+ GR P T
Sbjct: 253 VKG--SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTT 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
Q++ QA A N+ A +N++ PF + +LG + LG + SF+ L G
Sbjct: 306 GQISVAQATLAASNIIAKLNNQKTSPFNYHSLGTVCSLGPTNGVAELSFMGHWKLKG--- 362
Query: 491 HSARKLAYLIRLPTD 505
K+A L R+ D
Sbjct: 363 ---HKVAPLKRIVND 374
>gi|260578691|ref|ZP_05846599.1| NADH dehydrogenase [Corynebacterium jeikeium ATCC 43734]
gi|258603188|gb|EEW16457.1| NADH dehydrogenase [Corynebacterium jeikeium ATCC 43734]
Length = 471
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 181/430 (42%), Gaps = 80/430 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ + I+G GFGGL+ A + + ++ QV +VD++ +F+P+LY++ +G +
Sbjct: 6 NRHHVVIIGAGFGGLFAAKKFK------NENVQVTIVDRTNHHLFQPLLYQVATGILSEG 59
Query: 138 EIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIAP +LA+ V+ K V+ + ++ + GGT +++YD L+
Sbjct: 60 EIAPSIRQILADQDNVRVVKGEVRNVDINEQ-----TVTADLGGT-----DAVLKYDSLI 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFGKD-----SLIRVAVV 250
L+ GA AEFA +++DA + +++ ER D L+ VV
Sbjct: 110 LAAGAGQSYFGNEQFAEFAPGMKSVDDALEIRARVTGAFERAEITNDPEARKRLLTFVVV 169
Query: 251 GCGYSGVELAATVSERLEE--KGIVQAINVETT-----------ICPTGTPGNREAALKV 297
G G +GVELA ++E + + I+ E T + P G R+AA +
Sbjct: 170 GAGPTGVELAGQLAEMSHRTLRDEFREIDTEDTRILLIDGGSQVLAPFGKRLGRKAARR- 228
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L V+++L V + + G +K E +P+ A
Sbjct: 229 LEDLGVEIILNSLVTDVSKEGVRYKDMKTEEEFFVPSYAK-------------------- 268
Query: 358 QIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
+W+ G + PL HV + ++ G+ ++ L + H IF +GD
Sbjct: 269 --------IWSAGVAASPLGKHVAEQAG----IEVDRAGRVPVNDDLTLGEHRNIFIVGD 316
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND----RPLLPFRFQNLGEMMILGRN 471
S LP AQVA Q +A + +N+ +PF + + G M I+ R
Sbjct: 317 M-----MSKDRLPGVAQVAMQGGQYAANTILDEVNNGTAPEGRVPFSYFDKGSMAIVSRF 371
Query: 472 DAAVSPSFVE 481
+A V + E
Sbjct: 372 NAVVKMNKAE 381
>gi|381161556|ref|ZP_09870786.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
gi|379253461|gb|EHY87387.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
Length = 452
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 202/462 (43%), Gaps = 82/462 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI ++GGGF G+ RLE L+ ++ + LV ++ P+L ++ SG +
Sbjct: 2 EPPRILVVGGGFAGVECVRRLERLLSPEEAS--ITLVAPRNYQLYLPLLPQVASGMLTPQ 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVE-YDWL 195
+A LL T + P LGV+ C G L + +E YD+L
Sbjct: 60 SVAVSLRRLLRRTRI----------APGAALGVDLDTKVCVVEG---LSGRMRIEPYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----RRNFGKDSLIRVAV 249
VL+ G+ + +PG AE A TL +A + D +++L+ + +++ ++ V
Sbjct: 107 VLAPGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAAPEHEEREARLQFVV 166
Query: 250 VGCGYSGVELAATVSERLEEKGIVQA------------INVETTICPTGTPGNREAALKV 297
VG GYSG E AA++ RL + + +++ + P +AA+ +
Sbjct: 167 VGGGYSGTETAASL-HRLTAAAVDRYPGLDPRVIKWHLVDIAPRLMPELGESLGDAAMNL 225
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L R + + LG ++ + AD +K +
Sbjct: 226 LRQRGIDISLGV---------------------SVAEVQADT------------VKLTDG 252
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
++ ++WT G +P P D+ RG+ + E + V G +FA+GD++
Sbjct: 253 RVLPCHTLIWTAGVQP------SPLIGTLDVE-TVRGRVKVTEYMDVPGRHGVFAVGDAA 305
Query: 418 ALRDSS---GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
A+ D S G P TAQ A +Q N+ AA+ PL P+R +++G ++ LG DA
Sbjct: 306 AVPDPSKGDGAVCPPTAQHAQRQGKTVARNVVAALRGYPLQPYRHRDMGLVVDLGGADAV 365
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+P GV+L G + + +++ L T + +V +WL
Sbjct: 366 ANPL---GVSLKGLPAQTVTRGYHMLALHTRVAKARVLTNWL 404
>gi|163852060|ref|YP_001640103.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium extorquens PA1]
gi|240139386|ref|YP_002963861.1| respiratory NADH dehydrogenase 2; cupric reductase
[Methylobacterium extorquens AM1]
gi|254561803|ref|YP_003068898.1| respiratory NADH dehydrogenase 2; cupric reductase
[Methylobacterium extorquens DM4]
gi|418059861|ref|ZP_12697796.1| NADH dehydrogenase [Methylobacterium extorquens DSM 13060]
gi|163663665|gb|ABY31032.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium extorquens PA1]
gi|240009358|gb|ACS40584.1| respiratory NADH dehydrogenase 2; cupric reductase
[Methylobacterium extorquens AM1]
gi|254269081|emb|CAX25044.1| respiratory NADH dehydrogenase 2; cupric reductase
[Methylobacterium extorquens DM4]
gi|373566566|gb|EHP92560.1| NADH dehydrogenase [Methylobacterium extorquens DSM 13060]
Length = 443
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 176/435 (40%), Gaps = 83/435 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ +I ++GGG GL +L + + K + LVD++ ++KP+L+E+ +G +D
Sbjct: 10 QHKIVVVGGGAAGLELVTKLGN-KYGKRGKAHITLVDRARTHIWKPLLHEVAAGSLDVGH 68
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL------IVEY 192
A D L + F+ R+ + G++ H G + Y
Sbjct: 69 HA---IDYLHHAHANHFRYRIGEMT-----GLDREKRVIHLAASRDSEGREVTPVRTIPY 120
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----V 247
D L++++G+ PG AE A T E A R ++L R +D +R V
Sbjct: 121 DTLIMAVGSTTNDFGTPGVAEHAIALDTKEQALRFHQRLVNGMLRAHTQDGPVRPGQLHV 180
Query: 248 AVVGCGYSGVELAATVSERLEEKG------IVQAINVETTICPTGTPGNREAALKVLSAR 301
AV+G G +G ELAA + E I A +++ T+ EAA ++L A
Sbjct: 181 AVIGAGATGTELAAELHRTTREVARTGLDRIDPAKDLKITLI--------EAADRILPAV 232
Query: 302 KVQLV---------LGYFVRCIRRVGEFEA-SVKQPESGAIPNIAADKNSDKYILELQPA 351
+L +G VR RV E A V+ + G IP+
Sbjct: 233 PQRLAVEVMGQLAKIGVEVRVQARVTEVRADGVQLADGGFIPS----------------- 275
Query: 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPR 409
+LV+W G V+ P L L Q TL P
Sbjct: 276 -----------ELVVWAAG-------VKGPAFLKDLGGLESTRNNQLVVTATLQTSRDPD 317
Query: 410 IFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
IFA+GD + L + S P+P AQ A QQA + + RPL PF++++ G ++ L
Sbjct: 318 IFAMGDCAYLVEEGSQTPIPPRAQAAHQQASHLYGQMANRLAGRPLKPFKYRDFGSLVSL 377
Query: 469 GRNDAAVS-PSFVEG 482
G A + F++G
Sbjct: 378 GEYTAVGNLMGFIQG 392
>gi|218288428|ref|ZP_03492718.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Alicyclobacillus acidocaldarius LAA1]
gi|218241401|gb|EED08575.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Alicyclobacillus acidocaldarius LAA1]
Length = 393
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 151/369 (40%), Gaps = 65/369 (17%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
LV++ FK +L+E+ D A L + VK L SD L
Sbjct: 29 LVNREPYHTFKTLLHEVAGARHDPHTYALSLEGLFHRKTSEIVIAEVKNLRLSDKL---- 84
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232
V + G IVEY+ L+++LG+ +PG AE F +L A + +
Sbjct: 85 ---------VETDRG-IVEYETLIVALGSRTATFGLPGVAEHTFRLDSLRAAMELHHHVE 134
Query: 233 -ELER-RNFGKDSLIRVAVVGCGYSGVEL----AATVSERLEEKGI------VQAINVET 280
ELER + G ++V V G G +GVEL A + +RL E+G+ + I+
Sbjct: 135 RELERYQQTGNPVHLKVLVAGGGLTGVELMGEWADWLPKRLREEGLPLTDLHLGLIHAHA 194
Query: 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 340
I P R A + L R V+L+L V +GA P A +
Sbjct: 195 EILPDVDHQLRAVAQEKLVERGVELILNERV-----------------AGAEPQAYALAS 237
Query: 341 SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
K EA ++WT G + P + LP++AR + + DE
Sbjct: 238 GKK----------------LEAGTLVWTGGVEA------PALLKEAGLPVDARNRVDVDE 275
Query: 401 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 460
L KG ++ +GD + + G LP T QVA Q G NL +DRP LPF ++
Sbjct: 276 FLMAKGVSDVYVIGDCARFANVHGNALPPTGQVAEQMGHHLGANLVRRAHDRPPLPFVYR 335
Query: 461 NLGEMMILG 469
+ G + LG
Sbjct: 336 DHGMVASLG 344
>gi|238064431|ref|ZP_04609140.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora sp. ATCC 39149]
gi|237886242|gb|EEP75070.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora sp. ATCC 39149]
Length = 468
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 207/474 (43%), Gaps = 81/474 (17%)
Query: 68 ASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY 127
AS T T KPR+ I+G GF G + A ++L + +++L++ ++ F++ P+L
Sbjct: 27 ASVTGTALAMTKPRVVIVGAGFAGYHAA---KTLSRTARSRAEIVLLNSTDYFLYLPLLP 83
Query: 128 ELLSGEVDAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLES 186
E+ +G V+ ++ + L V + DRV L + +G P GG
Sbjct: 84 EVAAGVVEPGRLSVPLSGTLDGVRVVVGEADRVDLQ--NRWVGYTMP----EGG------ 131
Query: 187 GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLI 245
G + YD LVL++G+ KL +PG E+A F L +A + D + ++E D
Sbjct: 132 GGRLAYDRLVLAVGSVNKLLPIPGVTEYAHGFRGLPEALYLHDHVVRQIELAELTDDPAE 191
Query: 246 RVA-----VVGCGYSGVELAAT--------VSER--LEEKGIVQAINVETTICPTGTPGN 290
+ A VVG GY+G E+AA V++R L + ++V + P
Sbjct: 192 QRARTTFVVVGAGYTGTEVAAHGQLFTDRLVAQRPHLAVRPRWMLLDVAPRVLPELDERM 251
Query: 291 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350
A +VL R V + +G V ++ D +L
Sbjct: 252 SRTADRVLRRRDVDVRMGTSV-------------------------SEATPDGVMLT--- 283
Query: 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPR 409
+ + ++W VG + P+ + +L L +G+ DE L V G P
Sbjct: 284 -----DGEYVPTCSLIWCVGVR--------PDPFVAELGLRTEKGRLVVDEYLTVPGFPE 330
Query: 410 IFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
++A GD++A+ D + G+ TAQ A +Q N+ A+ P++ +LG ++
Sbjct: 331 VYACGDAAAVPDLTRPGQICTMTAQHAQRQGKLVAHNIAASYGQGSRRPYKHHDLGWVVD 390
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
LG DAA +P V+L G + + +L+ +P + R +VG WL +A+
Sbjct: 391 LGGRDAAANPL---KVSLAGLPAKAVTRGYHLLAMPGN--RARVGADWLLDAAL 439
>gi|218530817|ref|YP_002421633.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium extorquens CM4]
gi|218523120|gb|ACK83705.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium extorquens CM4]
Length = 443
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 176/435 (40%), Gaps = 83/435 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ +I ++GGG GL +L + + K + LVD++ ++KP+L+E+ +G +D
Sbjct: 10 QHKIVVVGGGAAGLELVTKLGN-KYGKRGKAHITLVDRARTHIWKPLLHEVAAGSLDVGH 68
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL------IVEY 192
A D L + F+ R+ + G++ H G + Y
Sbjct: 69 HA---IDYLHHAHANHFRYRIGEMT-----GLDREKRVIHLAASRDSEGREVTPVRTIPY 120
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----V 247
D L++++G+ PG AE A T E A R ++L R +D +R V
Sbjct: 121 DTLIMAVGSTTNDFGTPGVAEHAIALDTKEQALRFHQRLVNGMLRAHTQDGPVRPGQLHV 180
Query: 248 AVVGCGYSGVELAATVSERLEEKG------IVQAINVETTICPTGTPGNREAALKVLSAR 301
AV+G G +G ELAA + E I A +++ T+ EAA ++L A
Sbjct: 181 AVIGAGATGTELAAELHRTTREVARTGLDRIDPAKDLKITLI--------EAADRILPAV 232
Query: 302 KVQLV---------LGYFVRCIRRVGEFEA-SVKQPESGAIPNIAADKNSDKYILELQPA 351
+L +G VR RV E A V+ + G IP+
Sbjct: 233 PQRLAIEVMGQLAKIGVEVRVQARVTEVRADGVQLADGGFIPS----------------- 275
Query: 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPR 409
+LV+W G V+ P L L Q TL P
Sbjct: 276 -----------ELVVWAAG-------VKGPAFLKDLGGLESTRNNQLVVTATLQTSRDPD 317
Query: 410 IFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
IFA+GD + L + S P+P AQ A QQA + + RPL PF++++ G ++ L
Sbjct: 318 IFAMGDCAYLVEEGSQTPIPPRAQAAHQQASHLYGQMANRLAGRPLKPFKYRDFGSLVSL 377
Query: 469 GRNDAAVS-PSFVEG 482
G A + F++G
Sbjct: 378 GEYTAVGNLMGFIQG 392
>gi|398828325|ref|ZP_10586526.1| NADH dehydrogenase, FAD-containing subunit [Phyllobacterium sp.
YR531]
gi|398218360|gb|EJN04870.1| NADH dehydrogenase, FAD-containing subunit [Phyllobacterium sp.
YR531]
Length = 431
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 114/449 (25%), Positives = 183/449 (40%), Gaps = 64/449 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ R+ I+G GFGGL T L + L+DQ +F+P+LY++ + + E
Sbjct: 10 RHRLVIVGAGFGGLVTVQNLRK------ADIDITLIDQRNHHLFQPLLYQVATSTLATSE 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA LL + FK+ LL DH+ T TV G + YD LVL+
Sbjct: 64 IAWPIRHLL-----RKFKNVKTLLGTVDHVD-------TAKRTVSTVDGETIPYDTLVLA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGC 252
GA FA TLEDA + R++ +E E ++ L+ ++G
Sbjct: 112 TGARHAYFGHDDWEPFAPGLKTLEDATMIRRRILTAFEKAEREPDPAKREELLTFVIIGG 171
Query: 253 GYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G +GVE+A T+++ R KG + I+ G+R VL A +L Y
Sbjct: 172 GPTGVEIAGTLADLARDTLKGDFRVIDPAMAKVVLIEGGSR-----VLGAFNEELS-AYA 225
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE--SQIFEADLVLWT 368
R + ++G V P + AD G+E A ++W
Sbjct: 226 QRALEKLG-VTVHVGNP----VTACHAD---------------GVEFAGHSLRAKTIIWA 265
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G + P + + P + G+ + L HP IF +GD++ + + +P
Sbjct: 266 AGVQ------ASPAAKWLNAPADRAGRLAVNPDLTAPDHPEIFVIGDTATVANGDKGNVP 319
Query: 429 ATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
A A QQ + A + D PFR+++ G++ +G+ A F++ L G
Sbjct: 320 GIAPAAKQQGAHVAKTIKARLAGDNEPKPFRYRHAGDLATIGKRAAVTDFGFIK---LKG 376
Query: 488 PIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
LA++ L +RL V +SWL
Sbjct: 377 YPAWWLWGLAHIYFLIGVRNRLAVALSWL 405
>gi|159029119|emb|CAO90108.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 459
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 191/454 (42%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L +
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGME-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|288925649|ref|ZP_06419581.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella buccae
D17]
gi|288337587|gb|EFC75941.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella buccae
D17]
Length = 432
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 171/415 (41%), Gaps = 74/415 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ R+ I+GGG GL ALRL +Q V+LVD++ F P++Y++ S ++
Sbjct: 8 NNQKRVVIVGGGLAGLQLALRLRHTDFQ------VVLVDKNNYNQFPPLIYQVASAGLEP 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I+ F L N +F+ L +D ++ H YD+LV
Sbjct: 62 SSISFPFRRLFQNQRNFYFRMGEALSVDNDERVLHTSFGTLH-------------YDYLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
L+ GA A P T+ +A ++ + +E E + SL+ + +V
Sbjct: 109 LAAGATTNFFGNVNIEREALPMKTVTEAIKLRNTVLQNLEKAETEDDEHHRQSLLNIVIV 168
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G SGVE+A ++E ++ T+ P P L A ++ + Y
Sbjct: 169 GGGPSGVEIAGALAE------------MKRTVMPRDYPD--------LDADRMNI---YL 205
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE---SQIF------- 360
V RR+ +K +S + + A+K+ + + + P ++ Q+
Sbjct: 206 VNADRRL------LKSMDSAS--SARAEKDLREMGVNVMPGYTVVDCRGGQVMLSDGSSI 257
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+A V+W G + P + H G+ TD VKG ++A+GD S +
Sbjct: 258 DARTVIWVSGIRASAIGGIPQTSIGHA------GRVLTDRFNNVKGMAGVYAIGDQSLVE 311
Query: 421 DSSGRPL--PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ PL P AQVA QQA NL + PF ++NLG M +GR A
Sbjct: 312 GDADYPLGHPQLAQVAIQQATNVAENLMRINRNEQPRPFTYRNLGTMATIGRKRA 366
>gi|429197004|ref|ZP_19188931.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces ipomoeae
91-03]
gi|428667329|gb|EKX66425.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces ipomoeae
91-03]
Length = 517
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 117/474 (24%), Positives = 198/474 (41%), Gaps = 91/474 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRIVIVGAGFAGYRTARTLSRLT---RNKADITLLNPTDYFLYLPLLPQVAAGILEPRR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ L + + + D + L + H A GG L YD LVL
Sbjct: 60 VTVSLTGTLRHVRLVLGEADAIDLDARTVH------YADPEGGVGTLA------YDRLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVG 251
+ G+ KL +PG AE A F L +A + D ++E D S VVG
Sbjct: 108 AAGSVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELAAGAADPKSCRSRCTFVVVG 167
Query: 252 CGYSGVELAAT----VSERLEEKGIVQAI-------NVETTICPTGTPGNREAALKVLSA 300
GY+G E+AA E + ++ + Q + ++ + P A +VL
Sbjct: 168 AGYTGTEVAAQGQLFTDELVRKQPLWQGVRPRWLLLDIAERVLPEMDEKLSHTADRVLRQ 227
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V++ +G V+ + + +L + +
Sbjct: 228 RGVEVRMGTSVK-------------------------EATHNGVLLT--------DGEFV 254
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+ ++W VG +P +P L LP+ RG+ + TL V G P +FA GD++A+
Sbjct: 255 DTRTLVWCVGVRP-----DPLAESL-GLPME-RGRLLVEPTLHVPGRPEVFACGDAAAVP 307
Query: 421 DSSGRP-------------LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
D + P TAQ A++Q AG N+ A++ P+R +LG ++
Sbjct: 308 DLTKPGSGGSGGSPPEKHFTPMTAQHAWRQGKVAGHNVAASLGLGEPKPYRHGDLGFVVD 367
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
LG AA +P GV L GP+ + + +L +P + R++V WL + +
Sbjct: 368 LGGVKAAANPL---GVPLSGPVAGAVTRGYHLAAMPGN--RVRVAADWLLDAVL 416
>gi|116491794|ref|YP_811338.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni PSU-1]
gi|421190401|ref|ZP_15647703.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB422]
gi|116092519|gb|ABJ57673.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni PSU-1]
gi|399970304|gb|EJO04609.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB422]
Length = 390
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 177/435 (40%), Gaps = 75/435 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-SLIRVAVVGCGYSGVEL 259
E + + GA EF P ++ A + L E L R D + + +AV G G++ +E
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKHLEETLARFQSSHDENDLHIAVCGAGFTSIEY 165
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNR------EAALKVLSARKVQLVLGYFVRC 313
+ RL + V+ N+ P + EAA KVL +LV Y V
Sbjct: 166 IGELLHRLPD--FVKRFNL---------PAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNY 213
Query: 314 IRRVG-EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
++ G EF E + + + GA+ I+ DK F A+ ++WT G
Sbjct: 214 LKNQGVEFYTETPITEVKKGAV--ISKDK-------------------AFNANTIIWTTG 252
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
K HV + R + L P F +GD SA+ GR P T
Sbjct: 253 VKG--SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTT 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
Q++ QA A N+ A +N++ PF + +LG + LG + SF+ L G
Sbjct: 306 GQISVAQATLAASNIIAKLNNQKTSPFTYHSLGTVCSLGPTNGVAELSFMGHWKLKG--- 362
Query: 491 HSARKLAYLIRLPTD 505
K+A L R+ D
Sbjct: 363 ---HKVAPLKRIVND 374
>gi|443648227|ref|ZP_21129929.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
DIANCHI905]
gi|443335274|gb|ELS49750.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 459
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 191/454 (42%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L +
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGME-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|433461574|ref|ZP_20419182.1| NADH dehydrogenase [Halobacillus sp. BAB-2008]
gi|432189906|gb|ELK46962.1| NADH dehydrogenase [Halobacillus sp. BAB-2008]
Length = 407
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 176/416 (42%), Gaps = 77/416 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I ILG G+GG+ TA++L+ + +D V LV++ L+E +G +
Sbjct: 2 KKPNIVILGAGYGGMMTAVKLQKNIGVND--ANVTLVNKHSYHYQTTWLHENAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D++ + ++ +D V + PS+ VLLE G V YD+LV+
Sbjct: 60 RTRIPIKDVIDTSKIKLIQDTVLEIKPSEK-------------RVLLEDGE-VTYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
SLG E + G E AF ++ ++ R+ R+ E + K + + V G
Sbjct: 106 SLGFEAATFGIQGLKEHAFTIGSI-NSARLIRQHIEYNFAKYNTEPDKKPERLNIVVGGA 164
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSA 300
G++G+E ++ R+ + + V+ I VE PT PG E A+ L A
Sbjct: 165 GFTGIEFVGELANRVPDLCREYDIPRDQVRIICVEA--APTALPGFDPQLVEYAMNSLEA 222
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V+ L ++ + +K + E K + +
Sbjct: 223 RGVEFKLSAMIKEV-------------------------TENKLVFE-----KDDQREEI 252
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-A 418
+ V+W G + N+ + + A RG+ E L +G+ +F +GD +
Sbjct: 253 GTNTVVWAAGVR--------GNSIVEESGFEANRGRIPVREDLRPEGYDDVFIVGDCALV 304
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
+ + + RP P TAQ+A Q+A+ NL I +R L PF G + LG +DA
Sbjct: 305 MNEEAERPYPPTAQIAIQEAEHTAGNLERLIKGERHLEPFVPDLKGTVASLGDSDA 360
>gi|332638625|ref|ZP_08417488.1| pyridine nucleotide-disulfide family oxidoreductase [Weissella
cibaria KACC 11862]
Length = 407
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 172/409 (42%), Gaps = 63/409 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K + ILG G+ GL L+ D + LVDQ+ L+E+ SG + A
Sbjct: 3 EKTNVVILGAGYAGLMALKVLQK--RADASFMSITLVDQNPYHYEATDLHEVASGALTAD 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I AD++ +F +DRV + + H V L + + +D+L++
Sbjct: 61 RITYPIADVVNPEMTEFIEDRVTKVDRAQH-------------RVELANHESIGFDYLII 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDS---LIRVAVVGCGY 254
LG E + +PG E+A P +++ A R+ + +++ E + +D+ + + V G G+
Sbjct: 108 GLGFESEDFGIPGVQEYALPMDSVDSAERIQQHITD-EMFAYRQDNDPRHLHIVVAGAGF 166
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK-----VQLVLGY 309
+GVEL +SE N E G N+ + V A++ Q ++ Y
Sbjct: 167 TGVELLGALSE-----------NRERYAEMAGVAPNQIQIMSVDGAKRPLSVFSQHLVDY 215
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ +R G S K I I D ++ G ++ A ++WT
Sbjct: 216 GLAVLRGRGAVIESGK-----GINAIEPD------VMHYADRETGESGEVI-AGTIIWTT 263
Query: 370 G----SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SG 424
G S + NR+ P L RI+ +GD +A DS +G
Sbjct: 264 GVRGSSVMAASGYQAKRNRMSVTPY-----------LQDPADDRIYIVGDVAAATDSETG 312
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ LP TAQ+A + AG N+ AA+ L PF +++LG + +G A
Sbjct: 313 QILPTTAQLALVMGEIAGKNVLAAVTGYELTPFTYKSLGTVCSIGNTSA 361
>gi|225874047|ref|YP_002755506.1| NADH dehydrogenase [Acidobacterium capsulatum ATCC 51196]
gi|225793503|gb|ACO33593.1| NADH dehydrogenase [Acidobacterium capsulatum ATCC 51196]
Length = 465
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 171/406 (42%), Gaps = 56/406 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ ++PR+ I+GGGF G + A L L V +VD+ F F+P+LY++ +
Sbjct: 14 EGRRPRVLIVGGGFAGTHAAKALAEL------PVDVTVVDRRNHFTFQPLLYQVALAVLS 67
Query: 136 AWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L N V+ D V +GV+ + S + ++YD+
Sbjct: 68 PADIAAPIRTILRNAKNVEVLMDEV--------VGVD-----LEKRQAMFRSRVAMDYDY 114
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVA 248
LV++ GA AE A T+E+A + R+ L+E + G +
Sbjct: 115 LVVATGATHSYFGNDHWAEVAPGLKTVENAIEIRRRVLLAFELAERQMLETGSHPPLNFV 174
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
+VG G +GVELA +++ + +++ T +V L+ G
Sbjct: 175 IVGAGPTGVELAGAITDIAKHYMRHDFRHIDPTKA------------------RVLLIEG 216
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLW 367
R + + + + + + + +++ + ++QP + ++Q +A + LW
Sbjct: 217 ----GPRVLPSYPEDLSKRAVAQLKGLGVEVYTNRKVSDIQPGYVMVGDNQKIDAVVTLW 272
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
G P +L + + RG ++TL +GHP +F GD + + G +
Sbjct: 273 AAGV------TASPLGKLLGVETDKRGAVMVNQTLNPEGHPELFVCGDLAHF-EQDGAQV 325
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P AQ A Q D + A + +P FR+ + G+M +GR A
Sbjct: 326 PGVAQPAMQMGDHVARMIEADLAGKPRKAFRYFDKGDMATIGRQAA 371
>gi|444313072|ref|ZP_21148633.1| NADH dehydrogenase [Ochrobactrum intermedium M86]
gi|443483605|gb|ELT46446.1| NADH dehydrogenase [Ochrobactrum intermedium M86]
Length = 423
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 174/404 (43%), Gaps = 59/404 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+GGGF GL+ L+S Q+ L+D+ +F+P+LY++ S E+ + +IA
Sbjct: 3 RLIIVGGGFAGLWATRSLKS------ADIQITLIDRRNHHLFQPLLYQVASAELASPDIA 56
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L VQ + V + P ++ V+L+ G +EYD L+++
Sbjct: 57 VPLRHILKKQRNVQIWLGEVIEVLPDRNV-------------VVLDDGRELEYDSLLIAT 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCG 253
GA P + A TLEDA + K+ +E E K + + A+VG G
Sbjct: 104 GATHAYFGNPQWEKHAPGIKTLEDAMHLRNKIFEAFEYAETEPDPEKKAAWLNFAIVGGG 163
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR--EAALKVLSARKVQLVLGYFV 311
+GVELA +S+ + + E G R EA K+L A +L +
Sbjct: 164 PTGVELAGALSDIAK-----HTLRGEFRSIDPGMATVRLIEAGPKILGAFPDELSFAAEL 218
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
+ +RR+G + KN + E+ L V+W G
Sbjct: 219 Q-LRRLG----------------VEVVKNCR--VTEINQHGYSLNGAFVPCRTVIWAAGV 259
Query: 372 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431
+ P RL ++PL+ G+ + ++ L V GH IF GD +++ + +GRP+P A
Sbjct: 260 Q-----ASPLGRRL-NVPLDRAGRVKVEKNLSVPGHGNIFVAGDLASI-EVNGRPVPGVA 312
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
A Q + L A + R F + + G + I+GR A V
Sbjct: 313 PAAKQMGAYVAELLKARLAGRQEPVFDYHDKGSLAIIGRMAAVV 356
>gi|421192949|ref|ZP_15650201.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB553]
gi|399973359|gb|EJO07534.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB553]
Length = 390
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 177/435 (40%), Gaps = 75/435 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-SLIRVAVVGCGYSGVEL 259
E + + GA EF P ++ A + L E L R D + + +AV G G++ +E
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKHLEETLARFQSSHDENDLHIAVCGAGFTSIEY 165
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNR------EAALKVLSARKVQLVLGYFVRC 313
+ RL + V+ N+ P + EAA KVL +LV Y V
Sbjct: 166 IGELLHRLPD--FVKRFNL---------PAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNY 213
Query: 314 IRRVG-EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
++ G EF E + + + GA+ I+ DK F A+ ++WT G
Sbjct: 214 LKNQGVEFYTETPIIEVKKGAV--ISKDK-------------------AFNANTIIWTTG 252
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
K HV + R + L P F +GD SA+ GR P T
Sbjct: 253 VKG--SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTT 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
Q++ QA A N+ A +N++ PF + +LG + LG + SF+ L G
Sbjct: 306 GQISVAQATLAASNIIAKLNNQKTSPFNYHSLGTVCSLGPTNGVAELSFMGHWKLKG--- 362
Query: 491 HSARKLAYLIRLPTD 505
K+A L R+ D
Sbjct: 363 ---HKVAPLKRIVND 374
>gi|425436250|ref|ZP_18816688.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9432]
gi|389679096|emb|CCH92111.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9432]
Length = 459
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 191/454 (42%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L +
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGME-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|425461954|ref|ZP_18841428.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9808]
gi|389825118|emb|CCI25375.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9808]
Length = 459
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 191/454 (42%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L +
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGME-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|269925710|ref|YP_003322333.1| NADH dehydrogenase (ubiquinone) [Thermobaculum terrenum ATCC
BAA-798]
gi|269789370|gb|ACZ41511.1| NADH dehydrogenase (ubiquinone) [Thermobaculum terrenum ATCC
BAA-798]
Length = 459
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/427 (24%), Positives = 180/427 (42%), Gaps = 79/427 (18%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
VLLVD++ +F P+LY++ +G V+ + G +F + V+ + D
Sbjct: 65 VLLVDRANFHLFTPILYQVATGGVEPDNVTHPVRYATQADGFRFQESNVQKISVEDK--- 121
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DR 229
C V + G I YD+LV++LGA + A E +F T+ D + +
Sbjct: 122 -----C-----VYTDDGPIY-YDYLVVALGATNNFFGLASAEENSFTLKTISDGIELRNH 170
Query: 230 KLSELERRNFGKDSLIR-----VAVVGCGYSGVELAATVSERLE----------EKGIVQ 274
+ ER +D +R +VG G +GVELAA++ + + G V+
Sbjct: 171 IIDAFERAEVEQDPEVRRRLLTFVIVGAGPTGVELAASLRDLASHVLLKEYPGIDPGEVR 230
Query: 275 AINVET--TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 332
+ VE I R+ A+K L ++ V+++L V + + G V+ + I
Sbjct: 231 VVLVEALDRILLALDDQLRQNAMKTLQSKGVEVLLNTPVADVEKGG-----VRIKDGSFI 285
Query: 333 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPL 390
P ++ V+WT G K PL+ + P + D
Sbjct: 286 P----------------------------SETVVWTAGVKANPLVADL--PGEKGRD--- 312
Query: 391 NARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449
G+ ++ + + HP I+ +GD + RPLP A VA A N+ +
Sbjct: 313 ---GRVRVNDFMQLPDHPEIYVIGDCAMYFMPGEQRPLPPNAPVAIAGGKTAAINIIHTL 369
Query: 450 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
+ PL P +++ GE++ LG+N+A + + G+ G IG + YL +L +++
Sbjct: 370 KNEPLEPLKYKYQGELVSLGKNNAVAN---IMGIKFSGFIGWLVWRAVYLYKLEGFKNKA 426
Query: 510 KVGVSWL 516
V V WL
Sbjct: 427 SVLVDWL 433
>gi|422302541|ref|ZP_16389903.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9806]
gi|389788274|emb|CCI16254.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9806]
Length = 459
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 190/454 (41%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVSVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|291436168|ref|ZP_06575558.1| dehydrogenase [Streptomyces ghanaensis ATCC 14672]
gi|291339063|gb|EFE66019.1| dehydrogenase [Streptomyces ghanaensis ATCC 14672]
Length = 505
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 118/465 (25%), Positives = 195/465 (41%), Gaps = 80/465 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I I+G GF G TA L L + +++L++ ++ F++ P+L ++ +G ++
Sbjct: 14 IVIVGAGFAGYRTARTLSRLA---RGRAEIVLLNPTDYFLYLPLLPQVAAGILEPRRATV 70
Query: 142 RFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
D L + + DR+ L + H GP GGT+ YD LVL+ G
Sbjct: 71 SLPDTLPQVRLVLGEADRIDLDGRTVHY--TGPEG--DGGTL--------AYDRLVLAAG 118
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVGCGY 254
+ KL +PG AE A F L +A + D ++E D + VVG GY
Sbjct: 119 SVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELATATDDPRSCAARCTFVVVGAGY 178
Query: 255 SGVELAA--------TVSERLEEKGIVQA---INVETTICPTGTPGNREAALKVLSARKV 303
+G E+AA V G+ +++ + P A KVL R V
Sbjct: 179 TGTEVAAHGQLFTDAQVGRHPMRTGMRPRWLLLDIADRVLPELDERLSRTADKVLRERGV 238
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ +G V+ + + +L + + +
Sbjct: 239 DVRMGTSVK-------------------------EATHEGVLLT--------DGEFVDTR 265
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
V+W VG +P +P L LP+ RG+ D L V G P +FA GD++A+ D
Sbjct: 266 TVVWCVGVRP-----DPLAESL-GLPME-RGRLLVDPHLRVPGRPEVFACGDAAAVPDPD 318
Query: 424 --GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
G+ P TAQ A++Q N+ A+ D +R ++LG ++ LG AA +P
Sbjct: 319 RPGKYTPMTAQHAWRQGKVCAHNVAASFGDGEWRAYRHKDLGFVVDLGGVKAAANPL--- 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVAL 526
GV L GP+ + + +L +P + R++V WL + + A+
Sbjct: 376 GVPLSGPVAGAVTRGYHLAAMPGN--RVRVAADWLLDAVLPRQAV 418
>gi|126173313|ref|YP_001049462.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS155]
gi|386340074|ref|YP_006036440.1| NADH dehydrogenase [Shewanella baltica OS117]
gi|125996518|gb|ABN60593.1| NADH dehydrogenase [Shewanella baltica OS155]
gi|334862475|gb|AEH12946.1| NADH dehydrogenase [Shewanella baltica OS117]
Length = 429
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 155/375 (41%), Gaps = 52/375 (13%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
+ LVD+S ++KP L+E+ G +D + D G ++ + ++ PS
Sbjct: 34 ICLVDRSPIHIWKPKLHEVAVGVIDQSLDGLLYRDHGLKNGYRYVRGEIEGCDPSGKTIQ 93
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G +L + L YD+LVL+LG+ GA E +LE+A R K
Sbjct: 94 LAPVYSDDGELLLADRAL--SYDYLVLALGSVSNTFNTKGAEENCIFLDSLENAERFHHK 151
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI---------VQAINV 278
L + + + + +VG G +GVELAA V E ++E G V I
Sbjct: 152 LLDALLQLNESQGKLSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKHHLDVHLIEA 211
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
I P A VL ++L LG V+ E +V + P
Sbjct: 212 SPKILPQLPEKVSARAQSVLDKIGIKLHLGVQVK--------EVTV---QGFVTP----- 255
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 398
+ + EA L +W G K P V + LP+ R Q +
Sbjct: 256 -----------------DGDVIEASLKVWAAGVKG--PAV---CAKFTSLPITPRNQIDV 293
Query: 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
D + VKG I+A+GD +AL +G+ +P AQ A Q AD N+ + D+ LPF
Sbjct: 294 DACMRVKGQEDIYAIGDCAALILENGKAVPPRAQSADQMADRLYKNIVNRLQDKAELPFV 353
Query: 459 FQNLGEMMILGRNDA 473
+++ G ++ L R A
Sbjct: 354 YKDYGSLVSLSRFSA 368
>gi|440752144|ref|ZP_20931347.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
TAIHU98]
gi|440176637|gb|ELP55910.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
TAIHU98]
Length = 459
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 190/454 (41%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVSVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|425442931|ref|ZP_18823165.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9717]
gi|389715893|emb|CCH99798.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9717]
Length = 456
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 191/454 (42%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+L+ + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILKDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA----IKGLESQIFEADLVL 366
R + + + + ++ + ++ + + ++G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVSVLQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|373948532|ref|ZP_09608493.1| NADH dehydrogenase [Shewanella baltica OS183]
gi|386325623|ref|YP_006021740.1| NADH dehydrogenase [Shewanella baltica BA175]
gi|333819768|gb|AEG12434.1| NADH dehydrogenase [Shewanella baltica BA175]
gi|373885132|gb|EHQ14024.1| NADH dehydrogenase [Shewanella baltica OS183]
Length = 429
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 152/375 (40%), Gaps = 52/375 (13%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
+ LVD+S ++KP L+E+ G +D + D G ++ + ++ PS
Sbjct: 34 ICLVDRSPIHIWKPKLHEVAVGVIDQSLDGLLYRDHGLKNGYRYVRGEIEGCDPSGKTIQ 93
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G +L + L YD+LVL+LG+ GA E +LE+A R K
Sbjct: 94 LAPVYSDDGELLLADRAL--SYDYLVLALGSVSNTFNTKGAEENCIFLDSLENAERFHHK 151
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI---------VQAINV 278
L + + + + +VG G +GVELAA V E ++E G V I
Sbjct: 152 LLDALLQLNESQGKLSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKHHLDVHLIEA 211
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
I P A VL ++L LG V+ + G
Sbjct: 212 SPKILPQLPEKVSARAQSVLDKIGIKLHLGVQVKEVTAQGFVTP---------------- 255
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 398
+ + EA L +W G K P V + LP+ R Q +
Sbjct: 256 -----------------DGDVIEASLKVWAAGVKG--PAV---CAKFTSLPITPRNQIDV 293
Query: 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
D + VKG I+A+GD +AL +G+ +P AQ A Q AD N+ + D+ LPF
Sbjct: 294 DACMRVKGQEDIYAIGDCAALILENGKAVPPRAQSADQMADRLYKNIVNRLQDKAELPFV 353
Query: 459 FQNLGEMMILGRNDA 473
+++ G ++ L R A
Sbjct: 354 YKDYGSLVSLSRFSA 368
>gi|228948797|ref|ZP_04111073.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228810854|gb|EEM57199.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 392
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L + F + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKGKDIDF------KIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|377830894|ref|ZP_09813885.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus mucosae
LM1]
gi|377555342|gb|EHT17030.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus mucosae
LM1]
Length = 401
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 177/410 (43%), Gaps = 73/410 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+ GL T + L+ V K ++ LV+Q++ L+E+ +G V I+
Sbjct: 3 KIVILGAGYAGLKTVVELQKKVA---KTAEITLVEQNDYHYEATSLHEVAAGNVAPEHIS 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++L + V+ KDRV + P V L + YD+ V++LG
Sbjct: 60 FGIREVL-SPAVKLIKDRVVKVDPD-------------AKQVELAEHAPLNYDYCVMALG 105
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFGKDSLIRVAVVGCGYSGVE 258
+ + GAAE + P + ++ A R+ L++ ++ R +++ V G G++G+E
Sbjct: 106 FVSETFGIKGAAENSLPMANVDQAARIAHHLNDQMMQYRADHNPDHLKIIVCGAGFTGIE 165
Query: 259 LA----------ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
LA A V+E ++ I+ I P ++ A+K++ +K QL L
Sbjct: 166 LAGALYDARKRLAKVAEVDPAAIKIKMIDAAPRILPMFDDKMKDYAIKLM--QKEQLTL- 222
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVL 366
+ +A++K+ + GA+ D+ Q+ E A ++
Sbjct: 223 ----------QGQAAIKEIKPGAVVYQTKDE------------------QLHEETAGTII 254
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-R 425
WT G P DLP RG+ + L + ++ LGD +A+ G R
Sbjct: 255 WTTGVS------GSPVMAASDLP-QRRGRVMVTDHLTAPDYDDLYVLGDVAAVMPPDGKR 307
Query: 426 PLPATAQVAFQQADFAGWNLWAAIN--DRPLLPFRFQNLGEMMILGRNDA 473
P P TAQ+A +A +L A + RP P+ + +LG + +G A
Sbjct: 308 PYPTTAQIALTMGIYAAKDLAARVTGGQRP-GPYSYHSLGTVASMGNTHA 356
>gi|269929064|ref|YP_003321385.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
gi|269788421|gb|ACZ40563.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
Length = 406
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 157/403 (38%), Gaps = 72/403 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
++ + ILGGG+ GL A+RL + + P +V LVD F + L+++ +G+
Sbjct: 4 ERTQEVVILGGGYAGLMAAVRL-----ANRRVPSRVTLVDAKAEFPERIRLHQVAAGQQL 58
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
P +LL TGV+F + R L P L T G L YDWL
Sbjct: 59 RRRSIP---ELLRGTGVEFMQGRASELDPEAQL----VAVQTRDGQRTLR------YDWL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
+ +LG++ L +PG + L+D + LER G RV +VG G +
Sbjct: 106 LYALGSQVDLSPIPGLHQHTL---ALDDRSTAKDLAARLERLGDG-----RVLIVGGGLT 157
Query: 256 GVELAATVSERLEEKGI--VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
G+E A ++ER I V A + + P G R+V G +R
Sbjct: 158 GIEAAVELAERFPRLAIELVTAGALGEDLSPAGAA----------HIRRVFERHGIALRE 207
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
R+ E + V + + G E F D+ LW G +
Sbjct: 208 HARIEEIQEGVAR-------------------------LAGGERIPF--DICLWAGGFR- 239
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P LP N RGQ D TL V GHP I GD++ G+PL +
Sbjct: 240 -----APGLAARAGLPTNERGQVIVDRTLQVPGHPEILVAGDAALAPGPGGKPLRMSCAA 294
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
AG L I + PFRF + + LGR+D +
Sbjct: 295 GQPMGAHAGDTLARLIRGQEPEPFRFSYILRCISLGRHDGLIQ 337
>gi|425449870|ref|ZP_18829703.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
7941]
gi|389769580|emb|CCI05638.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
7941]
Length = 459
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 191/454 (42%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L +
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGME-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|218235678|ref|YP_002369873.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
B4264]
gi|218163635|gb|ACK63627.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
B4264]
Length = 392
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 166/411 (40%), Gaps = 73/411 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYNKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L + + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKGQDIDL------KIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK---DSLIRVAVVGCGYSGV 257
++ +PG E + + DA ++ R + + R + K ++ + + G G +GV
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYRHVED-RIREYAKTKNEADATIVIGGGGLTGV 167
Query: 258 ELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLVL 307
EL +++ + + +N VE I P E A L AR V +
Sbjct: 168 ELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLT 227
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G + N+A ++ ++L+ + Q A+ +W
Sbjct: 228 GL---------------------PVTNVAGNE------IDLK------DGQKLVANTFVW 254
Query: 368 TVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
T G PL+ L +N RG+A D L H +F GDS+ + GR
Sbjct: 255 TGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPDGR 305
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
P P TAQ+A+Q + G+NL+AA+ + L F N G + LGR DA +
Sbjct: 306 PYPPTAQIAWQMGELIGYNLYAALEGKALEEFAPVNSGTLASLGRKDAVAT 356
>gi|425471841|ref|ZP_18850692.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
gi|389882200|emb|CCI37310.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
Length = 458
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 190/454 (41%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNEQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|422514058|ref|ZP_16590179.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA2]
gi|313807024|gb|EFS45522.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA2]
Length = 460
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 155/375 (41%), Gaps = 54/375 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G V YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPVSYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
R D + LE + +D V +VG G +GVE+A T++E +
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAE----------------MKS 198
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
G P A +S +V + L + + F+ +++ + D ++
Sbjct: 199 IGIP----AIFPDVSTDRVHVTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTA 252
Query: 345 ILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
I E+ + ++ + Q AD+V+W G + H N G+ TD TL
Sbjct: 253 IAEVREDSVLLKDGQTLPADMVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLL 306
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
VKG RIFA+GD + ++ P P AQ A Q + + PL F + + G
Sbjct: 307 VKGQDRIFAVGDGAI---NTEDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKG 363
Query: 464 EMMILGRNDAAVSPS 478
M +GRN A V S
Sbjct: 364 TMATIGRNSAVVQLS 378
>gi|158334388|ref|YP_001515560.1| pyridine nucleotide-disulfide oxidoreductase [Acaryochloris marina
MBIC11017]
gi|158304629|gb|ABW26246.1| pyridine nucleotide-disulphide oxidoreductase [Acaryochloris marina
MBIC11017]
Length = 415
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 180/442 (40%), Gaps = 64/442 (14%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA-WEIAPR 142
I+G GFGGL TA+ L +V L+D++ F P+LY++ + ++ W P
Sbjct: 2 IIGAGFGGLQTAVSL------GGAAARVTLIDRNNYHTFVPLLYQVATATLEPEWIALPI 55
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
L VQF + V+ + + + + + ++YD+LVL G++
Sbjct: 56 HKLLRRYKNVQFVQGNVETVDLT--------------ARRVQTAHITLQYDYLVLGTGSQ 101
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKD-----SLIRVAVVGCGYSG 256
L VPGA E A P TLEDA + L + +E+ KD L+ +A+VG G +G
Sbjct: 102 THLQGVPGAKEHALPLRTLEDAIALKHHLLQCIEQAAQTKDPDERRQLLTIAIVGGGATG 161
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VE+A + E + P P R+ ++++ + +L F +R
Sbjct: 162 VEMAGALVELCHQS------------WPKDYPWLRDDPVQLILVQSGSELLPEFPHPLRT 209
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ ++ +A+ + LEL + +WT G K P
Sbjct: 210 YTYKKLAILGVNIQVETKVASVHATH---LELDSGTR------IPCATTIWTAGVKAAHP 260
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
E LP R + +L ++ +P ++ALGD++ + D + L A A Q
Sbjct: 261 PTET------ALPQGHRDKIPVLSSLQLQQYPEVYALGDAAQVPDQT---LAGVAPEALQ 311
Query: 437 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILG--RNDAAVSPSFVEGVTLDGPIGHSAR 494
Q NL + PFR+ N G + I+G + P L G +G
Sbjct: 312 QGVCTARNLRRQLKGLTPQPFRYFNKGRLAIIGCFSGVGKIGP-----FPLRGFLGWFLW 366
Query: 495 KLAYLIRLPTDEHRLKVGVSWL 516
+ + P +RL + V+WL
Sbjct: 367 LAVHWVYSPGYRNRLMILVTWL 388
>gi|301056558|ref|YP_003794769.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
biovar anthracis str. CI]
gi|300378727|gb|ADK07631.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
biovar anthracis str. CI]
Length = 392
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 164/410 (40%), Gaps = 71/410 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 RPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIRVAVVGCGYSGVE 258
++ +PG E + + DA ++ + + +L R ++ + + G G +GVE
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDLIREYAKTKNEADATIVIGGGGLTGVE 168
Query: 259 LAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLVLG 308
L +++ + + +N VE I P E A L AR V + G
Sbjct: 169 LVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTG 228
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ N+A ++ ++L+ + Q A+ +WT
Sbjct: 229 L---------------------PVTNVAGNE------IDLK------DGQKLVANTFVWT 255
Query: 369 VG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
G PL+ L +N RG+A D L H +F GDS+ + GRP
Sbjct: 256 GGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDGRP 306
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 307 YPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|291288647|ref|YP_003505463.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Denitrovibrio acetiphilus DSM 12809]
gi|290885807|gb|ADD69507.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Denitrovibrio acetiphilus DSM 12809]
Length = 431
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 188/428 (43%), Gaps = 64/428 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K +V L+D++ +F PML E++SG V I ++ V+F +D+V
Sbjct: 27 KHVEVTLIDKNNYSLFTPMLPEVVSGNVKPDNIVLPLREICVKNSVRFVRDKV------- 79
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ V+ C + +E+ L +YD+L+++ G++ A E A F ++ DA
Sbjct: 80 -ISVDKDNNC----VICIENEL--KYDYLIVATGSKTNFRGNESAIENALQFKSITDA-- 130
Query: 227 VDRK---LSELERRNF-----GKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278
+D K + LE+ + K SL+ +V+G G +GVELA +++ ++ K + N+
Sbjct: 131 IDLKYLIIDHLEKASSMTSSDAKKSLLSFSVIGGGITGVELACEMNDFIKAKIKREYSNI 190
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP---ESGAIPNI 335
G+ E ++ +L Y+ + + E +A Q ESG NI
Sbjct: 191 ----------GSEEYSINILE---------YYKTILPSIDESQAQKAQEAVVESGI--NI 229
Query: 336 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 395
+ N + E + E +I + + +WT G + L + N G
Sbjct: 230 INNANVQEISKESIRFEQNGEQKILNSSITVWTAGV--------MGRDYLETISTNQTGD 281
Query: 396 AET--DETLCVKG--HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451
+ L +G IF +GDS A + + LP A +A QQ A N+ I+
Sbjct: 282 KRVFIEHELTPQGITDSNIFVIGDSCAYQ-YNEHILPPVAPLAMQQGIMAVINIVRNIDG 340
Query: 452 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 511
+P F + + G ++ LG+N++ V+ + G+ L G + K+ YL ++ + ++ V
Sbjct: 341 KPKKDFNYFHFGYLVSLGKNNSVVN---LFGLKLRGRFAYYVWKMLYLYKVGMFKKQIGV 397
Query: 512 GVSWLTKS 519
W+ S
Sbjct: 398 FFDWIMTS 405
>gi|52140463|ref|YP_086367.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus E33L]
gi|51973932|gb|AAU15482.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
E33L]
Length = 392
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 165/411 (40%), Gaps = 73/411 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK---DSLIRVAVVGCGYSGV 257
++ +PG E + + DA ++ + + E R + K ++ + + G G +GV
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEE-RIREYAKTKNEADATIVIGGGGLTGV 167
Query: 258 ELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLVL 307
EL +++ + + +N VE I P E A L AR V +
Sbjct: 168 ELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLT 227
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G + N+A ++ ++L+ + Q A+ +W
Sbjct: 228 GL---------------------PVTNVAGNE------IDLK------DGQKLVANTFVW 254
Query: 368 TVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
T G PL+ L +N RG+A D L H +F GDS+ + GR
Sbjct: 255 TGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDGR 305
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
P P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 306 PYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|91780329|ref|YP_555536.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia xenovorans LB400]
gi|91692989|gb|ABE36186.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia xenovorans LB400]
Length = 430
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 171/403 (42%), Gaps = 49/403 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + + V LVD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLLLATRLGNRLGRRGEA-HVTLVDRSPTHIWKPMLHTIAAGTTDVHQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC--THGGTVLLESGLIVEYDWLVLS 198
+ L + F R +C D +A G V++ G + YD LVLS
Sbjct: 65 VFY---LTHARAHGFTYRPGEMCGIDRDTQQIQLAALAMPNGEVVMGPGTL-GYDILVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
G+ PG E + A + + R+ ++ +RVA+VG G +GVE
Sbjct: 121 TGSRANDFGTPGVPEHCHFIDSQPQAEAFNEAIRSRIVRSVVENEPLRVAIVGAGATGVE 180
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LAA +S L+ V + + +I + +L LG + R +
Sbjct: 181 LAAELSHLLD----VASSYGDASI-------------------RARLHLGLYESAPRVLT 217
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKP---- 373
F + + + + ++ + E + ++ + ADL++W G K
Sbjct: 218 AFPPDISASSEALLRRLGFEVHTRTRVTEARAQRLRLNDGSEVAADLMVWAAGVKAPDFL 277
Query: 374 -LLPHVEPPN-NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPAT 430
LP +E + N+L P TL IFALGD ++L RPLP T
Sbjct: 278 GKLPGIEASHANQLFVRP-----------TLQTTHDDHIFALGDCASLTPPGNERPLPPT 326
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
AQVA QQA+ +L +N PL F F++ G ++ L +A
Sbjct: 327 AQVATQQAEHLAKHLPRWLNGEPLPEFTFRDFGALVSLSDYNA 369
>gi|50841641|ref|YP_054868.1| NADH dehydrogenase [Propionibacterium acnes KPA171202]
gi|289424391|ref|ZP_06426174.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK187]
gi|289427552|ref|ZP_06429265.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes J165]
gi|295129692|ref|YP_003580355.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK137]
gi|335055422|ref|ZP_08548203.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
434-HC2]
gi|354606122|ref|ZP_09024093.1| hypothetical protein HMPREF1003_00660 [Propionibacterium sp.
5_U_42AFAA]
gi|386023098|ref|YP_005941401.1| NADH dehydrogenase-like protein YumB [Propionibacterium acnes 266]
gi|387502516|ref|YP_005943745.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes 6609]
gi|407934533|ref|YP_006850175.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes C1]
gi|417930539|ref|ZP_12573915.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK182]
gi|422384122|ref|ZP_16464263.1| NADH dehydrogenase [Propionibacterium acnes HL096PA3]
gi|422386951|ref|ZP_16467068.1| NADH dehydrogenase [Propionibacterium acnes HL096PA2]
gi|422394129|ref|ZP_16474176.1| NADH dehydrogenase [Propionibacterium acnes HL099PA1]
gi|422424138|ref|ZP_16501089.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA1]
gi|422429276|ref|ZP_16506181.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA2]
gi|422436965|ref|ZP_16513812.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL092PA1]
gi|422447824|ref|ZP_16524556.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA3]
gi|422455327|ref|ZP_16531997.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA1]
gi|422460782|ref|ZP_16537416.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL038PA1]
gi|422475832|ref|ZP_16552277.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL056PA1]
gi|422476410|ref|ZP_16552849.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL007PA1]
gi|422479367|ref|ZP_16555777.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA1]
gi|422481878|ref|ZP_16558277.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA1]
gi|422484846|ref|ZP_16561213.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA2]
gi|422487955|ref|ZP_16564286.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA2]
gi|422489399|ref|ZP_16565726.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL020PA1]
gi|422492407|ref|ZP_16568715.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL086PA1]
gi|422497668|ref|ZP_16573941.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA3]
gi|422503885|ref|ZP_16580122.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA2]
gi|422504596|ref|ZP_16580830.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA2]
gi|422509064|ref|ZP_16585222.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA2]
gi|422514639|ref|ZP_16590757.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA2]
gi|422519572|ref|ZP_16595618.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL074PA1]
gi|422520460|ref|ZP_16596502.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL045PA1]
gi|422523425|ref|ZP_16599437.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA2]
gi|422525537|ref|ZP_16601539.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA1]
gi|422527984|ref|ZP_16603971.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA1]
gi|422531631|ref|ZP_16607579.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA1]
gi|422535009|ref|ZP_16610932.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA1]
gi|422536166|ref|ZP_16612074.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL078PA1]
gi|422543979|ref|ZP_16619819.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA1]
gi|422551585|ref|ZP_16627378.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA3]
gi|422554972|ref|ZP_16630742.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA2]
gi|422559385|ref|ZP_16635113.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA1]
gi|422567414|ref|ZP_16643040.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA2]
gi|50839243|gb|AAT81910.1| putative NADH dehydrogenase [Propionibacterium acnes KPA171202]
gi|289155088|gb|EFD03770.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK187]
gi|289159482|gb|EFD07673.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes J165]
gi|291375104|gb|ADD98958.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK137]
gi|313771303|gb|EFS37269.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL074PA1]
gi|313792734|gb|EFS40815.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA1]
gi|313803398|gb|EFS44580.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA2]
gi|313811668|gb|EFS49382.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA1]
gi|313817809|gb|EFS55523.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA2]
gi|313821366|gb|EFS59080.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA1]
gi|313824694|gb|EFS62408.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA2]
gi|313826358|gb|EFS64072.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA1]
gi|313832135|gb|EFS69849.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL007PA1]
gi|313832936|gb|EFS70650.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL056PA1]
gi|313839796|gb|EFS77510.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL086PA1]
gi|314926400|gb|EFS90231.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA3]
gi|314961500|gb|EFT05601.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA2]
gi|314964108|gb|EFT08208.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA1]
gi|314975372|gb|EFT19467.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA1]
gi|314977423|gb|EFT21518.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL045PA1]
gi|314980086|gb|EFT24180.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA2]
gi|314985236|gb|EFT29328.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA1]
gi|314986940|gb|EFT31032.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA2]
gi|314990566|gb|EFT34657.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA3]
gi|315078786|gb|EFT50808.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA2]
gi|315081739|gb|EFT53715.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL078PA1]
gi|315082945|gb|EFT54921.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA2]
gi|315086463|gb|EFT58439.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA3]
gi|315088179|gb|EFT60155.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA1]
gi|315096990|gb|EFT68966.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL038PA1]
gi|315107555|gb|EFT79531.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA1]
gi|327332670|gb|EGE74405.1| NADH dehydrogenase [Propionibacterium acnes HL096PA2]
gi|327333840|gb|EGE75557.1| NADH dehydrogenase [Propionibacterium acnes HL096PA3]
gi|327444692|gb|EGE91346.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA2]
gi|327446545|gb|EGE93199.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA2]
gi|327449011|gb|EGE95665.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA1]
gi|327457243|gb|EGF03898.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL092PA1]
gi|328757809|gb|EGF71425.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL020PA1]
gi|328759641|gb|EGF73240.1| NADH dehydrogenase [Propionibacterium acnes HL099PA1]
gi|332674554|gb|AEE71370.1| NADH dehydrogenase-like protein YumB [Propionibacterium acnes 266]
gi|333761928|gb|EGL39451.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
434-HC2]
gi|335276561|gb|AEH28466.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes 6609]
gi|340772157|gb|EGR94670.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK182]
gi|353557529|gb|EHC26897.1| hypothetical protein HMPREF1003_00660 [Propionibacterium sp.
5_U_42AFAA]
gi|407903114|gb|AFU39944.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes C1]
gi|456740654|gb|EMF65166.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes FZ1/2/0]
Length = 460
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 155/375 (41%), Gaps = 54/375 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
R D + LE + +D V +VG G +GVE+A T++E +
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAE----------------MKS 198
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
G P A +S +V + L + + F+ +++ + D ++
Sbjct: 199 IGIP----AIFPDVSTDRVHVTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTA 252
Query: 345 ILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
I E+ + ++ + Q AD+V+W G + H N G+ TD TL
Sbjct: 253 IAEVREDSVLLKDGQTLPADMVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLL 306
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
VKG RIFA+GD + ++ P P AQ A Q + + PL F + + G
Sbjct: 307 VKGQDRIFAVGDGAI---NTEDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKG 363
Query: 464 EMMILGRNDAAVSPS 478
M +GRN A V S
Sbjct: 364 TMATIGRNSAVVQLS 378
>gi|390441973|ref|ZP_10229996.1| Type 2 NADH dehydrogenase [Microcystis sp. T1-4]
gi|389834729|emb|CCI34122.1| Type 2 NADH dehydrogenase [Microcystis sp. T1-4]
Length = 458
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 190/454 (41%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ ++GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVVIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLPGIAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|116075668|ref|ZP_01472927.1| hypothetical protein RS9916_39421 [Synechococcus sp. RS9916]
gi|116066983|gb|EAU72738.1| hypothetical protein RS9916_39421 [Synechococcus sp. RS9916]
Length = 502
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 117/455 (25%), Positives = 183/455 (40%), Gaps = 66/455 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + +V L+D+ +F+P+LY++ +G V
Sbjct: 18 RHAPHVVIVGGGFAGVSACKALA------NADVRVTLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V + P+D V A +YD L
Sbjct: 72 GDVATPLRQLVGKQRNVQVLLGEVTEINPTDKQIVFNSKA--------------YDYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAV 249
VL+ G+ FA P LE A + R+L +E + L V +
Sbjct: 118 VLATGSGSTFFGHEQWRTFAPPMKILEHAEEIRRRLLMAIEQAEQSPDEAARQFLQTVVI 177
Query: 250 VGCGYSGVELAATVSERLEE--KGIVQAINVETTICPTGTPGNR--EAALKVLSARKVQL 305
VG G +G E+A VSE + + + +N + T PG R +A + LS ++ Q
Sbjct: 178 VGGGPTGCEMAGAVSELMRNAMRREFKQLNPDHTRIVLVDPGERLLKAMPESLS-KQAQT 236
Query: 306 VLGYFVRCIRRVG---EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
L ++G +F+A V+ + G + + + L LQ A
Sbjct: 237 TL-------EKLGVEMQFKARVQTMQPGEVTMSTPEGD-----LRLQAAT---------- 274
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRD 421
V+WT G +P H+ LN G+ +K HP I +GD S
Sbjct: 275 --VIWTAGVRP--SHLGKKLADATGCELN-HGRVVVQPDFSIKEHPEIRVVGDLCSYHHT 329
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
SSG PLP A A Q F G ++ A + F + + G M +L R DA +
Sbjct: 330 SSGNPLPGMAGPATQAGGFVGKDIAAIVAGSKRPNFNWFDFGSMAVLDRVDAVAD---LR 386
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G G IG LA+L +P E+R + + W+
Sbjct: 387 GFKFSGGIGWILWALAHLAFMPERENRWTLLIKWM 421
>gi|119774073|ref|YP_926813.1| NADH dehydrogenase [Shewanella amazonensis SB2B]
gi|119766573|gb|ABL99143.1| NADH dehydrogenase [Shewanella amazonensis SB2B]
Length = 429
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 153/380 (40%), Gaps = 56/380 (14%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
K +LL+D+S ++KP L+E+ G +D + D G ++ + ++ L P
Sbjct: 31 KADILLIDRSPIHIWKPKLHEVAVGAIDQSIEGLLYRDHGLKNGYRYQRGSLEALDPDAK 90
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
A + LL +EYD+LVL+LG PGA L++A +
Sbjct: 91 --TIQLSALYNERQELLMGPRTIEYDYLVLALGGVSNSFNTPGAESHCIFLDNLQNAEQF 148
Query: 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA---TVSERLEEKGI---------VQA 275
R+L + S + + +VG G +GVELAA V E + E G +
Sbjct: 149 HRQLLDGLMLLDETQSRLSIGIVGAGATGVELAAELHHVVESVREFGYQNISKQHLDIHL 208
Query: 276 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335
I I P A VL + L LG V+ + + G F
Sbjct: 209 IEAAPKILPQLPDRVSGRAQAVLDKIGIHLHLGVQVKEVTKEG-FTTQ------------ 255
Query: 336 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNAR 393
+ + AD+ +W G V+ PN + L LP+ R
Sbjct: 256 --------------------DGNLIRADIRVWAAG-------VKGPNVFSDLSKLPITPR 288
Query: 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453
Q E D + VKGH I+ALGD + L + G+P+P AQ A Q A+ N+ + +
Sbjct: 289 NQVEVDACMRVKGHTDIYALGDCAQLILADGKPVPPRAQAASQMAETLYHNILNRLAGQA 348
Query: 454 LLPFRFQNLGEMMILGRNDA 473
PF +++ G ++ L R A
Sbjct: 349 EAPFEYRDYGSLVSLSRFSA 368
>gi|425444974|ref|ZP_18825014.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9443]
gi|389735123|emb|CCI01309.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9443]
Length = 459
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 187/455 (41%), Gaps = 67/455 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEI-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+I +P L + D + P G V+LE + YD L
Sbjct: 57 ADISSPLRLILRGHENTDILLDHAIDIDPVK-------------GEVILEDHPPIAYDQL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAV 249
V++ G +A T+EDA + R++ +E E + +L+ +
Sbjct: 104 VIATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDGEKRQALLTFVI 163
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
VG G +GVELA ++E + + + I PT EA + +L
Sbjct: 164 VGGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD------- 206
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLV 365
R + + + + ++ + ++ + + +G ++ A+ +
Sbjct: 207 -----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETI 261
Query: 366 LWTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
LW G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 262 LWAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFA 314
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV
Sbjct: 315 HQGDKPLPGIAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFV 374
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ G I A++ L +++L V V W
Sbjct: 375 K---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|294501678|ref|YP_003565378.1| NADH dehydrogenase YumB [Bacillus megaterium QM B1551]
gi|294351615|gb|ADE71944.1| NADH dehydrogenase YumB [Bacillus megaterium QM B1551]
Length = 404
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 180/419 (42%), Gaps = 83/419 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP+I ILG G+GG+ T + L+ + D +++LV++++ L+E+ +G +
Sbjct: 2 KKPKIVILGAGYGGIMTIVNLQKKLGASD--AEIVLVNKNDYHYETTWLHEVSAGTIHQD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L+ V F KD V + + VLLE+ + YD+LV+
Sbjct: 60 RSRVPVKNLINTNKVTFIKDTVVDIKLDEK-------------RVLLENSELT-YDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFGKDSLIRVAV 249
+LG E + + G E+AF +++ A ++ + +E+E+R D L+ + V
Sbjct: 106 ALGYEAETFGIKGLKEYAFTITSINAARQIREHIDYVFATYNNEVEKR----DELLTIIV 161
Query: 250 VGCGYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKV 297
G G++G+E ++ R+ + + V+ I VE PT PG E A+
Sbjct: 162 GGAGFTGIEFVGELANRVPQLCKEFDIPREKVRVICVEA--APTALPGFDPELVEYAVTQ 219
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L + ++ +G ++ + E G I + D + E++ A
Sbjct: 220 LERKGIEFKIGTAIK------------ECTEEGIIV------SKDDQVEEIKSAT----- 256
Query: 358 QIFEADLVLWTVGSKPLLPHV-EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
V+W G + HV E N RG+ + +L GH +F +GD
Sbjct: 257 -------VVWAAGVRG--SHVIEKAGFE------NMRGRVKVSNSLLAPGHEDVFVIGDC 301
Query: 417 SALRD-SSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
S + + + RP P TAQ+A QQ N+ + + L F+ G + LG +DA
Sbjct: 302 SLMINPETERPYPPTAQIAMQQGGTCAENISRLMKGQKELSEFKPDIKGTVCSLGHDDA 360
>gi|258543121|ref|YP_003188554.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01]
gi|384043043|ref|YP_005481787.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-12]
gi|384051560|ref|YP_005478623.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-03]
gi|384054667|ref|YP_005487761.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-07]
gi|384057902|ref|YP_005490569.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-22]
gi|384060543|ref|YP_005499671.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-26]
gi|384063835|ref|YP_005484477.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-32]
gi|384119844|ref|YP_005502468.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634199|dbj|BAI00175.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01]
gi|256637259|dbj|BAI03228.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-03]
gi|256640311|dbj|BAI06273.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-07]
gi|256643368|dbj|BAI09323.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-22]
gi|256646423|dbj|BAI12371.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-26]
gi|256649476|dbj|BAI15417.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-32]
gi|256652462|dbj|BAI18396.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655520|dbj|BAI21447.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-12]
Length = 430
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 158/393 (40%), Gaps = 33/393 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I I+GGG GL A RL + + K ++ L+D+S V+KPML+ +G V
Sbjct: 4 KSEILIVGGGVAGLALATRLGKTLGRHGKA-RITLIDKSFSHVWKPMLHCFAAGTVQNEN 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F ++ +F+ V + V P+ + G VL + YD +VLS
Sbjct: 63 DRISFMAQASSHNFEFWPGEVVSIDREKREVVLSPLHASDGSKVL--DSRTMTYDAIVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
+G+ PG E L +A + K ++F +S + +A+VG G +G +
Sbjct: 121 IGSRANDFGTPGVLENCLFIDNLVEANAFNEKFRMEILKSFADNSELDIAIVGGGATGTQ 180
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LAA + + LE IV + +L +L + R +
Sbjct: 181 LAAELHKSLE---IVDPV-----------------SLHAFGKAPPKLSITLLQSGARILP 220
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF-EADLVLWTVGSKPLLPH 377
F SV + I + + + P L+ A L +W G K P
Sbjct: 221 AFPESVSMAAQQELERIGVNVRTSARVAAADPTGFTLKDGTHVPATLRVWAAGVKA--PE 278
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
V L L+ GQ LC RIFA+GD S + D PLPATAQVA QQ
Sbjct: 279 V---TKTYGGLSLSRSGQINVKPNLCSVDDDRIFAMGDCSYIVDD---PLPATAQVARQQ 332
Query: 438 ADFAGWNLWAAINDRPLLP-FRFQNLGEMMILG 469
A +L A + +P F N G ++ LG
Sbjct: 333 AHHLAQHLPAWLESGKEVPSCIFHNKGAIVALG 365
>gi|389815644|ref|ZP_10206907.1| NADH dehydrogenase, FAD-containing subunit [Planococcus antarcticus
DSM 14505]
gi|388465850|gb|EIM08164.1| NADH dehydrogenase, FAD-containing subunit [Planococcus antarcticus
DSM 14505]
Length = 404
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 176/408 (43%), Gaps = 61/408 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P I +LG G+GGL T + L+ ++ D + L++++E L+E +G +
Sbjct: 2 KRPSILVLGAGYGGLTTVVNLQKVLSAD--AADITLINKNEYHYESTWLHEAAAGTLLPE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ D++ + V+F + V + + V G T G YD++V+
Sbjct: 60 QVRYDIKDVIDSVKVKFVQATV------EAIDVVGKKVTTDNGEFT--------YDYIVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G ++A + ++ A R R+ E + + DS + + V G
Sbjct: 106 ALGFEGETFGIEGLDKYALSIANVK-AARYIREHIEFQFATWSAEPVKDDSRLTIIVGGA 164
Query: 253 GYSGVELAATVSERLEEKGIVQAINVET----TICPTGTPGNREAALKVLSARKVQLVLG 308
G++G+E ++ R+ E + + +V +C EAA VL +LV
Sbjct: 165 GFTGIEFLGELANRVPE--LCKEFDVPREKVRVVCV-------EAAPMVLPGFDPELV-N 214
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
Y V + G E S+ P A P K D + +A V+W
Sbjct: 215 YAVSNLESKG-IEFSIGTPVVEATPEGVKVKKGDDHF------------DFIKAGTVVWA 261
Query: 369 VGSKPLLPHVEPPNNRLHD-LPL-NARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGR 425
G + NRL + P+ N R + + D+ L G+ +F +GD + + + + R
Sbjct: 262 AGVR---------GNRLIEATPIENMRARVKVDKDLRAPGYDDVFIIGDCALMINEETNR 312
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P P TAQ+A QQ + NL A +ND + F G + LG +DA
Sbjct: 313 PYPPTAQIAMQQGESVAKNLKALMNDETTIEFVPDLKGTVCSLGDDDA 360
>gi|309790567|ref|ZP_07685122.1| AD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillochloris trichoides DG-6]
gi|308227369|gb|EFO81042.1| AD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillochloris trichoides DG6]
Length = 392
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 168/405 (41%), Gaps = 50/405 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVL-LVDQSERFVFKPMLYELLSGEVDAWEI 139
+I ILG G+GGL TA+ LE L+ V+ L+DQ+ L+ + D+
Sbjct: 2 KIVILGAGYGGLRTAMNLEKLLRAHQMTDTVITLIDQNPYHQLIQELHHTATDGSDSRAA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ ++F RV+ + P + V+L G + Y+ LV+ L
Sbjct: 62 IYEIDQLIRGRQIEFICGRVEAILPGEQ-------------AVVLNDGQRISYERLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSEL----ERRNFGKDSL-IRVAVVGCG 253
G+ VPGA E P T DA + D +++ E R+ + L + A++G G
Sbjct: 109 GSITDFHGVPGAPEHTLPLRTYNDAVAIRDHVIAQFKAASEMRDAKEQRLALTTAIIGGG 168
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
Y+G +LA A+ V+ TG P E + +L V +L F R
Sbjct: 169 YTGCQLAGEF-----------AVWVDRLCRDTGAP-RSEVRIALLDRHDV--LLHQFGRW 214
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
V E ++ ++ N D +E Q ++ +++ A ++W G +
Sbjct: 215 ANDVAERVLDRQR--------VSIYLNIDVEAVEPQ-LLRVSGNRVLRAGTIIWAAGVRA 265
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQ 432
P LP + G+A D L V+ IF LGD +A+ G +PATA
Sbjct: 266 ------PDLIAQAGLPTDKMGRARVDRYLRVEDREDIFVLGDCAAIPAGLGDETVPATAS 319
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
A +Q + L+ I R ++ LGE++ LG +D +P
Sbjct: 320 YAMRQGEHLAEALFDEIQGRAARAYQPLKLGELVSLGPDDGVGTP 364
>gi|339018557|ref|ZP_08644689.1| NADH dehydrogenase [Acetobacter tropicalis NBRC 101654]
gi|338752311|dbj|GAA07993.1| NADH dehydrogenase [Acetobacter tropicalis NBRC 101654]
Length = 430
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/433 (28%), Positives = 183/433 (42%), Gaps = 63/433 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I I+GGG GL A RL + + K ++ L+D+S V+KPML+ +G V
Sbjct: 4 KSEILIVGGGVAGLALATRLGKTIGRQGKA-RITLIDKSFSHVWKPMLHCFAAGTVLNEN 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F ++ +F+ V + + V P+ + G T +LES ++YD ++L+
Sbjct: 63 DRISFISQASSHHFEFWPGEVISVDRTKREVVLSPLHASDG-TKVLES-RTLKYDAIILA 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
+G+ PG AE L +A + K ++F S + +A+VG G +G +
Sbjct: 121 VGSCANDFGTPGVAEHCLFIDNLIEANSFNEKFRMEILKSFANSSKLDIAIVGGGATGTQ 180
Query: 259 LAATVSERLEEKGIVQAINVE----------TTICPTG---TPGNREAALKVLSARKVQL 305
LAA + + LE IV +++ T+ +G P E+ ++A+K
Sbjct: 181 LAAELHKSLE---IVDPLSLHAFGKAPPKLSVTLLQSGPRILPAFPESV--SIAAQKELE 235
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
LG VR RV +A+ +IL+ + A L
Sbjct: 236 RLGVTVRTSSRVAAADAT-------------------GFILK--------DGSHIAATLR 268
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G K P V L LN GQ L RIFA+GD S + D
Sbjct: 269 VWAAGVKA--PEVTKAYG---GLSLNRSGQIMVKPNLSSVDDDRIFAMGDCSFIAD---E 320
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGR-NDAAVSPSFVEGV 483
PLPATAQVA QQA +L A + +P F N G ++ LG N A P G
Sbjct: 321 PLPATAQVARQQAHHLAQHLPAWLEHGKEVPSCIFHNKGAIVALGNYNGWAALPG---GT 377
Query: 484 TLDGPIGH--SAR 494
L G I H SAR
Sbjct: 378 VLGGGIMHGLSAR 390
>gi|228942236|ref|ZP_04104776.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228975166|ref|ZP_04135725.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981805|ref|ZP_04142100.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis Bt407]
gi|384189181|ref|YP_005575077.1| NADH dehydrogenase [Bacillus thuringiensis serovar chinensis CT-43]
gi|410677510|ref|YP_006929881.1| NADH dehydrogenase-like protein YjlD [Bacillus thuringiensis Bt407]
gi|423566047|ref|ZP_17542322.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MSX-A1]
gi|452201588|ref|YP_007481669.1| NADH dehydrogenase [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228777917|gb|EEM26189.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis Bt407]
gi|228784687|gb|EEM32707.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228817570|gb|EEM63655.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942890|gb|AEA18786.1| NADH dehydrogenase [Bacillus thuringiensis serovar chinensis CT-43]
gi|401192607|gb|EJQ99620.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MSX-A1]
gi|409176639|gb|AFV20944.1| NADH dehydrogenase-like protein YjlD [Bacillus thuringiensis Bt407]
gi|452106981|gb|AGG03921.1| NADH dehydrogenase [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 392
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|119483390|ref|ZP_01618804.1| hypothetical protein L8106_05036 [Lyngbya sp. PCC 8106]
gi|119458157|gb|EAW39279.1| hypothetical protein L8106_05036 [Lyngbya sp. PCC 8106]
Length = 564
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/458 (22%), Positives = 191/458 (41%), Gaps = 83/458 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+G GF G+ TA ++ + VLL+D++ F P+LY++ +G + ++
Sbjct: 6 QVVIVGAGFSGI-TASKIIA-----QAGVNVLLIDRNSYHTFIPLLYQVATGLLQPQQVI 59
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ +L N +F + V +H + T+ G + +Y++L+L+
Sbjct: 60 YPVSHILKNYPQARFLQAEV------NHTDFEHHIVHTNAGEI--------DYNYLILAT 105
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFGKDS---LIRVAVVGCG 253
G++P+ +PGA+E+ P L DA ++ + L E ++ + L+ +VG G
Sbjct: 106 GSQPQFAEIPGASEYGKPLVLLSDAVKLRQHLLTCIEQAKQELSPEQCKMLLTFVIVGGG 165
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG----- 308
+GVE+A + E L ++ P ++ + +L + +L++
Sbjct: 166 PTGVEMAGGLCELLN------------SLLAKNHPKLQQLSEVILLQSRDRLLVNFPEKL 213
Query: 309 --YFVRCIRRVG---EFEASVKQ--PESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
Y +C++R G +F V++ PES +ELQ I
Sbjct: 214 SLYTAQCLQRKGVKLQFSTRVQRVSPES----------------VELQ------NGTIIP 251
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
+WT G + P +L +G+ TL + + ++A+GD + ++
Sbjct: 252 TATTIWTAGVE------ANPATDTENLSTARKGKIVVQPTLQIPNYDHVYAIGDVAYVKL 305
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
L A A QQ + N+ I + PF + + G I+GRN VS +
Sbjct: 306 GD-EALAGVAPEALQQGEATARNILLQIRGKSPQPFEYIDKGRAAIIGRNAGVVSK---D 361
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKS 519
+ L G +G + LP +RL V SW+ S
Sbjct: 362 KLQLQGILGWLIWLGIHFYYLPGGRNRLNVVYSWIRDS 399
>gi|110597019|ref|ZP_01385308.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium ferrooxidans DSM 13031]
gi|110341210|gb|EAT59675.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium ferrooxidans DSM 13031]
Length = 431
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/447 (22%), Positives = 174/447 (38%), Gaps = 63/447 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDA 136
K + I+GGGF G+ A L + KP ++ ++D+ +F+P+LY++ +
Sbjct: 2 KKHVVIVGGGFAGINAAKVLGN-------KPDIEITIIDRKNYHLFQPLLYQVAMAALGE 54
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA ++LAN + FK V+ + V T YD+L
Sbjct: 55 GDIAAPLRNMLANYRNITVFKGIVRSVDIEKKTIVTDFREIT--------------YDYL 100
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------FGKDSLIRVAV 249
+L+ G + EFA TL A + R++ E R + L+ +
Sbjct: 101 ILACGVQHHYFGNNQWEEFAPGLKTLAQAKEIRRRVMEAYERAERTTDFVERKKLLTFII 160
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
VG G +GVELA ++ E +R K +L +
Sbjct: 161 VGGGPTGVELAGSIGEM-----------------------SRYTLSKFYRNIDPKLTRIF 197
Query: 310 FVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
V R+ G F + + ++ + ++ + + + ++ EA VLW
Sbjct: 198 IVEAAPRILGSFSPDLASKATRSLEKLGVQVWTNSMVSNVDENGVQIGNERIEAATVLWA 257
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G + D+ + G+ DE L + HP IF GD + + GR LP
Sbjct: 258 AGVTA------TGIGKTMDVDTDRIGRIIVDEDLSIPQHPEIFVGGDLANFQLEDGRTLP 311
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
A VA QQ G N+ + R FR+++ G+M +G+N A V + DG
Sbjct: 312 GLAPVALQQGRAIGKNILLDLKGRTRKLFRYRDKGQMATIGKNKAIVEFG---SLKFDGI 368
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ L ++ L + HR+ V + W
Sbjct: 369 LAWFTWLLVHIYFLTSFRHRVFVLLQW 395
>gi|206970441|ref|ZP_03231394.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH1134]
gi|228955332|ref|ZP_04117340.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229082313|ref|ZP_04214776.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock4-2]
gi|229153257|ref|ZP_04281435.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus m1550]
gi|229181361|ref|ZP_04308690.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus 172560W]
gi|229193347|ref|ZP_04320297.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus ATCC 10876]
gi|423411157|ref|ZP_17388277.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG3O-2]
gi|423427188|ref|ZP_17404219.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG3X2-2]
gi|423433058|ref|ZP_17410062.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG4O-1]
gi|423438482|ref|ZP_17415463.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG4X12-1]
gi|423507431|ref|ZP_17483999.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HD73]
gi|423573253|ref|ZP_17549372.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MSX-D12]
gi|449092090|ref|YP_007424531.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|206735018|gb|EDZ52187.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH1134]
gi|228590148|gb|EEK48017.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus ATCC 10876]
gi|228602097|gb|EEK59589.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus 172560W]
gi|228629861|gb|EEK86512.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus m1550]
gi|228700745|gb|EEL53268.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock4-2]
gi|228804465|gb|EEM51076.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401108173|gb|EJQ16105.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG3O-2]
gi|401109373|gb|EJQ17297.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG3X2-2]
gi|401112970|gb|EJQ20842.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG4O-1]
gi|401116432|gb|EJQ24271.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG4X12-1]
gi|401215259|gb|EJR21977.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MSX-D12]
gi|402444034|gb|EJV75924.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HD73]
gi|449025847|gb|AGE81010.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis serovar kurstaki str. HD73]
Length = 392
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 165/412 (40%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + L F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKALEEFAPVNSGTLASLGRKDAVAT 356
>gi|256370592|ref|YP_003108417.1| putative type II NADH dehydrogenase [Candidatus Sulcia muelleri
SMDSEM]
gi|256009384|gb|ACU52744.1| putative type II NADH dehydrogenase [Candidatus Sulcia muelleri
SMDSEM]
Length = 416
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/463 (22%), Positives = 200/463 (43%), Gaps = 89/463 (19%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ R+ I+G GFGG A +L + K Q++L+D++ F+P+LY++ + +
Sbjct: 9 PNTNLKRVVIIGSGFGGFQVASKL------NRKFLQIVLIDKNNYHTFQPLLYQVATFGL 62
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ IA ++ N FF+ L + + + + ++ G + YD+
Sbjct: 63 EPDSIAKSIRTIINNF---FFR-----LAKVNFIDLKTQIIFSNMGELY--------YDY 106
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR-----VDRKLSELERRNFGKDSLI-RVA 248
L+L+ G++ +FA P TLE+A + R S L N+ K L+
Sbjct: 107 LILATGSQTNFFGKKNIEKFALPMKTLEEALNLRNWILQRFESALYETNYKKQCLLMNFV 166
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
+VG G +GVELA +++E +++I P P L +K+++
Sbjct: 167 IVGGGPTGVELAGSLAE------------FKSSIFPKDYPE--------LDNKKIKI--- 203
Query: 309 YFVRCIRRV--GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL-- 364
+ ++ +R+ G E+S K+ + N+ + + L +K + +I +
Sbjct: 204 HLIQATKRLLDGMSESSSKKALK-YLKNMGVN-------VWLNNPVKDYDGKILSTNKGK 255
Query: 365 -----VLWTVGSK-PLLPHVEPP---NNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
V+WT G K L+ ++ NNR+ + D VKG +FA+GD
Sbjct: 256 LKSINVIWTAGVKGALIKGLKKKYLANNRI-----------QVDCFNKVKGEKNLFAIGD 304
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ ++ +G P+ A A +Q N + + L+PF + N M I+GRN A
Sbjct: 305 VAVMK-PNGHPMIALP--AIKQGIHLAKNFNRFFSKKQLIPFNYHNKITMAIIGRNKAVC 361
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
F++ + G +LI++ ++L ++W T+
Sbjct: 362 DIFFLK---ISGFFAWLIWMSIHLIKIVGFRNKLLTLINWGTQ 401
>gi|256424048|ref|YP_003124701.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chitinophaga pinensis DSM 2588]
gi|256038956|gb|ACU62500.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chitinophaga pinensis DSM 2588]
Length = 448
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/461 (23%), Positives = 188/461 (40%), Gaps = 90/461 (19%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF G+ A +L Q DK+ + LVD++ F P++Y+L +G ++ I
Sbjct: 12 KVVIIGGGFAGINLAQKL-----QRDKRFDITLVDKNNYNFFPPLIYQLATGFLETSSIC 66
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
F L + + F + + P+ H T+ L +G + +YD+LV +
Sbjct: 67 YPFRKLFRDKPNLHFHMGEFQKVDPAAH-------------TIYLNNGEL-QYDYLVFAT 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCG 253
G E + A P T+ DA + +R L LE + KD + R + + G G
Sbjct: 113 GTETNYFGNDNIKKRAIPMKTVNDALEMRNRLLKRLEIASITKDPIERKKLTTIVIAGGG 172
Query: 254 YSGVELAATVSE-----------RLE-EKGIVQAINVETTICPTGTPGNREAALKVLSAR 301
+GVE++ ++E LE + G + +N ++ +P +++ L
Sbjct: 173 PTGVEVSGMLAELRKYVIRKDYPELEGQGGEIYLVNGGESLLEPMSPKSQKHTYNALRR- 231
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
LG ++ RV +F D+ IL
Sbjct: 232 -----LGVKIKLKTRVKDFV-------------------DDQVILN--------NGDTIH 259
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHD-LPLNARG---QAETDETLCVKGHPRIFALGDSS 417
++W G LH+ +P+ + G + TD V G I+A+GD+
Sbjct: 260 TSTLIWAAGVTAY----------LHEGIPIASTGPGRRMMTDAFNRVIGVDDIYAIGDTC 309
Query: 418 ALRDSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ S P P AQVA QQ N ++++ L PF + + G M I+GRN+A
Sbjct: 310 LTKTDSNFPEGHPQLAQVALQQGRNLAKNFSLMVDNKQLKPFSYVDKGTMAIIGRNNAVA 369
Query: 476 S-PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
PS + +G I + +++ L +RLK +W
Sbjct: 370 DIPS--PKLHFNGFIAWAMWLFVHVMALINYRNRLKTMYNW 408
>gi|444916942|ref|ZP_21237050.1| NADH dehydrogenase [Cystobacter fuscus DSM 2262]
gi|444711588|gb|ELW52527.1| NADH dehydrogenase [Cystobacter fuscus DSM 2262]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 115/452 (25%), Positives = 185/452 (40%), Gaps = 71/452 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
K + + I+G GFGGL A +L+ K P +V +VD+ +F+P+LY++ + +
Sbjct: 11 KDQHHVVIVGAGFGGLQAARKLQ-------KAPVKVTVVDRYNHHLFQPLLYQVATAVLS 63
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+I+ +L Q LL + + V + GG V YD L
Sbjct: 64 PADISAPIRSILRGRNTQV------LLAEARSVDVARKVLVCDGGEV--------PYDTL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAV 249
VL+ GA P A A TL DA + +R L LE D + +
Sbjct: 110 VLATGATHSYFNHPEWAHVAPGLKTLNDAVAIRERVLLSLEAAERETDPERQAEWLTFVI 169
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
+G G +GVELA +S L ++T A +VL + VL
Sbjct: 170 IGGGPTGVELAGAISYMLRHSLPRDFRRIDT------------AKARVLLLEGLPRVLTQ 217
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ E A+ ++ + + + ++ + + + Q A VLW
Sbjct: 218 YPE------ELSATARKD----LEKLGVEVHTGSMVTGVDERGVSVGEQRIPARTVLWGA 267
Query: 370 G---SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
G SK + R D+PL+ G+ + D TL V GH IF LGD ++L G+P
Sbjct: 268 GVAASKLV---------RSLDVPLDKAGRVKVDPTLTVPGHEDIFVLGDVASLV-QDGKP 317
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
+P A A Q N+ + +PL PF + + G ++GR AV F + +
Sbjct: 318 VPGIAPAAMQMGRHVAKNIRLRLEGKPLRPFHYVDKGSFAVIGRG-YAVGLVF-NKLKMS 375
Query: 487 GPIG---HSARKLAYLIRLPTDEHRLKVGVSW 515
GP+ + +AYL+ +RL V ++W
Sbjct: 376 GPLAWLMWAGIHIAYLVGF---RNRLAVMLNW 404
>gi|392971571|ref|ZP_10336965.1| putative NADH dehydrogenase [Staphylococcus equorum subsp. equorum
Mu2]
gi|403047112|ref|ZP_10902580.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus sp. OJ82]
gi|392510458|emb|CCI60251.1| putative NADH dehydrogenase [Staphylococcus equorum subsp. equorum
Mu2]
gi|402762646|gb|EJX16740.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus sp. OJ82]
Length = 402
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 170/406 (41%), Gaps = 56/406 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D+ +V L+++++ L+E +G +
Sbjct: 3 QDRKKVLVLGAGYAGLQTITKLQKQISADE--AEVTLINKNDYHYEATWLHEASAGTI-- 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G I +YD L
Sbjct: 59 -----SYEDLLYPVESVVNKDKVNFVKAEVTKIDRNAKKVETDAG--------IFDYDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVG 251
V+SLG E + + G + AF + A ++ R K + D + + V G
Sbjct: 106 VVSLGFETETFGIKGMKDHAFQIENVLTARKLSRHIEDKFANYASSKQKDDKDLAIIVGG 165
Query: 252 CGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
G++GVE +++R+ E K V+ V+ T EAA K+L +LV
Sbjct: 166 AGFTGVEFLGELTDRIPELCNKYGVEQGKVKITCV--------EAAPKMLPMFSDELVNH 217
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
R EF+ P +AA N +++++ E Q EA+ +W
Sbjct: 218 AVSYLEDRGVEFKIGT--------PIVAA--NEKGFVVKVND-----EEQQLEANTAVWA 262
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPL 427
G V N RG+ T + L ++G+ +FA+GD SA + RPL
Sbjct: 263 AG-------VRGSNLMEESFEGVKRGRIVTKQDLTIEGYDDVFAIGDVSAFIPAGEERPL 315
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQ+A QQ + N+ + +P F + + G + LG ND
Sbjct: 316 PTTAQIAMQQGEQTAKNIINILEGQPTQEFEYVDRGTVCSLGSNDG 361
>gi|429730477|ref|ZP_19265124.1| pyridine nucleotide-disulfide oxidoreductase [Corynebacterium durum
F0235]
gi|429147633|gb|EKX90657.1| pyridine nucleotide-disulfide oxidoreductase [Corynebacterium durum
F0235]
Length = 467
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/464 (23%), Positives = 188/464 (40%), Gaps = 78/464 (16%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD + + I+G GFGGL+ A + ++ V ++D++ +F+P+LY++ +G +
Sbjct: 8 PDGGRTHVVIIGSGFGGLFAAQKF------NNTDVDVTIIDRTNHHLFQPLLYQVATGLL 61
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH---LGVNGPMACTHGGTVLLESGLIVE 191
EIAP + Q FKD+ + + V + T G ++ E
Sbjct: 62 STGEIAP--------STRQIFKDQENVHVVKGEVTDINVEQQIVTTELGAIVRR----YE 109
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKDS-----LI 245
YD+L+++ GA AEFA T++DA + R + ER D L+
Sbjct: 110 YDYLIVAAGAGQSYFGNDHFAEFAPGMKTIDDALEIRARIIGAFERAELATDKEQRERLL 169
Query: 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
+VG G +GVELA V+E + N +T + KV+
Sbjct: 170 TFVIVGAGPTGVELAGQVAEMAHRTLRDEYSNFDTN------------SAKVVLLDGAPQ 217
Query: 306 VLGYFVRCI-----RRVGEFEASVKQPESGAIPNIAAD----KNSDKYILELQPAIKGLE 356
VL F + + R++ + +VK + + +I D K++ +E P
Sbjct: 218 VLPPFGKRLGRNAQRQLEKLGVTVKL--NAIVTDITKDSVTYKSTQDDTIETIPCF---- 271
Query: 357 SQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
+W+ G + PL + + ++ G+ + L V H +F +G
Sbjct: 272 -------CKIWSAGVAASPLGKLIADQTG----VEIDRAGRVMVNPDLSVGDHNNVFVIG 320
Query: 415 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR---PLLPFRFQNLGEMMILGRN 471
D + LP AQVA Q ++A N+ A ++ R PF + + G M + R
Sbjct: 321 DMMNYNN-----LPGVAQVAIQGGEYAAENIVAEVDGRDPNAREPFEYFDKGSMATVSRY 375
Query: 472 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
A V VE G IG A L +++ L +R SW
Sbjct: 376 SAVVKIGKVE---FTGFIGWVAWLLVHMMFLVGFRNRATAAASW 416
>gi|56751412|ref|YP_172113.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|56686371|dbj|BAD79593.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
Length = 444
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 117/427 (27%), Positives = 180/427 (42%), Gaps = 72/427 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ ++GGGFGGLYTAL L ++ L+D+ +F+P+LY++ +GE+ +
Sbjct: 7 KPRVVVIGGGFGGLYTALNL------GKTSVELTLIDKRNFHLFQPLLYQVATGEISPGD 60
Query: 139 I-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I AP A + N + V + P H G IVEYD+LV+
Sbjct: 61 IPAPLRAIVGRNPNTRVILGEVTDIDPQAHWVRVG--------------DEIVEYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVG 251
+ GA FA T+EDA + R++ +E E + + + +VG
Sbjct: 107 ATGASHHYFGNDQWQPFAPGLKTVEDALEMRRRIYFALEQAEQESDPERQQAWLTFTIVG 166
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++E + + NV+TT KV+ + VL F
Sbjct: 167 AGPTGVELAGAIAELTRGEMRKEFRNVDTTKA------------KVILIEGMDRVLPPFP 214
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAA---DKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ +A V+ G A D D+ + + + + S+ LW
Sbjct: 215 PEL----SAQAQVQLEGLGVTVQTKAMVTDIQEDRVVFKTGDDLHEIPSRT-----TLWA 265
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDET--------LCVKGHPRIFALGDSSALR 420
G K P +L L R AE D L + P ++ LGD +
Sbjct: 266 AGVK------ASPLGKL----LAQRTGAELDRIGRVIVQPDLQLPTDPNVYVLGDLAHCP 315
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
D +G PLP A VA QQ + G L + +P+ PFR+Q+ G M ++GRN A +
Sbjct: 316 DQAGNPLPGVAAVAMQQGAYLGKALKRRLKSQPVDPFRYQDFGSMAVIGRNAAVAR---L 372
Query: 481 EGVTLDG 487
G+ L G
Sbjct: 373 AGIRLSG 379
>gi|410453074|ref|ZP_11307036.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus bataviensis LMG 21833]
gi|409933819|gb|EKN70739.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus bataviensis LMG 21833]
Length = 407
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 164/397 (41%), Gaps = 55/397 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GG+ T+ LE L+ + V L+++ + L++ G +
Sbjct: 3 KPKIVILGAGYGGIITSKSLEKLLKSGE--ADVTLINKHDYHYLTTQLHKTGVGTAADRQ 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L+ +F K V H V LE G V YD+L+++
Sbjct: 61 IAMSIPELINPAKTRFLKAAVS-------------SVDIHSQGVHLEGGETVTYDYLLIA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE---LERRNFGKDSLIRVAVVGCGYS 255
LG E + +PG E AF + + ++ + L ++++ L V V G G++
Sbjct: 108 LGFEVETFGIPGVKENAFKIRSFRSTKIIYHQIVKQFNLYKQDYDPSRLTFV-VAGGGFT 166
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
G+E+ +++ L + I E ++++ V+ +F +
Sbjct: 167 GIEMLGELADGLPKLCKEHDIPFE--------------KIRIIGIEAAPSVIPFFPK--- 209
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI-FEADLVLWTVGSKPL 374
E + + E I I A K ILE P LE+ + ++W+ G K
Sbjct: 210 --QSIEYTQEVLEKRNIEVITATK-----ILECTPEKVLLENNLEIPTRTLIWSCGVKG- 261
Query: 375 LPHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
N +H LP+ +G+ D L VK IF++GD S LP TAQ
Sbjct: 262 -------NTIVHKWGLPIE-KGKIPVDSYLRVKNSKNIFSIGDCSLFMKDEKNALPPTAQ 313
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
VA QQA N+ A+I L F + + G + +G
Sbjct: 314 VALQQAPVCAKNIVASIRGESLKTFEYHHKGSVASIG 350
>gi|379708389|ref|YP_005263594.1| putative NADH dehydrogenase [Nocardia cyriacigeorgica GUH-2]
gi|374845888|emb|CCF62958.1| putative NADH dehydrogenase [Nocardia cyriacigeorgica GUH-2]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 164/396 (41%), Gaps = 68/396 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+ G+ A++L + ++ LV+ S+RF + +++ +G+ ++A
Sbjct: 7 RIVIVGAGYTGMLAAVQLARRT--RGRGVRITLVNPSDRFTERLRSHQIAAGQ----QLA 60
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R DL+ G+ F + RV + P+ V +++ + YD L+ +L
Sbjct: 61 DYRIPDLIDGAGIDFVRGRVTAIDPAAR-------------RVSVDATTELPYDELIYAL 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G+ VPG AE A+ A +L+ + VAV G G +G+E
Sbjct: 108 GSRADTHRVPGVAEHAWTLDDPRRAHAFSERLATVAAHGG------TVAVCGGGLTGIEA 161
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
A ++E ++ TG PG ++ AR + R + R+G
Sbjct: 162 ATEIAE--------SHAGARVSLISTGEPG------AMMGAR----ARAHLDRALDRLG- 202
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
+ P + +P+ AI+ + ++ ADL LWT G + E
Sbjct: 203 ITRRIGTPVAKVLPD----------------AIELADGELLPADLTLWTAGVRVAGLAAE 246
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439
+ + RG D TL HP I+A+GD++A+ GR + T Q A
Sbjct: 247 S------GIATDERGLVLVDPTLRSVSHPEIYAIGDAAAIDQPWGR-IHGTCQSGLPTAA 299
Query: 440 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ + + +P+ PFRF + + LGR DA +
Sbjct: 300 YVADAIARRLRGKPVRPFRFGYFHQPVSLGRRDAVI 335
>gi|228968186|ref|ZP_04129187.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228791526|gb|EEM39127.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|423451650|ref|ZP_17428503.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5X1-1]
gi|423471248|ref|ZP_17447992.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6O-2]
gi|423557377|ref|ZP_17533680.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MC67]
gi|401144519|gb|EJQ52048.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5X1-1]
gi|401193185|gb|EJR00192.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MC67]
gi|402432728|gb|EJV64784.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6O-2]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 165/412 (40%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATASLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKIVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFAADG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|425467346|ref|ZP_18846629.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
gi|389829901|emb|CCI28422.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
Length = 458
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 187/455 (41%), Gaps = 67/455 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEI-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+I +P L + D + P G V+LE + YD L
Sbjct: 57 ADISSPLRLILRGHENTDILLDHAIDIDPVK-------------GEVILEDHPPIAYDQL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAV 249
V++ G +A T+EDA + R++ +E E + +L+ +
Sbjct: 104 VIATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVI 163
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
VG G +GVELA ++E + + + I PT EA + +L
Sbjct: 164 VGGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD------- 206
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLV 365
R + + + + ++ + ++ + + +G ++ A+ +
Sbjct: 207 -----RVLPPYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETI 261
Query: 366 LWTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
LW G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 262 LWAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFA 314
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
+PLP A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV
Sbjct: 315 HQGDKPLPGIAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFV 374
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ G I A++ L +++L V V W
Sbjct: 375 K---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|359683573|ref|ZP_09253574.1| NADH dehydrogenase [Leptospira santarosai str. 2000030832]
gi|421113002|ref|ZP_15573457.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. JET]
gi|422003522|ref|ZP_16350751.1| NADH dehydrogenase [Leptospira santarosai serovar Shermani str. LT
821]
gi|410801573|gb|EKS07736.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. JET]
gi|417257741|gb|EKT87137.1| NADH dehydrogenase [Leptospira santarosai serovar Shermani str. LT
821]
Length = 422
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/455 (21%), Positives = 185/455 (40%), Gaps = 71/455 (15%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K ++ ++G GFGGL +L + ++ ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKVVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + V ++ + YD+L
Sbjct: 58 PADIAIPIRSLVGE------RSNVTVVLGE-------ATKVDLAAKTVYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVAV 249
+LS GA ++ L+DA ++ KL E+ D +L+ +
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKLLISFEKAELSGDPEVVKALLNYVI 164
Query: 250 VGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
+G G +GVELA +++E R E I A++ T I EAA ++L+ V
Sbjct: 165 IGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLTTFDV 215
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
L GEF + K+ ES + + + ++++ LE ++
Sbjct: 216 SL------------GEF--TKKRLESRGVEVLTGAR-----VIDIDERGVQLEGKMIPTQ 256
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
V+W G + N+ L L+ G+ DE ++GHP +F +GD +
Sbjct: 257 TVIWAAGVQA--------NSIASTLGATLDRSGRVSVDEFCNIEGHPEVFVIGDIANYSK 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
RPLP + VA QQ + + + ++ PFR+ + G M +GR DA +
Sbjct: 309 GLERPLPGVSPVAMQQGRYVAALIQGDLKNKKRKPFRYVDKGSMATIGRTDAVAQMGVLR 368
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ G G A +L ++++ + ++W+
Sbjct: 369 ---MKGLFGWFAWLFVHLFYQVGFKNKITILITWV 400
>gi|42784256|ref|NP_981503.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus ATCC
10987]
gi|49481094|ref|YP_039085.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|118480149|ref|YP_897300.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis str. Al Hakam]
gi|196033004|ref|ZP_03100417.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus W]
gi|196039536|ref|ZP_03106841.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
NVH0597-99]
gi|196047574|ref|ZP_03114783.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB108]
gi|206976648|ref|ZP_03237553.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
H3081.97]
gi|217962549|ref|YP_002341121.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
AH187]
gi|218906266|ref|YP_002454100.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
AH820]
gi|222098518|ref|YP_002532576.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus Q1]
gi|225867052|ref|YP_002752430.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB102]
gi|228917702|ref|ZP_04081243.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228930097|ref|ZP_04093107.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228936349|ref|ZP_04099147.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|229094184|ref|ZP_04225263.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-42]
gi|229124607|ref|ZP_04253792.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus 95/8201]
gi|229141802|ref|ZP_04270330.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST26]
gi|229187313|ref|ZP_04314457.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BGSC 6E1]
gi|229199215|ref|ZP_04325895.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus m1293]
gi|376268984|ref|YP_005121696.1| NADH dehydrogenase [Bacillus cereus F837/76]
gi|384182924|ref|YP_005568686.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|423355545|ref|ZP_17333169.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus IS075]
gi|423375358|ref|ZP_17352695.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AND1407]
gi|423554457|ref|ZP_17530783.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus ISP3191]
gi|423571589|ref|ZP_17547830.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MSX-A12]
gi|423608578|ref|ZP_17584470.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD102]
gi|42740187|gb|AAS44111.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus ATCC
10987]
gi|49332650|gb|AAT63296.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|118419374|gb|ABK87793.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis str. Al Hakam]
gi|195994433|gb|EDX58388.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus W]
gi|196021608|gb|EDX60306.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB108]
gi|196029696|gb|EDX68298.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
NVH0597-99]
gi|206745134|gb|EDZ56536.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
H3081.97]
gi|217063138|gb|ACJ77388.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH187]
gi|218535670|gb|ACK88068.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
AH820]
gi|221242577|gb|ACM15287.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus Q1]
gi|225787806|gb|ACO28023.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
03BB102]
gi|228584278|gb|EEK42416.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus m1293]
gi|228596164|gb|EEK53840.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BGSC 6E1]
gi|228641638|gb|EEK97941.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST26]
gi|228658947|gb|EEL14602.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus 95/8201]
gi|228689176|gb|EEL42998.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-42]
gi|228823181|gb|EEM69015.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228829596|gb|EEM75223.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228841939|gb|EEM87045.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|324329008|gb|ADY24268.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|364514784|gb|AEW58183.1| NADH dehydrogenase [Bacillus cereus F837/76]
gi|401083165|gb|EJP91428.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus IS075]
gi|401092317|gb|EJQ00447.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AND1407]
gi|401181255|gb|EJQ88408.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus ISP3191]
gi|401200290|gb|EJR07179.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MSX-A12]
gi|401237782|gb|EJR44232.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD102]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|228961311|ref|ZP_04122928.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229087569|ref|ZP_04219700.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-44]
gi|423386576|ref|ZP_17363831.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG1X1-2]
gi|423527097|ref|ZP_17503542.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB1-1]
gi|423631773|ref|ZP_17607520.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD154]
gi|423650944|ref|ZP_17626514.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD169]
gi|228695747|gb|EEL48601.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-44]
gi|228798364|gb|EEM45360.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401263415|gb|EJR69541.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD154]
gi|401280877|gb|EJR86794.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD169]
gi|401631997|gb|EJS49787.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG1X1-2]
gi|402454260|gb|EJV86053.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB1-1]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|218900218|ref|YP_002448629.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
G9842]
gi|228910907|ref|ZP_04074716.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis IBL
200]
gi|229175764|ref|ZP_04303270.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MM3]
gi|402563373|ref|YP_006606097.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-771]
gi|423363346|ref|ZP_17340844.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD022]
gi|218542432|gb|ACK94826.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
G9842]
gi|228607715|gb|EEK65031.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MM3]
gi|228848858|gb|EEM93703.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis IBL
200]
gi|401075566|gb|EJP83942.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD022]
gi|401792025|gb|AFQ18064.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-771]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|81298912|ref|YP_399120.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
gi|81167793|gb|ABB56133.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
Length = 444
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 117/427 (27%), Positives = 180/427 (42%), Gaps = 72/427 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ ++GGGFGGLYTAL L ++ L+D+ +F+P+LY++ +GE+ +
Sbjct: 7 KPRVVVIGGGFGGLYTALNL------GKTSVELTLIDKRNFHLFQPLLYQVATGEISPGD 60
Query: 139 I-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I AP A + N + V + P H G IVEYD+LV+
Sbjct: 61 IAAPLRAIVGRNPNTRVILGEVTDIDPQAHWVRVGDE--------------IVEYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVG 251
+ GA FA T+EDA + R++ +E E + + + +VG
Sbjct: 107 ATGASHHYFGNDQWQPFAPGLKTVEDALEMRRRIYFALEQAEQESDPERQQAWLTFTIVG 166
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++E + + NV+TT KV+ + VL F
Sbjct: 167 AGPTGVELAGAIAELTRGEMRKEFRNVDTTKA------------KVILIEGMDRVLPPFP 214
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAA---DKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ +A V+ G A D D+ + + + + S+ LW
Sbjct: 215 PEL----SAQAQVQLEGLGVTVQTKAMVTDIQEDRVVFKTGDDLHEIPSRT-----TLWA 265
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDET--------LCVKGHPRIFALGDSSALR 420
G K P +L L R AE D L + P ++ LGD +
Sbjct: 266 AGVK------ASPLGKL----LAQRTGAELDRIGRVIVQPDLQLPTDPNVYVLGDLAHCP 315
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
D +G PLP A VA QQ + G L + +P+ PFR+Q+ G M ++GRN A +
Sbjct: 316 DQAGNPLPGVAAVAMQQGAYLGKALKRRLKSQPVDPFRYQDFGSMAVIGRNAAVAR---L 372
Query: 481 EGVTLDG 487
G+ L G
Sbjct: 373 AGIRLSG 379
>gi|335356465|ref|ZP_08548335.1| NADH dehydrogenase [Lactobacillus animalis KCTC 3501]
Length = 402
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 56/400 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL T +L+ V K +++LVD+ + L+E+ SG A +I
Sbjct: 3 KVVVLGAGYAGLQTVHKLQKNV---KGKAKIILVDKDDYHYETTELHEVASGTQSALKIT 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD++ +F +D V L + V L+ +++YD+ VL+LG
Sbjct: 60 YPIADIVDPAVTEFIQDEVVKLDATKK-------------QVQLKQHGMLDYDYCVLALG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDS-LIRVAVVGCGYSGVE 258
+ + GA E A + ++ + + D L+ +E+ KD +++ V G G++G+E
Sbjct: 107 FVSETFGIKGAKENALEMTNIKQSLAIYDHILASMEKYKETKDKRYLQLVVCGAGFTGIE 166
Query: 259 LAATVSERLEEKGIVQAI---NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
LA ++E E V + V+ T+ EAA ++L +L Y V+ +
Sbjct: 167 LAGALAEGRPEYAKVAGVAPSEVKITVV--------EAATRLLPMFSEKLA-DYGVKLVE 217
Query: 316 RVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
+G E K E A + +K+ ++ +A+ ++WT G
Sbjct: 218 SLGIELLCGAKISEV-APGEVIYEKDG--------------QTNSLKAETIIWTTGVSGS 262
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQV 433
P V N + RG+ + L ++ LGD +A+ D SGRP P TAQ+
Sbjct: 263 -PVVGESNLQ------ERRGRVVVTDNLTDPNFDDLYILGDVAAVMDKESGRPYPTTAQI 315
Query: 434 AFQQADFAGWNLWAAINDRPLL--PFRFQNLGEMMILGRN 471
A + A +A +L + IN L PF +++ G + +G
Sbjct: 316 ATEMAVYAAKDLESQINGNGHLSTPFVYKSKGTVASVGNT 355
>gi|329940333|ref|ZP_08289614.1| dehydrogenase [Streptomyces griseoaurantiacus M045]
gi|329300394|gb|EGG44291.1| dehydrogenase [Streptomyces griseoaurantiacus M045]
Length = 511
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 116/458 (25%), Positives = 197/458 (43%), Gaps = 80/458 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++A
Sbjct: 3 RPRILIVGAGFAGYQTARTLSKLA---RGKADITLLNPTDYFLYLPLLPQVSAGILEARR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKL-LCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ + L +VKL L +D + ++G H + G + YD LVL
Sbjct: 60 VTVSLSGTLP---------KVKLVLGEADGIDLDG--RTVHYTNPEGDEGTLA-YDRLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVG 251
+ G+ KL +PG AE A F L +A + D ++E +D + VVG
Sbjct: 108 AAGSVNKLLPIPGIAEHAHGFRGLPEALYLRDHITRQVELAASSEDPEECAARCTFVVVG 167
Query: 252 CGYSGVELAAT--------VSERLEEKGIVQA---INVETTICPTGTPGNREAALKVLSA 300
GY+G E+AA V E G+ +++ + P A +VL
Sbjct: 168 AGYTGTEVAAQGKMFTDHLVKEHPLRSGMRPRWLLLDLAKKVLPELDERLSRTADQVLRD 227
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V++ +G V+ EA+ + + + +
Sbjct: 228 RGVEVRMGTSVK--------EATAR-------------------------GVLLTDGESV 254
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+ ++W VG +P P E L RG+ + TL V G P +FA GD++A+
Sbjct: 255 DTRTLVWCVGVRPD-PLAESTGLALE------RGRLLVEPTLQVPGRPEVFACGDAAAVP 307
Query: 421 --DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
+ G+ P TAQ A++Q N+ A+ P+R ++LG ++ LG AA +P
Sbjct: 308 NLEDPGKYYPMTAQHAWRQGRTCAHNIAASFGQGDPRPYRHRDLGFVVDLGGVKAAANPL 367
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G+ L GP+ + + +L +P + R++V WL
Sbjct: 368 ---GIPLSGPLAGAVTRGYHLAAMPGN--RIRVAADWL 400
>gi|30265112|ref|NP_847489.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. Ames]
gi|47530622|ref|YP_021971.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. 'Ames Ancestor']
gi|49187923|ref|YP_031176.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. Sterne]
gi|65317057|ref|ZP_00390016.1| COG1252: NADH dehydrogenase, FAD-containing subunit [Bacillus
anthracis str. A2012]
gi|165869933|ref|ZP_02214590.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0488]
gi|167641772|ref|ZP_02400014.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0193]
gi|170689379|ref|ZP_02880572.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0465]
gi|170709090|ref|ZP_02899518.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0389]
gi|177655400|ref|ZP_02936898.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0174]
gi|190569227|ref|ZP_03022123.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Tsiankovskii-I]
gi|227817843|ref|YP_002817852.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. CDC 684]
gi|229602485|ref|YP_002869305.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. A0248]
gi|254686486|ref|ZP_05150345.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. CNEVA-9066]
gi|254724485|ref|ZP_05186269.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A1055]
gi|254735693|ref|ZP_05193400.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Western North America USA6153]
gi|254750985|ref|ZP_05203024.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Vollum]
gi|254756973|ref|ZP_05209001.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Australia 94]
gi|386738940|ref|YP_006212121.1| Pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. H9401]
gi|421508839|ref|ZP_15955749.1| Pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. UR-1]
gi|421639737|ref|ZP_16080327.1| Pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. BF1]
gi|30259789|gb|AAP28975.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Ames]
gi|47505770|gb|AAT34446.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. 'Ames Ancestor']
gi|49181850|gb|AAT57226.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Sterne]
gi|164714256|gb|EDR19776.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0488]
gi|167510255|gb|EDR85659.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0193]
gi|170125992|gb|EDS94891.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0389]
gi|170666675|gb|EDT17445.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0465]
gi|172080151|gb|EDT65245.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0174]
gi|190559667|gb|EDV13656.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Tsiankovskii-I]
gi|227002352|gb|ACP12095.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. CDC 684]
gi|229266893|gb|ACQ48530.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0248]
gi|384388792|gb|AFH86453.1| Pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. H9401]
gi|401821015|gb|EJT20175.1| Pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. UR-1]
gi|403393089|gb|EJY90335.1| Pyridine nucleotide-disulfide oxidoreductase [Bacillus anthracis
str. BF1]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 RPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|47567309|ref|ZP_00238022.1| NADH dehydrogenase [Bacillus cereus G9241]
gi|47555930|gb|EAL14268.1| NADH dehydrogenase [Bacillus cereus G9241]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 165/412 (40%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + +G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPNG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVTT 356
>gi|407795473|ref|ZP_11142432.1| NADH dehydrogenase [Salimicrobium sp. MJ3]
gi|407020358|gb|EKE33071.1| NADH dehydrogenase [Salimicrobium sp. MJ3]
Length = 406
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/415 (24%), Positives = 167/415 (40%), Gaps = 75/415 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+P I ILG G+GG+ TA +L+ V D + LV+ L+E +G +
Sbjct: 2 NRPNIVILGAGYGGMMTASKLQKKVSAD--SANMTLVNMHSYHYQSTWLHENAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+++ + F +D V + P + V L +G I YD+LV+
Sbjct: 60 RTRMEVDNVIDTNKINFVQDTVTGIDPDNK-------------KVSLLNGEI-SYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDA----CRVDRKLSELERRNFGKDSLIRVAVVGCG 253
LG E + G E AF S++ A ++ ++ K + + V G G
Sbjct: 106 GLGFEAATFGIKGLLENAFTISSINKARLIRQHIEYNFAKYNNEKDKKQERLNLVVGGAG 165
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSAR 301
++G+E ++ R+ E + V+ INVE PT PG E A+ L AR
Sbjct: 166 FTGIEFVGELANRVPELCKEYDVPRENVRIINVEA--APTALPGFDPELVEYAMNSLEAR 223
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+ LG ++ + +DK + E +G E +
Sbjct: 224 GVEFKLGAMIKEV-------------------------TADKLVYE-----QGDEIEEIP 253
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-AL 419
+ V+W G + N+ + + + RG+ E L G+ +F +GD + +
Sbjct: 254 TNTVVWAAGVR--------GNSLVEEAGFESNRGRTPVREDLRPNGYDDVFIVGDCALIM 305
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
+ + RP P TAQ+A Q+A+ NL + + L PF G + LG DA
Sbjct: 306 NEETERPYPPTAQIAIQEAEHTAGNLKRIVEGNHNLEPFEPNIQGTVASLGNKDA 360
>gi|423400083|ref|ZP_17377256.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG2X1-2]
gi|423479225|ref|ZP_17455940.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6X1-1]
gi|401656710|gb|EJS74225.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG2X1-2]
gi|402425529|gb|EJV57675.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6X1-1]
Length = 392
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|389574219|ref|ZP_10164285.1| NADH dehydrogenase ndh [Bacillus sp. M 2-6]
gi|388426080|gb|EIL83899.1| NADH dehydrogenase ndh [Bacillus sp. M 2-6]
Length = 406
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 182/437 (41%), Gaps = 79/437 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ L+E +G +
Sbjct: 6 KPKIVVLGAGYGGLMTVTRLTKQLGTND--ADITLVNKHNYHYETTWLHEASAGTLHHDR 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ ++ V F + V+ + + V+ G + YD+LV++
Sbjct: 64 CRYQIKDVINSSRVNFVQATVESINKEEK-------------KVVTSDGEL-SYDYLVVA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AF S + A R R+ EL+ + D+ R + V G G
Sbjct: 110 LGAVPETFGIAGLKEYAFSISNINSA-RQLREHIELQFATYNTDAEKRPERLTIVVGGAG 168
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSAR 301
++G+E + R+ E + V+ I VE PT PG + A+ L +
Sbjct: 169 FTGIEFLGELGNRVPELCKEYDIDQKDVRIICVEA--APTALPGFDPELIDYAMNYLQGK 226
Query: 302 KVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
V+ +G ++ C PE I K+ D ++
Sbjct: 227 GVEFKIGTAIKEC------------TPEG-----IIVGKDDD--------------TEEI 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-AL 419
+A+ V+W G + P VE N RG+ + L V + +F +GD S +
Sbjct: 256 KAETVVWAAGVRG-NPIVEEAGFE------NMRGRVKVSPDLRVPENEDVFIIGDCSLII 308
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
+ RP P TAQ+A QQ + NL A + L F+ G + LG +D AV +F
Sbjct: 309 NEEINRPYPPTAQIAMQQGETVAKNLAALVKGGTLESFKPDIKGTVASLGEHD-AVGVAF 367
Query: 480 VEGVTLDGPIGHSARKL 496
G L G + +K+
Sbjct: 368 --GKKLQGTKASAMKKI 382
>gi|209517892|ref|ZP_03266726.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia sp. H160]
gi|209501725|gb|EEA01747.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia sp. H160]
Length = 429
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 156/390 (40%), Gaps = 34/390 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I GGG G+ A RL + + + V L+D+S ++KPML+ + +G D +
Sbjct: 6 RIVIAGGGIAGILLATRLGDQLGRSGRAA-VTLIDKSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
G + V+ L + V T G V+++S VEYD LV+SLG
Sbjct: 65 VIHVAHAREHGFTYLPGEVRGL-DRERRRVELGEIRTQEGAVIVDS-RTVEYDVLVMSLG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ VPG + + A + L R+ KD +RVAVVG G +GVELA
Sbjct: 123 SRANDFGVPGVRSHCHFIDSQQQAENFNLVLRNHILRSAAKDEALRVAVVGAGATGVELA 182
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNR-EAALKVLSARKVQLVLGYFVRCIRRVGE 319
A +S LE G P R +L +L A R +
Sbjct: 183 AELSRLLE------------VASHYGDPSMRGRLSLTLLEAGP------------RVLPS 218
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379
F + + I + + + EADL++W G K
Sbjct: 219 FPPEISASSQQQLERIGFRVMTSTQVTSADARGFYHNDSLLEADLMVWAAGVK-----AA 273
Query: 380 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQA 438
L L N Q + TL +FA+GD ++L + R LP TAQVA QQA
Sbjct: 274 DFMGNLAGLETNRSNQLIVEATLQTTRDEHVFAVGDCASLTPEGHDRALPPTAQVATQQA 333
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
+ +L I + L F F++ G ++ L
Sbjct: 334 EHLARHLPRWIEGKALPEFVFRDYGSLVSL 363
>gi|154346482|ref|XP_001569178.1| putative NADH dehydrogenase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066520|emb|CAM44317.1| putative NADH dehydrogenase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 527
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 194/461 (42%), Gaps = 74/461 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + +LG G+ G Y A L + K + ++ VF P+L + +G ++ +
Sbjct: 12 PNVVVLGTGWAGCYAAHHL------NPKLCNIQVISTRNHMVFTPLLPQTTTGTLEFRSV 65
Query: 140 APRFADL---LANTGVQFFK--------DRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
++ LA +F + D ++ C +GV G G + +
Sbjct: 66 CEPITNIQPALAKLPHRFLRSVIYDVDFDEKQVKCVG--IGVVG------GSKNVPVNTF 117
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDS---- 243
V YD+L+++ GA+P +PG E AF + +A + ++L + + N S
Sbjct: 118 SVSYDYLIMAHGAKPNTFNIPGVEERAFFLREVTEARGIRKRLVQNIMAANLPTTSIEEA 177
Query: 244 --LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR 301
L+ VVG G +G+E AA +++ E NV T++ P + VL A
Sbjct: 178 KRLLHTVVVGGGPTGIEFAANLADFFRE----DIKNVNTSLLP-------HCKVTVLEAG 226
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
+ VLG F +RR G+ E I A +DK + ++
Sbjct: 227 E---VLGSFDATLRRYGQLRLKQLGVE---IRKTAVVNVTDKQVFTKS-------GEVLP 273
Query: 362 ADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV----KGHPRIFALGD 415
LV+W+ VGS P+ ++ + G+ D+ L V K P +FA GD
Sbjct: 274 TGLVVWSTGVGSGPITKALKCDK--------TSHGRISIDDHLRVLRDSKPIPNVFAAGD 325
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDAA 474
+A S+ +PLP A VA +Q + G + + + + PF +++LG M +G + A
Sbjct: 326 CAA---SNEKPLPTLAAVASRQGRYIGKEINNLLKGKQMTKPFVYRSLGSMASIGSHSAI 382
Query: 475 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
VS + L+G K AYL L + +L V V+W
Sbjct: 383 VSLGEKLKLDLNGYAALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|229020307|ref|ZP_04177075.1| hypothetical protein bcere0030_47980 [Bacillus cereus AH1273]
gi|229026531|ref|ZP_04182884.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH1272]
gi|423388640|ref|ZP_17365866.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG1X1-3]
gi|423417014|ref|ZP_17394103.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG3X2-1]
gi|228734778|gb|EEL85420.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH1272]
gi|228741008|gb|EEL91238.1| hypothetical protein bcere0030_47980 [Bacillus cereus AH1273]
gi|401108432|gb|EJQ16363.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG3X2-1]
gi|401642715|gb|EJS60421.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG1X1-3]
Length = 392
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFAEDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|402554819|ref|YP_006596090.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
FRI-35]
gi|401796029|gb|AFQ09888.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus cereus
FRI-35]
Length = 375
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|149183074|ref|ZP_01861526.1| NADH dehydrogenase [Bacillus sp. SG-1]
gi|148849203|gb|EDL63401.1| NADH dehydrogenase [Bacillus sp. SG-1]
Length = 410
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/406 (23%), Positives = 174/406 (42%), Gaps = 56/406 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPRI +LG G+GGL T RL+ +D+ +++L+++++ L+E +G +
Sbjct: 7 RKPRIVVLGAGYGGLMTVTRLQKQFSKDE--AEIVLINKNDYHYETTWLHEASAGTLHHD 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ D++ V F + V + + + T G VEYD+LV+
Sbjct: 65 KVRYDIKDVIDGHKVNFMQTTV------EDIKTDAKKVITANGE--------VEYDYLVI 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCG 253
+LGA + + G E AF + + A + ++ + + + KD + + V G G
Sbjct: 111 ALGAVSETFGIKGLHEHAFMIANINSARQLREHIEYQFATYKNEEEKKDERLTIVVGGAG 170
Query: 254 YSGVELAATVSERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGY 309
++G+E + R+ E + + +V+ +C EAA +L +LV
Sbjct: 171 FTGIEFLGELGNRIPE--LCKEYDVDFKKVRIVCV-------EAAPMILPGFDPELVKYA 221
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ ++ EF E+ A ++ K D E + +A ++W
Sbjct: 222 RAKLEKKGVEFRIGTPLKEATA-NSVIISKGED-------------EVEEIQAGTIVWAA 267
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLP 428
G + P +E N R + + ++ L GH +F +GD S + + + RP P
Sbjct: 268 GVRG-NPVIEKSGIE------NMRARVKVEKDLRAPGHDNVFVIGDCSLMINEETERPYP 320
Query: 429 ATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
TAQ+A QQ + N+ A + + L F G + LG +DA
Sbjct: 321 PTAQIAMQQGETCARNITALMKGNDALEQFTPDIKGTVCSLGEDDA 366
>gi|411120891|ref|ZP_11393263.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410709560|gb|EKQ67075.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 433
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 184/460 (40%), Gaps = 86/460 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
KK P++ ++G GFGG+ A L VLL+D++ F P+LY++ +++
Sbjct: 2 KKCPQVLVIGAGFGGMQAAQSLAG------SGADVLLIDRNNYNSFIPLLYQVAFAQLEP 55
Query: 137 WEIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
IA L + V+F L+ ++ + T + YD+L
Sbjct: 56 GLIAYPVRTLFRRVSNVRF------LMADVQYIDLRQKYLETERDRI--------PYDYL 101
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAV 249
VL+ G++ ++ VPGA+E A P TLEDA + + + LE + D L+ +
Sbjct: 102 VLATGSQSRISGVPGASEVALPLRTLEDAIALRNHVVLRLEMASHEPDPDRRQQLLTFVI 161
Query: 250 VGCGYSGVELAATVSERL------------EEKGIVQAINVETTICPTGTPGNREAALKV 297
VG G +GVE+A + E L EK V + + P P
Sbjct: 162 VGGGATGVEVAGALIELLRSLQRRDYPMLRREKAHVVMLQASDRLLPDLPPS-------- 213
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
+ GY + +R++G D + ++ P L++
Sbjct: 214 --------LGGYTAKKLRQIG------------------VDVRLGVKVSQVAPQAVYLQN 247
Query: 358 -QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
Q + V+WT G + +P V + RG+ T TL + P ++A+GD
Sbjct: 248 GQSISTETVIWTAGLEAAVPEVA------DTVEATPRGKLTTLPTLQLPNFPEVYAIGDV 301
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ + D+ L A A Q N+ + R PF + N G + I+G
Sbjct: 302 AQVADAD---LTGVAPEALQAGVAVARNIHLQMKGRSPKPFSYFNKGRLAIIGCYSGV-- 356
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ GVTL G + +L+ LP +RL V +SW+
Sbjct: 357 -GQIAGVTLTGFLPWFMWLAVHLVYLPGFRNRLLVFLSWI 395
>gi|21218715|ref|NP_624494.1| oxidoreductase [Streptomyces coelicolor A3(2)]
gi|5748620|emb|CAB53125.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 409
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 164/399 (41%), Gaps = 65/399 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI +LG G+ G Y A L + + D ++ +V+ FV + L++L +G+ A E
Sbjct: 2 KHRIVVLGAGYAGAYVAGTLARRLSRQDT--EITVVNAEPDFVQRLRLHQLSAGQ--AIE 57
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
AP+ ++ A TG++ RV + P + +A GG E G YD L+ +
Sbjct: 58 -APQLTEVFAGTGIRLRLARVTAVDPERQVVA---VADADGGDGHGELG----YDTLLYA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG+ VPG AE AF + A R+ ++L L RR+ G LI VG G +G+E
Sbjct: 110 LGSHVTTHGVPGVAEHAFDVAGRPSALRLRKRLDVLSRRDEGGSVLI----VGVGLTGIE 165
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
A ++E + T+ G G + +A R+ LG V V
Sbjct: 166 TATEIAESRP--------GLSVTLIARGELGAQLSAGARRHLRQACDRLGITVLEHTEVE 217
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
EA+ + AD + +D +WT G
Sbjct: 218 AVEAA---------RVLCADGTA------------------LASDATVWTAG------FA 244
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
P L + G+ D T+ HP ++A GDS+ + +GRPLP ++ A
Sbjct: 245 VSPIAAAGGLEVTETGRIVVDRTMQSVSHPNVYAAGDSAYVVGDNGRPLP----MSCASA 300
Query: 439 DFAGWNLWAAI----NDRPLLPFRFQNLGEMMILGRNDA 473
+ G AAI R + + + LG + LGR DA
Sbjct: 301 GYTGMQATAAIVGRLTGRTIPNTKLEYLGNHISLGRRDA 339
>gi|456388279|gb|EMF53769.1| transmembrane NADH dehydrogenase [Streptomyces bottropensis ATCC
25435]
Length = 468
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 117/462 (25%), Positives = 193/462 (41%), Gaps = 78/462 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++
Sbjct: 12 RPRIVIVGAGFAGYRTARTLARLT---RNKADITLLNPTDYFLYLPLLPQVAAGVLEPRR 68
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ L + + + + + + P GGT L YD LVL+
Sbjct: 69 VTVSLTGTLRHVRL-VLGEAEDIDLDARTVRYTDP----EGGTGTLT------YDRLVLA 117
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVGC 252
G+ KL +PG AE A F L +A + D ++E +D + VVG
Sbjct: 118 AGSVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELAAGSQDPESCRARCTFVVVGA 177
Query: 253 GYSGVELAAT--------VSERLEEKGIV---QAINVETTICPTGTPGNREAALKVLSAR 301
GY+G E+AA V ++ G+ +++ + P A KVL R
Sbjct: 178 GYTGTEVAAQGQMFTDALVRQQPLRDGVRPRWMLLDIAKRVLPEMDEKLSRTAGKVLRQR 237
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V + E SVK+ D +L + + +
Sbjct: 238 GVDV-------------RMETSVKE------------ATQDGVLLS--------DGEFVD 264
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
++W VG +P +P L LP+ RG+ D TL V G P +FA GD++A+ D
Sbjct: 265 TRTLVWCVGVRP-----DPLAESL-GLPME-RGRLLVDPTLQVPGRPEVFACGDAAAVPD 317
Query: 422 --SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
G+ P TAQ A++Q A N+ A++ P+R +LG ++ LG AA +P
Sbjct: 318 LTKPGQYTPMTAQHAWRQGKVAALNVAASLGRGEPKPYRHSDLGFVVDLGGVKAAANPL- 376
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
GV L G + + +L +P + R++V W + +
Sbjct: 377 --GVPLSGLAAGAVTRGYHLAAMPGN--RVRVAADWFLDAVL 414
>gi|339506083|ref|YP_004716752.1| NADH dehydrogenase protein [Sinorhizobium fredii GR64]
gi|338760190|gb|AEI89615.1| NADH dehydrogenase protein [Sinorhizobium fredii GR64]
Length = 420
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 185/445 (41%), Gaps = 60/445 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWE 138
R+ I+GGGF GL A +D K P + +VD+ +F+P+LY++ + + E
Sbjct: 4 RVVIVGGGFAGLQLA--------KDLKCPNLSITIVDRRNHHLFQPLLYQVATTVLATSE 55
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA + KD LL + +GV+ V L+ G + YD LVL+
Sbjct: 56 IAWPIRAVFRGR-----KDVTTLL--GEVVGVD-----VEKRLVSLKGGHAIPYDTLVLA 103
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGC 252
GA FA LEDA + R+L +ELE + +++ +++G
Sbjct: 104 TGARHAYFGRDEWEPFAPGLKALEDATTIRRRLLLAFEKAELETDPQARAAMLTFSIIGA 163
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVE+A ++E + + + N++TT+ EA +VL
Sbjct: 164 GPTGVEMAGIIAELAQRTLVEEFRNIDTTLARILLV---EAGPRVLPV------------ 208
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
F ++ Q ++ ++ + + + + + + + + V+W G +
Sbjct: 209 -------FHEALSQYAERSLASMGVEVRTGRPVTDCTEEGISIGDEFVPSRTVIWAAGVQ 261
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
V + G+A L + HP IF +GD+++++ G P+P A
Sbjct: 262 ASKAAVWVGAE------TDRAGRAIVQPDLTISEHPEIFVVGDTASVKTGEGMPVPGIAP 315
Query: 433 VAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
A QQ + + A + R PF++++LG + +G + A + + L G I
Sbjct: 316 AAKQQGKYVAQVIKARLKQRSAPPPFKYRHLGNLATIGPSSAVIDFGRLR---LKGSIAW 372
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWL 516
A++ L R+ V +SWL
Sbjct: 373 WIWGFAHIYFLIGTRSRMAVALSWL 397
>gi|423521069|ref|ZP_17497542.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA4-10]
gi|401180166|gb|EJQ87329.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA4-10]
Length = 392
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFAEDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|167636566|ref|ZP_02394861.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0442]
gi|254744221|ref|ZP_05201901.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. Kruger B]
gi|167528039|gb|EDR90842.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
str. A0442]
Length = 392
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 165/411 (40%), Gaps = 73/411 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 RPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK---DSLIRVAVVGCGYSGV 257
++ +PG E + + DA ++ + + + R + K ++ + + G G +GV
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVKD-RIREYAKTKNEADATIVIGGGGLTGV 167
Query: 258 ELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLVL 307
EL +++ + + +N VE I P E A L AR V +
Sbjct: 168 ELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLT 227
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G + N+A ++ ++L+ + Q A+ +W
Sbjct: 228 GL---------------------PVTNVAGNE------IDLK------DGQKLVANTFVW 254
Query: 368 TVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
T G PL+ L +N RG+A D L H +F GDS+ + GR
Sbjct: 255 TGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKNVFVAGDSAVVFAPDGR 305
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
P P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 306 PYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|163942789|ref|YP_001647673.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus weihenstephanensis KBAB4]
gi|229014256|ref|ZP_04171376.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides DSM 2048]
gi|229062738|ref|ZP_04200043.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH603]
gi|229135904|ref|ZP_04264668.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST196]
gi|229169789|ref|ZP_04297487.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH621]
gi|423369065|ref|ZP_17346496.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD142]
gi|423490238|ref|ZP_17466920.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BtB2-4]
gi|423495962|ref|ZP_17472606.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER057]
gi|423497244|ref|ZP_17473861.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER074]
gi|423513463|ref|ZP_17489993.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-1]
gi|423519754|ref|ZP_17496235.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-4]
gi|423595732|ref|ZP_17571762.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD048]
gi|423597655|ref|ZP_17573655.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD078]
gi|423660101|ref|ZP_17635270.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM022]
gi|423670620|ref|ZP_17645649.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM034]
gi|163864986|gb|ABY46045.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bacillus weihenstephanensis KBAB4]
gi|228613691|gb|EEK70818.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH621]
gi|228647566|gb|EEL03637.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST196]
gi|228716498|gb|EEL68201.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH603]
gi|228747033|gb|EEL96916.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides DSM 2048]
gi|401078421|gb|EJP86732.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD142]
gi|401149798|gb|EJQ57265.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER057]
gi|401157895|gb|EJQ65291.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-4]
gi|401162964|gb|EJQ70317.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER074]
gi|401221626|gb|EJR28240.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD048]
gi|401239187|gb|EJR45619.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD078]
gi|401294907|gb|EJS00532.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM034]
gi|401303762|gb|EJS09323.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM022]
gi|402429917|gb|EJV61999.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BtB2-4]
gi|402445707|gb|EJV77576.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-1]
Length = 392
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATASLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKIVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|58583917|ref|YP_202933.1| NADH dehydrogenase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|58428511|gb|AAW77548.1| NADH dehydrogenase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 470
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 103/415 (24%), Positives = 168/415 (40%), Gaps = 60/415 (14%)
Query: 71 TYTWPDKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
T T P + P + ++GGGF GL+ L DD ++ L+D+ +F+P+LY++
Sbjct: 40 TMTAPPSQAPLHLVVVGGGFAGLWATRAL------DDPNIRITLIDRQNHHLFQPLLYQV 93
Query: 130 LSGEVDAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
+ + A +IA +L V+ V + PS V+L G
Sbjct: 94 ATAGLSAPDIAAPLRHILREQRNVEVLLGDVTDIAPSRR-------------EVVLADGN 140
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKD 242
+ YD L+L+ GA AE A TL DA + RKL +E E +
Sbjct: 141 TLGYDMLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARA 200
Query: 243 SLIRVAVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
+ + AVVG G +GVELA T+SE R K + I+ + +A ++++ A
Sbjct: 201 AWLSFAVVGGGPTGVELAGTLSEIARHTLKNEFRHIDPQ------------QARVRLVEA 248
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R + F + + ++ + ++ + + L
Sbjct: 249 GP------------RVLPSFPEDLTDKARKQLQHLGVEVHTSAPVTHIDALGYQLGDTFV 296
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
A V+W G P R +PL+ G+ + L V GHP IF GD ++++
Sbjct: 297 PARTVVWAAGV------AASPLARTLGVPLDRAGRVLVEADLSVPGHPEIFVGGDLASVQ 350
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
GRP+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 351 -QDGRPVPGVAPAAKQMGKHIAKAIRARHRGQTAPAFRYQDYGNLATIGRMAAIV 404
>gi|443328561|ref|ZP_21057157.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
gi|442791860|gb|ELS01351.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
Length = 446
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 193/459 (42%), Gaps = 90/459 (19%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL A L K +V+L+D+ F P+LY++ + ++ ++
Sbjct: 9 RVVIVGAGFGGLQAAQSLA------HKAVEVILIDRHNYHSFIPLLYQVATAQLAPEQVV 62
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+LL ++ V F +V+ ++ P ++ + + YD+LVL+
Sbjct: 63 VPIRNLLRSSPNVSFVSAKVET--------IDFP------AKIVQLANETISYDYLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDA----------CRVDRKLSELERRNFGKDSLIRVAV 249
G+ + V A +FAFP L DA C + + RR L+ +A+
Sbjct: 109 GSRSQFFGVESAKKFAFPLKNLGDAINLRHHILSCCEQGSRELDFARRK----KLLTIAI 164
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALK---VLSARKVQLV 306
VG G +GVELA + +V+ +N +A LK L ++ V ++
Sbjct: 165 VGGGATGVELAGS---------LVELVN--------------DALLKDYPRLDSQDVTII 201
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD--- 363
L + R + EF +S+ + + + + L+ + + +Q FE D
Sbjct: 202 LVH--SGDRLLSEFPSSLGDYTASKLRRLGVK-------VMLRSKVTSVSAQGFELDDGT 252
Query: 364 -----LVLWTVGSKPLLPHVEP-PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
V+W VG +P P P + +G+ + TL + +P +FA+GD +
Sbjct: 253 WFASATVIWAVGVTGAIPKSFPFPQT-------SNQGKIKVSPTLQLAQYPEVFAIGDLA 305
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
+ +SS + L A A QQ + + I + PFR+ N G + I+G
Sbjct: 306 QV-NSSRQNLSGVAPEALQQGVYVAQAITKIIQGHSVRPFRYFNKGRLAIIG---CYCGV 361
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + L G + +L+ P +RL + +SWL
Sbjct: 362 GKIGNLQLRGFLPWLFWLAVHLVYFPNWHNRLMILMSWL 400
>gi|422500098|ref|ZP_16576354.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA2]
gi|313828931|gb|EFS66645.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA2]
Length = 460
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 155/375 (41%), Gaps = 54/375 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
R D + LE + +D V +VG G +GVE+A T++E +
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAE----------------MKS 198
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
G P A +S +V + L + + F+ +++ + D ++
Sbjct: 199 IGIP----AIFPDVSTDRVHVTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTA 252
Query: 345 ILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
I E+ + ++ + Q AD+V+W G + H N G+ TD TL
Sbjct: 253 IAEVREDSVLLKDGQTLPADMVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLL 306
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
V+G RIFA+GD + ++ P P AQ A Q + + PL F + + G
Sbjct: 307 VEGQDRIFAVGDGAI---NTEDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKG 363
Query: 464 EMMILGRNDAAVSPS 478
M +GRN A V S
Sbjct: 364 TMATIGRNSAVVQLS 378
>gi|402307142|ref|ZP_10826170.1| NADH dehydrogenase [Haemophilus sputorum HK 2154]
gi|400373367|gb|EJP26300.1| NADH dehydrogenase [Haemophilus sputorum HK 2154]
Length = 426
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 156/373 (41%), Gaps = 55/373 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +VLL+D++ ++KP+L+E+ +G +D A + AN G QF + + +
Sbjct: 28 KRAKVLLIDRNPTHLWKPLLHEVATGSLDDGTDAVSYRAHAANHGFQFQQGTLTGVNREQ 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LV+++G++ G AE E A +
Sbjct: 88 REVILAPIVDEQGEELVKERH--ISYDKLVIAIGSKSNDFGTKGVAEHCIFLDGSEQAKQ 145
Query: 227 VDRKLSELERR-NFGKDSLIRVAVVGCGYSGVELAATVSE---RLEEKGI---------V 273
+++ EL + + +D +++A+VG G +G+EL+A + L E G V
Sbjct: 146 FQQRMLELFLKFSHSQDKDVKIAIVGGGATGIELSAELYNAVAHLNEYGFGKLDRASLKV 205
Query: 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 333
+ + PT T +AL L V + L + + A+
Sbjct: 206 TLVEAGPRLIPTLTEKVSNSALSELRKAGVDVRLNTMI-----------------TEAVE 248
Query: 334 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393
K+ +K EADL++W G K P + N
Sbjct: 249 GALITKDGEK----------------IEADLMVWAAGIKA------PDFTKEFGFETNRL 286
Query: 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453
Q E +TL P +F +GD +AL G+ +P AQ A Q A G N+ A +
Sbjct: 287 NQIEVKDTLQTTIDPNVFVIGDCAALI-QDGKAIPPRAQAAHQMATQCGKNIVALSEGKE 345
Query: 454 LLPFRFQNLGEMM 466
+ PFRF++ G ++
Sbjct: 346 MKPFRFRDKGSLL 358
>gi|403385468|ref|ZP_10927525.1| NADH dehydrogenase, FAD-containing subunit [Kurthia sp. JC30]
Length = 401
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/436 (24%), Positives = 183/436 (41%), Gaps = 61/436 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I I+G G+GGL + + L+ + D + L+++++ L+E +G + A +
Sbjct: 3 KTKIVIVGAGYGGLASVVTLQRKIALDTVD--ITLINKNDYHYETTWLHEAAAGAISAND 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ LL GV+F + V + L V T GT EYD+L++
Sbjct: 61 VCYEIEPLLKQ-GVRFVQATV------ETLDVEQQQVLTSHGTY--------EYDYLIVG 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCGY 254
LG E + +PG + A S A +V + + + E+ +D+ I V G G+
Sbjct: 106 LGFEAQHYNIPGIEQHALTISNALAASKVWAHVNAQFARYEQYGRPEDATIVVG--GAGF 163
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+G+E T ++L + I +ET L+V+ +L F +
Sbjct: 164 TGIEFLGTFVDQLPKLAAAYHIPLET--------------LRVICVESATTILPDFPETL 209
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
+ + + + E + A +DK I Q + ++WT G K
Sbjct: 210 AQYAQQALTARGVEW--MTQTAIIGCTDKGITVRQQQ----QESFIPTSTIIWTAGVKGS 263
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQV 433
VE + LP +A G+ + TL V+ +P +F +GD S + D +P P TAQ+
Sbjct: 264 -SIVEASS-----LP-SAGGRVQVLPTLNVEQYPNVFVVGDCSIVIDRYEQKPYPPTAQL 316
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 493
A QQ + NL D P++PF G + LG+ D G+ L ++
Sbjct: 317 AMQQGETIALNLQRLFADEPMVPFMPNLKGSVCSLGKGD---------GIALVKGREYTG 367
Query: 494 RKLAYLIRLPTDEHRL 509
RK A L ++ D H L
Sbjct: 368 RKAAVLKKM-IDNHAL 382
>gi|30023098|ref|NP_834729.1| NADH dehydrogenase [Bacillus cereus ATCC 14579]
gi|228923798|ref|ZP_04087076.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228988319|ref|ZP_04148413.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229049756|ref|ZP_04194313.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH676]
gi|229112511|ref|ZP_04242048.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock1-15]
gi|229130323|ref|ZP_04259282.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-Cer4]
gi|229147619|ref|ZP_04275963.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST24]
gi|229158671|ref|ZP_04286729.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus ATCC 4342]
gi|296505504|ref|YP_003667204.1| NADH dehydrogenase [Bacillus thuringiensis BMB171]
gi|423583256|ref|ZP_17559367.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD014]
gi|423588922|ref|ZP_17565008.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD045]
gi|423634063|ref|ZP_17609716.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD156]
gi|423644259|ref|ZP_17619876.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD166]
gi|423658007|ref|ZP_17633306.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD200]
gi|29898658|gb|AAP11930.1| NADH dehydrogenase [Bacillus cereus ATCC 14579]
gi|228624655|gb|EEK81424.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus ATCC 4342]
gi|228635828|gb|EEK92314.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST24]
gi|228653256|gb|EEL09135.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-Cer4]
gi|228670891|gb|EEL26198.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock1-15]
gi|228722669|gb|EEL74057.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH676]
gi|228771437|gb|EEM19909.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228835927|gb|EEM81290.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296326556|gb|ADH09484.1| NADH dehydrogenase [Bacillus thuringiensis BMB171]
gi|401209316|gb|EJR16075.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD014]
gi|401225310|gb|EJR31859.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD045]
gi|401271324|gb|EJR77341.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD166]
gi|401281969|gb|EJR87874.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD156]
gi|401288259|gb|EJR94012.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD200]
Length = 392
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|423613225|ref|ZP_17589085.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD107]
gi|401242387|gb|EJR48762.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD107]
Length = 392
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|322703387|gb|EFY94997.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Metarhizium anisopliae ARSEF 23]
Length = 414
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 168/428 (39%), Gaps = 69/428 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQD--DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
RI I+G GF G+Y+AL L+ Q+ D+ + +++ +P LYE +
Sbjct: 4 RIVIIGAGFAGMYSALAARRLISQNGRDQDIETVVIAPEPTLAVRPRLYE-----ANPAT 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A DL TGV+F + K + +GV GG +V+YD L+L
Sbjct: 59 MAAPLGDLFTATGVKFIQGVAKTIDTKMRQVGV-----VNTGG-----EAAVVDYDRLIL 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGC--GYS 255
+ G++ ++ V G + +F L A +D+ L L R D R V+ C G++
Sbjct: 109 AAGSQLRVPSVDGLKQHSFNVDQLHSAIALDQHLHSLPR---APDCPARNTVIVCGGGFT 165
Query: 256 GVELAATVSERL------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G+ELAA + RL + + V + TI P P R K L V+L LG
Sbjct: 166 GIELAAELPARLRSILGQDTETRVIVVERNPTIGPGLGPSPRPEIQKALDGYGVELKLGV 225
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
V + ++G + ++ EA V+WT
Sbjct: 226 AVTSV-------------DAGGVVTSTGER--------------------IEASTVVWTG 252
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLP 428
G + P + + G+ DE L V +FA GD++ A+ D G
Sbjct: 253 GMVATGLTQQIPGKK------DGLGRLMVDENLRVAQTKHVFATGDAACAVTDEDGHTAM 306
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
+ Q A +G N A + P P+ + G + LG N A V+ + V G
Sbjct: 307 MSCQHALVLGRSSGHNAAADLLGLPTRPYSQPDYGTCLDLGPNGAVVTAGWDRQVVFTGS 366
Query: 489 IGHSARKL 496
S ++
Sbjct: 367 QAKSVKQF 374
>gi|335052545|ref|ZP_08545426.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
409-HC1]
gi|342213089|ref|ZP_08705814.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
CC003-HC2]
gi|365961880|ref|YP_004943446.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn31]
gi|365964124|ref|YP_004945689.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn17]
gi|365973068|ref|YP_004954627.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn33]
gi|419420384|ref|ZP_13960613.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes PRP-38]
gi|422394825|ref|ZP_16474866.1| NADH dehydrogenase [Propionibacterium acnes HL097PA1]
gi|422426901|ref|ZP_16503819.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA1]
gi|422432190|ref|ZP_16509060.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA2]
gi|422434785|ref|ZP_16511643.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA2]
gi|422442510|ref|ZP_16519313.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA1]
gi|422446299|ref|ZP_16523044.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA1]
gi|422450363|ref|ZP_16527080.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA2]
gi|422452943|ref|ZP_16529639.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA3]
gi|422494494|ref|ZP_16570789.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA1]
gi|422511231|ref|ZP_16587374.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA1]
gi|422538647|ref|ZP_16614521.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA1]
gi|422541435|ref|ZP_16617293.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA1]
gi|422546210|ref|ZP_16622037.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA3]
gi|422556979|ref|ZP_16632726.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA2]
gi|422562202|ref|ZP_16637880.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA1]
gi|422570813|ref|ZP_16646408.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL067PA1]
gi|422577951|ref|ZP_16653480.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA4]
gi|313764848|gb|EFS36212.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA1]
gi|313814057|gb|EFS51771.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA1]
gi|313815591|gb|EFS53305.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA1]
gi|314916388|gb|EFS80219.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA4]
gi|314921603|gb|EFS85434.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA3]
gi|314930748|gb|EFS94579.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL067PA1]
gi|314955132|gb|EFS99537.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA1]
gi|314959328|gb|EFT03430.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA1]
gi|314969219|gb|EFT13317.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA1]
gi|315099599|gb|EFT71575.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA2]
gi|315102169|gb|EFT74145.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA1]
gi|315109959|gb|EFT81935.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA2]
gi|327334723|gb|EGE76434.1| NADH dehydrogenase [Propionibacterium acnes HL097PA1]
gi|327454421|gb|EGF01076.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA3]
gi|327456487|gb|EGF03142.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA2]
gi|328756180|gb|EGF69796.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA1]
gi|328758561|gb|EGF72177.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA2]
gi|333763380|gb|EGL40834.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
409-HC1]
gi|340768633|gb|EGR91158.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
CC003-HC2]
gi|365738561|gb|AEW82763.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn31]
gi|365740805|gb|AEW80499.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn17]
gi|365743067|gb|AEW78264.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn33]
gi|379978758|gb|EIA12082.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes PRP-38]
Length = 460
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 155/375 (41%), Gaps = 54/375 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
R D + LE + +D V +VG G +GVE+A T++E +
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAE----------------MKS 198
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
G P A +S +V + L + + F+ +++ + D ++
Sbjct: 199 IGIP----AIFPDVSTDRVHVTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTA 252
Query: 345 ILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
I E+ + ++ + Q AD+V+W G + H N G+ TD TL
Sbjct: 253 IAEVREDSVLLKDGQTLPADMVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLL 306
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
V+G RIFA+GD + ++ P P AQ A Q + + PL F + + G
Sbjct: 307 VEGQDRIFAVGDGAI---NTEDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKG 363
Query: 464 EMMILGRNDAAVSPS 478
M +GRN A V S
Sbjct: 364 TMATIGRNSAVVQLS 378
>gi|171315604|ref|ZP_02904839.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
gi|171099275|gb|EDT44034.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
Length = 452
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 176/417 (42%), Gaps = 59/417 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L + L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTTTIAAVQDADGTEILPQREL--GYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + I + V
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPERPAAPICINV 191
Query: 250 VGCGYSGVELAATVSERLEE------KGIVQAINVETTICPTGTPGNREAALKVLSAR-K 302
+G G +GVELAA + +++ K +V A +V + G P A + LSAR
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLI-EGGPRILPALDERLSARMH 250
Query: 303 VQL-VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
QL L VR RV E A +G +
Sbjct: 251 AQLRALNVDVRTDTRVAEVGADAVTASTG---------------------------ERLA 283
Query: 362 ADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
+D+ +W G V P L D+ LN Q +TL P ++A GD +A
Sbjct: 284 SDITIWAAG-------VAGPAILRELGDIALNRSNQVIVTDTLQTPDDPHVYAFGDCAAC 336
Query: 420 --RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
D+SG LP AQVA QQA + G L + +P+ F F++ G ++ LGR AA
Sbjct: 337 PSADASGF-LPPRAQVAHQQAVYLGEALARRLVGKPVAGFTFRDAGTVVSLGRAGAA 392
>gi|340357767|ref|ZP_08680375.1| pyridine nucleotide-disulfide oxidoreductase [Sporosarcina
newyorkensis 2681]
gi|339616646|gb|EGQ21289.1| pyridine nucleotide-disulfide oxidoreductase [Sporosarcina
newyorkensis 2681]
Length = 405
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 189/452 (41%), Gaps = 70/452 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P I +LG G+GGL T + L+ + D+ ++L+++++ L+E +G +
Sbjct: 2 KRPTILVLGAGYGGLMTVVNLQKSLGADE--ADIVLINKNDYHYESTWLHEAAAGTMAPE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ A ++ + VQF K V + V T+ G+ YD+LV+
Sbjct: 60 QVRYDIASVINSNKVQFVKAEVT------GIDVKNKNVTTNIGSHT--------YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS------ELERRNFGKDSLIRVAVVG 251
+LG E + +PG ++A + ++ A ++ + LE DS + + V G
Sbjct: 106 ALGFEGETFGIPGLDKYALSIANVKAARQIRDHMEYQFATWSLEEEK--DDSRLTIVVGG 163
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETT--ICPTGTPGNREAALKVLSARKVQLVLGY 309
G++G+E + R+ E + E +C EAA VL +LV Y
Sbjct: 164 AGFTGIEYLGELGNRVPELCKEYDVPAEKVRILCV-------EAAPMVLPGFDPELV-EY 215
Query: 310 FVRCIRRVGEFEASVKQPESGAIPN-IAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
VR + G E S+ P A P + K D++ + +A V+W
Sbjct: 216 AVRQLESKG-IEFSIGTPVVEATPEGVKIKKGEDEF-------------EFIKAGTVVWA 261
Query: 369 VGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGR 425
G + NR+ + N R + + D+ L G +F +GD S + ++ R
Sbjct: 262 AGVR---------GNRMIEESGIENMRARVKVDKDLRAPGFEDVFVIGDCSLMINEAINR 312
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
P P TAQ+A QQ + N+ A I + F G + LG +DA GV
Sbjct: 313 PYPPTAQIAMQQGEMCANNIIALIKGKQTTEFVPDLKGSVCSLGDSDAI-------GVVF 365
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
D I + K +++ ++ + VG LT
Sbjct: 366 DKKI--TGTKASFMKKMIDNRALFMVGGVGLT 395
>gi|384044487|ref|YP_005492504.1| s-adenosyl-methyltransferase MraW [Bacillus megaterium WSH-002]
gi|345442178|gb|AEN87195.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium WSH-002]
Length = 424
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 179/419 (42%), Gaps = 83/419 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP+I ILG G+GG+ T + L+ + D +++LV++++ L+E+ +G +
Sbjct: 7 KKPKIVILGAGYGGIMTIVNLQKKLGASD--AEIVLVNKNDYHYETTWLHEVSAGTIHQD 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L+ V F KD V + + VLLE+ + YD+LV+
Sbjct: 65 RSRIPVKNLINTNKVTFIKDTVVDIKLDEK-------------RVLLENSELT-YDYLVV 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFGKDSLIRVAV 249
+LG E + + G E AF +++ A ++ + +E+E+R D L+ + V
Sbjct: 111 ALGYEAETFGIKGLKEHAFTITSINAARQIREHIDYVFATYNNEVEKR----DELLTIIV 166
Query: 250 VGCGYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKV 297
G G++G+E ++ R+ + + V+ I VE PT PG E A+
Sbjct: 167 GGAGFTGIEFVGELANRVPQLCKEFDIPREKVRVICVEA--APTALPGFDPELVEYAVTQ 224
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L + ++ +G ++ + E G I + D + E++ A
Sbjct: 225 LERKGIEFKIGTAIK------------ECTEEGIIV------SKDDQVEEIKSAT----- 261
Query: 358 QIFEADLVLWTVGSKPLLPHV-EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
V+W G + HV E N RG+ + +L GH +F +GD
Sbjct: 262 -------VVWAAGVRG--SHVIEKAGFE------NMRGRVKVSNSLLAPGHEDVFVIGDC 306
Query: 417 SALRD-SSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
S + + + RP P TAQ+A QQ N+ + + L F+ G + LG +DA
Sbjct: 307 SLMINPETERPYPPTAQIAMQQGGTCAENISRLMKGQKELSEFKPDIKGTVCSLGHDDA 365
>gi|422550630|ref|ZP_16626427.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA1]
gi|314917226|gb|EFS81057.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA1]
Length = 460
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 155/375 (41%), Gaps = 54/375 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
R D + LE + +D V +VG G +GVE+A T++E +
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAE----------------MKS 198
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
G P A +S +V + L + + F+ +++ + D ++
Sbjct: 199 IGIP----AIFPDVSTDRVHVTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTA 252
Query: 345 ILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
I E+ + ++ + Q AD+V+W G + H N G+ TD TL
Sbjct: 253 IAEVREDSVLLKDGQTLPADMVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLL 306
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
V+G RIFA+GD + ++ P P AQ A Q + + PL F + + G
Sbjct: 307 VEGQDRIFAVGDGAI---NTEDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKG 363
Query: 464 EMMILGRNDAAVSPS 478
M +GRN A V S
Sbjct: 364 TMATIGRNSAVVQLS 378
>gi|229032710|ref|ZP_04188671.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH1271]
gi|229164038|ref|ZP_04291975.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus R309803]
gi|423394708|ref|ZP_17371909.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG2X1-1]
gi|423405570|ref|ZP_17382719.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG2X1-3]
gi|423462120|ref|ZP_17438916.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5X2-1]
gi|228619421|gb|EEK76310.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus R309803]
gi|228728605|gb|EEL79620.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH1271]
gi|401133975|gb|EJQ41598.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5X2-1]
gi|401656845|gb|EJS74359.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG2X1-1]
gi|401661186|gb|EJS78656.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG2X1-3]
Length = 392
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|402301058|ref|ZP_10820471.1| NADH dehydrogenase NDH-2A [Bacillus alcalophilus ATCC 27647]
gi|401723821|gb|EJS97248.1| NADH dehydrogenase NDH-2A [Bacillus alcalophilus ATCC 27647]
Length = 400
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 169/416 (40%), Gaps = 80/416 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I ILG G+GG+ TA RL L+ ++ + LV++ + L+E +G + A
Sbjct: 2 KKPSIVILGAGYGGMITATRLTKLLTANE--ANITLVNKHDYHYQTTWLHEPAAGTLSAE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L V+ +D V + D V+L++G V+YD+LV+
Sbjct: 60 RTRMPIKSVLNMNRVKLLQDEVVEIKKEDK-------------KVILKNGE-VDYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR-------KLSELERRNFGKDSLIRVAVV 250
LG+E + +PG E AF T+ A V K + +E +N D ++ V
Sbjct: 106 GLGSEAETFGIPGVFEHAFSKWTVNGAREVKEHIEYIFAKYNNMEEKN---DDMLSFIVA 162
Query: 251 GCGYSGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
G G++G+E +SER+ EK + I + P P E A+ +L
Sbjct: 163 GAGFTGIEFIGELSERMPELCSNYDIPREKVKMYVIEASPSALPGFDPELVEYAMNLLEN 222
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V+ + ++ ++ G A+ + ++G I
Sbjct: 223 RGVEFKINCPIKEVQADGVILANGDEVKAGTI---------------------------- 254
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-A 418
+W G + N + +A RG+ + + L G +F +GD +
Sbjct: 255 -----VWATGVR--------GNAVIEKSGFDAMRGRIKVEPELRAPGFEDVFVIGDCALI 301
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
+ + RP P TAQ+A Q AD N+ + I + L F+ G + LG +A
Sbjct: 302 INEEINRPYPPTAQIAMQMADVCAENIKSLITKQGSLKTFKPDIKGTVASLGGKEA 357
>gi|86158575|ref|YP_465360.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85775086|gb|ABC81923.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 453
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 160/417 (38%), Gaps = 78/417 (18%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++ P + I+GGGF GLY A L + ++ LVD+ +F+P+LY++ + +
Sbjct: 8 EQHTPHVVIVGGGFAGLYAARELAG------ARVRITLVDRRNHHLFQPLLYQVATAALS 61
Query: 136 AWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L+ V+ + P + L G ++YD+
Sbjct: 62 PADIAEPIRHVLSRQRNVRTLLAEAAAIEPEQR-------------RLRLADGYALDYDY 108
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVAVV--- 250
LV++ GA A FA TLEDA + R+ L+ ER D R A++
Sbjct: 109 LVVAAGATHSYFGHDEWARFAPGLKTLEDALEIRRRVLTAFERAEADPDRQRREALLTFV 168
Query: 251 --GCGYSGVELAATVSERLE------------EKGIVQAINVETTICPTGTPGNREAALK 296
G G +GVELA ++E E+ V I + P P AA +
Sbjct: 169 VVGGGPTGVELAGALAEIARFTIPRDFRTVSTERARVILIEGSERVLPALPPSLSAAAQR 228
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L VQ+ G K + + P +
Sbjct: 229 DLERLGVQVWTG----------------------------------KRVTGIDPRGVQVG 254
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
+ A VLW G P R +PL+ G+ + L V GH I+ +GD
Sbjct: 255 EERVAARTVLWAAGV------AGAPLARTLGVPLDPAGRVPVNADLTVPGHEEIYVVGDL 308
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ RD G +P A A QQ AG NL A + RP PF + + G M +GR A
Sbjct: 309 ALARDKHGAAIPGVAPAAIQQGRHAGRNLLATLRGRPRKPFAYFDKGVMATVGRGHA 365
>gi|403668380|ref|ZP_10933655.1| NADH dehydrogenase-like protein [Kurthia sp. JC8E]
Length = 396
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 102/413 (24%), Positives = 167/413 (40%), Gaps = 72/413 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GG+ +AL + V + + +V +V+Q L+ L G + +A
Sbjct: 3 KIVILGAGYGGVLSALTVRQYV--NANEAEVTVVNQFPTHQIITELHRLAGGTISEKAVA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L V +V D VN V L++G + YD LV+ LG
Sbjct: 61 FDLGKLFRGKNVNLKIAKV------DSFDVNAK-------AVKLDNGETLSYDALVVGLG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERR-NFGKDSLIRVAVVGCGYSGVE 258
++ +PG E +F ++EDA + + +S++E G + + + G G +GVE
Sbjct: 108 SKTGYFGIPGLEENSFVLKSVEDANNLRNHIISKIESYAKTGDKADATIVIGGGGLTGVE 167
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNR----------EAALKVLSARKVQLVLG 308
L + + + + + E G R E A K L+ R V+ + G
Sbjct: 168 LVGEIIDNMPKIAAKYGVKAEELDVKLVEAGPRILPVLPQTLIERATKSLADRGVEFLTG 227
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
P +G N+ + K+ K A+ ++WT
Sbjct: 228 L-----------------PVTGVEGNVVSLKDGQK----------------ITANTIVWT 254
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-----RDSS 423
G P VE L N RG+A ++ L HP +F +GD++A +
Sbjct: 255 -GGVAQYPIVEQAG-----LVCN-RGKAVVNDFLQSDSHPDVFVVGDAAAAYAPGANKET 307
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ A+Q + G+NL+A +N + + F N G + LGR D +
Sbjct: 308 DRPYPPTAQNAWQMGELVGYNLFAYLNGKDMKAFAPVNSGTLASLGRKDGVAT 360
>gi|381199685|ref|ZP_09906831.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphingobium yanoikuyae XLDN2-5]
Length = 441
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 179/425 (42%), Gaps = 81/425 (19%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PDKK +I I+GGG GL A +L + + K+ ++L+D++ ++KP+L+E+ +G +
Sbjct: 5 PDKKT-QIVIVGGGAAGLELARKLGARYGR--KRHDIILIDRNRTHIWKPLLHEVATGSL 61
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
DA + G ++ ++ + + P+ G V+ S V YD+
Sbjct: 62 DASLDEVGYRSHCHRWGYRYLYGTLQGIDRTARRVHIAPVFDPKGREVV--SAHSVRYDY 119
Query: 195 LVLSLGAEPKLDVVPGAAEF-----------AFPFSTLEDACRVDRKLSELERRNFGKDS 243
LVL+ G+ PG A+ +F L+ RV R +S + D+
Sbjct: 120 LVLAYGSVTNDFGTPGVADNCLFLDSRAQADSFRDQLLDHCLRVSRAMSA----DPASDA 175
Query: 244 LIRVAVVGCGYSGVELAATVSERLEEKG-----IVQAINVETTICPTGTPGNREAALKVL 298
+R+A+VG G +GVELAA + + G + ++ T+ EA ++L
Sbjct: 176 RVRIAIVGGGATGVELAAELYNAADALGYYGLEVFDRQRLDVTLL--------EAGPRIL 227
Query: 299 ---------SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
+AR+ VLG VR + PE
Sbjct: 228 PALPDRLADAAREELEVLGVKVRA-----GVAVTASTPE--------------------- 261
Query: 350 PAIKGLESQ---IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 406
G+E++ ADL +W G K + L L L+ GQ TL
Sbjct: 262 ----GMETKDGGFVPADLQVWAAGVK-----AAAIRDGLDGLELSRAGQVIVRPTLQSLA 312
Query: 407 HPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 465
R+FA+GD +S + + RP+P AQ A Q AD NL + DRPL F +++ G +
Sbjct: 313 DDRVFAMGDCASYMPQGADRPIPPRAQAAHQMADTVFANLGRLMADRPLKSFVYKDHGSL 372
Query: 466 MILGR 470
+ L R
Sbjct: 373 VSLSR 377
>gi|228993648|ref|ZP_04153555.1| S-adenosyl-methyltransferase MraW [Bacillus pseudomycoides DSM
12442]
gi|228999686|ref|ZP_04159262.1| S-adenosyl-methyltransferase MraW [Bacillus mycoides Rock3-17]
gi|229007244|ref|ZP_04164845.1| S-adenosyl-methyltransferase MraW [Bacillus mycoides Rock1-4]
gi|228753998|gb|EEM03435.1| S-adenosyl-methyltransferase MraW [Bacillus mycoides Rock1-4]
gi|228760048|gb|EEM09018.1| S-adenosyl-methyltransferase MraW [Bacillus mycoides Rock3-17]
gi|228766077|gb|EEM14724.1| S-adenosyl-methyltransferase MraW [Bacillus pseudomycoides DSM
12442]
Length = 394
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 171/405 (42%), Gaps = 71/405 (17%)
Query: 85 LGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFA 144
+G G+GG+ T +RL+ + + ++ LV+ + L+E +G + +I
Sbjct: 1 MGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLHHDKIRLDIQ 58
Query: 145 DLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204
D++ V F +D V + ++ V+L++ + EYD+LV+ LG E +
Sbjct: 59 DVIDTNKVNFVQDTVVEIKAAEK-------------RVILKNAEL-EYDYLVIGLGFESE 104
Query: 205 LDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGYSGVELAA 261
+ G E AF + + +A R R E + + +D L+ + V G G++G+E
Sbjct: 105 TFGIKGLKEHAFSITNI-NATRQIRDHMEYKFSQYATEKRDELVTIVVGGAGFTGIEYVG 163
Query: 262 TVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
++ R+ EK + + + P P E A+K L + V+ +G +
Sbjct: 164 ELANRIPELCKEYDVPREKARIICVEAAPSALPGFDPELVEYAVKQLEKKGVEFRIGTAI 223
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
+ EA+ E G + G + ++ +++ V+W G
Sbjct: 224 K--------EAT----EEGIL------------------VANGDDVELLKSETVVWAAGV 253
Query: 372 KPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA 429
+ N + + A RG+ + DE + GH +F +GD++ + + RP P
Sbjct: 254 RG--------NGIVEESGFEAMRGRIKVDEYMHAPGHEDVFMVGDAALIINEEINRPYPP 305
Query: 430 TAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
TAQ+A QQ NL I + + F F N G + LG +DA
Sbjct: 306 TAQIAIQQGYNIAHNLSVLIRGKGEMKKFVFDNKGSVCSLGHDDA 350
>gi|359775049|ref|ZP_09278393.1| putative NADH dehydrogenase [Arthrobacter globiformis NBRC 12137]
gi|359307647|dbj|GAB12222.1| putative NADH dehydrogenase [Arthrobacter globiformis NBRC 12137]
Length = 479
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 116/463 (25%), Positives = 194/463 (41%), Gaps = 76/463 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGG+ GLY AL+L+ + + V +VD ++P L E+ G ++A
Sbjct: 1 MLVVGGGYVGLYVALKLQKKI--ANAGGIVTVVDPLPYMTYQPFLPEVAGGNIEARHAVV 58
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L T + + RV DH +A GG V Y +VLS GA
Sbjct: 59 SHRQHLKQT--ELIQGRV---VSIDHANRTAVVAPADGG-----DNFEVPYFDVVLSAGA 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG--------KDSLIRVAVVGCG 253
+ + G A+ T+E+A + K+ L+R G + + VVG G
Sbjct: 109 ITRTFPIKGLADKGIGLKTIEEAVALRNKV--LDRIEVGSTMTDPAERARALTFVVVGGG 166
Query: 254 YSGVEL---------AATVSERLEEKGIVQAINVETT--ICPTGTPGNREAALKVLSARK 302
++G+E AA + ++ V+ + VE I P T E ++ L +R
Sbjct: 167 FAGIECITEMEDLARAAVKNNPRVKQEEVRFVLVEAMGRIMPEVTAKQAEWVVEHLRSRG 226
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
++++L + E S+K + N+ DK +Q FE
Sbjct: 227 IEVLLNT------SLDNAEGSLK------LINLP-DKTP---------------AQEFET 258
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI----FALGDSSA 418
D ++WT G + P R D PL RG+ L + G I +A GD +A
Sbjct: 259 DTLVWTAGVQ------ANPMVRSTDFPLEPRGRVRVLPDLRISGDEGIIDNAWAAGDIAA 312
Query: 419 LRDSSGRPLP-----ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ D +G LP AQ A +QA NLWA+ D+PL+ ++ +NLG + G
Sbjct: 313 VPDLTGGGLPDGTCVPNAQHALRQAKRLAKNLWASRWDKPLVDYKHKNLGAVAGFGEWKG 372
Query: 474 AVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + + + L GP+ A + + + +PT E + +V +W+
Sbjct: 373 VANINLLGRIGLKGPLAWLAHRGYHGMAMPTFERKFRVIFNWV 415
>gi|414343753|ref|YP_006985274.1| NADH dehydrogenase [Gluconobacter oxydans H24]
gi|411029088|gb|AFW02343.1| NADH dehydrogenase [Gluconobacter oxydans H24]
gi|453329249|dbj|GAC88598.1| NADH dehydrogenase type II [Gluconobacter thailandicus NBRC 3255]
Length = 430
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 170/398 (42%), Gaps = 31/398 (7%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K + I I+GGG GL A L + + +K ++ L+D+S V+KPML+ +G V
Sbjct: 2 KPQSEILIVGGGVAGLSLAANLGKTLGKR-RKARITLIDKSFSHVWKPMLHCFAAGTVAN 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
F + +F+ V + + V P + G+++LES I YD ++
Sbjct: 61 ENDRISFITQASEHHFEFWPGEVVSIDRENRQVVLSPFHAS-DGSLVLESRTI-RYDTII 118
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L++G+ PG E L +A + K R F S + +A+VG G +G
Sbjct: 119 LAIGSCANDFGTPGVKEHCLCIDNLVEANVFNEKFRMELMRAFAHGSELDIAIVGGGATG 178
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
+LAA + + L+ IV ++ G L+V + +L F +
Sbjct: 179 TQLAAELHKALD---IVDPYSLHAF-------GKTPPKLRVTLLQSGPRILPAFPESVSL 228
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
+ E +AA +S +IL+ + A L +W G K P
Sbjct: 229 AAQQELERIGVTVRTSARVAA-ADSAGFILK--------DGTHIPAKLRVWAAGVKA--P 277
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436
V +L LN GQ T LC RIFA+GD S +++ PLPATAQVA Q
Sbjct: 278 EV---TQTYGNLSLNPTGQILTHSNLCSIDDDRIFAVGDCSFIKND---PLPATAQVARQ 331
Query: 437 QADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDA 473
QA +L A I +P F+N G ++ LG+ +
Sbjct: 332 QALHLARHLPAFIERGVKVPGCVFKNKGAIVALGKYNG 369
>gi|240950315|ref|ZP_04754589.1| NADH dehydrogenase [Actinobacillus minor NM305]
gi|240295179|gb|EER45990.1| NADH dehydrogenase [Actinobacillus minor NM305]
Length = 425
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 156/373 (41%), Gaps = 55/373 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
KK V+L+D++ ++KP+L+E+ +G +D A + + F + + L +
Sbjct: 27 KKANVILIDRNSTHLWKPLLHEVATGSLDDGTDAVSYRAHATHHNFSFRQGTMSGLDREN 86
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LVL++G++ G E F E A
Sbjct: 87 KQVIIAPIYNEEGELLVAERR--IAYDKLVLAIGSQSNDFGTKGVKENCFFLDGSEQAKM 144
Query: 227 VDRK-LSELERRNFGKDSLIRVAVVGCGYSGVELAA---TVSERLEEKGI--VQAINVET 280
++ L + + +F D +++A+VG G +G+EL+A + L + G ++ N+
Sbjct: 145 FQKRFLESVLKFSFNDDHDVKIAIVGGGATGIELSADLYNAAAHLNDYGFGKLKRTNINV 204
Query: 281 TICPTG-------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 333
T+ G T AAL L+ V + L V + E G I
Sbjct: 205 TLIEAGPRLIPALTEKVSAAALSELTKTGVDVRLNTMV------------TEALEDGLIT 252
Query: 334 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393
K+ +K EADL++W G K P + N
Sbjct: 253 -----KDGEK----------------IEADLMVWAAGVKA------PEFTKEFGFETNRL 285
Query: 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453
Q E +TL ++ +GD +AL G+P+P AQ A Q A G N+ AA+ +P
Sbjct: 286 NQIEIKDTLQTTVDDSVYVIGDCAALI-QDGKPIPPRAQAAHQMAKVCGKNIVAALEGKP 344
Query: 454 LLPFRFQNLGEMM 466
L F+F + G ++
Sbjct: 345 LQAFKFNDKGSLL 357
>gi|404329550|ref|ZP_10969998.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 405
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 107/450 (23%), Positives = 186/450 (41%), Gaps = 77/450 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GG+ T +RL + ++ + LV++ L+E +G +
Sbjct: 3 KPQIVILGAGYGGMITTVRLTKDLSAEE--ADITLVNKHNYHYQTTWLHEAAAGTIHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+++ N + F +D V+ + + V+L++G + +YD+LVL+
Sbjct: 61 TRMLIKNVINNKRINFVQDSVRSVDRENK-------------KVILKNGEL-DYDYLVLA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCGY 254
LG E + G E+AF ++ A R+ + K + K+S + + V G G
Sbjct: 107 LGFESNTFGIKGLEEYAFAIRSVNTARRIREHIEYKFASYNNDPDAKESDLTIVVGGAGL 166
Query: 255 SGVELAATVSERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 304
SG+E + +R+ E V+ I+VE + P E A K L + V
Sbjct: 167 SGIEFIGELVDRVPELCKEYDIDPAKVKIIDVEGLPIVLPPFERDLAEYAQKYLEDKGVV 226
Query: 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
LG F++ EA+ P+ + A+ E + +A
Sbjct: 227 FRLGTFIK--------EAT---PDGVLVQKKDAE-----------------EMEEIKAGT 258
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
V+WT G K N+ + D RG+ + ++ L +FA+GD +
Sbjct: 259 VVWTGGVKA--------NHIVADSGFATNRGKIQVNKDLRAPDDDHVFAVGDVAVFFPKE 310
Query: 424 G-RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
G RP P TAQ+A Q+ + A NL I PF ++ G + LG + G
Sbjct: 311 GERPYPPTAQIAVQEGETAAKNLTHLIKGEDTEPFVYKQRGTVASLGDKEGI-------G 363
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVG 512
V D + + A + ++ D + L++G
Sbjct: 364 VVFDKKL--KGKPAATMKKIIDDRYLLELG 391
>gi|253574172|ref|ZP_04851514.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846649|gb|EES74655.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 392
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 165/411 (40%), Gaps = 73/411 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+GG+ +AL + D + ++ +V+Q L+ L +G + ++
Sbjct: 4 HILILGAGYGGVLSALSARK--FMDKSQARITVVNQYPTHQIITELHRLAAGSISERAVS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L + +V+ V L G ++ YD LV+ LG
Sbjct: 62 LPLDKLFKGKDIDLRIAKVESFSVDKK-------------EVKLSDGTVLSYDALVVGLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF---GKDSLIRVAVVGCGYSGV 257
+ +PG + + + +DA R+ + E R + G ++ + + G G +GV
Sbjct: 109 SITAYFGIPGLEKHSMVLKSADDAKRIYAHI-ESRIREYAASGNEADATIVIGGGGLTGV 167
Query: 258 ELAATVSERLEE----KGIVQA------INVETTICPTGTPGNREAALKVLSARKVQLVL 307
EL ++++L E G+ Q+ + I P E A L R V+ +
Sbjct: 168 ELVGEIADKLPELTKKYGVPQSEIKLMLVEAGPKILPVLPDELIERATASLEKRGVKFLT 227
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G +P + N+ ++L+ + Q A+ +W
Sbjct: 228 G-----------------------LPVTNVEGNT----IDLK------DGQKIVANTFVW 254
Query: 368 TVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
T G PL+ L +N RG+A +E L HP +F GDS+ GR
Sbjct: 255 TGGVQGNPLVGE--------SGLEVN-RGRASVNEFLQSVSHPDVFVAGDSAVFMGPDGR 305
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
P P TAQ+A+Q + G+NL+A +N + + F N G + LGR DA +
Sbjct: 306 PYPPTAQIAWQMGELIGYNLFAYLNGKTMNAFSPINSGTLASLGRKDAVAT 356
>gi|289774182|ref|ZP_06533560.1| oxidoreductase [Streptomyces lividans TK24]
gi|289704381|gb|EFD71810.1| oxidoreductase [Streptomyces lividans TK24]
Length = 409
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 167/399 (41%), Gaps = 65/399 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI +LG G+ G Y A L + + D ++ +V+ FV + L++L +G+ A E
Sbjct: 2 KHRIVVLGAGYAGAYVAGTLARRLSRQDT--EITVVNAEPDFVQRLRLHQLSAGQ--AIE 57
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
AP+ ++ A TG++ RV + P + +A GG E G YD L+ +
Sbjct: 58 -APQLTEVFAGTGIRLRLARVTAVDPERQVVA---VADADGGEGHGELG----YDTLLYA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
LG+ VPG AE AF + A R+ ++L L RR+ G LI VG G +G+E
Sbjct: 110 LGSHVTTHGVPGVAEHAFDVAGRPSALRLRKRLDVLSRRDEGGSVLI----VGVGLTGIE 165
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
A ++E + T+ G G + +A AR+ + + R+G
Sbjct: 166 TATEIAESRP--------GLSVTLIARGELGAQLSA----GARR------HLRQACDRLG 207
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
+ E + + A + + + +D +WT G
Sbjct: 208 -----ISVLEHTEVEAVEAAR------------VLCTDGTALTSDATVWTAG------FA 244
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
P L + G+ D T+ HP ++A GDS+ + +GRPLP ++ A
Sbjct: 245 VSPIAAAGGLEVTETGRIVVDRTMQSVSHPNVYAAGDSAYVVGDNGRPLP----MSCASA 300
Query: 439 DFAGWNLWAAI----NDRPLLPFRFQNLGEMMILGRNDA 473
+ G AAI R + + + LG + LGR DA
Sbjct: 301 GYTGMQATAAIVGRLTGRTIPNTKLEYLGNHISLGRRDA 339
>gi|410448284|ref|ZP_11302367.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira sp.
Fiocruz LV3954]
gi|410017878|gb|EKO79927.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira sp.
Fiocruz LV3954]
gi|456875729|gb|EMF90924.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. ST188]
Length = 422
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 97/452 (21%), Positives = 183/452 (40%), Gaps = 71/452 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K ++ ++G GFGGL +L + ++ ++D+ +F+P+LY++ + + +
Sbjct: 6 KRKVVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLSPAD 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA L+ + V ++ + YD+L+LS
Sbjct: 61 IAIPIRSLVGE------RSNVTVVLGE-------ATKVDLAAKTVYYQNTSTNYDYLILS 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVAVVGC 252
GA ++ L+DA ++ KL E+ D +L+ ++G
Sbjct: 108 AGARSSYFGNDHWEKYTIGLKNLKDALKIRHKLLISFEKAELSGDPEVVKALLNYVIIGG 167
Query: 253 GYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
G +GVELA +++E R E I A++ T I EAA ++L+ V L
Sbjct: 168 GPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLTTFDVSL- 217
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
GEF + K+ ES + + + ++++ LE ++ V+
Sbjct: 218 -----------GEF--TKKRLESRGVEVLTGAR-----VIDIDERGVQLEGKMIPTQTVI 259
Query: 367 WTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
W G + N+ L L+ G+ DE ++GHP +F +GD +
Sbjct: 260 WAAGVQA--------NSIASTLGATLDRSGRVSVDEFCNIEGHPEVFVIGDIANYSKGLE 311
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
RPLP + VA QQ + + + ++ PFR+ + G M +GR DA +
Sbjct: 312 RPLPGVSPVAMQQGRYVAALIQGDLKNKKRKPFRYVDKGSMATIGRTDAVAQMGVLR--- 368
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ G G A +L ++++ + ++W+
Sbjct: 369 MKGLFGWFAWLFVHLFYQVGFKNKITILITWV 400
>gi|308176532|ref|YP_003915938.1| NADH dehydrogenase [Arthrobacter arilaitensis Re117]
gi|307743995|emb|CBT74967.1| putative NADH dehydrogenase [Arthrobacter arilaitensis Re117]
Length = 455
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 202/473 (42%), Gaps = 86/473 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PRI I+GGG+ GLY A++L+ V V +VD + ++P L E+ G+++
Sbjct: 8 QKRPRILIVGGGYVGLYVAMKLQKKV--KAHGGIVTVVDPNPYMTYQPFLPEVAGGQIE- 64
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
PR + ++ + + DH +A +G L EY +V
Sbjct: 65 ----PRHVVVSHRQHLKHSELVNGSVLSIDHASKKAVIAPVNGEQFEL------EYTDIV 114
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIR-----VAVV 250
+S GA + + G AE T+E+A + K++E +E + D + R VV
Sbjct: 115 MSAGAITRTFPITGLAETGIGLKTIEEAVALRNKVAERIESASNMTDPVARKRALTFVVV 174
Query: 251 GCGYSGVELAA----------TVSERLEEKG----IVQAINVETTICPTGTPGNREAALK 296
G G++G+E A +++R++ K +V+A+ I P T E ++
Sbjct: 175 GGGFAGIETIAELEDMARHLIELNDRIDAKEARFVLVEAMG---RIMPEVTAEQAEWVVE 231
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI-AADKNSDKYILELQPAIKGL 355
L +R ++++L S+ E G + I ADK+ PA
Sbjct: 232 HLRSRGIEVLL-------------NTSLNSAEEGNLELINMADKS---------PAGS-- 267
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK---GHP--RI 410
F AD ++W G + P R D P+ RG+ ET L +K G P
Sbjct: 268 ----FGADTLIWCAGV------MANPMVRSTDFPIEQRGRIETRTDLRIKDANGDPLEGA 317
Query: 411 FALGDSSALRDSSGRPLP-----ATAQVAFQQADFAGWNLWAA-INDRPLLPFRFQNLGE 464
+A GD SA++D +G LP AQ A +QA NL+AA + ++ NLG
Sbjct: 318 WAAGDISAVKDVTG-GLPDGTCVPNAQHAVRQAKLLAKNLYAARYGVGTIKEYKHSNLGA 376
Query: 465 MMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+ GRN V G+ L G A + + + +PT E + +V WL
Sbjct: 377 VAGFGRNKGVAK---VMGLKLKGWPAWMAHRGYHGMAMPTFERKFRVVGDWLV 426
>gi|85708066|ref|ZP_01039132.1| NADH dehydrogenase [Erythrobacter sp. NAP1]
gi|85689600|gb|EAQ29603.1| NADH dehydrogenase [Erythrobacter sp. NAP1]
Length = 456
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 124/432 (28%), Positives = 185/432 (42%), Gaps = 66/432 (15%)
Query: 61 VTSEDESASQTYTWPD-KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119
V S +S P+ K+K +I I+GGG GGL +L + + K+ ++LVDQ+
Sbjct: 5 VISRSDSERHPIAIPEAKRKTQIVIVGGGAGGLELVRKLGAKYGR--KRHDIILVDQNLS 62
Query: 120 FVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG 179
++KP+L+E+ +G +DA + A G +FF+ R++ + P+
Sbjct: 63 HIWKPLLHEVAAGSLDANLDEVGYRGHCARWGYRFFQGRLESIDRKAKTIRLAPVMDDDD 122
Query: 180 GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFST-----------LEDACRVD 228
++ + YD LVL++G+ VPG AE + L RV
Sbjct: 123 EEII--GAHTIRYDMLVLAIGSVSNDFGVPGVAEHCLYLDSRRQADRFRTLLLNHCLRVS 180
Query: 229 RKLSELERRNFGKDSLIRVAVVGCGYSGVELAATV---SERLEEKG--IVQAINVETTIC 283
R + E N G DS ++VA+VG G +GVELAA + + L+ G + ++ TI
Sbjct: 181 RAMIE----NPGADSRVKVAIVGAGATGVELAAELYNAAGALKHYGLEVFDESRLDVTIL 236
Query: 284 PTGTPGNREAALKVL--SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341
G P A + L SARK LG VR +V E + ++G
Sbjct: 237 EAG-PRILPALPERLSTSARKELKALGVEVREGVQVVEAKRRQLITKTG----------- 284
Query: 342 DKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETD 399
+ EADL++W G K L L L+ R Q
Sbjct: 285 ----------------ETIEADLMVWAAGVK--------GAEFLSTLGLDTTMRNQIVVT 320
Query: 400 ETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
ETL P IFA+GD ++ DS P+P AQ A Q AD NL RPL F
Sbjct: 321 ETLQTVTDPDIFAIGDCASYSPDSDAPPIPPRAQAAHQMADTVFKNLRLREQGRPLKRFV 380
Query: 459 FQNLGEMMILGR 470
+Q+ G ++ L R
Sbjct: 381 YQDNGSLISLSR 392
>gi|228903571|ref|ZP_04067692.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis IBL
4222]
gi|434378216|ref|YP_006612860.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-789]
gi|228856000|gb|EEN00539.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis IBL
4222]
gi|401876773|gb|AFQ28940.1| pyridine nucleotide-disulfide oxidoreductase [Bacillus
thuringiensis HD-789]
Length = 392
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTNL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|187922128|ref|YP_001893770.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia phytofirmans PsJN]
gi|187713322|gb|ACD14546.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia phytofirmans PsJN]
Length = 439
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 188/456 (41%), Gaps = 66/456 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ + I+G GFGG+ A +L + V ++D+ +F+P+LY++ +
Sbjct: 7 NRHHVVIIGAGFGGIEVANQLAG------TEVDVTIIDRRNHHLFQPLLYQVAGASLSTS 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLIVEY 192
EIA L F++R + VN MA G V+L +G Y
Sbjct: 61 EIAWPIRYL--------FRNRPE---------VNTLMAEVEGVDQDAREVILNNGSRQSY 103
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA--- 248
D LVL+ GA FA TLEDA + R L+ E D R A
Sbjct: 104 DTLVLATGATHAYFGHDEWEPFAPGLKTLEDATTIRGRILAAFEEAERTSDPQQRAALQT 163
Query: 249 --VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
++G G +GVELA T++E + A + + T EA ++LS L
Sbjct: 164 FVIIGGGPTGVELAGTIAELARD---TLARDFRSIDPSTSRVVLIEAGQRLLSVFPEDLS 220
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y + + ++G E + P +G +++ + P A ++
Sbjct: 221 -AYTRQALEKLG-VEVVLGTPVTGC--------SAEGVVYGGTP---------LSARTIV 261
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
W G + P R + G+ L V GHP IFA+GD+++ G+P
Sbjct: 262 WAAGVQ------ASPAARWLSATSDRAGRVVVGPDLTVAGHPEIFAIGDTASCTMPDGKP 315
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
+P A A QQ + + + +P+ PF++++ G + +GR+ A + V+ L
Sbjct: 316 VPGIAPAAKQQGKYVASLIGRRLKGKPVDGPFKYRHQGNLATIGRSLAVIDMGRVK---L 372
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
G KLA++ L ++RL V +SW+ +I
Sbjct: 373 RGAFAWWIWKLAHIYFLIGTQNRLSVALSWVWNHSI 408
>gi|425457773|ref|ZP_18837471.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
gi|389800798|emb|CCI19956.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
Length = 446
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 189/454 (41%), Gaps = 65/454 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G +A T+EDA + R++ +E E + +L+ +V
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDAEKRQALLTFVIV 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E + + + I PT EA + +L
Sbjct: 165 GGGPTGVELAGAIAE-IAHGALRSDFH---QINPT------EAKILLLEGMD-------- 206
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
R + + + + ++ + ++ + + +G ++ A+ +L
Sbjct: 207 ----RVLPPYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETIL 262
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L N L+ G+ + L + G+ IF +GD +
Sbjct: 263 WAAGVKASRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAH 315
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PL A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+
Sbjct: 316 QGDKPLAGIAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK 375
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G I A++ L +++L V V W
Sbjct: 376 ---FSGFIAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|350568703|ref|ZP_08937101.1| NADH dehydrogenase [Propionibacterium avidum ATCC 25577]
gi|348660946|gb|EGY77642.1| NADH dehydrogenase [Propionibacterium avidum ATCC 25577]
Length = 469
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 153/372 (41%), Gaps = 48/372 (12%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R A G + R +
Sbjct: 60 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAAQNGSRTHFRRASVTD------- 112
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DR 229
T V +++G + YD+L+LS G PGAAE ++ T + R D
Sbjct: 113 ----VDTENRIVNVDNGDPISYDYLILSQGVGANFFGTPGAAEHSYTIYTRASSLRARDA 168
Query: 230 KLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPG 289
+ LE + +D V +VG G +GVE+A T++E + G P
Sbjct: 169 IFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAE----------------MKSIGIP- 211
Query: 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL- 348
A +S +V + L + + F+ +++ + D + I E+
Sbjct: 212 ---AIFPDVSTDRVHVTLVEMADHL--LMPFDPALRHYTRRQLQKRGVDVRTKTAIAEVR 266
Query: 349 QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD--LPLNARGQAETDETLCVKG 406
+ ++ + Q AD+V+W G + + D G+ TD TL V G
Sbjct: 267 EDSVLLKDGQTLPADMVIWAAGVG--------AHKSVSDWGFEQGRGGRIATDGTLRVNG 318
Query: 407 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 466
H RIFA+GD + ++ P P AQ A Q + + PL F +Q+ G M
Sbjct: 319 HDRIFAVGDGAI---NTEDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYQDKGTMA 375
Query: 467 ILGRNDAAVSPS 478
+GRN A V S
Sbjct: 376 TIGRNSAVVQLS 387
>gi|224476039|ref|YP_002633645.1| putative NADH dehydrogenase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420646|emb|CAL27460.1| putative NADH dehydrogenase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 401
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 174/404 (43%), Gaps = 60/404 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL T +L+ ++ D+ ++ L+D+ + +L+E +G V+ +I
Sbjct: 6 KVIVLGAGYAGLQTVTKLQKILPADE--AEITLIDKDDYHYESVLLHEASAGTVNYEDII 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++ V+F K V + P H V +G YD LV+ LG
Sbjct: 64 YPIESVINQERVKFLKGEVVKVDP-------------HAKVVETNNGRF-NYDILVVGLG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG----KD-SLIRVAVVGCGYS 255
+ + G + AF ++ A ++ R + E + N+ KD + V G G++
Sbjct: 110 FVSETFGIKGMLDHAFQIENIQTARKLSRHI-EDKFANYASSKEKDPKDLAFLVGGAGFT 168
Query: 256 GVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G+E ++ R++E K V V+ T EAA +L +LV Y V
Sbjct: 169 GIEFLGELTARVDELSNKYGVDRDKVKITCV--------EAAPTMLPMFDDELV-NYAVN 219
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E + P GA N +++++ G E Q EA+ +WT G +
Sbjct: 220 YLEERG-VEFKIGTPIVGA--------NEKGFLVKV-----GDEEQQLEANTSVWTAGVR 265
Query: 373 PLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPA 429
+++ D RG+ ++ L G F +GD SA + + RPLP
Sbjct: 266 ---------GSKIMDNSFEGVKRGRLVVNQDLTAPGFNETFVIGDVSAYIPEGEERPLPT 316
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
TAQ+A QQ + N+ +N +P PF + N G + LG +D
Sbjct: 317 TAQIAMQQGESVAKNVKNILNGQPKEPFNYVNRGTVCSLGAHDG 360
>gi|399044509|ref|ZP_10738112.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. CF122]
gi|398056929|gb|EJL48909.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. CF122]
Length = 423
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 107/429 (24%), Positives = 180/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I ++D D LL
Sbjct: 28 RITLVDRRNHHLFQPLLYQVATTILSTSDIAWPIRHLYSDR---------PDVTTLL--G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ +G++ T V L SG+ + YD LVL+ GA EP V PG
Sbjct: 77 EVVGID-----TAAKEVALRSGMTLRYDSLVLATGATHAYFGRDDWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R++ +E E +D+L+ +VG G +GVELA + E
Sbjct: 124 --LKTLEDATTIRRRVLLAFERAETETDPAIRDALLTFTIVGAGPTGVELAGIIVELARN 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V RV F +
Sbjct: 182 ALPREFRNIDT--------------------RKTRVVL---VEAGPRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + + + +LE A I + ++W G + P + D+
Sbjct: 219 GKALEELGVELHIGERVLECTAAGVETSEGIIPSRTIVWAAGIQ------ASPAAKWLDV 272
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P + G+ ++ L G P +F +GD++++ SG P+P A A QQ +A + A
Sbjct: 273 PADRAGRVIVEKDLTAPGFPDVFVVGDTASVIQESGAPVPGIAPAAKQQGAYAAKVIRAR 332
Query: 449 INDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
+ +P PFR+++ G + +G++ A + ++ L G I +A++ L
Sbjct: 333 LAAKPAPAPFRYRHQGSLATIGQSAAIIDFGRIK---LKGWIAWWIWGIAHIYFLIGTRS 389
Query: 508 RLKVGVSWL 516
R V SWL
Sbjct: 390 RFAVAWSWL 398
>gi|302338113|ref|YP_003803319.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Spirochaeta smaragdinae DSM 11293]
gi|301635298|gb|ADK80725.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Spirochaeta smaragdinae DSM 11293]
Length = 694
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 172/440 (39%), Gaps = 86/440 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQV--LLVDQSERFVFKPMLYELLSGEVDA 136
K I ILGGG+GG+ TA +L Q K+P++ L+D++ L+E+ V+
Sbjct: 3 KTNIVILGGGYGGVETAKKLHK---QFKKRPEIEITLIDRNPYHTLMTELHEVAGARVEP 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ FA + + V D + A G L EYD+LV
Sbjct: 60 DSVRVSFARIFSGKRVHVVLDEIT--------------AIDFTGKKLTGKSDSYEYDYLV 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------GKDSLIR 246
L GAEP VPGA E AF + EDA K+ E R F + L+
Sbjct: 106 LGTGAEPCFFGVPGAQEHAFTLWSFEDAM----KIREHTERMFLEASQTLDPEERKKLLT 161
Query: 247 VAVVGCGYSGVELAATVSER----LEEKGI----VQAINVET--TICPTGTPGNREAALK 296
AV G G++G+ELA + ER E GI V+ + VE I P ++ +K
Sbjct: 162 FAVAGAGFTGIELAGELVERRSTLCREYGIDESEVRIMVVEALGEILPILPEKLQQKTMK 221
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L V++ L E+ + + P+ + N D +
Sbjct: 222 YLEKHGVEICL-------------ESRITE----VTPDGFSTNNCDSH------------ 252
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
+A +WT G E DL + + DE L G +F GD
Sbjct: 253 ----DAKTFIWTCGVFGTAFGGEL------DLEQGHCSRQKADEYLRSPGKENVFLTGDM 302
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
++ +PLP + A Q A+ N+ A+I P+ F+ G M+ LG AVS
Sbjct: 303 VWFLENE-KPLPQIVETALQTAEVVAHNVAASIEGSPMKAFKSNYHGFMVSLG-GKYAVS 360
Query: 477 PSFVEGVTLDGPIGHSARKL 496
+ G+++ G + + L
Sbjct: 361 HNM--GISMSGFFATALKHL 378
>gi|423673171|ref|ZP_17648110.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM062]
gi|401310799|gb|EJS16108.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM062]
Length = 392
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATASLEARGVIFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKIVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFSPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|282853202|ref|ZP_06262539.1| pyridine nucleotide-disulphide oxidoreductase [Propionibacterium
acnes J139]
gi|386070693|ref|YP_005985589.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes ATCC 11828]
gi|422389583|ref|ZP_16469680.1| NADH dehydrogenase [Propionibacterium acnes HL103PA1]
gi|422457940|ref|ZP_16534598.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA2]
gi|422463608|ref|ZP_16540221.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL060PA1]
gi|422466751|ref|ZP_16543313.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA4]
gi|422468484|ref|ZP_16545015.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA3]
gi|422565925|ref|ZP_16641564.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA2]
gi|422576706|ref|ZP_16652243.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL001PA1]
gi|282582655|gb|EFB88035.1| pyridine nucleotide-disulphide oxidoreductase [Propionibacterium
acnes J139]
gi|314922488|gb|EFS86319.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL001PA1]
gi|314965567|gb|EFT09666.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA2]
gi|314982727|gb|EFT26819.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA3]
gi|315091383|gb|EFT63359.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA4]
gi|315094318|gb|EFT66294.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL060PA1]
gi|315105040|gb|EFT77016.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA2]
gi|327329110|gb|EGE70870.1| NADH dehydrogenase [Propionibacterium acnes HL103PA1]
gi|353455059|gb|AER05578.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes ATCC 11828]
Length = 460
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 158/375 (42%), Gaps = 54/375 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R A+ G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAAHNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
R D + LE + +D V +VG G +GVE+A T++E ++ GI P
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAE-MKSIGI-----------P 202
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
PG +S +V + L + + F+ +++ + D ++
Sbjct: 203 AIFPG--------VSTDRVHVTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTA 252
Query: 345 ILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
I E+ + ++ + Q AD+V+W G + H N G+ T+ TL
Sbjct: 253 IAEVRENSVLLKDGQTLPADMVIWAAG---VGAHKSVTN---WGFEQGRGGRIATNGTLL 306
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
VKG RIFA+GD + ++ P P AQ A Q + + PL F + + G
Sbjct: 307 VKGQDRIFAVGDGAI---NTEDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKG 363
Query: 464 EMMILGRNDAAVSPS 478
M +GRN A V S
Sbjct: 364 TMATIGRNSAVVQLS 378
>gi|386361687|ref|YP_006059931.1| NADH dehydrogenase, FAD-containing subunit [Thermus thermophilus
JL-18]
gi|383510714|gb|AFH40145.1| NADH dehydrogenase, FAD-containing subunit [Thermus thermophilus
JL-18]
Length = 394
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 156/362 (43%), Gaps = 54/362 (14%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++ IA L+ V + R L
Sbjct: 32 LLVDARNHHLFQPLLYQVATGFLEGPAIAYPLRALVRRGRVLLARARAVDL--------- 82
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231
G +LLE G ++ Y LV++ G+ P VPG E A TL A RV +L
Sbjct: 83 ------EGRRLLLEDGDVLPYRHLVVATGSLPSDLGVPGVGERALLLKTLGQALRVRHRL 136
Query: 232 SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR 291
R + + + + VVG G +GVEL+ ++E L P P
Sbjct: 137 LMALERAAREGAPLSLVVVGGGPTGVELSGALAEFLRYA------------LPRDFPEIP 184
Query: 292 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 351
EA + +L A R + F ++ + A+ ++ + + +
Sbjct: 185 EARVVLLEA------------GPRLLPAFRPALSRYAERALAHLGVEVLGAQVAAVEERG 232
Query: 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 411
++ + DLVLW VG + N L LP +ARG+ TD L + GHP ++
Sbjct: 233 VRLASGEGLVGDLVLWAVGVR---------GNPLPGLPADARGRVPTDPYLRLPGHPEVY 283
Query: 412 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
+GD + L P A VA QQ +A NL A+ + LPFR+++ G++ ++GRN
Sbjct: 284 VVGDLNGLG------FPQLAPVALQQGAWAAGNLLRALRGQDPLPFRYRDRGQLAVIGRN 337
Query: 472 DA 473
A
Sbjct: 338 RA 339
>gi|194015343|ref|ZP_03053959.1| NADH dehydrogenase ndh [Bacillus pumilus ATCC 7061]
gi|194012747|gb|EDW22313.1| NADH dehydrogenase ndh [Bacillus pumilus ATCC 7061]
Length = 406
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 182/437 (41%), Gaps = 79/437 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ L+E +G +
Sbjct: 6 KPKIVVLGAGYGGLMTVTRLTKQLGTND--ADITLVNKHNYHYETTWLHEASAGTLHHDR 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ ++ V F + V+ + + V+ G + YD+LV++
Sbjct: 64 CRYQIKDVINSSRVNFVQATVESINKEEK-------------KVVTSDGEL-SYDYLVVA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIR-----VAVVGCG 253
LGA P+ + G E+AF S + A R R+ EL+ + ++ R + V G G
Sbjct: 110 LGAVPETFGIAGLKEYAFSISNINSA-RQLREHIELQFATYNTEAEKRPERLTIVVGGAG 168
Query: 254 YSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNREA----ALKVLSAR 301
++G+E + R+ E + V+ I VE PT PG A A+ L +
Sbjct: 169 FTGIEFLGELGNRVPELCKEYDIDQKDVRIICVEA--APTALPGFDPALIDYAMNYLQGK 226
Query: 302 KVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
V+ +G ++ C PE I K+ D ++
Sbjct: 227 GVEFKIGTAIKEC------------TPEG-----IIVGKDDD--------------TEEI 255
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-AL 419
+A+ V+W G + P VE N RG+ + L V + +F +GD S +
Sbjct: 256 KAETVVWAAGVRG-NPIVEEAGFE------NMRGRVKVSPDLRVPENDDVFIIGDCSLII 308
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
+ RP P TAQ+A QQ + NL A + L F+ G + LG +D AV +F
Sbjct: 309 NEEINRPYPPTAQIAMQQGETVAKNLAALVKGGSLESFKPDIKGTVASLGEHD-AVGVAF 367
Query: 480 VEGVTLDGPIGHSARKL 496
G L G + +K+
Sbjct: 368 --GKKLQGTKASAMKKI 382
>gi|229099523|ref|ZP_04230451.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-29]
gi|229105681|ref|ZP_04236312.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-28]
gi|229118588|ref|ZP_04247940.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock1-3]
gi|407707567|ref|YP_006831152.1| enterotoxin / cell-wall binding protein [Bacillus thuringiensis
MC28]
gi|423377108|ref|ZP_17354392.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG1O-2]
gi|423440220|ref|ZP_17417126.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG4X2-1]
gi|423449632|ref|ZP_17426511.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5O-1]
gi|423463282|ref|ZP_17440050.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6O-1]
gi|423532635|ref|ZP_17509053.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB2-9]
gi|423542102|ref|ZP_17518492.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB4-10]
gi|423548335|ref|ZP_17524693.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB5-5]
gi|423619218|ref|ZP_17595051.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD115]
gi|423621873|ref|ZP_17597651.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD148]
gi|228664780|gb|EEL20270.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock1-3]
gi|228677729|gb|EEL31975.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-28]
gi|228683819|gb|EEL37769.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-29]
gi|401127913|gb|EJQ35620.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5O-1]
gi|401169439|gb|EJQ76685.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB4-10]
gi|401176364|gb|EJQ83560.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB5-5]
gi|401251543|gb|EJR57817.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD115]
gi|401262541|gb|EJR68682.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD148]
gi|401639710|gb|EJS57447.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG1O-2]
gi|402419991|gb|EJV52263.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG4X2-1]
gi|402422153|gb|EJV54395.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6O-1]
gi|402464889|gb|EJV96577.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuB2-9]
gi|407385252|gb|AFU15753.1| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis MC28]
Length = 392
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--FYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|406598578|ref|YP_006749708.1| respiratory NADH dehydrogenase II [Alteromonas macleodii ATCC
27126]
gi|407685571|ref|YP_006800745.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'English Channel 673']
gi|406375899|gb|AFS39154.1| respiratory NADH dehydrogenase II [Alteromonas macleodii ATCC
27126]
gi|407247182|gb|AFT76368.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'English Channel 673']
Length = 430
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 153/372 (41%), Gaps = 41/372 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ ++ LVD+S ++KP+L+E+ +G +D +A A +F + L
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYAIHAAAHHYRFQLGEMCSLNAQA 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G VL E + YD LVL++G+ PG AE + +L+ A R
Sbjct: 88 QTITLSPLIDEEGTQVLPERE--IHYDQLVLAVGSVSNDFGTPGVAEHCYFLDSLKQAER 145
Query: 227 VDRK-LSELERRNF--GKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283
R L++L R N KD+ I VA+VG G +G ELAA Q +V
Sbjct: 146 FHRALLNQLIRINQQEDKDARIDVAIVGAGATGTELAA------------QLHHVANLSK 193
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
G P + LK+ + +L + A+ + D
Sbjct: 194 AYGMPDMSASRLKITIVEAGERIL----------PALPERIANSARKALHKLGVDIKEQT 243
Query: 344 YILELQPAIKGLESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAET 398
+ E KGL ++ +ADL++W G V+ P+ +L N Q
Sbjct: 244 MVAEADA--KGLITKDGGRIDADLMVWAAG-------VKAPDFITKLALFETNRANQILV 294
Query: 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
D+ L H I+ LGD + +G+ +P AQ A Q AD N+ + N + F
Sbjct: 295 DKQLRSSSHKNIWVLGDCCGFQQENGKWVPPRAQSAHQMADIVAHNITSLFNQKDTKDFT 354
Query: 459 FQNLGEMMILGR 470
+++ G ++ L +
Sbjct: 355 YKDYGSLVHLSK 366
>gi|167855733|ref|ZP_02478488.1| NADH dehydrogenase [Haemophilus parasuis 29755]
gi|167853130|gb|EDS24389.1| NADH dehydrogenase [Haemophilus parasuis 29755]
Length = 427
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 165/370 (44%), Gaps = 48/370 (12%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
++LVD++ ++KP+L+E+ +G +D A + N +F + + + P++ + V
Sbjct: 32 IILVDKNISHLWKPLLHEVATGSLDDGTDALSYRAHAKNHHFEFRQGTLTQVKPAEKIIV 91
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G ++ E ++ YD LVL++G+ PG AE + E A ++
Sbjct: 92 LAPIYDEAGELLVAERTIV--YDKLVLAIGSRSNDFNTPGVAEHCIFLDSSEQAKVFHKR 149
Query: 231 LSELERR-NFGKDSLIRVAVVGCGYSGVELAATVSERLEE-----KGIVQAINVETTICP 284
+ EL + + + + +AVVG G +G+EL+A + ++ G + +++ T+
Sbjct: 150 MMELFLKFSNNNEKEVHIAVVGGGATGIELSAELYNAVKHLNSYGYGKLDNTSLKVTLLE 209
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
G E L L R V ++ +R +G V + + A+ KY
Sbjct: 210 AG-----ERLLPALPER----VSASAIKELRALG-----VDVLTNTPVIRATAEGLVTKY 255
Query: 345 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP----NNRLHDLPLNARGQAETDE 400
+ F+ADL++W G K P + NR++ + + Q TDE
Sbjct: 256 ------------DENFKADLMVWAAGVKA--PEITKTFGFETNRINQIAIKDTLQTLTDE 301
Query: 401 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 460
++ +GD + L + G+P+P AQ A Q A G N+ A + ++PL F F
Sbjct: 302 N--------VYVIGDCAFLLQADGKPVPPRAQAAHQMATVCGKNILAQLENKPLKAFIFD 353
Query: 461 NLGEMMILGR 470
+ G ++ R
Sbjct: 354 DKGSLISFSR 363
>gi|171914382|ref|ZP_02929852.1| hypothetical protein VspiD_24425 [Verrucomicrobium spinosum DSM
4136]
Length = 637
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 172/406 (42%), Gaps = 73/406 (17%)
Query: 133 EVDAWEIAPRFA---DLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
EV +APR L G F+ VKL VN P G +LL+ G+
Sbjct: 4 EVVGGSLAPRHVVNPIRLICDGADVFRGLVKL--------VNLP-----GKRLLLDGGVT 50
Query: 190 V-----EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDS 243
+D +V +LGAE L +PG +E A+ DA ++ + +E N D+
Sbjct: 51 AGTVEFTFDHIVFALGAEVDLTRIPGMSEHAYLVRNCGDAMKLRATIIGRMEEANLISDA 110
Query: 244 -----LIRVAVVGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNRE 292
L+ VVG GYSGVE A + + R E+ VQ + T+ +G E
Sbjct: 111 ATRRHLLSFIVVGGGYSGVETAGQMIDLLHSMCRFYEQ--VQPEDFSVTLVHSG-----E 163
Query: 293 AALKVLSARKVQLVLGYFVRCIRRVGE---FEASVKQPESGAIPNIAADKNSDKYILELQ 349
L +LSA+ + Y ++ +G F+A VK + + IL+
Sbjct: 164 KVLPMLSAK----LADYTSTQLQNMGVKILFKARVKAATARTV------------ILD-- 205
Query: 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 409
+ + +A V+ TVG+ P P + DLPL +G + T VKG
Sbjct: 206 ------DGRKIDAYTVVCTVGNAP-HPQILALGAS-GDLPLE-KGHVVVEATGQVKGCTH 256
Query: 410 IFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
++A GD ++ + G P TAQ A++Q G N+ A + R L PF F LGE+ +G
Sbjct: 257 VWAAGDCASFPKAGGGKCPETAQFAYRQGLLVGDNIAACLQGRSLAPFAFTGLGELASIG 316
Query: 470 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
A + G G I + YL++LP + +L+V W
Sbjct: 317 HRKAVAE---IFGWHFSGIIAWFMWRTIYLMKLPGLDRKLRVMSEW 359
>gi|146104827|ref|XP_001469921.1| putative NADH dehydrogenase [Leishmania infantum JPCM5]
gi|134074291|emb|CAM73037.1| putative NADH dehydrogenase [Leishmania infantum JPCM5]
Length = 527
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 117/469 (24%), Positives = 192/469 (40%), Gaps = 88/469 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + +LG G+ G Y AL + D + ++ VF P+L + +G ++
Sbjct: 11 KPNVVVLGTGWAGCYAALHV------DPNLCNIHVISTRNHMVFTPLLPQTTTGTLEFRS 64
Query: 139 IAPRFADL---LANTGVQFFK--------DRVKLLCP-------SDHLGVNGPMACTHGG 180
+ ++ LA +F + D ++ C S+++ VN
Sbjct: 65 VCEPITNIQPALAKPPHRFLRSVIYDVDFDEKQVKCVGVGVVGGSENVPVNT-------- 116
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNF 239
V YD+L+++ GA P +PG E AF + +A + ++L + + N
Sbjct: 117 -------FSVPYDYLIMAYGARPNTFNIPGVEEKAFFLREVNEARGIRKRLVQNIMTANL 169
Query: 240 GKDS------LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREA 293
S L+ VVG G +G+E AA ++E E NV T++ P
Sbjct: 170 PTTSIAEAKRLLHTVVVGGGPTGIEFAANLAEFFRE----DIKNVNTSLLPY-------C 218
Query: 294 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353
+ VL A + VLG F +RR G+ + E I A +D+ +
Sbjct: 219 KVTVLEAGE---VLGSFDTALRRYGQLRLNQLGVE---IRKTAVVGVTDEEVFTKS---- 268
Query: 354 GLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV----KGH 407
++ LV+W+ VGS P+ ++ RG+ D+ L V K
Sbjct: 269 ---GEVLPTGLVVWSTGVGSGPVTKALKCDKTN--------RGRISIDDHLRVLRDGKPI 317
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMM 466
P +FA GD +A S+ RPLP A VA +Q + G + + + + PF +++LG M
Sbjct: 318 PNVFAAGDCAA---SNERPLPTLAAVASRQGRYIGKEMNNLLKGKQMSRPFVYRSLGSMA 374
Query: 467 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+G A VS L+G K AYL L + +L V V+W
Sbjct: 375 SIGNRSAIVSLGDKFKFDLNGCAALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|418576721|ref|ZP_13140854.1| putative NADH dehydrogenase FAD-containing subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379324878|gb|EHY92023.1| putative NADH dehydrogenase FAD-containing subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 405
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 176/407 (43%), Gaps = 62/407 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ ++ +LG G+ GL T +L+ + D+ +V L+++++ L+E +G +
Sbjct: 8 RKKVLVLGAGYAGLQTITKLQKQISADE--AEVTLINKNDYHYEATWLHEASAGTI---- 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ DLL KD+V + + N T G I ++D LV+
Sbjct: 62 ---SYEDLLYPVESVVNKDKVNFVKAEVTKIDRNAKKVETDAG--------IFDFDILVV 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVGCG 253
SLG E + + G ++AF + A ++ R K + D + + V G G
Sbjct: 111 SLGFESETFGIKGMKDYAFQIENVLTARKLSRHIEDKFANYASSKQKDDKDLAIIVGGAG 170
Query: 254 YSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
++GVE +++R+ E K V+ V+ T EAA K+L +LV +
Sbjct: 171 FTGVEFLGELTDRIPELCNKYGVEQSKVKITCV--------EAAPKMLPMFSDELV-NHA 221
Query: 311 VRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
V + G EF+ P +AA N +++++ E Q EA+ V+W
Sbjct: 222 VNYLENKGVEFKIGT--------PIVAA--NEKGFVVKVND-----EEQQLEANTVVWAA 266
Query: 370 GSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRP 426
G + ++L + RG+ T + L ++G+ IF +GD SA + RP
Sbjct: 267 GVR---------GSKLMEESFEGVKRGRIVTKQDLTIEGYDDIFVIGDCSAFIPAGEERP 317
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQ+A QQ + N+ + +P F + + G + LG +D
Sbjct: 318 LPTTAQIAMQQGEHTAKNVKNILEGQPTNEFEYVDRGTVCSLGAHDG 364
>gi|288959430|ref|YP_003449771.1| NADH dehydrogenase [Azospirillum sp. B510]
gi|288911738|dbj|BAI73227.1| NADH dehydrogenase [Azospirillum sp. B510]
Length = 438
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 173/397 (43%), Gaps = 36/397 (9%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I I+GGG GL A RL V Q+ L+D+S V+KPML+ +G W I
Sbjct: 14 PHIRIVGGGVAGLILATRLGH-VMGSRGTAQISLIDRSPTHVWKPMLHTFAAG---TWNI 69
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L + G FK + D G +A + ++YD L+L+
Sbjct: 70 YQQQVQFLVHAGSHHFKYIPGEMAGLDREGRRLRLAPLRANGETIADARDLDYDLLILAT 129
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
G+ +PG AE + +A + KL R+F IR+A+ G G +GVEL
Sbjct: 130 GSRANDFAIPGVAEHCHFIDSQREADAFNDKLRTHVGRSFLHGDGIRIAIGGGGATGVEL 189
Query: 260 AATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 319
AA ++ +E G +++ + + T E+ ++L+A
Sbjct: 190 AAELTRMVELAGGYGEVDIRSRLRITLL----ESGPRILAA------------------- 226
Query: 320 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHV 378
F V + + + D I+ LES + EADL +W G +
Sbjct: 227 FPERVAASATEQLRGLGVDVRVGVKIVGADAGGYRLESGERIEADLKVWAAGIRA----S 282
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQ 437
E N L LN Q L + IFA+GD SS + + + RPLP+TAQVA QQ
Sbjct: 283 EAVGN--CGLELNRARQIVVAPNLQARNDDAIFAVGDCSSLIPEGAERPLPSTAQVANQQ 340
Query: 438 ADFAGWNLWAAIND-RPLLPFRFQNLGEMMILGRNDA 473
A +L + +++ RP+ PF F++LG ++ LG +A
Sbjct: 341 ALHLVAHLPSWVSERRPVPPFVFRDLGALVSLGEYNA 377
>gi|283835887|ref|ZP_06355628.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Citrobacter youngae ATCC 29220]
gi|291068058|gb|EFE06167.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Citrobacter youngae ATCC 29220]
Length = 399
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 166/423 (39%), Gaps = 79/423 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ +I I+G GF G++ AL L + + + ++ +P YE +
Sbjct: 2 RKQILIVGAGFAGMWAALSAARLADKHQQTIDITVIAPQPELRVRPRFYESAVQTL---- 57
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+AP L TGV F + V+ + P S + H + YD LVL
Sbjct: 58 VAP-LQPLFDVTGVNFLQGHVEQILPASKEVSWKDASGEIH----------LRRYDRLVL 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL------ERRNFGKDSLIRVAVVG 251
+ G+ D V GAAE AF LE A ++++ L +L E RN V V G
Sbjct: 107 ASGSHVNRDAVAGAAEHAFDLDQLESAAKLEQHLKDLALQPQSEARN-------TVVVCG 159
Query: 252 CGYSGVELAATVSERLEE----KGIVQAINVETTICPTGTPGN--REAALKVLSARKVQL 305
G++G+E+A + RL E + + VE P G R+ ++ + V+
Sbjct: 160 GGFTGIEMALELPGRLREILGADAKTRVVVVERGAQPGGRWSQELRDVIIEASAELGVEW 219
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
++ V C+ N+ L+ + ++ A V
Sbjct: 220 LVNAEVECV-------------------------NTSGVTLK--------DGKVIAAQTV 246
Query: 366 LWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDS 422
+WTVG + L + P +R L +NA L V GH I+A GD + A D
Sbjct: 247 IWTVGVQANSLTAQINAPRDRQGRLHVNA--------NLQVVGHDDIYATGDVAYAATDD 298
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 482
G T Q A FAG N A + D P LP+R +N + LG A + + +
Sbjct: 299 KGNHALMTCQHAILLGKFAGNNAAADLLDVPPLPYRQENYVTCLDLGAWGAVYTEGWDQQ 358
Query: 483 VTL 485
V L
Sbjct: 359 VKL 361
>gi|222152298|ref|YP_002561473.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus uberis
0140J]
gi|222113109|emb|CAR40504.1| pyridine nucleotide-disulphide oxidoreductase [Streptococcus uberis
0140J]
Length = 403
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 173/407 (42%), Gaps = 67/407 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ +LG G+ GL T +L+ + + LVD++E L+E+ SG +I+
Sbjct: 4 VLVLGAGYAGLKTVRQLQ----KQSGDFHITLVDRNEYHYEATELHEVASGSQPKEKISF 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ V F +D V + P + TV L++ + YD++V++LG
Sbjct: 60 SIKDVINPKKVTFIQDDVVKVNPESN-------------TVELKANGTLHYDYVVVALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKD-SLIRVAVVGCGYSGVEL 259
+ + GA E A ++ A + R L +E+ KD + +R+ + G G++G+EL
Sbjct: 107 CSETFGISGAKENALEMVDIKSAENIHRHILKMMEKYRETKDKNYLRLLICGAGFTGIEL 166
Query: 260 A-ATVSER---LEEKGI----VQAINVE--TTICPTGTPGNREAALKVLSARKVQLVLGY 309
A A V ER E G+ ++ I VE T I P + + ++ VQL+LG
Sbjct: 167 AGALVDERKRYAEIAGVSENQIEIICVEAATRILPMFDDEMAQYGVDLIKKLGVQLMLGS 226
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
++ I+ GE V P+ A E A+ ++WT
Sbjct: 227 MIKEIKP-GEV-VYVTSPDEDA------------------------ERHSIVAETIIWTT 260
Query: 370 G--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRP 426
G P++ R G+ + L + ++ LGD SAL DS S RP
Sbjct: 261 GVSGSPVMAESGFAERR---------GRVIVNNDLRDPKYDNVYILGDVSALMDSESNRP 311
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQ+A + A NL + + F +++LG + +G A
Sbjct: 312 YPTTAQIATRMGAHAAKNLLLQLKGEAPVDFNYKSLGTVASVGNTHA 358
>gi|418751816|ref|ZP_13308088.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. MOR084]
gi|409967545|gb|EKO35370.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. MOR084]
Length = 422
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 97/455 (21%), Positives = 184/455 (40%), Gaps = 71/455 (15%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K + ++G GFGGL +L + ++ ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKAVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + V ++ + YD+L
Sbjct: 58 PADIAIPIRSLVGE------RSNVTVVLGE-------ATKVDLAAKTVYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVAV 249
+LS GA ++ L+DA ++ KL E+ D +L+ +
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKLLISFEKAELSGDPEVVKALLNYVI 164
Query: 250 VGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
+G G +GVELA +++E R E I A++ T I EAA ++L+ V
Sbjct: 165 IGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLTTFDV 215
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
L GEF + K+ ES + + + ++++ LE ++
Sbjct: 216 SL------------GEF--TKKRLESRGVEVLTGAR-----VIDIDERGVQLEGKMIPTQ 256
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
V+W G + N+ L L+ G+ DE ++GHP +F +GD +
Sbjct: 257 TVIWAAGVQA--------NSIASTLGATLDRSGRVSVDEFCNIEGHPEVFVIGDIANYSK 308
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
RPLP + VA QQ + + + ++ PFR+ + G M +GR DA +
Sbjct: 309 GLERPLPGVSPVAMQQGRYVAALIQGDLKNKKRKPFRYVDKGSMATIGRTDAVAQMGVLR 368
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ G G A +L ++++ + ++W+
Sbjct: 369 ---MKGLFGWFAWLFVHLFYQVGFKNKITILITWV 400
>gi|414163182|ref|ZP_11419429.1| hypothetical protein HMPREF9697_01330 [Afipia felis ATCC 53690]
gi|410880962|gb|EKS28802.1| hypothetical protein HMPREF9697_01330 [Afipia felis ATCC 53690]
Length = 436
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 110/416 (26%), Positives = 177/416 (42%), Gaps = 56/416 (13%)
Query: 73 TWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSG 132
T P PRI I+GGG GGL A RL + K+ Q++LVD++ ++KP L+E+ +G
Sbjct: 2 TPPPGTLPRIVIVGGGAGGLELATRLGHRLGH--KQAQIVLVDRNPSHLWKPRLHEVAAG 59
Query: 133 EVDAWEIAPRFADLLANTGVQF-FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
+ + + + G F F + + + + ++ ++ G +L E L
Sbjct: 60 LIGSGDDETNYLAHGCVHGFDFAFGSLLSIDPTAKTVKLDRVLSPADGSEILGERTL--H 117
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVAVV 250
YD LVL+LG+ +PG E+ + A ++ R L + G+ +RV +V
Sbjct: 118 YDTLVLALGSRVNDFGIPGVLEYCHMLDSPAQALKLQRAFLDAAIQVGAGRLDRVRVGIV 177
Query: 251 GCGYSGVELAATVSERLEE-----------KGIVQAINVETTICPTGTPGNREAALKVLS 299
G G +GVELAA + + K + +++ + I P P A KVL
Sbjct: 178 GAGATGVELAAELHHAVHAMERWGGLGASGKLDITLVDMASRILPAVDPKTSSHATKVLE 237
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
V+++LG ++ + AD K + IK S +
Sbjct: 238 KLGVRILLGQ---------------------SVERVTADALHLKGGKTVPCEIKVWASGV 276
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
D+V +L L L + + D+ L G P IFA+GD +A
Sbjct: 277 SGHDIV-----------------AKLKGLSLTPGNRIKVDDHLACIGAPDIFAMGDCAAA 319
Query: 420 RDSSGRPL-PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
G L P TAQVA QQA++ L + R + PF++Q G ++ LG AA
Sbjct: 320 PAHIGNALVPPTAQVAHQQANYLAKLLERRLAGRSIGPFKYQPRGTLVSLGEGGAA 375
>gi|423484868|ref|ZP_17461557.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6X1-2]
gi|401136719|gb|EJQ44305.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6X1-2]
Length = 392
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATASLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKIVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|428222013|ref|YP_007106183.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
gi|427995353|gb|AFY74048.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
Length = 440
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 174/445 (39%), Gaps = 76/445 (17%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT- 150
LY A +L+ + ++ L+D+ +F+P+LY++ +G + +IA +LAN
Sbjct: 16 LYAAQKLQGI------DARITLIDKRNFHLFQPLLYQVATGVLSPADIASPLRGVLANQK 69
Query: 151 GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPG 210
VK + P + + G ++YD+ +++ G
Sbjct: 70 NTTVLMGEVKDIDPDSK-------------KIYVSGGEEIDYDYAIVATGVSHHYFGNDH 116
Query: 211 AAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVS 264
+++A T+EDA + R++ +E E + +L+ V+G G +GVELA +
Sbjct: 117 WSQWAPGLKTVEDAINIRRRILDAFETAEKETDPEKRKALLTFVVIGGGPTGVELAGAIG 176
Query: 265 ERLEEKGIVQAINVETT------------ICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
E + N+ TT I P P +A L+ V + G V
Sbjct: 177 ELANHTLHDEFSNINTTEAEILLLEGFERILPPYAPDLSASATDALTKLGVTVKTGAIVT 236
Query: 313 CIR-RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
I V F G ++ A +LW G
Sbjct: 237 NIHDHVVTFRC-------------------------------GDRTEEVTAQTILWAAGV 265
Query: 372 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPAT 430
K + + D PL+ G+ L V HP +F +GD + G+PLP
Sbjct: 266 KA--SALGEILAKRADAPLDRVGRVMVSPDLSVPNHPSLFVIGDLAHYAHQDEGKPLPGV 323
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
A VA QQ +F L A I + PL FR+ + G + ++GRN A V F++ + +
Sbjct: 324 APVAMQQGEFIAKLLKAQIRNLPLPQFRYVDRGSLAVIGRNAAVVDLRFMKLTGMPAWLI 383
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSW 515
+ + YL+ +++L V V W
Sbjct: 384 WTFLHIFYLVEF---DNQLVVMVQW 405
>gi|223041857|ref|ZP_03612045.1| NADH dehydrogenase [Actinobacillus minor 202]
gi|223017350|gb|EEF15773.1| NADH dehydrogenase [Actinobacillus minor 202]
Length = 425
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 155/373 (41%), Gaps = 55/373 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
KK V+L+D++ ++KP+L+E+ +G +D A + + F + + L +
Sbjct: 27 KKANVILIDRNSTHLWKPLLHEVATGSLDDGTDAVSYRAHATHHNFSFRQGTMSGLDREN 86
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LVL++G++ G E F E A
Sbjct: 87 KQVIIAPIYNEEGELLVAERR--IAYDKLVLAIGSQSNDFGTKGVKENCFFLDGSEQAKM 144
Query: 227 VDRK-LSELERRNFGKDSLIRVAVVGCGYSGVELAA---TVSERLEEKGI--VQAINVET 280
++ L + + +F D +++A+VG G +G+EL+A + L + G ++ N+
Sbjct: 145 FQKRFLESVLKFSFNDDHDVKIAIVGGGATGIELSADLYNAAAHLNDYGFGKLKRTNINV 204
Query: 281 TICPTG-------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 333
T+ G T AAL L+ V + L V + E G I
Sbjct: 205 TLIEAGPRLIPALTEKVSAAALSELTKTGVDVRLNTMV------------TEALEDGLIT 252
Query: 334 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393
K+ +K EADL++W G K P + N
Sbjct: 253 -----KDGEK----------------IEADLMVWAAGVKA------PEFTKEFGFETNRL 285
Query: 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453
Q E TL ++ +GD +AL G+P+P AQ A Q A G N+ AA+ +P
Sbjct: 286 NQIEIKNTLQTTVDDSVYVIGDCAALI-QDGKPIPPRAQAAHQMAKVCGKNIVAALEGKP 344
Query: 454 LLPFRFQNLGEMM 466
L F+F + G ++
Sbjct: 345 LQSFKFNDKGSLL 357
>gi|302543635|ref|ZP_07295977.1| putative NADH dehydrogenase [Streptomyces hygroscopicus ATCC 53653]
gi|302461253|gb|EFL24346.1| putative NADH dehydrogenase [Streptomyces himastatinicus ATCC
53653]
Length = 481
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 187/455 (41%), Gaps = 55/455 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEV 134
K+ RI ++GGG+ G+YTALRL+ + ++ + QV++VD ++P L E +G +
Sbjct: 32 KEPARILVVGGGYVGMYTALRLQRKLKRELRHGAVQVIVVDPEPYMTYQPFLPEAAAGSI 91
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ +L + Q V + +A GT +E V YD
Sbjct: 92 SPRHVVVPLRRVLGD--CQVIIGEVTAIQHGKRTATIRTLATEEEGTGSIE----VHYDE 145
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----RRNFGKDSLIRVA 248
LVL+ G+ + VPG AE F T+E+A + + L +L+ R +DS +
Sbjct: 146 LVLAPGSVSRTLPVPGLAETGIGFKTVEEAIGLRNHVLEQLDIASSTRDPDVRDSALTFV 205
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
VG GY+GVE + + A+ I P LK +
Sbjct: 206 FVGGGYAGVEALGELEDMAR-----YAVRYYHNIAPED--------LKWILVEATN---- 248
Query: 309 YFVRCIRRVGE--FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLV 365
R + VGE +V + S I D + + Q I L + F +
Sbjct: 249 ---RILPEVGEEMGRYAVSELRSRNI-----DVRLETRLDSCQDRIAVLSDGSRFPTRTL 300
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-- 423
+WT G KP P DLPLN RG+ L V G +A GD++++ D +
Sbjct: 301 VWTAGVKP------SPILAATDLPLNDRGRLACTAALQVDGVEHAWAAGDAASVPDRTAA 354
Query: 424 --GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
G AQ A +QA NL A+++ RPL + + +G + LG + + +
Sbjct: 355 EPGAVCAPNAQHAVRQAKVLAENLLASLDGRPLSDYEHKYVGSVASLGLHRGV---AHLY 411
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G G ++ +L R+PT + +V W+
Sbjct: 412 GRKAKGYPAWFMHRVYHLSRVPTFNRKARVLAEWI 446
>gi|295707026|ref|YP_003600101.1| NADH dehydrogenase YumB [Bacillus megaterium DSM 319]
gi|294804685|gb|ADF41751.1| NADH dehydrogenase YumB [Bacillus megaterium DSM 319]
Length = 404
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 179/419 (42%), Gaps = 83/419 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP+I ILG G+GG+ T + L+ + D +++LV++++ L+E+ +G +
Sbjct: 2 KKPKIVILGAGYGGIMTIVNLQKKLGASD--AEIVLVNKNDYHYETTWLHEVSAGTIHQD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L+ V F KD V + + VLLE+ + YD+LV+
Sbjct: 60 RSRVPVKNLINTNKVTFIKDTVVDIKLDEK-------------RVLLENSELT-YDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFGKDSLIRVAV 249
+LG E + + G E AF +++ A ++ + +E+E+R D L+ + V
Sbjct: 106 ALGYEAETFGIKGLKEHAFTITSINAARQIREHIDYVFATYNNEVEKR----DELLTIIV 161
Query: 250 VGCGYSGVELAATVSERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKV 297
G G++G+E ++ R+ + + V+ I VE PT PG E A+
Sbjct: 162 GGAGFTGIEFVGELANRVPQLCKEFDIPREKVRVICVEA--APTALPGFDPELVEYAVTQ 219
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L + ++ +G ++ + E G + + D + E++ A
Sbjct: 220 LERKGIEFKIGTAIK------------ECTEEGIVV------SKDDQVEEIKSAT----- 256
Query: 358 QIFEADLVLWTVGSKPLLPHV-EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
V+W G + HV E N RG+ + +L GH +F +GD
Sbjct: 257 -------VVWAAGVRG--SHVIEKAGFE------NMRGRVKVSNSLLAPGHEDVFVIGDC 301
Query: 417 SALRD-SSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 473
S + + + RP P TAQ+A QQ N+ + + L F+ G + LG +DA
Sbjct: 302 SLMINPETERPYPPTAQIAMQQGGTCAENISRLMKGQKELSEFKPDIKGTVCSLGHDDA 360
>gi|329766038|ref|ZP_08257599.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137493|gb|EGG41768.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 400
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 169/358 (47%), Gaps = 45/358 (12%)
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-RRNFG----KDS 243
+EYD+LVL++G++ E +FP T+EDA + ++ LS +E G +
Sbjct: 56 LEYDYLVLAVGSDNNFYGNKPIEENSFPIKTVEDAIELRNQTLSMMEIAAQTGSVELQQK 115
Query: 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
+ VVG G++GVE+ ++ + K + QA PT N L + S ++
Sbjct: 116 FLTFTVVGAGFAGVEIIGEINHFVR-KSVKQAY-------PTINENNINMIL-ISSKNEI 166
Query: 304 QLVLGYFVRCIRRVGEFEAS-VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
L Y ++GE S +K+ I N+ A + ++ EL + +I
Sbjct: 167 LPELNY------KLGESARSYLKKMGVRIISNVKAIDAGESHV-ELS------DGEIIPC 213
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALR 420
++WT G N+ + L + G+ D+ L +K HP +FALGD +A+
Sbjct: 214 TTLIWTGGV--------TTNSMIKSLICEHDKGGKVLVDKFLRLKDHPEVFALGDCAAIL 265
Query: 421 DS-SGRPLPATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
D+ +G+ P TAQ A +++ N+ ++ +D L F +Q+ G M +G N A V+
Sbjct: 266 DTDTGKFYPPTAQHALRESTVVAQNIKKSLESDSNLKEFSYQSKGMMATIG-NKAGVAS- 323
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS-VALLQSTLTKVL 535
+ G+++ G + + YL LPT E ++K+G+ W S + + L+ T TK L
Sbjct: 324 -LMGLSITGVLAWVIWRTYYLSHLPTFESKVKIGIGWAINSFFGTDLTLIGETKTKYL 380
>gi|418746409|ref|ZP_13302735.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. CBC379]
gi|410792684|gb|EKR90613.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. CBC379]
Length = 422
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 185/461 (40%), Gaps = 83/461 (18%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K + ++G GFGGL +L + ++ ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKAVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI------ 189
+IA L+ N + V L S +
Sbjct: 58 PADIAIPIRSLVGERS-------------------NVTVVLGEATKVDLASKTVYYQNTS 98
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----S 243
YD+L+LS GA ++ L+DA ++ KL E+ D +
Sbjct: 99 TNYDYLILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKLLISFEKAELSGDPEVVKA 158
Query: 244 LIRVAVVGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKV 297
L+ ++G G +GVELA +++E R E I A++ T I EAA ++
Sbjct: 159 LLNYVIIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRL 209
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L+ V L GEF + K+ ES + + + ++++ LE
Sbjct: 210 LTTFDVSL------------GEF--TKKRLESRGVEVLTGAR-----VIDIDERGVQLEG 250
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGD 415
++ V+W G + N+ L L+ G+ DE ++GHP +F +GD
Sbjct: 251 KMIPTQTVIWAAGVQA--------NSIASTLGATLDRSGRVSVDEFCNIEGHPEVFVIGD 302
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ RPLP + VA QQ + + + ++ PFR+ + G M +GR DA
Sbjct: 303 IANYSKGLERPLPGVSPVAMQQGRYVAALIQGDLKNKKRKPFRYVDKGSMATIGRTDAVA 362
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + G G A +L ++++ + ++W+
Sbjct: 363 QMGVLR---MKGLFGWFAWLFVHLFYQVGFKNKITILITWV 400
>gi|288553983|ref|YP_003425918.1| NADH dehydrogenase NDH-2A [Bacillus pseudofirmus OF4]
gi|154466452|gb|ABS82453.1| Ndh2-1 [Bacillus pseudofirmus OF4]
gi|288545143|gb|ADC49026.1| NADH dehydrogenase, NDH-2A [Bacillus pseudofirmus OF4]
Length = 405
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 157/384 (40%), Gaps = 73/384 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I +LG G+GG+ TA RL + ++ + LV++ + L+E +G +
Sbjct: 7 KKPSIVLLGAGYGGMITATRLSKQLGHNE--ANITLVNKHDYHYQTTWLHEPAAGTLSPE 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L ++F KD V + T V+LE+G + +YD+LV+
Sbjct: 65 RTRMEIKSVLDLNKIKFVKDSVVEI-------------KTDVKKVILENGEL-DYDYLVV 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNF---GKDSLIRVAVVGCG 253
LG+E + VPG E AF T+ A V + + R N +D L+ + V G G
Sbjct: 111 GLGSEAETFGVPGVHEHAFSKWTVNGAREVKEHIEYQFARYNNMTEKRDELLTLIVAGAG 170
Query: 254 YSGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
++G+E +SER+ EK + I T P P E A+ +L AR V
Sbjct: 171 FTGIEFIGELSERVPELCKHYDIPREKVKMYVIEAAPTALPGFDPELVEYAMNLLEARGV 230
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ + ++ + G AS + +A+
Sbjct: 231 EFKINCPIKEVTETGVTLASGDE---------------------------------IKAE 257
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSAL-RD 421
V+W G + ++ + A RG+ + + L GH +F +GD + L +
Sbjct: 258 TVVWATGVR--------GSSVIEKSGFEAMRGRIKVEPDLRAPGHDDVFIIGDCALLINE 309
Query: 422 SSGRPLPATAQVAFQQADFAGWNL 445
RP P TAQ+A Q A+ N+
Sbjct: 310 EINRPYPPTAQIAMQMAETCAENI 333
>gi|242373108|ref|ZP_04818682.1| NADH dehydrogenase [Staphylococcus epidermidis M23864:W1]
gi|242349262|gb|EES40863.1| NADH dehydrogenase [Staphylococcus epidermidis M23864:W1]
Length = 402
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 62/409 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D+ ++ L++++E L+E +G ++
Sbjct: 3 QNRKKVLVLGAGYAGLQTVTKLQKEISTDE--AEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DL+ +D+V + + N T G + +YD L
Sbjct: 60 ------YEDLMYPVESALKQDKVNFVVAEVTKIDRNAKRVETDKG--------VYDYDVL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G ++AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIDGMKDYAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLAILVG 164
Query: 251 GCGYSGVELAATVSERLEE----KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
G G++G+E ++ER+ E GI Q+ V+ T EAA K+L +LV
Sbjct: 165 GAGFTGIEFLGELTERIPELCSKYGIDQS-KVKITCV--------EAAPKMLPMFSDELV 215
Query: 307 LGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
Y V + G EF+ A P +A N +++E+ E Q EA
Sbjct: 216 -SYAVNFLEDRGVEFKI--------ATPIVAC--NDKGFVVEVNG-----EKQQLEAGTS 259
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSG 424
+WT G + H+ + RG+ + L ++GH IF +GD SA + +
Sbjct: 260 VWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHDDIFVIGDCSAFIPEGEE 312
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ + N+ +N F + N G + LG +D
Sbjct: 313 RPLPTTAQIAMQQGEHVAKNIKHILNGEAKEDFHYVNRGTVCSLGSHDG 361
>gi|24375021|ref|NP_719064.1| respiratory NADH dehydrogenase II Ndh [Shewanella oneidensis MR-1]
gi|24349762|gb|AAN56508.1| respiratory NADH dehydrogenase II Ndh [Shewanella oneidensis MR-1]
Length = 429
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 154/377 (40%), Gaps = 56/377 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYLRGEIE-QCDPDTKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 RLAAVYSDSGELLLEPRQI-EYDFLVLALGGVSNSFNTLGAEQHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI---------VQAINV 278
L + + + + +VG G +GVELAA V E ++E G V I
Sbjct: 152 LLDALLQLNETQEKVSIGIVGAGATGVELAAELHHVIESVKEYGYLNISKHHLDVHLIEA 211
Query: 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
I P A VL ++L +G V+ + R
Sbjct: 212 SPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTR---------------------- 249
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQA 396
D +I + + + +A L +W G V+ P LP+ R Q
Sbjct: 250 ---DGFITQ--------DGDMIKASLKVWAAG-------VKGPKAFQNFSKLPITPRNQV 291
Query: 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456
E D + VKG I+A+GD + L SG+P+P AQ A Q AD N+ + + P
Sbjct: 292 EVDACMRVKGQQDIYAIGDCALLILDSGQPVPPRAQAAAQMADTLYENIVNRLQGKVEKP 351
Query: 457 FRFQNLGEMMILGRNDA 473
F +++ G ++ L R A
Sbjct: 352 FVYKDYGSLVSLSRFSA 368
>gi|329766193|ref|ZP_08257751.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137252|gb|EGG41530.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum limnia SFB1]
Length = 415
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 181/429 (42%), Gaps = 60/429 (13%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
++ + +F PML ++ SG ++ I ++ T +F++ RVK + P L
Sbjct: 1 MISEDNFLLFTPMLPQVASGMIETRHIVMPIREICKKT--KFYEGRVKNVDPFGKL---- 54
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKL 231
T GT + G+ + YD+LV++LG+E + + A+ TL DA + +R +
Sbjct: 55 ---VTLWGTAD-KRGISIHYDYLVVALGSETNFFGMADVEKNAYTMKTLNDAVVLRNRAI 110
Query: 232 SELERRN-----FGKDSLIRVAVVGCGYSGVELAATVSERLEE---------KGIVQAIN 277
LE+ +DS + VVG G++G+E A + + L + K ++ I
Sbjct: 111 DMLEQAENETDVILRDSFLTFVVVGGGFAGIETAGELLDLLLDARKHYHTIRKEDIRVIV 170
Query: 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF---EASVKQPESGAIPN 334
+E P PG E K + ++ G +R V F E +VK + +
Sbjct: 171 LEA--LPMILPGFNEKLAKFSKEKLIER--GIDIRLKTAVTSFDGIEVNVKSLDENVKDS 226
Query: 335 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394
I DKN E ++WT G V P N + +G
Sbjct: 227 I--DKN---------------EIDSIRTKTLIWTAG-------VTPVNTIKRSMLKTDKG 262
Query: 395 QAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453
+ ++ L V P +FA+GD + D + RP TAQ+A QA A +NL A I +
Sbjct: 263 KVIVNDFLEVTEFPGVFAIGDCALFMDPQTNRPYAPTAQLAEAQAKIAAYNLKALIKNFE 322
Query: 454 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 513
F + + G+M I+G+ +F+ G+ + G + + YL ++ + ++ +
Sbjct: 323 KKKFVYHSKGQMAIIGKRTGI--ATFL-GMNISGFLAWLIWRNVYLSKVALPNKKFRIFL 379
Query: 514 SWLTKSAID 522
W+ D
Sbjct: 380 DWIIDILFD 388
>gi|448747726|ref|ZP_21729381.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halomonas titanicae BH1]
gi|445564669|gb|ELY20786.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halomonas titanicae BH1]
Length = 432
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 178/425 (41%), Gaps = 52/425 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +++L+D++ V+KP+L+EL +G +++ + DL ++ F++ + L
Sbjct: 30 KRAEIVLLDRNTTHVWKPLLHELATGVLNS---SMDEVDLRGHSSAHFYRYQRGSLT--- 83
Query: 167 HLGVNGPMACTHGGTVLLESGLIV------EYDWLVLSLGAEPKLDVVPGAAEFAFPFST 220
G+N + E G V YD+LV+++G+ PG E +
Sbjct: 84 --GINREQQTLQLAPIHDEDGQEVLPARELAYDYLVMAIGSVSNDFGTPGVTEHCHFIDS 141
Query: 221 LEDACRVDRKLSELERR----NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276
E A R + R N + + + + +VG G +GVELAA E + ++ A
Sbjct: 142 PEQAKAFQRDMINTFLRYTDPNLRQHTQLTIGIVGGGATGVELAA---ELFDASRMLNAY 198
Query: 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 336
V + +++ ++ +L A R + V Q + ++
Sbjct: 199 GVTSV-------DHQQISVHLLEA------------APRLLPGLSERVSQTVKTELESMG 239
Query: 337 ADKNSDKYILELQPA--IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394
++D + E Q I G + ++ + D+ +W G K PP L N +
Sbjct: 240 VTVHTDTAVKEAQAHQLITG-DDEVIKTDINVWAAGIKA------PPFLAELGLTTNKKN 292
Query: 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 454
Q E TL +IFALGD ++ +P AQ A QQA NL + +PL
Sbjct: 293 QIEVKSTLQSVDDEKIFALGDCASCPMGESGTVPPRAQAAHQQAKLLAKNLVNKLEGKPL 352
Query: 455 LPFRFQNLGEMMILGRNDAA---VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 511
FR+++ G ++ L R DA + S G+ L+G + A Y + + K
Sbjct: 353 ADFRYRDHGSLVSLARYDAVGNLMRSSASRGLFLEGWLARQAYASLYRMHQLSIHGAPKT 412
Query: 512 GVSWL 516
G++WL
Sbjct: 413 GLAWL 417
>gi|418635333|ref|ZP_13197711.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
lugdunensis VCU139]
gi|374841981|gb|EHS05434.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
lugdunensis VCU139]
Length = 402
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/409 (23%), Positives = 177/409 (43%), Gaps = 62/409 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++ +I +LG G+ GL T +L+ V ++ ++ LV++++ L+E +G +
Sbjct: 3 QERKKILVLGAGYAGLQTVTKLQKHVSAEE--AEITLVNKNKYHYESTWLHEASAGTIS- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DL+ KD+V + + N T G I YD L
Sbjct: 60 ------YEDLIYPVESVLKKDKVNFVNAEVTKIDRNAKKVETDSG--------IFNYDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG E + + G ++AF ++ A + R + E + N+ D+ + + V
Sbjct: 106 VVALGFETETFGISGMKDYAFQIENVDTARHLSRHI-EDKFANYAASKEKNDNDLAILVG 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETT--ICPTGTPGNREAALKVLSARKVQLVLG 308
G G++G+E +++R+ E +N E C EAA K+L +LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCNKYGVNQEKVRITCV-------EAAPKMLPMFSDELV-N 216
Query: 309 YFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y V+ + G EF+ A P +A N +++++ + Q EA +W
Sbjct: 217 YAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVKIND-----QEQQLEAGTSVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSG 424
G + ++L + RG+ + L ++GH IF +GD SA +
Sbjct: 262 AAGVR---------GSQLMEASFEGVKRGRIVNKQDLTIEGHDDIFVIGDVSAFIPAGEE 312
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ + N+ +N + F + + G + LG +D
Sbjct: 313 RPLPTTAQIAMQQGEHVAKNIKHILNGEATVDFEYVDRGTVCSLGSHDG 361
>gi|343084400|ref|YP_004773695.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyclobacterium marinum DSM 745]
gi|342352934|gb|AEL25464.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyclobacterium marinum DSM 745]
Length = 440
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 176/420 (41%), Gaps = 65/420 (15%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ PRI ++G GF GL A +L+ +K QV+L+D++ F+P+ Y++ + +
Sbjct: 9 PNLSLPRIVVIGAGFAGLKLARKLK------NKNYQVILLDKNNYHQFQPLFYQVATAGL 62
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I+ + NT F+ + + + T G ++YD+
Sbjct: 63 EPSAISFPLRKVFHNTPNVTFR-----MAEAQRIDQEKNRVFTDIGY--------IDYDY 109
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK----------LSELERRNFGKDSL 244
L+L++GA+ + E + P ++ +A + K +++LE+R SL
Sbjct: 110 LILAMGADTNYFGMKNIMENSIPMKSVSEALFIRNKIISNYERAINIADLEKR----KSL 165
Query: 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKV 303
+ V +VG G +GVELA ++E + + P P N + VL
Sbjct: 166 MNVVIVGGGPTGVELAGAMAE------------LRNKVFPKDYPQLNFDNMKVVLIEMGP 213
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
L+ G ++ E+ S+K + N A + N D L I G E + +
Sbjct: 214 SLLAGMSASSGQKAKEYLESLK---VDVLLNTAVE-NYDG----LNVIINGEEK--LKTN 263
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
+LW G P +E + D G+ +E V I+ALGD L+
Sbjct: 264 TLLWAAGIAP--NGIEG----IVDTQKFKNGRLLVNEYNLVHNSKNIYALGD-LCLQQLP 316
Query: 424 GRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
P P AQVA QQAD N + R FR+++LG M +GR A V F++
Sbjct: 317 DYPKGHPQVAQVAIQQADNLANNFLGQLKGRAPKAFRYKDLGSMATVGRKLAVVDLPFIK 376
>gi|73663143|ref|YP_301924.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|123642122|sp|Q49W80.1|Y1834_STAS1 RecName: Full=NADH dehydrogenase-like protein SSP1834
gi|72495658|dbj|BAE18979.1| putative NADH dehydrogenase FAD-containing subunit [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 402
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 176/407 (43%), Gaps = 62/407 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ ++ +LG G+ GL T +L+ + D+ +V L+++++ L+E +G +
Sbjct: 5 RKKVLVLGAGYAGLQTITKLQKQISADE--AEVTLINKNDYHYEATWLHEASAGTI---- 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ DLL KD+V + + N T G I ++D LV+
Sbjct: 59 ---SYEDLLYPVESVVNKDKVNFVKAEVTKIDRNAKKVETDAG--------IFDFDILVV 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVGCG 253
SLG E + + G ++AF + A ++ R K + D + + V G G
Sbjct: 108 SLGFESETFGIKGMKDYAFQIENVLTARKLSRHIEDKFANYASSKQKDDKDLAIIVGGAG 167
Query: 254 YSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
++GVE +++R+ E K V+ V+ T EAA K+L +LV +
Sbjct: 168 FTGVEFLGELTDRIPELCNKYGVEQSKVKITCV--------EAAPKMLPMFSDELV-NHA 218
Query: 311 VRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
V + G EF+ P +AA N +++++ E Q EA+ V+W
Sbjct: 219 VNYLENKGVEFKIGT--------PIVAA--NEKGFVVKVND-----EEQQLEANTVVWAA 263
Query: 370 GSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRP 426
G + ++L + RG+ T + L ++G+ IF +GD SA + RP
Sbjct: 264 GVR---------GSKLMEESFEGVKRGRIVTKQDLTIEGYDDIFVIGDCSAFIPAGEERP 314
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQ+A QQ + N+ + +P F + + G + LG +D
Sbjct: 315 LPTTAQIATQQGEHTAKNVKNILEGQPTNEFEYVDRGTVCSLGAHDG 361
>gi|397734647|ref|ZP_10501351.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Rhodococcus sp. JVH1]
gi|396929435|gb|EJI96640.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Rhodococcus sp. JVH1]
Length = 462
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 179/428 (41%), Gaps = 74/428 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + R+ I+G GFGGL+ A L VL+VD++ +F+P+LY++ +G +
Sbjct: 9 EARHRVVIIGSGFGGLFAAKALRR------ADVDVLVVDRTSHHLFQPLLYQVATGILSE 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIAP +L V L +D + TH G + EYD L+
Sbjct: 63 GEIAPSTRMVLKKQS----NASVMLGDVTDIDLTARRITSTHQG----RTTTTTEYDSLI 114
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVV 250
+S GA AE A T++DA + R L ER D L+ VV
Sbjct: 115 VSAGARQSYFGNDHFAEHAPGMKTIDDALELRGRILGAFERAELSTDPEERARLLTFVVV 174
Query: 251 GCGYSGVELAATVSERLEEKGIVQAI-NVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G G +GVE+A ++E L + +V A N++T R+A + +L A VL
Sbjct: 175 GAGPTGVEMAGQIAE-LAHRTLVGAYRNIDT----------RDARIVLLDA--ASAVLPP 221
Query: 310 FVRCIRRVGEFEA------SVKQPESGAIPNIAAD----KNSDKYILELQPAIKGLESQI 359
F R+G A V+ A+ ++ AD K+ + ++ A K
Sbjct: 222 FG---DRLGSTAAERLEKIGVEVRLGAAVTDVDADGVTIKDGRGETVRIESACK------ 272
Query: 360 FEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+W+ G + PL + + L+ G+ E L V GHP +F +GD
Sbjct: 273 ------VWSAGVEASPLARQLAEQSG----AELDRAGRIAVHEDLTVPGHPEVFVIGDMM 322
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR----PLLPFRFQNLGEMMILGRNDA 473
A RD LP AQVA Q +A + A R +PF++++ G M + R A
Sbjct: 323 A-RDR----LPGVAQVAIQGGRYAAKQIAAGARGRDSSPDRVPFQYRDKGAMATISRFHA 377
Query: 474 AVSPSFVE 481
V +E
Sbjct: 378 VVKVGGIE 385
>gi|409358527|ref|ZP_11236890.1| NADH dehydrogenase [Dietzia alimentaria 72]
Length = 477
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 199/497 (40%), Gaps = 90/497 (18%)
Query: 63 SEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122
+E E+ T P ++ R+ I+G GFGGL+ A +LE V LV ++ +F
Sbjct: 2 TEPETDQVNATAPAGRRHRVVIIGSGFGGLFAAQQLEK------ADVDVTLVAKTGHHLF 55
Query: 123 KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTV 182
+P+LY++ +G + EIAP +L + K+ +L D + V G +
Sbjct: 56 QPLLYQVATGILSVGEIAPPTRLILRDQ-----KNATVVLGDVDKIDVAAKKVHASAGHI 110
Query: 183 LLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----------- 231
G +EYD LV++ GA +A T++DA + ++
Sbjct: 111 ----GFDLEYDSLVVAAGANQSYFGNDHFERWAPGMKTVDDALELRSRILGCFEQAEVID 166
Query: 232 SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE--KGIVQAIN------VETTIC 283
E ERR L+ +VG G +GVE+A V+E + K + I+ +
Sbjct: 167 DEEERRR-----LLTFIIVGAGPTGVEMAGQVAELAQHTLKDSFRRIDPASARVILLDAA 221
Query: 284 PTGTP--GNR--EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
P P GN+ AA L V++ L V + G VK P+ G++ I
Sbjct: 222 PAVLPPFGNKLGNAARARLEKMGVEIQLNAMVTNVDYHG---IEVKDPD-GSVRRI---- 273
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 399
+A +W+ G K + D ++ G+ +
Sbjct: 274 ---------------------DASCKIWSAGVKA--SSLGKQLAEQTDAEIDRAGRVLVE 310
Query: 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI------NDRP 453
+ L + GHP IF +GD +L + LP AQVA Q +A + A + ++RP
Sbjct: 311 KDLSLPGHPEIFVVGDMMSLDN-----LPGVAQVAIQGGKYAAKQIVAGVEKGKTPSERP 365
Query: 454 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 513
PF++ + G M + R A V +E + LAYLI ++RL
Sbjct: 366 --PFKYFDKGSMATVSRYSAVVKMGRIEISGFIAWVMWLIVHLAYLIGF---KNRLTAMF 420
Query: 514 SWLTKSAIDSVALLQST 530
SW D + L ST
Sbjct: 421 SWGMHMGGDHRSQLTST 437
>gi|334564327|ref|ZP_08517318.1| NADH dehydrogenase [Corynebacterium bovis DSM 20582]
Length = 475
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 185/466 (39%), Gaps = 78/466 (16%)
Query: 73 TWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSG 132
T P + + I+G GFGGL+ A RL D V ++D++ +F+P+LY++ +G
Sbjct: 6 TRPAAGRHHVVIVGAGFGGLFAAKRLA------DADVDVTIIDRTNHHLFQPLLYQVATG 59
Query: 133 EVDAWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
+ EIAP +LAN V+ K V+ + ++ + + GG
Sbjct: 60 ILSEGEIAPSIRQILANQDNVRVVKAEVRGIDITEKV-----VTADLGG-----KDAAFS 109
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFGKD-----SLI 245
YD L+L+ GA AEFA +++DA + +L+ ER D L+
Sbjct: 110 YDSLILAAGAGQSYFGNDHFAEFAPGMKSIDDALEIRARLTGAFERAEITTDPEERRRLM 169
Query: 246 RVAVVGCGYSGVELAATVSERLEE--KGIVQAINVE-----------TTICPTGTPGNRE 292
VVG G +GVELA ++E +G Q IN E + P G R+
Sbjct: 170 TFVVVGAGPTGVELAGQLAEMAHRTLRGEFQNINTEDARILLIDGSPQVLPPMGKKLGRK 229
Query: 293 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 352
AA + L V ++L V + + G +K + +P
Sbjct: 230 AA-RQLQKLGVDIILNSMVTDVNQRGVTYKDMKTEQETFVPAY----------------- 271
Query: 353 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 412
S+I+ A V + PL HV + + G+ + L V H +F
Sbjct: 272 ----SKIWSA-----GVAANPLGRHVAEQAG----VEADRAGRVPVNPDLTVGDHRELFV 318
Query: 413 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND---RPLLPFRFQNLGEMMILG 469
+GD +L +P AQ A Q ++A + A + PF + + G M I+
Sbjct: 319 IGDMMSL-----DRIPGMAQPALQGGEYAARAIIADVEKGSPAEREPFSYFDKGSMAIVS 373
Query: 470 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
R A V E L G IG +L+ L +R +SW
Sbjct: 374 RFSAVVKIGNAE---LSGFIGWVLWLGVHLMTLVGFRNRFVAAMSW 416
>gi|219871782|ref|YP_002476157.1| NADH dehydrogenase [Haemophilus parasuis SH0165]
gi|219691986|gb|ACL33209.1| NADH dehydrogenase [Haemophilus parasuis SH0165]
Length = 427
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 165/370 (44%), Gaps = 48/370 (12%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
++LVD++ ++KP+L+E+ +G +D A + N +F + + + P++ + V
Sbjct: 32 IILVDKNISHLWKPLLHEVAAGSLDDGTDALSYRAHAKNHHFEFRQGTLTQVKPAEKIIV 91
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G ++ E ++ YD LVL++G+ PG AE + E A ++
Sbjct: 92 LAPIYDEAGELLVAERTIV--YDKLVLAIGSRSNDFNTPGVAEHCIFLDSSEQAKVFHKR 149
Query: 231 LSELERR-NFGKDSLIRVAVVGCGYSGVELAATVSERLEE-----KGIVQAINVETTICP 284
+ EL + + + + +AVVG G +G+EL+A + ++ G + +++ T+
Sbjct: 150 MMELFLKFSNNNEKEVHIAVVGGGATGIELSAELYNAVKHLNSYGYGKLDNTSLKVTLLE 209
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
G E L L R V ++ +R +G V + + A+ KY
Sbjct: 210 AG-----ERLLPALPER----VSASAIKELRALG-----VDVLTNTPVIRATAEGLVTKY 255
Query: 345 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP----NNRLHDLPLNARGQAETDE 400
+ F+ADL++W G K P + NR++ + + Q TDE
Sbjct: 256 ------------DENFKADLMVWAAGVKA--PEITKTFGFETNRINQIAIKDTLQTLTDE 301
Query: 401 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 460
++ +GD + L + G+P+P AQ A Q A G N+ A + ++PL F F
Sbjct: 302 N--------VYVIGDCAFLLQADGKPVPPRAQSAHQMATVCGKNILAQLENKPLKAFIFD 353
Query: 461 NLGEMMILGR 470
+ G ++ R
Sbjct: 354 DKGSLISFSR 363
>gi|323488631|ref|ZP_08093873.1| NADH dehydrogenase, FAD-containing subunit [Planococcus donghaensis
MPA1U2]
gi|323397649|gb|EGA90453.1| NADH dehydrogenase, FAD-containing subunit [Planococcus donghaensis
MPA1U2]
Length = 404
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 176/407 (43%), Gaps = 59/407 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P I +LG G+GGL T + L+ ++ D + L++++E L+E +G +
Sbjct: 2 KRPSILVLGAGYGGLTTVVNLQKVLGTD--AADITLINKNEYHYESTWLHEAAAGTLLPE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ D++ + V+F + V + + V G T G YD++V+
Sbjct: 60 QVRYDIKDVIDSVKVKFVQATV------EAIDVVGKKVTTDNGEFT--------YDYIVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG E + + G ++A + ++ A R R+ E + + DS + + V G
Sbjct: 106 ALGFEGETFGIEGLDKYALSIANVK-AARYIREHIEFQFATWSAEPVKDDSRLTIIVGGA 164
Query: 253 GYSGVELAATVSERLEEKGIVQAINVET----TICPTGTPGNREAALKVLSARKVQLVLG 308
G++G+E ++ R+ E + + +V +C EAA VL +LV
Sbjct: 165 GFTGIEFLGELANRVPE--LCKEYDVPREKVRVVCV-------EAAPMVLPGFDPELV-N 214
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
Y V + G E S+ P A P K D+ E + +A V+W
Sbjct: 215 YAVGHLESKG-IEFSIGTPVVEATPEGVKIKKGDE------------EFEFIKAGTVVWA 261
Query: 369 VGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRP 426
G + N + P+ N R + + ++ L G+ +F LGD + + + + RP
Sbjct: 262 AGIRG--------NKLIEATPIENMRARVKVEKDLRAPGYDDVFILGDCALMINEETNRP 313
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
P TAQ+A QQ + NL A +++ + F G + LG +DA
Sbjct: 314 YPPTAQIAMQQGEVVAKNLKALMSNETTVEFVPDLKGTVCSLGEDDA 360
>gi|385677988|ref|ZP_10051916.1| NADH dehydrogenase [Amycolatopsis sp. ATCC 39116]
Length = 429
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/461 (25%), Positives = 191/461 (41%), Gaps = 78/461 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGGF G ++A R D +++LV++++ F++ P+L E+ + +D +
Sbjct: 4 RIVIVGGGFAG-FSAARALLKTLPPDSGTEIVLVNRTDYFLYLPLLPEVAAAVIDPRRVT 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH-LGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L G++ V L D L P + G +EYD L++++
Sbjct: 63 VSLPAALP--GIRLALGEVTALALDDRKLTYVDPEGTSRG----------LEYDRLIIAV 110
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA-----VVGCG 253
G+ KL +PG AE A F ++ +A + D + ++E D R A VVG G
Sbjct: 111 GSVNKLLPIPGIAEHAHGFRSVSEALFLRDHVIRQVELAAAADDPAERDARCTFVVVGAG 170
Query: 254 YSGVELA--------ATVSERLEEKGIVQA---INVETTICPTGTPGNREAALKVLSARK 302
Y+G E+A A E G +++ + P AA +VL R
Sbjct: 171 YTGTEVAAQGPLFTSAIARHHRELDGQRMRWLLLDLAPKVLPELDRRLSRAADRVLRRRG 230
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+++ E SVK+ +D +L
Sbjct: 231 VEIMT-------------ETSVKE------------ATTDGVLLT--------TGDFVPT 257
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
+ W VG +P P VE RG+ + TL V GHP +FA GD++A+ D
Sbjct: 258 RTLAWCVGVRP-DPLVESAGV------ATQRGRLCVEPTLVVPGHPDVFACGDAAAVPDL 310
Query: 423 S--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
+ G TAQ A +Q AG N+ A + + ++ +LG ++ LG AA +P V
Sbjct: 311 TRPGEVTAMTAQHATRQGTLAGLNVAATLGYGEVRQYKHHDLGFVVDLGGAQAAANPLHV 370
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
L G + + +L+ +P + R++ V W + I
Sbjct: 371 P---LSGLPAKAVTRGYHLMAMPGN--RIRTAVDWALDATI 406
>gi|373460111|ref|ZP_09551868.1| hypothetical protein HMPREF9944_00132 [Prevotella maculosa OT 289]
gi|371956597|gb|EHO74381.1| hypothetical protein HMPREF9944_00132 [Prevotella maculosa OT 289]
Length = 424
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 153/383 (39%), Gaps = 58/383 (15%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
D QV+LVD++ F P++Y++ S ++ IA F L N FF+ +
Sbjct: 31 DTDYQVVLVDKNNYNQFPPLIYQVASAGLEPSNIAFPFRRLFQNRKNFFFR-----MAEV 85
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ T GT+ YD LVL+ GA A T+ +A
Sbjct: 86 QRIDTEEKAILTSIGTI--------HYDDLVLAAGATTNFFGNKNIEASALSMKTVGEAM 137
Query: 226 RV-DRKLSELERRNFGKDS-----LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279
R+ + L LER D L+ +A+VG G SGVE+A ++E +
Sbjct: 138 RLRNTILQNLERAETEDDEVKRQRLLTIAIVGGGPSGVEIAGALAE------------MR 185
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRC-IRRVGEFEASVKQPESGAIPNIAAD 338
TI P P L+A ++ + Y + R +G + A+ + +
Sbjct: 186 RTIIPRDYPD--------LNASEMHI---YLINAGPRLLGAMDEKSSHKAEKALKELGVE 234
Query: 339 KNSDKYILELQPAIKGLESQIF-EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 397
+D + + Q LE F A+ V+W G K NR+ +P+ + G
Sbjct: 235 IIADCRVTDYQNHSLILEDGDFIHAETVIWVSGIKA---------NRIEGIPVESIGHGG 285
Query: 398 ---TDETLCVKGHPRIFALGDSSALRDSSGRPL--PATAQVAFQQADFAGWNLWAAINDR 452
TD VKG ++A+GD + P P AQVA QQA NL AA R
Sbjct: 286 RILTDSFNRVKGMTNVYAIGDQCLVEGDEAYPQGHPQLAQVALQQAANVARNLIAAGRGR 345
Query: 453 PLLPFRFQNLGEMMILGRNDAAV 475
PF ++N G M +GR A V
Sbjct: 346 SARPFVYRNPGTMATIGRKKAVV 368
>gi|398380303|ref|ZP_10538421.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. AP16]
gi|397721619|gb|EJK82167.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. AP16]
Length = 425
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 179/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCP- 164
++ L+D+ +F+P+LY+ LL+ AW I FF+DR ++
Sbjct: 33 RITLIDRRNHHLFQPLLYQVATTLLATSEIAWPIR------------NFFRDRPEVTTLL 80
Query: 165 SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEF 214
++ GV+ + TV L++G + YD LVL+ GA EP V PG
Sbjct: 81 AEVAGVD-----SQAHTVTLKNGNTIGYDTLVLATGATHAYFGHDEWEP---VAPG---- 128
Query: 215 AFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLE 268
TLEDA + R++ +ELE+ +D+L+ +VG G +GVELA ++E
Sbjct: 129 ---LKTLEDATTIRRRVLLAFEQAELEKDPAIRDALLTFTIVGAGPTGVELAGIIAELAR 185
Query: 269 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 328
+ + N++T+ AR + + G R + F +
Sbjct: 186 KTLPKEFRNIDTS-----------------KARIILVEAGP-----RVLASFVEELSDYA 223
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + + K + + ++W G + P + D+
Sbjct: 224 QKALEKLGVEIHLGKPVTSCTAEGVTIGDTFVPCRTIVWAAGVQ------ASPAAKWLDV 277
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P + G+ D+ L G P IF +GD++A+ G P+P A A QQ + + A
Sbjct: 278 PADRAGRVVVDKELHAPGQPDIFVIGDTAAVTREDGSPVPGIAPAAKQQGAYVAKVIRAK 337
Query: 449 INDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
+ +P PF +++ G + +G++ A + ++ L G + LA++ L
Sbjct: 338 LAGQPAPGPFHYRHQGSLATIGKSAAIIDFGRIK---LKGWLAWWVWGLAHIYFLIGTRW 394
Query: 508 RLKVGVSWL 516
R+ V SWL
Sbjct: 395 RIAVAWSWL 403
>gi|398784726|ref|ZP_10547906.1| NADH dehydrogenase [Streptomyces auratus AGR0001]
gi|396995032|gb|EJJ06055.1| NADH dehydrogenase [Streptomyces auratus AGR0001]
Length = 459
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/465 (24%), Positives = 189/465 (40%), Gaps = 79/465 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
RI ++GGG+ G+YTALRL+ + Q+ ++ +V+++D ++P L E +G +
Sbjct: 8 RILVVGGGYVGMYTALRLQRKLKQELQQGTVEVIVIDPDPYMTYQPFLPEAAAGSISPRH 67
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ +L+ V V + SD +A G +E V YD LVL+
Sbjct: 68 VVVPLRRVLSQCKVVI--GEVTAIDHSDRRATITTLAAEETGNGAIE----VVYDELVLA 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVAV-----VGC 252
G+ + VPG AEF F T+E+A + + L +L+ + +D +R A VG
Sbjct: 122 PGSVSRTLPVPGLAEFGIGFKTVEEAIGLRNHVLGQLDIASSTRDPAVRDAALTFVFVGG 181
Query: 253 GYSGVELAATVSERLEEKGI----------VQAINVETT--ICPTGTPGNREAALKVLSA 300
GY+GVE A + E + + ++ I VE T I P P A++ L A
Sbjct: 182 GYAGVEALAEL-EDMARYAVRYYHNIKPEDMKWILVEATGRILPEVGPEMGRYAVRELRA 240
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R + VR R+ E V G+ F
Sbjct: 241 RNID------VRLETRLESCEKRVAVLSDGS---------------------------RF 267
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
++WT G KP P LPL A G+ + L V G ++ GD++A+
Sbjct: 268 PTRTLVWTAGVKP------HPILAATKLPLAAHGRLQCTPALQVDGVEHAWSAGDAAAVP 321
Query: 421 DSSGRPLPA----------TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
D + P AQ A +QA N+ +A+ P++ +R + G + LG
Sbjct: 322 DLTAEPPADPDAPRPMCAPNAQHALRQAKVLAENIASAVRGGPIVDYRHKYAGSVASLGL 381
Query: 471 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ + + G L G + +L R+PT + +V W
Sbjct: 382 HKGV---AHIYGRKLKGYPAWFMHRAYHLSRVPTFNRKARVLAEW 423
>gi|329115682|ref|ZP_08244404.1| NADH dehydrogenase [Acetobacter pomorum DM001]
gi|326695110|gb|EGE46829.1| NADH dehydrogenase [Acetobacter pomorum DM001]
Length = 430
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 157/393 (39%), Gaps = 33/393 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I I+GGG GL A RL + + K ++ L+D+S V+KPML+ +G V
Sbjct: 4 KSEILIVGGGVAGLALATRLGKTLGRHGKA-RITLIDKSFSHVWKPMLHCFAAGTVQNEN 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F ++ +F+ V + V P+ + G VL + YD +VLS
Sbjct: 63 DRISFMAQASSHNFEFWPGEVVSIDRDKREVVLSPLHASDGSKVL--DSRTMTYDAIVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
+G+ PG E L +A + K ++F +S + +A+VG G +G +
Sbjct: 121 IGSRANDFGTPGVLENCLFIDNLVEANAFNEKFRMEILKSFADNSELDIAIVGGGATGTQ 180
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
LAA + + LE IV + +L +L + R +
Sbjct: 181 LAAELHKSLE---IVDPV-----------------SLHAFGKAPPKLSITLLQSGARILP 220
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF-EADLVLWTVGSKPLLPH 377
F SV + I + + + L+ A L +W G K P
Sbjct: 221 AFPESVSMAAQQELERIGVNVRTSARVAAADATGFTLKDGTHVPATLRVWAAGVKA--PA 278
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
V L L+ GQ LC RIFA+GD S + D PLPATAQVA QQ
Sbjct: 279 V---TKTYGGLSLSRSGQINVKSNLCSVDDDRIFAMGDCSYIVDD---PLPATAQVARQQ 332
Query: 438 ADFAGWNLWAAINDRPLLP-FRFQNLGEMMILG 469
A +L A + +P F N G ++ LG
Sbjct: 333 AHHLAQHLPAWLESGKEVPSCIFHNKGAIVALG 365
>gi|381191299|ref|ZP_09898809.1| NADH dehydrogenase (ubiquinone) [Thermus sp. RL]
gi|380450659|gb|EIA38273.1| NADH dehydrogenase (ubiquinone) [Thermus sp. RL]
Length = 395
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 157/363 (43%), Gaps = 55/363 (15%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++ IA L+ V + R L
Sbjct: 32 LLVDARNHHLFQPLLYQVATGFLEGPAIAYPLRALVRRGRVLLARARAVDL--------- 82
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231
G +LLE G ++ Y LV++ G+ P VPG E A TL A RV +L
Sbjct: 83 ------EGRRLLLEDGDVLPYRHLVVATGSLPSDLGVPGVGERALLLKTLGQALRVRHRL 136
Query: 232 SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR 291
R + + + + VVG G +GVEL+ ++E L P P
Sbjct: 137 LMALERAAREGAPLSLVVVGGGPTGVELSGALAEFLRYA------------LPRDFPEIP 184
Query: 292 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP- 350
EA + +L A R + F ++ + A+ ++ + + ++
Sbjct: 185 EARVVLLEA------------GPRLLPAFRPALSRYAERALAHLGVEVRLGAQVAAVEER 232
Query: 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 410
++ + DL+LW VG + N L LP +ARG+ TD L + GHP +
Sbjct: 233 GVRLASGEGLVGDLILWAVGVR---------GNPLPGLPADARGRVPTDPYLRLPGHPEV 283
Query: 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
+ +GD + L P A VA QQ +A NL A+ + LPFR+++ G++ ++GR
Sbjct: 284 YVVGDLNGL------GFPQLAPVALQQGAWAAGNLLRALRGQDPLPFRYRDRGQLAVIGR 337
Query: 471 NDA 473
N A
Sbjct: 338 NRA 340
>gi|403744059|ref|ZP_10953504.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Alicyclobacillus hesperidum URH17-3-68]
gi|403122276|gb|EJY56500.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Alicyclobacillus hesperidum URH17-3-68]
Length = 394
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 150/371 (40%), Gaps = 69/371 (18%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
L+++ FK +L+E+ G DA A D+L KD V+ L
Sbjct: 30 LINKHSYHYFKTLLHEVAGGRHDAQTYAIDLRDVLHRDTSVIVKDVVRELD--------- 80
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL- 231
H V E+G EYD LV++LG++ +PG AF +L A + +
Sbjct: 81 ----LHKNMVWTEAGY-YEYDKLVVALGSQTATFGIPGLTSHAFVLDSLATAKSIREHIE 135
Query: 232 -SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQA-----------INVE 279
S L G + +++ V G G +GVEL +++ K ++Q ++
Sbjct: 136 ASFLRYGRTGDPNDLKIVVAGGGLTGVELMGELAD-FAPKLLLQHQLSADDFQLTLVHAH 194
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
I P R+ A++ L R V+LVL RV I A+
Sbjct: 195 DEILPNVHRDLRQIAMQKLQERGVRLVLN------ERV-----------------IGANA 231
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-NRLHDLPLNARGQAET 398
N L + K L + F +WT G VE P+ R LP++ R + E
Sbjct: 232 NE-----VLLASGKSLHAHTF-----IWTGG-------VEAPSLLRQSGLPIDDRNRIEV 274
Query: 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
D L V+GHP +FA+GDS+ G LP T QVA Q N+ ++ + F
Sbjct: 275 DSYLQVQGHPDVFAIGDSARFTTKDGEVLPPTGQVAEQMGKHVADNIIRFCHNDTMDEFV 334
Query: 459 FQNLGEMMILG 469
+ + G + LG
Sbjct: 335 YHDHGMVASLG 345
>gi|289551229|ref|YP_003472133.1| NADH dehydrogenase [Staphylococcus lugdunensis HKU09-01]
gi|315658732|ref|ZP_07911601.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
lugdunensis M23590]
gi|385784846|ref|YP_005761019.1| putative pyridine nucleotide-disulfide oxidoreductase
[Staphylococcus lugdunensis N920143]
gi|418414525|ref|ZP_12987740.1| NADH dehydrogenase-like protein [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180761|gb|ADC88006.1| NADH dehydrogenase [Staphylococcus lugdunensis HKU09-01]
gi|315496187|gb|EFU84513.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
lugdunensis M23590]
gi|339895102|emb|CCB54416.1| putative pyridine nucleotide-disulphide oxidoreductase
[Staphylococcus lugdunensis N920143]
gi|410877132|gb|EKS25029.1| NADH dehydrogenase-like protein [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 402
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/409 (23%), Positives = 177/409 (43%), Gaps = 62/409 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++ +I +LG G+ GL T +L+ V ++ ++ LV++++ L+E +G +
Sbjct: 3 QERKKILVLGAGYAGLQTVTKLQKHVSAEE--AEITLVNKNKYHYESTWLHEASAGTIS- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DL+ KD+V + + N T G I YD L
Sbjct: 60 ------YEDLIYPVESVLKKDKVNFVNAEVTKIDRNAKKVETDSG--------IFNYDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG E + + G ++AF ++ A + R + E + N+ D+ + + V
Sbjct: 106 VVALGFETETFGINGMKDYAFQIENVDTARHLSRHI-EDKFANYAASKEKNDNDLAILVG 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETT--ICPTGTPGNREAALKVLSARKVQLVLG 308
G G++G+E +++R+ E +N E C EAA K+L +LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCNKYGVNQEKVRITCV-------EAAPKMLPMFSDELV-N 216
Query: 309 YFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y V+ + G EF+ A P +A N +++++ + Q EA +W
Sbjct: 217 YAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVKIND-----QEQQLEAGTSVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSG 424
G + ++L + RG+ + L ++GH IF +GD SA +
Sbjct: 262 AAGVR---------GSQLMEASFEGVKRGRIVNKQDLTIEGHDDIFVIGDVSAFIPAGEE 312
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ + N+ +N + F + + G + LG +D
Sbjct: 313 RPLPTTAQIAMQQGEHVAKNIKHILNGEATVDFEYVDRGTVCSLGSHDG 361
>gi|395771633|ref|ZP_10452148.1| transmembrane NADH dehydrogenase [Streptomyces acidiscabies 84-104]
Length = 450
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 124/465 (26%), Positives = 199/465 (42%), Gaps = 87/465 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G A +L + ++ +++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRILIVGAGFAGYRAARQLAR---AARGRAEITVLNPTDHFLYLPLLPQVATGVLEPRR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVN--GPMACTHGGTVLLESGLIVEYDWL 195
+A L + + + DRV L DH V+ GP GGT L YD L
Sbjct: 60 VAVSLPGTLRDVRIVLGEADRVDL----DHRAVHYRGP----EGGTGSLP------YDRL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA--VVGC 252
VL++G+ KL VPG E+A F L +A + D ++E D R VVG
Sbjct: 106 VLAVGSVNKLLPVPGVTEYAHGFRGLPEALYLRDHITRQMELAATEDDPAARCTFVVVGA 165
Query: 253 GYSGVELAAT-------------VSERLEEKGIVQAINVETTICPTGTPGNREAALKVLS 299
GY+G E+AA E L + ++ ++ I P A +VL
Sbjct: 166 GYTGTEVAAQGRLFTDALQRTRPRHEALTTRWLL--LDTAPRILPELDERLSRTATRVLG 223
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
R V++ G V+ R+ D +L + +
Sbjct: 224 ERGVEVRTGTSVKEARK-------------------------DGVLLT--------DGES 250
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
++W VG +P +P L LPL RG+ + TL V G P +FA GD +A+
Sbjct: 251 VPTRTLVWCVGVRP-----DPLAESL-GLPLE-RGRILVEPTLQVPGRPEVFACGDVAAV 303
Query: 420 RDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
D+ G TAQ A++Q N+ A++ R P+ ++LG ++ LG +AA P
Sbjct: 304 PDTDRPGEFTAMTAQHAWRQGKLVAENVAASLTGRAQRPYHHKDLGFVVDLGGGEAAADP 363
Query: 478 SFVEGVTLDG-PIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
G+ L G P G R +L LP + R++V WL + +
Sbjct: 364 L---GLPLSGLPAGLVTRGY-HLAALPGN--RVRVAADWLLDAVL 402
>gi|380503657|emb|CAE51197.2| NADH dehydrogenase [Thermus thermophilus HB8]
Length = 395
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 157/363 (43%), Gaps = 55/363 (15%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++ IA L+ V + R L
Sbjct: 32 LLVDARNHHLFQPLLYQVATGFLEGPAIAYPLRALVRRGRVLLARARAVDL--------- 82
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231
G +LLE G ++ Y LV++ G+ P VPG E A TL A RV +L
Sbjct: 83 ------EGRRLLLEDGDVLPYRHLVVATGSLPSDLGVPGVGERALLLKTLGQALRVRHRL 136
Query: 232 SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNR 291
R + + + + VVG G +GVEL+ ++E L P P
Sbjct: 137 LMALERAAREGAPLSLVVVGGGPTGVELSGALAEFLRYA------------LPRDFPEIP 184
Query: 292 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP- 350
EA + +L A R + F ++ + A+ ++ + + ++
Sbjct: 185 EARVVLLEA------------GPRLLPAFRPALSRYAERALAHLGVEVRLGAQVAAVEER 232
Query: 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 410
++ + DL+LW VG + N L LP +ARG+ TD L + GHP +
Sbjct: 233 GVRLASGEGLVGDLILWAVGVR---------GNPLPGLPADARGRVPTDPYLRLPGHPEV 283
Query: 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
+ +GD + L P A VA QQ +A NL A+ + LPFR+++ G++ ++GR
Sbjct: 284 YVVGDLNGL------GFPQLAPVALQQGAWAAGNLLRALRGQDPLPFRYRDRGQLAVIGR 337
Query: 471 NDA 473
N A
Sbjct: 338 NRA 340
>gi|422295211|gb|EKU22510.1| NADH dehydrogenase [Nannochloropsis gaditana CCMP526]
Length = 333
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 125/260 (48%), Gaps = 36/260 (13%)
Query: 80 PRIC--ILGGGFGGLYTALRLESLVWQDDKKP---QVLLVDQSERFVFKPMLYELLSGEV 134
P IC I GLY+ALRL L P + LVD+ +RFVF P+LYEL G+
Sbjct: 67 PSICMSIESSSSKGLYSALRLSELSRPSRYAPPSIDITLVDRHDRFVFLPLLYELAMGDA 126
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL------ 188
+ E+APRF LLA+TG++F + V+ + D G + T + ES +
Sbjct: 127 NEEEVAPRFESLLASTGIRFVQGEVEAI---DLAGKCVQVQSQGEATEVSESAVEAPSSG 183
Query: 189 ---IVEYDWLVLSLGAEPKLDVVPGAAEF-------------AFPFSTLEDACRVDRKLS 232
+ YD LVL+LG+EP L P AA PF TL DA + R+L
Sbjct: 184 SSKSLAYDKLVLALGSEPML---PPAASLPLSEGSLSPSPSSVMPFYTLRDAHALRRQLM 240
Query: 233 ELERRNFGKDSLIRVAVVGCGYSGVELAATVSERL-EEKGIVQAINVETTICPTGTPGNR 291
++ +L R VVG GYSGVELAA ++ RL +KG V + I R
Sbjct: 241 RID--ALSSPTLFRTVVVGGGYSGVELAANLATRLGRDKGRVTLVERGYQILGNSPMPVR 298
Query: 292 EAALKVLSARKVQLVLGYFV 311
+A K L V+++LG V
Sbjct: 299 ASAGKRLEEEGVEVMLGVDV 318
>gi|421077121|ref|ZP_15538092.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans JBW45]
gi|392524509|gb|EIW47664.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans JBW45]
Length = 420
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 188/451 (41%), Gaps = 68/451 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P I I+G GFGG+ TA L + ++ L+D+ +F+P+LY++ + +
Sbjct: 8 KPPHIVIIGAGFGGIRTARALAK------HEVKITLIDKYNYHLFQPLLYQVATAGLSVD 61
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA P A V F +L SD + + + + G + YD+LV
Sbjct: 62 DIAYPVRAIFRDQKNVDF-----RLAEVSD-VDFDNKVVTMNTGEI--------GYDYLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR------KLSELERRNFGKDSLIRVAVV 250
++ G + + F TL+++ + +L+ E+ + +L+ +V
Sbjct: 108 IAAGGSTNYFGMESMEKNGFGMKTLDESVMIRNHVLRMFELAAHEKDADKRRALLTFVIV 167
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINV---ETTICPTGTPGNREAALKVLSARKVQLVL 307
G G +GVE A +SE + + + N+ E I EA+ K+ + +L
Sbjct: 168 GGGPTGVESAGALSELIYHVMVKEYHNMNFKEVRIMLV------EASDKLFATMPKELRD 221
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
IR+ E V+ D N +K ++KG ++ V+W
Sbjct: 222 ATVETLIRKHVEVRLCVQ----------VTDYNGEKM------SLKG--GEVIPTYTVVW 263
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLN--ARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
G K N+ L L + + +A +E L + P +F +GDS+ R
Sbjct: 264 AAGVKA--------NSLLDTLKVEQASMRRAIVNEFLQLPNRPEVFVIGDSAQFIQGE-R 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
PLP A VA QQA+ A N+ + I + L F ++++G M +GRN A V
Sbjct: 315 PLPMVAPVAIQQAEVAAKNIRSLIRGKELKKFTYRDVGNMATIGRNAAVVHMG---NFKT 371
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G I + +++RL +R V V W+
Sbjct: 372 HGFIAWAIWSFVHILRLIDFRNRAVVFVKWM 402
>gi|126651101|ref|ZP_01723312.1| YjlD [Bacillus sp. B14905]
gi|126592302|gb|EAZ86351.1| YjlD [Bacillus sp. B14905]
Length = 394
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 165/401 (41%), Gaps = 51/401 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+ G+ TAL + D+ K + +V+Q L+ L G + +A
Sbjct: 4 EIVILGAGYAGVLTALTARKYLSADEAK--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V + V L++G + YD LV+SLG
Sbjct: 62 LPLKKIFKGLDIDLHIAKVTKFNVDNK-------------KVDLDNGYTLTYDTLVVSLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIRVAVVGCG-YSGVE 258
++ +PG E + ++ DA ++++ + + ++ KD V+G G +GVE
Sbjct: 109 SQTGFFGIPGLEENSMVLKSVNDANKINKHIEDRIKAYAQSKDEADATIVIGGGGLTGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
L + + + +N EA K+L L+ +R
Sbjct: 169 LVGEIVDNFPKIAAKHGVNFADLKIKL-----VEAGPKILPVLPDTLIQRATESLTKRGV 223
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
EF P +G N+ + K+ + I A+ ++WT G PL P V
Sbjct: 224 EFITGT--PVTGVDGNVISLKDREPII----------------ANTLVWTGGVAPL-PLV 264
Query: 379 EPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA-TAQVAF 435
L A RG+A +E L H +F +GD+S AL GRPL A TAQVA+
Sbjct: 265 GESG-------LAADRGKATINEFLQSTSHEDVFVIGDASVALPADGGRPLYAPTAQVAW 317
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
Q + AG+N++A ++ + F N G + LGR DA +
Sbjct: 318 QMGELAGYNVFAQYKNQEMKTFSAVNSGTLASLGRKDAVAT 358
>gi|402570158|ref|YP_006619502.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
gi|402251355|gb|AFQ51808.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
Length = 452
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 174/411 (42%), Gaps = 57/411 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL V + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTVGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G +L + L +YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARTATIAAVQDADGTEILPQRAL--DYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFGKDSLIRVAV 249
++G+ VPGAA A P L+ A RK + E++ + + I + V
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHQAEQQPARRAAPICINV 191
Query: 250 VGCGYSGVELAATVSERLEE------KGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
+G G +GVELAA + +++ K +V A +V + E ++L A
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLI--------EGGPRILPA--- 240
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEA 362
+ + + + D +D + E+ A+ + +
Sbjct: 241 ----------------LDERLSTKMHAQLRTLNVDVLTDTRVAEVGADAVTTATGEPLAS 284
Query: 363 DLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL- 419
D+ +W G V P L D+ LN Q +TL P ++A GD +A
Sbjct: 285 DITIWAAG-------VAGPAILRELGDIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACP 337
Query: 420 -RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
D+SG LP AQVA QQA + G L + +P+ F F++ G ++ LG
Sbjct: 338 SADASG-ILPPRAQVAHQQAVYLGEALARRLAGKPVAGFTFRDAGTVVSLG 387
>gi|365162960|ref|ZP_09359083.1| NADH dehydrogenase-like protein yjlD [Bacillus sp. 7_6_55CFAA_CT2]
gi|363617245|gb|EHL68644.1| NADH dehydrogenase-like protein yjlD [Bacillus sp. 7_6_55CFAA_CT2]
Length = 392
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 164/412 (39%), Gaps = 75/412 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ + L G + YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSK-------EIKLADGTTLSYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
++ +PG E + + DA + V+ ++ E + D+ I + G G +G
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIG--GGGLTG 166
Query: 257 VELAATVSERLEEKGIVQAIN--------VET--TICPTGTPGNREAALKVLSARKVQLV 306
VEL +++ + + +N VE I P E A L AR V +
Sbjct: 167 VELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFL 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + N+A ++ ++L+ + Q A+ +
Sbjct: 227 TGL---------------------PVTNVAGNE------IDLK------DGQKLVANTFV 253
Query: 367 WTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
WT G PL+ L +N RG+A D L H +F GDS+ + G
Sbjct: 254 WTGGVQGNPLIGE--------SGLEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFAPDG 304
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ+A+Q + G+NL+AA+ + F N G + LGR DA +
Sbjct: 305 RPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|354604988|ref|ZP_09022977.1| hypothetical protein HMPREF9450_01892 [Alistipes indistinctus YIT
12060]
gi|353347567|gb|EHB91843.1| hypothetical protein HMPREF9450_01892 [Alistipes indistinctus YIT
12060]
Length = 430
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 180/418 (43%), Gaps = 67/418 (16%)
Query: 70 QTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
+T P ++ R+ ++GGGF GL +L QV+LVDQ+ +FKP+LY++
Sbjct: 2 KTLNIPQTEQKRVVVVGGGFAGLTLVQKLRK------SNYQVVLVDQNNFHLFKPLLYQV 55
Query: 130 LSGEVDAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
S +D +IA F + V F R+ + P ++L L S
Sbjct: 56 ASAGLDESDIAFPFRRVFQTRRNVNFRLGRMLRVKPEENL--------------LETSTG 101
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFG-----KD 242
V YD+LV++ G P + + ++P S + DA R+ + L LE+ ++
Sbjct: 102 SVTYDYLVIATGCVPNFFGMDHIEQRSWPMSDIGDALRIRNSVLRNLEKAVIATSEEERN 161
Query: 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
+L+ + +VG G SGVE+A ++E + + I P PG +++ +
Sbjct: 162 ALLNIVIVGGGASGVEIAGALAE------------MRSYIVPRDYPGVNISSMHIYLVEG 209
Query: 303 VQLVLGYF-----VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
+L C++ +++ + N A D + I G +
Sbjct: 210 RDKLLATMSPETSSDCLK-------VLEKKGVNVMLNTAVKDYQDNRV------IFGDGT 256
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
I +L+ WT G K VE N + RG+ TD V+G IFA+GD
Sbjct: 257 SILSGNLI-WTSGVKS--EAVEGIGNSEKE----RRGRILTDRYNRVQGFDNIFAIGD-I 308
Query: 418 ALRDSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A+ D P P A+VA Q + NL A +P+ P+ ++++G + +GRN A
Sbjct: 309 AITDDPQYPAGYPQLARVAISQGERIAANLIAVSKGKPMEPYEYRSIGVLATVGRNRA 366
>gi|315506302|ref|YP_004085189.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Micromonospora sp. L5]
gi|315412921|gb|ADU11038.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Micromonospora sp. L5]
Length = 432
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/458 (25%), Positives = 197/458 (43%), Gaps = 83/458 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ +G V+
Sbjct: 3 KPRVVIVGAGFAGYHAAKTLRRLA---RDRAEIVLLNTTDYFLYLPLLPEVAAGVVEPTR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
IA A L V + DRV L + V G HG + YD LV
Sbjct: 60 IAVPLAGTLDGVRVVIGEADRVDLQNRWVGYRSVEG----DHGQ---------LAYDRLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRK--LSELERRNFGKDSLIRVAVV 250
LS+G+ KL +PG E+A F L +A V R+ L+EL + + + VV
Sbjct: 107 LSVGSVNKLLPIPGVTEYAHGFRGLPEALFLHDHVVRQVELAELTQDPAEQRARTTFVVV 166
Query: 251 GCGYSGVELAAT--------VSER--LEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
G GY+G E+AA +++R L+ + ++V + P A +VL
Sbjct: 167 GAGYTGTEVAAHGQLFTDRLMAQRPHLKVRPRWMLLDVAPRVLPELDRRMSVTADRVLRK 226
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V + +G V A+ D +L + +
Sbjct: 227 RGVDVRMGTSV-------------------------AEATPDGVMLT--------DGEYV 253
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSAL 419
++W VG + P+ + +L L +G+ DE L V G+P +FA GD++A+
Sbjct: 254 PTCSLVWCVGVR--------PDPFVAELGLRTEKGRLVVDEFLNVPGYPEVFACGDAAAV 305
Query: 420 RDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
D + G+ TAQ A +Q A N+ A+ ++ +LG ++ LG DAA +P
Sbjct: 306 PDPTRPGQVCAMTAQHAQRQGKLAAHNIAASYGQGVRKSYKHHDLGWVVDLGGKDAAANP 365
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V L G + + +L+ +P + R +V W
Sbjct: 366 L---KVPLAGLPAKAVTRGYHLLAMPGN--RPRVAADW 398
>gi|380302250|ref|ZP_09851943.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium
squillarum M-6-3]
Length = 458
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 193/483 (39%), Gaps = 82/483 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILGGG GL TA L + + + +VD ++P L E+ +G +D
Sbjct: 8 KPHVLILGGGAVGLTTASELRKTLGSE---VAITVVDPRPYMTYQPFLPEVGAGNIDPRN 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ L TG + V + D+ V T +S + + YD+LV+
Sbjct: 65 VLAPLRKAL--TGTKVVTGSVSAIRSEDNTVVV---------TTEDDSQIEIAYDYLVVG 113
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGC 252
LG+ P+L +PG AE A F +E+A V DR L+ L KD +R +G
Sbjct: 114 LGSVPRLLPIPGLAENAIGFKWVEEAIAVRDRILANLAEAATTKDPKVRKRLLTFTFIGG 173
Query: 253 GYSGVELAA----TVSERLEEKGIVQA-------INVETTICPTGTPGNREAALKVLSAR 301
G++G E A V + L + A I+ + P T R L L R
Sbjct: 174 GFAGGEAIAEAEDMVRDALRYYPDLHASDVRFVLIDAAPFVFPELTEEQRAYVLNQLRER 233
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
+++ L F + E+G I K SD FE
Sbjct: 234 GIEVKLETF-------------LNSAENGLI------KTSD--------------GDEFE 260
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-----GQAETDETLCVKGHP----RIFA 412
DL++W G KP ++ N+ DLP+ G+ + L V G +FA
Sbjct: 261 TDLLVWNAGVKPNPLLMDEENS---DLPVVTERGPLMGKLDVLADLRVNGAEGPIDNVFA 317
Query: 413 LGDSSALRD---SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
GD +A+ D G+ P AQ A +Q NL A+ RPL+ + +NLG M LG
Sbjct: 318 AGDCAAVPDLASGEGKFCPPNAQHAVRQGKRIADNLARAVQGRPLVDYYHKNLGVMATLG 377
Query: 470 RNDAAVSPSFVEG-VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK--SAIDSVAL 526
+ V + G +A + ++ +PT ++ V W++ S D + +
Sbjct: 378 MYKGVARLMLGDKEVDVRGLPAWAAARAYHVYAMPTVGRKVAVIADWVSNLVSRRDIIGI 437
Query: 527 LQS 529
QS
Sbjct: 438 PQS 440
>gi|399020445|ref|ZP_10722575.1| NADH dehydrogenase, FAD-containing subunit [Herbaspirillum sp.
CF444]
gi|398094860|gb|EJL85214.1| NADH dehydrogenase, FAD-containing subunit [Herbaspirillum sp.
CF444]
Length = 428
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 167/407 (41%), Gaps = 63/407 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL A L K + ++D+S +F+P+LY++ + + A I
Sbjct: 2 PHVIIVGCGFGGLAAARALAD------AKVDITIIDRSNHHLFQPLLYQVATAGLSAPAI 55
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ +LA ++ L+ + V T+ LE G + YD+L+++
Sbjct: 56 SAPIRSILATQ-----RNLTSLMAAVSKIDVTRK-------TIALEDGSEIAYDYLIVAA 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRV-----AVVGCG 253
G+ A A TL DA + R+ L ER D + R V+G G
Sbjct: 104 GSTHSYFGHDEWAPLAPGLKTLADAFDIRRRILMAFERAEREADPVRRAEWLTFTVIGAG 163
Query: 254 YSGVELAATVSE--RLEEKGIVQAINVETT--ICPTGTPGNREAALKVLS--ARKVQLVL 307
+GVE+A T+ E R +G + I+ + T + G+ A LS AR L L
Sbjct: 164 ATGVEMAGTLIEIARHTLRGEFRRIDPQQTKVVLLEGSERVLGAYPPDLSEKARTQLLKL 223
Query: 308 GYFVRCIRRVGEF-EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G VR RV E V+ + G Q + V+
Sbjct: 224 GVDVRTGSRVTHIDEECVRYADQGG-------------------------EQRLASRTVI 258
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
W+ G P + ++PL+ G+ L + HP +F +GD +A S G+P
Sbjct: 259 WSAGV------AASPLGKSLNVPLDRAGRVIIGSELSIPDHPEVFVIGDLAAA-ISDGKP 311
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+P + A Q A N+ IN +PL F +Q+ G + +GR A
Sbjct: 312 VPGVSPAAKQMGRVAARNILNRINGKPLESFVYQDYGSLATIGRKAA 358
>gi|428223493|ref|YP_007107590.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
gi|427983394|gb|AFY64538.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
Length = 459
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 173/428 (40%), Gaps = 64/428 (14%)
Query: 67 SASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML 126
+A+QT T K I+GGGFGGLY A L D +V L+D+ +F+P+L
Sbjct: 3 NAAQTET---KAPHHAVIVGGGFGGLYAAKELGK-----DPNVKVTLIDKRNFHLFQPLL 54
Query: 127 YELLSGEVDAWEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE 185
Y++ +G + +I+ P A L N Q VK + P+ G TV L
Sbjct: 55 YQVATGGLSPGDISSPLRAVLGRNKNTQVLMAEVKEIDPA-------------GQTVTLP 101
Query: 186 SGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNF 239
G I YD L+++ G ++ A T+EDA + R++ +E E
Sbjct: 102 DGKI-SYDSLIIATGVSHHYFGNDHWSDDAPGLKTVEDALEMRRRIFLAFEAAEKETDPE 160
Query: 240 GKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLS 299
+ + VVG G +GVELA ++E N TI PT EA + +L
Sbjct: 161 KHKAWLTFVVVGAGPTGVELAGALAELAH----TTLKNDFQTIDPT------EAQIILLE 210
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGL 355
VL + E S K ES + N+ + + ++ + G
Sbjct: 211 G--TDRVLPPYAP--------ELSAKAEES--LTNLGVTVRTKTLVTHIEDGVVTVRNGE 258
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRL---HDLPLNARGQAETDETLCVKGHPRIFA 412
+ + + +LW G K P + L+ G+ + L + +P IF
Sbjct: 259 KIEYLPSQTILWAAGIK-----ASPMGKEIALRTGAELDRVGRVMVEPDLSLPNYPNIFV 313
Query: 413 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRN 471
+GD S RPLP A VA Q+ + + + + PF + + G + ++GRN
Sbjct: 314 IGDLSNFSHQGDRPLPGVAPVAMQEGRYVANVIKRQVRGNHERSPFEYVDRGSLAVIGRN 373
Query: 472 DAAVSPSF 479
A V F
Sbjct: 374 AAVVDLGF 381
>gi|359300345|ref|ZP_09186184.1| NADH dehydrogenase [Haemophilus [parainfluenzae] CCUG 13788]
Length = 426
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 155/373 (41%), Gaps = 55/373 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +VLL+D++ ++KP+L+E+ +G +D A + AN G QF + + +
Sbjct: 28 KRAKVLLIDRNPTHLWKPLLHEVATGSLDDGTDAVSYRAHAANHGFQFQQGTLTGVNREQ 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LV+++G++ G AE E A +
Sbjct: 88 REVILAPIVDEQGEELVKERH--ISYDKLVIAIGSKSNDFGTKGVAEHCIFLDGSEQAKQ 145
Query: 227 VDRKLSELERR-NFGKDSLIRVAVVGCGYSGVELAATVSE---RLEEKGI---------V 273
+++ EL + + +D +++A+VG G +G+EL+A + L E G V
Sbjct: 146 FQQRMLELFLKFSHSQDKDVKIAIVGGGATGIELSAELYNAVAHLNEYGFGKLDRASLKV 205
Query: 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 333
+ + P T +AL L V + L + + A+
Sbjct: 206 TLVEAGPRLIPALTEKVSNSALSELRKAGVDVRLNTMI-----------------TEAVD 248
Query: 334 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393
K+ +K EADL++W G K P + N
Sbjct: 249 GALITKDGEK----------------IEADLMVWAAGIKA------PDFTKELGFETNRL 286
Query: 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453
Q E +TL P +F +GD +AL G+ +P AQ A Q A G N+ A +
Sbjct: 287 NQIEIKDTLQTTIDPNVFVIGDCAALI-QDGKAIPLRAQAAHQMATQCGKNIVALSEGKE 345
Query: 454 LLPFRFQNLGEMM 466
+ PFRF++ G ++
Sbjct: 346 MKPFRFRDKGSLL 358
>gi|337278826|ref|YP_004618297.1| NADH dehydrogenase [Ramlibacter tataouinensis TTB310]
gi|334729902|gb|AEG92278.1| NADH dehydrogenase-like protein [Ramlibacter tataouinensis TTB310]
Length = 450
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 61/415 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAW 137
+PR+ I+G GFGGL A L + P V +VD++ +F+P+LY++ + + A
Sbjct: 13 RPRVLIIGCGFGGLEAAKALR-------RAPVDVTVVDRTNHHLFQPLLYQVATAGLSAP 65
Query: 138 EIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
IA +L + V V + P+ + V L SG + YD LV
Sbjct: 66 AIAAPVRHVLRDQANVTTLLGEVTAIDPALRI-------------VRLGSGEALPYDHLV 112
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ GA A FA TL+DA + R++ +E E + + V+
Sbjct: 113 VAAGATHSYFGRDDWARFAPGLKTLDDAFEIRRRILLAYEAAEKESDPRRRAEWLTFVVI 172
Query: 251 GCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNR--EAALKVLSARKVQLV 306
G G +GVE+A T++E R +G + I+ + G+R + + LS R + +
Sbjct: 173 GGGPTGVEMAGTMAEIARHTLRGEFRRIDPASARVLLIEGGSRVLQTMPEDLSQRAQEQL 232
Query: 307 --LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364
LG VR RV + + Q + GA P+ A +S + A L Q+ EA
Sbjct: 233 QRLGVEVRTGSRVVGIDDTGLQVQPGAGPDAAYRISSRCIVWAAGVAASPLGRQLAEAT- 291
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS- 423
+ + G+ + L ++GHP I +GD +A
Sbjct: 292 ----------------------GIATDRAGRMPVEPDLSLRGHPDISVVGDLAAAMSHHP 329
Query: 424 ---GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
RP+P + A Q A N+ + P PFR+++ G + +GRN A V
Sbjct: 330 RRPARPVPGVSPAAKQMGRAAAANILRRLRGEPTRPFRYRDYGSLATIGRNSAVV 384
>gi|322419925|ref|YP_004199148.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacter sp. M18]
gi|320126312|gb|ADW13872.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacter sp. M18]
Length = 418
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 114/457 (24%), Positives = 184/457 (40%), Gaps = 82/457 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ RI I+G GFGG+ TA L K V+LVD++ +F+P+LY++ + ++
Sbjct: 3 RKRIVIVGMGFGGIRTARVLAG------KGHDVILVDRNNYHLFQPLLYQVATAGLEQES 56
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA + + G QF V GV+ VL ++G ++ YD+LV+
Sbjct: 57 IAHSVRAMARSWPGTQFQLAEVT--------GVD-----FTAREVLTDTG-VIPYDYLVI 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVG 251
G+ + +F L DA + + + +E K +L+ +VG
Sbjct: 103 GAGSVTNYFGLESVEGNSFDLKELADAETLRNHILTAFESAVVEPDPARKRALMTFVIVG 162
Query: 252 CGYSGVELAATVSERLE----------EKGIVQAINVETT--ICPTGTPGNREAALKVLS 299
G +GVE A + E + + + VE T + R+ LK L
Sbjct: 163 GGPTGVEFAGALIELVHFVLAKDYPGLSTHTARVVLVEATDQLLAAMPEKQRKYTLKKLR 222
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
+ V+++L V D ++ +L + I
Sbjct: 223 SMSVEVLLNARV-------------------------TDAGPERVMLH--------DGAI 249
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
A + W+ G K P + D P G+ L + GHP +F +GD + L
Sbjct: 250 IPAHTLFWSAGVK------AAPIAAVLDAPRTTGGRIPVGPELNLPGHPEVFIIGDMAYL 303
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
+ G LP TA VA Q +AG + A L PFRF N G M +GRN AAV+ +F
Sbjct: 304 -EQEGSALPMTAPVAMQMGIYAGRAILAKEQGATLPPFRFHNKGTMATIGRN-AAVASAF 361
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G+ G + L +L L +R+ V ++W+
Sbjct: 362 --GMDFRGYLAWLVWLLLHLYYLIGFRNRIVVMLNWV 396
>gi|21244546|ref|NP_644128.1| NADH dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
gi|21110220|gb|AAM38664.1| NADH dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
Length = 430
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 165/410 (40%), Gaps = 59/410 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + + ++GGGF GL+ L DD ++ LVD+ +F+P+LY++ + +
Sbjct: 5 PSQAPLHLVVVGGGFAGLWATRAL------DDPGIRITLVDRQNHHLFQPLLYQVATAGL 58
Query: 135 DAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
A +IA +L V+ V + PS V+L G + YD
Sbjct: 59 SAPDIAAPLRHILREQRNVEVLLGDVTDIAPSRR-------------EVVLADGGTLGYD 105
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
L+L+ GA AE A TL DA + RKL +E E + + +
Sbjct: 106 MLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSF 165
Query: 248 AVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
AVVG G +GVELA T++E R K + I+ R+A ++++ A
Sbjct: 166 AVVGGGPTGVELAGTLAEIARHTLKNEFRHID------------PRQARVRLVEAGP--- 210
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
R + F + + + + ++ + ++ L A V
Sbjct: 211 ---------RVLPSFPEDLTAKARKQLERLGVEVHTGTPVTQIDALGYQLGDTFVPARTV 261
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G P R +PL+ G+ + L V GHP IF GD ++++ GR
Sbjct: 262 VWAAGV------AASPLARTLGVPLDRAGRVLVEADLSVPGHPEIFVGGDLASVQ-QDGR 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
P+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 315 PVPGVAPAAKQMGKHIAKAIRARQRGQTAPAFRYQDYGNLATIGRMAAIV 364
>gi|23099805|ref|NP_693271.1| NADH dehydrogenase [Oceanobacillus iheyensis HTE831]
gi|22778036|dbj|BAC14306.1| NADH dehydrogenase [Oceanobacillus iheyensis HTE831]
Length = 403
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 161/410 (39%), Gaps = 69/410 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSG------ 132
KP I ILG G+GG+ A R++ L+ ++ K + LV++++ L+E +G
Sbjct: 3 KPHIVILGAGYGGMMAAARMQKLIHSNEAK--ITLVNKNDYHYQTTWLHENAAGTLHHDR 60
Query: 133 -EVDAWEIAPRF-ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
++D E+ R L+ + V ++ K+ + L
Sbjct: 61 SKIDIKEVIDRNRIKLILDEVVSIKREEKKVKLKNQEL---------------------- 98
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFGKDSLIR 246
YD L++SLG EP + +PG +EFA+ + A R++ + N D +
Sbjct: 99 YYDILIVSLGFEPAIYGIPGLSEFAYSIKDINSARLIRERIEYNFALYTNENKPTDGRLN 158
Query: 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+ + G G +GVE A + R+ I + ++E + R+ L VQ
Sbjct: 159 IVIGGGGLTGVEFAGELINRIPT--ICEEYDIEKNLVKVYLLEGRDCVLYGYDDSAVQYA 216
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN--SDKYILELQPAIKGLESQIFEADL 364
+ Q I N A K D I E KG
Sbjct: 217 MNSL---------------QSRGVEIINDATVKACAEDSIIYE-----KGGSEHKISTKS 256
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSS 423
V+WT G+K N+ + L L+ G+ + L I+ +GD S D +
Sbjct: 257 VIWTAGTKA--------NSIVERLNLSMEHGRVKVRNDLRSIEDDSIYLIGDCSLNYDEN 308
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
G LP+TAQ+A QQ +F N+ A I + + F G + LG +D
Sbjct: 309 GNVLPSTAQIAMQQGEFIARNINAKIKGKEMAAFLPDVPGRITSLGSDDG 358
>gi|406833218|ref|ZP_11092812.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Schlesneria paludicola DSM 18645]
Length = 437
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 183/447 (40%), Gaps = 65/447 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+ I+GGGF GL A L D +VL+VD++ +F+P+LY++ + +I
Sbjct: 2 PRVLIVGGGFAGLNLAKGL-----GDVPGVEVLVVDRTNHHLFQPLLYQVAMAGLSPADI 56
Query: 140 APRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A LLA ++ + V+ + +L V+ + G + +D+LVL+
Sbjct: 57 AAPIRSLLARFNNIRVLQGEVRSVDTDRNL-------------VVTDFGEL-PFDYLVLA 102
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----------SELERRNFGKDSLIRVA 248
GA EFA TLE A + R++ + LE R L+
Sbjct: 103 CGARHSYFGHDEWEEFAPGLKTLEQATEIRRRVLSAYESAERTTSLEERK----RLLTFV 158
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
VVG G +GVELA + E N++ T+ AR + L G
Sbjct: 159 VVGGGPTGVELAGAIGEMSRFTLAKDFRNIDATL-----------------ARVILLEAG 201
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
R +G F + + + + + + ++ + ++ + VLW
Sbjct: 202 P-----RILGMFSEQLSARAARDLEQLGVQIWTGSAVTKIDANGVDIGNERIISATVLWA 256
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G K + ++ G+ + L VKGHP IF GD S +GRPLP
Sbjct: 257 AGVKA------SSLGKDSGFEVDRSGRVIVENDLSVKGHPNIFVAGDQSCYTHQTGRPLP 310
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
TA VA QQ + + + PFRF + G+M +GR+ A V V + G
Sbjct: 311 GTAPVAMQQGCYLANLIRIDVQGGKRTPFRFADKGQMATIGRSRAVVE---VGKFKMTGF 367
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSW 515
I A L ++ L +RL+V ++W
Sbjct: 368 IAWMAWLLVHIYYLTGFPNRLRVVLNW 394
>gi|406664971|ref|ZP_11072745.1| NADH dehydrogenase-like protein yjlD [Bacillus isronensis B3W22]
gi|405386897|gb|EKB46322.1| NADH dehydrogenase-like protein yjlD [Bacillus isronensis B3W22]
Length = 395
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/445 (23%), Positives = 177/445 (39%), Gaps = 85/445 (19%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG GF G+ A + +D+ + + +V+Q L+ L G + +A
Sbjct: 5 EIVILGAGFAGVLAAQTARKYLNKDEAR--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V V+L +G V+YD LV++LG
Sbjct: 63 LPLEKIFKGYDINLEIAKVNSFDVESK-------------NVVLSNGKTVQYDTLVVALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDSLIRVAVVGCG-YSGVE 258
++ +PG E +F ++++A + + + ++ KD V+G G +GVE
Sbjct: 110 SQTGFFGIPGLEENSFVLKSVDEANAIREHIEARIKAYATTKDEADATIVIGGGGLTGVE 169
Query: 259 LAATVSERL----EEKGI------VQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
L + + E+ G+ ++ + I P + A K LS R V+ +
Sbjct: 170 LVGEIVDHFPKVAEKYGVKFEDLKIKLVEAGPKILPVFPENLIDRATKSLSKRGVEFI-- 227
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
P +G N+ K+ + + A+ ++WT
Sbjct: 228 ---------------TSTPVTGVEGNVIQLKDREPIV----------------ANTLVWT 256
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNA-------RGQAETDETLCVKGHPRIFALGDSSALRD 421
G PL PL A RG+A ++ L HP +F +GD+SA
Sbjct: 257 GGVAPL--------------PLVAESGLAADRGKATINDFLQSTSHPEVFVIGDASAHIP 302
Query: 422 SSG-RPLPA-TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND--AAVSP 477
+ G RP A TAQVA+QQ + AG+N++A I L F+F N G + LGR D A V
Sbjct: 303 NPGDRPTYAPTAQVAWQQGEIAGYNIFAQIKGADLKEFKFTNSGTLGSLGRKDGIATVGA 362
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRL 502
+ + V L + A + Y+ +
Sbjct: 363 NNTQLVGLPASLMKEASNIRYMTHI 387
>gi|424871453|ref|ZP_18295115.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae WSM1455]
gi|393167154|gb|EJC67201.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae WSM1455]
Length = 421
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/429 (24%), Positives = 178/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 RITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
D GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 DVTGVD-----SGAKTVSLRNGMTLGYDTLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R+L +E+E +D+L+ +VG G +GVELA ++E
Sbjct: 124 --LKTLEDATTIRRRLLLAFEKAEMEPDPAVRDALLTFTIVGAGPTGVELAGIIAELAHF 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V RV F +
Sbjct: 182 TLPKEFRNIDT--------------------RKTRVVL---VEAGPRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + + K + E + + ++W G P R D+
Sbjct: 219 QKALEKLGVEIHLGKPVTECNADGVKIGETFVASRTIVWAAGV------TASPAARWLDV 272
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
+ G+ ++ L G P +F +GD++++ G+P+P A A QQ + + A
Sbjct: 273 ASDRAGRVVVEKDLSAPGLPNVFVVGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRAR 332
Query: 449 INDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
I+ +P PFR+ + G + +G++ A + ++ L G + LA++ L
Sbjct: 333 ISGKPAPAPFRYWHQGSLATIGKSAAIIDFGRIK---LKGWLAWWIWGLAHIYFLIGTRS 389
Query: 508 RLKVGVSWL 516
R V SWL
Sbjct: 390 RFSVAWSWL 398
>gi|169826361|ref|YP_001696519.1| NADH dehydrogenase-like protein [Lysinibacillus sphaericus C3-41]
gi|168990849|gb|ACA38389.1| NADH dehydrogenase-like protein [Lysinibacillus sphaericus C3-41]
Length = 394
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 165/401 (41%), Gaps = 51/401 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+ G+ TAL + D+ K + +V+Q L+ L G + +A
Sbjct: 4 EIVILGAGYAGVLTALTARKYLSADEAK--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V + V L++G + YD LV+SLG
Sbjct: 62 LPLKKIFKGLDIDLHIAKVTKFNVDNK-------------KVDLDNGYTLTYDTLVVSLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIRVAVVGCG-YSGVE 258
++ +PG E + ++ DA ++++ + + ++ KD V+G G +GVE
Sbjct: 109 SQTGFFGIPGLEENSMVLKSVNDANKINKHIEDRIKAYAQSKDEADATIVIGGGGLTGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
L + + + +N EA K+L L+ +R
Sbjct: 169 LVGEIVDNFPKIAAKHGVNFADLKIKL-----VEAGPKILPVLPDTLIQRATESLTKRGV 223
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
EF P +G N+ + K+ + + A+ ++WT G PL P V
Sbjct: 224 EFITGT--PVTGVDGNVISLKDREPIV----------------ANTLVWTGGVAPL-PIV 264
Query: 379 EPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA-TAQVAF 435
L A RG+A +E L H +F +GD+S AL GRPL A TAQVA+
Sbjct: 265 GESG-------LAADRGKATINEFLQSTSHEDVFVIGDASVALPADGGRPLYAPTAQVAW 317
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
Q + AG+N++A ++ + F N G + LGR DA +
Sbjct: 318 QMGELAGYNVFAQYKNQEMKSFSAVNSGTLASLGRKDAVAT 358
>gi|70727011|ref|YP_253925.1| hypothetical protein SH2010 [Staphylococcus haemolyticus JCSC1435]
gi|123659769|sp|Q4L4V6.1|Y2010_STAHJ RecName: Full=NADH dehydrogenase-like protein SH2010
gi|68447735|dbj|BAE05319.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 402
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 180/414 (43%), Gaps = 72/414 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D+ + L+++++ L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSADE--ADITLINKNKYHYEATWLHEASAGTLN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DL+ +D+VK + + N T+ G I +YD L
Sbjct: 60 ------YEDLIYPIESVIKEDKVKFINAEVTKIDRNAKKVETNHG--------IYDYDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG E + + G ++AF +E A ++ R + E + N+ D + + V
Sbjct: 106 VVALGFESETFGINGMKDYAFQIENIETARKLSRHI-EDKFANYAASKEKDDKDLAILVG 164
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTIC-PTGTPGNR------EAALKVLSARKV 303
G G++G+E ++ER+ E +C G N+ EAA K+L
Sbjct: 165 GAGFTGIEFLGELTERIPE------------LCNKYGVDQNKVRVTCVEAAPKMLPMFSD 212
Query: 304 QLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+LV Y V + G EF+ A P +A N +++++ + Q EA
Sbjct: 213 ELV-NYAVNYLEDRGVEFKI--------ATPIVAC--NEKGFVVKIND-----QEQQLEA 256
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-L 419
+W G + ++L + RG+ T + L ++GH IF +GD SA +
Sbjct: 257 GTAIWAAGVR---------GSKLMEESFEGVKRGRIVTKQDLTIEGHDDIFVIGDVSAFI 307
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ + ++ +N + F + + G + LG +D
Sbjct: 308 PAGEERPLPTTAQIAMQQGEHVAKSIKNILNGQAATDFEYVDRGTVCSLGAHDG 361
>gi|89094523|ref|ZP_01167462.1| Respiratory NADH dehydrogenase II [Neptuniibacter caesariensis]
gi|89081259|gb|EAR60492.1| Respiratory NADH dehydrogenase II [Oceanospirillum sp. MED92]
Length = 434
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 170/402 (42%), Gaps = 52/402 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ++GGG GGL +L ++ + QV LVDQ ++KP+L+E+ +G +D A
Sbjct: 9 KILVIGGGAGGLELVTQLGRR-YKKNTNIQVTLVDQKRSHIWKPLLHEVATGSLDPSTDA 67
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACT---HGGTVLLESGLIVEYDWLVL 197
+ A+ ++ ++ C D +A + +L E L ++D L+L
Sbjct: 68 VIYH---AHAAKHHYEFQLGTFCGLDRASKTVTLAEILDDNDQQILPERTL--QFDTLIL 122
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDSLIRVAVVGCGYSG 256
++G+ PG E F T + A R L + R N + ++ +A+VG G +G
Sbjct: 123 AIGSVSNDFNTPGVKEHCFFLDTAKQAERFHNALINNFMRVNQQDEGVLNIAIVGAGATG 182
Query: 257 VELAA---TVSERLEEKGI--VQAINVETTICPTGTPGNREAALKVLSARKVQL-VLGYF 310
VEL+A V++ L+ G+ + + ++ +I G ++ S+ K +L LG
Sbjct: 183 VELSAELYNVTDMLKSYGLPKMTSKQLKVSIIEAGPRILPALPARISSSAKNELSALGVE 242
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
V C + +KQ E+ DK S AD+++W G
Sbjct: 243 V-CENTL------IKQAEADGFITAEGDKIS--------------------ADMMIWAAG 275
Query: 371 SKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
V+ P+ ++ L Q TL IF +GD A G +P
Sbjct: 276 -------VKAPDFLADIYQFELTRTNQILVKPTLQASNDDSIFVIGDCCACAQEDGSWVP 328
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
AQ A Q A N+ IN++ L F +++ G ++ L R
Sbjct: 329 PRAQSAHQMASLVKTNIHQQINNKALKHFTYKDHGSLVNLSR 370
>gi|443309114|ref|ZP_21038877.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
gi|442780841|gb|ELR90971.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
Length = 439
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 184/447 (41%), Gaps = 62/447 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K I ++G GFGGL A L VLL+D++ F P+LY++ + +++
Sbjct: 15 QKFSIVVIGAGFGGLQAAKSLAR------SGKDVLLIDRNNYHTFVPLLYQVATAQIEPE 68
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA +L F V+ + S+ V+ L ++Y++LV+
Sbjct: 69 LIAYPVRTILRRRYGHFLMAEVEQIDFSER--------------VIRTDRLDIQYNYLVV 114
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-------SELERRNFGKDSLIRVAVV 250
+ G++ + V GAAEFA P TLE+A + ++ S LE + + L+ A+V
Sbjct: 115 ATGSQTQYLGVAGAAEFALPLRTLEEAVTLRDRIFACFEAASRLEPEH--RQHLLTFAIV 172
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVE+ E L + I E + RE L +L A
Sbjct: 173 GGGATGVEIVGAFVELLRSR-----IRREYP-----SLNWREVKLSLLQASD-------- 214
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTV 369
R + E A + + + D + + ++ L + Q V+W
Sbjct: 215 ----RLLTELPAKLGLAAQKYLQKLGVDVRLETRVKQISDTEVYLSDGQKISTATVIWVA 270
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G + +P + +L +++G+ TL +P ++A+GD++ + + + +PL
Sbjct: 271 GLEAAIPDLS------EELLKSSKGKLLVRPTLQSLTYPNVYAIGDAAYV-EQANKPLSG 323
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 489
A A QQ N+ + + PFR+ N G + I+G + + G +
Sbjct: 324 VAPEALQQGVTVAQNITRQLRGQEPKPFRYFNKGRLAIIGCYSGV---GLIGKWKVTGFL 380
Query: 490 GHSARKLAYLIRLPTDEHRLKVGVSWL 516
+L+ LP +RL V + WL
Sbjct: 381 AWIMWLGVHLVYLPGLRNRLVVLLCWL 407
>gi|374709289|ref|ZP_09713723.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Sporolactobacillus inulinus CASD]
Length = 405
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 179/414 (43%), Gaps = 74/414 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GG+ TA+RLE + +D + LV++ L+E +G +
Sbjct: 3 KPKIVILGAGYGGMMTAVRLEKELKAED--ADITLVNKHNYHYQTTWLHEAAAGTIHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+++ V+F +D V + + V L++G I EYD+L+++
Sbjct: 61 TRMLIKNVINTKRVKFVQDTVGSIDRENK-------------KVALKNGEI-EYDYLIVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCGY 254
LG E + G AE AF ++ A ++ + K + KDS + + V G G
Sbjct: 107 LGFESNTFGIKGLAENAFAIRSVNTARKIREHIEYKFASYNNDPDAKDSDLTIVVGGAGL 166
Query: 255 SGVELAATVSERL----EEKGI----VQAINVETT--ICPTGTPGNRE---AALKVLSAR 301
SG+E + +R+ +E I V+ ++VE + P P +RE A L ++
Sbjct: 167 SGIEFLGELVDRIPDLCKEYDIDPNKVKIVDVEGMPFVLP---PFDRELAKYAQNYLESK 223
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V L F++ EA+ PE + K + + E+Q
Sbjct: 224 GVTFKLSTFIK--------EAT---PEG-----VKVQKKDSEELEEIQ------------ 255
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-- 419
A V+WT G K H+ P ++ RG+ + E L IFA+GD + +
Sbjct: 256 AGTVVWTGGVKA--NHI-PADSGFE----TNRGKIQVTEDLRYPEDDHIFAVGDVAVVFP 308
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+D+ RP P TAQ+A Q+A+ N+ ++ F ++ G + LG A
Sbjct: 309 KDAE-RPYPPTAQIAIQEAENLAKNIKHILHGEKTEAFVYKPKGTVASLGEKQA 361
>gi|15615969|ref|NP_244273.1| NADH dehydrogenase [Bacillus halodurans C-125]
gi|10176030|dbj|BAB07126.1| NADH dehydrogenase [Bacillus halodurans C-125]
Length = 400
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 158/386 (40%), Gaps = 79/386 (20%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP I ILG G+GG+ TA RL + +D + LV++ L+E +G + A +
Sbjct: 3 KPNIVILGAGYGGIITASRLSKQLGHND--ANITLVNKHSYHYQTTWLHEPAAGTIPAEK 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
D+L V F +D + V+LE+G + EYD+LV++
Sbjct: 61 ARVPIKDVLDLNKVNFVQDTAVEI-------------DRDAKKVVLENGEL-EYDYLVVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-------SELERRNFGKDSLIRVAVVG 251
LG+ + VPG E AF T+ A +V + + LE + KD L+ V G
Sbjct: 107 LGSVAETFGVPGVFEHAFSKWTVNGARQVKEHIEYMFATYNNLEEK---KDELLTFIVAG 163
Query: 252 CGYSGVELAATVSERL----------EEKGIVQAINVETTICPTGTPGNREAALKVLSAR 301
G++G+E +S+R+ EK + I T P P E A+ +L +R
Sbjct: 164 AGFTGIEFVGELSKRVPELCATYDVPREKVKMYVIEAAPTALPGFDPELVEYAMNLLESR 223
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+ + ++ + + G A N D+ +
Sbjct: 224 GVEFKINCPIKEVVKDGVILA-----------------NGDE----------------IK 250
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-AL 419
++ V+W G + P + + A RG+ + + L GH IF +GD + +
Sbjct: 251 SNTVVWATGVRG--PEI------IEKSGFEAMRGRIKVESDLRAPGHEEIFVIGDCALII 302
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNL 445
+ RP P TAQ+A Q A+ NL
Sbjct: 303 NEEINRPYPPTAQIAIQMAETCAHNL 328
>gi|338997759|ref|ZP_08636451.1| NADH dehydrogenase [Halomonas sp. TD01]
gi|338765388|gb|EGP20328.1| NADH dehydrogenase [Halomonas sp. TD01]
Length = 432
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 113/450 (25%), Positives = 193/450 (42%), Gaps = 49/450 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + K+ +++L+D++ V+KP+L+EL +G +++
Sbjct: 4 PRIVIVGGGAGGLALATRLGRTLGKK-KRAEIVLLDRNATHVWKPLLHELATGVLNS--- 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYD 193
+ D ++ ++ + L G++ H + E G+ V YD
Sbjct: 60 SMDEVDYRGHSSAHHYRYQRGSLN-----GLDREQKVIHLAPIKDEDGVEVLPSRKLTYD 114
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----NFGKDSLIRVAV 249
+LV++LG+ G AE + + A R + R +++ + + +
Sbjct: 115 YLVIALGSISNDFGTTGVAEHCHFIDSPQQAKAFQRDMINTFLRYTDPTLRQNAELTIGI 174
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
VG G +GVEL+A E L+ ++ A V T + EAA ++L
Sbjct: 175 VGGGATGVELSA---ELLDASRLLNAYGVTAVDHQTISVHLIEAAPRLLPGLS------- 224
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
R+ E + + A + + +Y L + G + ++ E DL +W
Sbjct: 225 -----ERISETVQQELESMGVTVHAGTAIQEAQQYQL-----VTG-DGEVIETDLNVWAA 273
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G K PP DL N + Q +TL P IFA+GD + + +P
Sbjct: 274 GIKA------PPFLAELDLTTNKKNQISVHQTLQSVDDPYIFAMGDCADCPQGEDKTVPP 327
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA---VSPSFVEGVTLD 486
AQ A QQA NL +N +PL F +++ G ++ L R DA + S G+ L+
Sbjct: 328 RAQAAHQQAKVLAKNLVHCLNSKPLQNFTYRDHGSLVSLARYDAVGNLMRSSASRGLFLE 387
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G + A Y + + K G++WL
Sbjct: 388 GWLARQAYASLYRMHQLSIHGAPKTGLAWL 417
>gi|417907483|ref|ZP_12551255.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
capitis VCU116]
gi|341596069|gb|EGS38700.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
capitis VCU116]
Length = 402
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 179/411 (43%), Gaps = 66/411 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D+ ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKEISADE--AEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL +D+V + + N T G + +YD L
Sbjct: 60 ------YEDLLYPVESAVKQDKVNFVVAEVTKIDRNAKRVETDKG--------VYDYDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G ++AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIEGMKDYAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE----KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
G G++G+E +++R+ E GI Q+ V+ T EAA K+L +LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGIDQS-KVKLTCV--------EAAPKMLPMFSDELV 215
Query: 307 LGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
Y V + G EF+ A P +A N +++E+ E Q EA
Sbjct: 216 -NYAVNYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVDG-----EKQQLEAGTS 259
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
+WT G + ++L + RG+ + L ++GH IF +GD SA +
Sbjct: 260 VWTAGVR---------GSKLMEESFEGVKRGRIINKQDLTIEGHDDIFVIGDCSAFIPAG 310
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ + N+ +N F++ N G + LG +D
Sbjct: 311 EERPLPTTAQIAMQQGEHVAKNIKHILNGESKEDFQYVNRGTVCSLGAHDG 361
>gi|197122132|ref|YP_002134083.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter sp. K]
gi|196171981|gb|ACG72954.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anaeromyxobacter sp. K]
Length = 453
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 159/416 (38%), Gaps = 78/416 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF GLY A L ++ LVD+ +F+P+LY++ + +
Sbjct: 9 QQTPHVVIVGGGFAGLYAARELAG------APVRITLVDRRNHHLFQPLLYQVATAALSP 62
Query: 137 WEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA +L+ V+ + P+ + L G ++YD+L
Sbjct: 63 ADIAEPIRHVLSRQRNVRTLLAEAAAVEPAQR-------------RLRLADGYALDYDFL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVAVV---- 250
V++ GA A FA TLEDA + R+ L+ ER D R A++
Sbjct: 110 VVAAGATHSYFGHDEWARFAPGLKTLEDALEIRRRVLTAFERAEADPDRQRREALLTFVV 169
Query: 251 -GCGYSGVELAATVSERLE------------EKGIVQAINVETTICPTGTPGNREAALKV 297
G G +GVELA ++E E+ V I + P P AA +
Sbjct: 170 VGGGPTGVELAGALAEIARFTVPRDFRTVSTERARVILIEGSERVLPALPPSLSAAAQRD 229
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L VQ+ G K + + P +
Sbjct: 230 LERLGVQVWTG----------------------------------KRVTGIDPRGVQVGE 255
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+ A VLW G P R +PL+ G+ L V GH I+ +GD +
Sbjct: 256 ERVAARTVLWAAGV------AGAPLARTLGVPLDPAGRVPVSPDLTVPGHEEIYVVGDLA 309
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RD G +P A A QQ AG NL A + RP PF + + G M +GR A
Sbjct: 310 LARDKHGAAIPGVAPAAIQQGRHAGRNLLATLRGRPRTPFVYFDKGVMATVGRGRA 365
>gi|78049503|ref|YP_365678.1| NADH dehydrogenase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78037933|emb|CAJ25678.1| putative NADH dehydrogenase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 441
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 103/415 (24%), Positives = 167/415 (40%), Gaps = 60/415 (14%)
Query: 71 TYTWPDKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
T T P + P + ++GGGF GL+ L DD ++ LVD+ +F+P+LY++
Sbjct: 11 TMTSPPSQAPLHLVVVGGGFAGLWATRAL------DDPGIRITLVDRQNHHLFQPLLYQV 64
Query: 130 LSGEVDAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
+ + A +IA +L V+ V + P V+L G
Sbjct: 65 ATAGLSAPDIAAPLRHILREQRNVEVLLGDVTDIAPDRR-------------EVVLADGS 111
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKD 242
+ YD L+L+ GA AE A TL DA + RKL +E E +
Sbjct: 112 TLGYDMLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARA 171
Query: 243 SLIRVAVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
+ + AVVG G +GVELA T++E R K + I+ R+A ++++ A
Sbjct: 172 AWLSFAVVGGGPTGVELAGTLAEIARHTLKNEFRHID------------PRQARVRLVEA 219
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R + F + + + + ++ + ++ L
Sbjct: 220 GP------------RVLPSFPEDLTAKARKQLERLGVEVHTGTPVTQIDVLGYQLGDTFV 267
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
A V+W G P R +PL+ G+ + L V GHP IF GD ++++
Sbjct: 268 PARTVVWAAGV------AASPLARTLGVPLDRAGRVLVEADLSVPGHPDIFVGGDLASVQ 321
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
GRP+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 322 -QDGRPVPGVAPAAKQMGKHIAKAIRARQRGQTAPAFRYQDYGNLATIGRMAAIV 375
>gi|39995601|ref|NP_951552.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens PCA]
gi|409911058|ref|YP_006889523.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens KN400]
gi|39982364|gb|AAR33825.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens PCA]
gi|298504621|gb|ADI83344.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens KN400]
Length = 419
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 116/451 (25%), Positives = 187/451 (41%), Gaps = 74/451 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGG+ A L K V+LVD++ +F+P+LY++ + ++ IA
Sbjct: 3 RVVIIGMGFGGIRAARTLAQ------KGLDVVLVDRNNYHLFQPLLYQVATAGLEQESIA 56
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P A TG +F L + T GT+ YD+LV+
Sbjct: 57 YPVRAMARGWTGTRF------QLAEVTGVDFEARQVVTDNGTI--------PYDYLVIGA 102
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVGCG 253
G+ + + AF L DA R+ + L+ ER D +L+ +VG G
Sbjct: 103 GSVTNYFGLKSVEQHAFDLKELVDAERLRNHILTAFERAVVEPDPAKRRALMTFVIVGGG 162
Query: 254 YSGVELAATVSERLEE-------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+GVE A + E + + VQA V EA ++L+A +L
Sbjct: 163 PTGVEFAGALIELVRYVLTKDYPELSVQAARVVLV----------EAFDRLLAAMPAEL- 211
Query: 307 LGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
GY + +R +G E + + D ++ L + + A +
Sbjct: 212 QGYTLEKLRGMGVEVLLNAR----------VVDAGPERVTLH--------DGAVIPAHTL 253
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
W+ G K P + N G+ + L + GHP ++ +GD + L + G
Sbjct: 254 FWSAGVK------AAPLAATLGVEQNPGGRIAVEPDLTLPGHPDVYVVGDMAWL-EQDGA 306
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
PLP A VA Q AG ++ A P PFR+ + G M +GR+ AAV+ +F G+ L
Sbjct: 307 PLPMVAPVAMQMGIHAGKSILAREQGAPAPPFRYHDKGSMATIGRS-AAVASAF--GMNL 363
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G A L +L L +R+ V ++W+
Sbjct: 364 RGYAAWIAWLLLHLYYLIGFRNRIVVMLNWI 394
>gi|359395628|ref|ZP_09188680.1| NADH dehydrogenase [Halomonas boliviensis LC1]
gi|357969893|gb|EHJ92340.1| NADH dehydrogenase [Halomonas boliviensis LC1]
Length = 426
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/425 (23%), Positives = 179/425 (42%), Gaps = 52/425 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +++L+D++ V+KP+L+EL +G +++ + DL ++ F++ + L
Sbjct: 24 KRAEIVLLDRNTTHVWKPLLHELATGVLNS---SMDEVDLRGHSSAHFYRYQRGSLT--- 77
Query: 167 HLGVNGPMACTHGGTVLLESGLIV------EYDWLVLSLGAEPKLDVVPGAAEFAFPFST 220
G+N + E G V YD+LV+++G+ PG AE +
Sbjct: 78 --GLNREQQTLQLAPIHDEDGQEVLPARELAYDYLVMAIGSVSNDFGTPGVAEHCHFIDS 135
Query: 221 LEDACRVDRKLSELERR----NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276
E A R + R N + + + + +VG G +GVELAA E + ++ A
Sbjct: 136 PEQAKAFQRDMINTFLRYTDPNLRQHTQLTIGIVGGGATGVELAA---ELFDASRMLNAY 192
Query: 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 336
V + N++ ++ +L A R + V + + ++
Sbjct: 193 GVTSL-------DNQQISVHLLEA------------APRLLPGLSERVSETVKTELESMG 233
Query: 337 ADKNSDKYILELQPA--IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394
++D + E Q + G + ++ + D+ +W G K PP L N +
Sbjct: 234 VTVHTDTAVKEAQAHQLVTG-DDEVIKTDINVWAAGIKA------PPFLAELGLTTNKKN 286
Query: 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 454
Q + TL +IFALGD ++ +P AQ A QQA NL + +PL
Sbjct: 287 QIDVKSTLQSVDDEKIFALGDCASCPMGEDSTVPPRAQAAHQQAKLLAKNLVNLLEGKPL 346
Query: 455 LPFRFQNLGEMMILGRNDAA---VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 511
FR+++ G ++ L R DA + S G+ L+G + A Y + + K
Sbjct: 347 ADFRYRDHGSLVSLARFDAVGNLMRSSASRGLFLEGWLARQAYASLYRMHQLSIHGAPKT 406
Query: 512 GVSWL 516
G++WL
Sbjct: 407 GLAWL 411
>gi|398025028|ref|XP_003865675.1| NADH dehydrogenase, putative [Leishmania donovani]
gi|322503912|emb|CBZ38998.1| NADH dehydrogenase, putative [Leishmania donovani]
Length = 527
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 191/469 (40%), Gaps = 88/469 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + +LG G+ G Y A + D + ++ VF P+L + +G ++
Sbjct: 11 KPNVVVLGTGWAGCYAAHHV------DPNLCNIHVISTRNHMVFTPLLPQTTTGTLEFRS 64
Query: 139 IAPRFADL---LANTGVQFFK--------DRVKLLCP-------SDHLGVNGPMACTHGG 180
+ ++ LA +F + D ++ C S+++ VN
Sbjct: 65 VCEPITNIQPALAKPPHRFLRSVIYDVDFDEKQVKCVGVGVVGGSENVPVNT-------- 116
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNF 239
V YD+L+++ GA P +PG E AF + +A + ++L + + N
Sbjct: 117 -------FSVPYDYLIMAYGARPNTFNIPGVEEKAFFLREVNEARGIRKRLVQNIMTANL 169
Query: 240 GKDS------LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREA 293
S L+ VVG G +G+E AA ++E E NV T++ P
Sbjct: 170 PTTSIAEAKRLLHTVVVGGGPTGIEFAANLAEFFRE----DIKNVNTSLLPY-------C 218
Query: 294 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353
+ VL A + VLG F +RR G+ + E I A +D+ +
Sbjct: 219 KVTVLEAGE---VLGSFDTALRRYGQLRLNQLGVE---IRKTAVVGVTDEEVFTKS---- 268
Query: 354 GLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV----KGH 407
++ LV+W+ VGS P+ ++ RG+ D+ L V K
Sbjct: 269 ---GEVLPTGLVVWSTGVGSGPVTKALKCDKTN--------RGRISIDDHLRVLRDGKPI 317
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMM 466
P +FA GD +A S+ RPLP A VA +Q + G + + + + PF +++LG M
Sbjct: 318 PNVFAAGDCAA---SNERPLPTLAAVASRQGRYIGKEMNNLLKGKQMSRPFVYRSLGSMA 374
Query: 467 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+G A VS L+G K AYL L + +L V V+W
Sbjct: 375 SIGNRSAIVSLGDKFKFDLNGCAALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|420185267|ref|ZP_14691362.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM040]
gi|394255001|gb|EJD99961.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM040]
Length = 402
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/408 (25%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V+SLG + + G E AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVSLGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV- 215
Query: 308 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y V+ + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSV 260
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
WT G + H+ + RG+ + L ++GH IF +GD SA + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|407804213|ref|ZP_11151040.1| NADH dehydrogenase [Alcanivorax sp. W11-5]
gi|407021865|gb|EKE33625.1| NADH dehydrogenase [Alcanivorax sp. W11-5]
Length = 418
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 154/382 (40%), Gaps = 64/382 (16%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
+ LVD S V+KP +E+ +G +DA A D A+ + ++ L D G
Sbjct: 21 ITLVDSSSIHVWKPRYHEVATGAIDADLDA---VDYRAHARLNHYRFEPGTLTQVDAAGQ 77
Query: 171 NGPMACTH---GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
+A H G VL E L YD+LVL++G++ PG E A + + A R
Sbjct: 78 TVTLAPVHDQQGEEVLPERKL--AYDYLVLAVGSQSNDFNTPGVREHALFLDSRQQADRF 135
Query: 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVS-----------ERLEEKGI-VQA 275
+ ++ + VA+VG G +GVELAA + E L+ K + V
Sbjct: 136 RERFLNACLHANHVNAPLSVAIVGGGATGVELAAEIHHAISMLKLYGHEHLDRKQLNVHL 195
Query: 276 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335
I I P T A L A VQ+ + V A PN
Sbjct: 196 IEAAPRILPVLTERVSATAHARLEALGVQVHVNTLV-----------------ERAEPNT 238
Query: 336 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNAR 393
KN D ADL++W G V+ P+ + L N
Sbjct: 239 FVVKNGDD----------------ITADLLVWAAG-------VKAPDVLGGIDGLERNRI 275
Query: 394 GQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN-D 451
Q + TL KG PRIF +GD +A L S +P+P AQ A Q A N + D
Sbjct: 276 NQIVVEPTLQAKGQPRIFVIGDCAACLLPGSEKPIPPRAQSAQQMAQHMAKNFERLLQYD 335
Query: 452 RPLLPFRFQNLGEMMILGRNDA 473
+PL PF +++ G ++ L + ++
Sbjct: 336 KPLQPFTYKDRGSLVSLSQYNS 357
>gi|392550972|ref|ZP_10298109.1| NADH dehydrogenase [Pseudoalteromonas spongiae UST010723-006]
Length = 439
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 165/403 (40%), Gaps = 66/403 (16%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ + L+D++ ++KP+L+E+ +G +D ++ A G QF L +D
Sbjct: 32 QRANITLIDKNRTHIWKPLLHEVATGSLDTSLDGVSYSAHAATHGFQFILGEFIKLDTND 91
Query: 167 HLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
++ G VLL E L YD L++++G+ PG AE + + + A
Sbjct: 92 Q-AISLKQHNDDNGKVLLPERAL--HYDKLIIAIGSISNDFNTPGVAEHCYFLDSQQQAE 148
Query: 226 RVDRKL----SELERRNFGKDS----LIRVAVVGCGYSGVELAA---TVSERLEEKGIVQ 274
R L + + + + G+ S + +A+VG G +GVEL+A VS L+ G+ +
Sbjct: 149 RFQHALLNSFTRVHQNSSGEQSSQSNSLSIAIVGGGATGVELSAELIHVSGLLKHYGLSE 208
Query: 275 AINVETTIC-----PTGTPGNREAALKVLS--ARKVQLVLGYFVRCIRRVGEFEASVKQP 327
+ + I PT P A K +S AR+ L LG V R+ E
Sbjct: 209 FKSTQLRIHLIEAGPTILP----ALPKRISDAARRELLNLGIQVLENTRISEAN------ 258
Query: 328 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 387
Q E + ADL+LW G K V +
Sbjct: 259 ---------------------QHGFVTAEGEEIAADLMLWAAGVK-----VADFIKSIDG 292
Query: 388 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447
L N Q D L KG ++ LGD+SA S G +P AQ A Q A N+ A
Sbjct: 293 LEFNRSNQVLVDPYLQAKGVEHVYVLGDASACEQSDGSFVPPRAQAAHQMASNLAVNILA 352
Query: 448 AINDRPLLPFRFQNLGEMMILGRNDAAVS--------PSFVEG 482
+N + PF++++ G ++ L R A S F+EG
Sbjct: 353 ELNGKAKTPFKYKDHGSLVNLSRFSAVGSLMGNLTNNSMFIEG 395
>gi|407689507|ref|YP_006804680.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292887|gb|AFT97199.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 430
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 152/372 (40%), Gaps = 41/372 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ ++ LVD+S ++KP+L+E+ +G +D +A A +F + L
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYAIHAAAHHYRFQLGEMCSLNAQA 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G VL E + YD LVL++G+ PG AE + +L+ A R
Sbjct: 88 QTITLSPLIDEEGTQVLPERE--IHYDQLVLAVGSVSNDFGTPGVAEHCYFLDSLKQAER 145
Query: 227 VDRK-LSELERRNF--GKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283
R L++L R N KD+ I VA+VG G +G ELAA Q +V
Sbjct: 146 FHRALLNQLIRINQQEDKDARIDVAIVGAGATGTELAA------------QLHHVANLSK 193
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
G P + LK+ + +L + A+ + D
Sbjct: 194 AYGMPDMSASRLKITIVEAGERIL----------PALPERIANSARKALHKLGVDIKEQT 243
Query: 344 YILELQPAIKGLESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAET 398
+ E KGL ++ +ADL++W G V+ P+ +L N Q
Sbjct: 244 MVAEADA--KGLITKGGGRIDADLMVWAAG-------VKAPDFITKLALFETNRANQILV 294
Query: 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458
D+ L H I+ LGD + +G+ +P AQ A Q AD N+ + + F
Sbjct: 295 DKQLRSSSHKNIWVLGDCCGFQQENGKWVPPRAQSAHQMADIVAHNITSLFTQKDTKDFT 354
Query: 459 FQNLGEMMILGR 470
+++ G ++ L +
Sbjct: 355 YKDYGSLVHLSK 366
>gi|325282971|ref|YP_004255512.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Deinococcus proteolyticus MRP]
gi|324314780|gb|ADY25895.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Deinococcus proteolyticus MRP]
Length = 379
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 172/405 (42%), Gaps = 82/405 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLS-GEVDAWEI 139
+ ILG G+GG+ TA L+ D VLL+DQ + +L+E G+ I
Sbjct: 2 KTIILGAGYGGMATATALKPTENLD-----VLLIDQRPYHTYYTLLHEAAGHGKTVTTPI 56
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P LL TGV++ + V DH+ ++ V L+ G +++YD LV+S+
Sbjct: 57 QP----LLQGTGVEYEQASV------DHVDLDAR-------AVHLKDGRVLDYDKLVVSM 99
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--GKDSLIRVAVVGCGYSGV 257
G+E + G E A +EDA K+ + + F G V + G G +G
Sbjct: 100 GSETNFYGIKGLQENADVLKEIEDA----EKIYDWVNKAFEPGYTGSRDVIIGGAGLTGT 155
Query: 258 ELAATVSERLEE----KGI----VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
EL +++R EE G+ + + T+ PT RE A+ VL ++++ +
Sbjct: 156 ELITELAQRSEELSFKTGLPGLKLYLVEAGPTVLPTVDEKLRERAIGVLKDYGIEILTSH 215
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ + SG++ +E Q G QI E ++WT
Sbjct: 216 -------------KIVEAASGSV------------TVENQA---GARRQI-EGGKIVWTG 246
Query: 370 G--SKPLLPH---VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
G ++ LL V P NR+ + D+TL + +P +F +GD +A S G
Sbjct: 247 GIRARNLLRGEQIVGGPGNRI-----------KVDQTLQAQNYPDVFVIGDMAAANASDG 295
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
P+P+TAQ A Q+ NL L P+ + GE + LG
Sbjct: 296 APVPSTAQHAGQEGRHTAANLMRLARGEALEPYEPYSQGEFVSLG 340
>gi|302867292|ref|YP_003835929.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Micromonospora aurantiaca ATCC 27029]
gi|302570151|gb|ADL46353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora aurantiaca ATCC 27029]
Length = 432
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 119/458 (25%), Positives = 196/458 (42%), Gaps = 83/458 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ G V+
Sbjct: 3 KPRVVIVGAGFAGYHAAKTLRRLA---RDRAEIVLLNTTDYFLYLPLLPEVAVGVVEPTR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
IA A L V + DRV L + V G HG + YD LV
Sbjct: 60 IAVPLAGTLDGVRVVIGEADRVDLQNRWVGYRSVEG----DHGQ---------LAYDRLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRK--LSELERRNFGKDSLIRVAVV 250
LS+G+ KL +PG E+A F L +A V R+ L+EL + + + VV
Sbjct: 107 LSVGSVNKLLPIPGVTEYAHGFRGLPEALFLHDHVVRQVELAELTQDPAEQRARTTFVVV 166
Query: 251 GCGYSGVELAAT--------VSER--LEEKGIVQAINVETTICPTGTPGNREAALKVLSA 300
G GY+G E+AA +++R L+ + ++V + P A +VL
Sbjct: 167 GAGYTGTEVAAHGQLFTDRLMAQRPHLKVRPRWMLLDVAPRVLPELDRRMSVTADRVLRK 226
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V + +G V A+ D +L + +
Sbjct: 227 RGVDVRMGTSV-------------------------AEATPDGVMLT--------DGEYV 253
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSAL 419
++W VG + P+ + +L L +G+ DE L V G+P +FA GD++A+
Sbjct: 254 PTCSLVWCVGVR--------PDPFVAELGLRTEKGRLVVDEFLNVPGYPEVFACGDAAAV 305
Query: 420 RDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
D + G+ TAQ A +Q A N+ A+ ++ +LG ++ LG DAA +P
Sbjct: 306 PDPTRPGQVCAMTAQHAQRQGKLAAHNIAASYGQGVRKSYKHHDLGWVVDLGGKDAAANP 365
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V L G + + +L+ +P + R +V W
Sbjct: 366 L---KVPLAGLPAKAVTRGYHLLAMPGN--RPRVAADW 398
>gi|429749408|ref|ZP_19282533.1| pyridine nucleotide-disulfide oxidoreductase [Capnocytophaga sp.
oral taxon 332 str. F0381]
gi|429168295|gb|EKY10138.1| pyridine nucleotide-disulfide oxidoreductase [Capnocytophaga sp.
oral taxon 332 str. F0381]
Length = 424
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 178/423 (42%), Gaps = 93/423 (21%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + I+GGGF GL L+ K ++ LVD + F P+LY+L +G ++
Sbjct: 4 KKHVVIVGGGFAGLQLMKGLDR-----SDKYKITLVDINNYNFFPPLLYQLAAGFMEPSS 58
Query: 139 IAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ F LL + +F +K + P+++ V+L +G + YD LV+
Sbjct: 59 ISYPFRRLLRQHKNARFRMGVLKEVVPAEN-------------KVILSNGEL-GYDILVM 104
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--SELERRNFGKDSLIR-----VAVV 250
+ GAE E A P T+ DA + R L + LER D +R A+
Sbjct: 105 ATGAESNFFGNKNVEEKAMPMKTVGDALML-RNLVYTRLERATRTDDKEVRRKLLSFAIA 163
Query: 251 GCGYSGVELAATVSERLE-------------EKGIVQAINVETTICPTGTPGNREAALKV 297
G G +GVEL+ +E + + G + I+ + T+ + +E K
Sbjct: 164 GAGPTGVELSGIFAEMKQNIMKKDYPELSQSDLGDIYLIDGQKTVLAPMSKKAQEYTEKA 223
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L + V+L +G FV+ D +D+ +L +
Sbjct: 224 LLKKGVKLKMGVFVK-------------------------DFVNDEVVLS--------DG 250
Query: 358 QIFEADLVLWTVG-SKPLLPHVEPPNNRLHDLPLNARGQ-AETDETLCVKGHPRIFALGD 415
I EA ++W G S ++ D RG+ +TD ++G I+A+GD
Sbjct: 251 TILEARNLIWAAGVSAKTFKGID-------DKEYLGRGKRMKTDAYNKMEGFDNIYAIGD 303
Query: 416 SSALRDSSGRP--LPATAQVAFQQADFAGWNLWAAIND---RPLLPFRFQNLGEMMILGR 470
S + P P AQVA QQAD NL A +N+ +P PF + + G M I+GR
Sbjct: 304 SCIMTADPNYPEGHPQLAQVAIQQAD----NLVANMNNDFQKP-KPFSYVDKGSMAIIGR 358
Query: 471 NDA 473
N+A
Sbjct: 359 NEA 361
>gi|418515545|ref|ZP_13081725.1| NADH dehydrogenase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418523025|ref|ZP_13089052.1| NADH dehydrogenase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410700500|gb|EKQ59053.1| NADH dehydrogenase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410707843|gb|EKQ66293.1| NADH dehydrogenase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 430
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 165/410 (40%), Gaps = 59/410 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + + ++GGGF GL+ L DD ++ LVD+ +F+P+LY++ + +
Sbjct: 5 PSQALLHLVVVGGGFAGLWATRAL------DDPGIRITLVDRQNHHLFQPLLYQVATAGL 58
Query: 135 DAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
A +IA +L V+ V + PS V+L G + YD
Sbjct: 59 SAPDIAAPLRHILREQRNVEVLLGDVTDIAPSRR-------------EVVLADGGTLGYD 105
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
L+L+ GA AE A TL DA + RKL +E E + + +
Sbjct: 106 MLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSF 165
Query: 248 AVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
AVVG G +GVELA T++E R K + I+ R+A ++++ A
Sbjct: 166 AVVGGGPTGVELAGTLAEIARHTLKNEFRHID------------PRQARVRLVEAGP--- 210
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
R + F + + + + ++ + ++ L A V
Sbjct: 211 ---------RVLPSFPEDLTAKARKQLERLGVEVHTGTPVTQIDALGYQLGDTFVPARTV 261
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G P R +PL+ G+ + L V GHP IF GD ++++ GR
Sbjct: 262 VWAAGV------AASPLARTLGVPLDRAGRVLVEADLSVPGHPDIFVGGDLASVQ-QDGR 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
P+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 315 PVPGVAPAAKQMGKHIAKAIRARQRGQTAPAFRYQDYGNLATIGRMAAIV 364
>gi|373855953|ref|ZP_09598699.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus sp. 1NLA3E]
gi|372455022|gb|EHP28487.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus sp. 1NLA3E]
Length = 405
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 182/415 (43%), Gaps = 74/415 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K +I +LG G+GGL T +L+ ++ ++ ++ LV++++ L+E +G +
Sbjct: 2 RKSKIVVLGAGYGGLMTVTKLQKMLGVNE--AEITLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +++ + V F +D C + VN T V+LE+ + YD+LV+
Sbjct: 60 RVRYPIDNVIERSKVHFIQD-----CAIE---VN-----TAEKKVILENREL-SYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----GKDSLIRVAVVGC 252
+LG E + + G +FAF + +A R R+ EL+ + KD + + V G
Sbjct: 106 ALGGESETFGIKGLKDFAFSIVNV-NAARQIREHIELQFATYQTEEEKKDERLTIVVGGA 164
Query: 253 GYSGVELAATVSERLEE--------KGIVQAINVETT--ICPTGTPGNREAALKVLSARK 302
G++G+E ++ R+ E + V+ I VE + P P A+ L +
Sbjct: 165 GFTGIEFLGEMANRIPELCREYDVEQNRVKLICVEAAPMVLPGFDPELVSYAVAQLEKKG 224
Query: 303 VQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
VQ +G ++ C PE G I +A +N E + +
Sbjct: 225 VQFRIGTAIKEC------------TPE-GII--VAKSEN---------------EVEEIK 254
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-AL 419
A V+W G + N+ + + + RG+ + L V G IF +GD S +
Sbjct: 255 AGTVVWAAGVRG--------NSIIEKSGIESMRGRVKIQLDLRVPGSDHIFVIGDCSLMI 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDA 473
+ RP P TAQ+A QQ + NL A + D+ L F+ G + LG +DA
Sbjct: 307 NEEINRPYPPTAQIAMQQGEVCARNLAALVRDKAELESFKPDIKGSVCSLGHDDA 361
>gi|440228698|ref|YP_007335782.1| NADH dehydrogenase protein [Rhizobium tropici CIAT 899]
gi|440040406|gb|AGB73236.1| NADH dehydrogenase protein [Rhizobium tropici CIAT 899]
Length = 420
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 185/445 (41%), Gaps = 60/445 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWE 138
R+ I+GGGF GL A +D K P + ++D+ +F+P+LY++ + + E
Sbjct: 4 RVVIVGGGFAGLQLA--------KDLKCPNLSITIIDRRNHHLFQPLLYQVATTVLATSE 55
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA + KD LL + +GV+ V L+ G + YD LVL+
Sbjct: 56 IAWPIRAVFRGR-----KDVTTLL--GEVVGVD-----VEKRLVSLKGGHAIPYDTLVLA 103
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGC 252
GA FA LEDA + R+L +ELE + L+ +++G
Sbjct: 104 TGARHAYFGRDEWEPFAPGLKALEDATTIRRRLLLAFEKAELETDPQARAGLLTFSIIGA 163
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVE+A ++E + + N++TT SAR + + G +
Sbjct: 164 GPTGVEMAGIIAELARRTLVEEFRNIDTT-----------------SARILLVEAGPRIL 206
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
I F ++ Q ++ ++ + + + + + + + + V+W G +
Sbjct: 207 PI-----FHEALSQYAERSLASMGVEVRTGRPVTDCTEEGISIGDEFVPSRTVIWAAGVQ 261
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
V + G+A L V HP IF +GD+++++ G +P A
Sbjct: 262 ASKAAVWVGAE------TDRAGRAIVQPDLTVFEHPDIFVVGDTASVKTGEGMLVPGIAP 315
Query: 433 VAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 491
A QQ + + A + R PF++++LG + +G + A + + L G I
Sbjct: 316 AAKQQGKYVAQVIKARLKQRSAPPPFKYRHLGNLATIGPSSAVIDFGRLR---LKGSIAW 372
Query: 492 SARKLAYLIRLPTDEHRLKVGVSWL 516
LA++ L R+ V +SWL
Sbjct: 373 WIWGLAHIYFLIGTRSRMAVALSWL 397
>gi|325964264|ref|YP_004242170.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470351|gb|ADX74036.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
phenanthrenivorans Sphe3]
Length = 417
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 190/461 (41%), Gaps = 77/461 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ ++G GF G+ A L K +VLL+D + F+P+LY++ + +V IA
Sbjct: 6 QVIVIGAGFAGISAAKEL------GRKGVRVLLIDSNNYHQFQPLLYQVATSQVGVSAIA 59
Query: 141 PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ V+ V + ++H TV G LV+++
Sbjct: 60 RPIRSVFRRLRNVRVLTAEVAAIDAANH-------------TVTTAGGDTFRAGILVVAV 106
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIRVAVVGCGYSGVE 258
GA P +PGA E A P ++ DA R+ ++ L+R + + + + VVG G +GVE
Sbjct: 107 GAVPNFFNIPGAEEHALPLYSVVDATRLGTSVTRLLDRADREPGTPVDMVVVGGGPTGVE 166
Query: 259 LAATVSER------------LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
A ++E L + V +++ T+ +P ++E + L+ VQL
Sbjct: 167 TAGALAEHIKFVVTKYFSPELASRCRVHLVDMLPTVLTMFSPKSQEYTWRRLAKIGVQLH 226
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
+G V +R G V + IP +V+
Sbjct: 227 MGVSVAEVRDDG-----VTLADGTDIPG----------------------------GIVV 253
Query: 367 WTVGSKPLLPHVEPPNNRL--HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 424
W G K N L LPL G+ + L V G ++ +GD++ + DS+G
Sbjct: 254 WAGGLK--------GGNLLAGSGLPLGKGGRVDVGTDLAVPGVEGVYVVGDAANITDSTG 305
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
LP VA Q +A N+ A +N PFR+ + G M ++GR AAV+ + +
Sbjct: 306 AKLPQLGSVAQQAGKWAARNIHAELNGGTRQPFRYTDKGYMAMIGRG-AAVAELGRKRLQ 364
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 525
L G + + L +L L + +++ SWL + S A
Sbjct: 365 LQGLLAFLSWLLVHLALLSGFQQKVRALFSWLNGYVLHSPA 405
>gi|332143220|ref|YP_004428958.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str. 'Deep
ecotype']
gi|410863414|ref|YP_006978648.1| respiratory NADH dehydrogenase II [Alteromonas macleodii AltDE1]
gi|327553242|gb|AEA99960.1| Respiratory NADH dehydrogenase II [Alteromonas macleodii str. 'Deep
ecotype']
gi|410820676|gb|AFV87293.1| respiratory NADH dehydrogenase II [Alteromonas macleodii AltDE1]
Length = 430
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 158/375 (42%), Gaps = 47/375 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCP-- 164
K+ ++ LVD+S ++KP+L+E+ +G +D +A + ++ ++ +C
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYA---IHAAAHHYRFQLGEMCSLN 84
Query: 165 SDHLGVN-GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
+D ++ P+ G VL E V YD LVL++G+ PG AE + +L+
Sbjct: 85 ADAQTISLAPLVDEEGTQVLPERE--VHYDQLVLAIGSVSNDFGTPGVAEHCYFLDSLKQ 142
Query: 224 ACRVDRK-LSELERRNF--GKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280
A R R L++L R N KD+ VA+VG G +G ELAA Q +V
Sbjct: 143 AERFHRALLNQLIRINQQEDKDARFEVAIVGAGATGTELAA------------QLHHVAN 190
Query: 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 340
G P + LK+ + +L + A+ + D
Sbjct: 191 LSKAYGMPEMSASRLKITIVEAGERIL----------PALPERIANSARKALHKLGVDIK 240
Query: 341 SDKYILELQPAIKGLESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQ 395
+ E KGL ++ +ADL++W G V+ P+ +L N Q
Sbjct: 241 EQTMVAEADA--KGLITKDGGRIDADLMVWAAG-------VKAPDFITQLDLFETNRANQ 291
Query: 396 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 455
D+ L + I+ LGD + +G+ +P AQ A Q AD G N+ A +
Sbjct: 292 ILVDKQLRSSTNKNIWVLGDCCGFQQENGKWVPPRAQSAHQMADIVGHNITALFTQKETK 351
Query: 456 PFRFQNLGEMMILGR 470
F +++ G ++ L +
Sbjct: 352 AFTYKDYGSLVHLSK 366
>gi|242242231|ref|ZP_04796676.1| NADH dehydrogenase [Staphylococcus epidermidis W23144]
gi|242234326|gb|EES36638.1| NADH dehydrogenase [Staphylococcus epidermidis W23144]
Length = 424
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 106/419 (25%), Positives = 178/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 16 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 71
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL KD+V + + N T G
Sbjct: 72 LHEASAGTIN-------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG---- 120
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 121 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 175
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 176 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 227
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 228 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 271
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++GH IF +GD
Sbjct: 272 EKQQLEAGTSVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGD 324
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 325 CSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGTNDG 383
>gi|336394136|ref|ZP_08575535.1| pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
farciminis KCTC 3681]
Length = 395
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 173/405 (42%), Gaps = 71/405 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I +LG G+GGL A L Q+ L+D++E+ V K L+ + +G A ++
Sbjct: 3 HILVLGAGYGGLRAA---RDLAKSTPAGTQIDLIDKNEKHVEKTALHTIAAGTNRADAVS 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L + V F K V L + TV + YD++V+SLG
Sbjct: 60 FDVRSVLP-SNVNFIKATVSKLDLDNK-------------TVEFSDHEDITYDYIVVSLG 105
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFGKDSLIRVAVVGCGYSG 256
+ + GA+E A LE A + ++ ++ ++ N D + + V G G++G
Sbjct: 106 FRSEDFGLEGASENALILQDLETAQNIYKTINQNIANYKKSNDPAD--LSIIVCGAGFTG 163
Query: 257 VELAATVSER---LEEKGIVQAINVE-----TTICPTGTPGNREAALKVLSARKVQLVLG 308
VE+ + + L+ K V I V T I P A+ L ++L+ G
Sbjct: 164 VEILGELVDTVKILKAKYEVPEIKVTCLEMATRILPMFDENLATYAVDYLDKNGIKLLTG 223
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
A +K+ E ++ + D +++K + E ++WT
Sbjct: 224 -------------AKIKKIEPKSV--VYMDGDTEKSV---------------EGSTIIWT 253
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALR-DSSGRP 426
VG ++ + D ++AR + T E L ++ HP + +GD SA+ RP
Sbjct: 254 VGV--------SGSDVIKDSGIDARRNRVMTTEFLNLEAHPEAYFIGDDSAIIPKGEERP 305
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
P T Q+A + A +N+ AA+N + L PF + ++G + LG+N
Sbjct: 306 YPTTGQLATAEGSGAAFNIAAALNGKDLKPFIYHSMGTVASLGQN 350
>gi|167574168|ref|ZP_02367042.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia oklahomensis C6786]
Length = 430
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 167/401 (41%), Gaps = 37/401 (9%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ RI I+GGG GL A RL + + + QV L+D+S ++KPML+ + +G D
Sbjct: 2 HQTTRIVIVGGGIAGLLLATRLGDALGRSGRA-QVTLIDKSATHIWKPMLHTIAAGTRDV 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ + + G + ++ L + + + G V+ VEYD L+
Sbjct: 61 QQQQVIYLAHARDHGFNYQPGEMEGLDRNARVVKLAELRSPSGEIVI--GPRTVEYDVLI 118
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG+ PG + + A + L ++ +S +RV++VG G +G
Sbjct: 119 LALGSRANDFRTPGVLDHCHFIDSQAQAEVFNEALRIRIFQSVVTNSPLRVSIVGAGATG 178
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELAA +S LE G P R +L L + R
Sbjct: 179 VELAAELSRLLE------------VAASYGDPHIRS-----------RLNLTLYESAPRV 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLL 375
+ F +V + + +I + + +P ++ + ADL++W G
Sbjct: 216 LTAFPPAVSESSEAQLRHIGFTVRTGTRVTAAEPDGLRLGDGSQQPADLMVWAAG----- 270
Query: 376 PHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQ 432
V+ P+ ++L + N Q TL + +FALGD S L + RPL TAQ
Sbjct: 271 --VKAPDFLSKLDGIESNRSNQITVRPTLQSQDDDTLFALGDCSTLTLAGNERPLAPTAQ 328
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
VA QQA +L A + L F FQ+ G ++ L +A
Sbjct: 329 VATQQAQHLAKHLPAWLGGGSLPDFAFQDFGALVSLSDYNA 369
>gi|294626533|ref|ZP_06705132.1| NADH dehydrogenase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292599223|gb|EFF43361.1| NADH dehydrogenase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 430
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 164/410 (40%), Gaps = 59/410 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + + ++GGGF GL+ L DD ++ LVD+ +F+P+LY++ + +
Sbjct: 5 PSQAPLHLVVVGGGFAGLWATRAL------DDPGIRITLVDRQNHHLFQPLLYQVATAGL 58
Query: 135 DAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
A +IA +L V+ V + P V+L G + YD
Sbjct: 59 SAPDIAAPLRHILREQRNVEVLLGDVTDIAPGRR-------------EVVLADGSTLGYD 105
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
L+L+ GA AE A TL DA + RKL +E E + + +
Sbjct: 106 MLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSF 165
Query: 248 AVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
AVVG G +GVELA T++E R K + I+ R+A ++++ A
Sbjct: 166 AVVGGGPTGVELAGTLAEIARHTLKNEFRHID------------PRQARVRLVEAGP--- 210
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
R + F + + + + ++ + ++ L A V
Sbjct: 211 ---------RVLPSFPEDLTAKARKQLERLGVEVHTGTPVTQIDALGYQLGDTFVPARTV 261
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G P R +PL+ G+ + L V GHP IF GD ++++ GR
Sbjct: 262 VWAAGV------AASPLARTLGVPLDRAGRVLVEANLSVPGHPDIFVGGDLASVQ-QDGR 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
P+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 315 PVPGVAPAAKQMGKHIAKAIRARHRGQTAPAFRYQDYGNLATIGRMAAIV 364
>gi|296117250|ref|ZP_06835842.1| NADH dehydrogenase [Gluconacetobacter hansenii ATCC 23769]
gi|295976203|gb|EFG82989.1| NADH dehydrogenase [Gluconacetobacter hansenii ATCC 23769]
Length = 426
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 165/394 (41%), Gaps = 37/394 (9%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K R+ I+GGG GL A RL + + + ++ LVD+S V+KPML+ +G
Sbjct: 3 QKFRVVIVGGGIAGLALATRLGDSIGRSGRA-EITLVDKSFAHVWKPMLHCFAAGTAANE 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + F+ + L + P+ G +L E L EYD LVL
Sbjct: 62 NDRISFLSQASRHHFDFWPGEISDLDRAAKSITLAPVVEPSGEVILEERTL--EYDALVL 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
S+G+ PG A+ L +A + + + FG + + +A+VG G +G
Sbjct: 120 SIGSRANDFGTPGVAQHCLFIDNLVEANGFNERFRMELLKAFGNNEELDIAIVGGGATGT 179
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
+LAA + + L+ + + G + LK+ +L F +
Sbjct: 180 QLAAELHKALD-------------LASLYSFGKKPPTLKITLLEAGPRILPAFPESVSAA 226
Query: 318 G--EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
+ EA ++ A+ + A +K ++L+ + A L +W G K
Sbjct: 227 AQKQLEAIGVTVQTSAMVSGADEKG---FLLK--------DGTRIPATLRVWAAGVKA-- 273
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
P V R L L+ GQ E TL + IFA+GD + + + +P+ TAQVA
Sbjct: 274 PDV---TRRFAGLKLSRSGQLEVRPTLQLLEDDNIFAMGDCAFIAE---KPVAPTAQVAR 327
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
QQA + IN L PF F N G ++ LG
Sbjct: 328 QQAHHLARYMPRWINGGQLQPFAFNNKGAVVALG 361
>gi|418411397|ref|ZP_12984665.1| NADH dehydrogenase-like protein [Staphylococcus epidermidis
BVS058A4]
gi|410892941|gb|EKS40732.1| NADH dehydrogenase-like protein [Staphylococcus epidermidis
BVS058A4]
Length = 428
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 106/419 (25%), Positives = 178/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 20 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 75
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL KD+V + + N T G
Sbjct: 76 LHEASAGTIN-------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG---- 124
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 125 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 179
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 180 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 231
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 232 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 275
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++GH IF +GD
Sbjct: 276 EKQQLEAGTSVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGD 328
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 329 CSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 387
>gi|424885046|ref|ZP_18308657.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|424886426|ref|ZP_18310034.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393175777|gb|EJC75819.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393176808|gb|EJC76849.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
Length = 421
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 101/428 (23%), Positives = 178/428 (41%), Gaps = 78/428 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 KITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 EVTGVD-----SGAKTVSLRNGMTLGYDTLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R++ +E+E +D+L+ +VG G +GVELA ++E
Sbjct: 124 --LKTLEDATTIRRRVLLAFEKAEMESDPAVRDALLTFTIVGAGPTGVELAGIIAELAHF 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
+ N++T RK ++VL R + F +
Sbjct: 182 TLPKEFRNIDT--------------------RKTRVVL--VEAGPRALPSFAEELSAYAE 219
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389
A+ + + + + + E + + ++W G P R + P
Sbjct: 220 KALEKLGVEIHLGRAVTECSADGVKIGETFVASRTIVWAAGV------TASPAARWLNAP 273
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449
+ G+ ++ L G P +F +GD++++ G+P+P A A QQ + + A +
Sbjct: 274 ADRAGRVAVEKGLSAPGLPDVFVIGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRARL 333
Query: 450 NDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 508
+ +P PFR+++ G + +G++ A + ++ L G I LA++ L R
Sbjct: 334 SGKPAPGPFRYRHQGSLATIGQSAAIIDFGRIK---LKGWIAWWIWGLAHIYFLIGTRSR 390
Query: 509 LKVGVSWL 516
V SWL
Sbjct: 391 FSVAWSWL 398
>gi|323529238|ref|YP_004231390.1| NADH dehydrogenase [Burkholderia sp. CCGE1001]
gi|407710078|ref|YP_006793942.1| NADH dehydrogenase [Burkholderia phenoliruptrix BR3459a]
gi|323386240|gb|ADX58330.1| NADH dehydrogenase [Burkholderia sp. CCGE1001]
gi|407238761|gb|AFT88959.1| NADH dehydrogenase [Burkholderia phenoliruptrix BR3459a]
Length = 448
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 166/384 (43%), Gaps = 47/384 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L +
Sbjct: 33 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRASR 92
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
GP+ G +L E L EYD LV+++G+ V GA EF+ T+ A R
Sbjct: 93 RLTLGPVLDDDGAELLPERQL--EYDTLVIAIGSTTAFFGVKGAPEFSLALDTVSQAERF 150
Query: 228 DRKLSELERR---------------NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
++L R + + I+VA+VG G +GVEL+A E +
Sbjct: 151 RKRLIAACMRAEHQAHEPVESGPGTSPSSEPRIQVAIVGGGATGVELSA------ELRNT 204
Query: 273 VQAINVETTICPTGTPGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGA 331
Q ++ L L R V +VL R + + V +
Sbjct: 205 AQVLSAY--------------GLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAEL 248
Query: 332 IPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390
+ + + + + E+ P I+ + ADL +W G + P + ++L LP+
Sbjct: 249 LTKLGVKLMTSETVAEVAPGIIRTASGKTVRADLTVWAAGIRA--PAIL---SQLDGLPV 303
Query: 391 NARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAI 449
N GQ TL + +FALGD +A + + +P AQ A QQA F L A +
Sbjct: 304 NRLGQLNVRRTLQTEIDDNVFALGDCAACPWPGNEKNVPPRAQAAHQQASFLLKALAARL 363
Query: 450 NDRPLLPFRFQNLGEMMILGRNDA 473
++RPL F +++ G ++ LG A
Sbjct: 364 DNRPLPEFTYRDFGSLVSLGHFSA 387
>gi|238027826|ref|YP_002912057.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia glumae BGR1]
gi|237877020|gb|ACR29353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia glumae BGR1]
Length = 430
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 163/406 (40%), Gaps = 49/406 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+GGG GL A +L + + + QV L+D+S ++KPML+ + +G D
Sbjct: 3 RTKRIVIVGGGIAGLLLATKLGDTLGRTGRA-QVTLIDRSATHIWKPMLHTIAAGTRDVQ 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------E 191
+ + G + P + G++ + SG +V E
Sbjct: 62 QQQVIYLAHAREHGFHY--------QPGEMEGLDRDARTVRLAELRAPSGEVVVGARSVE 113
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
YD L+L+LG+ PG E + A + L ++ +S +RV++VG
Sbjct: 114 YDVLILALGSRANDFGTPGVLEHCHFIDSQAQAEAFNEALRIRVFQSVVSNSPLRVSIVG 173
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELAA +S LE G G P R +L L +
Sbjct: 174 AGATGVELAAELSRLLEVAG------------SYGDPAIRS-----------RLNLTLYE 210
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVG 370
R + F A+V + + I + I +P L + ADL++W G
Sbjct: 211 SAPRILAAFPAAVSESSEAQLRRIGFSVRTGTRITAARPDGFALGDGSAQPADLMVWAAG 270
Query: 371 SKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPL 427
V+ P +L + N Q +L IFALGD S L + RPL
Sbjct: 271 -------VKAPEFLGKLDAITSNRSNQICIRPSLQSLDDDHIFALGDCSTLTLPGAERPL 323
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
TAQVA QQA F +L ++ L F F + G ++ L +A
Sbjct: 324 APTAQVATQQARFLARHLPDWLSTGKLPDFAFHDFGALVSLSDYNA 369
>gi|52424236|ref|YP_087373.1| Ndh protein [Mannheimia succiniciproducens MBEL55E]
gi|52306288|gb|AAU36788.1| Ndh protein [Mannheimia succiniciproducens MBEL55E]
Length = 443
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 176/418 (42%), Gaps = 63/418 (15%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ V+LVD+++ ++KP+L+E+ +G +D+ A + N F + + + ++
Sbjct: 28 QRANVVLVDRNQTHLWKPLLHEVATGVLDSETDAVSYRAHAHNHYFNFEQGSITRIDRTN 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE + A R
Sbjct: 88 KYVELAPVTGQEGDVLVVARR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDSPNQALR 145
Query: 227 VDRKLSEL-----------------ERRNFGKDSLIRVAVVGCGYSGVELAATV---SER 266
K+ EL ++ +D + +A+VG G +GVEL+A + ++
Sbjct: 146 FQHKMLELFLKFSENNALEEIGEDDSKQRLVQDGKVNIAIVGGGATGVELSAELFNAAQH 205
Query: 267 LEEKGI--VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 324
L G +Q+ +++ T+ G + L L R +SV
Sbjct: 206 LSSYGYGKIQSGHLQVTLIEAG-----DRILPALPER------------------ISSSV 242
Query: 325 KQPESGAIPNIAADKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 383
+Q + N+ + I E + + E + ADL++W G + V
Sbjct: 243 QQE----LENLGVTVKTGTMITEATEKCLITKEGEEINADLMVWAAGIR-----VSAITQ 293
Query: 384 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 443
+ L +N Q TL IFA+GD + L G+P+P Q A Q A G
Sbjct: 294 QFDGLEVNRINQLNVKNTLQTTVDDSIFAIGDCAFLLQKDGKPVPPRGQAANQMATICGQ 353
Query: 444 NLWAAINDRPLLPFRFQNLGEMMILGRNDA--AVSPSFVEGVTLDGPIGHSARKLAYL 499
N+ A N++PL F + + G ++ L + A ++ +T++G + +LAY+
Sbjct: 354 NIVALFNNKPLKDFHYFDKGSLVSLSKFTALGNITTGKRSSLTIEGRLA----RLAYI 407
>gi|389873736|ref|YP_006381155.1| NADH dehydrogenase [Advenella kashmirensis WT001]
gi|388538985|gb|AFK64173.1| NADH dehydrogenase [Advenella kashmirensis WT001]
Length = 390
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 149/371 (40%), Gaps = 73/371 (19%)
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE 185
L+E+ SG +D +A L + G F P + G++ H V E
Sbjct: 5 LHEVASGTLDIHREGLSYAMLAKDHGFTF--------VPGEMDGIDRQARSIHVKAVYNE 56
Query: 186 SGLI-----VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSEL----E 235
+ + YD LVL++G+ PGA E+A + E A + K L EL +
Sbjct: 57 GEEVFAARDLSYDTLVLAVGSRSNFFNTPGAEEYATALDSTEQAEKFRLKFLRELVAADQ 116
Query: 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI--VQAINVETTICPTGTPGNRE- 292
R+ + +A+VG G +GVELAA + E + G + +N E I T G+
Sbjct: 117 RKKTDPAHSLNIAIVGGGATGVELAAELLEAGKNLGFYGINELNPEEDIHITLLEGSSRI 176
Query: 293 ----------AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 342
AA ++L R + + V ASV++ D N +
Sbjct: 177 LAALPEKTSAAATRLLKERGITVKTSVLV----------ASVQEKS-------LTDSNDN 219
Query: 343 KYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 402
KY ADL +W G K P L N Q D+TL
Sbjct: 220 KY----------------PADLTVWAAGIKA------PAFLTELGLETNKINQVIADKTL 257
Query: 403 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL--LPFRFQ 460
C P I+A+GD + + GR LPA AQVA QQAD+ L A IN PF F+
Sbjct: 258 CTS-DPAIYAMGDCAQVEWEPGRYLPARAQVAHQQADYLIGELSARINGTASSGKPFAFK 316
Query: 461 NLGEMMILGRN 471
+ G ++ +G N
Sbjct: 317 DYGSLVSVGHN 327
>gi|57866477|ref|YP_188119.1| NADH dehydrogenase [Staphylococcus epidermidis RP62A]
gi|418611315|ref|ZP_13174405.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU117]
gi|418626644|ref|ZP_13189241.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU126]
gi|81819427|sp|Q5HQM1.1|Y527_STAEQ RecName: Full=NADH dehydrogenase-like protein SERP0527
gi|57637135|gb|AAW53923.1| NADH dehydrogenase, putative [Staphylococcus epidermidis RP62A]
gi|374823401|gb|EHR87397.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU117]
gi|374831418|gb|EHR95158.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU126]
Length = 402
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G E AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV- 215
Query: 308 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y V+ + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSV 260
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
WT G + H+ + RG+ + L ++GH IF +GD SA + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRVINKQDLTIEGHNDIFVIGDCSAFIPAGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|294665100|ref|ZP_06730404.1| NADH dehydrogenase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605142|gb|EFF48489.1| NADH dehydrogenase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 430
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 164/410 (40%), Gaps = 59/410 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + + ++GGGF GL+ L DD ++ LVD+ +F+P+LY++ + +
Sbjct: 5 PSQAPLHLVVVGGGFAGLWATRAL------DDPGIRITLVDRQNHHLFQPLLYQVATAGL 58
Query: 135 DAWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
A +IA +L V+ V + P V+L G + YD
Sbjct: 59 SAPDIAAPLRHILCEQRNVEVLLGDVTDIAPGRR-------------EVVLADGSTLGYD 105
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
L+L+ GA AE A TL DA + RKL +E E + + +
Sbjct: 106 MLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSF 165
Query: 248 AVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
AVVG G +GVELA T++E R K + I+ R+A ++++ A
Sbjct: 166 AVVGGGPTGVELAGTLAEIARHTLKNEFRHID------------PRQARVRLVEAGP--- 210
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
R + F + + + + ++ + ++ L A V
Sbjct: 211 ---------RVLPSFPEDLTAKARKQLERLGVEVHTGTPVTQIDALGYQLGDTFVPARTV 261
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G P R +PL+ G+ + L V GHP IF GD ++++ GR
Sbjct: 262 VWAAGV------AASPLARTLGVPLDRAGRVLVEADLSVPGHPDIFVGGDLASVQ-QDGR 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
P+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 315 PVPGVAPAAKQMGKHIAKAIRARHRGQTAPAFRYQDYGNLATIGRMAAIV 364
>gi|256833138|ref|YP_003161865.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Jonesia
denitrificans DSM 20603]
gi|256686669|gb|ACV09562.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Jonesia denitrificans DSM 20603]
Length = 479
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 202/480 (42%), Gaps = 78/480 (16%)
Query: 63 SEDESASQTYTWPDKKK-PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
+++ + ++ T P +K PRI +LGGG GLY+A RL + + ++ ++++D
Sbjct: 8 TDNAAETKATTTPRPRKVPRIVVLGGGSVGLYSARRLRQRLGK--REAAIVVIDPRPYMT 65
Query: 122 FKPMLYELLSGEV-DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGG 180
+ P L E+ +G + D +AP L G+ RV + +D T
Sbjct: 66 YAPFLPEVAAGSISDRDVVAPHNRAL---KGIDTLMGRVTQIRHNDR---------TVEV 113
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE---LERR 237
T + + YD L++ LG+ ++ +PG AE A F +E+A V + + +
Sbjct: 114 TPEIGEPYEITYDHLIVGLGSVSRVLPIPGLAENAIGFKNVEEAVAVRNHVLDRIIVAAS 173
Query: 238 NFGKD---SLIRVAVVGCGYSGVELAATVSERLE---------EKGIVQAINVETT--IC 283
+ KD L+ VG G++G E A + + + E G ++ + +E + I
Sbjct: 174 TWDKDLRQRLLTFTFVGGGFAGCEAIAEIEDMAKSAIKQYPTIEPGDLRFVMIEGSNRIL 233
Query: 284 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343
P T + AL+ + R ++ L F+ D
Sbjct: 234 PELTEEMAQYALEEMQKRGIEFHLSTFLSSC--------------------------EDG 267
Query: 344 YILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDET 401
+++ G+E F+ D ++WT G K P++ + P +++ + N + Q E
Sbjct: 268 HVV----TSTGVE---FDTDTIVWTAGVKAHPVIGESDLPTDKMGRVTTNTKLQVIDAEG 320
Query: 402 LCVKGHPRIFALGDSSALRDS----SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 457
+ P +A GD +A+ D +G +P AQ A +QA G NL + + L +
Sbjct: 321 TVI---PDAYAAGDCAAVPDVHGGINGFCVP-NAQHAVRQAKLLGDNLASVLRSGELKEY 376
Query: 458 RFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 517
+NLG + LG + + L G A + +L +PT RL++ W++
Sbjct: 377 SHKNLGTVASLGLHKGVA--ILFGSIKLRGFFAWCAHRGYHLYAMPTISRRLRITTGWVS 434
>gi|427711426|ref|YP_007060050.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
gi|427375555|gb|AFY59507.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
Length = 443
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 100/447 (22%), Positives = 174/447 (38%), Gaps = 60/447 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GLY A L +V L+D+ +F+P+LY++ +G V I+
Sbjct: 7 HVVIVGGGFAGLYAAKSL------GQAPVKVTLIDKRNFHLFQPLLYQVATGSVSPANIS 60
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P A L VQ + V P + G + YD LV++
Sbjct: 61 SPLRAILNRYKNVQVLLEEVTGFDPQTQ--------------TIKTKGREIPYDSLVVAT 106
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCG 253
G + A T+EDA + R++ +E E + + + +VG G
Sbjct: 107 GVSHHYFGNDHWQQTAPGLKTVEDALEIRRRIFMAFEAAEKEMDPVKRQAWLTFVIVGGG 166
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+GVELA ++E N++T RE + +L
Sbjct: 167 PTGVELAGAIAELAFATLKQDFRNIDT----------RETKILLLEGLD----------- 205
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVLWTV 369
R + + A + ++ + + + + I G E + A +LW
Sbjct: 206 -RILPPYPADLSAKAEASLSKLGVTVKTRTLVTNITDNIVTTKHGEEVEKIAAHTILWAA 264
Query: 370 GSKPL-LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G K L V + L+ G+ + L + +P I+ +GD + +G PLP
Sbjct: 265 GVKASGLGRVLAEST---GASLDRVGRVIVEPDLSLPNYPNIYVIGDLANYAHQNGNPLP 321
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
A VA Q+ ++ + A + PL F + + G + ++G+N+A V+ + G GP
Sbjct: 322 GIAPVAIQEGEYLAKLIRAKVKGEPLPTFNYDDAGSLAVIGQNEAVVN---LWGWKFSGP 378
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ A++ L +H+L V W
Sbjct: 379 LAWLIWVFAHIYYLIEFDHKLVVMTQW 405
>gi|84625705|ref|YP_453077.1| NADH dehydrogenase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84369645|dbj|BAE70803.1| NADH dehydrogenase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 430
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 164/410 (40%), Gaps = 59/410 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + + ++GGGF GL+ L DD ++ L+D+ +F+P+LY++ + +
Sbjct: 5 PSQAPLHLVVVGGGFAGLWATRAL------DDPNIRITLIDRQNHHLFQPLLYQVATAGL 58
Query: 135 DAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
A +IA +L V+ V + PS V+L G + YD
Sbjct: 59 SAPDIAAPLRHILREQRNVEVLLGDVTDIAPSRR-------------EVVLADGNTLGYD 105
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
L+L+ GA AE A TL DA + RKL +E E + + +
Sbjct: 106 MLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSF 165
Query: 248 AVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
AVVG G +GVELA T++E R K + I+ + +A ++++ A
Sbjct: 166 AVVGGGPTGVELAGTLAEIARHTLKNEFRHIDPQ------------QARVRLVEAGP--- 210
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
R + F + + + + ++ + + L A V
Sbjct: 211 ---------RVLPSFPEDLTDKARKQLQRLGVEVHTSAPVTHIDALGYQLGDTFVPARTV 261
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G P R +PL+ G+ + L V GHP IF GD ++++ GR
Sbjct: 262 VWAAGV------AASPLARTLGVPLDRAGRVLVEADLSVPGHPEIFVGGDLASVQ-QDGR 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
P+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 315 PVPGVAPAAKQMGKHIAKAIRARHRGQTAPAFRYQDYGNLATIGRMAAIV 364
>gi|386774086|ref|ZP_10096464.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium
paraconglomeratum LC44]
Length = 457
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 111/424 (26%), Positives = 167/424 (39%), Gaps = 87/424 (20%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILGGG G+ TA L + + + +VD + P L E+ +G +D
Sbjct: 8 KPHVLILGGGSVGMTTASELRKTLGAE---VAITVVDPRPYMTYAPFLPEVGAGSIDPRN 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLV 196
+ +L TG + V + ++H V V E G L + YD+LV
Sbjct: 65 VLAPLRKIL--TGTKVVTGSVAAIRSAEHTVV-----------VDTEEGEQLEISYDYLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVV 250
+ LGA P+L +PG AE A F +E+A V DR L+ L KD +R +
Sbjct: 112 VGLGAVPRLLPIPGLAENAIGFKQVEEAAAVRDRILANLAEAATTKDPKLRKRLLTFTFI 171
Query: 251 GCGYSGVELAA----TVSERLEEKGIVQAINVETT-------ICPTGTPGNREAALKVLS 299
G G++G E + V + L + A ++ I P T R L L
Sbjct: 172 GGGFAGGEAVSEAEDMVRDALRYYPDLHASDIRFVLVDGAPFIFPELTEDQRAYVLNQLR 231
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
R +++ L F+ E+G I D+
Sbjct: 232 ERGIEVKLETFLNSA-------------ENGVIKTSDGDE-------------------- 258
Query: 360 FEADLVLWTVGSKPLLPHVEPP--NNRLHDLPLNAR-----GQAETDETLCVKGH----P 408
FE DL++W G KP P + DLP+ G+ + L V G
Sbjct: 259 FETDLLVWNAGVKP-----NPVLFDEETSDLPIVTERGPLMGKVQVLPDLRVNGEDGPFD 313
Query: 409 RIFALGDSSALRD---SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 465
+FA GD +A+ D G+ P AQ A +QA N+ ++ RPL+ + +NLG
Sbjct: 314 DVFAAGDCAAVPDLASGEGKFCPPNAQHAVRQAKRLADNIARSVQGRPLVDYYHKNLGVF 373
Query: 466 MILG 469
LG
Sbjct: 374 ATLG 377
>gi|186473238|ref|YP_001860580.1| NADH dehydrogenase [Burkholderia phymatum STM815]
gi|184195570|gb|ACC73534.1| NADH dehydrogenase [Burkholderia phymatum STM815]
Length = 448
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 163/398 (40%), Gaps = 80/398 (20%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV LVD+ ++KP+L+E+ +G +D + +A G +F + + +G
Sbjct: 36 QVTLVDRYPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGEL--------IG 87
Query: 170 VNGPMACTHGGTVLLESGL------IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
++ + G VL + G ++EYD LV+++G+ V GA E++ T++
Sbjct: 88 IDRTVKTITLGRVLDDDGAELLPERVLEYDTLVIAIGSTTHFFGVKGAPEYSLALDTVQQ 147
Query: 224 ACRVDRKL-----------SELERRNFGKDSL---IRVAVVGCGYSGVELAATVS----- 264
A R ++L E N G S I+VA+VG G +GVEL+A +
Sbjct: 148 AERFRKRLIAACMRAEHQEHEPVESNPGASSTEPRIQVAIVGGGATGVELSAELRNTAQV 207
Query: 265 ------ERLEEKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
+L+ + V + +E I P A ++L V+L++G
Sbjct: 208 LSAYGLHKLDPRHDVGIVLIEAGPRILPALQERVSTATAELLQKLGVKLMVG------ET 261
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376
V E V + SG + ADL +W G K
Sbjct: 262 VAEVAPGVVRTASG---------------------------KTVRADLTVWAAGIK---- 290
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAF 435
P +L LP+N GQ E TL +FALGD +A + R +P AQ A
Sbjct: 291 -APPVLGQLDGLPVNRLGQLEVRRTLQTAIDENVFALGDCAACPWPGNERNVPPRAQAAH 349
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
QQA F L + RPL F +++ G ++ LG A
Sbjct: 350 QQASFLLRALGNRLEGRPLPEFTYRDFGSLVSLGHFSA 387
>gi|241205463|ref|YP_002976559.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240859353|gb|ACS57020.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 421
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 105/429 (24%), Positives = 177/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 KITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 EVTGVD-----SGAKTVSLRNGMTLSYDTLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R+L +E+E +D+L+ +VG G +GVELA ++E
Sbjct: 124 --LKTLEDATTIRRRLLLAFEKAEMESDPAVRDALLTFTIVGAGPTGVELAGIIAELAHF 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V RV F +
Sbjct: 182 TLPKEFRNIDT--------------------RKTRVVL---VEAGPRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + + K + E + + ++W G P R +
Sbjct: 219 QKALEKLGVEIHLGKPVTECNADGVKIGETFVASRTIVWAAGV------TASPAARWLGV 272
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
+ G+ ++ L G P +F +GD++++ G+P+P A A QQ + + A
Sbjct: 273 AADRAGRVVVEKDLSAPGLPEVFVVGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRAR 332
Query: 449 INDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
I+ +P PFR+ + G + +G++ A + ++ L G I LA++ L
Sbjct: 333 ISGKPTPAPFRYWHQGSLATIGKSAAIIDFGRIK---LKGWIAWWIWGLAHIYFLIGTRS 389
Query: 508 RLKVGVSWL 516
R V SWL
Sbjct: 390 RFSVAWSWL 398
>gi|416123933|ref|ZP_11595119.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Staphylococcus epidermidis FRI909]
gi|418632559|ref|ZP_13194989.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU128]
gi|420175300|ref|ZP_14681740.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM061]
gi|420193298|ref|ZP_14699152.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM023]
gi|319401781|gb|EFV89989.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Staphylococcus epidermidis FRI909]
gi|374832129|gb|EHR95849.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU128]
gi|394243762|gb|EJD89123.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM061]
gi|394260150|gb|EJE04970.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM023]
Length = 402
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G E AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV- 215
Query: 308 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y V+ + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSV 260
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
WT G + H+ + RG+ + L ++GH IF +GD SA + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGTNDG 361
>gi|302035420|ref|YP_003795742.1| respiratory NADH dehydrogenase [Candidatus Nitrospira defluvii]
gi|300603484|emb|CBK39814.1| respiratory NADH dehydrogenase [Candidatus Nitrospira defluvii]
Length = 439
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 163/374 (43%), Gaps = 56/374 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+ F+P+LY++ G + EIA +L Q ++ +L + +G+
Sbjct: 40 VTLIDRKNHHTFQPLLYQVALGVLSPGEIASSLRRIL-----QPARNLHTIL--GEVVGI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLEDACRV 227
+ V L G +V YD+L+L+ GA G E+ A T+EDA +
Sbjct: 93 D-----VAARNVQLNDGALVAYDYLILAAGAR---HAYFGHDEWEADAPGLKTIEDAVEI 144
Query: 228 DRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSE--RLEEKGIVQAINVE 279
+L +E + + G+D + AV+G G +GVELA +++ RL +AI+
Sbjct: 145 RSRLLLAFERAEQKAQLTGRDEPLSFAVIGGGPTGVELAGAIADLARLALAKDFKAIDT- 203
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
+ AR V+L G R +G + + + + + +
Sbjct: 204 ------------------MQAR-VRLYEG----ASRILGTYSEDSSRKAAEQLEQLGVEV 240
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 399
+D + +QP + + D+ +W G P P + + + G+ +
Sbjct: 241 CTDSLVRAVQPGRIRVGDEWIATDVTIWATGVAP------SPLAKTLGVATDRSGRVPIE 294
Query: 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
+ L V GH +F +GD +AL D++GRP+P A A QQ A N+ + RP PFR+
Sbjct: 295 QDLSVPGHREVFVIGDMAALVDANGRPVPGLAAAALQQGQQAARNILNDLQRRPREPFRY 354
Query: 460 QNLGEMMILGRNDA 473
+ G M +G + A
Sbjct: 355 VDRGSMATIGHHRA 368
>gi|167590364|ref|ZP_02382752.1| NADH dehydrogenase [Burkholderia ubonensis Bu]
Length = 452
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 107/407 (26%), Positives = 172/407 (42%), Gaps = 41/407 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL V Q V+LVD+S +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDAVGQRGLA-DVVLVDRSPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G QF + ++ + + + G + G +L V YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFQFVQGELQRVDRARRVATIGAVRDGDGSEILPPRD--VHYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----SELERRNFGKDSL----IRVAV 249
++G+ VPGA+ A P +E A RK ++ R G+ + + V
Sbjct: 132 AVGSVTNFFNVPGASRHALPLENVEQAEDFRRKFLAACAKANHRAEGQPDRRAPPVCINV 191
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR-KVQLVLG 308
+G G +GVELAA ++ +++ + + P +R+ ++++ +V VLG
Sbjct: 192 IGAGATGVELAAALTHAIDQLAAYRF----KALSP-----DRDVRIRLIEGGPRVLPVLG 242
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ V S + + AD AI + +D+ +W
Sbjct: 243 ERLSARMHAQLTALHVDVLTSTRVAEVGAD------------AIVTATGERLASDITIWA 290
Query: 369 VG-SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP- 426
G + P + + DL LN Q +TL P +FA GD +A +
Sbjct: 291 AGVAGPAMLRT------IGDLALNNANQVIVTDTLQTPDDPHVFAFGDCAACPSAGAHGF 344
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP AQVA QQA + ++ +P+ F F++ G ++ LG A
Sbjct: 345 LPPRAQVAHQQAVYLSHAFARRLSGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|407701777|ref|YP_006826564.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Black Sea 11']
gi|407250924|gb|AFT80109.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Black Sea 11']
Length = 430
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 160/381 (41%), Gaps = 59/381 (15%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ ++ LVD+S ++KP+L+E+ +G +D +A A +F + L
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYAIHAAAHHYRFQLGEMCSLNAQA 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G VL E + YD LVL++G+ PG AE + +L+ A R
Sbjct: 88 QTITLSPLIDEEGTQVLPERE--IHYDQLVLAVGSVSNDFGTPGVAEHCYFLDSLKQAER 145
Query: 227 VDRK-LSELERRNF--GKDSLIRVAVVGCGYSGVELAAT---VSERLEEKGI--VQAINV 278
R L++L R N KD+ I VA+VG G +G ELAA V+ + G+ + A +
Sbjct: 146 FHRALLNQLIRINQQEDKDARIDVAIVGAGATGTELAAQLHHVANLSKAYGMPDMSASRL 205
Query: 279 ETTICPTGTPGNREAALKVL------SARKVQLVLGYFVRCIRRVGEFEAS-VKQPESGA 331
+ TI G E L L SARK LG ++ V E +A+ + + G
Sbjct: 206 KITIVEAG-----ERILPALPERIANSARKALHKLGVDIKEQTMVAEADATGLITKDGGR 260
Query: 332 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLP 389
I +ADL++W G V+ P+ +L
Sbjct: 261 I----------------------------DADLMVWAAG-------VKAPDFITKLELFE 285
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449
N Q D+ L H I+ LGD + +G+ +P AQ A Q AD N+ +
Sbjct: 286 TNRANQILVDKQLRSTTHKNIWVLGDCCGFQQENGKWVPPRAQSAHQMADIVAHNITSLF 345
Query: 450 NDRPLLPFRFQNLGEMMILGR 470
+ F +++ G ++ L +
Sbjct: 346 TQKGTKDFTYKDYGSLVHLSK 366
>gi|358457823|ref|ZP_09168038.1| NADH dehydrogenase (ubiquinone) [Frankia sp. CN3]
gi|357078841|gb|EHI88285.1| NADH dehydrogenase (ubiquinone) [Frankia sp. CN3]
Length = 460
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 115/459 (25%), Positives = 191/459 (41%), Gaps = 79/459 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++GGG+ G+YTALRL + + V +V+ + ++P L E +G ++
Sbjct: 6 EPRILVVGGGYVGMYTALRLRRRLRPGEA--SVTVVEPNSYMTYQPFLPEAAAGNLEPRH 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ +L G + RV + + L T GG E L YD LVL+
Sbjct: 64 VVVPLRKVL--RGCEMISGRVTSIAHAYRLAT----VRTVGGD---EYDL--GYDILVLA 112
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRV-----AVVGC 252
G+ + +PG A+ F ++ +A + K ++ ++ +D + RV +G
Sbjct: 113 PGSVARTLPIPGLADLGVGFKSVAEAIYLRNKVINRIDAAASTRDPVERVRALTFVFIGG 172
Query: 253 GYSGVELAATVSERLE---------EKGIVQAINVETT--ICPTGTPGNREAALKVLSAR 301
GY+G+E A + + ++ + VE T I P +P +K L R
Sbjct: 173 GYAGIEALAELEDMSRYACSYYPDISPNDLRWVLVEATDRILPEVSPAMGLYTVKQLEHR 232
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
++ VR RRV ++ D ++ F+
Sbjct: 233 GIE------VRLSRRVTSLVNG----------HVELDDGTE-----------------FD 259
Query: 362 ADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
AD ++WT G + P+L H DLPL+ RG+ + L V+G P + GD +A+
Sbjct: 260 ADTIVWTAGVRANPVLGHT--------DLPLDERGRLRANPFLQVEGVPDAWTAGDCAAV 311
Query: 420 RDSSGRPLPAT---AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
D +G P T AQ A +QA NL A + P+ P+ + G + LG +
Sbjct: 312 PDLTGPPGATTSPSAQHAVRQARRLADNLVAHLRREPIQPYEHRYAGSVASLGLHRGVAD 371
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
V G+ L G + +L RLPT + +V W
Sbjct: 372 ---VYGIKLHGWPAWFMHRTYHLSRLPTFNRKARVLADW 407
>gi|157960093|ref|YP_001500127.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella pealeana ATCC 700345]
gi|157845093|gb|ABV85592.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella pealeana ATCC 700345]
Length = 402
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 104/418 (24%), Positives = 162/418 (38%), Gaps = 69/418 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A L V D +V+LV+ +KP +E+ +G D+
Sbjct: 3 RIVIVGGGAAGLEIASMLGRSVNSQD---EVILVEGETHHYWKPRFHEIAAGTFDSDLDT 59
Query: 141 PRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ AN G ++ + + L V P T + YD+L++++
Sbjct: 60 ICYFSHGANNGYMHYQAWMTDVNRAAKQLVVRKPNGETD----------TLAYDYLIIAI 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVEL 259
GA GA E T E A ++S L R + + +VG G +G+EL
Sbjct: 110 GAISNDFATQGAKEHCLFLDTPEQARDSWHQISSLLRSGLSRT----INIVGAGATGLEL 165
Query: 260 AA---TVSERLEEKGIVQAINVETT-----ICPTGTPGNREAALKVLSARKVQLVLGYFV 311
AA VSE L +N+ + P G E AL L +V ++L
Sbjct: 166 AAELAKVSEELSRNPYAAKLNINLIEAADRVLPNGPVKMSEQALLRLEKYQVNVMLN--- 222
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371
R+ EA G Q+ AD+ W G
Sbjct: 223 ---TRIASVEADRMTTSDG---------------------------QVLNADVQFWAAG- 251
Query: 372 KPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
++ P+ + L N+ Q ++TL IFALGD +A+ + G +P
Sbjct: 252 ------IKAPDWLKEIGGLQSNSLNQLVVEQTLATTFDSSIFALGDCAAIPQADGSQVPP 305
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
AQ A + A NL A + +PL PF + + G ++ +G N A+S + + L G
Sbjct: 306 KAQAANRAAVHLAKNLVAHLKGKPLKPFVYNDGGMVVAIGHN-FAISTMMNDRLILKG 362
>gi|352095055|ref|ZP_08956158.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. WH 8016]
gi|351679066|gb|EHA62208.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. WH 8016]
Length = 504
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 180/452 (39%), Gaps = 59/452 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + ++ L+D+ +F+P+LY++ +G V
Sbjct: 18 RNAPHVVIVGGGFAGVRACKALAQ------AEVRITLIDKRNFNLFQPLLYQVATGLVAP 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ VK L + +N S ++ YD L
Sbjct: 72 GDVATPLRQLVGKQRNVQVLLGEVKGL-DAKKRQIN-------------FSEKVISYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDSLIR-----VAV 249
VL+ G+ FA P LE A + R+L +E+ D R V +
Sbjct: 118 VLASGSGSTYFGHEEWRTFAPPMKILEHAQEIRRRLLMAMEQAEQTPDPAARKFLQTVVI 177
Query: 250 VGCGYSGVELAATVSERLEE--KGIVQAINVETTICPTGTPGNR--EAALKVLSARKVQL 305
VG G +G E+A SE + + + ++ + + PG+R A + LSA +
Sbjct: 178 VGGGPTGCEMAGATSELMRNAMRREFKQLDPDDSRIIVIDPGDRLLRAMPESLSASAQKT 237
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
+ V + F+ V+ + G + D Q +A V
Sbjct: 238 LESLGVETL-----FKGRVQSMQPGEVSVGTPDGE-----------------QTIQAATV 275
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-G 424
+WT G +P H+ D L+ G+ VK HP I +GD + + +S G
Sbjct: 276 IWTAGVRP--SHLGKTLAASIDCALDRGGRVIVQPDFSVKDHPEIRVVGDLCSYKHTSTG 333
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
PLP A A Q F G ++ A I R F++ + G M +L R A + G
Sbjct: 334 NPLPGMAGPATQAGGFVGKDIAAIIGGRQRPNFKWFDFGSMAVLDRVAAVAD---LRGFK 390
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G G + A+L +P E+R + + W+
Sbjct: 391 FSGSPGWAVWAAAHLAFMPDRENRWSLLIKWM 422
>gi|339018658|ref|ZP_08644788.1| NADH dehydrogenase [Acetobacter tropicalis NBRC 101654]
gi|338752262|dbj|GAA08092.1| NADH dehydrogenase [Acetobacter tropicalis NBRC 101654]
Length = 428
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/444 (24%), Positives = 178/444 (40%), Gaps = 69/444 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+GGG GL A RL + + + K + LVD+ V+KPML+ +G
Sbjct: 6 RLVIVGGGIAGLALATRLGNSLGRAGKL-DITLVDKGFAHVWKPMLHCFAAGTARNENDR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F A G +F + L ++ P+ V+LE + +YD L+ ++G
Sbjct: 65 ITFISHAAGHGFRFCYGEIAGLDRTNRRITLAPLVEQDDEDVILEERYL-DYDALIFAIG 123
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
+ PG + + +A + + +++G+ + + +A+VG G +GV+LA
Sbjct: 124 SRANDFGTPGVEQHCIFLDNVVEANNFNERFRHALLQSYGRGTPLDIAIVGGGATGVQLA 183
Query: 261 ATVSERLEEKGI-----------VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
A + + LE + V + I P+ E A K L A K+ + G
Sbjct: 184 AELHKALEMGSLYNFTPQTPEMRVTLLEAGPRILPSFPEDVSEGARKQLEALKISVRTGA 243
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
V + G +IL+ + +A +W
Sbjct: 244 MVSGVDEKG-------------------------FILK--------DGSRVDAQFRVWAA 270
Query: 370 GSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G K P R+ D AR GQ L RIFA+GD S + ++ P P
Sbjct: 271 GVK------APDVTRVLDGLDCARGGQLVVKPNLQTTQDDRIFAVGDCSFITEN---PFP 321
Query: 429 ATAQVAFQQADFAGWNL--WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
TAQVA Q+A L W ++ +P+ PF+F N G ++ LG + +F +G T
Sbjct: 322 PTAQVARQEAHHLAKYLPDW-ILHQKPVPPFKFHNKGAIVALGSYNG--WGAFADGKTFG 378
Query: 487 GP--------IGHSARKLAYLIRL 502
G +GH+A + I L
Sbjct: 379 GGALRGLSARLGHTALYRQHQIEL 402
>gi|325913821|ref|ZP_08176180.1| NADH dehydrogenase, FAD-containing subunit [Xanthomonas vesicatoria
ATCC 35937]
gi|325539896|gb|EGD11533.1| NADH dehydrogenase, FAD-containing subunit [Xanthomonas vesicatoria
ATCC 35937]
Length = 421
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 162/404 (40%), Gaps = 57/404 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ++GGGF GL+ L DD ++ L+D+ +F+P+LY++ + + A +IA
Sbjct: 2 HLVVVGGGFAGLWATRAL------DDPGIRITLIDRQNHHLFQPLLYQVATAGLSAPDIA 55
Query: 141 PRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L V+ V + P+ V+L G + YD L+L+
Sbjct: 56 APLRHILREQRNVEVLLGDVAEIAPTRR-------------EVVLADGKALGYDMLLLAT 102
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCG 253
GA AE A TL DA + RKL +E E + + + AVVG G
Sbjct: 103 GATHAYFGNDHWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSFAVVGGG 162
Query: 254 YSGVELAATVSERLEEKGIVQAINVE-TTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
+GVELA T++E +N E I P R+A ++++ A
Sbjct: 163 PTGVELAGTLAEIAR-----HTLNNEFRHIDP------RQARVRLVEAGP---------- 201
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
R + F + + + + ++ + + L A V+W G
Sbjct: 202 --RVLPSFPDDLTDKARRQLERLGVEVHTGTPVTHIDALGYQLGDTFVPARTVVWAAGV- 258
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P R +PL+ G+ L V GHP IF GD ++++ GRP+P A
Sbjct: 259 -----AASPLARTLGVPLDRAGRVLVQPDLSVPGHPEIFVGGDLASVQ-QGGRPVPGVAP 312
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
A Q + A + + FR+Q+ G + +GR A V
Sbjct: 313 AAKQMGKHIAKAIRARQHGQAAAAFRYQDFGNLATIGRMAAIVH 356
>gi|401420816|ref|XP_003874897.1| putative NADH dehydrogenase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491133|emb|CBZ26398.1| putative NADH dehydrogenase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 524
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 191/469 (40%), Gaps = 88/469 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + +LG G+ G Y A + D + ++ VF P+L + +G ++
Sbjct: 11 KPNVVVLGTGWAGCYAAHHI------DPNLCNIHVISTRNHMVFTPLLPQTTTGTLEFRS 64
Query: 139 IAPRFADL---LANTGVQFFK--------DRVKLLCP-------SDHLGVNGPMACTHGG 180
+ ++ LA +F + D ++ C S+++ VN
Sbjct: 65 VCEPITNIQPALAKLPHRFLRSVIYDVDFDEKQVKCVGVGVVGGSENVPVNT-------- 116
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNF 239
V YD+L+++ GA P +PG E AF + +A + ++L + + N
Sbjct: 117 -------FSVPYDYLIMAYGARPNTFNIPGVEEKAFFLREVNEARGIRKRLVQNIMTANL 169
Query: 240 GKDS------LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREA 293
S L+ VVG G +G+E AA ++E E NV T++ P
Sbjct: 170 PTTSIAEAKRLLHTVVVGGGPTGIEFAANLAEFFRE----DIKNVNTSLLPY-------C 218
Query: 294 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353
+ VL A + VLG F +RR G+ + E I A +D+ +
Sbjct: 219 KVTVLEAGE---VLGSFDTALRRYGQLRLNQLGVE---IRKTAVVGVTDEEVFTKS---- 268
Query: 354 GLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV--KGHP- 408
++ LV+W+ VGS P+ + + RG+ D+ L V G P
Sbjct: 269 ---GEVLPTGLVVWSTGVGSCPV--------TKALNCDKTNRGRISIDDHLRVLRDGKPI 317
Query: 409 -RIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMM 466
+FA GD +A S+ RPLP A VA +Q + G + + + + PF +++LG M
Sbjct: 318 LNVFAAGDCAA---SNERPLPTLAAVASRQGRYIGKEMNNLLKGKQMSKPFAYRSLGSMA 374
Query: 467 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+G A VS L+G K AYL L + +L V V+W
Sbjct: 375 SIGNRSAIVSLGNKFKFDLNGFTALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|434385616|ref|YP_007096227.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428016606|gb|AFY92700.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/442 (22%), Positives = 181/442 (40%), Gaps = 58/442 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL A L Q K +VLL+D++ F P+LY++ + +++ P
Sbjct: 8 VVIIGAGFGGLQAAQSLA----QSGK--EVLLIDRNNYHTFVPLLYQVATAQLE-----P 56
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
A T V+ + R LL + + T + EYD+L+++ G+
Sbjct: 57 EHIIYPARTIVRCDRRRHFLLAEVEQIDFAARTIKTDRAEI--------EYDFLIIATGS 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYS 255
+ + VPGA EFAF ++ A + ++ + +E + L+ ++G G +
Sbjct: 109 KSQYLGVPGAEEFAFSMRSIAQAVTLRNQILACFEAASIEVNPLRRQQLLTFVIIGGGAT 168
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
G E+A E L + L+ R+V+L+L C+
Sbjct: 169 GAEVAGAFVELLRSR--------------------MRHEYPTLNLREVKLILVQSGDCL- 207
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPL 374
+ E + + + D I + P A+ + Q+ V+WT G
Sbjct: 208 -LSELPPKLGIYTQKYLQKLGVDVRLSTKIDRITPDAVYLQDRQVISTKTVIWTAGVDAA 266
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
+P + +D + + TL + ++A+GD++ + D +G+ L A A
Sbjct: 267 VPDLA------NDWERGTKNKLRVRPTLQSIEYANVYAIGDAAYV-DRAGQTLSGVAPEA 319
Query: 435 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 494
QQ N+ + + PF + N G + I+G + A V ++G G +
Sbjct: 320 LQQGVAVARNITRQLRGQLPQPFNYFNKGRLAIIGCH-AGVGQ--IQGWKFTGFLAWIMW 376
Query: 495 KLAYLIRLPTDEHRLKVGVSWL 516
+L+ LP +RL V ++WL
Sbjct: 377 LGVHLVYLPGYRNRLFVLLTWL 398
>gi|315640542|ref|ZP_07895650.1| NADH dehydrogenase [Enterococcus italicus DSM 15952]
gi|315483746|gb|EFU74234.1| NADH dehydrogenase [Enterococcus italicus DSM 15952]
Length = 413
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 170/416 (40%), Gaps = 73/416 (17%)
Query: 77 KKKPRIC----ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSG 132
+KK RI ILG G+ GL ALR + + + LVDQ++ L+E+ +G
Sbjct: 5 RKKERIVKEVTILGAGYAGL-RALRA---LQEKQGSFHITLVDQNDYHYEATCLHEVAAG 60
Query: 133 EVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
+I D++ + F +D V+ + T + L + + Y
Sbjct: 61 TQPKEKITFPIKDVVKGS-TTFIQDCVQAID-------------TEKQEITLANNAPLHY 106
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKD-SLIRVAVV 250
D+L++SLG + +PGA E A +E A ++ + L+ + + KD + +++ V
Sbjct: 107 DYLIVSLGFRSETFGIPGAKEDALQMVNIETAEKIHQHILAMMAKYKETKDKNYLKLVVC 166
Query: 251 GCGYSGVELAATVSE---RLEEKGIVQAINVET-------TICPTGTPGNREAALKVLSA 300
G G++G+EL ++ E R + VQ +E +I P L L
Sbjct: 167 GAGFTGIELVGSLVEARPRYAKIAGVQPEEIEIYCVEAAPSILPMFNDDLTNYCLSYLDK 226
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN--IAADKNSDKYILELQPAIKGLESQ 358
+V+L+ G ++ I+ PN + D D + ELQ A
Sbjct: 227 WQVKLMTGKAIKAIK-----------------PNTVVYQDGKEDTDLAELQAAT------ 263
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
++WT G V RG+ +E L H ++ +GD SA
Sbjct: 264 ------IIWTTG-------VSGSEVITKSGFSERRGRVMVNEDLTDPNHANVYLIGDVSA 310
Query: 419 LRDS-SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+ D S RP P TAQ+A + AG N+ + + PF +Q+ G + +G A
Sbjct: 311 VMDKESNRPYPTTAQIATKMGAHAGENILRQLAGQAPTPFTYQSQGSVASIGNTHA 366
>gi|349688488|ref|ZP_08899630.1| NADH dehydrogenase [Gluconacetobacter oboediens 174Bp2]
Length = 428
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 169/399 (42%), Gaps = 45/399 (11%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RI I+GGG GL A RL + V + + ++ LVD+S V+KPML+ +G
Sbjct: 3 QKFRIVIVGGGVAGLALATRLGNSVGRSGRA-EITLVDKSFAHVWKPMLHCFAAGTAANE 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + +F+ + L P+ G +++++ ++YD +VL
Sbjct: 62 NDRISFMSQASRHHFEFWPGEITALDRKAKTISLAPIKDPQTGEMVVDA-RTLDYDAVVL 120
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
S+G+ PG AE L DA + + R F + +A+VG G +G
Sbjct: 121 SIGSRANDFGTPGVAEHCMFIDNLVDANGFNDRFRMELLRAFANHQELDIAIVGGGATGT 180
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR-- 315
+LAA + + L+ + + G + L++ +L F +
Sbjct: 181 QLAAELHKALD-------------LASLYSFGEKPPKLRITLLEAGPRILPAFPESVSDA 227
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
V + EA +GA+ + AD+N +IL+ + A L +W G K
Sbjct: 228 AVRQLEAIGVTVRAGAMVS-GADENG--FILK--------DGSRVPATLRVWAAGVKA-- 274
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
P V + L L+ GQ E TL V IFA+GD + + + +P+ TAQ A
Sbjct: 275 PDV---TRQFGGLKLSRSGQLEVRPTLQVMDDDNIFAMGDCAFIAE---KPVAPTAQAAR 328
Query: 436 QQAD-----FAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
QQA GW + + RPL F F N G ++ LG
Sbjct: 329 QQAHHLAKVLPGWMM----SGRPLPAFTFHNKGAVVALG 363
>gi|223043028|ref|ZP_03613076.1| putative pyridine nucleotide-disulphide oxidoreductase
[Staphylococcus capitis SK14]
gi|222443882|gb|EEE49979.1| putative pyridine nucleotide-disulphide oxidoreductase
[Staphylococcus capitis SK14]
Length = 402
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/411 (24%), Positives = 179/411 (43%), Gaps = 66/411 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D+ ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKEISADE--AEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL +D+V + + N T G + +YD L
Sbjct: 60 ------YEDLLYPVESAVKQDKVNFVVAEVTKIDRNAKRVETDKG--------VYDYDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G ++AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIEGMKDYAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE----KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
G G++G+E +++R+ E GI Q+ V+ T EAA K+L +LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGIDQS-KVKLTCV--------EAAPKMLPMFSDELV 215
Query: 307 LGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
Y V + G EF+ A P +A N +++E+ E Q E+
Sbjct: 216 -NYAVNYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVDG-----EKQQLESGTS 259
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDS 422
+WT G + ++L + RG+ + L ++GH IF +GD SA +
Sbjct: 260 VWTAGVR---------GSKLMEESFEGVKRGRIINKQDLTIEGHDDIFVIGDCSAFIPAG 310
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ + N+ +N F++ N G + LG +D
Sbjct: 311 EERPLPTTAQIAMQQGEHVAKNIKHILNGESKEDFQYVNRGTVCSLGAHDG 361
>gi|427411563|ref|ZP_18901765.1| hypothetical protein HMPREF9718_04239 [Sphingobium yanoikuyae ATCC
51230]
gi|425709853|gb|EKU72876.1| hypothetical protein HMPREF9718_04239 [Sphingobium yanoikuyae ATCC
51230]
Length = 439
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 177/425 (41%), Gaps = 81/425 (19%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PDKK +I I+GGG GL A +L + + K+ ++L+D++ ++KP+L+E+ +G +
Sbjct: 3 PDKKT-QIVIVGGGAAGLELARKLGARYGR--KRHDIILIDRNRTHIWKPLLHEVATGSL 59
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
DA + G ++ ++ + + P+ G V+ S V YD+
Sbjct: 60 DASLDEVGYRSHCHRWGYRYLYGTLQGIDRTARRIHVAPVFDPKGREVV--SAHSVRYDY 117
Query: 195 LVLSLGAEPKLDVVPGAAEF-----------AFPFSTLEDACRVDRKLSELERRNFGKDS 243
LVL+ G+ PG A+ +F L+ RV R +S + D+
Sbjct: 118 LVLAYGSVTNDFGTPGVADNCLFLDSRAQADSFRDQLLDHCLRVSRAMSA----DPASDA 173
Query: 244 LIRVAVVGCGYSGVELAATVSERLEEKG-----IVQAINVETTICPTGTPGNREAALKVL 298
+R+A+VG G +GVELAA + + G + ++ T+ EA ++L
Sbjct: 174 RVRIAIVGGGATGVELAAELYNAADALGYYGLEVFDRQRLDVTLL--------EAGPRIL 225
Query: 299 ---------SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
+AR+ +LG VR + PE
Sbjct: 226 PALPDRLADAAREELEMLGVKVRA-----GVAVTASTPE--------------------- 259
Query: 350 PAIKGLESQ---IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 406
G+E++ ADL +W G K + L L L GQ TL
Sbjct: 260 ----GMETKDGGFVPADLQVWAAGVK-----AATIRDGLDGLELFRAGQVIVRPTLQSLA 310
Query: 407 HPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 465
R+FA+GD +S + RP+P AQ A Q AD NL + DRPL F +++ G +
Sbjct: 311 DDRVFAMGDCASYTPQGADRPIPPRAQAAHQMADTVFANLGRLMADRPLKAFVYKDHGSL 370
Query: 466 MILGR 470
+ L R
Sbjct: 371 VSLSR 375
>gi|417646523|ref|ZP_12296378.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU144]
gi|329726785|gb|EGG63245.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU144]
Length = 402
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 173/407 (42%), Gaps = 58/407 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTINY 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++ R + V F ++ + N T G + ++D LV
Sbjct: 61 EDLLYRVEKTVNKNKVNF------VVAEVTKIDRNAKRVETDKG--------VYDFDILV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVG 251
++LG + + G E AF + + ++ R + E + N+ D + + V G
Sbjct: 107 VALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVGG 165
Query: 252 CGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 166 AGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV-S 216
Query: 309 YFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y V+ + G EF+ A P +A N +++E+ E Q EA +W
Sbjct: 217 YAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRP 426
T G + H+ + RG+ + L ++GH IF +GD SA + RP
Sbjct: 262 TAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPADEERP 314
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 315 LPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|167567826|ref|ZP_02360742.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia oklahomensis EO147]
Length = 430
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 166/401 (41%), Gaps = 37/401 (9%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ RI I+GGG GL A RL + + + QV L+D+S ++KPML+ + +G D
Sbjct: 2 HQTTRIVIVGGGIAGLLLATRLGDALGRSGRA-QVTLIDKSATHIWKPMLHTIAAGTRDV 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ + + G + ++ L + + + G V+ VEYD L+
Sbjct: 61 QQQQVIYLAHARDHGFNYQPGEMEGLDRNARVVKLAELRSPSGEIVI--GPRTVEYDVLI 118
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
L+LG+ PG + + A + L ++ +S +RV++VG G +G
Sbjct: 119 LALGSRANDFRTPGVLDHCHFIDSQAQAEVFNEALRIRIFQSVVTNSPLRVSIVGAGATG 178
Query: 257 VELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
VELAA +S LE G P R +L L + R
Sbjct: 179 VELAAELSRLLE------------VAASYGDPHIRS-----------RLNLTLYESAPRV 215
Query: 317 VGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLL 375
+ F +V + + +I + + +P ++ + ADL++W G
Sbjct: 216 LAAFPPTVSESSEAQLRHIGFTVRTGTRVTAAEPDGLRLGDGSQQPADLMVWAAG----- 270
Query: 376 PHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQ 432
V+ P+ ++L + N Q TL + +FALGD S L + RPL TAQ
Sbjct: 271 --VKAPDFLSKLDGIESNRSNQITVRPTLQSQDDDTLFALGDCSTLTLAGNERPLAPTAQ 328
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
VA QQA +L A + L F F + G ++ L +A
Sbjct: 329 VATQQAQHLAKHLPAWLGGGSLPDFAFHDFGALVSLSDYNA 369
>gi|333982102|ref|YP_004511312.1| NADH dehydrogenase [Methylomonas methanica MC09]
gi|333806143|gb|AEF98812.1| NADH dehydrogenase [Methylomonas methanica MC09]
Length = 433
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 173/414 (41%), Gaps = 74/414 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP---QVLLVDQSERFVFKPMLYELLSGEVDAW 137
+I I+GGG GL L + + Q KP ++ L+D + ++KP+L+E+ SG +
Sbjct: 7 KILIIGGGAAGL----ELATCLGQQLGKPGLAEITLLDAASTHIWKPLLHEVASGTLAEA 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E A N +F R++ L + P+ G ++ + +YD LV+
Sbjct: 63 EEIEYLAQAHRNH-FRFLFGRMEGLNREAKQIIVSPITNKQGIELIPQRTF--KYDTLVM 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE------LERRNFGKDSLIRVAVVG 251
S+G+ + G T A R ++L E ++ +D + + +VG
Sbjct: 120 SVGSVSNTFGINGVDRNCMFIDTTSQAYRFQKQLVETYYIQSYANQSHQRDKPLSIVIVG 179
Query: 252 CGYSGVELAA---TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVL--------SA 300
G +GVEL+A V++ L G+ +I V TI EAA ++L A
Sbjct: 180 AGATGVELSAELHQVTKLLATYGLEGSIEVNITII--------EAANQLLPALPPRLSQA 231
Query: 301 RKVQLV-LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
+ QLV LG ++ RRV E + A+ + ++
Sbjct: 232 TQEQLVKLGINLKLGRRVTEVT---------------------------ETAVHTHDGEV 264
Query: 360 FEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
F+ADL +W G ++ P+ L L N Q D+TL IFA+GD +
Sbjct: 265 FDADLKVWAAG-------IKAPDWMKNLDGLETNHINQLLVDQTLKTSD-DNIFAIGDCA 316
Query: 418 ALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
A G +P AQ A QQA + + +P +PF + + G ++ LG+
Sbjct: 317 ACEWVGHGGNVPPRAQAAHQQASTVAKTIVNRLKGKPAVPFVYHDYGSLVSLGK 370
>gi|225872948|ref|YP_002754405.1| pyridine nucleotide-disulfide oxidoreductase [Acidobacterium
capsulatum ATCC 51196]
gi|225794009|gb|ACO34099.1| pyridine nucleotide-disulfide oxidoreductase [Acidobacterium
capsulatum ATCC 51196]
Length = 422
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 184/429 (42%), Gaps = 77/429 (17%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV+LVD+S +F+P+LY++ + + +IA +L + K+ +L + +G
Sbjct: 29 QVVLVDRSNHHLFQPLLYQVATAVLAPGQIATPIRSVLHDQ-----KNATVIL--GNVVG 81
Query: 170 VNGPMACTHGGTVLLE----SGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLE 222
++ T VL + + + YD+LVL+ GA D G +F F TL
Sbjct: 82 ID-----TEAKAVLADINDSKSVPIRYDFLVLATGAR---DAYFGHCDFERYTFGLKTLA 133
Query: 223 DACRV-DRKLSELERRNFGKD-----SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276
DA + +R LS E F +D SL+ +VG G +GVE+A+ + A+
Sbjct: 134 DAVALRNRILSVFEMAEFAEDLEQRQSLLTFVLVGAGPTGVEMASAI-----------AV 182
Query: 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 336
+++T+ ++ + + +++L R R + F+ + + ++
Sbjct: 183 LIQSTL---------KSDFRRMDPAMARIIL--VERSDRVLDNFDPRLSMAAQRRLQSLG 231
Query: 337 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 396
+ + + E+ + Q A V+W G P P + L +A
Sbjct: 232 VELMLGQTVEEIDDTGVTIHGQHIAARTVIWAAGVAP-----SPAGDWL---------KA 277
Query: 397 ETDET--------LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
ETD++ L V P +F +GD++ + +G PLP AQVA QQ +A + A
Sbjct: 278 ETDKSGRVLVHRDLSVPNLPEVFVVGDTAHF-EQNGHPLPGVAQVAIQQGQYAARVIAAR 336
Query: 449 INDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
+ D P P FR+ + G + + GR A + + + L G +L L +
Sbjct: 337 VEDAPFAPMFRYLDKGNLAVAGRGFAVLQS---DKIKLSGFWAWWIWAAVHLRFLAGNNL 393
Query: 508 RLKVGVSWL 516
RL V V W+
Sbjct: 394 RLSVSVQWM 402
>gi|421468173|ref|ZP_15916736.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans ATCC BAA-247]
gi|400232462|gb|EJO62077.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans ATCC BAA-247]
Length = 452
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/408 (25%), Positives = 172/408 (42%), Gaps = 43/408 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAVRIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + + ++V
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
+G G +GVELAA + A+ TT R AL +++L+ G
Sbjct: 192 IGAGATGVELAA---------ALCHAVQQLTTY--------RFKALDAARDVRIRLIEG- 233
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWT 368
R + +A + + + D +D + E+ A+ + +D+ +W
Sbjct: 234 ---APRILPALDARLSDKMHAQLRALNVDVLTDTRVAEVGADAVTIASGERLASDITIWA 290
Query: 369 VGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGR 425
G V P L + LN Q +TL P ++A GD +A + +
Sbjct: 291 AG-------VAGPAILRELDGIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSNGASG 343
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP AQVA QQA + I +P+ F F++ G ++ LG A
Sbjct: 344 CLPPRAQVAHQQAVYLSQAFARRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|297545455|ref|YP_003677757.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296843230|gb|ADH61746.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 596
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/437 (21%), Positives = 178/437 (40%), Gaps = 84/437 (19%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+GG++ A +L +++D +++L+D+ L+E+ ++ +
Sbjct: 6 RIVIVGAGYGGVHAA-KLLHKKFKNDSNIEIILIDKKPYHTLLTDLHEVAGSRIEPDSVR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AN V+ D V+ + + +G +G YD+L+L
Sbjct: 65 VYLHKIFANKKVKVIIDEVEKIDYETNRVIGKDGEY----------------HYDYLILG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF------GKDSLIRVAVVGC 252
+G+EP VPG E+ F TLE A + + E+ R+ K ++ V G
Sbjct: 109 IGSEPCDFGVPGVFEYGFTVGTLEAAIKTKEHIEEMFRKASVESNPEKKRKMLTFVVAGA 168
Query: 253 GYSGVELAATVSE---------RLEEKGI-VQAINVETTICPTGTPGNREAALKVLSARK 302
G++G+E A + E L+ K + + + TI P + A + L+ +
Sbjct: 169 GFTGIETAGELMEWAKSLCDKYHLDYKDVKIMVVEALNTILPNLNAKLAKKATRFLAKKG 228
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+++ + I +A D YI+ L+ K E
Sbjct: 229 VEVL---------------------TNAPIVEVAKD-----YIV-LKDGRK------IET 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
++WT G + N+ + L L R + +T+E + I+ +GD A
Sbjct: 256 KTLIWTCGVQ---------GNKCAENFGLELGRRSRIQTNEYMQAVNKENIYVIGD-LAY 305
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
+ G+P+P + A Q A+ +N+ A I PF+ + G M+ +G A
Sbjct: 306 YEIDGKPIPQVVETALQSAETVVYNIVADIKGGEKQPFKPKYHGFMVSIGSRYAVAE--- 362
Query: 480 VEGVTLDGPIGHSARKL 496
+ GV+L G + + + L
Sbjct: 363 IMGVSLTGFLAMAMKHL 379
>gi|418615873|ref|ZP_13178808.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU118]
gi|418633463|ref|ZP_13195878.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU129]
gi|420162790|ref|ZP_14669545.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM095]
gi|420167233|ref|ZP_14673894.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM087]
gi|420189204|ref|ZP_14695188.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM037]
gi|420203850|ref|ZP_14709411.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM015]
gi|420234104|ref|ZP_14738676.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH051475]
gi|374816058|gb|EHR80274.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU118]
gi|374839308|gb|EHS02823.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU129]
gi|394235787|gb|EJD81337.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM095]
gi|394238862|gb|EJD84319.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM087]
gi|394262843|gb|EJE07598.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM037]
gi|394274432|gb|EJE18853.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM015]
gi|394304601|gb|EJE47999.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH051475]
Length = 402
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G E AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV- 215
Query: 308 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y V+ + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSV 260
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
WT G + H+ + RG+ + L ++GH IF +GD SA + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|116072098|ref|ZP_01469366.1| putative type 2 NADH dehydrogenase (Ndh, Ndh2B or NdbA)
[Synechococcus sp. BL107]
gi|116065721|gb|EAU71479.1| putative type 2 NADH dehydrogenase (Ndh, Ndh2B or NdbA)
[Synechococcus sp. BL107]
Length = 517
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/456 (23%), Positives = 179/456 (39%), Gaps = 67/456 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + ++ L+D+ +F+P+LY++ +G V +
Sbjct: 25 RHAPHVVIVGGGFAGIQACRALA------QSEVRITLIDKRNFNLFQPLLYQVATGLVAS 78
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA +L+ VQ V L P +H ++ +G YD L
Sbjct: 79 GDIATPLRELVGKQPNVQILLGEVTQLIPDEH--------------KIVFNGKTFSYDHL 124
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----------SELERRNFGKDSLI 245
VL+ G+ FA P LE A + R+L + E R F L
Sbjct: 125 VLATGSGSSFFGQDQWRTFAPPMKILEHAEEIRRRLLMAMEQAEQTPDPEARQF----LQ 180
Query: 246 RVAVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNR--EAALKVLSAR 301
V V+G G SG E+A S R K Q ++ T PG + + K LS
Sbjct: 181 TVVVIGSGPSGCEMAGAASRMLRWSLKDAYQQLDPTQTRILLIDPGEKVLRSMPKELSKE 240
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
+Q + V ++ ++ V+ G + + + N + Q
Sbjct: 241 ALQALQKAGVEFLQ-----QSRVQSMRPGEV--VVSTPNGE---------------QCIR 278
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALR 420
A V+WT G + H+ L+ G+ + + HP I GD S
Sbjct: 279 AATVIWTAGVRA--SHLGQALEATTGCSLDRGGRVVVEPDFSIYNHPEIRIAGDLCSYSH 336
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
+ G+PLP A A Q F G ++ A + RP FR+ +LG M I+ D + + + +
Sbjct: 337 TNDGQPLPGMAAPAKQAGSFIGKDIAAVVAGRPRPTFRYLDLGSMAIV---DGSSAVADL 393
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G+ G IG +L + + R+ + W+
Sbjct: 394 RGLKFSGLIGVLLWAGVHLGLIHDMQQRVSLATKWV 429
>gi|152977321|ref|YP_001376838.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus cytotoxicus NVH 391-98]
gi|152026073|gb|ABS23843.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bacillus cytotoxicus NVH 391-98]
Length = 392
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 165/414 (39%), Gaps = 85/414 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G + IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNISEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDKKEVKLVGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDS-------------LIRV 247
++ +PG E + + +DA ++ + + E R + K L V
Sbjct: 109 SKTAYFGIPGLEENSMVLKSADDANKIFKHVEE-RIREYAKTKNEADATILIGGGGLTGV 167
Query: 248 AVVGCGYSGVELAATVSERLEEKGI----VQAINVET--TICPTGTPGNREAALKVLSAR 301
+VG ELA + + + G+ V+ + VE I P E A L AR
Sbjct: 168 ELVG------ELADVMPKLAKSYGVNPKEVKLLLVEAGPKILPVLPDDLIERATTSLEAR 221
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V + G +P + N+ +EL+ + Q
Sbjct: 222 GVTFLTG-----------------------LPVTNVEGNT----IELK------DGQKIV 248
Query: 362 ADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
A+ +WT G PL+ L +N RG+A D+ L H +F GDS+ +
Sbjct: 249 ANTFVWTGGVQGNPLIGE--------SGLEVN-RGRATVDDYLQSTSHKNVFVAGDSAVV 299
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
GRP P TAQ+A+Q + G+NL+AA+ + L F+ N G + LGR DA
Sbjct: 300 FGPEGRPYPPTAQIAWQMGELIGYNLYAALEGKALEEFKPVNSGTLASLGRKDA 353
>gi|325928674|ref|ZP_08189849.1| NADH dehydrogenase, FAD-containing subunit [Xanthomonas perforans
91-118]
gi|346726596|ref|YP_004853265.1| NADH dehydrogenase [Xanthomonas axonopodis pv. citrumelo F1]
gi|325540952|gb|EGD12519.1| NADH dehydrogenase, FAD-containing subunit [Xanthomonas perforans
91-118]
gi|346651343|gb|AEO43967.1| NADH dehydrogenase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 430
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 164/410 (40%), Gaps = 59/410 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + + ++GGGF GL+ L DD ++ LVD+ +F+P+LY++ + +
Sbjct: 5 PSQAPLHLVVVGGGFAGLWATRAL------DDPGIRITLVDRQNHHLFQPLLYQVATAGL 58
Query: 135 DAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
A +IA +L V+ V + P V+L G + YD
Sbjct: 59 SAPDIAAPLRHILREQRNVEVLLGDVTDIAPDRR-------------EVVLADGSTLGYD 105
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
L+L+ GA AE A TL DA + RKL +E E + + +
Sbjct: 106 MLLLATGATHAYFGNDQWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSF 165
Query: 248 AVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
AVVG G +GVELA T++E R K + I+ R+A ++++ A
Sbjct: 166 AVVGGGPTGVELAGTLAEIARHTLKNEFRHID------------PRQARVRLVEAGP--- 210
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
R + F + + + + ++ + ++ L A V
Sbjct: 211 ---------RVLPSFPEDLTAKARKQLERLGVEVHTGTPVTQIDALGYQLGDTFVPARTV 261
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
+W G P R +PL+ G+ + L V GHP IF GD ++++ GR
Sbjct: 262 VWAAGV------AASPLARTLGVPLDRAGRVLVEADLSVPGHPDIFVGGDLASVQ-QDGR 314
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
P+P A A Q + A + FR+Q+ G + +GR A V
Sbjct: 315 PVPGVAPAAKQMGKHIAKAIRARQRGQTAPAFRYQDYGNLATIGRMAAIV 364
>gi|418736047|ref|ZP_13292450.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|421096509|ref|ZP_15557212.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. 200801926]
gi|410360660|gb|EKP11710.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. 200801926]
gi|410748054|gb|EKR00955.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|456886608|gb|EMF97748.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. 200701203]
Length = 422
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/457 (21%), Positives = 186/457 (40%), Gaps = 75/457 (16%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ETRKRKIVVVGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDW 194
+IA L+ +R+ + V G T + YD+
Sbjct: 58 PADIAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSTNYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVA 248
L+LS GA+ ++ L+DA R+ KL E+ D +L+
Sbjct: 104 LILSAGAKSSYFGNDHWEKYTIGLKNLKDALRIRHKLLISFEKAELSGDPEVVKALLNYV 163
Query: 249 VVGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
++G G +GVELA +++E R E I A++ T I EAA ++L+
Sbjct: 164 IIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLTTFD 214
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
L GEF + K+ ES + + + ++++ LE ++
Sbjct: 215 PSL------------GEF--TKKRLESRGVEVLTGTR-----VIDINERGVQLEEKMITT 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
V+W G + N + + L+ G+ DE ++GHP +F +GD +
Sbjct: 256 QTVIWAAGVQA---------NTIASTLGVTLDRGGRVIVDEFCNIEGHPEVFVIGDIAHY 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
RPLP + VA QQ + + + ++ FR+ + G M +GR DA
Sbjct: 307 SKGLERPLPGVSPVAMQQGRYVAALIQGDLKNKKRKSFRYVDKGSMATIGRTDAVAQMGV 366
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + G G A +L ++++ + ++W+
Sbjct: 367 LR---MRGLFGWFAWLFVHLFYQVGFKNKVTILITWV 400
>gi|365865807|ref|ZP_09405441.1| putative NADH dehydrogenase [Streptomyces sp. W007]
gi|364004751|gb|EHM25857.1| putative NADH dehydrogenase [Streptomyces sp. W007]
Length = 467
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 191/450 (42%), Gaps = 55/450 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKK--PQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
RI ++GGG+ G+YTALRL+ + Q K ++++V ++P L E +G +
Sbjct: 2 RILVVGGGYVGMYTALRLQRKLKQRLKSGDAEIVVVTPEPYMTYQPFLPEAAAGSISPRH 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ +L + + + R + + +A GT LE G YD +V++
Sbjct: 62 VVVPLRRVLNDCTIVIGEARS--IDHAKRTATVTTLATGEDGTGALEIG----YDEIVIA 115
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVAV-----VGC 252
G+ + VPG AEF F T+E+A + + + +++ + +D IR A VG
Sbjct: 116 PGSVSRTLPVPGLAEFGIGFKTVEEAIGLRNHVIEQMDIASATRDPAIRDAALTFVFVGG 175
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR---KVQLVLGY 309
GY+GVE A LE+ A P + + L S R +V +G
Sbjct: 176 GYAGVEALA----ELEDMARYTARYYHNI-----KPADLKWILVEASGRILPEVGEAMGT 226
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ +GE NI ++ E + A+ S+ F ++WT
Sbjct: 227 YA-----IGELRGR----------NIDVRLDTRLDTCEDRVAVLSDGSR-FPTRTLVWTA 270
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS----GR 425
G KP P DLPL RG+ TL V+ P +A GD++A+ D + GR
Sbjct: 271 GVKP------APLLAATDLPLTERGRLRCTATLGVEDMPHAWAAGDAAAVPDLTASEPGR 324
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 485
AQ A +QA N+ A+++ RPL +R +G + LG + + V G L
Sbjct: 325 ETAPNAQHAVRQAKVLADNVLASVDGRPLKEYRHAYVGSVASLGLHKGV---AHVYGRKL 381
Query: 486 DGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
G + +L R+PT + +V W
Sbjct: 382 KGYPAWLMHRTYHLSRVPTFNRKARVLAEW 411
>gi|386816479|ref|ZP_10103697.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thiothrix nivea DSM 5205]
gi|386421055|gb|EIJ34890.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thiothrix nivea DSM 5205]
Length = 446
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 169/405 (41%), Gaps = 69/405 (17%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ + L+D++ ++KPML+E+ SG +D D LA F+ RV + D
Sbjct: 38 KQAHITLIDKNLTHIWKPMLHEIASGSMD---YTLHEVDYLAQARAHHFRYRVGAMTHID 94
Query: 167 ----------HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAF 216
H V G TV + YD LV+++G+ +PG AE A
Sbjct: 95 RQQKRVFIDAHTDVEGQ-------TVTQQRSF--PYDTLVVAIGSRTHDFGIPGVAEHAI 145
Query: 217 PFSTLEDACRVDRKL-SELERRNFGKDSL----IRVAVVGCGYSGVELAATVSERLE--- 268
T E A R R+L + R N ++ L ++VA++G G +GVELAA + + +
Sbjct: 146 QLDTAEQAQRFHRRLVNACIRANAQEEPLYAGQLQVAIIGAGATGVELAAELHKSIRTLL 205
Query: 269 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 328
+ G+ + I+ + + T EAA ++LSA + + R ++R+ +
Sbjct: 206 DYGL-ETIDADRDV----TLNLIEAAPRILSALP-ERIAAEATRILQRL-KVNIRTNARV 258
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
S +P+ ++ + A+LV+W G + + R+ L
Sbjct: 259 SAVLPD----------------GVQLSSGEFIPAELVVWAAGIRSFVC-----LQRMDGL 297
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSA---LRDSSGRPLPATAQVAFQQADFAGWNL 445
+N Q +L IFA GD +A L G +P AQ A QQA +
Sbjct: 298 EINDINQLLVKPSLQTTQDDSIFAFGDCAAAAWLGKPDGTLIPPRAQAAHQQAMHLTKQM 357
Query: 446 WAAINDRPLLPFRFQNLGEMMILGRN--------DAAVSPSFVEG 482
+ +PL F +Q+ G ++ LG N + A FVEG
Sbjct: 358 HHLLEGKPLEDFHYQDFGSLVSLGENWAVGGLMGNLAKGTLFVEG 402
>gi|317495421|ref|ZP_07953790.1| pyridine nucleotide-disulfide oxidoreductase [Gemella morbillorum
M424]
gi|316914480|gb|EFV35957.1| pyridine nucleotide-disulfide oxidoreductase [Gemella morbillorum
M424]
Length = 396
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 177/416 (42%), Gaps = 90/416 (21%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ GL T L+ + K V LV+++ L+E+ +G + + +I
Sbjct: 4 VVILGAGYAGLTTLKGLKKAAKAGEVK--VTLVNKNSYHYDTVNLHEVSAGNIPSRDICI 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ GV F +D V + L +L ++YD LV+ LG
Sbjct: 62 DIKDVV-TPGVSFVQDEVIKIDTEKKL--------------VLTKKHEIDYDVLVIGLGF 106
Query: 202 EPKLDVVPGAAEFAFPF----------STLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
+P+ + G AE A P +TLED RK + E ++ KD I V V G
Sbjct: 107 QPETFGIEGMAENAMPIADVLAAEKIAATLEDNF---RKYATSEEKDV-KD--ISVIVGG 160
Query: 252 CGYSGVELAATVSERLEE----KGI------VQAINVETTICPTGTPGNREAALKVLSAR 301
G +G+E + R +E GI + ++ T+ P T + A K L
Sbjct: 161 TGLAGMEFLGELVHRKKELCSKYGIDEKLVKIYGLDAAPTLLPMFTKEYSDYARKYLEDN 220
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
++++LG ++ GA +D +I+E++ E + +
Sbjct: 221 GIEIILGAGIK-----------------GA--------TADSFIIEVEG-----ERKELK 250
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHD--LP-LNARGQAETDETLCVKGHPRIFALGDSSA 418
A ++WT G + N+L D P L+ RG+ T + L V G I+ +GD +A
Sbjct: 251 ASTLVWTAGVR---------GNKLMDETFPELSKRGRLVTTQQLTVPGMEDIYIVGDCAA 301
Query: 419 LRDSSG-RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
++ RP P TAQ+A Q + G A I+ +P+ F++ N G + LG D
Sbjct: 302 FIETGQERPYPTTAQIANQMGAYVG----ARISGKPVGDFKYINRGVVCSLGHKDG 353
>gi|116329586|ref|YP_799305.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116332475|ref|YP_802192.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122479|gb|ABJ80372.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116127342|gb|ABJ77434.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 422
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/457 (21%), Positives = 186/457 (40%), Gaps = 75/457 (16%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ETRKRKIVVVGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDW 194
+IA L+ +R+ + V G T + YD+
Sbjct: 58 PADIAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSTNYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVA 248
L+LS GA+ ++ L+DA R+ KL E+ D +L+
Sbjct: 104 LILSAGAKSSYFGNDHWEKYTIGLKNLKDALRIRHKLLISFEKAELSGDPEVVKALLNYV 163
Query: 249 VVGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
++G G +GVELA +++E R E I A++ T I EAA ++L+
Sbjct: 164 IIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLTTFD 214
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
L GEF + K+ ES + + + ++++ LE ++
Sbjct: 215 PSL------------GEF--TKKRLESRGVEVLTGTR-----VIDINERGVQLEEKMITT 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
V+W G + N + + L+ G+ DE ++GHP +F +GD +
Sbjct: 256 QTVIWAAGVQA---------NTIASTLGVTLDRGGRVIVDEFCNIEGHPEVFVIGDIANY 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
RPLP + VA QQ + + + ++ FR+ + G M +GR DA
Sbjct: 307 SKGLERPLPGVSPVAMQQGRYVAALIQGDLKNKKRKSFRYVDKGSMATIGRTDAVAQMGV 366
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + G G A +L ++++ + ++W+
Sbjct: 367 LR---MRGLFGWFAWLFVHLFYQVGFKNKVTILITWV 400
>gi|409438829|ref|ZP_11265892.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhizobium mesoamericanum STM3625]
gi|408749489|emb|CCM77068.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhizobium mesoamericanum STM3625]
Length = 423
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/431 (25%), Positives = 186/431 (43%), Gaps = 84/431 (19%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ L+D+ +F+P+LY+ +LS AW I ++D D LL
Sbjct: 28 RITLIDRRNHHLFQPLLYQVATTILSTSEIAWPIRHLYSDR---------PDVTTLL--G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ +G++ T V L SG+ + YD LVL+ GA EP V PG
Sbjct: 77 EVVGID-----TAAKAVSLRSGMTLRYDTLVLATGATHAYFGRDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R+L +E E +D+L+ +VG G +GVELA ++E +
Sbjct: 124 --LKTLEDATTIRRRLLLAFERAETETDAAIRDALLTFTIVGAGPTGVELAGIIAELARK 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V RV F +
Sbjct: 182 TLPREFRNIDT--------------------RKTRVVL---VEAGPRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLE-SQIF-EADLVLWTVGSKPLLPHVEPPNNRLH 386
S A+ + + + + ++E +G+E SQ F + ++W G + P +
Sbjct: 219 SQALQELGVELHIGERVVEC--TTEGVETSQGFIPSHTIVWAAGVQ------ASPAAKWL 270
Query: 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 446
D+ + G+ ++ L G+P +F +GD++A+ + G P+P A A QQ +A +
Sbjct: 271 DVAADRAGRVVVEKDLTAPGYPDVFVVGDTAAVMQTGGAPVPGIAPAAKQQGAYAAKVIR 330
Query: 447 AAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 505
A + P PF +++ G + +G++ A + ++ L G I +A++ L
Sbjct: 331 ARLAGDPAPPPFCYRHQGSLATIGQSAAIIDFGRIK---LKGWIAWWIWGIAHIYFLIGT 387
Query: 506 EHRLKVGVSWL 516
R V SWL
Sbjct: 388 RSRFAVAWSWL 398
>gi|407984815|ref|ZP_11165423.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Mycobacterium hassiacum DSM 44199]
gi|407373650|gb|EKF22658.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Mycobacterium hassiacum DSM 44199]
Length = 474
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/463 (24%), Positives = 182/463 (39%), Gaps = 74/463 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+PR+ I+GGGFGGL+ RL + ++D+S +F+P+LY+ +G++
Sbjct: 29 KRPRVLIVGGGFGGLFCVRRLAK------ADVDITVLDRSAGHLFQPLLYQCATGKLSIG 82
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ + A + + LL + L P A T E+ V+YD LVL
Sbjct: 83 HISRPLREEFAR-----YPNVTTLLGEAVKL---DPTARTVTALRPDETEFTVDYDVLVL 134
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNF---GKDSL--IRVAVVG 251
+ G A +A TL+DA + R L+ E G++ + + AV G
Sbjct: 135 AAGMRQSYMGNEQFARWAPGMKTLDDALEIRQRILTAFEIAETLPPGQERMDWLTFAVAG 194
Query: 252 CGYSGVELAATVSERLE------------EKGIVQAINVETTICPTGTPGNREAALKVLS 299
G +GVELA + E E+ V + + T P A L
Sbjct: 195 AGPTGVELAGQIREMATKTLAHEFHSIEPEEARVLLFDGGDRVLKTFAPDLSAKAQHSLE 254
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
V++ G V +RR G P+ G P Q
Sbjct: 255 KLGVEMHFGVHVTDVRRDG----ITVTPKDGGAP------------------------QD 286
Query: 360 FEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
F A VLWT G + P HV + + G+ + + L V GHP +F +GD
Sbjct: 287 FRARTVLWTAGVEAVPFARHVA----EVLGAQTDRAGRIKVEADLTVPGHPEVFVIGDLV 342
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 477
RD+ LP A+ A Q + + +P P+R+++LG + +A +
Sbjct: 343 G-RDN----LPGVAENAMQGGLHVAACIRRDLAGKPRKPYRYRDLGSAAYINHGNALIQ- 396
Query: 478 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSA 520
+ + + G +G A L ++ L +R+ +WL A
Sbjct: 397 --IGRIRVSGYLGWLAWGLIHIAFLTGVSNRISTVATWLASIA 437
>gi|330992282|ref|ZP_08316230.1| NADH dehydrogenase [Gluconacetobacter sp. SXCC-1]
gi|329760481|gb|EGG76977.1| NADH dehydrogenase [Gluconacetobacter sp. SXCC-1]
Length = 498
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 169/399 (42%), Gaps = 45/399 (11%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RI I+GGG GL A RL + V + + ++ LVD+S V+KPML+ +G
Sbjct: 73 QKFRIVIVGGGVAGLALATRLGNSVGRSGQA-EITLVDKSFAHVWKPMLHCFAAGTAANE 131
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + +F+ + L + P+ G V++E+ ++YD +VL
Sbjct: 132 NDRISFMSQASRHHFEFWPGEITALDRTARTISLAPIRDRLSGEVVVEA-RTLDYDAVVL 190
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
S+G+ PG AE L DA + + R F + +A+VG G +G
Sbjct: 191 SIGSRANDFGTPGVAEHCLFIDNLVDANGFNDRFRMELLRAFANGQELDIAIVGGGATGT 250
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR-- 315
+LAA + + L+ + + G + L++ +L F +
Sbjct: 251 QLAAELHKALDLASLY-------------SFGRKPPRLRITLLEAGPRILPAFPEAVSAA 297
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375
V + EA +GA+ + AD N +IL+ + A L +W G K
Sbjct: 298 AVRQLEAIGVSVRAGAMVS-GADGNG--FILK--------DGSRVPATLRVWAAGVKA-- 344
Query: 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435
P V ++ L L+ GQ E +L V IFA+GD + + + +P+ TAQ A
Sbjct: 345 PDV---TSKFGGLKLSRSGQLEVRPSLQVMEDDNIFAMGDCAFIAE---KPVAPTAQAAR 398
Query: 436 QQAD-----FAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
QQA GW + PL PF F N G ++ LG
Sbjct: 399 QQAHHLARVLPGW----MKSGNPLPPFTFHNKGAVVALG 433
>gi|357393677|ref|YP_004908518.1| putative oxidoreductase [Kitasatospora setae KM-6054]
gi|311900154|dbj|BAJ32562.1| putative oxidoreductase [Kitasatospora setae KM-6054]
Length = 454
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/461 (23%), Positives = 194/461 (42%), Gaps = 80/461 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PRI I+GGGF GL A RLE + + ++ LV ++ P+L + +G +
Sbjct: 4 ERPRILIVGGGFAGLECARRLERKLAPSEA--EISLVTPFSYQLYLPLLPHVAAGVLTPQ 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A L T + P +G++ P + + + + +YD+LVL
Sbjct: 62 SVAISLRRSLRRTHI----------VPGGAIGID-PRSKVAVVRKITDEVVAEKYDYLVL 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVG 251
+ G+ + +PG ++A TL +A + D +++L+ + D S ++ VVG
Sbjct: 111 APGSVTRTFDIPGLTDYARGMKTLAEATYIRDHVIAQLDLASASMDEQERASRLQFVVVG 170
Query: 252 CGYSGVELAATVSE----------RLEEKGIV-QAINVETTICPTGTPGNREAALKVLSA 300
GY+G E AA + RL+ + I I++ + P A+++L
Sbjct: 171 GGYAGTETAACLQRLTTAAVKRYPRLDPQLIKWHLIDIAPKLMPELGDKLGTTAMEILRK 230
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
R V + LG + VG PE+ +K + +
Sbjct: 231 RGVDVSLGV---SVAEVG--------PEN----------------------VKFTDGRSL 257
Query: 361 EADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
++WT G + PL+ ++ RG+ + V +FALGD++A
Sbjct: 258 PCRTLIWTAGVAASPLIGTLDAET---------VRGRLAVTAEMRVPQFEGVFALGDAAA 308
Query: 419 LRD---SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ D G P TAQ + +Q NL AA+ ++PL P+ ++LG ++ LG DA
Sbjct: 309 VPDLAKGDGAVCPPTAQHSARQGKRVAENLVAALRNQPLEPYFHKDLGLVVDLGGKDAVS 368
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
P GV L G + +++ + T+ + + +WL
Sbjct: 369 KPM---GVELHGAPAQVVARGYHVMAMRTNSAKYRTAANWL 406
>gi|83746521|ref|ZP_00943572.1| NADH dehydrogenase [Ralstonia solanacearum UW551]
gi|207743833|ref|YP_002260225.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum IPO1609]
gi|83726852|gb|EAP73979.1| NADH dehydrogenase [Ralstonia solanacearum UW551]
gi|206595233|emb|CAQ62160.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum IPO1609]
Length = 441
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 184/427 (43%), Gaps = 46/427 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKL--SELERRNFGKD--SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281
R RKL + + +N D + + +A+VG G +GVEL+A + N
Sbjct: 154 RFRRKLIAACMRAQNGVGDARAQVDIAIVGAGATGVELSAELR------------NTAHV 201
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341
+ G L L ++ L+ G R + V + + + D +
Sbjct: 202 LAAYGLH-----KLDPLRDIRIHLIEG----SPRILAALSERVSAETTKLLHKLNVDVIT 252
Query: 342 DKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
+ ++E+ A+K + ADL +W G + P LPL+ GQ
Sbjct: 253 GERVVEVTDSAVKTGSGKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSR 306
Query: 401 TLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
TL V+G I+A GD +S + +P AQ A QQA + L + +P+ PF F
Sbjct: 307 TLQVEGDDSIYAFGDCASCPWPEASTSVPPRAQAAHQQATYLYKALLRRLQGKPVEPFGF 366
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLT 517
++LG ++ LG A G + G IG + + RL T +R+ V +
Sbjct: 367 KDLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFV 419
Query: 518 KSAIDSV 524
+ A+D+V
Sbjct: 420 RMALDTV 426
>gi|314933153|ref|ZP_07840518.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Staphylococcus caprae C87]
gi|313653303|gb|EFS17060.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Staphylococcus caprae C87]
Length = 402
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 178/409 (43%), Gaps = 66/409 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ ++ +LG G+ GL T +L+ + ++ ++ L++++E L+E +G ++
Sbjct: 5 RKKVLVLGAGYAGLQTVTKLQKEISAEE--AEITLINKNEYHYESTWLHEASAGTIN--- 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ DLL +D+V + + N T G + +YD LV+
Sbjct: 60 ----YEDLLYPVESAVKQDKVNFVVAEVTKIDRNAKRVETDKG--------VYDYDILVV 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVGC 252
+LG + + G ++AF + + ++ R + E + N+ D + + V G
Sbjct: 108 ALGFVSETFGIEGMKDYAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVGGA 166
Query: 253 GYSGVELAATVSERLEE----KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
G++G+E +++R+ E GI Q+ V+ T EAA K+L +LV
Sbjct: 167 GFTGIEFLGELTDRIPELCSKYGIDQS-KVKLTCV--------EAAPKMLPMFSDELV-N 216
Query: 309 YFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y V + G EF+ A P +A N +++E+ E Q EA +W
Sbjct: 217 YAVNYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSG 424
T G + ++L + RG+ + L ++GH IF +GD SA +
Sbjct: 262 TAGVR---------GSKLMEESFEGVKRGRIINKQDLTIEGHDDIFVIGDCSAFIPAGEE 312
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ + N+ +N F++ N G + LG +D
Sbjct: 313 RPLPTTAQIAMQQGEHVAKNIKHILNGESKEDFQYVNRGTVCSLGAHDG 361
>gi|398330939|ref|ZP_10515644.1| NADH dehydrogenase [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 422
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/461 (21%), Positives = 186/461 (40%), Gaps = 83/461 (18%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D +K ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 DSRKRKVVVIGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI------ 189
+IA L+ +N + V L + +
Sbjct: 58 PADIAIPIRSLVGEK-------------------LNVTVVLGEATKVDLATKTVYYQNTS 98
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----S 243
YD+L+LS GA+ ++ L+DA ++ KL E+ D +
Sbjct: 99 TNYDYLILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKLLISFEKAELSGDPEVVKA 158
Query: 244 LIRVAVVGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKV 297
L+ ++G G +GVELA +++E R E I A++ T I EAA ++
Sbjct: 159 LLNYVIIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRL 209
Query: 298 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357
L A L GEF + K+ ES + + + ++++ LE
Sbjct: 210 LMAFDPSL------------GEF--TKKRLESRGVEVLTGTR-----VIDINERGVQLEG 250
Query: 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGD 415
++ + V+W G + N L L+ G+ DE ++GHP +F +GD
Sbjct: 251 KMIPTETVIWAAGVQA--------NGIASTLGVTLDRGGRVIVDEFCNIEGHPEVFVIGD 302
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ RPLP + VA QQ + + + ++ FR+ + G M +GR DA
Sbjct: 303 IANYSKDLERPLPGVSPVAMQQGRYVAALIQGDLKNKKRKSFRYIDKGSMATIGRTDAVA 362
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
++ + G G A +L ++++ + ++W+
Sbjct: 363 QVGVLK---MKGLFGWLAWLFVHLFYQVGFKNKVTILLTWV 400
>gi|427704003|ref|YP_007047225.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
gi|427347171|gb|AFY29884.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
Length = 483
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 125/475 (26%), Positives = 192/475 (40%), Gaps = 71/475 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K P + I+GGGF GL A RL + +V LVD+ +F+P+LY++ SG V
Sbjct: 18 KGWPHVVIVGGGFAGLKAAHRLAG------QPVRVTLVDKRNFNLFQPLLYQVASGLVSE 71
Query: 137 WEIAPRFADLLANTG-VQ-FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
++A LLA VQ + V L + + N + YD
Sbjct: 72 ADVATPLRRLLARAANVQVLLGEVVDLDAATREVVFNDRR---------------LRYDS 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDS-----LIRVA 248
L+L+ G+ E A P LE A + R+ L+ LE D L V
Sbjct: 117 LILATGSGSTYFGHEEWRELAPPMKILEHADEIRRRVLTALEEAEQTPDPERCRFLQSVV 176
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG--TPGNR----------EAALK 296
VVG G SG ELA +++E + ++ +C PG+R +AA
Sbjct: 177 VVGGGPSGCELAGSINELMRHAARRDFRQLDPGLCRVVLVDPGDRVLRAMDPSLSQAAGD 236
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L +R V+LVLG V+ I G + K +G P+
Sbjct: 237 YLVSRGVELVLGGRVQSIE-AGRLTVTFKSSPAGT-PS---------------------- 272
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD- 415
++ EA + W+ G + H+ ++ G+ + + GHP I +GD
Sbjct: 273 ERVLEAATICWSAGVRA--SHLGKLLAERTGCAVDRGGRVVVEPDFSIAGHPEIRVVGDL 330
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
S + G+PLP A A Q + +L A + R PFR+ + G M ++G A
Sbjct: 331 CSYAHTADGQPLPGMAGPAVQMGGWVALDLLAQLGGRRQAPFRWFDFGSMAVIGPLCAVA 390
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQST 530
+ G+ + G +G LA+L +P +E+RL + WL A A L T
Sbjct: 391 D---LRGLKVTGALGWLLWGLAHLAFMPANENRLTLLTKWLWMIATQQRASLLIT 442
>gi|386332869|ref|YP_006029038.1| NADH dehydrogenase [Ralstonia solanacearum Po82]
gi|334195317|gb|AEG68502.1| NADH dehydrogenase [Ralstonia solanacearum Po82]
Length = 441
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 184/427 (43%), Gaps = 46/427 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKL--SELERRNFGKD--SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281
R RKL + + +N D + + +A+VG G +GVEL+A + N
Sbjct: 154 RFRRKLIAACMRAQNGVGDARAQVDIAIVGAGATGVELSAELR------------NTAHV 201
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341
+ G L L ++ L+ G R + V + + + D +
Sbjct: 202 LAAYGLH-----KLDPLRDIRIHLIEG----SPRILAALSERVSAETTKLLHKLNVDVIT 252
Query: 342 DKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
+ ++E+ A+K + ADL +W G + P LPL+ GQ
Sbjct: 253 GERVVEVTDSAVKTGSGKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSR 306
Query: 401 TLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
TL V+G I+A GD +S + +P AQ A QQA + L + +P+ PF F
Sbjct: 307 TLQVEGDDAIYAFGDCASCPWPEASTSVPPRAQAAHQQATYLYKALCRRLQGKPVEPFGF 366
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLT 517
++LG ++ LG A G + G IG + + RL T +R+ V +
Sbjct: 367 KDLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFV 419
Query: 518 KSAIDSV 524
+ A+D+V
Sbjct: 420 RMALDTV 426
>gi|385206453|ref|ZP_10033323.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. Ch1-1]
gi|385186344|gb|EIF35618.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. Ch1-1]
Length = 449
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 165/384 (42%), Gaps = 47/384 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 34 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
G + G +L E L EYD L++++G+ V GA+EF+ T+ A R
Sbjct: 94 RLTLGTVLDDDGAELLPEREL--EYDTLIIAIGSTTAFFGVKGASEFSLALDTVSQAERF 151
Query: 228 DRKLSELERRNFGK---------------DSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
++L R + + I+VA+VG G +GVEL+A E +
Sbjct: 152 RKRLIAACMRAEHQVHEPVESAPGTPSTDEPRIQVAIVGGGATGVELSA------ELRNT 205
Query: 273 VQAINVETTICPTGTPGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGA 331
Q ++ L L R V +VL R + + V +
Sbjct: 206 AQVLSA--------------YGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAEL 249
Query: 332 IPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390
+ + + + + E+ P I+ + ADL +W G K P + + L LP+
Sbjct: 250 LTKLGVKLMTSETVAEVAPGVIRTASGKTVRADLTVWAAGIKA--PAIL---SELDGLPV 304
Query: 391 NARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAI 449
N GQ TL + IFALGD +A + R +P AQ A QQA F L A +
Sbjct: 305 NRLGQLVVRRTLQTEIDDNIFALGDCAACPWPGNERNVPPRAQAAHQQASFLMKALTARL 364
Query: 450 NDRPLLPFRFQNLGEMMILGRNDA 473
+ RPL F +++ G ++ LG A
Sbjct: 365 DGRPLPEFTYRDFGSLVSLGHFSA 388
>gi|300777989|ref|ZP_07087847.1| NADH dehydrogenase [Chryseobacterium gleum ATCC 35910]
gi|300503499|gb|EFK34639.1| NADH dehydrogenase [Chryseobacterium gleum ATCC 35910]
Length = 423
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 111/460 (24%), Positives = 191/460 (41%), Gaps = 84/460 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I I+GGGF G+ ++SL ++DK+ ++ LVD++ F P++Y++ + ++A
Sbjct: 2 KKHILIVGGGFAGINL---IKSL--KNDKRFKITLVDKNNYHFFPPLIYQVATSFIEASN 56
Query: 139 IAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ F L +N V+F + + P + T+ ++G + YD+LVL
Sbjct: 57 ISYPFRKLFSNNRNVKFHMGSLIRVNPENK-------------TIDTDTGTL-GYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVG 251
+LG E + + A P +E+A + + L LE KD L + + G
Sbjct: 103 ALGTESNFFGMENVKKCALPMKNIEEALYLRNHILLTLEEAARNKDIKQAEKLQNIVIAG 162
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVELA ++E R A K K+ L Y +
Sbjct: 163 GGPTGVELAGMLAEM-----------------------GRYIAQKEYPEIKLGLSNLYLI 199
Query: 312 RCI-------RRVGEFEASVKQPESGA--IPNIAA-DKNSDKYILELQPAIKGLESQIFE 361
+ ++ + A K E G + N++ D +K IL + I E
Sbjct: 200 DALPTLLSPMSKLAQKTAYEKLKELGVKIVLNVSVKDYTDNKVILS--------DGNIIE 251
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSA 418
+ ++WT G + E P LP N+ G+ D V+G I+ALGD +
Sbjct: 252 TETLIWTSG----VIGKEVPG-----LPENSIGKGRRILVDAYNKVEGTNTIYALGDIAL 302
Query: 419 LRDSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ P P AQVA QQ N + + L PF + + G M I+ + +A V
Sbjct: 303 MLSEEKYPKGHPQLAQVAIQQGKNLAANFKRIEDGKVLEPFHYNDKGSMAIISKYNAVVD 362
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + +G I ++I L ++++++ V W
Sbjct: 363 ---LPKHSFNGFIAWLTWLFIHIIPLVGFKNKIQLAVDWF 399
>gi|420199644|ref|ZP_14705315.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM031]
gi|394271394|gb|EJE15887.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM031]
Length = 402
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKL-LCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKDKVNFAVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G E AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV- 215
Query: 308 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y V+ + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSV 260
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
WT G + H+ + RG+ + L ++GH IF +GD SA + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|348170728|ref|ZP_08877622.1| NADH dehydrogenase [Saccharopolyspora spinosa NRRL 18395]
Length = 446
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/466 (24%), Positives = 182/466 (39%), Gaps = 86/466 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PR+ I+GGG GL ALRL+ + + K V ++D ++P L E +G ++
Sbjct: 3 EPRVVIIGGGHVGLTLALRLQRKMKPGEAK--VTVIDTQPHMTYQPFLPEAAAGSLEPRH 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--YDWLV 196
+ + L N C V+G T L G + YD LV
Sbjct: 61 VVVPLREALRN-------------CEVLTAQVSGIDHARQRLTATLGDGKVERFGYDMLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDAC--------RVDRKLSELERRNFGKDSLIRVA 248
+ G+ + +PG AE F T+ +A R+D S + R + L+
Sbjct: 108 VVPGSISRALPIPGLAEQGVGFKTIGEAIYLRNHVLSRLDIAASTTDERL--RRRLLTFV 165
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETT------------ICPTGTPGNREAALK 296
VG GY+G+E A + E + I V I P +P E
Sbjct: 166 FVGGGYAGIEAMAEL-ESMARYAIRSYPQVSAQEMRWVLVEAMGRIMPEVSPPMSEYTKG 224
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L R +++ L N A D ++ A+ +
Sbjct: 225 RLEERGIEVKL--------------------------NTTAKSFVDGHV-----ALS--D 251
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
F+AD V+WT G KP P DLP +A+G+ E L V+G +F+ GD
Sbjct: 252 GDEFDADTVVWTAGVKPH------PMLEDSDLPRDAKGRVECTARLQVRGTHNVFSAGDC 305
Query: 417 SALRD-SSGRP---LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
+A+ D +S P +AQ A +QA N+ A + L+ ++ + G + LG
Sbjct: 306 AAVPDLTSSDPDALCSPSAQHAVRQAKVLADNILAMLRGEQLVNYKHKYAGSVAGLGLFQ 365
Query: 473 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
A V GV L G + +L+R+PT H+ ++ WL +
Sbjct: 366 GAAE---VHGVKLKGFPAWLLHRGYHLMRMPTASHKARILGDWLME 408
>gi|260429585|ref|ZP_05783562.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Citreicella sp. SE45]
gi|260420208|gb|EEX13461.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Citreicella sp. SE45]
Length = 428
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/421 (24%), Positives = 174/421 (41%), Gaps = 50/421 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K ++ LVDQ +F+P+LY++ + + EIA LL + ++ V+ L ++
Sbjct: 26 KDVEITLVDQRNHHLFQPLLYQVATTILPTSEIAWPIRGLLRD------REDVRTLM-AE 78
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
V+ H G VEYD LVL+ GA A TLEDA
Sbjct: 79 VEAVDQDNRRVH-----FSDGGSVEYDTLVLATGARHSYFGNDDWETAAPGLKTLEDATA 133
Query: 227 VDRK-LSELERRNFGKD-----SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280
+ R+ LS E D +L+ AVVG G +GVEL ++E + + + N++T
Sbjct: 134 IRRRVLSAFEAAERSDDPREREALLTFAVVGAGPTGVELVGIIAELAQTSLVREFRNIDT 193
Query: 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 340
R+A + ++ A R + F S+ +GA+ + +
Sbjct: 194 ----------RQARVLLVEA------------GPRVLPAFPESLSDYAAGALKRLGVEVR 231
Query: 341 SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
+ + P L ++ A +W G K + + + G+ E
Sbjct: 232 TGTPVTHCDPEGITLGTEHIPARTAIWAAGVKA------SRAAQWLGVAGDRAGRVPVTE 285
Query: 401 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRF 459
L ++GHP IF +GD++A ++ G+P+P A A QQ +F L A R F +
Sbjct: 286 DLTLEGHPEIFVIGDTAAATNADGKPVPGIAPAAKQQGEFVARKLKARFGLRRDPGRFVY 345
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKS 519
++ G + +GR A + L G + +A++ L +R+ V +SWL
Sbjct: 346 RHQGSLATIGRKAAVADFGRIR---LKGALAWWVWGIAHIYFLIGTRNRMAVALSWLWSH 402
Query: 520 A 520
A
Sbjct: 403 A 403
>gi|224076814|ref|XP_002305005.1| predicted protein [Populus trichocarpa]
gi|222847969|gb|EEE85516.1| predicted protein [Populus trichocarpa]
Length = 451
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 122/485 (25%), Positives = 196/485 (40%), Gaps = 102/485 (21%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ +LG G+ L++ ++ V+ + VF P+L G ++
Sbjct: 12 EKPRVVVLGTGWAACRFMKGLDTRIYD------VVCISPRNHMVFTPLLASTCVGTLEFR 65
Query: 138 EIAP---RFADLLANTGVQFF---------KDRVKLLCPSDHLGVNGPMACTHGGTVLLE 185
+A R LA + +F D+ ++ C + ++GG
Sbjct: 66 SVAEPVNRIQSALATSPNSYFYMASCFGIDTDKHEVYCET----------VSNGGLPHDP 115
Query: 186 SGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--SELERRNFG--- 240
V YD LV++ GAEP + G E AF + A + +KL + + N G
Sbjct: 116 YQFKVAYDKLVIAAGAEPLTFGIKGVKEHAFFLREVNHAQEIRKKLLLNLMLSENPGISE 175
Query: 241 --KDSLIRVAVVGCGYSGVELAATVSERLEE---------KGIVQAINVETT-ICPTGTP 288
K L+ V+G G +GVE + +S+ ++ K V+ +E + I +
Sbjct: 176 EEKKHLLHCVVIGGGPTGVEFSGELSDFIKRDVQDRYTHVKDYVKVTLIEASEILSSFDV 235
Query: 289 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 348
G R+ A L+ V L+ G VK+ I + +D+ + Y
Sbjct: 236 GLRQYATNHLTKSGVSLMRGV--------------VKEVHPKKI--VLSDETNVPY---- 275
Query: 349 QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHP 408
L++W+ G P + DLP G+ DE L V
Sbjct: 276 --------------GLLVWSTGVGP------SQFVKSLDLPKAPGGRIGIDEWLRVSSVE 315
Query: 409 RIFALGDSSALRDSSGRP-LPATAQVAFQQADFA-----------GWNLWAAINDRPLL- 455
+FALGD + ++SGRP LPA AQVA +Q F G ++A D PL
Sbjct: 316 DVFALGDCAGFLENSGRPVLPALAQVAERQGKFLVKFLNKIGKKDGGKAFSA-KDIPLGD 374
Query: 456 PFRFQNLGEMMILGRNDAAV---SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 512
PF +++LG M +GR A V +GV+L G + + AYL R+ + +R V
Sbjct: 375 PFVYKHLGSMASVGRYKALVDLRQSKDAKGVSLAGFVSWLIWRSAYLTRVISWRNRFYVA 434
Query: 513 VSWLT 517
V+W T
Sbjct: 435 VNWAT 439
>gi|299536093|ref|ZP_07049410.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZC1]
gi|424738592|ref|ZP_18167024.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZB2]
gi|298728517|gb|EFI69075.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZC1]
gi|422947431|gb|EKU41826.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZB2]
Length = 394
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 164/401 (40%), Gaps = 51/401 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+ G+ TAL + D+ K + +V+Q L+ L G + +A
Sbjct: 4 EIVILGAGYAGVLTALTARKYLSADEAK--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V V L++G + YD LV+SLG
Sbjct: 62 LPLKKIFKGLDIDLHIAKVSKFNVDTK-------------KVDLDNGYTLTYDTLVVSLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFGKDSLIRVAVV-GCGYSGVE 258
++ +PG E + ++ DA ++++ + + ++ KD V+ G G +GVE
Sbjct: 109 SQTGFFGIPGLEENSMVLKSVNDANKINKHIEDRIKAYAQSKDEADATIVIGGGGLTGVE 168
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
L + + + +N EA K+L L+ +R
Sbjct: 169 LVGEIVDNFPKIAAKHGVNFADLKIKL-----VEAGPKILPVLPDTLIQRATESLTKRGV 223
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
EF P +G N+ + K+ + + A+ ++WT G P LP V
Sbjct: 224 EFITGT--PVTGVDGNVISLKDREPIV----------------ANTLVWTGGVAP-LPIV 264
Query: 379 EPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA-TAQVAF 435
L A RG+A +E L H +F +GD+S AL GRPL A TAQVA+
Sbjct: 265 GESG-------LAADRGKATINEFLQSTSHEDVFVIGDASVALPADGGRPLYAPTAQVAW 317
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
Q + AG+N++A ++ + F N G + LGR DA +
Sbjct: 318 QMGECAGYNVFAQYKNQDMKAFSAVNSGTLASLGRKDAVAT 358
>gi|427417328|ref|ZP_18907511.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
gi|425760041|gb|EKV00894.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
Length = 473
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/438 (25%), Positives = 182/438 (41%), Gaps = 80/438 (18%)
Query: 69 SQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLY 127
+Q T K + I+GGGF GLY A L K P +V L+D+ +F+P+LY
Sbjct: 12 AQKTTAQQKSLHHVVIVGGGFAGLYAAKSL-------GKAPVRVTLIDKRNFHLFQPLLY 64
Query: 128 ELLSGEVDAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLES 186
++ +G + A +I+ +L+ V+ V + P V L+
Sbjct: 65 QVATGGLSAGDISSPLRSVLSRQKNVKVLMGEVVDVDPDAQ-------------KVSLKR 111
Query: 187 GLIVEYDWLVLSLGAEPKL-------DVVPGAAEFAFPFSTLEDACRVDRKL------SE 233
+++YD L+L+ G+ DV PG T+EDA V R++ +E
Sbjct: 112 NEVIDYDSLILATGSSHHYFGNDHWSDVAPG-------MKTIEDALEVRRRIFLAFEAAE 164
Query: 234 LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE--KGIVQAIN-VETTICPTGTPGN 290
E + +L+ VVG G +GVELA ++E E K I+ ET I
Sbjct: 165 KETDPERRKALLTFLVVGAGPTGVELAGALAELAYETIKDDFSDIDPQETKIILL----- 219
Query: 291 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY---ILE 347
E +VL L + + ++G V+ + NI D S K+ + +
Sbjct: 220 -EGMDRVLPPYPTDLSVAAKA-SLEKLG-----VEVRTQSLVTNIDGDTVSIKHDGNVTD 272
Query: 348 LQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 405
+Q A VLW G K PL + D G+ D L V
Sbjct: 273 MQ------------ACTVLWAAGIKASPLGKTIAEKTGAETD----RIGRVIVDSDLSVP 316
Query: 406 GHPRIFALGDSS--ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
+P ++ GD + A + + G+P+P TA VA + + + +P+ F ++N G
Sbjct: 317 NYPNLYIGGDLAHFAHQGNEGKPVPGTAAVAMDMGSYLATAIKTKLAKKPVPAFNYRNKG 376
Query: 464 EMMILGRNDAAVSPSFVE 481
+ ++GRN+A +F++
Sbjct: 377 SLAVIGRNEAVADLNFMK 394
>gi|320108327|ref|YP_004183917.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Terriglobus saanensis SP1PR4]
gi|319926848|gb|ADV83923.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Terriglobus saanensis SP1PR4]
Length = 445
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/447 (21%), Positives = 179/447 (40%), Gaps = 59/447 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ R+ ILG GF GL A L D + LVD+ F+P+LY++ +
Sbjct: 8 EQKRVLILGAGFAGLNVAKGLA------DAPVNLTLVDRKNHHTFQPLLYQVALAVLSPA 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+IA +L + + D V + V L+SG ++ YD+LV+
Sbjct: 62 DIAQPIRAILRSPNTEVLMDEVIAVDKDTR-------------RVTLKSGTVLRYDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVVG 251
+ G+ A A T+EDA + R+ L+E E + G+ + ++G
Sbjct: 109 ATGSTHSYFGRDDWAALAPGLKTIEDALEIRRRVLLAFELAENEMQETGQHPALNFVIIG 168
Query: 252 CGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G +GVELA ++S+ +L K + IN T E + VLS
Sbjct: 169 GGPTGVELAGSISDIAKLYMKSDFKHINPSTAQVTI-----LEGSPHVLSM--------- 214
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369
+ +++ + + + ++ ++ +++P + + ++ + LW
Sbjct: 215 ----------YPEDLQKKALEQLAGLGVNVRTNAHVTDVKPGYVMVGDEKIDSVVTLWAA 264
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G + P +L + + RG D L GH IF GD + + + G+ +P
Sbjct: 265 GVQ------ASPLGKLLGVETDRRGCVVVDGYLHPAGHEEIFICGDLAHV-EIDGKQVPG 317
Query: 430 TAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 488
AQ A Q + ++ + P+ F + + G+M +GR A ++ L G
Sbjct: 318 VAQPAMQMGTYTAESIKHLLRGEPIKKTFHYFDKGDMATIGRKAAVARVAWPFKADLSGF 377
Query: 489 IGHSARKLAYLIRLPTDEHRLKVGVSW 515
A + ++ L +RL V SW
Sbjct: 378 PAWIAWLIVHIFFLIGFRNRLSVFRSW 404
>gi|170696960|ref|ZP_02888056.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
gi|170138134|gb|EDT06366.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
Length = 452
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 175/415 (42%), Gaps = 57/415 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L + L +YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTATIAAVQDADGTEILPQREL--DYDELVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + I + V
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPARPAAPICINV 191
Query: 250 VGCGYSGVELAATVSERLEE------KGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
+G G +GVELAA + +++ K +V A +V + E ++L A
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLI--------EGGPRILPA--- 240
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEA 362
+A + + + D +D + E+ A+ + +
Sbjct: 241 ----------------LDARLSARMHAQLRTLNVDVLTDTRVAEVGADAVTTAAGERLAS 284
Query: 363 DLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL- 419
D+ +W G V P L D+ LN Q +TL P ++A GD +A
Sbjct: 285 DITIWAAG-------VAGPAILRELGDIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACP 337
Query: 420 -RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
D+SG LP AQVA QQA + G L + +P+ F F++ G ++ LG+ A
Sbjct: 338 SADASGF-LPPRAQVAHQQAVYLGEALARRLAGKPVAGFTFRDAGTVVSLGQAGA 391
>gi|187929513|ref|YP_001900000.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ralstonia pickettii 12J]
gi|309781711|ref|ZP_07676444.1| NADH dehydrogenase [Ralstonia sp. 5_7_47FAA]
gi|404396628|ref|ZP_10988422.1| hypothetical protein HMPREF0989_04585 [Ralstonia sp. 5_2_56FAA]
gi|187726403|gb|ACD27568.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Ralstonia pickettii 12J]
gi|308919352|gb|EFP65016.1| NADH dehydrogenase [Ralstonia sp. 5_7_47FAA]
gi|348610575|gb|EGY60263.1| hypothetical protein HMPREF0989_04585 [Ralstonia sp. 5_2_56FAA]
Length = 444
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/401 (27%), Positives = 173/401 (43%), Gaps = 69/401 (17%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCP-SDHL 168
Q++LVD++ ++KP+L+E+ +G +D +A G +F + +K L + +
Sbjct: 43 QIILVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRVAKSI 102
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
V+G + G VL E + YD LVLS+G+ VPG AE A T A R
Sbjct: 103 MVSGCVDAD-GTEVLPERA--ISYDTLVLSIGSVTHFFGVPGTAEHAIALDTAWQAERFR 159
Query: 229 RKL--SELERRNFGKDS--LIRVAVVGCGYSGVELAATVS-----------ERLEEKGIV 273
R+L + + +N D+ + +A+VG G +GVEL+A + +L+ + +
Sbjct: 160 RRLIAACMRAQNGVGDARPQVDIAIVGAGATGVELSAELRNTAHVLAAYGLHKLDPRHDI 219
Query: 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--RRVGEFEASVKQPESGA 331
+ +E G P + +SA +L+ V I RV E AS
Sbjct: 220 RIHLIE------GGPRILPVLKERISAATTELLRKLDVDVITSERVTEVTAS-------- 265
Query: 332 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391
A + S K+I ADL +W G + P LP+N
Sbjct: 266 ----AVNTASGKFI---------------PADLTVWAAGIR------APSVLGELGLPVN 300
Query: 392 ARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450
GQ TL V+G I+A GD +S + +P AQ A QQA + L ++
Sbjct: 301 KLGQVIVSRTLQVEGDDSIYAFGDCASCPWPEASSSVPPRAQAAHQQATYLFDALRKRMD 360
Query: 451 DRPLLPFRFQNLGEMMILGRNDAAVS--------PSFVEGV 483
RP+ PF F++LG ++ LG A S F+EG+
Sbjct: 361 GRPVQPFAFKDLGSLVSLGHFSAVGSLMGGLIGGSMFIEGL 401
>gi|427738976|ref|YP_007058520.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
gi|427374017|gb|AFY57973.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
Length = 425
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 193/450 (42%), Gaps = 67/450 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ I+G GF G+ A +L VLL+D+ F PMLY++ + +
Sbjct: 4 QKPRVVIIGAGFAGVEVAKKL------GKYGVNVLLIDRHNYHTFVPMLYQVATAVLYPH 57
Query: 138 EIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I LL N V F + V+ + + + C + ++Y++LV
Sbjct: 58 QIIYPLRRLLRNLPTVNFLQADVR------KVDFDNQIVCA--------DNVAIDYNYLV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--RNFGKDS---LIRVAVV 250
++ G++ + V GA E +FP TL DA + ++ LS E+ + KD L+ +V
Sbjct: 104 IATGSQSQFLGVTGAPENSFPMRTLTDAIAIRNQVLSRFEQATKVTNKDEQTRLLTFVIV 163
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG-- 308
G G +G+ELA +++E ++ A+ + PT P SAR + + G
Sbjct: 164 GGGATGIELAGSLNELIQS-----ALKKD---YPTLNPD---------SARVILIQSGDR 206
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPN-IAADKNSDKYILELQPAIKGLE-SQIFEADLVL 366
F +++G++ E + + I NS + ++ P LE + + D V+
Sbjct: 207 LFPSYPQKLGKYT------EKWLLHHGIKVHLNSK--VSKVTPEAVYLEDNTVIFTDTVI 258
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
WT G P + + A+ + ++TL + GH I+ +GD S + +
Sbjct: 259 WTAGVLAATPETK------QSVKTAAKEKVIVEQTLQLCGHKNIYGVGDVSYV--DTQEE 310
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
AQ A QQ A N+ + F + N G + I+ ++ A V + +
Sbjct: 311 FNGVAQEAIQQGKTAADNILLQMRGESPKSFNYFNKGRLAIIAKH-AGVGK--IGKFPIK 367
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G I +L+ LP +RL V +WL
Sbjct: 368 GFIAWFLWLEVHLLYLPGIRNRLGVLFNWL 397
>gi|375100441|ref|ZP_09746704.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
gi|374661173|gb|EHR61051.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
Length = 452
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/463 (24%), Positives = 198/463 (42%), Gaps = 84/463 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI ++GGGF G+ RLE L+ D+ + LV ++ P+L ++ +G +
Sbjct: 2 EPPRILVVGGGFAGVECVRRLERLLTPDEAS--ITLVAARNYQLYLPLLPQVAAGMLTPQ 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVE-YDWL 195
+A LL T V P LGV+ C G L + VE Y++L
Sbjct: 60 SVAVSLRRLLRRTRV----------APGAALGVDLDAKVCVVRG---LSGRIRVEPYEYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSEL-------ERRNFGKDSLIRV 247
VL+ G+ + +PG AE A TL +A + D +++L ER +++ ++
Sbjct: 107 VLAPGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAAPERDE--QEARLQF 164
Query: 248 AVVGCGYSGVELAATVSE----------RLEEKGIV-QAINVETTICPTGTPGNREAALK 296
VVG GYSG E AA + L+ I +++ + P E A
Sbjct: 165 VVVGGGYSGTETAAALHRLTSAAAGRYPGLDPHAIKWHLVDIAPKLMPELGDDLGEKATD 224
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
+L R + + LG V A+ +++ ++ +
Sbjct: 225 LLRQRGIDVSLGVSV-------------------------AEADAET--------VRLTD 251
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
++ ++WT G +P P ++ RG+ + E + V P +FA+GD+
Sbjct: 252 GRVLPCHTLIWTAGVRPS-PLIDTLGAE------TVRGRLKVTENMDVPERPGVFAVGDA 304
Query: 417 SALRDSS---GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
+A+ D S G P TAQ A +Q N+ A + +P+ P++ +++G ++ LG DA
Sbjct: 305 AAVPDISKGDGAVCPPTAQHAQRQGRAVARNVAATLRGQPMEPYQHRDMGLVVDLGGTDA 364
Query: 474 AVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+P GV L G + + +++ L T R +V +W+
Sbjct: 365 VANPL---GVPLTGLPAQAVTRGYHMVALHTSVARARVLTNWV 404
>gi|425737966|ref|ZP_18856235.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus
massiliensis S46]
gi|425480871|gb|EKU48034.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus
massiliensis S46]
Length = 402
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ L+ +D +V L+++++ L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTITKLQKLISAED--AEVTLINKNDYHYESTWLHEASAGTINY 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E+ + N+ V F K V + N T G I ++D LV
Sbjct: 61 EELLYPIETAIDNSKVNFVKAEVT------KIDRNAKKVETDSG--------IYDFDILV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVGC 252
++LG + + G ++AF + + ++ R K + ++ + + V G
Sbjct: 107 VALGFISETFGIEGMKDYAFQIENVLTSRKLSRHIEDKFANYASSKEKDENDLAILVGGA 166
Query: 253 GYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G++G+E + R+ E K V V T EAA K+L +LV Y
Sbjct: 167 GFTGIEFLGELVTRIPELCNKYGVDQDKVRITCV--------EAAPKMLPMFSDELV-NY 217
Query: 310 FVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
V + G EF+ A P +AA N +++++ + Q EA+ +W
Sbjct: 218 AVSFLEDRGVEFKI--------ATPIVAA--NEKGFVVKVDD-----KEQQLEANTAVWA 262
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
G + + L + RG+ + L +KG+ IF +GD SA + + R
Sbjct: 263 AGVR---------GSELMEESFEGVKRGRIVNESDLTIKGYDDIFVIGDCSAFIPEGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N P F + + G + LG +D
Sbjct: 314 PLPTTAQIAMQQGEATAKNIANILNGNPTDKFEYIDRGTVCSLGAHDG 361
>gi|456862519|gb|EMF81062.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira weilii
serovar Topaz str. LT2116]
Length = 423
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/456 (21%), Positives = 186/456 (40%), Gaps = 73/456 (16%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKIVVIGAGFGGLQVVKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDW 194
+IA L+ +R+ + V G T + YD+
Sbjct: 58 PADIAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSTNYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVA 248
L+LS GA+ ++ L+DA ++ KL E+ D +L+
Sbjct: 104 LILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKLLISFEKAELSGDPEVVKALLNYV 163
Query: 249 VVGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
++G G +GVELA +++E R E I A++ T I EAA ++L
Sbjct: 164 IIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLMTFD 214
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
L GEF + K+ ES + + + ++++ LE ++
Sbjct: 215 PSL------------GEF--TKKRLESRGVEVLTGTR-----VIDINEQGVQLEGKMIPT 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+ V+W G + N L L+ G+ DE V+GHP +F +GD +
Sbjct: 256 ETVIWAAGVQA--------NGIASTLGVTLDRGGRVIVDEFCNVEGHPEVFVIGDIANYS 307
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
RPLP + VA QQ + + + ++ FR+ + G M +GR DA +
Sbjct: 308 KGLERPLPGVSPVAMQQGRYVAALIQGDLKNKKRKSFRYVDKGSMATIGRTDAVAQVGVL 367
Query: 481 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + G G A +L ++++ + ++W+
Sbjct: 368 K---MKGLFGWLAWLFVHLFYQVGFKNKVTILITWV 400
>gi|300913967|ref|ZP_07131284.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter sp. X561]
gi|300890652|gb|EFK85797.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter sp. X561]
Length = 594
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/437 (21%), Positives = 177/437 (40%), Gaps = 80/437 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+G G+GG++ A +L +++D +++L+D+ L+E+ ++
Sbjct: 3 EHKRIVIVGAGYGGVHAA-KLLHKKFKNDSNIEIILIDKKPYHTLLTDLHEVAGSRIEPD 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ + AN V+ D V+ + +G +G YD+L
Sbjct: 62 SVRVYLHKIFANKKVEVIIDEVEKIDYEKQSVIGKDGEY----------------NYDYL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----NFGKDSLIRVAVVG 251
+L +G+EP +PG E+ F TLE A + + E+ R+ + + ++ V G
Sbjct: 106 ILGIGSEPCDFGIPGVFEYGFTVGTLEAAIKTREHIEEMFRKASVESNAEKKMLTFVVAG 165
Query: 252 CGYSGVELAATVSE---------RLEEKGI-VQAINVETTICPTGTPGNREAALKVLSAR 301
G++G+E A + E L+ + + I TI P A K L+ +
Sbjct: 166 AGFTGIETAGELMEWTKSLCDKYHLDHNDVKIMVIEALNTILPNLNAKLANKAAKFLAKK 225
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
V+++ + I +A D YI+ L+ K E
Sbjct: 226 GVEVL---------------------TNAPIVEVAKD-----YIV-LKDGRK------IE 252
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
++WT G + N + + L L R + +T+E + G I+ +GD A
Sbjct: 253 TKTLIWTCGVQ--------GNKCVENFGLELGRRSRVQTNEYMQAVGKENIYVIGD-LAY 303
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
+ G+P+P + A Q A+ N+ A I PF+ + G M+ +G A
Sbjct: 304 YELDGKPIPQIVETALQSAETVVHNIVADIKGGEKQPFKPKYHGFMVSIGSRYAVAE--- 360
Query: 480 VEGVTLDGPIGHSARKL 496
+ GV+L G + + + L
Sbjct: 361 LMGVSLTGFLAMAMKHL 377
>gi|257068524|ref|YP_003154779.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium faecium
DSM 4810]
gi|256559342|gb|ACU85189.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium faecium
DSM 4810]
Length = 457
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 173/425 (40%), Gaps = 89/425 (20%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILGGG GL TA L + + + +VD + P L E+ +G +D
Sbjct: 8 KPHVLILGGGSVGLTTASELRKTLGAE---VAITVVDPRPYMTYAPFLPEVGAGSIDPRN 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE----SGLIVEYDW 194
+ +L G + V + +++ TV++E L + YD+
Sbjct: 65 VLAPLRKILP--GAKVVTGSVSAIRSAEN-------------TVVVELEDEEKLEITYDY 109
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VA 248
LV+ LGA P+L +PG AE A F +E+A V DR L+ L KD +R
Sbjct: 110 LVVGLGAVPRLLPIPGLAENAIGFKQVEEATAVRDRILANLGEAATTKDPALRKRLLTFT 169
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETT------------ICPTGTPGNREAALK 296
+G G++G E A + +E + + ++ ++ I P T R L
Sbjct: 170 FIGGGFAGGE-AVSEAEDMVRDALRYYPDLHSSDIRFVLVDGAPFIFPELTEDQRAYVLN 228
Query: 297 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356
L R +++ L F + E+G I D+
Sbjct: 229 QLRERGIEVKLETF-------------LNSAENGVIKTSDGDE----------------- 258
Query: 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-----GQAETDETLCVKGH---- 407
FE+DL++W G KP P + ++ + DLP+ G+ E L V G
Sbjct: 259 ---FESDLLVWNAGVKP-APVLS--DSEVSDLPVVTERGPLMGKLEALPDLRVNGADGPL 312
Query: 408 PRIFALGDSSALRD---SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 464
+F GD +A+ D G+ P AQ A +QA N+ +I RPL+ + +NLG
Sbjct: 313 DDVFTGGDCAAVPDLASGEGKFCPPNAQHAVRQAKRLADNIARSIQGRPLVDYYHRNLGV 372
Query: 465 MMILG 469
M LG
Sbjct: 373 MATLG 377
>gi|418620948|ref|ZP_13183738.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU123]
gi|374830807|gb|EHR94567.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU123]
Length = 428
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 20 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 75
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL K++V + + N T G
Sbjct: 76 LHEASAGTIN-------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG---- 124
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 125 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 179
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 180 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 231
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 232 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 275
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++GH IF +GD
Sbjct: 276 EKQQLEAGTFVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGD 328
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 329 CSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 387
>gi|220916900|ref|YP_002492204.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219954754|gb|ACL65138.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 453
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 163/405 (40%), Gaps = 56/405 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF GLY A L ++ LVD+ +F+P+LY++ + +
Sbjct: 9 QQTPHVVIVGGGFAGLYAARELAG------APVRITLVDRRNHHLFQPLLYQVATAALSP 62
Query: 137 WEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA +L+ V+ + P+ + L G ++YD+L
Sbjct: 63 ADIAEPIRHVLSRQRNVRTLLAEAAAVEPAQR-------------RLRLADGYALDYDFL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSLIRVAVV---- 250
V++ GA A FA TLEDA + R+ L+ ER D R A++
Sbjct: 110 VVAAGATHSYFGHDEWARFAPGLKTLEDALEIRRRVLTAFERAEADPDRQRREALLTFVV 169
Query: 251 -GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G G +GVELA ++E I P + + +S + +++L
Sbjct: 170 VGGGPTGVELAGALAE----------------IARFTVPRD----FRTVSTERARVIL-- 207
Query: 310 FVRCIRRVGEFEASVKQPESGA-IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ RV + + + + + K + + P + + A VLW
Sbjct: 208 -IEGSERVLPALPASLSAAAQRDLERLGVQVWTGKRVTGIDPRGVQVGEERVAARTVLWA 266
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428
G P R +PL+ G+ L V GH I+ +GD + RD G +P
Sbjct: 267 AGV------AGAPLARTLGVPLDPAGRVPVSPDLTVPGHEEIYVVGDLALARDKHGSAIP 320
Query: 429 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A A QQ AG NL A + RP PF + + G M +GR A
Sbjct: 321 GVAPAAIQQGRHAGRNLLATLRGRPRAPFVYFDKGVMATVGRGRA 365
>gi|349699831|ref|ZP_08901460.1| NADH dehydrogenase [Gluconacetobacter europaeus LMG 18494]
Length = 428
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 172/400 (43%), Gaps = 47/400 (11%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RI I+GGG GL A RL + V + + ++ LVD+S V+KPML+ +G
Sbjct: 3 QKFRIVIVGGGVAGLALATRLGNSVGRSGRA-EITLVDKSFAHVWKPMLHCFAAGTAANE 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + +F+ + L P+ G +++++ ++YD +VL
Sbjct: 62 NDRISFMSQASRHHFEFWPGEITALDRQAKTISLAPIKDPQTGELVVDA-RTLDYDAVVL 120
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
S+G+ PG AE L DA + + R F + +A+VG G +G
Sbjct: 121 SIGSRANDFGTPGVAEHCMFIDNLVDANGFNDRFRMELLRAFANHQELDIAIVGGGATGT 180
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
+LAA + + L+ + + G + L++ +L F +
Sbjct: 181 QLAAELHKALD-------------LASLYSFGQKPPKLRITLLEAGPRILPAFPESVS-- 225
Query: 318 GEFEASVKQPES-------GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370
+A+VKQ E+ GA+ + AD+N +IL+ + A L +W G
Sbjct: 226 ---DAAVKQLEAIGVDVRAGAMVS-GADENG--FILK--------DGSRVPATLRVWAAG 271
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
K P V + L L+ GQ E TL V IFA+GD + + + +P+ T
Sbjct: 272 VKA--PDV---TKQFGGLKLSRSGQLEVRPTLQVMEDDNIFAMGDCAFIAE---KPVAPT 323
Query: 431 AQVAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILG 469
AQ A QQA L A ++ +PL F F N G ++ LG
Sbjct: 324 AQAARQQAHHLAKALPAWMMSGQPLPAFTFHNKGAVVALG 363
>gi|418608257|ref|ZP_13171462.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU057]
gi|418609304|ref|ZP_13172461.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU065]
gi|374402134|gb|EHQ73176.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU057]
gi|374408084|gb|EHQ78923.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU065]
Length = 428
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 20 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 75
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL K++V + + N T G
Sbjct: 76 LHEASAGTIN-------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG---- 124
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 125 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 179
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 180 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 231
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 232 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 275
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++GH IF +GD
Sbjct: 276 EKQQLEAGTSVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGD 328
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 329 CSAFIPADEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 387
>gi|389874693|ref|YP_006374049.1| NADH dehydrogenase protein [Tistrella mobilis KA081020-065]
gi|388531873|gb|AFK57067.1| NADH dehydrogenase protein [Tistrella mobilis KA081020-065]
Length = 472
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 194/479 (40%), Gaps = 73/479 (15%)
Query: 60 VVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119
V T+ D + + ++PR+ I G GFGGL A L D +V++VD+
Sbjct: 9 VTTASDRVPAPGEVRANGRRPRVVIAGAGFGGLQAAKAL------DGAPVEVIVVDRQNH 62
Query: 120 FVFKPMLYELLSGEVDAWEIAPRFADLL---ANTGVQFFKDRVKLLCPSDHLGVNGPMAC 176
+F+P+LY++ + + +IA +L AN V L+ D GV+
Sbjct: 63 HLFQPLLYQVATATLSPADIAWPIRAILRRQANATV--------LMAEVD--GVDTARRE 112
Query: 177 THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----- 231
G + YD L+L+ GA A A +EDA + R++
Sbjct: 113 LRAGAAR------IPYDQLILATGATHSYFGHDDWAGAAPGLKRIEDATTIRRRILLAFE 166
Query: 232 -SELERRNFGKDSLIRVAVVGCGYSGVELAATVSE----------RLEEKGIVQAINVET 280
+E+ R + + L+ VVG G +GVE+A + E RL + + + VE
Sbjct: 167 RAEMARSDDERRRLLTFVVVGGGPTGVEMAGAIVEIARKVLPPDFRLVDPRAARIVLVEA 226
Query: 281 --TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338
I P + A + L + V++ G V G SV E G P
Sbjct: 227 GPRILPAFPEDLSDYARRSLDSMGVEVATGVRVTACDMDG---VSVALAE-GVTPA---- 278
Query: 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 398
A +E A ++W G V P R + P + G+ +
Sbjct: 279 ------------AGSAIEGGRIPASTIIWGAGV------VASPAGRWIEAPRDRAGRIQV 320
Query: 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL-PF 457
L V GHP IFA+GD++A+ GRP+P A A Q D+ + A + + PF
Sbjct: 321 GPDLSVPGHPEIFAIGDTAAVTGPEGRPVPGIAPAAKQMGDYVARVIRARVTGTAVPGPF 380
Query: 458 RFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+++ G++ +GR A V G+ L G G + +A++ L +R+ V WL
Sbjct: 381 AYRHEGDLATVGRRSAVVKRG---GLKLTGFTGWAFWGIAHVYFLVGLRYRIAVAFKWL 436
>gi|294678107|ref|YP_003578722.1| NADH dehydrogenase, cyclic nucleotide-regulated [Rhodobacter
capsulatus SB 1003]
gi|294476927|gb|ADE86315.1| NADH dehydrogenase, cyclic nucleotide-regulated [Rhodobacter
capsulatus SB 1003]
Length = 549
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 191/448 (42%), Gaps = 60/448 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV-DAWEI 139
RI +LGGGFGG+YTA +L + +K ++ L++ FVF+P+L E+ +G + A +
Sbjct: 4 RIVVLGGGFGGMYTA---RALARRLGRKAEIELINAENYFVFQPLLPEVGAGSIMPAHAV 60
Query: 140 AP-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+P RF LL GVQ K V D + M G + V YD LV++
Sbjct: 61 SPLRF--LL--KGVQVRKAVV------DSVDFERKMVIVFQG--IQRRPTEVPYDHLVIA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNF-----GKDSLIRVAVVGC 252
LG +PG E A TLEDA R+ + + +LE K + VVG
Sbjct: 109 LGQGADFSRMPGLEEHALKMKTLEDARRLREHVIEQLEHAQVTALPDTKRGALTFTVVGG 168
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G+SGVE + E L+ +++ + I P+ ++VL +L
Sbjct: 169 GFSGVETVGEMKELLD-----RSLPFYSNIDPS--------EVRVLLVEYAPRILN---E 212
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ + ++ A+ G + S + + + ++ + ++ T+G+
Sbjct: 213 MPKELADY-ATAHLERHGIELKLGTGVRSATH-----RQLVTSDGEVIDTRTIVATIGNA 266
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS--ALRDSSGRP---L 427
PL P LPL +G+ D +L VKG ++ALGD + L+D +
Sbjct: 267 PL------PVILRMGLPLE-KGRVAVDRSLRVKGRTDVWALGDCALIPLKDDAAERNDFA 319
Query: 428 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
P TAQ A ++A N+ A + R F + + G + LG + G + G
Sbjct: 320 PPTAQFAVREAKRVAANITAVLKGRAPGVFAYSSRGALASLGAKRGVAD---IFGRNITG 376
Query: 488 PIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+ YL LP R++V ++W
Sbjct: 377 FPAWFIWRSYYLALLPGIGTRIRVMINW 404
>gi|290956256|ref|YP_003487438.1| transmembrane NADH dehydrogenase [Streptomyces scabiei 87.22]
gi|260645782|emb|CBG68873.1| putative transmembrane NADH dehydrogenase [Streptomyces scabiei
87.22]
Length = 458
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 194/460 (42%), Gaps = 78/460 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++ +
Sbjct: 5 RILIVGAGFAGYRTARTLARLT---RNKADITLLNPTDYFLYLPLLPQVAAGVLEPRRVT 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L + + + + + + P GGT L YD LVL+ G
Sbjct: 62 VSLTGTLRHVRL-VLGEAGDIDLDARTVRYTDP----EGGTGTLT------YDRLVLAAG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVVGCGY 254
+ KL +PG AE A F L +A + D ++E +D + VVG GY
Sbjct: 111 SVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELAAGSEDPESCRARCTFVVVGAGY 170
Query: 255 SGVELAA-------TVSERLEEKGIVQA----INVETTICPTGTPGNREAALKVLSARKV 303
+G E+AA ++ + +G V+ +++ + P A +VL R V
Sbjct: 171 TGTEVAAQGQMFTDALARQQPLRGGVRPRWVLVDIAKRVLPEMDEKLSRTADEVLRQRGV 230
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+ E SVK+ D +L + + +
Sbjct: 231 DV-------------RTETSVKE------------ATEDGVLLS--------DGEFVDTR 257
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-- 421
++W VG +P +P L LP+ RG+ + TL V G P +FA GD++A+ D
Sbjct: 258 TLVWCVGVRP-----DPLAESL-GLPME-RGRLLVEPTLQVPGRPEVFACGDAAAVPDLT 310
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
G+ P TAQ A++Q A N+ A++ P+R +LG ++ LG AA +P
Sbjct: 311 KPGQYTPMTAQHAWRQGRVAALNVAASLGRGEPRPYRHSDLGFVVDLGGVKAAANPL--- 367
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
GV L G + + +L +P + R++V WL + +
Sbjct: 368 GVPLSGVAAGAVTRGYHLAAMPGN--RVRVAADWLLDAVL 405
>gi|221210591|ref|ZP_03583571.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
gi|221169547|gb|EEE02014.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
Length = 452
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 171/408 (41%), Gaps = 43/408 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-GVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + + ++V
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
+G G +GVELAA + A+ TT G R+ +++L+ G
Sbjct: 192 IGAGATGVELAAALR---------HAVQQLTTYRFKALDGARDV--------RIRLIEG- 233
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWT 368
R + +A + + + + +D + E+ A+ + +D+ +W
Sbjct: 234 ---APRILPALDARLSDKMHAQLRALNVEVLTDTRVAEVGADAVTIASGERLASDITIWA 290
Query: 369 VGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGR 425
G V P L + LN Q +TL P ++A GD +A D +
Sbjct: 291 AG-------VAGPAILRELDGIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSDGASG 343
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP AQVA QQA + I +P+ F F++ G ++ LG A
Sbjct: 344 CLPPRAQVAHQQAVYLSQAFARRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|162146140|ref|YP_001600599.1| NADH dehydrogenase [Gluconacetobacter diazotrophicus PAl 5]
gi|209544509|ref|YP_002276738.1| NADH dehydrogenase [Gluconacetobacter diazotrophicus PAl 5]
gi|161784715|emb|CAP54255.1| putative NADH dehydrogenase [Gluconacetobacter diazotrophicus PAl
5]
gi|209532186|gb|ACI52123.1| NADH dehydrogenase [Gluconacetobacter diazotrophicus PAl 5]
Length = 427
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 165/396 (41%), Gaps = 42/396 (10%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ I I+GGG GL A RL + + ++ L+D+S V+KPML+ +G
Sbjct: 4 RSEILIVGGGVAGLALATRLGGTLGKQGSA-RITLIDKSFSHVWKPMLHCFAAGTAQNEN 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F +F+ V L + V GP+ + G TVL V YD LVLS
Sbjct: 63 DRISFMSQAGAHHFEFWPGEVISLDRAKREVVLGPLRASDGSTVL--ESRTVTYDALVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258
+G+ PG AE L +A + K R + ++ + +A+VG G +G +
Sbjct: 121 IGSCANDFRTPGVAEHCLFIDNLVEANGFNEKFRMELLRAYATNAELDIAIVGGGATGTQ 180
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNR----EAALKVLSARKVQLVLGYFVRCI 314
LAA + + L+ G+ PT P R EA +VL A + V + +
Sbjct: 181 LAAELHKALDIVGL-------HAFGPT-PPRLRITLLEAGPRVLPAFP-EAVSAAAQQEL 231
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
R+G SV+ A +D+ L+ + A L +W G K
Sbjct: 232 ERIG---VSVRTS--------AMVSGADETGFSLK------DGTHIPATLRVWAAGVKA- 273
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434
P V L L+ GQ L RIFALGD S + D PLP TAQVA
Sbjct: 274 -PDV---TKSYGGLSLSRSGQILVKPNLLSVDDDRIFALGDCSFIVDD---PLPPTAQVA 326
Query: 435 FQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILG 469
QQA +L A I D +P F+N G ++ LG
Sbjct: 327 RQQAHHLARHLSAWIRDGQDVPACVFRNKGAIVALG 362
>gi|149280183|ref|ZP_01886306.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Pedobacter sp. BAL39]
gi|149229020|gb|EDM34416.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Pedobacter sp. BAL39]
Length = 435
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 169/421 (40%), Gaps = 89/421 (21%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGGF GL A +L + QV LVD++ F P+LY++ + ++ I+
Sbjct: 7 RIVIVGGGFAGLNLAKKLA-----NHDIYQVTLVDKNNYHFFPPLLYQVSTAFIEPSNIS 61
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
F + + FF ++ + + T GT+ YD+LVL++
Sbjct: 62 YPFRRMFQEKRNLSFFMGELQQINHQRNY------IETENGTL--------HYDYLVLAM 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER----RNFG-KDSLIRVAVVGCG 253
G E + E + P T++DA ++ + L +LE +N K+ L V + G G
Sbjct: 108 GTETNYFGMDNVKEKSMPMKTIDDALKLRNHVLLQLEEAARSQNIKEKEKLGNVVIAGGG 167
Query: 254 YSGVELAATVSER----------LEEKGI--VQAINVETTICPTGTPGNREAALKVLSAR 301
+GVE+A ++E KG+ + ++ T+ + +++ A +VLS
Sbjct: 168 PTGVEIAGMLAEMGGNIVSKDYPTARKGVGKIYLVDALGTLLAPMSKKSQDEAYQVLSKL 227
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
VQ++L V+ D DK I + Q
Sbjct: 228 GVQIMLNTTVK-------------------------DYTGDKVIFG--------DGQSIT 254
Query: 362 ADLVLWTVG----SKPLLPHVEPPNNRLHDLPLNARGQ-AETDETLCVKGHPRIFALGDS 416
A ++W G P LP + ARG+ DE V G +FALGD
Sbjct: 255 AATLIWASGVIGRPAPGLPE-----------EVIARGRRIMVDEYNKVNGLENVFALGDI 303
Query: 417 SALRDSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 474
S + P P AQVA QQ+ N + L PF++ + G M I+ + A
Sbjct: 304 SLQQSDEQFPKGHPQLAQVALQQSALLAHNFLNMAEGKSLRPFKYNDKGSMAIIAKFKAV 363
Query: 475 V 475
V
Sbjct: 364 V 364
>gi|251771598|gb|EES52174.1| NADH dehydrogenase [Leptospirillum ferrodiazotrophum]
Length = 452
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/457 (24%), Positives = 189/457 (41%), Gaps = 81/457 (17%)
Query: 76 DKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
D KP R+ ILG GFGGLYT + L ++ + + +VD+ F+F PML+ + +G +
Sbjct: 7 DGSKPYRVLILGAGFGGLYTGVLLSQILGKRAPNVWITVVDRQNYFLFTPMLHAVATGAL 66
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ +A + T V V+ + + + A + YD
Sbjct: 67 EPRYVAHSIRKIFRKTRVHAHVGEVERIDLENRQVITPHRALS--------------YDE 112
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKD-----SLIRVA 248
LV+SLG+E AF +LEDA R++ + + E+ + +D +L+
Sbjct: 113 LVISLGSETNFFGNRDLERRAFTLKSLEDAVRINNHIIRQFEKAYWEEDPERKRALLTFV 172
Query: 249 VVGCGYSGVELAATVSE-----------RLEEKGIVQAINVETT--ICPTGTPGNREAAL 295
VVG G +GVELA + E R ++ ++ I +E T I P+ A+
Sbjct: 173 VVGGGPTGVELAGEIYEYAVRELLRDFGRRIDRSDIRVILLEATGRILPSLPDRLSTEAI 232
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+ L+ +G VR R+ ++ + + SG
Sbjct: 233 RRLTE------IGIEVRLETRLESWDGELVRFSSG------------------------- 261
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFAL 413
+ A ++W G K N + +LPL+ +G+ TL K ++ L
Sbjct: 262 --ESLAAGTLVWAAGVK--------TNPLVRELPLDKDPQGRIVVRATLEAKSMDHVWVL 311
Query: 414 GDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 472
GD++ D +P P TAQ A +QA N+ A I RP F ++G + +G N
Sbjct: 312 GDNAHSVDPFEQKPYPPTAQTAVRQARVVAHNIAARILKRPEKTFAHHHVGGFVSIGDNY 371
Query: 473 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
A +S + TL G +G Y+ +LP +RL
Sbjct: 372 ALLS---AKQFTLTGILGWFLWNFVYIHKLPIIRYRL 405
>gi|374990118|ref|YP_004965613.1| oxidoreductase [Streptomyces bingchenggensis BCW-1]
gi|297160770|gb|ADI10482.1| oxidoreductase [Streptomyces bingchenggensis BCW-1]
Length = 399
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 166/399 (41%), Gaps = 70/399 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI +LG G+ G Y A L + D ++ +++ FV + L++L +G+ E
Sbjct: 2 KHRIVVLGAGYAGSYVAGTLARRLSPADT--EITVINAEPDFVQRLRLHQLAAGQ----E 55
Query: 139 I-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I AP+ AD+ A TG++ RV + P + +A GG E G YD LV
Sbjct: 56 IEAPQLADVFAGTGIELRLARVTAVDPQRQVVA---VAGADGGG---EFG----YDTLVH 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
+LG+ VPG AE AF + A R+ +L L RR+ G L VVG G +G+
Sbjct: 106 ALGSHGDDCGVPGVAEHAFDVAARPSALRLRERLDSLGRRDEGGSVL----VVGDGLTGI 161
Query: 258 ELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
E A ++E + T+ G G R +A AR G+ + R+
Sbjct: 162 ETATEIAESRP--------GLSVTLVARGELGARLSA----GAR------GHLRQACDRL 203
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377
G + E + + A + + + + +D+ +WT G
Sbjct: 204 G-----ITVLEHTEVEAVEAAR------------VLCADGTVLASDVTVWTAG------F 240
Query: 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437
P L + G+ D + +P ++A+GDS+ +GRPLP ++
Sbjct: 241 AVDPIAAAGGLEVTEDGRIVVDRIMRSVSYPNVYAVGDSAYAIGDNGRPLP----MSCAS 296
Query: 438 ADFAGWNLWAAI----NDRPLLPFRFQNLGEMMILGRND 472
A + G AAI R + + + LG + LGR D
Sbjct: 297 AGYTGMQATAAIVGRLTGRKIPNTKLEYLGNHISLGRRD 335
>gi|359784857|ref|ZP_09288021.1| NADH dehydrogenase [Halomonas sp. GFAJ-1]
gi|359297773|gb|EHK61997.1| NADH dehydrogenase [Halomonas sp. GFAJ-1]
Length = 432
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 192/454 (42%), Gaps = 57/454 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + K+ +++L+D++ V+KP+L+EL +G +++
Sbjct: 4 PRIVIVGGGAGGLALATRLGQTLGKK-KRAEIVLLDRNATHVWKPLLHELATGALNS--- 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYD 193
+ D ++ ++ + L G++ H +L E+G V YD
Sbjct: 60 SMDEVDYRGHSSAHHYRYQRGSLD-----GLDREKKVIHLSPILDENGEEVLPARELTYD 114
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----NFGKDSLIRVAV 249
+LVL+LG+ G AE + + A + R + + + + + +
Sbjct: 115 YLVLALGSVSNDFGTEGVAEHCHFMDSPQQAKAFQHHMINTFLRYTDPSLRQHTQLTIGI 174
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA--RKVQLVL 307
VG G +GVEL+A E L+ ++ A V + E A ++L A ++ L +
Sbjct: 175 VGGGATGVELSA---ELLDASRLLNAYGVTALDHQNISVHLIEGAPRLLPALSERIGLTV 231
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
+ + ++KQ + + D + E DL +W
Sbjct: 232 QQELESMGVHVHVNTTIKQAQQYQLITDDGD--------------------VIETDLNVW 271
Query: 368 TVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 425
G K P L + L N + Q + +TL P IFA+GD ++
Sbjct: 272 AAGIKAPPFLAEI--------GLTTNKKNQIQVAQTLQSVDDPHIFAMGDCASCPQGEDS 323
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA---VSPSFVEG 482
+P AQ A QQA NL A+ +PL PF +++ G ++ L R DA + S G
Sbjct: 324 TVPPRAQAAHQQAKLLAKNLVNALESKPLKPFIYRDHGSLVSLARYDAVGNLMRSSASRG 383
Query: 483 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ L+G + A Y + + K G++WL
Sbjct: 384 LFLEGWLARQAYASLYRMHQLSIHGAPKTGLAWL 417
>gi|282875564|ref|ZP_06284435.1| pyridine nucleotide-disulphide oxidoreductase [Staphylococcus
epidermidis SK135]
gi|418617256|ref|ZP_13180160.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU120]
gi|281295591|gb|EFA88114.1| pyridine nucleotide-disulphide oxidoreductase [Staphylococcus
epidermidis SK135]
gi|374819103|gb|EHR83234.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU120]
Length = 428
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 20 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 75
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL K++V + + N T G
Sbjct: 76 LHEASAGTIN-------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG---- 124
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 125 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 179
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 180 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 231
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 232 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 275
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++GH IF +GD
Sbjct: 276 EKQQLEAGTSVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGD 328
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 329 CSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 387
>gi|398780617|ref|ZP_10544946.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces auratus AGR0001]
gi|396998082|gb|EJJ09016.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces auratus AGR0001]
Length = 434
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 118/473 (24%), Positives = 198/473 (41%), Gaps = 80/473 (16%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
I+G GF G A +L Q +++L++ ++ F++ P+L E+ +G ++ I+
Sbjct: 2 IVGAGFAGYECA---RTLSRQAKGAAEIVLLNPNDYFLYVPLLPEVATGILEPRRISVSL 58
Query: 144 ADLLANT--------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
L V F +V P + G + YD L
Sbjct: 59 TGTLPGVRLVLGEARDVDFEARQVHYTDPEERKGS-------------------LPYDRL 99
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVA-----V 249
VL++G+ KL VPG AE A F + +A + D ++E +D+ R A V
Sbjct: 100 VLTVGSVNKLLPVPGVAEHAHGFRGMPEALFLRDHITRQIELAGAAEDAAERSARTTFVV 159
Query: 250 VGCGYSGVELAATVSERLEEKGI--VQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
VG GY+G E+ A +G+ A+ + T G P R L +
Sbjct: 160 VGAGYTGTEVTA--------QGVRFTDALARQNTGLRDGGPRPRWLLLDIAD-------- 203
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-LQPAIKGLESQIFEADLVL 366
R + E + + + + D + + E Q + + + + +L
Sbjct: 204 -------RLLPELDERLSRTAERVLRAQGVDVRTGTSVKEATQDGVLLDDGEFVASRSLL 256
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS--G 424
W VG +P +P + L LP + +G+ DE L V G P +FA GD++A+ D + G
Sbjct: 257 WCVGVRP-----DPLVDSL-GLPTD-KGRLCVDEFLNVPGRPGVFACGDAAAVPDLTRPG 309
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
P TAQ A +Q A N+ A+ +R +LG M+ LG AA +P V
Sbjct: 310 EVTPMTAQHAQRQGKVAARNVAASCGRGAPRAYRHHDLGFMVDLGGLQAAANPLHVP--- 366
Query: 485 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 537
L GP+ + +L+ +P ++R++V WL +D+V Q ++SS
Sbjct: 367 LSGPLAGLVTRGYHLMAMP--DNRVRVAADWL----LDAVLPRQGVQLGLVSS 413
>gi|251810314|ref|ZP_04824787.1| NADH dehydrogenase [Staphylococcus epidermidis BCM-HMP0060]
gi|293368317|ref|ZP_06614945.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417656318|ref|ZP_12306005.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU028]
gi|251806196|gb|EES58853.1| NADH dehydrogenase [Staphylococcus epidermidis BCM-HMP0060]
gi|291317564|gb|EFE57982.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329736769|gb|EGG73034.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU028]
Length = 424
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 16 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 71
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL K++V + + N T G
Sbjct: 72 LHEASAGTIN-------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG---- 120
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 121 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 175
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 176 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 227
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 228 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 271
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++GH IF +GD
Sbjct: 272 EKQQLEAGTSVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGD 324
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 325 CSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 383
>gi|300703486|ref|YP_003745088.1| NADH dehydrogenase [Ralstonia solanacearum CFBP2957]
gi|299071149|emb|CBJ42462.1| NADH dehydrogenase [Ralstonia solanacearum CFBP2957]
Length = 441
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 184/427 (43%), Gaps = 46/427 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKL--SELERRNFGKD--SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281
R RKL + + +N D + + +A+VG G +GVEL+A + N
Sbjct: 154 RFRRKLIAACMRAQNGVGDARAQVDIAIVGAGATGVELSAELR------------NTAHV 201
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341
+ G L L ++ L+ G R + V + + + D +
Sbjct: 202 LAAYGLH-----KLDPLRDIRIHLIEG----SPRILAALSERVSAETTKLLHKLNVDVIT 252
Query: 342 DKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
+ ++E+ A+K + ADL +W G + P LPL+ GQ
Sbjct: 253 GERVVEVTDSAVKTGSGKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSR 306
Query: 401 TLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
TL V+G I+A GD +S + +P AQ A QQA + + + +P+ PF F
Sbjct: 307 TLQVEGDDSIYAFGDCASCPWPEASTSVPPRAQAAHQQATYLYKAMRRRLQGKPVEPFGF 366
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLT 517
++LG ++ LG A G + G IG + + RL T +R+ V +
Sbjct: 367 KDLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFV 419
Query: 518 KSAIDSV 524
+ A+D+V
Sbjct: 420 RMALDTV 426
>gi|388545747|ref|ZP_10149027.1| hypothetical protein PMM47T1_15181 [Pseudomonas sp. M47T1]
gi|388276158|gb|EIK95740.1| hypothetical protein PMM47T1_15181 [Pseudomonas sp. M47T1]
Length = 400
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 153/385 (39%), Gaps = 56/385 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K I ILG GFGGL+TAL L Q + +V ++ +P YE DA
Sbjct: 2 KQHILILGAGFGGLWTALGATRLFNQHGHRDTRVSVLAPQAELRIRPRFYE-----PDAH 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A DLLA V F K + ++ C T + + YD LVL
Sbjct: 57 RLAAPIGDLLAAVDVDFIKGAAQ--------AIDVAAKCVRY-TDAFGASQVCRYDKLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIRVAVVGCGYS 255
+ G+ L PG AE AF +E A R++ L L R+ + G+++++ V G G++
Sbjct: 108 ATGSGLALPGAPGVAEHAFDVDQIEQAVRLENHLKALARQPESRGRNTVV---VAGGGFT 164
Query: 256 GVELAATVSERLEEKGIVQAINVETTICPTGTP-GNREAALKVLSARKVQLVLGYFVRCI 314
G+E A + RL QA N++ I G G A S + LG R
Sbjct: 165 GIETATQMPGRLRAILGEQA-NIDVIIVDRGAQVGASMGAEIAESIAQASDALGVSWR-- 221
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374
++SV +A D LE + Q EA V+WT G +
Sbjct: 222 -----LQSSV----------VAVDAQG--VTLE--------DGQCIEAHTVIWTTGVRAH 256
Query: 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQV 433
+ P R + G+ D L V G I+A GD + A D G T Q
Sbjct: 257 GLTAQVPGER------DGLGRLHVDVNLKVIGQHDIYATGDVAHAATDELGNHALMTCQH 310
Query: 434 AFQQADFAGWNLWAAINDRPLLPFR 458
A F+G N+ A + LP+R
Sbjct: 311 AIMLGRFSGHNVAAQVLGVEPLPYR 335
>gi|421479855|ref|ZP_15927518.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans CF2]
gi|400222153|gb|EJO52555.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans CF2]
Length = 452
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 171/408 (41%), Gaps = 43/408 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDVDGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + + ++V
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
+G G +GVELAA + A+ TT G R+ +++L+ G
Sbjct: 192 IGAGATGVELAAALR---------HAVQQLTTYRFKALDGARDV--------RIRLIEG- 233
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWT 368
R + +A + + + D +D + E+ A+ + +D+ +W
Sbjct: 234 ---APRILPALDARLSDKMHAQLRALNVDVLTDTRVAEVGADAVTIASGERLASDITIWA 290
Query: 369 VGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGR 425
G V P L + LN Q +TL P + A GD +A + +
Sbjct: 291 AG-------VAGPAILRELDGIALNRSNQVIVTDTLQTPDDPHVHAFGDCAACPSNGASG 343
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP AQVA QQA + I +P+ F F++ G ++ LG A
Sbjct: 344 CLPPRAQVAHQQAVYLSQAFARRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|357639247|ref|ZP_09137120.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
urinalis 2285-97]
gi|418417712|ref|ZP_12990905.1| hypothetical protein HMPREF9318_01653 [Streptococcus urinalis
FB127-CNA-2]
gi|357587701|gb|EHJ57109.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
urinalis 2285-97]
gi|410870196|gb|EKS18154.1| hypothetical protein HMPREF9318_01653 [Streptococcus urinalis
FB127-CNA-2]
Length = 402
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 170/406 (41%), Gaps = 70/406 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ +LG G+ GL T +L+ + + LVD+++ L+E+ SG +I
Sbjct: 3 EVLVLGAGYAGLKTVRQLQ----KQSGDFHITLVDRNDYHYEATELHEVASGSQPKDKIT 58
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD++ V F +D V + P TV +++ ++ YD++V+SLG
Sbjct: 59 FPIADVINKDKVTFLQDEVVKVDPKQQ-------------TVTVKNHGVLNYDYVVVSLG 105
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVD-------RKLSELERRNFGKDSLIRVAVVGCG 253
+ +PGA E A ++ A + +K E + +N+ +R+ + G G
Sbjct: 106 FCSETFGIPGAKENALQMVDIDTAENIHNHIIDMMKKYKETKDKNY-----LRLLICGAG 160
Query: 254 YSGVELAATV---SERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
++G+ELA ER E V+A ++E IC EAA ++L QL Y
Sbjct: 161 FTGIELAGAFLDERERYAEIAGVKAEDIE-VICV-------EAATRILPMFDDQLA-NYG 211
Query: 311 VRCIRRVG---EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
V I+++G + +K+ + G + + ++++ Q A ++W
Sbjct: 212 VDLIKKLGVNLMLGSMIKEIKPGEVVYATSPEDTN--------------YQSISAATIVW 257
Query: 368 TVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSG 424
T G P++ N D RG+ L + ++ +GD SA D +
Sbjct: 258 TTGVSGSPVM------NESGFD---QRRGRVVVKSDLRDPNYENVYIIGDVSAFMDPETD 308
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
RP P TAQ+A + G NL + F ++ G + +G
Sbjct: 309 RPFPTTAQIATRMGAHVGKNLAHQLKGEATEEFSYKAAGTVASVGN 354
>gi|78063830|ref|YP_373738.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. 383]
gi|77971715|gb|ABB13094.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. 383]
Length = 452
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 177/412 (42%), Gaps = 55/412 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL+ A RL V + + +V+LVD+ +KP+L+E SG D
Sbjct: 17 PRIVIVGGGAGGLHLATRLGDTVGRRGQA-EVVLVDRYPTHFWKPLLHEAASGHRDPASH 75
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+A G +F + ++ + + + G +L + L +YD LVL++
Sbjct: 76 TIEYAAQAKRHGFRFVQGALQQVDRAARTATIAAVQDADGTEILPQREL--DYDDLVLAV 133
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFGKDSLIRVAVVG 251
G+ VPGAA A P L+ A RK E++ + + I + V+G
Sbjct: 134 GSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPARRAAPICINVIG 193
Query: 252 CGYSGVELAATVSERLEE------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
G +GVELAA + + +++ K +V A +V + E ++L A +L
Sbjct: 194 AGATGVELAAALRDSIQQLTTYRFKALVSARDVHIRLI--------EGGPRILPALDERL 245
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADL 364
G+ A ++ + D +D + E+ A+ + +D+
Sbjct: 246 S-----------GKMHAQLRA--------LNVDVLTDTRVAEVGADAVTTSTGERLASDI 286
Query: 365 VLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
+W G V P ++ D+ LN Q +TL P ++A GD +A +
Sbjct: 287 TIWAAG-------VAGPAFLRQIGDIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPTA 339
Query: 423 SGRP-LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP AQVA+QQA + + +P+ F F++ G ++ LG A
Sbjct: 340 GANGFLPPRAQVAYQQAVYLVNAFARRVAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|421891277|ref|ZP_16322088.1| NADH dehydrogenase [Ralstonia solanacearum K60-1]
gi|378963386|emb|CCF98836.1| NADH dehydrogenase [Ralstonia solanacearum K60-1]
Length = 441
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 184/427 (43%), Gaps = 46/427 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKL--SELERRNFGKD--SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281
R RKL + + +N D + + +A+VG G +GVEL+A + N
Sbjct: 154 RFRRKLIAACMRAQNGMGDARAQVDIAIVGAGATGVELSAELR------------NTAHV 201
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341
+ G L L ++ L+ G R + V + + + D +
Sbjct: 202 LAAYGLH-----KLDPLRDIRIHLIEG----SPRILAALSERVSAETTKLLHKLNVDVIT 252
Query: 342 DKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
+ ++E+ A+K + ADL +W G + P LPL+ GQ
Sbjct: 253 GERVVEVTDSAVKTGSGKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSR 306
Query: 401 TLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
TL V+G I+A GD +S + +P AQ A QQA + + + +P+ PF F
Sbjct: 307 TLQVEGDDAIYAFGDCASCPWPEASTSVPPRAQAAHQQATYLYKAMRRRLQGKPVEPFGF 366
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLT 517
++LG ++ LG A G + G IG + + RL T +R+ V +
Sbjct: 367 KDLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFV 419
Query: 518 KSAIDSV 524
+ A+D+V
Sbjct: 420 RMALDTV 426
>gi|221197481|ref|ZP_03570528.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
gi|221204154|ref|ZP_03577172.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221176320|gb|EEE08749.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221184035|gb|EEE16435.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
Length = 452
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 172/408 (42%), Gaps = 43/408 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + + ++V
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
+G G +GVELAA + A+ TT R AL +++L+ G
Sbjct: 192 IGAGATGVELAA---------ALCHAVQQLTTY--------RFKALDAARDVRIRLIEG- 233
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWT 368
R + +A + + + + +D + E+ A+ + +D+ +W
Sbjct: 234 ---APRILPALDARLSDKMHAQLRALNVEVLTDTRVAEVGADAVTIASGERLASDITIWA 290
Query: 369 VGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGR 425
G V P L + LN Q +TL P ++A GD +A + +
Sbjct: 291 AG-------VAGPAILRELDGIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSNGASG 343
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP AQVA QQA + I +P+ F F++ G ++ LG A
Sbjct: 344 CLPPRAQVAHQQAVYLSQAFARRIAGKPVARFTFRDAGTVVSLGHAGA 391
>gi|380300780|ref|ZP_09850473.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium
squillarum M-6-3]
Length = 460
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 173/439 (39%), Gaps = 99/439 (22%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGGF G + L D + +V L+D++ F+P+LY++ + ++ ++
Sbjct: 21 PHVVIIGGGFAGAQAVMGLR------DTRVRVTLIDRNVYKTFQPLLYQVATAGLNPGDV 74
Query: 140 APRFADL-LANTGVQFFKDRVKLLCPSDHLGV--NGPMACTHGGTVLLESGLIVEYDWLV 196
L L +++ + V + P + + G H + YD+LV
Sbjct: 75 TMFLRGLSLKVPNMRYRQGEVVGVDPEEKVVTLDEGQRGAHH-----------LSYDYLV 123
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--RNFGKDSLIRVAVVGCG 253
L+ GA PGA E A P T A + +R SELER R+ D L V++VG G
Sbjct: 124 LANGATTNFFGTPGAEEHAMPMYTRSQALAIRERVFSELERSSRDSTGDKL-HVSIVGGG 182
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAAL------------------ 295
+GVE+A +++ E Q +++ + P PG + L
Sbjct: 183 PTGVEIAGALADFRE-----QELDI---LYPEMDPGTLQITLIQRGKDLIKEFREEYREY 234
Query: 296 --KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353
+ L R V+L LG+ V + D L+
Sbjct: 235 AAEELQDRGVELCLGHGVDAV-------------------------GYDHVELD------ 263
Query: 354 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRIF 411
+I E+D+ +W G + D LP + RG+ DETL V+G P ++
Sbjct: 264 --GGRILESDITIWAAGVG--------IAETVADWGLPQDDRGRLVVDETLQVEGFPGVY 313
Query: 412 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
A GD + + LP AQ A Q + A + PF + + G M +GR+
Sbjct: 314 AAGDIAGGEHA----LPQLAQPAIQTGQAVAKMIDADVTGATKKPFSYLDFGTMATIGRH 369
Query: 472 DAAVSPSFVEGVTLDGPIG 490
A V G+ G G
Sbjct: 370 AAITQLPEVPGLGSHGLTG 388
>gi|115359836|ref|YP_776974.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
gi|115285124|gb|ABI90640.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
Length = 452
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 174/415 (41%), Gaps = 57/415 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L + L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTATIAAVQDADGTEILPQRAL--GYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + I + V
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHVAEQQPARPAAPICINV 191
Query: 250 VGCGYSGVELAATVSERLEE------KGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
+G G +GVELAA + +++ K +V A +V + E ++L A
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLI--------EGGPRILPA--- 240
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEA 362
+A + + + D +D + E+ A+ + +
Sbjct: 241 ----------------LDARLSARMHAQLRTLNVDVLTDTRVAEVGADAVTTATGERLAS 284
Query: 363 DLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL- 419
D+ +W G V P L D+ LN Q +TL P ++A GD +A
Sbjct: 285 DITIWAAG-------VAGPAILRELGDIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACP 337
Query: 420 -RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
D+SG LP AQVA QQA + G L + +P+ F F++ G ++ LG+ A
Sbjct: 338 SADASGF-LPPRAQVAHQQAVYLGEALARRLAGKPVAGFTFRDAGTVVSLGQAGA 391
>gi|418604209|ref|ZP_13167569.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU041]
gi|374405431|gb|EHQ76365.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU041]
Length = 437
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 20 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 75
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL K++V + + N T G
Sbjct: 76 LHEASAGTIN-------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG---- 124
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 125 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 179
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 180 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 231
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 232 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 275
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++GH IF +GD
Sbjct: 276 EKQQLEAGTSVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGD 328
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 329 CSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 387
>gi|376254296|ref|YP_005142755.1| NADH dehydrogenase [Corynebacterium diphtheriae PW8]
gi|372117380|gb|AEX69850.1| NADH dehydrogenase [Corynebacterium diphtheriae PW8]
Length = 454
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 192/457 (42%), Gaps = 64/457 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ + + ++G GFGGL+ L+ D + L+D++ +F+P+LY++ +G +
Sbjct: 8 PEGGRHHVVVIGSGFGGLFAVQNLK------DADVDITLIDRTNHHLFQPLLYQVATGIL 61
Query: 135 DAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ EIAP+ +LA V K V + V L + +EYD
Sbjct: 62 SSGEIAPQTRQVLAQQNNVHVLKAEVTDIDTESKTVVAD----------LDDYSKTIEYD 111
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKD-----SLIRV 247
L+++ GA AEFA T++DA + R + ER +D L+
Sbjct: 112 SLIVAAGAGQSYFGNDHFAEFAPGMKTIDDALELRARIIGAFERAEMCEDPKERERLLTF 171
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
+VG G +GVELA ++E + ++ E T TP N K++ VL
Sbjct: 172 VIVGAGPTGVELAGQLAEMAH-----RTLSGEYTQF---TPSN----AKIILLDGAPQVL 219
Query: 308 GYFVRCIRRVG--EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES--QIFEAD 363
F + + R E E + AI D+NS Y + ++ ++S +I+ A
Sbjct: 220 PPFGKRLGRTAQRELEKIGVTVKLNAIVT-GVDENSVTYKSTVDDSLHTIDSFCKIWSAG 278
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
+ +G K + + +R+ +P+N E L V +F +GD +L
Sbjct: 279 VAASPLG-KLVAEQLGVEVDRVGRVPVN--------EDLSVGDDKNVFVIGDMMSL---- 325
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAI-----NDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
LP AQVA Q ++ + A + ++RP F + + G M + R +A V
Sbjct: 326 -NRLPGVAQVAIQGGEYVAEQIAAEVEGRSSSERP--AFEYYDKGSMATVSRFNAVVKLG 382
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
VE + G IG L YL+ L +R SW
Sbjct: 383 KVE---VTGFIGWVMWLLVYLMFLVGFRNRATAAFSW 416
>gi|417911709|ref|ZP_12555409.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU105]
gi|420187831|ref|ZP_14693847.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM039]
gi|341652220|gb|EGS76009.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU105]
gi|394255676|gb|EJE00623.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM039]
Length = 402
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 171/407 (42%), Gaps = 58/407 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL K++V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVG 251
V++LG + + G E AF + + ++ R K + D + + V G
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHIEDKFANYAASKEKDDKDLSILVGG 165
Query: 252 CGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 166 AGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV-S 216
Query: 309 YFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y V+ + G EF+ A P +A N +++E+ E Q EA +W
Sbjct: 217 YAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTFVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRP 426
T G + H+ + RG+ + L ++GH IF +GD SA + RP
Sbjct: 262 TAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEERP 314
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 315 LPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|337752039|ref|YP_004646201.1| hypothetical protein KNP414_07845 [Paenibacillus mucilaginosus
KNP414]
gi|379724950|ref|YP_005317081.1| hypothetical protein PM3016_7364 [Paenibacillus mucilaginosus 3016]
gi|386727705|ref|YP_006194031.1| hypothetical protein B2K_37165 [Paenibacillus mucilaginosus K02]
gi|336303228|gb|AEI46331.1| YjlD [Paenibacillus mucilaginosus KNP414]
gi|378573622|gb|AFC33932.1| YjlD [Paenibacillus mucilaginosus 3016]
gi|384094830|gb|AFH66266.1| hypothetical protein B2K_37165 [Paenibacillus mucilaginosus K02]
Length = 392
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 130/305 (42%), Gaps = 54/305 (17%)
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFG 240
VLL SG + YD LV++LG+E +PG E +F +++DA RV + + ++
Sbjct: 90 VLLGSGKTLSYDILVIALGSETAYFGIPGLQEHSFTLKSVQDANRVRAHVEARIDAYVQS 149
Query: 241 KDSLIRVAVVGCG-YSGVELAATVSERL----EEKGI------VQAINVETTICPTGTPG 289
KD VVG G +G+EL ++ L +KG+ + + +I P
Sbjct: 150 KDKADATFVVGGGGLTGIELVGEFADMLPGLCRKKGVDFNDISIYCVEAGPSILAGFAPE 209
Query: 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
E A L+ R VQ + G + E A+ + G+
Sbjct: 210 LVERAQTSLAKRGVQFLTGVAIT------EMTATTVHLKDGST----------------- 246
Query: 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHP 408
+ + ++WT G + N+ + + + RG+A E L HP
Sbjct: 247 ----------IDTNTLVWTGGVQG--------NSVVANCGIEVNRGRATVTEGLQSTSHP 288
Query: 409 RIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
+F GDS+ + GRP P TAQ+A+Q + G+N++A +N P+ PF G + L
Sbjct: 289 DVFLAGDSAVVFGPEGRPYPPTAQLAWQMGETIGYNIFAYLNGAPMDPFTPVFSGTLASL 348
Query: 469 GRNDA 473
GR D
Sbjct: 349 GRKDG 353
>gi|91777304|ref|YP_552512.1| putative NADH dehydrogenase [Burkholderia xenovorans LB400]
gi|91689964|gb|ABE33162.1| Putative NADH dehydrogenase [Burkholderia xenovorans LB400]
Length = 449
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 165/384 (42%), Gaps = 47/384 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 34 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
+ G + G +L E L EYD L++++G+ V GA EF+ T+ A R
Sbjct: 94 RLMLGTVLDDDGAELLPEREL--EYDTLIIAIGSTTAFFGVKGAPEFSLALDTVSQAERF 151
Query: 228 DRKLSELERRNFGK---------------DSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
++L R + + I+VA+VG G +GVEL+A E +
Sbjct: 152 RKRLIAACMRAEHQVHEPVESAPGTPSTDEPRIQVAIVGGGATGVELSA------ELRNT 205
Query: 273 VQAINVETTICPTGTPGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGA 331
Q ++ L L R V +VL R + + V +
Sbjct: 206 AQVLSA--------------YGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAEL 249
Query: 332 IPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390
+ + + + + E+ P I+ + ADL +W G K P + + L LP+
Sbjct: 250 LTKLGVKLMTSETVAEVAPGLIRTASGKTVRADLTVWAAGIKA--PAIL---SELDGLPV 304
Query: 391 NARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAI 449
N GQ TL + IFALGD +A + R +P AQ A QQA F L A +
Sbjct: 305 NRLGQLVVRRTLQTEIDDDIFALGDCAACPWPGNERNVPPRAQAAHQQASFLMKALTARL 364
Query: 450 NDRPLLPFRFQNLGEMMILGRNDA 473
+ RPL F +++ G ++ LG A
Sbjct: 365 DGRPLPEFTYRDFGSLVSLGHFSA 388
>gi|209517787|ref|ZP_03266622.1| NADH dehydrogenase [Burkholderia sp. H160]
gi|209501733|gb|EEA01754.1| NADH dehydrogenase [Burkholderia sp. H160]
Length = 451
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 167/398 (41%), Gaps = 73/398 (18%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD+ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 34 QAQVTLVDRYPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
G + G +L E L EYD LV+++G+ V GAAEF+ T+ A R
Sbjct: 94 RITLGTVLDDDGAELLPEREL--EYDTLVIAIGSTTAFFGVKGAAEFSIALDTVGQAERF 151
Query: 228 DRKL------------SELERRN-----FGKDSLIRVAVVGCGYSGVELAATVS------ 264
++L +E R + I+VA+VG G +GVEL+A +
Sbjct: 152 RKRLIAACMRAEHQAHEPVESRPGPGTWSSSEPRIQVAIVGGGATGVELSAELRNTAQVL 211
Query: 265 -----ERLEEKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317
+L+ + V + +E I P A ++L+ V+L++G
Sbjct: 212 SAYGLHKLDPRHDVGIVLIEAGPRILPALQERVSTATAELLTKLGVKLMIG--------- 262
Query: 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLP 376
+ + E+ P I+ ADL +W G K P
Sbjct: 263 -------------------------ETVAEVAPGYIRTASGHTVRADLTVWAAGIKA--P 295
Query: 377 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAF 435
V +L LP+N GQ TL + +FALGD +A + R +P AQ A
Sbjct: 296 AVLA---QLDGLPVNRLGQLVVRRTLQTEIDDNVFALGDCAACEWPGNERNVPPRAQAAH 352
Query: 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
QQA F L A ++++PL F +++ G ++ LG A
Sbjct: 353 QQASFMMKALAARLDNKPLPEFTYRDFGSLVSLGHFSA 390
>gi|418327578|ref|ZP_12938730.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis 14.1.R1.SE]
gi|365232831|gb|EHM73807.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 424
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 177/419 (42%), Gaps = 62/419 (14%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
ES + D+KK + +LG G+ GL T +L+ + D ++ L++++E
Sbjct: 16 ESLGELEMAQDRKK--VLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTW 71
Query: 126 LYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLL 184
L+E +G ++ + DLL KD+V + + N T G
Sbjct: 72 LHEASAGTIN-------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG---- 120
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG---- 240
+ ++D LV++LG + + G E AF + + ++ R + E + N+
Sbjct: 121 ----VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKE 175
Query: 241 -KDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALK 296
D + + V G G++G+E +++R+ E K V V+ T EAA K
Sbjct: 176 KDDKDLSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPK 227
Query: 297 VLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+L LV Y V+ + G EF+ A P +A N +++E+
Sbjct: 228 MLPMFSDDLV-SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG----- 271
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E Q EA +WT G + H+ + RG+ + L ++ H IF +GD
Sbjct: 272 EKQQLEAGTSVWTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIESHNDIFVIGD 324
Query: 416 SSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
SA + RPLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 325 CSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGTNDG 383
>gi|295700822|ref|YP_003608715.1| NADH dehydrogenase [Burkholderia sp. CCGE1002]
gi|295440035|gb|ADG19204.1| NADH dehydrogenase [Burkholderia sp. CCGE1002]
Length = 451
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 163/384 (42%), Gaps = 49/384 (12%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
Q+ LVD+ ++KP+L+E+ +G +D + +A +F + + L ++
Sbjct: 36 QITLVDRFPTHIWKPLLHEVAAGSMDPFTQELPYAAQARWHRFEFQQGDLTALDRANQRI 95
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
G + G +L E ++EYD LV+++G+ V GAAEF+ T+ +A R +
Sbjct: 96 TLGTVLDDDGAELLPER--VLEYDTLVIAIGSTTAFFGVKGAAEFSIALDTVSEAERFRK 153
Query: 230 KL------------SELERRN-----FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
+L +E R + I+VA+VG G +GVEL+A E +
Sbjct: 154 RLIAACMRAEHQAHEPVESRPGPGTWTSSEPRIQVAIVGGGATGVELSA------ELRNT 207
Query: 273 VQAINVETTICPTGTPGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGA 331
Q ++ L L R V +VL R + + V S
Sbjct: 208 AQVLSA--------------YGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATSEL 251
Query: 332 IPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390
+ + + + E+ P I+ ADL +W G K P V +L LP+
Sbjct: 252 LTKLGVKLMIGETVAEVAPGYIRTASGHTVRADLTVWAAGIKA--PAVL---TQLDGLPV 306
Query: 391 NARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAI 449
N GQ TL + IFALGD +A + R +P AQ A QQA F L A +
Sbjct: 307 NRLGQLIVRRTLQTEIDDNIFALGDCAACEWPGNERNVPPRAQAAHQQASFLMKGLAARL 366
Query: 450 NDRPLLPFRFQNLGEMMILGRNDA 473
+RPL F +++ G ++ LG A
Sbjct: 367 ENRPLPEFTYRDFGSLVSLGHFSA 390
>gi|241663632|ref|YP_002981992.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ralstonia pickettii 12D]
gi|240865659|gb|ACS63320.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Ralstonia pickettii 12D]
Length = 444
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 166/401 (41%), Gaps = 69/401 (17%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV+LVD++ ++KP+L+E+ +G +D +A G +F + +K L
Sbjct: 43 QVILVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRVTKSI 102
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ G VL E + YD LVLS+G+ VPG AE A T A R R
Sbjct: 103 IVSGCVDADGTEVLPERA--ISYDTLVLSIGSVTHFFGVPGTAEHAIALDTAWQAERFRR 160
Query: 230 KL--SELERRNFGKDS--LIRVAVVGCGYSGVELAATVS-----------ERLEEKGIVQ 274
KL + + +N D+ + +A+VG G +GVEL+A + +L+ + ++
Sbjct: 161 KLIAACMRAQNGVGDARPQVDIAIVGAGATGVELSAELRNTAHVLAAYGLHKLDPRHDIR 220
Query: 275 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--RRVGEFEASVKQPESG-A 331
+E G P + +SA +L+ V I RV E AS SG +
Sbjct: 221 IHLIE------GGPRILPVLKERISAATTELLHKLDVDVITSERVTEVTASAVNTASGKS 274
Query: 332 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391
IP ADL +W G + P LP+N
Sbjct: 275 IP----------------------------ADLTVWAAGIRA------PSVLGELGLPVN 300
Query: 392 ARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450
GQ TL V+G I+A GD +S + +P AQ A QQA + L +
Sbjct: 301 KLGQVIVSRTLQVEGDDSIYAFGDCASCPWPEASTSVPPRAQAAHQQATYLFDALRKRME 360
Query: 451 DRPLLPFRFQNLGEMMILGRNDAAVS--------PSFVEGV 483
+P+ PF F++LG ++ LG A S F+EG+
Sbjct: 361 GKPVQPFAFKDLGSLVSLGHFSAVGSLMGGLIGGSMFIEGL 401
>gi|118577016|ref|YP_876759.1| NADH dehydrogenase, FAD-containing subunit [Cenarchaeum symbiosum
A]
gi|118195537|gb|ABK78455.1| NADH dehydrogenase, FAD-containing subunit [Cenarchaeum symbiosum
A]
Length = 417
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 173/423 (40%), Gaps = 56/423 (13%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
D ++ +V + +F PML ++ SG ++ I + T F++ RVK + P
Sbjct: 4 DADVEITMVSEDNFLLFTPMLPQVASGMIETRHIVMPIRTICDRT--TFYEGRVKNIDP- 60
Query: 166 DHLGVNGPMACTHGGTVLL-----ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFST 220
+G +V L + G+ + YD+LVL+LG++ + + A+ T
Sbjct: 61 ------------YGKSVDLWGTREKRGISITYDFLVLALGSQTNFFGLSDVEKNAYTMKT 108
Query: 221 LEDACRV-DRKLSELERRNFGKDSLIR-----VAVVGCGYSGVELAATVSERLEEKGIVQ 274
L DA + +R + LE+ D ++R +VG G++G+E A + + L +
Sbjct: 109 LGDAVVLRNRVVDMLEQAENETDPILRGTLLTFVIVGGGFAGIETAGEILDLLLD----- 163
Query: 275 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA-IP 333
P R+ V+ + +L F + + A K E G I
Sbjct: 164 --------ARKHYPNIRKDDFSVVVLEALGAILPGFDEKLAKF----AHEKLLEKGMDIR 211
Query: 334 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393
A D + + G E I + ++WT G V P N L +
Sbjct: 212 LRTAVSGFDGTEVSFKGLDGGGEDAI-RTNTLVWTAG-------VTPVNTIKRSLFKTEK 263
Query: 394 GQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDR 452
G+ D L V P +FA+GD + D SGRP P TAQ+A Q + NL A I
Sbjct: 264 GKIVVDGFLAVPEFPGVFAVGDCALSVDPGSGRPFPPTAQLAEAQGETVAHNLQALIRGG 323
Query: 453 PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 512
+ F F+ G+M ++G+ S G + G + YL ++P E R++V
Sbjct: 324 GMKAFTFKQKGQMAVIGKRTGIAS---FLGANIAGFWAWFLWRNVYLSKIPRMEKRIRVL 380
Query: 513 VSW 515
+ W
Sbjct: 381 LDW 383
>gi|411118962|ref|ZP_11391342.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710825|gb|EKQ68332.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 453
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 167/429 (38%), Gaps = 76/429 (17%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHL 168
QV LVD+ +F+P+LY++ +G + +I+ +L+N+ D V + P
Sbjct: 35 QVTLVDRRNFHLFQPLLYQVATGTLSPADISSPLRGILSNSRNTTVLMDEVLDVDPQQQ- 93
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
++ G + YD L+L+ G A T+EDA +
Sbjct: 94 -------------TVITRGQQLPYDTLILATGVSHHYFGNDQWKTTAPGLKTVEDALEMR 140
Query: 229 RKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI-NVETT 281
R++ +E E + + + +VG G +GVELA ++E L + Q N++TT
Sbjct: 141 RRIFMAFEAAEKETDPSKRQAWLTFVIVGGGPTGVELAGAIAE-LAFNTLKQDFRNIDTT 199
Query: 282 ------------ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
I P P A + L+ LG V+ V E
Sbjct: 200 EAKVILLEGMDRILPPYAPELSAKAAEALTQ------LGVSVQTKTLVTNIEH------- 246
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD-- 387
NI K D Q A +LW G K L D
Sbjct: 247 ----NIVTAKQGDTI-------------QQIPARTILWAAGVK-----ASGMGKILADRT 284
Query: 388 -LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 446
+ L+ G+ + L + G+P IF +GD + +PLP A VA Q+ F L
Sbjct: 285 GVTLDRVGRVIVEPDLSIAGYPNIFVIGDLANYSHQGEKPLPGVAPVAMQEGQFVAKLLK 344
Query: 447 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 506
A + ++P+ FR+ + G + ++G+N A + V L GPI A++ L +
Sbjct: 345 ARLQNQPVPTFRYHDAGSLAVIGQNKAVAD---LNNVKLSGPIAWFVWVFAHIFYLIEYD 401
Query: 507 HRLKVGVSW 515
++L V + W
Sbjct: 402 NKLIVMLQW 410
>gi|27467553|ref|NP_764190.1| NADH dehydrogenase [Staphylococcus epidermidis ATCC 12228]
gi|81842998|sp|Q8CPV5.1|Y635_STAES RecName: Full=NADH dehydrogenase-like protein SE_0635
gi|27315097|gb|AAO04232.1|AE016746_22 putative NADH dehydrogenase [Staphylococcus epidermidis ATCC 12228]
Length = 402
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL K++V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G E AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV- 215
Query: 308 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y V+ + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSV 260
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
WT G + H+ + RG+ + L ++GH IF +GD SA + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPADEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|384106283|ref|ZP_10007190.1| NADH dehydrogenase [Rhodococcus imtechensis RKJ300]
gi|383833619|gb|EID73069.1| NADH dehydrogenase [Rhodococcus imtechensis RKJ300]
Length = 460
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 178/427 (41%), Gaps = 73/427 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + R+ I+G GFGGL+ A L VL+VD++ +F+P+L+++ +G +
Sbjct: 8 EARHRVVIIGSGFGGLFAAKALRR------ADVDVLVVDRTSHHLFQPLLFQVATGILSE 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIAP +L V L +D + TH G EYD L+
Sbjct: 62 GEIAPSTRMVLKKQS----NASVMLGDVTDIDLAARRITSTHQGRT-----TTTEYDSLI 112
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-----SLIRVAVV 250
+S GA AE A T++DA + R L ER D L+ VV
Sbjct: 113 VSAGARQSYFGNDHFAEHAPGMKTIDDALELRGRILGAFERAELSTDPEERARLLTFVVV 172
Query: 251 GCGYSGVELAATVSERLEEKGIVQAI-NVETTICPTGTPGNREAALKVLSARKVQL---- 305
G G +GVE+A ++E L + ++ A N++T C +A + +L A L
Sbjct: 173 GAGPTGVEMAGQIAE-LAHRTLLGAYRNIDT--C--------DAQIVLLDAASAVLPPFG 221
Query: 306 -VLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD----KNSDKYILELQPAIKGLESQIF 360
LG +R+ + V+ A+ ++ AD K+ + ++ A K
Sbjct: 222 DRLGSA--AAKRLEKIGVEVRL--GAAVTDVDADGVTIKDGRGETVRIESACK------- 270
Query: 361 EADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418
+W+ G + PL + + L+ G+ E L V GH +F +GD A
Sbjct: 271 -----VWSAGVEASPLARQLAEQSG----AELDRAGRIAVREDLTVPGHREVFVIGDMMA 321
Query: 419 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL----LPFRFQNLGEMMILGRNDAA 474
RD LP AQVA Q +A + A R +PFR+++ G M + R +A
Sbjct: 322 -RDR----LPGVAQVAIQGGRYAARQIAADAGGRATSPDRVPFRYRDKGSMATISRFNAV 376
Query: 475 VSPSFVE 481
V +E
Sbjct: 377 VKVGGIE 383
>gi|254424493|ref|ZP_05038211.1| FAD dependent oxidoreductase, putative [Synechococcus sp. PCC 7335]
gi|196191982|gb|EDX86946.1| FAD dependent oxidoreductase, putative [Synechococcus sp. PCC 7335]
Length = 466
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 166/395 (42%), Gaps = 72/395 (18%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHL 168
+V L+D+ +F+P+LY++ +G + A +I+ +L+ VQ V + P+ +
Sbjct: 45 KVTLIDKRNFHLFQPLLYQVATGGLSAGDISSPLRSVLSKQKNVQVLMGEVTGIEPTTQI 104
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL-------DVVPGAAEFAFPFSTL 221
V L++G V YD L+++ G+ D+ PG T+
Sbjct: 105 -------------VTLKNGETVSYDSLIVATGSSHHYFGKDEWSDIAPG-------MKTI 144
Query: 222 EDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE--KGIV 273
EDA V R++ +E E +++L+ +VG G +GVELA ++E E +
Sbjct: 145 EDALEVRRRIFLAFEAAEKESDPVRREALLTFFIVGGGPTGVELAGALAELAYETLREDF 204
Query: 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 333
++IN PG KV L+ G G+ AS K ++
Sbjct: 205 RSIN----------PGET----------KVVLLEGMDRVLPPYPGDLSASAKN----SLE 240
Query: 334 NIAADKNSDKYILELQPAIKGLES----QIFEADLVLWTVGSKPLLPHVEPPNNRLHD-- 387
+ + ++ + ++ I L++ + +A VLW G K P + D
Sbjct: 241 KLGVEVRTNTLVTNIEGDIVTLKNGDSIEKVQAFTVLWAAGIK-----ASPMGKAIADQT 295
Query: 388 -LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 446
L+ G+ L V G I+ GD + +S PLP TA A QQ + ++
Sbjct: 296 GAELDRIGRIIVGPDLSVPGCSNIYIAGDLAHYAHNSESPLPGTASTAMQQGSYLADSIQ 355
Query: 447 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+ + + PF ++N G M ++GRN+A F +
Sbjct: 356 RRLEGQSVSPFEYKNKGSMAVIGRNEAVADLGFAK 390
>gi|414168093|ref|ZP_11424297.1| hypothetical protein HMPREF9696_02152 [Afipia clevelandensis ATCC
49720]
gi|410888136|gb|EKS35940.1| hypothetical protein HMPREF9696_02152 [Afipia clevelandensis ATCC
49720]
Length = 425
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/458 (24%), Positives = 185/458 (40%), Gaps = 84/458 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I I+G GFGGL A L S + ++ ++DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVIVGAGFGGLEAARHLAS------ARVRITVIDQRNHHLFQPLLYQVGTASLATSEI 60
Query: 140 A-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A P L ++ V RV +GV+ T TV++E V +D L+L+
Sbjct: 61 AWPIRYLLRRHSNVTTLLGRV--------IGVD-----TGNKTVVVEDEKPVPFDTLILA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDS-----LIRVAVVGC 252
GA +A TLEDA ++ R+ LS E+ + + L+ ++G
Sbjct: 108 TGARHAYFGHDEWEPYAPGLKTLEDATKIRRRILSAFEQAEWATNEAERARLLTFVIIGA 167
Query: 253 GYSGVELAATVSERLEE------------KGIVQAINVETTICPTGTPGNREAALKVLSA 300
G +GVELA T++E + K V I I T + A + L+
Sbjct: 168 GPTGVELAGTIAELAHDTLRGDFRNFDTRKARVILIEAGPRILSGFTEDLSDYAQRALTR 227
Query: 301 RKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
V++ LG+ V RC E G L +
Sbjct: 228 LGVEIRLGHAVSRC-------------SEEGV----------------------ELGGEF 252
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
A ++W G P LH P + G+ L V GHP IF +GD++ +
Sbjct: 253 LPASTIIWAAGVA-----ASPAAEWLH-APADRAGRVMVMPDLTVPGHPDIFVIGDAAHV 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDAAVSPS 478
+ G+ +P A A Q+ + + A + F ++N G + +G+ A V
Sbjct: 307 ESTDGKLVPGVAPAAKQEGQYVARAIQARLRGEKFGENFVYKNAGNLATIGKRAAIVDFG 366
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+++ L G + +A++ L +RL V ++WL
Sbjct: 367 WIQ---LKGRLAWWIWGIAHIFFLIGLRNRLAVAMNWL 401
>gi|307152048|ref|YP_003887432.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306982276|gb|ADN14157.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 451
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 190/454 (41%), Gaps = 67/454 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ I+GGGFGGLYTA L+ D QV L+D+ +F+P+LY++ +G +
Sbjct: 7 RKPRVVIVGGGFGGLYTAKALK------DAPVQVTLIDKRNFHLFQPLLYQVATGSISPA 60
Query: 138 EI-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I +P L + +Q D V L P + V+L+ +EYD L+
Sbjct: 61 DISSPLRLVLRHHKNIQVLLDEVIDLDPENK-------------QVILKGHEPIEYDILI 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVV 250
++ G FA T+EDA + R++ +E E + + + +V
Sbjct: 108 VATGVSHFYFGNDHWKTFAPGLKTIEDALEIRRRIFMAFEAAEKESDPEIRQAWLTFVIV 167
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G G +GVELA ++E ++T A K+L + +L +
Sbjct: 168 GGGPTGVELAGAIAEIAHSSLTGDFRQIDT------------GAAKILLLEGMDRLLPPY 215
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVL 366
E S K ES + + + ++ + +G + + +A +L
Sbjct: 216 PP--------ELSAKAEES--LTRFGVTIQTKTMVTDVSEGMVTIRQGEQVKNIQAKTIL 265
Query: 367 WTVGSKP-----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
W G K +L H L+ G+ + L + HP IF +GD +
Sbjct: 266 WAAGVKASSMGEVLAHRTGAK-------LDRAGRVIVEPDLSIAQHPNIFVIGDLANFPH 318
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
+PLP A VA QQ ++ L + +LPF + + G + ++G + A V+ FV+
Sbjct: 319 QDDKPLPGVAPVAMQQGEYMAQLLKKRLKGEAVLPFYYVDHGSLAVIGHHSAVVNLGFVK 378
Query: 482 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
L G + A++ L +++L V V W
Sbjct: 379 ---LHGLLAWFIWLWAHIYYLIEFDNKLVVMVQW 409
>gi|119719144|ref|YP_919639.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Thermofilum pendens Hrk 5]
gi|119524264|gb|ABL77636.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Thermofilum pendens Hrk 5]
Length = 391
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 151/349 (43%), Gaps = 70/349 (20%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ +V+LVD+S RFV+ P L L+SG+ ++ ++ G +F V + +
Sbjct: 29 ERNRVVLVDKSRRFVYLPSLPYLISGKKTVEDLTEPLEEIAKRLGAEFLLGEVTRVSLQE 88
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
T+ L +G + YD+LVL+ GA + +PGA + A P LED R
Sbjct: 89 K-------------TIELSNGEKLRYDYLVLAAGATTEYYGIPGAHQ-ALPAWRLEDYER 134
Query: 227 VDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG 286
+ R+L + S RV + G G +GVE+A V+E+ E K V + + PT
Sbjct: 135 IVRELGKC-------GSGCRVCIAGGGLTGVEVAGEVAEKYEGKSEVVVVEKMQMLMPT- 186
Query: 287 TPGNREAALKV----LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 342
N + A K+ LS++ V+++ G V + ++KN
Sbjct: 187 --LNSQRASKIIEEFLSSKGVRIIKGNGVSSV----------------------SEKN-- 220
Query: 343 KYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH-DLPLNARGQAETDET 401
L L+ + + D+V+WTVG V PP+ R D+P+ RG T
Sbjct: 221 ---LNLE------DGTSIQCDIVVWTVG-------VRPPDIRFDVDVPVKGRGWICVKPT 264
Query: 402 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450
L V ++A+GD + S + A+ A Q A N+ I+
Sbjct: 265 LQVMSRDDVYAIGDINHFAVDSDYAMK-MAEEAILQGKTAAKNIALQIS 312
>gi|417658581|ref|ZP_12308205.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU045]
gi|417909993|ref|ZP_12553725.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU037]
gi|417913511|ref|ZP_12557177.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU109]
gi|418326511|ref|ZP_12937695.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU071]
gi|418624346|ref|ZP_13187022.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU125]
gi|418628893|ref|ZP_13191413.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU127]
gi|419770093|ref|ZP_14296179.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770751|ref|ZP_14296818.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
subsp. aureus IS-K]
gi|420166880|ref|ZP_14673558.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM088]
gi|420171322|ref|ZP_14677866.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM070]
gi|420172177|ref|ZP_14678692.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM067]
gi|420182570|ref|ZP_14688706.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM049]
gi|420194392|ref|ZP_14700206.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM021]
gi|420198251|ref|ZP_14703966.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM020]
gi|420203136|ref|ZP_14708720.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM018]
gi|420206721|ref|ZP_14712226.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM008]
gi|420210360|ref|ZP_14715788.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM003]
gi|420215560|ref|ZP_14720825.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIH05005]
gi|420218284|ref|ZP_14723380.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIH05001]
gi|420221128|ref|ZP_14726081.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIH04008]
gi|420222243|ref|ZP_14727165.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH08001]
gi|420225169|ref|ZP_14730004.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH06004]
gi|420226758|ref|ZP_14731536.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH05003]
gi|420229078|ref|ZP_14733788.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH04003]
gi|420231440|ref|ZP_14736090.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH051668]
gi|421607549|ref|ZP_16048788.1| NADH dehydrogenase [Staphylococcus epidermidis AU12-03]
gi|329737593|gb|EGG73839.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU045]
gi|341651875|gb|EGS75666.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU037]
gi|341655321|gb|EGS79050.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU109]
gi|365225432|gb|EHM66676.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU071]
gi|374827864|gb|EHR91721.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU125]
gi|374835273|gb|EHR98892.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis VCU127]
gi|383357556|gb|EID35025.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
subsp. aureus IS-250]
gi|383363097|gb|EID40442.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
subsp. aureus IS-K]
gi|394232093|gb|EJD77712.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM088]
gi|394238195|gb|EJD83673.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM070]
gi|394243648|gb|EJD89010.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM067]
gi|394250115|gb|EJD95317.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM049]
gi|394264637|gb|EJE09312.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM020]
gi|394264782|gb|EJE09453.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM021]
gi|394268467|gb|EJE13024.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM018]
gi|394276412|gb|EJE20752.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM003]
gi|394276824|gb|EJE21157.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM008]
gi|394282058|gb|EJE26271.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIH05005]
gi|394284575|gb|EJE28683.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIH05001]
gi|394285087|gb|EJE29173.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIH04008]
gi|394289479|gb|EJE33360.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH08001]
gi|394293913|gb|EJE37610.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH06004]
gi|394298207|gb|EJE41787.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH05003]
gi|394299603|gb|EJE43142.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH04003]
gi|394302666|gb|EJE46104.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
epidermidis NIH051668]
gi|406656754|gb|EKC83154.1| NADH dehydrogenase [Staphylococcus epidermidis AU12-03]
Length = 402
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 171/407 (42%), Gaps = 58/407 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL K++V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKNKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVG 251
V++LG + + G E AF + + ++ R K + D + + V G
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHIEDKFANYAASKEKDDKDLSILVGG 165
Query: 252 CGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 166 AGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV-S 216
Query: 309 YFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y V+ + G EF+ A P +A N +++E+ E Q EA +W
Sbjct: 217 YAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRP 426
T G + H+ + RG+ + L ++GH IF +GD SA + RP
Sbjct: 262 TAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEERP 314
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 315 LPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|404369785|ref|ZP_10975115.1| hypothetical protein CSBG_02910 [Clostridium sp. 7_2_43FAA]
gi|226914083|gb|EEH99284.1| hypothetical protein CSBG_02910 [Clostridium sp. 7_2_43FAA]
Length = 624
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/408 (22%), Positives = 172/408 (42%), Gaps = 72/408 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I +LG G+GG+ TA +L + + ++ L+D++ L+E+ G V
Sbjct: 3 KNKILVLGAGYGGVRTAKKLAKKY-KKNNDVEITLIDRNPYHTLMTELHEVAGGRVHPES 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ + + V D ++ + N + T+G YD+LV+
Sbjct: 62 VQVELCKIFGKSKVNVVTDFIEKVDTD-----NKVVKTTYGE---------YSYDYLVIG 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE------LERRNFGKDSLIRVAVVGC 252
G+EP VPG E F + EDA ++ + + + LER + ++ V G
Sbjct: 108 TGSEPAFFGVPGVKENGFTLWSFEDALKIRKHIQDMFAKASLERNAAKRKEMLTFIVAGS 167
Query: 253 GYSGVELAATVSERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G++G+E+A E LE K + + NV+ + E LKV+ A +G +
Sbjct: 168 GFTGIEMAG---ELLEWKTRLAREYNVDES----------EVTLKVVEA------MGTIL 208
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKY---ILELQPAIKGLESQI-------FE 361
+ R KQ + A+K K+ IL+ P ++ E++I
Sbjct: 209 NMLDR--------KQADK-------AEKYMVKHGMEILKNSPIVEVTENKIVLKSGEKIN 253
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
++WT G + + + + L G+ +T+E + G +F +GD + +
Sbjct: 254 TRTLIWTCGIQA------NQDAKEYGLDTARAGRLQTNEFMQAVGKKDVFVVGDMAYFEE 307
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
+G+ P + A Q AD N+ A+I ++ + F+ + G M+ +G
Sbjct: 308 EAGKGTPQIVEAAVQTADTVVKNIVASIENKEMQKFQGKYHGFMVSIG 355
>gi|420177627|ref|ZP_14683963.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM057]
gi|420179410|ref|ZP_14685703.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM053]
gi|394248011|gb|EJD93253.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM057]
gi|394253925|gb|EJD98913.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM053]
Length = 402
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 173/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVV 250
V++LG + + G E AF + + ++ R + E + N+ D + + V
Sbjct: 106 VVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 GCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G G++G+E +++R+ E K V V+ T EAA K+L LV
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCV--------EAAPKMLPMFSDDLV- 215
Query: 308 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
Y V+ + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVKYLEDRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSV 260
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
WT G + H+ + RG+ + L ++ H IF +GD SA + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIESHNDIFVIGDCSAFIPAGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + N+ +N F++ N G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGTNDG 361
>gi|414173433|ref|ZP_11428196.1| hypothetical protein HMPREF9695_01842 [Afipia broomeae ATCC 49717]
gi|410892085|gb|EKS39881.1| hypothetical protein HMPREF9695_01842 [Afipia broomeae ATCC 49717]
Length = 429
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 106/444 (23%), Positives = 183/444 (41%), Gaps = 56/444 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I I+G GFGGL A L + ++ +VDQ +F+P+LY++ + + EI
Sbjct: 12 PHIVIVGAGFGGLEAARGLA------EAPVRITIVDQRNHHLFQPLLYQVATATLATSEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L V+ K+ LL +GVN T VLL+ + +D L+L+
Sbjct: 66 AWPVRHL-----VRRQKNVTTLLGSV--VGVN-----TQAKQVLLDGEEPIAFDTLILAT 113
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKD-----SLIRVAVVGCG 253
GA +A TLEDA ++ R+ L+ E+ + D + ++G G
Sbjct: 114 GARHAYFGHDEWEPYAPGLKTLEDATKIRRRILAAFEQAEWETDPAERAKFLTFVIIGAG 173
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+GVELA T++E + + N +T SAR V + G
Sbjct: 174 PTGVELAGTIAELARDTLRDEFRNFDTR-----------------SARVVLIEAGP---- 212
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373
R + F + A+ + + + + L + A ++W G
Sbjct: 213 -RILSSFSEDLSDYAQRALTRLGVEVKLGHAVSKCGEGGVELGGEFLPAKTIIWAAGVA- 270
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P LH +P + G+ + L GHP IF +GD++ + + G+ +P A
Sbjct: 271 ----ASPAAEWLH-VPADRAGRVLVEPDLTAPGHPDIFVIGDAAHVESADGKLVPGVAPA 325
Query: 434 AFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 492
A Q+ + + + R P F ++N G + +G+ A V +++ L G +
Sbjct: 326 AKQEGQYVARRIMERLRGRNPGERFAYKNAGNLATIGKRAAIVDFGWIK---LKGRLAWW 382
Query: 493 ARKLAYLIRLPTDEHRLKVGVSWL 516
+A++ L +RL V ++WL
Sbjct: 383 MWGVAHIFFLIGLRNRLAVAMNWL 406
>gi|424882372|ref|ZP_18306004.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WU95]
gi|392518735|gb|EIW43467.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WU95]
Length = 421
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 179/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 RITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ +GV+ + TV L +G+ + Y+ LVL+ GA EP V PG
Sbjct: 77 EVMGVD-----SGAKTVSLRNGMTLSYETLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R++ +E+E +D+L+ +VG G +GVELA ++E
Sbjct: 124 --LKTLEDATTIRRRVLLAFEKAEMESDPAVRDALLTFTIVGAGPTGVELAGIIAELAHF 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V +RV F +
Sbjct: 182 TLPKEFRNIDT--------------------RKTRVVL---VEAGQRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + + K + E + + ++W G P R +
Sbjct: 219 QKALEKLGVEIHLGKPVTECNADGVKIGETFVASRTIVWAAGV------TASPAARWLGV 272
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
+ G+ ++ L G P +F +GD++++ G+P+P A A QQ + + A
Sbjct: 273 AADRAGRVVVEKDLSAPGLPDVFVVGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRAR 332
Query: 449 INDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
I+ +P PFR+ + G + +G++ A + ++ L G + LA++ L
Sbjct: 333 ISGKPTPAPFRYWHQGSLATIGKSAAIIDFGRIK---LKGWLAWWIWGLAHIYFLIGTRS 389
Query: 508 RLKVGVSWL 516
R V SWL
Sbjct: 390 RFSVAWSWL 398
>gi|418720839|ref|ZP_13280033.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. UI 09149]
gi|410742743|gb|EKQ91490.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. UI 09149]
Length = 422
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 98/457 (21%), Positives = 185/457 (40%), Gaps = 75/457 (16%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ETRKRKIVVVGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDW 194
+IA L+ +R+ + V G T + YD+
Sbjct: 58 PADIAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSTNYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVA 248
L+LS GA+ ++ L+DA R+ KL E+ D +L+
Sbjct: 104 LILSAGAKSSYFGNDHWEKYTIGLKNLKDALRIRHKLLISFEKAELSGDPEVVKALLNYV 163
Query: 249 VVGCGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302
++G G +GVELA +++E R E I A++ T I EAA ++L+
Sbjct: 164 IIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLTTFD 214
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
L GEF + K+ ES + + + ++++ LE ++
Sbjct: 215 PSL------------GEF--TKKRLESRGVEVLTGTR-----VIDINERGVQLEEKMITT 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
V+W G + N + + L+ G+ DE ++GHP +F +GD +
Sbjct: 256 QTVIWAAGVQA---------NTIASTLGVTLDRGGRVIVDEFCNIEGHPEVFVIGDIANY 306
Query: 420 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 479
PLP + VA QQ + + + ++ FR+ + G M +GR DA
Sbjct: 307 SKGLEHPLPGVSPVAMQQGRYVAALIQGDLKNKKRKSFRYVDKGSMATIGRTDAVAQMGV 366
Query: 480 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ + G G A +L ++++ + ++W+
Sbjct: 367 LR---MRGLFGWFAWLFVHLFYQVGFKNKVTILITWV 400
>gi|375143577|ref|YP_005006018.1| NADH dehydrogenase (ubiquinone) [Niastella koreensis GR20-10]
gi|361057623|gb|AEV96614.1| NADH dehydrogenase (ubiquinone) [Niastella koreensis GR20-10]
Length = 450
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 180/466 (38%), Gaps = 86/466 (18%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P K PR+ I+GGGF G A +L QV+L+D++ + F+P+LY++ + +
Sbjct: 15 PVSKNPRVVIVGGGFAGTELAKKLSK------ASLQVVLIDKNNYYTFQPLLYQVATAGL 68
Query: 135 DAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEY 192
+A I + +L FF+ V+ + P + ++E+ + +V Y
Sbjct: 69 NAPSIVYPYRKILEKGDDTFFRLAEVESVYPVER---------------IIETSIGLVHY 113
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA--------CRVDRKLSELERRNFGKDSL 244
D+LV++ GA + A ++EDA C ++ L + +SL
Sbjct: 114 DYLVIATGATTNFYGNKQIEQHAIAMKSVEDALMLRNTIICNFEKALQIGDEEQL--NSL 171
Query: 245 IRVAVVGCGYSGVELAATVSERLEE------------KGIVQAINVETTICPTGTPGNRE 292
+ +VG G +GVE+A +SE + K + I I +
Sbjct: 172 MDFVIVGGGPTGVEIAGALSELRKHVFPKDYKELDFIKMDIHLIQSGDHILKGMSHEAST 231
Query: 293 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 352
ALK L VQ+ L RRV F+ + D N +K I
Sbjct: 232 HALKFLEKAGVQVWLN------RRVKSFDGY----------TVVLD-NGEKLI------- 267
Query: 353 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 412
++W G P L + + + + DE V G+ IFA
Sbjct: 268 ---------TRTLIWAAGVTG------APIKGLSAECITSGNRLKVDEYNRVAGYENIFA 312
Query: 413 LGDSSALRDSS-GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
LGD + + + P AQ A QQ G NL + +PL F + + G + +GRN
Sbjct: 313 LGDIAEMATAELPEGYPMLAQPAIQQGRLLGDNLPKLVAGKPLKKFVYTDKGSLATIGRN 372
Query: 472 DAAVSPSFV-EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
A F + G +L + ++RL V ++W+
Sbjct: 373 KAVADVKFFNKEFKTQGLFAWFIWLFVHLFSIIGFKNRLLVFINWI 418
>gi|329767226|ref|ZP_08258753.1| hypothetical protein HMPREF0428_00450 [Gemella haemolysans M341]
gi|328836893|gb|EGF86540.1| hypothetical protein HMPREF0428_00450 [Gemella haemolysans M341]
Length = 396
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 176/414 (42%), Gaps = 84/414 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G+ GL T L+ + K V LV+++ L+E+ +G + A +I
Sbjct: 3 NVVILGAGYAGLTTLKGLKKAAKAGEVK--VTLVNKNSYHYDTVNLHEVSAGNIPAKDIC 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
DL++ GV+F +D V + L +L ++YD LV+ LG
Sbjct: 61 IDIKDLVS-PGVEFVQDEVIKIDVEKKL--------------VLTKKHELDYDVLVVGLG 105
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVD-------RKLSELERRNFGKDSLIRVAVVGCG 253
+P+ + G AE A P + + A ++ RK + E ++ KD I V V G G
Sbjct: 106 FQPETFGIEGMAENALPIANVNAAEKIAATLEDNFRKYATSEEKDV-KD--ISVIVGGTG 162
Query: 254 YSGVELAATVSERLEE----KGI------VQAINVETTICPTGTPGNREAALKVLSARKV 303
+G+E + R +E GI + ++ T+ P T + A K L +
Sbjct: 163 LAGMEFLGELVHRKKELCSKYGIDEKLVKIYGLDAAPTLLPMFTKEYSDYARKYLEDNGI 222
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 363
+++LG A +K GA D + +E + G ++ +
Sbjct: 223 EIILG-------------AGIK----GA--------TKDSFTIE----VDGERKDLYAST 253
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHD--LP-LNARGQAETDETLCVKGHPRIFALGDSSALR 420
LV WT G + N+L D P L RG+ T + L V GH I+ +GD +A
Sbjct: 254 LV-WTAGVR---------GNKLMDEAFPELAKRGRLVTTQQLTVPGHDEIYIVGDCAAFI 303
Query: 421 DSSG-RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
++ RP P TAQ+A Q + G A I+ + + F++ N G + LG D
Sbjct: 304 ETGQERPYPTTAQIANQMGAYVG----ARISGKQVGDFKYINRGVVCSLGHKDG 353
>gi|429858258|gb|ELA33084.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Colletotrichum gloeosporioides Nara gc5]
Length = 352
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 70/387 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWEI 139
+ I+G GF G+++AL L+ +K Q V+++ V +P LY E +A +
Sbjct: 5 VVIIGAGFAGVWSALSATRLINLKNKTDQVKVVVIAPEPTLVIRPRLY-----ESNAASM 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ L + G+ F + + + + V+ P + V+Y ++++
Sbjct: 60 SHPLMTLFQSAGIDFVQGTAESIGGIRQSVQVHTPTG----------KDITVKYSQIIIA 109
Query: 199 LGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE--RRNFGKDSLIRVAVVGCGYS 255
G+ K V G + AF TL+ A R++R L L +++ +D+++ V G G++
Sbjct: 110 TGSRLNKPQSVTGLEQHAFDIDTLDAAARLERHLESLASYQQSAARDTIV---VCGAGFT 166
Query: 256 GVELAATVSERLE--EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
G+ELA + +RL EK + ++ + P PG R L+ L ++ LG V
Sbjct: 167 GIELATELPKRLSHIEKPRIVLVDSAKEVGPELGPGLRPIILQALEELHIETKLGSAVSA 226
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK- 372
+ + G AS ++ IP A +WT G +
Sbjct: 227 VDQEGVILASGER-----IPTKTA----------------------------VWTAGMRP 253
Query: 373 -PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPAT 430
PL +E P + L L ++ Q T++ IFA GD++ + D SG +
Sbjct: 254 SPLAQQIEGPKDSLGRLHVDMYLQTSTNKD--------IFATGDAAYVIADPSGHHALMS 305
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPF 457
Q A Q +G N AA+ + P++ +
Sbjct: 306 CQHALQHGRVSGHNAAAALLEEPMMEY 332
>gi|421897738|ref|ZP_16328105.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum MolK2]
gi|206588944|emb|CAQ35906.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum MolK2]
Length = 441
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 184/427 (43%), Gaps = 46/427 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +++LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARIVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKL--SELERRNFGKD--SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281
R RKL + + +N D + + +A+VG G +GVEL+A + N
Sbjct: 154 RFRRKLIAACMRAQNGVGDARAQVDIAIVGAGATGVELSAELR------------NTAHV 201
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341
+ G L L ++ L+ G R + V + + + D +
Sbjct: 202 LAAYGLH-----KLDPLRDIRIHLIEG----SPRILAALSERVSAETTKLLHKLNVDVIT 252
Query: 342 DKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 400
+ ++E+ A+K + ADL +W G + P LPL+ GQ
Sbjct: 253 GERVVEVTDSAVKTGSGKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSR 306
Query: 401 TLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
TL V+G I+A GD +S + +P AQ A QQA + + + +P+ PF F
Sbjct: 307 TLQVEGDDSIYAFGDCASCPWPEASTSVPPRAQAAHQQATYLYKAMRRRLQGKPVEPFGF 366
Query: 460 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLT 517
++LG ++ LG A G + G IG + + RL T +R+ V +
Sbjct: 367 KDLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFL 419
Query: 518 KSAIDSV 524
+ A+D+V
Sbjct: 420 RMALDTV 426
>gi|332523310|ref|ZP_08399562.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
porcinus str. Jelinkova 176]
gi|332314574|gb|EGJ27559.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
porcinus str. Jelinkova 176]
Length = 403
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 100/413 (24%), Positives = 177/413 (42%), Gaps = 59/413 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL T L+ + + LVD+++ L+E+ +G +I+
Sbjct: 4 ILVLGAGYAGLKTVRNLQ----KQTGDFHITLVDRNDYHYEATELHEVAAGSQPKEKISY 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ V F +D V + P D TV L++ + YD++V+SLG
Sbjct: 60 PIQDVINPKKVTFIQDDVVKVNPED-------------STVELKNSGTLHYDYVVVSLGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKD-SLIRVAVVGCGYSGVEL 259
+ + GA E A + A + L +E+ KD + +R+ + G G++G+EL
Sbjct: 107 CSETFGISGAKENALQMVDINTAENIHHHILHMMEKYRETKDKNYLRLLICGAGFTGIEL 166
Query: 260 A-ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
A A V ER I + I EAA ++L +L Y V I ++G
Sbjct: 167 AGALVDERKRYAKIAGVAEDQIEIVCV------EAATRILPMFDDKLAQ-YGVDLIEKLG 219
Query: 319 ---EFEASVKQPESGAIPNIAA-DKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SK 372
+ +K+ + G + + + D+N++++ + A+ ++WT G
Sbjct: 220 VNLMLGSMIKEIKPGEVVYVTSPDENAERHSIA--------------AETIIWTTGVSGS 265
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 431
P++ R G+ ++ L + +++ LGD SAL D + RP P TA
Sbjct: 266 PIMGESGFAERR---------GRVVVNKDLRDPKYDKVYILGDVSALIDPETNRPFPTTA 316
Query: 432 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA--AVSPSFVEG 482
Q+A + A NL + F +++LG + +G A V S V+G
Sbjct: 317 QIATRMGAHAAKNLARQLKGEKTEDFNYKSLGTVASVGNTHAFGLVGKSKVKG 369
>gi|406886462|gb|EKD33487.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[uncultured bacterium]
Length = 417
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 161/387 (41%), Gaps = 62/387 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ I ILGGGF G+ TAL L SL + + +VD+ +F P+LYE+ +G +
Sbjct: 2 EQKNIVILGGGFAGIRTALDLGSLCHKRGMNCDIAVVDKMREHLFTPLLYEIATGLL--- 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLIVEY 192
E AD G D + L + GV A G V SG + +
Sbjct: 59 EERGHSADSALQKGACLSFD--ECLVKAKKAGVRFVHAEVTGVDASSRIVKCASGDSMPF 116
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGC 252
D LV++LG+E + G A+ A +L A + R++SE G D + + G
Sbjct: 117 DHLVIALGSEVNDYGIAGIAKNAVMMKSLAGAEYIRRRISEFVT---GSDREFNIIIGGA 173
Query: 253 GYSGVELAATVSERLEEKGI----------VQAINVETTICPTGTPGNREAALKVLSARK 302
G +GVE +A ++ + + + + + I + P R+ A + L
Sbjct: 174 GATGVETSAELANFFQSRVYKTKPALAAPHITLVEAQDDILSSFKPSLRKIARERLHQLG 233
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
+++++ + R E SV GA+ L QI
Sbjct: 234 IEILVNTNIVEAR-----EGSVVIKSVGAL----------------------LNKQI--- 263
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 422
DL++W G K P + + L +G + DE L V G I+ALGD +++R+
Sbjct: 264 DLLIWAGGIKA------PDFLKNFGVALTEKGFIDVDENLRVIGSENIWALGDCASVRN- 316
Query: 423 SGRPLPATAQVAFQQADFAGWNLWAAI 449
RP PA AQ A QA N+ +A+
Sbjct: 317 --RPAPALAQAAVSQAGAVAKNIASAL 341
>gi|406576155|ref|ZP_11051822.1| NADH dehydrogenase [Janibacter hoylei PVAS-1]
gi|404554434|gb|EKA59969.1| NADH dehydrogenase [Janibacter hoylei PVAS-1]
Length = 456
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 187/467 (40%), Gaps = 93/467 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+G GFGGL+ A L K +V L+ ++ +F+P+LY++ +G + +
Sbjct: 7 KHRVVIIGSGFGGLFAAKALSG------KDVEVTLISRTGHHLFQPLLYQVATGILSEGD 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP D+LA K+ +L + V G +H L + YD L+++
Sbjct: 61 IAPATRDILARD-----KNVRTILGDVTEIDVEGRTVTSHS----LNQATVTPYDSLIVA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-------------KDSLI 245
GA G FA ++D +D L EL R FG ++ L+
Sbjct: 112 AGAGQSY---FGNDHFARYAPGMKD---IDNAL-ELRGRIFGAFELAETSTDPEDRERLL 164
Query: 246 RVAVVGCGYSGVELAATVSERLEEKGIVQA---INVET--TICPTGTP------GNREAA 294
VVG G +GVE+A ++E L K + IN I G P G+R
Sbjct: 165 TFVVVGAGPTGVEMAGQIAE-LSHKTLAHEFRHINPRDARVILLDGAPQVLPSFGDRLGG 223
Query: 295 --LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 352
L R V++ LG V + G E K+ D + ++
Sbjct: 224 KTRASLEKRGVEVQLGAMVTEVDGTG-IEV----------------KDKDGTVRRIEAMT 266
Query: 353 KGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 410
K +W G + PL + ++ G+ +E L VKGHP I
Sbjct: 267 K------------VWAAGVAASPLGKMIADQAG----AEVDRAGRVHVEEDLTVKGHPEI 310
Query: 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILG 469
F +GD L+ P AQ+A Q +A + + + P PF +++ G M +
Sbjct: 311 FLVGDMINLKG-----YPGVAQLAIQGGRYAAKEILGRLEGKEPQAPFVYKDKGSMATIS 365
Query: 470 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ A S + + L G I A +L+ + ++R+ ++W+
Sbjct: 366 KYSAVAS---IGKIKLTGFIAWLAWLAVHLMAMVGFKNRISTLLNWI 409
>gi|352106262|ref|ZP_08961313.1| NADH dehydrogenase [Halomonas sp. HAL1]
gi|350597910|gb|EHA14035.1| NADH dehydrogenase [Halomonas sp. HAL1]
Length = 432
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 114/450 (25%), Positives = 190/450 (42%), Gaps = 49/450 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + K+ +++L+D++ V+KP+L+EL +G +++
Sbjct: 4 PRIVIVGGGAGGLALATRLGHTLGKR-KRAEIVLLDRNTTHVWKPLLHELATGVLNS--- 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSD---HLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ D ++ F++ + L D + P+ G VL L YD+LV
Sbjct: 60 SMDEVDYRGHSSAHFYRYQRGSLTGVDRQQQVLRLAPVKDEDGAEVLPARELT--YDYLV 117
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----NFGKDSLIRVAVVGC 252
++LG+ PG AE + + A R + R + + + + +VG
Sbjct: 118 MALGSVSNDFGTPGVAEHCHFIDSPQQAKAFQRDMINTFLRYTDPTLRQHTQLTIGIVGG 177
Query: 253 GYSGVELAATV--SERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310
G +GVELAA + + R+ V AI+ ++ ++ +L A
Sbjct: 178 GATGVELAAELFDASRMLNAYGVTAID------------HQHISVHLLEA---------- 215
Query: 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTV 369
R + V Q + + ++D I E Q + + + D+ +W
Sbjct: 216 --APRLLPGLSDRVSQTVKTELEKMGVTVHTDTAIKEAQAHRLITDNGEEIKTDINVWAA 273
Query: 370 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429
G K PP L N + Q E +L RIFALGD ++ +P
Sbjct: 274 GIKA------PPFLTELGLTTNKKNQIEVKRSLQSVDDERIFALGDCASCPMGDEGTVPP 327
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA---VSPSFVEGVTLD 486
AQ A QQA NL + D+PL FR+++ G ++ L R DA + +G+ L+
Sbjct: 328 RAQAAHQQAKLLAKNLVNQLEDKPLQDFRYRDHGSLVSLARYDAVGNLMRSGASKGLFLE 387
Query: 487 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G + A Y + K G+SWL
Sbjct: 388 GWLARQAYASLYRTHQLSIHGPTKTGLSWL 417
>gi|416976175|ref|ZP_11937613.1| NADH dehydrogenase [Burkholderia sp. TJI49]
gi|325520248|gb|EGC99414.1| NADH dehydrogenase [Burkholderia sp. TJI49]
Length = 433
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 156/380 (41%), Gaps = 54/380 (14%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ +V+LVD+ +KP+L+E SG D +A G +F + ++ + +
Sbjct: 25 QAEVVLVDRYPTHFWKPLLHEAASGHRDPASHTIEYAAQAKRHGFRFVQGALQRVDRAAR 84
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
+ G + G +L L YD LVL++G+ VPGAA A P ++ A
Sbjct: 85 IATIGAVHDADGTEILPPREL--RYDDLVLAVGSVTNFFNVPGAARHALPLENVDQAEDF 142
Query: 228 DRKL--------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE------KGIV 273
RK E++ + + + ++V+G G +GVELA + +++ K +V
Sbjct: 143 RRKFLAACTKANHLAEQQPAQRAAPVCISVIGAGATGVELAGALRHAIQQLTTYRFKALV 202
Query: 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 333
A +V + +G ++L A +A + +
Sbjct: 203 SARDVHIRLIESGP--------RILPA-------------------LDARLSDKMHAQLR 235
Query: 334 NIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPL 390
+ D +D + E+ AI + +D+ +W G V P L + L
Sbjct: 236 TLNVDVLTDTRVAEVGADAITTASGERLPSDITIWAAG-------VAGPAILRELDGIAL 288
Query: 391 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAAI 449
N GQA +TL P ++A GD +A S LP AQVA QQA + G +
Sbjct: 289 NRSGQAIVTDTLQTPDDPHVYAFGDCAACPSSGATGFLPPRAQVAHQQAVYLGNAFARRL 348
Query: 450 NDRPLLPFRFQNLGEMMILG 469
+P+ F F++ G ++ LG
Sbjct: 349 AGKPVDGFTFRDAGTVVSLG 368
>gi|421592976|ref|ZP_16037608.1| NADH dehydrogenase [Rhizobium sp. Pop5]
gi|403701206|gb|EJZ18118.1| NADH dehydrogenase [Rhizobium sp. Pop5]
Length = 421
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 179/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 KITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 EVTGVD-----SGAKTVSLRNGMTLGYDTLVLATGATHAYFGRDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R++ +E+E +D+L+ +VG G +GVELA ++E
Sbjct: 124 --LKTLEDATTIRRRVLLAFEKAEMEADPAVRDALLTFTIVGAGPTGVELAGIIAELAHF 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V RV F +
Sbjct: 182 TLPKEFRNIDT--------------------RKTRVVL---VEAGPRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + K + + I + ++W G P R +
Sbjct: 219 QKALEKLGVEVLLGKPVTACSADGVQIGETIVPSRTIVWAAGV------TASPAARWLEA 272
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P + G+ ++ L G P IF +GD++++ +G+P+P A A QQ + + A
Sbjct: 273 PADRAGRVVVEKDLSAPGLPDIFVIGDTASVLRENGKPVPGIAPAAKQQGGYVAKVIRAR 332
Query: 449 INDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
++ +P PF++++ G + +G++ A + ++ L G I LA++ L
Sbjct: 333 LSGKPAPAPFKYRHQGSLATIGKSAAIIDFGRIK---LKGWIAWWIWGLAHIYFLIGTRS 389
Query: 508 RLKVGVSWL 516
R V SWL
Sbjct: 390 RFSVAWSWL 398
>gi|420247666|ref|ZP_14751061.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
gi|398070560|gb|EJL61854.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
Length = 448
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 163/385 (42%), Gaps = 46/385 (11%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
+ + QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L +
Sbjct: 32 EPRAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELVALDRT 91
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
G + G +L E ++EYD LV+++G+ V GA E++ T+ A
Sbjct: 92 AKSIRLGRVLDDDGAELLPER--VLEYDTLVIAIGSTTHFFGVKGAPEYSLALDTVHQAE 149
Query: 226 RVDRKL-----------SELERRNFGKDSL---IRVAVVGCGYSGVELAATVSERLEEKG 271
R ++L E N G S I+VA+VG G +GVEL+A +
Sbjct: 150 RFRKRLIAACMRAEHQAHEPVETNPGTTSTEPRIQVAIVGGGATGVELSAELR------- 202
Query: 272 IVQAINVETTICPTGTPGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESG 330
N + G L L R V +VL R + + V S
Sbjct: 203 -----NTAQVLSAYG--------LHKLDPRHDVGIVL--IEAGPRILPALQERVSTATSE 247
Query: 331 AIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389
+ + + + E+ P ++ + ADL +W G K P V ++L LP
Sbjct: 248 LLQKLGVKLMVGETVAEVAPGVVRTASGKTVRADLTVWAAGIKA--PAVL---SQLDGLP 302
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAA 448
+N GQ E TL +FALGD +A + R +P AQ A QQA F L
Sbjct: 303 VNRLGQLEVRPTLQTMIDDNVFALGDCAACAWPGNERNVPPRAQAAHQQASFLLRALGNR 362
Query: 449 INDRPLLPFRFQNLGEMMILGRNDA 473
+ RPL F +++ G ++ LG A
Sbjct: 363 LEGRPLPEFTYRDFGSLVSLGHFSA 387
>gi|326390069|ref|ZP_08211631.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter ethanolicus JW 200]
gi|392939807|ref|ZP_10305451.1| NADH dehydrogenase, FAD-containing subunit [Thermoanaerobacter
siderophilus SR4]
gi|325993934|gb|EGD52364.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter ethanolicus JW 200]
gi|392291557|gb|EIW00001.1| NADH dehydrogenase, FAD-containing subunit [Thermoanaerobacter
siderophilus SR4]
Length = 596
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/436 (22%), Positives = 177/436 (40%), Gaps = 82/436 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+GG++ A +L + +++D ++ L+D+ L+E+ ++ +
Sbjct: 6 RIVIIGAGYGGVHAA-KLLNKKFKNDSTVEITLIDKKPYHTLLTDLHEVAGSRIEPDSVR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AN V+ D V+ + +G +G YD+L+L
Sbjct: 65 VYLHKIFANKKVKVITDEVEKIDYEKQSVIGKDGEY----------------NYDYLILG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF------GKDSLIRVAVVGC 252
+G+EP +PG E+ F TLE A + + E+ R+ K ++ V G
Sbjct: 109 IGSEPCDFGIPGVFEYGFTVGTLEAAIKTREHIEEMFRKASVESNAEKKRKMLTFVVAGA 168
Query: 253 GYSGVELAATVSE---------RLEEKGI-VQAINVETTICPTGTPGNREAALKVLSARK 302
G++G+E A + E L+ + + + TI P A K L+ +
Sbjct: 169 GFTGIETAGELMEWTKSLCDKYHLDRNDVKIMVVEALNTILPNLNARLAAKAQKFLNRKG 228
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+++ + I +A D YI+ +K + + E
Sbjct: 229 VEVL---------------------TNAPIVEVAKD-----YIV-----LK--DERKIET 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
++WT G + N + + L L R + +T+E + G I+ +GD A
Sbjct: 256 KTLIWTCGVQ--------GNKCVENFGLELGRRCRVQTNEYMQAVGKENIYVIGD-LAYY 306
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
+ G+P+P + A Q A+ A N+ A I PF+ + G M+ +G A +
Sbjct: 307 ELDGKPIPQVVETALQSAETAVHNIVADIKGEEKKPFKPRYHGFMVSIGSRYAVAE---L 363
Query: 481 EGVTLDGPIGHSARKL 496
GV+L G + + + L
Sbjct: 364 MGVSLTGFLAMAMKHL 379
>gi|377808327|ref|YP_004979519.1| NADH dehydrogenase [Burkholderia sp. YI23]
gi|357939524|gb|AET93081.1| NADH dehydrogenase [Burkholderia sp. YI23]
Length = 466
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 180/434 (41%), Gaps = 81/434 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + ++ +V+L+D+ +KP+L+E+ SG++DA A
Sbjct: 38 RIVIVGGGAAGLELATRLGNGPGKR-RRAEVILIDRFPTHFWKPLLHEVASGQIDA---A 93
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI-----VEYDWL 195
D A+ F+ L D G G T ++ + + +D L
Sbjct: 94 SHQIDYAAHAKWNHFRFEQGALSGID----RGRREIVIGETTDIDGRPLLPRRTLAFDTL 149
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSL---IRVAVVGC 252
VL+LG+ +PGA E A T+ D R+ G D++ + V V+G
Sbjct: 150 VLALGSVTNFFSIPGANEHALTLETV-DQAETFRRRLLSSLLRSGHDAVKAPVAVTVIGG 208
Query: 253 GYSGVELAATV---SERLEEKGIVQAINVETTICPTGTPGNR--EAALKVL--------- 298
G +GVELAA + +E L + + ++ P+ R E A +VL
Sbjct: 209 GATGVELAAALRGSAEMLRDYHL-------ASLDPSNDIQIRLLEGAPRVLPALPERIST 261
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
AR V LG VR RV A+ A+ E +
Sbjct: 262 RARDVLTGLGVEVRLGCRVQSVAAN---------------------------AVVTSEGE 294
Query: 359 IFEADLVLWTVGSKPLLPHVEPPNNR-LHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+D+ +W G + PP R L LPLN GQ D L I+A+GD +
Sbjct: 295 ALASDITIWAAGVE------GPPVLRTLEGLPLNRLGQVIVDGQLQAGPDSGIYAMGDCA 348
Query: 418 ALRDSSGRPL-PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
A S G L P AQ A QQA + L ++ R + F +++ G ++ GR AA +
Sbjct: 349 ACAASKGDALVPPRAQAACQQAVYLADALTRRLDGRAVQDFSYRDQGTLISFGRAGAAGA 408
Query: 477 --------PSFVEG 482
P F++G
Sbjct: 409 LMSELLRRPLFIDG 422
>gi|289579305|ref|YP_003477932.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter italicus Ab9]
gi|289529018|gb|ADD03370.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter italicus Ab9]
Length = 596
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 97/436 (22%), Positives = 175/436 (40%), Gaps = 82/436 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+GG++ A +L +++D +++L+D+ L+E+ ++ +
Sbjct: 6 RIVIVGAGYGGVHAA-KLLHKKFKNDSNIEIILIDKKPYHTLLTDLHEVAGSRIEPDSVR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AN V+ D V+ + +G +G YD+L+L
Sbjct: 65 VYLHKIFANKKVEVIIDEVEKIDYEKQSVIGKDGEY----------------NYDYLILG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF------GKDSLIRVAVVGC 252
+G+EP +PG E+ F TLE A + + E+ R+ K ++ V G
Sbjct: 109 IGSEPCDFGIPGVFEYGFTVGTLEAAIKTREHIEEMFRKASVESNAEKKRKMLTFVVAGA 168
Query: 253 GYSGVELAATVSE---------RLEEKGI-VQAINVETTICPTGTPGNREAALKVLSARK 302
G++G+E A + E L+ + + I TI P A K L+ +
Sbjct: 169 GFTGIETAGELMEWTKSLCDKYHLDHNDVKIIVIEALNTILPNLNAKLANKAAKFLAKKG 228
Query: 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
V+++ + I +A D YI+ L+ K E
Sbjct: 229 VEVL---------------------TNAPIVEVAKD-----YIV-LKDGRK------IET 255
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
++WT G + N + + L L R + +T+E + G I+ +GD A
Sbjct: 256 KTLIWTCGVQ--------GNKCVENFGLELGRRSRVQTNEYMQAVGKENIYVIGD-LAYY 306
Query: 421 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 480
+ G+P+P + A Q A+ N+ A I PF+ + G M+ +G A +
Sbjct: 307 ELDGKPIPQIVETALQSAETVVHNIVADIKGGEKQPFKPKYHGFMVSIGSRYAVAE---L 363
Query: 481 EGVTLDGPIGHSARKL 496
GV+L G + + + L
Sbjct: 364 MGVSLTGFLAMAMKHL 379
>gi|443672998|ref|ZP_21138074.1| NADH dehydrogenase [Rhodococcus sp. AW25M09]
gi|443414483|emb|CCQ16412.1| NADH dehydrogenase [Rhodococcus sp. AW25M09]
Length = 474
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 180/425 (42%), Gaps = 83/425 (19%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ K+ R+ ++G GFGGL+ L+ + LV ++ +F+P+LY++ +G +
Sbjct: 7 ESKRHRVVVIGSGFGGLFGVKALKK------ADVDITLVAKTTHHLFQPLLYQVATGILS 60
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
EIAP T V K + + D L ++ + + LLE + +D L
Sbjct: 61 VGEIAP-------TTRVILRKQKNAEVLLGDVLNID--LDTKTVTSKLLERITVTPFDSL 111
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAV 249
+++ GA+ AEFA T++DA + ++ +EL KD L+ V
Sbjct: 112 IVAAGAQQSYFGNDHFAEFAPGMKTIDDALELRGRILGAFEQAELSNDQEEKDRLMTFVV 171
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAI-NVE-------------TTICPTGTPGNREAAL 295
VG G +GVELA ++E L ++ + A N++ + P G R+AA
Sbjct: 172 VGAGPTGVELAGQIAE-LADRTLDGAFRNIDPRDARVILLDAAPAVLPPMGEKLGRKAAE 230
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+ L V++ L V + G +VK+ +
Sbjct: 231 R-LEKLGVEIQLNAMVTDVDNDG---LTVKEKDG-------------------------- 260
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP---LNARGQAETDETLCVKGHPRIFA 412
++ EA +W+ G + P +L D + G+ + L VKGHP +F
Sbjct: 261 STRRIEAQCKVWSAGVQG-----SPLGKQLADQSGSETDRAGRVLVEPDLTVKGHPNVFV 315
Query: 413 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN--DRPL--LPFRFQNLGEMMIL 468
+GD A++D +P AQ A Q A +A + A++ D P PF++ + G M +
Sbjct: 316 IGDLMAVKD-----VPGMAQGAIQGATYAAKLIKASVKGEDDPTQRAPFKYFDKGSMATV 370
Query: 469 GRNDA 473
R +A
Sbjct: 371 SRFNA 375
>gi|404416810|ref|ZP_10998624.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus arlettae
CVD059]
gi|403490818|gb|EJY96349.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus arlettae
CVD059]
Length = 402
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 174/408 (42%), Gaps = 60/408 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D + ++ L+++++ L+E +G +
Sbjct: 3 QDRKKVLVLGAGYAGLQTITKLQKQISAD--QAEITLINKNDYHYEATWLHEASAGTISY 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++ ++ V F K V + N T G I ++D LV
Sbjct: 61 EDLLYPVESVVNQDKVNFVKAEVT------KIDRNARKVETDAG--------IFDFDVLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR----KLSELERRNFGKDSLIRVAVVGC 252
++LG E + + G ++AF + A ++ R K + D + + V G
Sbjct: 107 VALGFESETFGIEGMKDYAFQIENVLTARKLSRHIEDKFANYAASKQKDDKDLAILVGGA 166
Query: 253 GYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
G++GVE +++R+ E K V V+ T EAA K+L +LV +
Sbjct: 167 GFTGVEFLGELADRIPELCNKYGVDQSKVKLTCV--------EAAPKMLPMFSDELV-NH 217
Query: 310 FVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
V + G EF+ P +AA N +++++ E Q EA+ +W
Sbjct: 218 AVSYLEAKGVEFKIGT--------PIVAA--NEKGFVVKVND-----EEQQLEANTSVWA 262
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 425
G + ++L + RG+ T++ L + G+ IF +GD SA + R
Sbjct: 263 AGVR---------GSKLMEESFEGVKRGRIVTNQDLTISGYDNIFVIGDCSAFIPAGEER 313
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
PLP TAQ+A QQ + ++ + +P F + + G + LG ND
Sbjct: 314 PLPTTAQIAMQQGEHTAKSIQNILEGQPTSEFEYVDRGTVCSLGANDG 361
>gi|395234728|ref|ZP_10412949.1| hypothetical protein A936_13699 [Enterobacter sp. Ag1]
gi|394730429|gb|EJF30278.1| hypothetical protein A936_13699 [Enterobacter sp. Ag1]
Length = 400
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 182/420 (43%), Gaps = 74/420 (17%)
Query: 79 KPRICILGGGFGGLYTAL---RLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +I ILG GF G++ AL RL ++ +DD + VL R +P YE EV
Sbjct: 2 QQKILILGAGFAGMWAALSAARLVAMHNRDDIEIAVLAPQPELRV--RPRFYET---EV- 55
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLL-----CP--SDHLGVNGPMACTHGGTVLLESGL 188
A +AP L TGV F K + + C D G + P
Sbjct: 56 ASLVAP-LQPLFDVTGVTFVKGEAQRIDSVNQCVWYRDQQGNSTPR-------------- 100
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIR 246
+YD LVL+ G+ K D++ GAAE AF LE A R+++ +S+L ++ + ++++I
Sbjct: 101 --QYDRLVLATGSNLKRDLIDGAAEHAFDLDQLESALRLEQHISDLAQQPESEARNTVI- 157
Query: 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
V G G++G+E+A + RL + ++ +E +V+ + +
Sbjct: 158 --VCGGGFTGIEMATELPGRL--RAVL----------------GKETNARVIVVERGDKI 197
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
G + R +R V + E G + N+D ++ + +I + ++L
Sbjct: 198 GGRYSRELRDV----IATASEELG----VEWRLNTDVREIDANGIVLADGERIASSTVIL 249
Query: 367 WT-VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSG 424
V + PL + P ++ +G+ D L V+G P IFA GD + A D G
Sbjct: 250 TAGVQASPLTAQINAPRDK--------QGRLHVDAFLRVEGQPAIFATGDVARAETDEQG 301
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 484
T Q A F G+N+ A++ D LP+R N + LG A + + + VT
Sbjct: 302 NLALMTCQHAIMLGRFVGYNVAASLLDVTPLPYRQINYVTCLDLGGWGAVFTEGWEQKVT 361
>gi|312196480|ref|YP_004016541.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. EuI1c]
gi|311227816|gb|ADP80671.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. EuI1c]
Length = 430
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 176/421 (41%), Gaps = 79/421 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI +LGGG+ GL TA+R+ + QV L++ S+RFV + L++L +G+ E+A
Sbjct: 15 RILVLGGGYTGLMTAVRVARR--TRRQGGQVTLLNPSDRFVERLRLHQLATGQ----ELA 68
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDH-LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
R LLA TGV F + + + H + V GP G YD LV +
Sbjct: 69 DLRIPRLLAGTGVTFVRGAAVRIDRAAHTVDVEGPDGPGQLG-----------YDLLVYA 117
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRNFGKD------------ 242
LG+ L VPGAA+ A+ + A R+ +L+EL E G +
Sbjct: 118 LGSAADLGSVPGAADHAYTLNGPAAAGRLADRLAELALPGEDVTVGAETPAGAETPPGQA 177
Query: 243 -SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR 301
S RVA+VG G +G+E+AA ++E +V + PG A
Sbjct: 178 TSAGRVAIVGAGLTGIEMAAEIAETFPALRVV--------LLSRDQPGLMMGAAARAYLY 229
Query: 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361
+ LG VR V + GA+ + + D L P
Sbjct: 230 RALDRLGIEVRA-------GVDVTKVLPGAV-----EVDGD-----LAP---------MA 263
Query: 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
AD V+WT G + P L ++ G+ D+ L + P ++ +GD++A+R
Sbjct: 264 ADAVVWTTGFR------APALAAEAGLAVDGHGRVVVDQALRSETDPAVYVIGDAAAVRQ 317
Query: 422 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 481
G L + Q A A ++ + R PFRF + + + LGR DA + F
Sbjct: 318 PWGT-LHGSCQSGLPTAAHAADSIGRQLRGRAPRPFRFGYIHQPVSLGRRDAVI--QFTH 374
Query: 482 G 482
G
Sbjct: 375 G 375
>gi|403384282|ref|ZP_10926339.1| NADH dehydrogenase-like protein [Kurthia sp. JC30]
Length = 396
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 166/413 (40%), Gaps = 72/413 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GG+ A + V D + +V++V++ L+ L G V +A
Sbjct: 3 KIVILGAGYGGVLAATTVRQYV--DANEAEVIVVNKYPTHQIITELHRLAGGTVSEKAVA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L ++ V+ + +V L++G + YD LV++LG
Sbjct: 61 YDLGKLFRGKDIKIKIATVESFSVDNK-------------SVKLDNGETLSYDALVVALG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFGKDSLIRVAVVGCGYSGVE 258
++ +PG E +F ++EDA + + + G + + + G G +GVE
Sbjct: 108 SKTGFFGIPGLEENSFVLKSVEDANNLREHIIGRIKAYAETGDKADATIVIGGGGLTGVE 167
Query: 259 LAATVSERL----EEKGI------VQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308
L + + + + G+ V+ + I P E A K L+ R V+ + G
Sbjct: 168 LVGEIIDNMPKIAAKYGVAADELDVKLVEAGPRILPVLPQTLIERATKSLADRGVEFLTG 227
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
P +G N+ + K+ K A+ ++WT
Sbjct: 228 L-----------------PVTGVEGNVVSLKDGQK----------------ITANTIVWT 254
Query: 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-----RDSS 423
G P VE L N RG+A ++ L HP +F +GD++A +
Sbjct: 255 -GGVAQYPIVEESG-----LVCN-RGKAVVNDFLQSDSHPDVFVVGDAAAAYAPGANKET 307
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
RP P TAQ A+Q + G+NL+A +N + + F N G + LGR D +
Sbjct: 308 DRPYPPTAQNAWQMGELVGYNLFAYLNGKNMKGFNPVNSGTLASLGRKDGVAT 360
>gi|390577027|ref|ZP_10257067.1| NADH dehydrogenase [Burkholderia terrae BS001]
gi|389931005|gb|EIM93093.1| NADH dehydrogenase [Burkholderia terrae BS001]
Length = 448
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 163/385 (42%), Gaps = 46/385 (11%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
+ + QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L +
Sbjct: 32 EPRAQVALVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELVALDRT 91
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
G + G +L E ++EYD LV+++G+ V GA E++ T+ A
Sbjct: 92 AKSIRLGRVLDDDGAELLPER--VLEYDTLVIAIGSTTHFFGVKGAPEYSLALDTVHQAE 149
Query: 226 RVDRKL-----------SELERRNFGKDSL---IRVAVVGCGYSGVELAATVSERLEEKG 271
R ++L E N G S I+VA+VG G +GVEL+A +
Sbjct: 150 RFRKRLIAACMRAEHQAHEPVETNPGTTSTEPRIQVAIVGGGATGVELSAELR------- 202
Query: 272 IVQAINVETTICPTGTPGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESG 330
N + G L L R V +VL R + + V S
Sbjct: 203 -----NTAQVLSAYG--------LHKLDPRHDVGIVL--IEAGPRILPALQERVSTATSE 247
Query: 331 AIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389
+ + + + E+ P ++ + ADL +W G K P V ++L LP
Sbjct: 248 LLQKLGVKLMVGETVAEVAPGVVRTASGKTVRADLTVWAAGIKA--PAVL---SQLDGLP 302
Query: 390 LNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAA 448
+N GQ E TL +FALGD +A + R +P AQ A QQA F L
Sbjct: 303 VNRLGQLEVRPTLQTMIDDNVFALGDCAACAWPGNERNVPPRAQAAHQQASFLLRALGNR 362
Query: 449 INDRPLLPFRFQNLGEMMILGRNDA 473
+ RPL F +++ G ++ LG A
Sbjct: 363 LEGRPLPEFTYRDFGSLVSLGHFSA 387
>gi|395206353|ref|ZP_10396919.1| putative NADH dehydrogenase [Propionibacterium humerusii P08]
gi|422441873|ref|ZP_16518682.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA3]
gi|422473198|ref|ZP_16549679.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA2]
gi|422573484|ref|ZP_16649046.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL044PA1]
gi|313835296|gb|EFS73010.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA2]
gi|314928246|gb|EFS92077.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL044PA1]
gi|314970077|gb|EFT14175.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA3]
gi|328905945|gb|EGG25721.1| putative NADH dehydrogenase [Propionibacterium humerusii P08]
Length = 460
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 154/370 (41%), Gaps = 44/370 (11%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R A G R + G+
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAAQNGPGTHFRRASVT------GI 104
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DR 229
+ T V +++G + YD+LVLS G PGAAE ++ T + R D
Sbjct: 105 D-----TENRIVEVDNGDPLPYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSLRARDA 159
Query: 230 KLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPG 289
+ LE + +D + V +VG G +GVE+A T++E + G P
Sbjct: 160 IFTYLEDLDTQRDKTVDVIIVGGGPTGVEMAGTLAE----------------MKSIGIP- 202
Query: 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
A +S +V + L + + F+ +++ + D + I E++
Sbjct: 203 ---AIFPNVSTDRVHVTLVEMADHL--LMPFDPALRHYTRRQLQKRGVDVRTKTAIAEVR 257
Query: 350 -PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHP 408
++ + Q AD+V+W G + H N G+ T+ TL V G
Sbjct: 258 DDSVLLKDGQTLPADMVIWAAG---VGAHESVAN---WGFEQGHGGRIATNGTLLVNGQD 311
Query: 409 RIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
R+FA+GD + ++ P P AQ A Q + + PL F + + G M +
Sbjct: 312 RVFAVGDGAI---NTEDPTPQLAQPAIQGGECVARQIIHLELGEPLEKFEYNDKGTMATI 368
Query: 469 GRNDAAVSPS 478
GRN A V S
Sbjct: 369 GRNSAVVQLS 378
>gi|359725878|ref|ZP_09264574.1| NADH dehydrogenase [Leptospira weilii str. 2006001855]
gi|417781937|ref|ZP_12429672.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira weilii
str. 2006001853]
gi|410777922|gb|EKR62565.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira weilii
str. 2006001853]
Length = 423
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 100/453 (22%), Positives = 184/453 (40%), Gaps = 73/453 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + + +
Sbjct: 6 KRKIVVIGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLSPAD 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDWLVL 197
IA L+ +R+ + V G T + + YD+L+L
Sbjct: 61 IAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSINYDYLIL 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKD-----SLIRVAVVG 251
S GA+ ++ L+DA ++ KL E+ D +L+ ++G
Sbjct: 107 SAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKLLISFEKAELSGDPEVVKALLNYVIIG 166
Query: 252 CGYSGVELAATVSE------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
G +GVELA +++E R E I A++ T I EAA ++L L
Sbjct: 167 GGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLI---------EAAPRLLMTFDPSL 217
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
GEF + K+ ES + + + ++++ LE ++ V
Sbjct: 218 ------------GEF--TKKRLESRGVEVLTGTR-----VIDINERGVQLEGKMIPTGTV 258
Query: 366 LWTVGSKPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
+W G + N L L+ G+ DE V+GHP +F +GD +
Sbjct: 259 IWAAGVQA--------NGIASTLGVTLDRGGRVIVDEFCNVEGHPEVFVIGDIANYSKGL 310
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGV 483
RPLP + VA QQ + + + ++ FR+ + G M +GR DA ++
Sbjct: 311 ERPLPGVSPVAMQQGRYVAALIQGDLRNKKRKSFRYVDKGSMATIGRTDAVAQVGVLK-- 368
Query: 484 TLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ G G A +L ++++ + ++W+
Sbjct: 369 -MKGLFGWLAWLFVHLFYQVGFKNKVTILITWV 400
>gi|433679660|ref|ZP_20511368.1| NADH dehydrogenase [Xanthomonas translucens pv. translucens DSM
18974]
gi|430815229|emb|CCP41967.1| NADH dehydrogenase [Xanthomonas translucens pv. translucens DSM
18974]
Length = 435
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 166/404 (41%), Gaps = 55/404 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ++GGGF GL+ L K P ++ L+D+ +F+P+LY++ + + + +
Sbjct: 7 PHLIVVGGGFAGLWATRALA-------KAPLRITLIDRRNHHLFQPLLYQVATAGLSSPD 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L +D V + + L ++ H L G ++YD+L+++
Sbjct: 60 IAAPLRQILRK------QDNVAVRL-GEVLRLDKQARQVH-----LAGGETLDYDYLLVA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDR------KLSELERRNFGKDSLIRVAVVGC 252
GA A A TL+DA + R + +E E + + + A+VG
Sbjct: 108 TGATHAYFGHDEWARHAPGLKTLDDALHLRRHLLLAFERAEAESDPAARAAWLSFAIVGG 167
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVELA T++E I T +A ++++ A
Sbjct: 168 GPTGVELAGTLAE----------IARHTLKHEFRRIDPAQAKVRLIEA------------ 205
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
R + F + + + D + + ++ + L S A V+W G
Sbjct: 206 GPRVLASFPERLSAKAQKQLEKLGVDVLTGVPVADIDASGYRLGSTFVPARTVVWAAGV- 264
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P R D+PL+ G+ + L + GHP +F GD +AL+ + G+P+P A
Sbjct: 265 -----AASPLGRTLDVPLDRSGRVQVQPDLSIPGHPEVFVAGDLAALQQADGKPVPGVAP 319
Query: 433 VAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAV 475
A Q NL + P PFR+ + G + +GR A V
Sbjct: 320 AAKQMGRHVAENLAKRLRGEPGDAPFRYADYGNLATIGRMAAIV 363
>gi|310793149|gb|EFQ28610.1| hypothetical protein GLRG_03754 [Glomerella graminicola M1.001]
Length = 516
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 133/506 (26%), Positives = 209/506 (41%), Gaps = 87/506 (17%)
Query: 60 VVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119
VV + ++S + T ++K+ R+ +LG G+ G A L D KK + +L+
Sbjct: 37 VVNYRNSTSSNSPT--ERKRERVVVLGSGWAGYAFAREL------DPKKFERILISPRSY 88
Query: 120 FVFKPMLYELLSGEVD--------AWEIAPRFADLLANTGVQFFKD--RVKLLCPSDHLG 169
FVF P+L G ++ W F + A+ V F K RV+ + D
Sbjct: 89 FVFTPLLASTSVGTLEFRSILEPVRWLNLDSFYEAWAD-DVDFSKKLVRVEKVTSQDATS 147
Query: 170 VNGPMACTH--GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
P H G V+ V YD LV+S+GA + + G E+A + DA +
Sbjct: 148 RTLPERQLHRSKGEVI-----DVPYDKLVISVGAYSQTFGIEGVKEYANFLRDIGDARSI 202
Query: 228 D-RKLSELERRNF------GKDSLIRVAVVGCGYSGVELAATVSERLEEK------GIVQ 274
R L E+ ++ + ++ AVVG G +G+E AA + + + + +++
Sbjct: 203 RLRVLQCFEKADWPTTTDEQRRKMLHFAVVGGGPTGIEFAAELHDLIHDDLSKLYPHLME 262
Query: 275 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 334
+++ TI + A KVL + QL Y RR G +K +
Sbjct: 263 FVSI--TIY--------DIAPKVLPMFEQQLA-SYAEDLFRRQG-----IKVKTQHHLQR 306
Query: 335 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNR-------- 384
I +D++ L+L+ IK + A LV+W+ G PL+ + R
Sbjct: 307 IRSDEDDTYNTLKLK--IKEYGDEEVGAGLVVWSTGLMQNPLIQKILKKELRNPASAVEG 364
Query: 385 -----LHDLPLNARGQAETDETLCVKGH---------PRIFALGDSSALRDSSGRPLPAT 430
+ L G TD L V+ P +++LGD S L + LPAT
Sbjct: 365 KRSEIVKVLKAERSGGIITDSHLRVRLDDPDNEKAVLPDVYSLGDCSVLETGT---LPAT 421
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 490
AQVA QQA + L A +DR PF+F+NLG M LG A S E L G
Sbjct: 422 AQVASQQAVYLAKMLNRAADDRGSKPFKFRNLGTMAYLGSWRAIHQSSADE---LKGRAA 478
Query: 491 HSARKLAYLIRLPTDEHRLKVGVSWL 516
+ AYL + + +++ V W
Sbjct: 479 WILWRCAYLTKSMSIRNKILVPFYWF 504
>gi|349699840|ref|ZP_08901469.1| NADH dehydrogenase [Gluconacetobacter europaeus LMG 18494]
Length = 426
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 147/362 (40%), Gaps = 32/362 (8%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ ++ LVD+S V+KPML+ +G F + +F+ + +
Sbjct: 32 RAEITLVDKSFAHVWKPMLHCFAAGTAANENDRISFLSQASRHHFEFWPGEIAGMDRKAK 91
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
P+ G +L E L EYD LVLS+G+ PG AE L DA
Sbjct: 92 TITLAPVVEPTGEVILDERKL--EYDALVLSIGSRANDFGTPGVAEHCLFIDNLVDANGF 149
Query: 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT 287
+ + + FG + + +A+VG G +G +LAA + + L+ + +
Sbjct: 150 NDRFRAELLKAFGNNEQLDIAIVGGGATGTQLAAELHKALD-------------LASLYS 196
Query: 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347
G + L + +L F + + E K S + + + ++L+
Sbjct: 197 FGKKPPKLNITLLEAGPRILPAFPEAVSAAAQKELE-KIGVSVKTSAMVSGADEKGFMLK 255
Query: 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 407
+ A L +W G K P V + DL L+ GQ E TL +
Sbjct: 256 --------DGTRIPATLRVWAAGVKA--PDV---TRKFGDLKLSRSGQLEVRPTLQLVED 302
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
IFA+GD + + D +P+ TAQ A QQA + A IN RPL PF F N G ++
Sbjct: 303 DSIFAMGDCAFIAD---KPVAPTAQAARQQAHHLARCMPAWINGRPLKPFAFHNKGAVVA 359
Query: 468 LG 469
LG
Sbjct: 360 LG 361
>gi|419963369|ref|ZP_14479344.1| NADH dehydrogenase [Rhodococcus opacus M213]
gi|414571218|gb|EKT81936.1| NADH dehydrogenase [Rhodococcus opacus M213]
Length = 460
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 112/428 (26%), Positives = 176/428 (41%), Gaps = 75/428 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + R+ I+G GFGGL+ A L V++VD++ +F+P+LY++ +G +
Sbjct: 8 EARHRVVIIGSGFGGLFAAKALRR------ADVDVVIVDRTSHHLFQPLLYQVATGILSE 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIAP +L N V L +D + TH G YD L+
Sbjct: 62 GEIAPSTRMVLKNQS----NASVILGDVTDIDLATRRIMSTHQGKTTTTG-----YDSLI 112
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDS-----LIRVAVV 250
+S GA AE A +++DA + R L ER D+ L+ VV
Sbjct: 113 VSAGARQSYFGNDHFAEHAPGMKSIDDALELRGRILGAFERAELSTDAEERARLLTFVVV 172
Query: 251 GCGYSGVELAATVSERLEEKGIVQAI-NVETTICPTGTPGNREAALKVLSARKVQL---- 305
G G +GVE+A ++E L + +V A N +T R+A + +L A L
Sbjct: 173 GAGPTGVEMAGQIAE-LAHRTLVGAYRNFDT----------RDARIVLLDAASAVLPPFG 221
Query: 306 -VLG-YFVRCIRRVGEFEASVKQPESGAIPNIAAD----KNSDKYILELQPAIKGLESQI 359
LG + R+G V+ + ++ AD K+ + ++ A K
Sbjct: 222 DRLGSTAAERLERIG-----VEVRLGATVTDVDADGVTIKDGRGETVRIESACK------ 270
Query: 360 FEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
+W+ G + PL + + L+ G+ E L V GH F +GD
Sbjct: 271 ------VWSAGVEASPLARQLAEQSG----AELDRAGRIAVREDLTVPGHREAFVIGDMM 320
Query: 418 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL----LPFRFQNLGEMMILGRNDA 473
A RD LP AQVA Q +A + A R +PFR+++ G M + R +A
Sbjct: 321 A-RDR----LPGVAQVAIQGGRYAARQIAADAGRRATSPDRVPFRYRDKGSMATISRFNA 375
Query: 474 AVSPSFVE 481
V +E
Sbjct: 376 VVKVGGIE 383
>gi|414076327|ref|YP_006995645.1| NADH dehydrogenase FAD-containing subunit [Anabaena sp. 90]
gi|413969743|gb|AFW93832.1| NADH dehydrogenase FAD-containing subunit [Anabaena sp. 90]
Length = 452
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 98/421 (23%), Positives = 178/421 (42%), Gaps = 58/421 (13%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
Q+ L+D+ +F+P+LY++ +G + +I+ +L+ + K+L
Sbjct: 35 QITLIDKRNFHLFQPLLYQVATGSLSPADISSPLRSVLSKS------KNTKVLLGE---- 84
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
VN V ES V YD L+++ GA+ EFA T+EDA + R
Sbjct: 85 VNDIDTTAQNVMVGAES---VPYDTLIVATGAKHSYFGKDNWEEFAPGLKTVEDAIEMRR 141
Query: 230 KL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI-NVETTI 282
++ +E E + +L+ +VG G +GVELA ++E L K + + N++T
Sbjct: 142 RIFSAFEAAESESDPVKRQALLTFVIVGGGPTGVELAGAIAE-LATKTLTEDFRNIDT-- 198
Query: 283 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 342
A +VL + +L F + E AS+K + D +
Sbjct: 199 ----------AETRVLLLEGLDRILPPFAPELSHTAE--ASLKA--------LGVDVQTK 238
Query: 343 KYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQ 395
+ ++ I +G + + A VLW G K P L + + + G+
Sbjct: 239 TLVTHIENDIVTIKQGDDVKEIAAKTVLWAAGVK-----ASPMGKVLTEKTGVESDRAGR 293
Query: 396 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 455
+ L +KG P IF +GD + + +PLP A VA Q+ ++ + + L
Sbjct: 294 VMVEPDLSIKGFPNIFVVGDLANFAHQNDKPLPGVAPVAMQEGEYVAKLIQKRLKGETLR 353
Query: 456 PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
PF++ + G + ++G++ A V F++ L G ++ L +++L V + W
Sbjct: 354 PFKYVDRGSLAMIGQHAAVVDLGFIK---LRGFFAWFVWLFIHIYFLIEFDNKLVVMIQW 410
Query: 516 L 516
L
Sbjct: 411 L 411
>gi|77362039|ref|YP_341613.1| respiratory NADH dehydrogenase II [Pseudoalteromonas haloplanktis
TAC125]
gi|76876950|emb|CAI89167.1| Respiratory NADH dehydrogenase II [Pseudoalteromonas haloplanktis
TAC125]
Length = 434
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 161/383 (42%), Gaps = 63/383 (16%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLL--ANTGVQFFKDRVKLLCP 164
K +LL+D++ ++KP+L+E+ +G +D P ++ A+ ++ ++ C
Sbjct: 32 KHADILLIDKNRTHIWKPLLHEVATGSID-----PDLDGVVYSAHAAKHHYRFQLGTFCN 86
Query: 165 SDHLGVN---GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTL 221
D P+ G T+L E V YD LV+++G+ PG E + +
Sbjct: 87 IDQSNKTITLAPLYDELGHTILPERN--VRYDHLVIAIGSVSNDFNTPGIKEHCYFLDSN 144
Query: 222 EDACRVDRKL----SELERRNFGKDSLIRVAVVGCGYSGVELAA---TVSERLEEKGIVQ 274
+ A R L + L + + + SL +A+VG G +GVEL+A VSE L+ G+
Sbjct: 145 QQAERFQHSLLDSFTRLHQDDNQQQSL-NIAIVGGGATGVELSAELYHVSELLKLYGLTN 203
Query: 275 AINVETTIC-----PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 329
+ I P P E +SA++ L LG VR +V E E
Sbjct: 204 MSSKRLHIHLIEAGPRILPALPERI--AVSAKRELLKLGVNVREQTQVKE------ATEH 255
Query: 330 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 387
G I D++I AD++LW G V+ P+ L
Sbjct: 256 GFIT------KDDEHI---------------NADIMLWAAG-------VKAPDFIKDLGI 287
Query: 388 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447
L Q + ++ L IF LGD A ++G+ +P AQ A Q A NL A
Sbjct: 288 FELTRSNQIQVNQFLQSTVDDSIFVLGDCCAFTQANGKQVPPRAQSAHQMAQCVEKNLIA 347
Query: 448 AINDRPLLPFRFQNLGEMMILGR 470
+ +PL F++ + G ++ L R
Sbjct: 348 TLKQQPLSGFKYSDHGSLVNLSR 370
>gi|377808276|ref|YP_004979468.1| NADH dehydrogenase [Burkholderia sp. YI23]
gi|357939473|gb|AET93030.1| NADH dehydrogenase [Burkholderia sp. YI23]
Length = 435
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 190/415 (45%), Gaps = 40/415 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD--AWE 138
RI I+GGG GGL A RL + + + + V LVD+S V+KP+L+E+ +G +D A E
Sbjct: 3 RIVIVGGGAGGLELATRLGNRLGKAGR-AHVTLVDRSAVHVWKPLLHEVAAGSLDTHAHE 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +A G F + L GPM + +EYD LVL+
Sbjct: 62 IA--YAAHSHWNGFTFVHGEMTGLDRESRRLKIGPMFEFEDSDAEVLPPRDLEYDTLVLA 119
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFG---KDSLIRVAVVGCG 253
LG+ VPGA E A TLE A R+ ++L + L +R G D + +A++G G
Sbjct: 120 LGSRTHFFGVPGAEEHAIALDTLEQAERLRKRLLQVCLRKRAQGVSDADEAVDIAIIGAG 179
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+GVELAA + R+E+ + + +P AA+++ + VL
Sbjct: 180 ATGVELAAEL-RRMEQ-------TLRQFRLLSESP---RAAMRITLLERGDRVLPALA-- 226
Query: 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSK 372
RRV + ++ + NI+ ++ + ++P +++ AD+ +W G K
Sbjct: 227 -RRVSDTTRAILEK-----MNISVRVSTS--VTRVRPDSVEIAGGASIPADITIWAAGIK 278
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P V L L +N Q + +L + IFALGD ++ ++ +P AQ
Sbjct: 279 A--PAVLAS---LDGLAVNHVNQIKVASSLQSETDADIFALGDCASCAWTADVLVPPRAQ 333
Query: 433 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 487
A QQA F L A I R + F +++ G ++ LG A S V G+T G
Sbjct: 334 AAHQQAMFLCKALSARIEGRDVGAFTYKDHGSLVSLGSPTAVGS---VAGMTSSG 385
>gi|186476585|ref|YP_001858055.1| NADH dehydrogenase [Burkholderia phymatum STM815]
gi|184193044|gb|ACC71009.1| NADH dehydrogenase [Burkholderia phymatum STM815]
Length = 450
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 153/378 (40%), Gaps = 55/378 (14%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV+LVD+S +KP+L+E SG++D ++A G F + ++ L + H
Sbjct: 46 QVVLVDRSPTHFWKPLLHEAASGQIDPATHQLQYAVQARRHGFAFEQGALQSLDRAQHRI 105
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
G VL +E+D LVL+LG+ V GAA+ A P ++ A R
Sbjct: 106 TISATRDEDGRDVL--PARHIEFDTLVLALGSVTNYFGVKGAADHALPLESVTHAESFRR 163
Query: 230 KL------SELERRNFGKDSL--IRVAVVGCGYSGVELAATVSE--RLEEKGIVQAINVE 279
KL + RR G + + + ++G G +GVELAA + + RL + + A++ E
Sbjct: 164 KLLDACTRANHVRRVSGAQQVQPVSINIIGAGATGVELAAALRDSIRLMHRYSLFALDPE 223
Query: 280 TTICPTGTPGNREAALKVLS------ARKVQLVLGYFVRCIRRVGEFEASVKQPESGA-I 332
C G + L LS AR++ LG V RV E A G +
Sbjct: 224 RDFCIRLIEGT-DRVLPALSQRVSMRARRMLSGLGVDVLTTTRVTEVRADAVWTHDGQQL 282
Query: 333 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD-LPLN 391
PN D+ +WT G PP R+ D + +N
Sbjct: 283 PN----------------------------DIAIWTAGI------AGPPVLRVLDGIEVN 308
Query: 392 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451
Q TL +FALGD +A + L AQVA QQA F L +
Sbjct: 309 RNAQVLVSRTLQTTTDENVFALGDCAACPSHADGFLAPRAQVAHQQATFLARALKCRVGG 368
Query: 452 RPLLPFRFQNLGEMMILG 469
L F +++ G ++ G
Sbjct: 369 EALPEFTYRDAGTLVGFG 386
>gi|119513154|ref|ZP_01632204.1| hypothetical protein N9414_12238 [Nodularia spumigena CCY9414]
gi|119462204|gb|EAW43191.1| hypothetical protein N9414_12238 [Nodularia spumigena CCY9414]
Length = 421
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 90/399 (22%), Positives = 165/399 (41%), Gaps = 47/399 (11%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+G GFGGL TA L + V L+D+ F P+LY++ + +++
Sbjct: 2 QTPRIVIVGAGFGGLQTAQSLA------NSGADVCLIDRHNYHTFVPLLYQVATSQLE-- 53
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
P + T ++ F + P ++ + YD+LVL
Sbjct: 54 ---PEYIAYPIRTIIRRFSGKRHQHKPKTRFLWAEVQRIDFKAQIVKTDRCAIAYDFLVL 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIR-----VAVVG 251
+ G++ + V GA+E+AF TL +A ++ R L+ LE + D IR +VG
Sbjct: 111 ATGSKTQYLGVTGASEYAFSLRTLAEAIKLRHRILACLELASQESDPEIRQQLLTFTIVG 170
Query: 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311
G +GVE+A + E L G L ++++L++
Sbjct: 171 GGATGVEIAGALIEMLR--------------------GKFRRDYPTLDLQQLRLIV--IQ 208
Query: 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVG 370
R + E + + + + + ++ + ++ ++I V+WT G
Sbjct: 209 SGDRLLAELPKKLGVYTYKRLTQLGVEVYLQTRVSQVTKESVHLQNNEIIPTATVIWTAG 268
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430
+ P E P ++ +G+ TL + P ++A+GD + + + +G+PL
Sbjct: 269 LEANSP--ETPE----EISTAKKGKLSVHPTLQLLEQPNVYAIGDLAYI-EQNGKPLAGV 321
Query: 431 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
A VA QQ N+ + + PF + N G + I+G
Sbjct: 322 APVALQQGVTVARNIQQQLRGKSPKPFSYFNKGRLAIIG 360
>gi|440747656|ref|ZP_20926912.1| NADH dehydrogenase [Mariniradius saccharolyticus AK6]
gi|436483832|gb|ELP39860.1| NADH dehydrogenase [Mariniradius saccharolyticus AK6]
Length = 417
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 173/434 (39%), Gaps = 84/434 (19%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
+K QV+L+D++ +F+P+LY++ + + ++ L T F+ +
Sbjct: 8 NKAYQVVLLDKNNYHMFQPLLYQVATAALSPSAVSFPLRRLFHKTDNVIFR-----MAVV 62
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ + T+ GT+ YD LVLS GA +F P T +A
Sbjct: 63 REIDKSAKTILTNLGTL--------TYDMLVLSQGANTNYFGNQNIKKFCAPMKTTSEAL 114
Query: 226 RVDRKL-SELERR----NFG-KDSLIRVAVVGCGYSGVELAATVSERLE----------- 268
+ K+ S ER N G + ++ V +VG G +GVELA +++E
Sbjct: 115 YIRNKIISNYERAVNIANPGERKPIMNVVIVGGGATGVELAGSIAELRNNVLPKDYPQLS 174
Query: 269 -EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 327
E V I ++ T +RE AL+ L V+++L V
Sbjct: 175 FENMRVILIEASGSLLNGLTQKSREKALEYLQKLGVEVMLNTMV---------------- 218
Query: 328 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP-LLPHVE----PPN 382
++ D ++++L+ E E +LW G K L VE PN
Sbjct: 219 -----------EDYDGFVVKLK------EKDPIETLTLLWAAGIKANSLIGVEEDQMAPN 261
Query: 383 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFA 441
RL DE C+KG I+ LGD + + + P AQVA QQ+
Sbjct: 262 GRLL-----------VDEFNCLKGEKDIYVLGDQCLQVEEKFPKGHPQVAQVAIQQSKNL 310
Query: 442 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 501
NL + +P PFR+ +LG M +G+ A V F V+ G +L+
Sbjct: 311 AKNLLGDLKQKPWKPFRYNDLGSMATVGKKMAVVDLPF---VSFQGFFAWFVWLFVHLMA 367
Query: 502 LPTDEHRLKVGVSW 515
+ +++L V ++W
Sbjct: 368 ILGVKNKLMVFITW 381
>gi|319949031|ref|ZP_08023128.1| NADH dehydrogenase [Dietzia cinnamea P4]
gi|319437319|gb|EFV92342.1| NADH dehydrogenase [Dietzia cinnamea P4]
Length = 474
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 116/489 (23%), Positives = 190/489 (38%), Gaps = 90/489 (18%)
Query: 71 TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELL 130
T T P ++ R+ I+G GFGGL+ A +LE V LV ++ +F+P+LY++
Sbjct: 10 TATAPAGRRHRVVIIGSGFGGLFAAQQLEK------ADVDVTLVARTGHHLFQPLLYQVA 63
Query: 131 SGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
+G + EIAP +L + K+ +L D + V G + + +
Sbjct: 64 TGILSVGEIAPPTRLILRDQ-----KNATVVLGDVDRIDVAAKKLHASAGHIDFD----L 114
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-----------SELERRNF 239
EYD L+++ GA +A T++DA + ++ E ERR
Sbjct: 115 EYDSLIVAAGANQSYFGNDHFERWAPGMKTVDDALELRSRILGCFEQAEVIDDEEERRR- 173
Query: 240 GKDSLIRVAVVGCGYSGVELAATVSERLEE------------KGIVQAINVETTICPTGT 287
L+ +VG G +GVE+A V+E + V ++ + P
Sbjct: 174 ----LLTFVIVGAGPTGVEMAGQVAELAQHTLRNSFRRIDPASARVILLDAAPAVLPPFG 229
Query: 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347
AA L V++ L V + G VK P+ G++ I
Sbjct: 230 NNLGNAARARLEKMGVEIQLNAMVTNVDYQG---IEVKDPD-GSVRRI------------ 273
Query: 348 LQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 405
+A +W+ G K PL + D ++ G+ ++ L +
Sbjct: 274 -------------DASCKIWSAGVKASPLGKQLADQT----DAEIDRAGRVLVNKDLSLP 316
Query: 406 GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND----RPLLPFRFQN 461
GHP IF +GD +L + LP AQVA Q +A + A + PF++ +
Sbjct: 317 GHPEIFVVGDMMSLDN-----LPGVAQVAIQGGKYAAKQIIAEVEKGRTPAERKPFKYFD 371
Query: 462 LGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 521
G M + R A V +E + LAYLI ++R+ SW +
Sbjct: 372 KGSMATVSRYSAVVKMGPIEISGFIAWVMWLVVHLAYLIGF---KNRITTMFSWGMQMGG 428
Query: 522 DSVALLQST 530
D + L ST
Sbjct: 429 DHRSQLTST 437
>gi|311108718|ref|YP_003981571.1| NADH dehydrogenase [Achromobacter xylosoxidans A8]
gi|310763407|gb|ADP18856.1| NADH dehydrogenase [Achromobacter xylosoxidans A8]
Length = 438
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 162/385 (42%), Gaps = 57/385 (14%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ + LVD ++KP L+E +G +D + + L G F + R++ +
Sbjct: 34 RQHITLVDSRPFHIWKPSLHEAAAGTLDIHQEGLSYLMLAHMNGFSFAQGRLEQVDREQR 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
+ G VL L YD LVL++G+ PGAAE A + E+A +
Sbjct: 94 RITLDAVNDAQGQEVLPRREL--AYDTLVLAMGSTSNFFNTPGAAEHAVTLDSTENAEQF 151
Query: 228 DRKLSELERRNFGKDSLIR-------VAVVGCGYSGVELAATVSERLEEKGIVQA----- 275
+L+ L+ + +R + +VG G +GVELA E +E +V A
Sbjct: 152 --RLTMLKAMALVDQAKVRNPSARLDLVIVGGGATGVELAV---ELVEASHVVSAYGLPN 206
Query: 276 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335
E + T E A ++LSA ++ + R EAS + + +
Sbjct: 207 FQAERDLAITLV----EGAPRILSALPEKISVAATKRLTELGIRVEASCR------VSEV 256
Query: 336 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK-PLLPHVEPPNNRLHDL--PLNA 392
AD ++K + + F A L +W G + P L L DL PLN
Sbjct: 257 TAD------------SVKTADGREFPAQLCMWAAGIQGPAL---------LADLGLPLNK 295
Query: 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND- 451
GQ E +E L P I ALGD A GR +PA AQ A Q+AD+ L A +
Sbjct: 296 VGQLEVNERLET-ADPHILALGDCCAAPWRDGRSVPARAQAAHQEADYLAKKLTARLRHA 354
Query: 452 -RPLLPFRFQNLGEMMILGRNDAAV 475
P P+ +++ G ++ LG+ DA V
Sbjct: 355 AEPTAPYVYEDHGSLVSLGQ-DAGV 378
>gi|313884487|ref|ZP_07818248.1| pyridine nucleotide-disulfide oxidoreductase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620271|gb|EFR31699.1| pyridine nucleotide-disulfide oxidoreductase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 402
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 167/407 (41%), Gaps = 70/407 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I +LG G+ GL T + L+ + + LVD ++ ++E+ +G VD +I+
Sbjct: 3 EIVVLGAGYAGLKTVVSLQ----KKSGDFHITLVDMNDYHCEATEIHEVAAGSVDRDKIS 58
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD++ + V+F +D+V + + V L++ ++YD+LV++LG
Sbjct: 59 YPIADVIHSNKVKFIQDQVTHIDKDQQV-------------VTLKAQGQIKYDYLVVALG 105
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-SLIRVAVVGCGYSGVE 258
+ + GA E A ++ A V + L ++ KD +++ + G G++G+E
Sbjct: 106 FVSETFGIKGAMENALQMVNIDTAEAVHNHILDRMKAYQTTKDPDDLKLVICGAGFTGIE 165
Query: 259 LA-ATVSERLEEKGI-------VQAINVETT--ICPTGTPGNREAALKVLSARKVQLVLG 308
LA A V ER I +Q I VE I P A+ +L VQL LG
Sbjct: 166 LAGAFVDERARYAQIAGVDPKEIQIICVEAAPKILPMFKEEMANYAIDLLDKLDVQLKLG 225
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
++ I+ ++ K E LES ++WT
Sbjct: 226 CMIKEIQPGKVLYSTSKDSEE-------------------------LES--ITTSTIVWT 258
Query: 369 VG--SKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRD-SSG 424
G P++ D AR G+ + L H ++ +GD +A D SS
Sbjct: 259 TGVSGSPVME----------DSGFKARRGRVIVADDLRDPDHDNVYIIGDVAAFMDKSSD 308
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 471
RP P TAQ+A + NL + + F F++ G + +G
Sbjct: 309 RPFPTTAQIAIAMGEHVAKNLDHQLQGQATENFSFKSAGTVASVGNT 355
>gi|440731632|ref|ZP_20911628.1| NADH dehydrogenase [Xanthomonas translucens DAR61454]
gi|440371512|gb|ELQ08353.1| NADH dehydrogenase [Xanthomonas translucens DAR61454]
Length = 430
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 94/404 (23%), Positives = 166/404 (41%), Gaps = 55/404 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ++GGGF GL+ L K P ++ ++D+ +F+P+LY++ + + + +
Sbjct: 2 PHLIVVGGGFAGLWATRALA-------KAPLRITVIDRRNHHLFQPLLYQVATAGLSSPD 54
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L +D V + + L ++ H L G ++YD+L+++
Sbjct: 55 IAAPLRQILRK------QDNVAVRL-GEVLRLDKQARQVH-----LAGGETLDYDYLLVA 102
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDR------KLSELERRNFGKDSLIRVAVVGC 252
GA A A TL+DA + R + +E E + + + A+VG
Sbjct: 103 TGATHAYFGHDEWARHAPGLKTLDDALHLRRHLLLAFERAEAESDPAARAAWLSFAIVGG 162
Query: 253 GYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G +GVELA T++E I T +A ++++ A
Sbjct: 163 GLTGVELAGTLAE----------IARHTLKHEFRRIDPAQAKVRLIEAGP---------- 202
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
R + F + + + D + + ++ + L S A V+W G
Sbjct: 203 --RVLASFPERLSAKAQKQLEKLGVDVLTGVPVADIDASGYRLGSTFVPARTVVWAAGV- 259
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P R D+PL+ G+ + L + GHP +F GD +AL+ + G+P+P A
Sbjct: 260 -----AASPLGRTLDVPLDRSGRVQVQPDLSIPGHPEVFVAGDLAALQQADGKPVPGVAP 314
Query: 433 VAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAV 475
A Q NL + P PFR+ + G + +GR A V
Sbjct: 315 AAKQMGRHVAGNLAKRLRGEPGDAPFRYADYGNLATIGRMAAIV 358
>gi|134095688|ref|YP_001100763.1| respiratory NADH dehydrogenase 2; cupric reductase [Herminiimonas
arsenicoxydans]
gi|133739591|emb|CAL62642.1| NADH dehydrogenase [Herminiimonas arsenicoxydans]
Length = 460
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 121/454 (26%), Positives = 198/454 (43%), Gaps = 78/454 (17%)
Query: 63 SEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122
S D + +Q + RI I+GGG GGL A L + + + + V+LVD+S ++
Sbjct: 9 SADTTTTQQRSGTGDAPHRIVIVGGGAGGLELATTLGNKLVKSGRI-SVVLVDRSSTHIW 67
Query: 123 KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTV 182
KP+L+E+ +G +DA +A F + +K L + +A G +
Sbjct: 68 KPLLHEVAAGSMDANTHQLEYAAQARWHRFVFQQGELKGLDRTRKTISIASLADEDGIEL 127
Query: 183 LLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----- 237
L E + YD L+L++G+ VPGAA+ A TL +A R++ + R
Sbjct: 128 LPERE--IAYDTLILAIGSVTNFFNVPGAAQHAIAVDTLSEAEHFRRRMIGMCMRAEHAI 185
Query: 238 --NFGKDS-LIRVAVVGCGYSGVELAA---TVSERLEEKGIVQ---AINVETTICPTGTP 288
+ G++ + +A++G G +GVEL+A +E L G+ Q ++ T+ GT
Sbjct: 186 DTHAGQEHPKLNIAIIGAGATGVELSAELRNTAEVLGAYGLHQLDPLHDIRITVVEAGT- 244
Query: 289 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 348
++LS V + + + D +D + E+
Sbjct: 245 -------RILSG-------------------LPEPVSVKTTALLNKLGIDVLTDAKVSEV 278
Query: 349 QP-AIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 405
+ A+ ADL +W G + +L + NRL + + Q+ETD
Sbjct: 279 RKDAVLFANGGSIPADLTVWAAGIRAPAILGELGLAVNRLGQIIVTQTLQSETD------ 332
Query: 406 GHPRIFALGDSSAL----RDSSGRPLPATAQVAFQQADFAGWNLWAAINDR----PLLPF 457
P IFA GD +A ++S+ +P AQ A QQADF L+ AI R PL F
Sbjct: 333 --PDIFAFGDCAACPWPEKNST---IPPRAQAAHQQADF----LFNAIKKRLAQQPLPAF 383
Query: 458 RFQNLGEMMILGRNDAA--------VSPSFVEGV 483
+++LG ++ LGR DA S F+EG+
Sbjct: 384 EYRDLGSLVSLGRFDAVGNLMGPLIGSTLFIEGI 417
>gi|393200719|ref|YP_006462561.1| NADH dehydrogenase, FAD-containing subunit [Solibacillus silvestris
StLB046]
gi|327440050|dbj|BAK16415.1| NADH dehydrogenase, FAD-containing subunit [Solibacillus silvestris
StLB046]
Length = 395
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 174/435 (40%), Gaps = 65/435 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG GF G+ A + +D+ + + +V+Q L+ L G + +A
Sbjct: 5 EIVILGAGFAGVLAAQTARKYLNKDEAR--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V V+L +G ++YD LV++LG
Sbjct: 63 LPLEKIFKGYDINLEIAKVNSFDVESK-------------NVVLSNGKRLQYDTLVVALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFGKDSLIRVAVVGCG-YSGVE 258
++ +PG E +F ++++A + + + ++ KD V+G G +GVE
Sbjct: 110 SQTGFFGIPGLEENSFVLKSVDEANAIREHIEARIKAYATTKDEADATIVIGGGGLTGVE 169
Query: 259 LAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
L + + + + E EA K+L L+ +R
Sbjct: 170 LVGEIVDHFPKVAAKYGVKFEDLKIKL-----VEAGPKILPVFPENLIDRATKSLSKRGV 224
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
EF S P +G N+ K+ + + A+ ++WT G PL
Sbjct: 225 EFITST--PVTGVEGNVIQLKDREPIV----------------ANTLVWTGGVAPL---- 262
Query: 379 EPPNNRLHDLPLNA-------RGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPA- 429
PL A RG+A ++ L HP +F +GD+SA + G RP A
Sbjct: 263 ----------PLVAESGLAADRGKATINDFLQSTSHPEVFVIGDASAHIPNPGDRPTYAP 312
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND--AAVSPSFVEGVTLDG 487
TAQVA+QQ + AG+N++A I L F+F N G + LGR D A V + + V L
Sbjct: 313 TAQVAWQQGETAGYNIFAQIKGADLKEFKFTNSGTLGSLGRKDGIATVGANNTQLVGLPA 372
Query: 488 PIGHSARKLAYLIRL 502
+ A + Y+ +
Sbjct: 373 SLMKEASNIRYMTHI 387
>gi|187923508|ref|YP_001895150.1| NADH dehydrogenase [Burkholderia phytofirmans PsJN]
gi|187714702|gb|ACD15926.1| NADH dehydrogenase [Burkholderia phytofirmans PsJN]
Length = 445
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 167/407 (41%), Gaps = 51/407 (12%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
Q++L+D+ +KP+L+E SG++D ++A G +F + + L ++
Sbjct: 39 QIVLIDRWPTHFWKPLLHEAASGQLDPATHQLQYAVQAQRHGFEFEQGELTALDRAERHI 98
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ G +L V +D LVL++G+ + VPGAAE A P ++ A R
Sbjct: 99 TLSALHDADGREILPSRQ--VAFDTLVLAMGSVTQYFGVPGAAEHALPLESVAHAEAFRR 156
Query: 230 KLSEL--------ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281
KL + R D+ + + ++G G +GVELAA V + V+ +N T
Sbjct: 157 KLLDACLRANHARRARTAQADTPVSINIIGAGATGVELAAAV------RDTVRLLNRYTP 210
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----AIPNIAA 337
+ V + +R I G ++ + S + N+
Sbjct: 211 F-------------------SLDPVRDFRIRLIESSGRVLPALSETISARAQRMLANLGV 251
Query: 338 DKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD-LPLNARGQ 395
D S + E++ A+ +D+ +WT G PP R D + +N Q
Sbjct: 252 DVLSSTRVTEVRTDAVLTDGGAPLASDIAIWTAGIS------GPPVLRTLDGIAVNRNAQ 305
Query: 396 AETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 454
+ + TL +F LGD +A D +G L AQVA QQA F L I L
Sbjct: 306 IQVNRTLQCTNDANVFGLGDCAACPADDAGAFLAPRAQVAHQQALFLARTLKCRIAGEAL 365
Query: 455 LPFRFQNLGEMMILGRNDAAVSPS---FVEGVTLDGPIGHSARKLAY 498
F +++ G ++ GR S S + V +DG + + KL Y
Sbjct: 366 PEFVYRDAGTLVGFGREGTIGSLSSSLLTQPVFVDGWLATAVYKLIY 412
>gi|172062279|ref|YP_001809930.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria MC40-6]
gi|171994796|gb|ACB65714.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MC40-6]
Length = 452
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 173/415 (41%), Gaps = 57/415 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTATIAAVQDADGTEILPPRAL--GYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + I + V
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPAQPAAPICINV 191
Query: 250 VGCGYSGVELAATVSERLEE------KGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
+G G +GVELAA + +++ K +V A +V + E ++L A
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLI--------EGGPRILPA--- 240
Query: 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEA 362
+A + + + D +D + E+ A+ + +
Sbjct: 241 ----------------LDARLSARMHAQLRTLNVDVLTDTRVAEVGADAVTTATGERLAS 284
Query: 363 DLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL- 419
D+ +W G V P L D+ LN Q +TL P ++A GD +A
Sbjct: 285 DITIWAAG-------VAGPAILRELGDIALNRSNQVIVSDTLQTPDDPHVYAFGDCAACP 337
Query: 420 -RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
D+SG LP AQVA QQA + G L + +P+ F F++ G ++ LG+ A
Sbjct: 338 SADASGF-LPPRAQVAHQQAVYLGEALARRLAGKPVAGFTFRDAGTVVSLGQAGA 391
>gi|113868698|ref|YP_727187.1| NADH dehydrogenase type2 [Ralstonia eutropha H16]
gi|113527474|emb|CAJ93819.1| NADH dehydrogenase type2 [Ralstonia eutropha H16]
Length = 441
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 166/384 (43%), Gaps = 49/384 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV+LVD+ ++KP+L+E+ +G +D +A A F+ ++ L D
Sbjct: 34 QAQVVLVDRLPTHIWKPLLHEVAAGSMDPNTHQLEYA---AQARWHHFEFQLGELTGIDR 90
Query: 168 L--GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ ++ + G LL + + YD LVL++G VPGAAE A + A
Sbjct: 91 IRKTISVSASFDEDGAELLPAREL-PYDTLVLAIGCVTHFFGVPGAAENAIALDVVAQAE 149
Query: 226 RVDRKL------SELERRNFGKDSLIR--VAVVGCGYSGVELAA---TVSERLEEKGIVQ 274
R ++L ++ R G D R VA++G G +GVEL+A + L G+ Q
Sbjct: 150 RFRKRLIAACVRAQNWRGRVGADGRPRVDVAIIGAGATGVELSAELRNTAHVLSAYGLHQ 209
Query: 275 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 334
+ P R+ + V+ A R + V + +
Sbjct: 210 -------LDP-----RRDVHIHVIEAGP------------RILPALSERVSVETAKLLKK 245
Query: 335 IAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393
+ D + + + E+ P A+ + +ADL +W G PP LP++ +
Sbjct: 246 LDVDVLTSERVTEVTPQAVLTASGKHIDADLTVWAAGI------TAPPVLATLGLPVSRQ 299
Query: 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGR-PLPATAQVAFQQADFAGWNLWAAINDR 452
GQ TL +G P IFA GD ++ + + +P AQ A QQA F L A ++ R
Sbjct: 300 GQIVVGPTLQSEGDPDIFAFGDCASCPWAEKQTTVPPRAQAAHQQATFLYSALRARLDGR 359
Query: 453 PLLPFRFQNLGEMMILGRNDAAVS 476
PL F F++LG ++ LG A S
Sbjct: 360 PLPSFAFKDLGSLVSLGHFSAVGS 383
>gi|313891212|ref|ZP_07824831.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
pseudoporcinus SPIN 20026]
gi|416851397|ref|ZP_11908542.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
pseudoporcinus LQ 940-04]
gi|313120575|gb|EFR43695.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
pseudoporcinus SPIN 20026]
gi|356738886|gb|EHI64118.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
pseudoporcinus LQ 940-04]
Length = 403
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 183/415 (44%), Gaps = 63/415 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ +LG G+ GL T L+ + LVD+++ L+E+ +G +I+
Sbjct: 4 VLVLGAGYAGLKTVRNLQKQAGD----FHITLVDRNDYHYEATELHEVAAGSQPKEKISY 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ V F +D V + P + TV L++ + YD++V+SLG
Sbjct: 60 PIRDVINPKKVTFIQDDVVKVNPEE-------------STVELKNSGTLHYDYVVVSLGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD-SLIRVAVVGCGYSGVEL 259
+ + GA E A + A + + L +E+ KD + +R+ + G G++G+EL
Sbjct: 107 CSETFGISGAKENALQMVDINTAENIHNHILHMMEKYRETKDKNYLRLLICGAGFTGIEL 166
Query: 260 A-ATVSERLEEKGI--VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316
A A V ER + V +E IC EAA ++L +L Y V I++
Sbjct: 167 AGALVDERKRYAKLAGVAEDQIEI-IC-------LEAATRILPMFDDKLAQ-YGVDLIQK 217
Query: 317 VG---EFEASVKQPESGAIPNIAA-DKNSDKYILELQPAIKGLESQIFEADLVLWTVG-- 370
+G + +K+ + G + + + D+N++++ ++ A+ ++WT G
Sbjct: 218 LGVNLMLGSMIKEIKPGEVVYVTSPDENAERHSID--------------AETIIWTTGVS 263
Query: 371 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPA 429
P++ R G+ ++ L + +++ LGD SAL D + RP P
Sbjct: 264 GSPIMGESGFAERR---------GRVVVNKDLRDPKYDKVYILGDVSALIDPETNRPFPT 314
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA--AVSPSFVEG 482
TAQ+A + A NL +N F +++LG + +G A V S V+G
Sbjct: 315 TAQIATRMGAHAAKNLARQLNGEKTEDFNYKSLGTVASVGNTHAFGLVGKSKVKG 369
>gi|298244179|ref|ZP_06967985.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ktedonobacter racemifer DSM 44963]
gi|297551660|gb|EFH85525.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ktedonobacter racemifer DSM 44963]
Length = 441
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 174/403 (43%), Gaps = 62/403 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+ I+G GFGGL A L D QV ++D++ +F+P+LY++ + + +I
Sbjct: 17 PRVVIVGAGFGGLRVARSLR------DAPAQVTVIDKNNHHLFQPLLYQVATAGLSPADI 70
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ +L + ++ LL + GV+ ++L + + YD+L+L+
Sbjct: 71 SAPIRSILKSQ-----QNTTVLLA--EVTGVDTER------QLVLTAEREIPYDYLILAT 117
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCG 253
GA ++FA T+ DA + R++ +E+E + L+ +VG G
Sbjct: 118 GAAHSYFGHDEWSDFAPGLKTITDATHIRRQVLLAFEAAEMEPDPDRQQELMTFVLVGAG 177
Query: 254 YSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313
+GVE++ ++E L K + + + + R +++L V
Sbjct: 178 PTGVEMSGAIAE-LAHKALAR-------------------DFRHIDPRSARVIL---VEA 214
Query: 314 IRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ R+ F + Q A+ ++ + ++ + + + Q A V+WT G
Sbjct: 215 MPRILPAFPEKLAQKARKALNHLGVEVRTNSPVENIDREGVVVAGQRIPARNVIWTAGV- 273
Query: 373 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432
P + ++ G+ + L V G P +F +GD+S+L +G+PLP A
Sbjct: 274 -----AASPAGKWLQAEVDRAGRVKVQPDLSVPGLPNVFVIGDTSSLMQ-NGKPLPGVAP 327
Query: 433 VAFQQADFAGWNLWAAIN----DRPLLPFRFQNLGEMMILGRN 471
VA QQ ++ G + + P F++ N G + +GR+
Sbjct: 328 VAMQQGNYIGSLIVQKVKGSQASEP--AFQYTNKGNLATVGRS 368
>gi|383778463|ref|YP_005463029.1| putative pyridine nucleotide-disulfide oxidoreductase [Actinoplanes
missouriensis 431]
gi|381371695|dbj|BAL88513.1| putative pyridine nucleotide-disulfide oxidoreductase [Actinoplanes
missouriensis 431]
Length = 439
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 160/400 (40%), Gaps = 55/400 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV------- 134
+ I+G GF G+ A RL + + + +V LVD++ F+P+LY++ + E+
Sbjct: 7 VVIVGAGFAGVACARRLAA-----EPRARVTLVDRNGYHQFQPLLYQIATAELAPRDIRF 61
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
D E+ R A + TG V + P H +V ++ D
Sbjct: 62 DLHEMFARHASVRTRTG------EVVAIDP-------------HSPSVTFADDSMLAADV 102
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
LVL GA+P PGA + P +L DA RV ++ EL R D+ + + G
Sbjct: 103 LVLGAGAQPNFFHTPGAEQHTVPLYSLTDAERVRGRILELFR-----DAAAKPELAADGA 157
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
+ +E G + I + + P P L + AR + + LG+ V
Sbjct: 158 LTFVVVGGGPTGVETAGALAEIVHD--VMPHVYP-----HLAIAGARVILVDLGHTVLTA 210
Query: 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKP 373
+V+Q + + + E+ P + + + LV+W G
Sbjct: 211 FSDDAHSYAVQQ-----LTRRGVELRLGVSVKEVTPDGVTLSDGTTIKTRLVVWGGGQS- 264
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433
P LP G+ + L V G P+++ALGD + + + G LP V
Sbjct: 265 -----AAPLASRSGLPQGRGGRIDVQPDLSVAGFPKVYALGDVANIPGADGEALPQLGSV 319
Query: 434 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
A Q D+A N+ A + PF +++ G M ++GR A
Sbjct: 320 AQQAGDWAAGNIIADLEGDRRQPFHYRDKGIMAMIGRKAA 359
>gi|434395238|ref|YP_007130185.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
gi|428267079|gb|AFZ33025.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
Length = 453
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 162/384 (42%), Gaps = 51/384 (13%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIA-PRFADLLANTGVQFFKDRVKLLCPSDHL 168
+V L+D+ +F+P+LY++ +G + +I+ P + L N + V + P H
Sbjct: 35 EVTLIDKRNFHLFQPLLYQVATGTLSPADISSPLRSVLNRNKNTKVLMGEVVDIDPEQH- 93
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
V L++ + YD L+++ G + +EFA T+EDA +
Sbjct: 94 ------------KVTLQNQEL-HYDSLIVATGVKHSYFGKDEWSEFAPGLKTVEDALEMR 140
Query: 229 RKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282
R++ +E E + + + +VG G +GVELA ++E N++T
Sbjct: 141 RRIFVAFEAAEKETDPEKRRAWLTFVIVGGGPTGVELAGAIAELAYSTLKKDFRNIDT-- 198
Query: 283 CPTGTPGNREAALKVLSARKVQLVLGYFV-----RCIRRVGEFEASVKQPESGAIPNIAA 337
A K+L + +L + + + + + +V+ + NIA
Sbjct: 199 ----------AEAKILLLEGMDRLLPPYAPELSAKAAKSLQQLGVTVQT--KTLVTNIAD 246
Query: 338 DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 397
D + K +G E A VLW G K P E R L+ G+
Sbjct: 247 DIVTTK---------QGDEVAQIAAKTVLWAAGVKAS-PMGETLAKRT-GAQLDRAGRVI 295
Query: 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 457
+ L + GHP IF +GD + +G+PLP A VA Q+ + + + ++ L PF
Sbjct: 296 VEPDLSIPGHPNIFVVGDLANFSHQNGKPLPGVAPVAMQEGQYVAALIKQRLQEKTLPPF 355
Query: 458 RFQNLGEMMILGRNDAAVSPSFVE 481
+ + G + ++GRN A V FV+
Sbjct: 356 SYLDRGSLAVIGRNAAVVDFGFVK 379
>gi|317505341|ref|ZP_07963269.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella salivae
DSM 15606]
gi|315663555|gb|EFV03294.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella salivae
DSM 15606]
Length = 424
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 149/381 (39%), Gaps = 54/381 (14%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
D QV+LVD++ F P++Y++ S ++ I+ F L FF+ +
Sbjct: 31 DTDFQVVLVDKNNYNQFPPLIYQVASAGLEPSNISFPFRRLFQGWKNFFFR-----MAEV 85
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
H+ T GT+ YD LVL+ GA A P ++ ++
Sbjct: 86 QHIDTEEKAIKTSIGTI--------HYDDLVLAAGATTNFFGNKNIEASALPMKSVSESM 137
Query: 226 RVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279
R+ + +E E K +L+ +A+VG G SGVE+A ++E ++
Sbjct: 138 RLRNTILQNLERAETEDNEARKQALMNIAIVGGGPSGVEIAGVLAE------------MK 185
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
TI P P + + + +LG R E E ++K+ + N
Sbjct: 186 QTILPRDYPDLDTSCMHIYLINATPRLLGAMSE--RSSREAEKALKELGVEVMTNCMVTD 243
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE-- 397
DK ++ +K + Q A+ V+W G K N + +P + G A
Sbjct: 244 YVDKELV-----LK--DGQRISAETVIWVSGIKA---------NNIDGIPTESIGHAGRI 287
Query: 398 -TDETLCVKGHPRIFALGDSSALRDSSGRPL--PATAQVAFQQADFAGWNLWAAINDRPL 454
D VKG ++A+GD + P P AQVA QQA NL
Sbjct: 288 LVDRFNRVKGLKDVYAIGDQCIVEGDEAYPYGHPQLAQVAIQQAKTLAKNLIRQEKGDTE 347
Query: 455 LPFRFQNLGEMMILGRNDAAV 475
PF + NLG M +GR A V
Sbjct: 348 QPFSYHNLGTMATIGRKKAVV 368
>gi|330993705|ref|ZP_08317639.1| NADH dehydrogenase [Gluconacetobacter sp. SXCC-1]
gi|329759279|gb|EGG75789.1| NADH dehydrogenase [Gluconacetobacter sp. SXCC-1]
Length = 426
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 153/364 (42%), Gaps = 36/364 (9%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD+S V+KPML+ +G F + +F+ + + +
Sbjct: 32 RAQVTLVDKSFAHVWKPMLHCFAAGTAANENDRISFLSQASRHHFEFWPGEIAGMDRTAK 91
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
P+ G +L E L EYD L+LS+G+ PG AE L +A
Sbjct: 92 TITLAPVVEPTGEVILDERKL--EYDALILSIGSRANDFGTPGVAEHCLFIDNLVEANGF 149
Query: 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT 287
+ + + FG + + +A+VG G +G +LAA + + L+ + +
Sbjct: 150 NERFRMELLKAFGNNEELDIAIVGGGATGTQLAAELHKALD-------------LASLYS 196
Query: 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVG--EFEASVKQPESGAIPNIAADKNSDKYI 345
G + LK+ +L F + E EA ++ A+ + A +K ++
Sbjct: 197 FGKKPPKLKITLLEAGPRILPAFPEAVSAAAQKELEAIGVTVQTSAMVSGADEKG---FM 253
Query: 346 LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 405
L+ + A L +W G K P V + DL L+ GQ E TL +
Sbjct: 254 LK--------DGTRIPATLRVWAAGVKA--PDV---TRKFGDLKLSRSGQLEVRPTLQLV 300
Query: 406 GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 465
IFA+GD + + + +P+ TAQ A QQA ++ A IN R L PF F N G +
Sbjct: 301 EDDNIFAVGDCAFIAE---KPVAPTAQAARQQAHHLARHIPAWINGRALPPFAFHNKGAV 357
Query: 466 MILG 469
+ LG
Sbjct: 358 VALG 361
>gi|326331940|ref|ZP_08198226.1| NADH dehydrogenase [Nocardioidaceae bacterium Broad-1]
gi|325950253|gb|EGD42307.1| NADH dehydrogenase [Nocardioidaceae bacterium Broad-1]
Length = 480
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/471 (23%), Positives = 184/471 (39%), Gaps = 93/471 (19%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D+ K R+ I+G GFGGL++A ++ +DD +V L+ ++ +F+P+LY++ +G +
Sbjct: 4 DQAKHRVVIIGSGFGGLFSA---KAFKGRDD--VEVTLIAKTTHHLFQPLLYQVATGILS 58
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
EIAP D+L K+ LL + G +L + V YD L
Sbjct: 59 QGEIAPPTRDILHRQ-----KNARVLLGEVSEIDTEGKTVKAS----ILNQEIDVPYDSL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGK-------------- 241
+++ GA AEFA +++DA EL R FG
Sbjct: 110 IVAAGAGQSYFGNDHFAEFAPGMKSIDDAL-------ELRGRIFGAFEIAELTASRGEPI 162
Query: 242 DSLIRVAVVGCGYSGVELAATVSE---RL---------EEKGIVQAINVETTICPTGTPG 289
L+ VVG G +GVE+A ++E R+ EK V ++ + P
Sbjct: 163 GDLLTFVVVGAGPTGVEMAGQIAELSRRVLKKDFTHIQSEKARVVLVDAAPQVLPPFGEK 222
Query: 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349
A K L V++VLG V + G E K + I +IA
Sbjct: 223 LGAKAEKALEKAGVEVVLGAMVTHVDEFG-IEMKFKDGRTERIGSIAK------------ 269
Query: 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKG 406
+W G + P L + L+ G+ + L + G
Sbjct: 270 ----------------IWAAGVQ-----ASPLGKTLSEQTGAELDRAGRIAVNPDLTLPG 308
Query: 407 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEM 465
HP IF +GD +L LP AQVA Q + + A + ++P F++ + G M
Sbjct: 309 HPEIFVVGDMISLDH-----LPGVAQVAIQGGKHSAKTIKARLKNKPEPGNFKYFDKGSM 363
Query: 466 MILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ R +A + + L G + L +L + +RL + W+
Sbjct: 364 ATISRFNAVL---MMGSFKLSGVLAWFGWLLVHLAYMTGFRNRLTATLHWM 411
>gi|296505368|ref|YP_003667068.1| NADH dehydrogenase [Bacillus thuringiensis BMB171]
gi|296326420|gb|ADH09348.1| NADH dehydrogenase [Bacillus thuringiensis BMB171]
Length = 387
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/398 (22%), Positives = 167/398 (41%), Gaps = 71/398 (17%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
+ T +RL+ + ++ ++ LV+ + L+E +G + +I D++
Sbjct: 1 MITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLQDEKICLDIQDVIDTNK 58
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
V F +D V + ++ ++L+ G + EYD+LV+ LG E + + G
Sbjct: 59 VNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVIGLGFESETFGITGL 104
Query: 212 AEFAFPFSTLEDACRVDRKLSELERRNFG---KDSLIRVAVVGCGYSGVELAATVSERL- 267
E AF + + +A R R+ E + +D L+ + V G G++G+E ++ R+
Sbjct: 105 KEHAFSIANI-NATREIREHMEASFSKYATEQRDELVTIVVGGAGFTGIEYVGELANRVP 163
Query: 268 ---------EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318
EK + + T P P E A+K L + V+ +G ++
Sbjct: 164 ELCKEYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVEFRIGTAIK------ 217
Query: 319 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378
EA+ E G I G ++++ +++ V+W G +
Sbjct: 218 --EAT----EEGII------------------VANGDDTELIKSETVVWAAGVRG----- 248
Query: 379 EPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQ 436
N + + A RG+ + DE + G+ +F +GD++ + + RP P TAQ+A Q
Sbjct: 249 ---NGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEEINRPYPPTAQIAIQ 305
Query: 437 QADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 473
Q NL + + + F F N G + LG +DA
Sbjct: 306 QGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 343
>gi|402833902|ref|ZP_10882510.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. CM52]
gi|402279370|gb|EJU28157.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. CM52]
Length = 425
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/421 (24%), Positives = 175/421 (41%), Gaps = 77/421 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPRI ILGGG G+ A +L ++ VL++D + VF+P+LY++ + + A E
Sbjct: 7 KPRIVILGGGIAGIRAARKLA------NEAVDVLIIDHNNYQVFQPLLYQVATSMLSADE 60
Query: 139 -IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I P + + V F ++ G++ TV + G I +YD L++
Sbjct: 61 VIYPIRGFFRSASNVNFLLAEIE--------GIDAA-----AQTVRTDQGEI-DYDHLII 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKDSLIRVAV-----VG 251
+LG+ P E + P TL D+ + L E + KD+ R A+ VG
Sbjct: 107 ALGSTPNFFGSKSIEENSLPLKTLVDSIEIRSHVLKVFEEASREKDAAKRKALLTFVFVG 166
Query: 252 CGYSGVELAATVSERL-----EEKGIVQAINVETTICPTGTPGN--------REAALKVL 298
G GVE + +SE + +E + VE + PG R+ ++VL
Sbjct: 167 AGPIGVEGSGGLSELIYDVFQKEYHTIDFSEVEIHLI-GADPGVLMMMPEKLRDETVRVL 225
Query: 299 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358
+KV V+C V +++ + + + P K Q
Sbjct: 226 EKKKVA------VQCSMMVTDYDGETLRYKPFSAP-------------------KDAPLQ 260
Query: 359 IFEADLVLWTVGSKPL--LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416
+ V+W G +P+ L ++ +R + + D+T+ G ++A GD
Sbjct: 261 EIKTRTVVWAAGVRPVDCLDGLDVQKDRGRRIIV--------DDTMHAIGFENVYAAGDC 312
Query: 417 SALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
S+ RPLP A VA + D A N+ + PL +++ G M I+G ++A +
Sbjct: 313 SSFTPPGEERPLPTLAPVALAEGDVAAANILHKLKGEPLEHLDYKSKGVMAIIGNSEAVM 372
Query: 476 S 476
S
Sbjct: 373 S 373
>gi|119510896|ref|ZP_01630019.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nodularia spumigena CCY9414]
gi|119464424|gb|EAW45338.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nodularia spumigena CCY9414]
Length = 453
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/425 (24%), Positives = 177/425 (41%), Gaps = 81/425 (19%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+GGGFGGLYTA L ++ L+D+ +F+P+LY++ +G + +I+
Sbjct: 12 RVVIIGGGFGGLYTAKTLAK------ANVKITLIDKRNFHLFQPLLYQVATGTLSPADIS 65
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P + L + Q V + P V+L+ ++ YD L+++
Sbjct: 66 SPLRSVLRKSKNTQVLLGEVNDIDPK-------------AQEVILDEK-VIPYDTLIVAT 111
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCG 253
GA E+A T+EDA + R++ +E E + + + +VG G
Sbjct: 112 GANHSYFGKDEWKEYAPGLKTVEDAIEIRRRIFSAFEAAEKESDPEKRRAFLTFVIVGAG 171
Query: 254 YSGVELAATVSERLEEKGIVQAI-NVETT------------ICPTGTPGNREAALKVLSA 300
+GVELA ++E L K + + N+ T+ I P +P +AA + L +
Sbjct: 172 PTGVELAGAIAE-LAYKTLQEDFRNISTSETRILILQGRDRILPYISPDLSQAAAEALES 230
Query: 301 RKVQLVLGYFVRCIRRVGEFEAS-VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
LG V RV + E + V E G + IA+
Sbjct: 231 ------LGVEVHTKARVTDIENNIVTFKEGGEVKEIASKT-------------------- 264
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLH---DLPLNARGQAETDETLCVKGHPRIFALGDS 416
+LW G K P L D+ + G+ + L +KG+ IF +GD
Sbjct: 265 -----ILWAAGVK-----ASPMGKVLQERTDVECDHAGRVMVEPDLTIKGYKNIFVVGDL 314
Query: 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ G+PLP A VA QQ ++ + A R L F + ++G + ++G+N A V
Sbjct: 315 ANFSHQHGKPLPGVAPVAKQQGEYVAKLIQARAKGRTLPQFDYNDVGSLAMIGQNLAVVD 374
Query: 477 PSFVE 481
++
Sbjct: 375 LGLIK 379
>gi|161521783|ref|YP_001585210.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189352055|ref|YP_001947682.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
gi|160345833|gb|ABX18918.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189336077|dbj|BAG45146.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
Length = 452
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 171/408 (41%), Gaps = 43/408 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHT-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFGKDSL-------IRVAV 249
++G+ VPGAA A P L+ A RK L+ + N + + ++V
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309
+G G +GVELAA + A+ TT G R+ +++L+ G
Sbjct: 192 IGAGATGVELAAALR---------HAVQQLTTYRFKALDGARDV--------RIRLIEG- 233
Query: 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWT 368
R + +A + + + + +D + E+ A+ + +D+ +W
Sbjct: 234 ---APRILPALDARLSDKMHAQLRALNVEVLTDTRVAEVGADAVTIASGERLASDITIWA 290
Query: 369 VGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGR 425
G V P L + LN Q +TL P + A GD +A + +
Sbjct: 291 AG-------VAGPAILRELDGIALNRSNQVIVTDTLQTPDDPHVHAFGDCAACPSNGASG 343
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
LP AQVA QQA + I +P+ F F++ G ++ LG A
Sbjct: 344 CLPPRAQVAHQQAVYLSQAFARRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|344171960|emb|CCA84586.1| NADH dehydrogenase [Ralstonia syzygii R24]
Length = 441
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 177/429 (41%), Gaps = 50/429 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRAA 96
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ G VL E + YD LVL++G+ VPG AE A A R
Sbjct: 97 KIITVSGCIDADGTEVLPERA--IAYDVLVLAIGSVTHFFGVPGTAEHAIALDAASQAER 154
Query: 227 VDRKL-SELERRNFG---KDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282
RKL S R G + + +A+VG G +GVEL+A + N +
Sbjct: 155 FRRKLISACMRAQNGVGDARAQVDIAIVGAGATGVELSAELR------------NTAHVL 202
Query: 283 CPTGTPGNREAALKVLSAR---KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
G L L R ++ L+ G R + V + + + D
Sbjct: 203 AAYG--------LHKLDPRRDIRIHLIEG----SPRILAALSERVSTETTKLLHKLNVDV 250
Query: 340 NSDKYILELQ-PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 398
+ + ++E+ A+ + ADL +W G + P LP+N GQ
Sbjct: 251 ITGERVIEVTGSAVDTASGKSIPADLTVWAAGIRA------PSILGELGLPVNKLGQVVV 304
Query: 399 DETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 457
TL +G I+A GD +S + +P AQ A QQA + L + +P+ PF
Sbjct: 305 SRTLQAEGDDAIYAFGDCASCPWPEASASVPPRAQAAHQQATYLYKALCRRLEGKPVEPF 364
Query: 458 RFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSW 515
F++LG ++ LG A G + G IG + + RL T +R+ V +
Sbjct: 365 GFKDLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHG 417
Query: 516 LTKSAIDSV 524
+ A+D+V
Sbjct: 418 FVRMALDTV 426
>gi|325104767|ref|YP_004274421.1| NADH dehydrogenase (ubiquinone) [Pedobacter saltans DSM 12145]
gi|324973615|gb|ADY52599.1| NADH dehydrogenase (ubiquinone) [Pedobacter saltans DSM 12145]
Length = 432
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 49/382 (12%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
DK+ +VL++D+ F+P+LY++ +G ++A IA + + + FK RV
Sbjct: 29 DKEVEVLMIDRHNYHTFQPLLYQVATGALEADSIAFPLRKIFQHQ--KNFKFRV------ 80
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
N + T+ G EYD+LVL+ G+E ++ P T+ +A
Sbjct: 81 ----ANVTQINSESNTISTSIGDF-EYDYLVLATGSETNFFGQKEIEHYSMPMKTVPEAL 135
Query: 226 RVDRKLSE------LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279
+ + + +E K++L+ +VG G +GVE A ++E ++
Sbjct: 136 NLRSMILQNFEEAVMETDEQVKEALLNFVIVGAGPTGVETAGALAE------------LK 183
Query: 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
+ P+ + +K+ VL F R ++ +++ + N D+
Sbjct: 184 KHVLPSDYSELDFSKMKIYLVEGANRVLPPFSEQASRKA--QSFLEEMGVDVLTNTMVDQ 241
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSK-PLLPHVEPPNNRLHDLPLNARGQAET 398
K I + + + V+W+ G K ++P ++ + G+ +T
Sbjct: 242 YDGK-------VISFKDGKTIRTNNVVWSAGVKGAVIPGIDKAQ-------IVRGGRIKT 287
Query: 399 DETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 457
++G+ IFA+GD S + + P AQVA QQ G NL IN+ + PF
Sbjct: 288 TTYNLIEGYNNIFAIGDVSYMEVEKFPNGHPGVAQVAIQQGQQLGDNLIRLINNEEVKPF 347
Query: 458 RFQNLGEMMILGRNDAAVSPSF 479
+ + G M +GRN A V F
Sbjct: 348 DYFDKGSMATVGRNKAVVDLKF 369
>gi|116252956|ref|YP_768794.1| transmembrane NADH dehydrogenase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257604|emb|CAK08701.1| putative transmembrane NADH dehydrogenase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 421
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 177/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 KITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 EVTGVD-----SGAKTVSLRNGMTLGYDTLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R++ +E+E +D+L+ +VG G +GVELA ++E
Sbjct: 124 --LKTLEDATTIRRRVLLAFEKAEMEADPAVRDALLTFTIVGAGPTGVELAGIIAELAHF 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V RV F +
Sbjct: 182 TLPKEFRNIDT--------------------RKTRVVL---VEAGPRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + + K + E + + ++W G P + +
Sbjct: 219 RKALEKLGVEIHLGKPVTECNADGVKIGETFVASRTIVWAAGV------TASPAAQWLGV 272
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P + G+ ++ L G P +F +GD++++ G+P+P A A QQ + + A
Sbjct: 273 PADRAGRVVVEKDLSAPGLPEVFVVGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRAR 332
Query: 449 INDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
I +P PFR+ + G + +G++ A + ++ L G + LA++ L
Sbjct: 333 ILGKPAPAPFRYWHQGSLATIGKSAAIIDFGRIK---LKGWLAWWIWGLAHIYFLIGTRS 389
Query: 508 RLKVGVSWL 516
R V SWL
Sbjct: 390 RFSVAWSWL 398
>gi|258652530|ref|YP_003201686.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nakamurella multipartita DSM 44233]
gi|258555755|gb|ACV78697.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nakamurella multipartita DSM 44233]
Length = 445
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 173/417 (41%), Gaps = 57/417 (13%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF-ADLLANTGVQFFKDRVKLLCP-SDHL 168
+ LVD+ F+P+LY++ + ++ ++ A +A V F + V+ + P + H+
Sbjct: 53 ITLVDRHTYNAFQPLLYQVATAGLNPGDVTFFLRATRMAQRNVSFRQAEVEGIDPGTQHI 112
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV- 227
G G + YD+L+++ GA GA E + T A R+
Sbjct: 113 SFVG--------------GTGLHYDYLIIATGATTNYFGTKGAQENSLAIYTRAQALRLR 158
Query: 228 DRKLSELERR---NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284
D+ + LE N +D + + VVG G +GVE+A ++E + T+ P
Sbjct: 159 DKIFTNLEHAAAANTEED--LAIVVVGAGPTGVEMAGALAELRND--------AMATVYP 208
Query: 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344
P L +S + VL F +R +F A A+ + +
Sbjct: 209 ELDPRRTHIVLVEMSDK----VLAPFAPPLR---DFAAR-------ALRERGVELRLNTS 254
Query: 345 ILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403
+ E++P + + +A +V+W G P + LP G+ D+ L
Sbjct: 255 VAEVRPDGVVLGGGEFLKAGVVVWATGV------TVPAAVKDWGLPQGRGGRITVDKDLR 308
Query: 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 463
V G IFA+GD + L + PLP AQ A Q AG + A I RP PF + + G
Sbjct: 309 VTGFKNIFAVGDIALLPE----PLPQLAQPALQGGQHAGKQVVALIAGRPTHPFHYHDKG 364
Query: 464 EMMILGRNDAAVSPSFVEG--VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 518
M +GR A ++G + L G + A +++ L + +RL V+ TK
Sbjct: 365 TMATVGRRAAIADIQLIKGRSIRLTGTLAWLAWLFVHIVMLLGNRNRLATFVNLTTK 421
>gi|110833135|ref|YP_691994.1| NADH dehydrogenase [Alcanivorax borkumensis SK2]
gi|110646246|emb|CAL15722.1| NADH dehydrogenase [Alcanivorax borkumensis SK2]
Length = 430
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 154/377 (40%), Gaps = 65/377 (17%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
+ LVD S V+KP +E+ +G +DA A D A+ + ++ + D G
Sbjct: 34 ITLVDSSSIHVWKPRFHEVATGAIDADLDA---VDYRAHAQLNHYRFEPGTMTQMDTTGQ 90
Query: 171 N---GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
P+ HG VL E L YD+LVL+ G++ PG + + A R
Sbjct: 91 TLTLAPLYDAHGSEVLPERQL--SYDYLVLATGSQSNDFGTPGVRDNCLFMDSRGQAERF 148
Query: 228 -DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVS-----------ERLEEKGI-VQ 274
+R L+ N+ ++ I VA+VG G +GVELAA + E L+ K + V
Sbjct: 149 RERFLNACLHANY-ENKPISVAIVGGGATGVELAAELHHAVSMLNFYGHEHLDRKHLQVD 207
Query: 275 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 334
I I P + A K L V++ G + + A P
Sbjct: 208 IIEAAPRILPVLSERVSATATKRLEGLGVKVRTGVMI-----------------AEATPE 250
Query: 335 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNA 392
K+ D +ADL++W G V+ P +++ L N
Sbjct: 251 ALVPKDGDP----------------IKADLLVWAAG-------VKCPKWLSQIDGLSTNR 287
Query: 393 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451
Q E + TL KG IF +GD++ L + S RP+P AQ A Q A +L + D
Sbjct: 288 INQVEVEPTLQAKGQKNIFVIGDAAFLIPEGSERPIPPRAQSAQQMAQHTARSLQRLLMD 347
Query: 452 RPLLPFRFQNLGEMMIL 468
R PF +++ G ++ L
Sbjct: 348 RDPKPFEYKDHGSLVSL 364
>gi|157877617|ref|XP_001687125.1| putative NADH dehydrogenase [Leishmania major strain Friedlin]
gi|68130200|emb|CAJ09511.1| putative NADH dehydrogenase [Leishmania major strain Friedlin]
Length = 527
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 190/469 (40%), Gaps = 88/469 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + +LG G+ G Y A + D + ++ VF P+L + +G ++
Sbjct: 11 KPNVVVLGTGWAGSYAAHHV------DPNLCNIHVISTRNHMVFTPLLPQTTTGTLEFRS 64
Query: 139 IAPRFADL---LANTGVQFFK--------DRVKLLCP-------SDHLGVNGPMACTHGG 180
+ ++ LA +F + D ++ C S+++ VN
Sbjct: 65 VCEPITNIQPALAKPPHRFLRSVIYDVDFDEKQVKCVGVGVVGGSENVPVNT-------- 116
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNF 239
V YD+L+++ GA P +PG + AF + +A + ++L + + N
Sbjct: 117 -------FSVPYDYLIMAYGARPNTFNIPGVEDKAFFLREVNEARGIRKRLVQNIMTANL 169
Query: 240 GKDS------LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREA 293
S L+ VVG G +G+E AA ++E E NV T++ P
Sbjct: 170 PTTSIAEAKRLLHTVVVGGGPTGIEFAANLAEFFRE----DIKNVNTSLLPY-------C 218
Query: 294 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353
+ VL A + VLG F +RR G+ + E I A +D+ +
Sbjct: 219 KVTVLEAGE---VLGSFDNALRRYGQLRLNQLGVE---IRKTAVVGVTDEEVFTKS---- 268
Query: 354 GLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV----KGH 407
++ LV+W+ VGS P+ ++ RG+ D+ L V K
Sbjct: 269 ---GEVLPTGLVVWSTGVGSGPVTKALKCDKTN--------RGRISIDDHLRVLRDGKPI 317
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMM 466
P +FA GD +A ++ RPLP A VA +Q + G + + + PF +++LG M
Sbjct: 318 PNVFAAGDCAA---NNERPLPTLAAVASRQGRYIGKETNNLLKGKQMSKPFVYRSLGSMA 374
Query: 467 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+G A VS L+G K AYL L + +L V V+W
Sbjct: 375 SIGNRTAIVSLGDKFKFDLNGCAALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|398386006|ref|ZP_10544017.1| NADH dehydrogenase, FAD-containing subunit [Sphingobium sp. AP49]
gi|397718986|gb|EJK79560.1| NADH dehydrogenase, FAD-containing subunit [Sphingobium sp. AP49]
Length = 439
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 175/423 (41%), Gaps = 77/423 (18%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PDKK +I I+GGG GL A +L + + K+ ++L+D++ ++KP+L+E+ +G +
Sbjct: 3 PDKKI-QIVIVGGGAAGLELARKLGARYGR--KRHDIILIDRNRTHIWKPLLHEVATGSL 59
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
DA + G ++ ++ + + P+ G V+ S V YD+
Sbjct: 60 DASLDEVGYRSHCHRWGYRYLYGTLQGIDRAARRVHIAPVFDPKGREVV--SAHSVRYDY 117
Query: 195 LVLSLGAEPKLDVVPGAAEF-----------AFPFSTLEDACRVDRKLSELERRNFGKDS 243
LVL+ G+ PG A+ +F L+ RV R +S + D+
Sbjct: 118 LVLAYGSVTNDFGTPGVADNCLFLDSRAQADSFRDQLLDHCLRVSRAMSA----DPASDA 173
Query: 244 LIRVAVVGCGYSGVELAATVSERLEEKG-----IVQAINVETTICPTGTPGNREAALKVL 298
+R+A+VG G +GVELAA + + G + ++ T+ EA ++L
Sbjct: 174 RVRIAIVGGGATGVELAAELYNAADALGYYGLEVFDRQRLDVTLL--------EAGPRIL 225
Query: 299 ---------SARKVQLVLGYFVRC-IRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 348
+AR+ VLG VR I ++ + G +P
Sbjct: 226 PALPDRLADAAREELEVLGVKVRAGIAVTASTPQGMETKDGGFVP--------------- 270
Query: 349 QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHP 408
ADL +W G K + L L + GQ TL
Sbjct: 271 -------------ADLQVWAAGVK-----AAAIRDGLDGLEQSRAGQVIVRPTLQSLADD 312
Query: 409 RIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
R+FA+GD +S + RP+P AQ A Q AD NL + RPL F +++ G ++
Sbjct: 313 RVFAMGDCASYTPQGADRPIPPRAQAAHQMADTVFSNLGRLMAGRPLKSFVYKDHGSLVS 372
Query: 468 LGR 470
L R
Sbjct: 373 LSR 375
>gi|296121189|ref|YP_003628967.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Planctomyces limnophilus DSM 3776]
gi|296013529|gb|ADG66768.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Planctomyces limnophilus DSM 3776]
Length = 443
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 116/437 (26%), Positives = 185/437 (42%), Gaps = 62/437 (14%)
Query: 92 LYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA-N 149
L TA L K P + LVD+ +F+P+LY++ +G + IA + A
Sbjct: 19 LTTAKALR-------KTPVDITLVDRRNFHLFQPLLYQVATGGLSPGNIAAPLRSIFARQ 71
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
V D V +G + P VLL+ G + +D LV++ GA+
Sbjct: 72 RNVHVVMDEV--------IGFDLPRR-----RVLLQEGELA-FDSLVVAAGAKTGYFGND 117
Query: 210 GAAEFAFPFSTLEDACRV-DRKLSELERRN-----FGKDSLIRVAVVGCGYSGVELAATV 263
AE A T+EDA + R L+ E + ++ L+ VVG G +GVELA T+
Sbjct: 118 QWAENAPGLKTVEDAIEIRGRVLTAFEEADKLPTPQAREHLLTFVVVGAGPTGVELAGTL 177
Query: 264 SE--RLEEKGIVQAIN-VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 320
+E R + + IN ET I +AA ++L A L L + + E
Sbjct: 178 AEIARHTLRHDFRIINPAETRIILI------DAAPRILMAYAEDLALNAQKKLMDMGVEV 231
Query: 321 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHV 378
VK + D +E+ A +G+E QI A+ VLW G + PL +
Sbjct: 232 RTQVK------------IQKVDASGVEVMTA-QGVE-QIAAAN-VLWAAGVTASPLAKLL 276
Query: 379 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438
PL+ +G+ E L + GHP+++ +GD + + SG+ +P A A QQ
Sbjct: 277 SEATGA----PLDRQGRIEVQSDLTLPGHPQVYVIGDMAHFKLPSGQAVPGVAPAAMQQG 332
Query: 439 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 498
+ + + + L PF + +LG M +GR A + G I +
Sbjct: 333 KYVAKAIQSRFQNVSLSPFTYTDLGSMATIGRKAAIAQ---IGTWKFTGLIAWILWLFIH 389
Query: 499 LIRLPTDEHRLKVGVSW 515
LI++ + E R+ V + W
Sbjct: 390 LIQIVSFESRILVLIQW 406
>gi|299066169|emb|CBJ37352.1| NADH dehydrogenase [Ralstonia solanacearum CMR15]
Length = 441
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 176/426 (41%), Gaps = 44/426 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+ +V+L+D++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLIDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRAA 96
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
G VL E + YD LVL++G+ VPG AE A A R
Sbjct: 97 KTVTVSGCVDADGTEVLPER--TIAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAER 154
Query: 227 VDRKL-SELERRNFG---KDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282
RKL S R G + + +A+VG G +GVEL+A + N +
Sbjct: 155 FRRKLISACMRAQNGVGDARAQVDIAIVGAGATGVELSAELR------------NTAHVL 202
Query: 283 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 342
G L L ++ L+ G R + V + + + + +
Sbjct: 203 AAYGLH-----KLDPLRDIRIHLIEG----SPRILAALSERVSSETTKLLQKLNVEVITG 253
Query: 343 KYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 401
+ + ++ A+K L + ADL +W G + P LP+N GQ T
Sbjct: 254 ERVNQVTDSAVKTLSGKSIPADLTVWAAGIRA------PSILGELGLPVNKLGQVVVSRT 307
Query: 402 LCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 460
L +G I+A GD +S + +P AQ A QQA + L + +P+ PF F+
Sbjct: 308 LQAEGDDAIYAFGDCASCPWPEASTSVPPRAQAAHQQATYLYKALCRRLEGKPVEPFGFK 367
Query: 461 NLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTK 518
+LG ++ LG A G + G IG + + RL T +R+ V + +
Sbjct: 368 DLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVR 420
Query: 519 SAIDSV 524
A+D+V
Sbjct: 421 MALDTV 426
>gi|389865886|ref|YP_006368127.1| NADH dehydrogenase, FAD-containing subunit [Modestobacter marinus]
gi|388488090|emb|CCH89661.1| NADH dehydrogenase, FAD-containing subunit [Modestobacter marinus]
Length = 467
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/422 (25%), Positives = 176/422 (41%), Gaps = 76/422 (18%)
Query: 71 TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYEL 129
T T P ++PR+ I+G GFGGL+ A RL+ K P V L+ ++ +F+P+LY++
Sbjct: 3 TATQPTGQRPRVVIVGSGFGGLFAAQRLK-------KAPVDVTLIGKTTHHLFQPLLYQV 55
Query: 130 LSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
+G + EIAP ++L+ +D +++ + +A +V+L +
Sbjct: 56 ATGILSEGEIAPATREILSR------QDNARVVLGEV---TDIDLAARTVTSVVLGRTTV 106
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDS 243
EYD L+++ GA AE+A +++DA + + L+EL D
Sbjct: 107 HEYDELIVAAGAGQSYFGNDQFAEYAPGMKSIDDALELRGRIFGAFELAELATDPAEIDR 166
Query: 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 303
L+ VVG G +GVE+A ++E L + + + I PT SAR +
Sbjct: 167 LLTFVVVGAGPTGVEMAGQIAE-LARRTLRRDFR---NIDPT-------------SARVI 209
Query: 304 QL-----VLGYFVRCI-----RRVGEFEASVKQPESGAIPNIAAD----KNSDKYILELQ 349
L VL F + +R+ E V+ + N+ AD K+ D + +
Sbjct: 210 LLDAAPKVLPPFADSLGQNAHKRLNEIGVEVQL--GAMVTNVDADGIVVKDGDGHERRIH 267
Query: 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 409
A K +W G + + ++ G+ L + GHP
Sbjct: 268 SATK------------IWAAGVQA--SALGKLLGEQSGAAVDRAGRVSVQPDLTLPGHPE 313
Query: 410 IFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMIL 468
+ +GD +L LP AQVA Q FA + A RP P F + + G M +
Sbjct: 314 VHVVGDMISLNR-----LPGVAQVAIQGGRFAADAVKARAAGRPTAPEFHYHDKGSMATV 368
Query: 469 GR 470
R
Sbjct: 369 AR 370
>gi|383785150|ref|YP_005469720.1| NADH dehydrogenase [Leptospirillum ferrooxidans C2-3]
gi|383084063|dbj|BAM07590.1| NADH dehydrogenase [Leptospirillum ferrooxidans C2-3]
Length = 467
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 194/462 (41%), Gaps = 91/462 (19%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + RI +LG GFGGLYTA+ L+ + + ++ ++D+ F+F PML+ +G +
Sbjct: 29 PAVQPHRILVLGSGFGGLYTAVYLDRYL-KGLPDVRITVIDKHNFFLFTPMLHAAATGGL 87
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ IA + F K R+ H + ++ + + YD
Sbjct: 88 EPRYIAHSIRKI-------FRKTRI-------HAHIGEVLSIDLEKKTVSTQHRTMAYDD 133
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKD------SLIRVA 248
LV+SLG+ + E F +L+DA ++ + + + + +D S +
Sbjct: 134 LVISLGSRTNFMNLEDRLEGVFTLKSLKDAAVINNHVIRMFEKAYWEDDPEIRKSYLTFV 193
Query: 249 VVGCGYSGVELAATVSE-----------RLEEKGIVQAINVETT--ICPTGTPGNREAAL 295
VVG G +GVELA + E R +K ++ I VE T I P P AL
Sbjct: 194 VVGGGPTGVELAGELHEYATRELLRDFGRRIDKSEIRVILVEATSRILPMLPPNLSLEAL 253
Query: 296 KVLSARKVQLVL-----GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350
+ L + + ++L GY + ++ VG E IP+
Sbjct: 254 ERLRSIGIDVLLETRLEGYQNQKVQLVGGDE----------IPSTT-------------- 289
Query: 351 AIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHP 408
++W G K PL+ + DL + G+ + + TL P
Sbjct: 290 --------------LVWAAGVKTNPLVAAL--------DLEKDGIGRIKVNGTLESTKKP 327
Query: 409 RIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 467
++ +GD++ ++ SG P P TAQ A +QA N+ A + RP F +++G +
Sbjct: 328 HVWVVGDNAHSMNPHSGMPYPPTAQTAVRQAKVCAHNIVARLRKRPEKLFSHEHVGGFVS 387
Query: 468 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 509
+G N A +S + +TL G +G L Y+ +LP +RL
Sbjct: 388 IGDNYALLS---AKQLTLTGMVGWFLWNLVYIHKLPIIRYRL 426
>gi|414161729|ref|ZP_11417982.1| NADH dehydrogenase-like protein [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410875318|gb|EKS23239.1| NADH dehydrogenase-like protein [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 401
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 173/404 (42%), Gaps = 60/404 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL T +L+ ++ + + L+++ + +L+E +G V+ +I
Sbjct: 6 KVIVLGAGYAGLQTVTKLQKILPAGE--ADITLINRDDYHYESVLLHEASAGTVNYEDII 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++ V+F K V + P + T+ G YD LV+ LG
Sbjct: 64 FPIESVIKQDKVKFLKAEVTKIDPQ------AKVVETNNGRF--------NYDILVVGLG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG----KD-SLIRVAVVGCGYS 255
+ + G E A+ + A + R + E + N+ KD + V G G++
Sbjct: 110 FISETFGIKGMLEHAYQIENIHTARELSRHI-EDKFANYASSKEKDPKDLAFLVGGAGFT 168
Query: 256 GVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312
G+E ++ER++E K V V+ T EAA K+L +LV + V
Sbjct: 169 GIEFLGELTERVDELSNKYGVDRDKVKITCV--------EAAPKMLPMFDDELV-NHAVN 219
Query: 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372
+ G E + P GA N +++++ G + + EA+ +W G +
Sbjct: 220 YLEERG-VEFKIGTPIVGA--------NEKGFVVKV-----GDKEEQLEANTSVWAAGVR 265
Query: 373 PLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPA 429
++L + + RG+ ++ L G+ F +GD SA + + RPLP
Sbjct: 266 ---------GSKLMEESFDGVKRGRLVVNQDLTAPGYSETFVIGDVSAYIPEGEERPLPT 316
Query: 430 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
TAQ+A QQ + N+ ++ +P PF + N G + LG ND
Sbjct: 317 TAQIAMQQGENVAQNIKNILHGQPKEPFNYVNRGTVCSLGANDG 360
>gi|188993346|ref|YP_001905356.1| NADH dehydrogenase [Xanthomonas campestris pv. campestris str.
B100]
gi|167735106|emb|CAP53318.1| Putative NADH dehydrogenase [Xanthomonas campestris pv. campestris]
Length = 461
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 166/409 (40%), Gaps = 57/409 (13%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + + ++GGGF GL+ L D ++ L+D+ +F+P+LY++ + +
Sbjct: 38 PSRAPLHLVVVGGGFAGLWATRALA------DPDIRITLIDRQNHHLFQPLLYQVATAGL 91
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
A +IA +L + V++L LG +A T V+L G V YD
Sbjct: 92 SAPDIAAPLRHILRE------QRNVEVL-----LGDVAEIA-TDRRAVVLADGNTVNYDM 139
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRVA 248
L+L+ GA AE A TL DA + RKL +E E + + + A
Sbjct: 140 LLLATGATHAYFGNDHWAEHAPGLKTLYDALVLRRKLLLAFERAEAESDPAARAAWLSFA 199
Query: 249 VVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
VVG G +GVELA T++E R K + I+ + +A ++++ A
Sbjct: 200 VVGGGPTGVELAGTLAEIARHTLKNEFRHIDPQ------------QARVRLVEAGP---- 243
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
R + F + + + + ++ + + L A V+
Sbjct: 244 --------RVLPSFPDDLTDKARKQLERLGVEVHTGTPVTNIDAFGYQLGDTFVPARTVV 295
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
W G P R +PL+ G+ + L V GHP IF GD ++++ GRP
Sbjct: 296 WAAGV------AASPLARTLGVPLDRAGRVLVEPDLSVPGHPEIFVGGDLASVQ-QDGRP 348
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+P A A Q + A + F +Q+ G + +GR A V
Sbjct: 349 VPGVAPAAKQMGKHIAKAIRARQRGQAAPAFHYQDFGNLATIGRMAAIV 397
>gi|318041753|ref|ZP_07973709.1| NADH dehydrogenase [Synechococcus sp. CB0101]
Length = 485
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 116/434 (26%), Positives = 174/434 (40%), Gaps = 78/434 (17%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN-TGVQFFKDRVKLLCPSD 166
K +V L+D+ +F P+LY++ +G V ++A L+ + +Q V + P++
Sbjct: 40 KVRVTLIDKRNFNLFAPLLYQVATGLVSRGDVAIPLRMLVGDQANLQILLGEVTQIDPAE 99
Query: 167 H-LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ NG TH + YD LVL+ G+ A P LE A
Sbjct: 100 RSIAFNG----TH-----------LRYDHLVLATGSGSTYLGHEEWRALAPPMKILEHAE 144
Query: 226 RVDRKL----SELERRNFGKDS--LIRVAVVGCGYSGVELAATVSERLEEK--GIVQAIN 277
+ R+L E ER K L V VVG G SG ELA +V+E + + ++
Sbjct: 145 EIRRRLLMALEEAERTVDPKQRQFLQTVVVVGSGPSGCELAGSVAELMRRALAKDFRRVD 204
Query: 278 VETTICPTGTPGNR----------EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 327
E T G R EAA L A+ ++LV G V QP
Sbjct: 205 PEQTRVVLVVSGGRVLKELPELLSEAASADLRAKGIELVPGRVV------------AMQP 252
Query: 328 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 387
I + +D+ L +Q A V WT G + RL D
Sbjct: 253 GEVVI------RCADEQELPVQAAN------------VFWTAGVR-----ASKLGQRLAD 289
Query: 388 ---LPLNARGQAETDETLCVKGHPRIFALGD--SSALRDSSGRPLPATAQVAFQQADFAG 442
L+ G+ + + G+P I +GD A S G+ +P A A Q + G
Sbjct: 290 ATGCALDRGGRVIVEPDFSIAGYPDIRVVGDLCHYAHASSDGQAIPGMAGPATQMGQWVG 349
Query: 443 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 502
+ A + R PFR+ + G M +LGR A + + G+ L G G LA+L +
Sbjct: 350 REIRAQLEGRAHAPFRYVDFGSMAVLGRLSAVAN---LRGIKLAGFPGWVLWALAHLAFM 406
Query: 503 PTDEHRLKVGVSWL 516
P DE+R+ + V WL
Sbjct: 407 PDDENRITLLVKWL 420
>gi|375293092|ref|YP_005127631.1| NADH dehydrogenase [Corynebacterium diphtheriae INCA 402]
gi|376290416|ref|YP_005162663.1| NADH dehydrogenase [Corynebacterium diphtheriae C7 (beta)]
gi|376293235|ref|YP_005164909.1| NADH dehydrogenase [Corynebacterium diphtheriae HC02]
gi|371582763|gb|AEX46429.1| NADH dehydrogenase [Corynebacterium diphtheriae INCA 402]
gi|372103812|gb|AEX67409.1| NADH dehydrogenase [Corynebacterium diphtheriae C7 (beta)]
gi|372110558|gb|AEX76618.1| NADH dehydrogenase [Corynebacterium diphtheriae HC02]
Length = 454
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/457 (24%), Positives = 192/457 (42%), Gaps = 64/457 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ + + ++G GFGGL+ L+ D + L+D++ +F+P+LY++ +G +
Sbjct: 8 PEGGRHHVVVIGSGFGGLFAVQNLK------DADVDITLIDRTNHHLFQPLLYQVATGIL 61
Query: 135 DAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ EIAP+ +LA V K V + V L + +EYD
Sbjct: 62 SSGEIAPQTRQVLAQQNNVHVLKAEVTDIDTESKTVVAD----------LDDYSKTIEYD 111
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKD-----SLIRV 247
L+++ GA AEFA T++DA + R + ER +D L+
Sbjct: 112 SLIVAAGAGQSYFGNDHFAEFAPGMKTIDDALELRARIIGAFERAEMCEDPKERERLLTF 171
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
+VG G +GVELA ++E + ++ E T TP N K++ VL
Sbjct: 172 VIVGAGPTGVELAGQLAEMAH-----RTLSGEYTQF---TPSN----AKIILLDGAPQVL 219
Query: 308 GYFVRCIRRVG--EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES--QIFEAD 363
F + + R E E + AI D+NS Y + ++ ++S +I+ A
Sbjct: 220 PPFGKRLGRTAQRELEKIGVTVKLNAIVT-GVDENSVTYKSTVDDSLHTIDSFCKIWSAG 278
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
+ +G K + + +R+ +P+N E L V +F +GD +L
Sbjct: 279 VAASPLG-KLVAEQLGVEVDRVGRVPVN--------EDLSVGDDKNVFVIGDMMSL---- 325
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAI-----NDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
LP AQVA Q ++ + A + ++RP F + + G M + R +A V
Sbjct: 326 -NRLPGVAQVAIQGGEYVAEQIAAEVEGRSSSERP--AFEYYDKGSMATVSRFNAVVKLG 382
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
VE + G IG L +L+ L +R SW
Sbjct: 383 KVE---VTGFIGWVMWLLVHLMFLVGFRNRATAAFSW 416
>gi|444432800|ref|ZP_21227950.1| NADH dehydrogenase [Gordonia soli NBRC 108243]
gi|443886426|dbj|GAC69671.1| NADH dehydrogenase [Gordonia soli NBRC 108243]
Length = 491
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 121/475 (25%), Positives = 196/475 (41%), Gaps = 81/475 (17%)
Query: 68 ASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY 127
+S T P ++ R+ I+G GFGGL+ A RL V L+ ++ +F+PMLY
Sbjct: 2 SSPTLQTPARR--RVVIIGSGFGGLFAAQRLRK------ADVDVTLIARTTHHLFQPMLY 53
Query: 128 ELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187
++ +G V EIAP T V K R + D V+ + LLE
Sbjct: 54 QVATGIVSEGEIAP-------ATRVILRKQRNTAVLLGDVFAVDLEQKTVT--SRLLERI 104
Query: 188 LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFGKD---- 242
+ YD L+++ GA+ AE+A T++ A + R L E+ D
Sbjct: 105 TVTPYDDLIIAAGADQSYFGNDHFAEYAPGMKTIDHALELRGRILGAFEQAELSDDPEER 164
Query: 243 -SLIRVAVVGCGYSGVELAATVSERLEE--KGIVQAINVETTICPTGTPGNREAALKVLS 299
L+ VVG G +GVELA +SE ++ KG + I+ PT EA + +L
Sbjct: 165 ARLLTFVVVGAGPTGVELAGQISEMSDKTLKGTFRNID------PT------EARVILLD 212
Query: 300 ARKVQL-----VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL-ELQPAIK 353
A L LG + RR+ ++ + + D + D ++ E +
Sbjct: 213 AAPAVLPPFGEKLG--TKAARRLESMGVEIQ------LNAMVVDVDYDGLVVKEKDGTTR 264
Query: 354 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPRI 410
+ESQ +W+ G + P +L + + L+ G+ + L + GHP +
Sbjct: 265 RIESQC-----KVWSAGVQ-----ASPLGKQLAEQSGVELDRAGRVKVLPDLSIPGHPNV 314
Query: 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP---LLPFRFQNLGEMMI 467
F +GD A+ D +P AQ A Q +A + A I + PF + + G M
Sbjct: 315 FVVGDMMAVDD-----VPGVAQGAIQGGRYAADAIKAEIKGQTPDQRKPFSYYDKGSMAT 369
Query: 468 LGRNDAAVS---PSFVEGVTLDGP---IGHSARKLAYLIRLPTDEHRLKVGVSWL 516
+ R A + P + +G +G A L YL+ +RL ++W
Sbjct: 370 VSRFSAVMQVPIPGTKKKFETEGYFAWLGWLALHLVYLVGF---RNRLNTLINWF 421
>gi|347759512|ref|YP_004867073.1| NADH dehydrogenase [Gluconacetobacter xylinus NBRC 3288]
gi|347578482|dbj|BAK82703.1| NADH dehydrogenase [Gluconacetobacter xylinus NBRC 3288]
Length = 451
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 166/408 (40%), Gaps = 63/408 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RI I+GGG GL A RL + V + + ++ LVD+S V+KPML+ +G
Sbjct: 26 QKFRIVIVGGGVAGLALATRLGNSVGRSGQA-EITLVDKSFAHVWKPMLHCFAAGTAANE 84
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + +F+ + L + P+ G V++++ ++YD +VL
Sbjct: 85 NDRISFMSQASRHHFEFWPGEITALDRTAKTISLAPIRDQMSGEVVVDA-RTLDYDAVVL 143
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257
S+G+ PG AE L DA + + R F + +A+VG G +G
Sbjct: 144 SIGSRANDFGTPGVAEHCLFIDNLVDANGFNDRFRMELLRAFANGQELDIAIVGGGATGT 203
Query: 258 ELAATVSERLEEKGI-----------VQAINVETTICPTGTPGNREAALKVLSARKVQLV 306
+LAA + + L+ + + + I P AA+K L A V +
Sbjct: 204 QLAAELHKALDLASLYSFGRQPPRLRITLLEAGPRILPAFPEAVSAAAVKQLEAIGVSVR 263
Query: 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366
+G V AD+N ++L+ + A L +
Sbjct: 264 VGAMVS-----------------------GADENG--FLLK--------DGSRVPATLRV 290
Query: 367 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
W G K P V ++ +L L+ GQ E +L V IFA+GD + + + +P
Sbjct: 291 WAAGVKA--PDV---TSKFGNLKLSRSGQLEVRPSLQVMEDDNIFAMGDCAFIAE---KP 342
Query: 427 LPATAQVAFQQAD-----FAGWNLWAAINDRPLLPFRFQNLGEMMILG 469
+ TAQ A QQA GW + PL F F N G ++ LG
Sbjct: 343 VAPTAQAARQQAHHLARVLPGW----IKSGNPLPAFAFHNKGAVVALG 386
>gi|94969553|ref|YP_591601.1| NADH dehydrogenase [Candidatus Koribacter versatilis Ellin345]
gi|94551603|gb|ABF41527.1| NADH dehydrogenase [Candidatus Koribacter versatilis Ellin345]
Length = 444
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 165/424 (38%), Gaps = 50/424 (11%)
Query: 98 LESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157
LE++ + Q+LL+D+ F+P+LY++ + + EIA +++ K
Sbjct: 19 LETVSHLKHQPVQILLLDRKNHHTFQPLLYQVATAGLSPAEIAAPLRSIVS-------KQ 71
Query: 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP 217
+ + ++ G + H TV E +EYD+LV++ GA A
Sbjct: 72 KNTEVLLAEVTGFDLARKIVH--TVDAE----IEYDYLVVAAGARHSYFAHDEWEPLAPG 125
Query: 218 FSTLEDACRVDRKL----SELERRN--FGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271
T+EDA + R++ E ER+ G I A+VG G +GVELA T+SE
Sbjct: 126 LKTVEDALEIRRRVLLAFEEAERQAALHGHHQDITFAIVGGGPTGVELAGTISE------ 179
Query: 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 331
V T P +V+ VL F + AS +Q
Sbjct: 180 ------VARTSLPRDFRNIDPTHTRVILIEAGPRVLAAFPE------DLSASAEQ----Q 223
Query: 332 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391
+ + + + + ++ P + + + LW G P R ++
Sbjct: 224 LHKLGVEVRTSTMVTQILPHEIHMGDVVLPTSVTLWAAGV------FASPLGRALSEQVD 277
Query: 392 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451
G+ L + HP +F +GD + +++ G+P+P A A Q F + +
Sbjct: 278 RAGRVPVQPDLTLPNHPEVFVIGDLATIKNPDGKPVPGVAPAAMQMGRFVAKTISDDLAH 337
Query: 452 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 511
RP F + + G + +GRN A G L G + +++ L +RL V
Sbjct: 338 RPRTNFVYNDKGNLATIGRNAAVAQ---FPGFKLTGYFAWLSWLFIHILFLIGFRNRLLV 394
Query: 512 GVSW 515
+ W
Sbjct: 395 MIEW 398
>gi|307726556|ref|YP_003909769.1| NADH dehydrogenase [Burkholderia sp. CCGE1003]
gi|307587081|gb|ADN60478.1| NADH dehydrogenase [Burkholderia sp. CCGE1003]
Length = 448
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 165/384 (42%), Gaps = 47/384 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 33 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 92
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
P+ G +L ++EYD LV+++G+ V GA EF+ T+ A R
Sbjct: 93 RLTLAPVVDDDGAELLPVR--VLEYDTLVIAIGSTTAFFGVKGAPEFSLALDTVSQAERF 150
Query: 228 DRKLSELERR---------------NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
++L R + + I+VA+VG G +GVEL+A E +
Sbjct: 151 RKRLIAACMRAEHQAHEPVESGPGTSPSSEPRIQVAIVGGGATGVELSA------ELRNT 204
Query: 273 VQAINVETTICPTGTPGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGA 331
Q ++ L L R V +VL R + + V +
Sbjct: 205 AQVLSAY--------------GLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAEL 248
Query: 332 IPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390
+ + + + + E+ P I+ + ADL +W G + P + +L LP+
Sbjct: 249 LGKLGVKLMTGETVAEVAPGIIRTASGKTVRADLTVWAAGIRA--PAIL---GQLDGLPV 303
Query: 391 NARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAI 449
N GQ TL + +FALGD +A + + +P AQ A QQA F L A +
Sbjct: 304 NRLGQLNVRRTLQTEIDDNVFALGDCAACPWPGNEKNVPPRAQAAHQQATFLLKALAARL 363
Query: 450 NDRPLLPFRFQNLGEMMILGRNDA 473
++RPL F +++ G ++ LG A
Sbjct: 364 DNRPLPEFTYRDFGSLVSLGHFSA 387
>gi|184155562|ref|YP_001843902.1| NADH dehydrogenase [Lactobacillus fermentum IFO 3956]
gi|183226906|dbj|BAG27422.1| NADH dehydrogenase [Lactobacillus fermentum IFO 3956]
Length = 407
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 172/403 (42%), Gaps = 53/403 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL L+ + + + ++ LVD++ L+E+ +G + +I+
Sbjct: 3 KVVVLGAGYAGLKVVHELQK---RANGQVEITLVDKNNYHYEATALHEVAAGTLPPSKIS 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD++ F +D V D TV L++ + YD+LV++LG
Sbjct: 60 YPVADIIKPAVTTFIQDEVTGFDLDDK-------------TVSLKNHDALSYDYLVIALG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL--ERRNFGKDSLIRVAVVGCGYSGVE 258
+ V GA E+A P + LE A + + ++ E + +++ V G G++G+E
Sbjct: 107 FVSETFGVEGAEEYALPMANLEQAEAIHTHILKMMDEYKKTQDPDYLKLIVCGAGFTGIE 166
Query: 259 LAATVSERLEEKGIVQAIN---VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
LA +++ +E +N ++ + EA+ ++L +L Y V ++
Sbjct: 167 LAGVLADGRKEYADRAGVNPSQIKIEVV--------EASTRLLPMFSEKLA-NYGVNVVK 217
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKP 373
+G V+ I + DK I + + ++WT G P
Sbjct: 218 GLG-----VELVTGARIQKVEPDK-----ITYTMGKDEEETTGTTTGKTIIWTTGVSGSP 267
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQ 432
++ E R RG++ + L V+GH + +GD +A+ GRP P TAQ
Sbjct: 268 IVQADEALKAR--------RGRSIPTDHLTVEGHDDAYIIGDVAAVMPPEGGRPYPTTAQ 319
Query: 433 VAFQQADFAGWNLWAAINDRPLL--PFRFQNLGEMMILGRNDA 473
+A + +L I + L PF +++LG + +G A
Sbjct: 320 IALGMGKYVAEDLANRIKNGSQLAKPFVYKSLGTVASVGNTRA 362
>gi|357404646|ref|YP_004916570.1| NADH dehydrogenase [Methylomicrobium alcaliphilum 20Z]
gi|351717311|emb|CCE22976.1| NADH dehydrogenase [Methylomicrobium alcaliphilum 20Z]
Length = 435
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 172/405 (42%), Gaps = 57/405 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I I+GGG GL A L + + + ++ L+D S ++KP+L+E+ +G +D E
Sbjct: 10 KILIVGGGAAGLELATTLGNKLGKAGL-AEINLIDASSTHIWKPLLHEVAAGTLDETEQV 68
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVN---GPMACTHGGTVLLESGLIVEYDWLVL 197
D LA F+ R+ + + + P G ++ E +YD LV+
Sbjct: 69 ----DYLAQAYRSHFRFRLGKMAGLNRIKKEVYLSPTYSDSGEELIPERSF--KYDTLVM 122
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LER---RNFGKDSLIRVAVVGC 252
++G+ + G AE T A + ++L E ++R + KD + +A+VG
Sbjct: 123 AVGSVSNTFNIKGVAEHCMFLDTTSQAFKFQKQLVETYIKRHVSKGGNKDKPLSIAIVGA 182
Query: 253 GYSGVELAA---TVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV-LG 308
G +GVEL+A V+ L G+ QA +V+ TI T K+ A + QLV L
Sbjct: 183 GATGVELSAELHEVTHLLNVYGLDQAGDVKITIIEAATQLLPALPTKLAHATQQQLVKLN 242
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
++ RRV E + I + + ADL +W
Sbjct: 243 IDLKLGRRVTEVS---------------------------KVGITTHDGEFIPADLKVWA 275
Query: 369 VGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGR 425
G ++ P+ ++ L N Q D+TL P IFA+GD +A +
Sbjct: 276 AG-------IKAPDWLQQIDGLETNRINQLVVDDTLQT-ADPTIFAIGDCAACSWPGHEQ 327
Query: 426 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 470
+P AQ A QQA ++ + + + F + + G ++ LG+
Sbjct: 328 NVPPRAQAAHQQASTVAKSIVNRLQGKDPVKFVYHDYGSLVSLGK 372
>gi|377563506|ref|ZP_09792854.1| putative NADH dehydrogenase [Gordonia sputi NBRC 100414]
gi|377529275|dbj|GAB38019.1| putative NADH dehydrogenase [Gordonia sputi NBRC 100414]
Length = 436
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 185/459 (40%), Gaps = 77/459 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAW 137
KP + I+G GF G++ A RL+ K+P V ++D+ +F+P+LY+ +G +
Sbjct: 4 KPHVVIIGAGFAGVHAARRLK-------KEPVSVTVIDRGTSHLFQPLLYQCATGILSEG 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I LL ++ +L +D + V + G S + YD+LV+
Sbjct: 57 AITSPIRHLLRRQ-----RNVNVVLGEADDIDVAAKVLTILGAD---GSPTTISYDYLVV 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------LSELERRNFGKDSLIRVAVVG 251
G A E + TL+DA + R+ ++E + + + AV G
Sbjct: 109 GTGMRTAYHGCDDAIENSIGMKTLDDALAIRRQVLGAFEIAETLTDPDERRAWLTFAVAG 168
Query: 252 CGYSGVELA------ATVSERLEEKGI------VQAINVETTICPTGTPGNREAALKVLS 299
G +GVE+A AT+S E I V + + P+ + + A + L
Sbjct: 169 AGPTGVEIAGQIRELATLSLGREFDSIDPTEARVLLFHGSDRVLPSFSESLSKRAQRTLD 228
Query: 300 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359
V+ LG V VGE K ++G E
Sbjct: 229 KIGVETHLGVHVV---DVGEDTVQTKDKKTG-------------------------ELTT 260
Query: 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419
FEA LWT G + + P L + + G+ + L V+GHP +F GD+S+L
Sbjct: 261 FEARTTLWTAGVEAV-PFARTLAKAL-GVEQDRSGRIPVRDDLSVEGHPDVFVAGDTSSL 318
Query: 420 RDSSGRPLPATAQVAFQQADFAGW---NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 476
+ LP A+VA Q G +L A ++R PF + +LG + R +A V
Sbjct: 319 NN-----LPGVAEVAMQGGRHVGGVIADLVAGQSERK--PFTYHDLGNAAYIARRNAIVQ 371
Query: 477 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+E + G +G A + ++ L +R+ V+W
Sbjct: 372 SGPLE---MSGTLGWLAWGVIHVAFLAGVRNRMGAMVTW 407
>gi|385812417|ref|YP_005848808.1| NADH dehydrogenase [Lactobacillus fermentum CECT 5716]
gi|299783314|gb|ADJ41312.1| NADH dehydrogenase [Lactobacillus fermentum CECT 5716]
Length = 407
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 172/403 (42%), Gaps = 53/403 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL L+ + + + ++ LVD++ L+E+ +G + +I+
Sbjct: 3 KVVVLGAGYAGLKVVHELQK---RANGQVEITLVDKNNYHYEATALHEVAAGTLPPSKIS 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD++ F +D V D TV L++ + YD+LV++LG
Sbjct: 60 YPVADIIKPAVTTFIQDEVTGFDLDDK-------------TVSLKNHDALSYDYLVIALG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL--ERRNFGKDSLIRVAVVGCGYSGVE 258
+ V GA E+A P + LE A + + ++ E + +++ V G G++G+E
Sbjct: 107 FVSETFGVEGAEEYALPMANLEQAEAIHTHILKMMDEYKKTQDPDYLKLIVCGAGFTGIE 166
Query: 259 LAATVSERLEEKGIVQAIN---VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
LA +++ +E +N ++ + EA+ ++L +L Y V ++
Sbjct: 167 LAGVLADGRKEYADRAGVNPSQIKIEVV--------EASTRLLPMFSEKLA-NYGVNVVK 217
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKP 373
+G V+ I + DK I + + ++WT G P
Sbjct: 218 GLG-----VELVTGARIQKVEPDK-----ITYTMGKDEEETTGTTTGKTIIWTTGVSGSP 267
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQ 432
++ E R RG++ + L V+GH + +GD +A+ GRP P TAQ
Sbjct: 268 IVQADEALKAR--------RGRSIPTDHLTVEGHDDAYIIGDVAAVMPPEGGRPYPTTAQ 319
Query: 433 VAFQQADFAGWNLWAAINDRPLL--PFRFQNLGEMMILGRNDA 473
+A + +L I + L PF +++LG + +G A
Sbjct: 320 IALGMGKYVAEDLANRIKNGSQLAKPFVYKSLGTVASVGNTRA 362
>gi|260662965|ref|ZP_05863858.1| NADH dehydrogenase [Lactobacillus fermentum 28-3-CHN]
gi|260552586|gb|EEX25586.1| NADH dehydrogenase [Lactobacillus fermentum 28-3-CHN]
Length = 407
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 172/403 (42%), Gaps = 53/403 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL L+ + + + ++ LVD++ L+E+ +G + +I+
Sbjct: 3 KVVVLGAGYAGLKVVHELQK---RANGQVEITLVDKNNYHYEATALHEVAAGTLPPSKIS 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD++ F +D V D TV L++ + YD+LV++LG
Sbjct: 60 YPVADIIKPAVTTFIQDEVTGFDLDDK-------------TVSLKNHDALSYDYLVIALG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL--ERRNFGKDSLIRVAVVGCGYSGVE 258
+ V GA E+A P + LE A + + ++ E + +++ V G G++G+E
Sbjct: 107 FVSETFGVEGAEEYALPMANLEQAEAIHTHILKMMDEYKKTQDPDYLKLIVCGAGFTGIE 166
Query: 259 LAATVSERLEEKGIVQAIN---VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315
LA +++ +E +N ++ + EA+ ++L +L Y V ++
Sbjct: 167 LAGVLADGRKEYADRAGVNPSQIKIEVV--------EASTRLLPMFSEKLA-NYGVNVVK 217
Query: 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKP 373
+G V+ I + DK I + + ++WT G P
Sbjct: 218 GLG-----VELVTGARIQKVEPDK-----ITYTMGKDEEETTGTTTGKTIIWTTGVSGSP 267
Query: 374 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQ 432
++ E R RG++ + L V+GH + +GD +A+ GRP P TAQ
Sbjct: 268 IVQADEALKAR--------RGRSIPTDHLTVEGHDDAYIIGDVAAVMPPEGGRPYPTTAQ 319
Query: 433 VAFQQADFAGWNLWAAINDRPLL--PFRFQNLGEMMILGRNDA 473
+A + +L I + L PF +++LG + +G A
Sbjct: 320 IALGMGKYVAEDLANRIKNGSQLAKPFVYKSLGTVASVGNTRA 362
>gi|424919003|ref|ZP_18342367.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM597]
gi|392855179|gb|EJB07700.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM597]
Length = 421
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 179/429 (41%), Gaps = 80/429 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
+V LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 KVTLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 EVTGVD-----SGARTVSLRNGMTLGYDTLVLATGATHAYFGRDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKL------SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269
TLEDA + R++ +E+E +D+L+ +VG G +GVELA ++E
Sbjct: 124 --LKTLEDATTIRRRVLLAFEKAEMESDPAVRDALLTFTIVGAGPTGVELAGIIAELAHF 181
Query: 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 328
+ N++T RK ++VL V RV F +
Sbjct: 182 TLPKEFRNIDT--------------------RKTRVVL---VEAGPRVLPTFAEELSAYA 218
Query: 329 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388
A+ + + + + + + + + ++W G P R ++
Sbjct: 219 QTALEKLGVEIHLGRPVTDCNADGVKIGETFVASRTIVWAAGV------TASPAARWLNV 272
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
P + G+ ++ L G P +F +GD++++ G+P+P A A QQ + + A
Sbjct: 273 PADRAGRVVVEKDLSAPGLPDVFVIGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRAR 332
Query: 449 INDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 507
++ + PFR+++ G + +G++ A + ++ L G I LA++ L
Sbjct: 333 LSGKSAPAPFRYRHQGSLATIGQSAAIIDFGRIK---LKGWIAWWIWGLAHIYFLIGTRS 389
Query: 508 RLKVGVSWL 516
R V SWL
Sbjct: 390 RFSVAWSWL 398
>gi|38233807|ref|NP_939574.1| NADH dehydrogenase [Corynebacterium diphtheriae NCTC 13129]
gi|38200068|emb|CAE49744.1| NADH dehydrogenase [Corynebacterium diphtheriae]
Length = 454
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 114/457 (24%), Positives = 191/457 (41%), Gaps = 64/457 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ + + ++G GFGGL+ L+ D + L+D++ +F+P+LY++ +G +
Sbjct: 8 PEGGRHHVVVIGSGFGGLFAVQNLK------DADVDITLIDRTNHHLFQPLLYQVATGIL 61
Query: 135 DAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ EIAP+ +LA V K V + V L + +EYD
Sbjct: 62 SSGEIAPQTRQVLAQQNNVHVLKAEVTDIDTESKTVVAD----------LDDYSKTIEYD 111
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKD-----SLIRV 247
L+++ GA AEFA T++DA + R + ER +D L+
Sbjct: 112 SLIVAAGAGQSYFGNDHFAEFAPGMKTIDDALELRARIIGAFERAEMCEDPKERERLLTF 171
Query: 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
+VG G +GVELA ++E + ++ E T TP N K++ VL
Sbjct: 172 VIVGAGPTGVELAGQLAEMAH-----RTLSGEYTQF---TPSN----AKIILLDGAPQVL 219
Query: 308 GYFVRCIRRVG--EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES--QIFEAD 363
F + + R E E + AI D+NS Y + ++ ++S +I+ A
Sbjct: 220 PPFGKRLGRTAQRELEKIGVTVKLNAIVT-GVDENSVTYKSTVDDSLHTIDSFCKIWSAG 278
Query: 364 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423
+ +G K + + +R +P+N E L V +F +GD +L
Sbjct: 279 VAASPLG-KLVAEQLGVEVDRAGRVPVN--------EDLSVGDDKNVFVIGDMMSL---- 325
Query: 424 GRPLPATAQVAFQQADFAGWNLWAAI-----NDRPLLPFRFQNLGEMMILGRNDAAVSPS 478
LP AQVA Q ++ + A + ++RP F + + G M + R +A V
Sbjct: 326 -NRLPGVAQVAIQGGEYVAEQIAAGVEGRSSSERP--AFEYYDKGSMATVSRFNAVVKLG 382
Query: 479 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
VE + G IG L +L+ L +R SW
Sbjct: 383 KVE---VTGFIGWVMWLLVHLMFLVGFRNRATAAFSW 416
>gi|314936839|ref|ZP_07844186.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Staphylococcus hominis subsp. hominis C80]
gi|313655458|gb|EFS19203.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Staphylococcus hominis subsp. hominis C80]
Length = 402
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/409 (22%), Positives = 167/409 (40%), Gaps = 62/409 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL +L+ + ++ ++ LV++++ L+E +G ++
Sbjct: 3 QNRKKVLVLGAGYAGLQAVTKLQKEISANE--AEITLVNKNKYHYEATWLHEASAGTLNY 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++ ++ V F V + + + THG I EYD LV
Sbjct: 61 EDLIYPIESVIDKNKVNFINAEVTKIDRNAK-----KVETTHG---------IFEYDILV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG-----KDSLIRVAVVG 251
++LG E + + G E AF + A + R + E + N+ ++ + + V G
Sbjct: 107 VALGFESETFGINGMKEHAFQIENIHTARELSRHI-EDKFANYAASKEKDENDLAILVGG 165
Query: 252 CGYSGVELAATVSERLEE----KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307
G++G+E +++R+ E G+ Q N C P L + S V V+
Sbjct: 166 AGFTGIEFLGELTDRIPELCNKYGVDQ--NKVRITCVEAMP----KILPMFSENLVNYVV 219
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
Y R EF+ P +A ++ K Q Q EA+ +W
Sbjct: 220 NYLEE---RGVEFKIGT--------PIVACNEKGFKVKTNDQ-------EQQLEANTAVW 261
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSG 424
G + ++L + RG+ T + L + GH IF +GD SA +
Sbjct: 262 AAGVR---------GSQLMEESFEGVKRGRIVTKQDLTIDGHDDIFVIGDVSAFIPAGEE 312
Query: 425 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
RPLP TAQ+A QQ N+ +N + F + + G + LG +D
Sbjct: 313 RPLPTTAQIAMQQGAHVAKNIENILNGQATTDFEYIDRGTVCSLGSHDG 361
>gi|300690853|ref|YP_003751848.1| NADH dehydrogenase [Ralstonia solanacearum PSI07]
gi|299077913|emb|CBJ50552.1| NADH dehydrogenase [Ralstonia solanacearum PSI07]
gi|344167305|emb|CCA79515.1| NADH dehydrogenase [blood disease bacterium R229]
Length = 441
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 177/429 (41%), Gaps = 50/429 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRAA 96
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ G VL E + YD LVL++G+ VPG AE A A R
Sbjct: 97 KIITVSGCIDADGTEVLPERA--IAYDVLVLAIGSVTHFFGVPGTAEHAIALDAASQAER 154
Query: 227 VDRKL-SELERRNFG---KDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282
RKL S R G + + +A+VG G +GVEL+A + N +
Sbjct: 155 FRRKLISACMRAQNGVGDARAQVDIAIVGAGATGVELSAELR------------NTAHVL 202
Query: 283 CPTGTPGNREAALKVLSAR---KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339
G L L R ++ L+ G R + V + + + D
Sbjct: 203 AAYG--------LHKLDPRRDIRIHLIEG----SPRILAALSERVSAETTKLLHKLNVDV 250
Query: 340 NSDKYILELQ-PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 398
+ + ++E+ A+ + ADL +W G + P LP+N GQ
Sbjct: 251 ITGERVIEVTGSAVNTGSGKSIPADLTVWAAGIRA------PSILGELGLPVNKLGQVVV 304
Query: 399 DETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 457
TL +G I+A GD +S + +P AQ A QQA + L + +P+ PF
Sbjct: 305 SRTLQAEGDDAIYAFGDCASCPWPEASASVPPRAQAAHQQATYLYKALCRRLEGKPVEPF 364
Query: 458 RFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSW 515
F++LG ++ LG A G + G IG + + RL T +R+ V +
Sbjct: 365 GFKDLGSLVSLGHFSAV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHG 417
Query: 516 LTKSAIDSV 524
+ A+D+V
Sbjct: 418 FVRMALDTV 426
>gi|427722309|ref|YP_007069586.1| NADH dehydrogenase (ubiquinone) [Leptolyngbya sp. PCC 7376]
gi|427354029|gb|AFY36752.1| NADH dehydrogenase (ubiquinone) [Leptolyngbya sp. PCC 7376]
Length = 459
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 191/460 (41%), Gaps = 73/460 (15%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P K ++ I+GGGFGGLY A L + V L+D+ +F+P+LY++ +G +
Sbjct: 11 PKTDKHKVVIIGGGFGGLYAAKTLGK-----NGAVDVTLIDKRNFHLFQPLLYQVATGTL 65
Query: 135 DAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+IA +L+ N D+V+ + P TV++ G V+YD
Sbjct: 66 SPADIASPLRGILSRNENTHVLLDQVQDVDPETK-------------TVVMTEG-TVQYD 111
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFGKDSLIRV 247
LV++ G +A T+EDA + ++ +E E + + +
Sbjct: 112 SLVVATGVSHHYFGNDQWKPYAPGLKTVEDALEIRHRIFAAFEAAEKETDPALQQAWLTF 171
Query: 248 AVVGCGYSGVELAATVSE----------RLEEKGIVQAINVETT--ICPTGTPGNREAAL 295
++G G +GVELA +SE R + + I +E + P P
Sbjct: 172 VIIGGGPTGVELAGAISEIAYSVLKKDFRKIDTAKAKVILLEGMDRVLPPYDPS------ 225
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
LSA+ Q + +G V S + NI D+ + K +G
Sbjct: 226 --LSAKAQQ--------SLESLG-----VDVQTSSLVTNIEGDRVTVK---------QGE 261
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E A ++W G K + +RL D L+ G+ + L V+G+P +F +GD
Sbjct: 262 EQLELHAKTIVWAAGVKA-SGMGKVLGDRL-DANLDRAGRVIVEPNLSVEGYPDVFVIGD 319
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 475
+ + RPLP A VA Q+ + + I + PFR+ +G + ++G+N A V
Sbjct: 320 LANFPHQNERPLPGVAPVAMQEGQYVAKLIKQRIQGNEMAPFRYTEVGSLAVIGQNAAVV 379
Query: 476 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 515
+V+ G + A++ L ++++ V + W
Sbjct: 380 DLGYVK---FSGFLAWLVWIFAHVYYLIEFDNKMVVMIQW 416
>gi|251800227|ref|YP_003014958.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. JDR-2]
gi|247547853|gb|ACT04872.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. JDR-2]
Length = 392
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 154/385 (40%), Gaps = 77/385 (20%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ ++ L++++ L+ L V+ +A LL + D V + P
Sbjct: 28 EEAEITLINKTPYHQIITELHRLAVSGVNEGNVALPLDKLLKGKSINLVVDTVDNIDPEK 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA-- 224
V L V+YD LV++LG E +PG E + ++E+A
Sbjct: 88 K-------------QVKLAGNGTVKYDQLVVALGGETAFFGIPGLEENSLTLKSVEEAKA 134
Query: 225 --CRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERL----EEKGI----VQ 274
+ +++ + D+ I + G G +G+EL + + L E+ G+ +
Sbjct: 135 VSAHIQNRIAAYAQSKNKADATIVIG--GGGLTGIELIGEIVDMLPKWCEQYGVDKSEIS 192
Query: 275 AINVETTICPT---GTPGNR-EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 330
N+E PT G P + E A L+ R V L++G V ++
Sbjct: 193 LYNIEA--GPTILMGFPADLLERAKSSLTNRGVNLIMGVAVTEVQ--------------- 235
Query: 331 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDL 388
+K +L+ + E + +WT G P++ + NR
Sbjct: 236 ----------GNKVMLK--------DGNSIETNTFVWTGGVTGNPVVANCGIEVNR---- 273
Query: 389 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448
G+A E L H IF GD++ + GRP P +AQ+A+Q ++ G+NL+A
Sbjct: 274 -----GRASVTEFLQSTSHSDIFLAGDNAFVMGPEGRPYPPSAQIAWQMGEYIGYNLFAQ 328
Query: 449 INDRPLLPFRFQNLGEMMILGRNDA 473
P+ F+F N G + LGR DA
Sbjct: 329 AKGLPMKSFQFVNSGVLASLGRKDA 353
>gi|378764042|ref|YP_005192658.1| putative NADH dehydrogenase [Sinorhizobium fredii HH103]
gi|365183670|emb|CCF00519.1| putative NADH dehydrogenase [Sinorhizobium fredii HH103]
Length = 435
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 166/418 (39%), Gaps = 82/418 (19%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
+++PRI ILG GFGGL A+ L + P V ++D+ +F+P+LY++ + +
Sbjct: 20 ERRPRIVILGAGFGGLNAAMSLR-------RAPVDVTVIDRRNYHLFQPLLYQVATAGLS 72
Query: 136 AWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L+ DRV+ A ++ V YD+
Sbjct: 73 PAQIAMPIRRILSRQANATVLMDRVE--------------AVDVAAKFVVTRNRRVAYDY 118
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFGKD-----SLIRVA 248
LV++ GA A+ A T+ DA + R LS ER D L+
Sbjct: 119 LVIATGARHTYFGNDAWADHAPGLKTIADATAIRARILSAFERAEVTDDPQSRKRLLTFV 178
Query: 249 VVGCGYSGVELAATVSERLEEKGIVQ-------------AINVETTICPTGTPGNREAAL 295
VVG G +GVELA + E L K IV+ I I PT P A
Sbjct: 179 VVGGGPTGVELAGAIVE-LARKAIVRDFRRIDASSARVVLIEAGERILPTMPPALSARAC 237
Query: 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355
+ L ++VLG + V E + S + G
Sbjct: 238 EQLEGLGAEIVLG------KAVAECDGSGVRLADG------------------------- 266
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
++I A VLW G + + P + G+ + DE L GH +F +GD
Sbjct: 267 -TEIGSA-CVLWAAGV------MASRAAKWIGAPADRAGRVKVDECLNPPGHDEVFVIGD 318
Query: 416 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 473
++ D++GRP+P A A Q +A + + R PFR+++ G + +GR A
Sbjct: 319 TALAIDAAGRPVPGVAPAAKQMGRYAARAILDHMAGRRAAPFRYRDFGNLATIGRKAA 376
>gi|320334750|ref|YP_004171461.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Deinococcus maricopensis DSM 21211]
gi|319756039|gb|ADV67796.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Deinococcus maricopensis DSM 21211]
Length = 382
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 145/370 (39%), Gaps = 67/370 (18%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVD-AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
V L+DQ+ V+ L+E + + I P LLANTGV+F + DH+
Sbjct: 27 VTLIDQNPYHVYDTRLHEAAAHNTNVTLPIEP----LLANTGVKF------QVASIDHVD 76
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
++ T G L YD LV++LG+ +PG E A L DA +
Sbjct: 77 LDAKAVHTKDGQQL-------SYDTLVIALGSITNFYKIPGLQEHASELKELSDAAEIYN 129
Query: 230 KLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLE----EKGI----VQAINVETT 281
+ + +F + I V G G +GVEL +++R E E G+ + +
Sbjct: 130 FVQRAAKPDFKGNRDIIVG--GAGLTGVELVTELAKRNEAISKETGLPKFNIYLVEAAPV 187
Query: 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVK--QPESGAIPNIAADK 339
I P R L +L +Q++ + + +G E VK PE G
Sbjct: 188 ILPIVEEALRAKTLDILRDYGIQVLTSH-----KLLGATETGVKVGTPEDG--------- 233
Query: 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 399
+ + V+WT G + R + G+ D
Sbjct: 234 -----------------ERTIDGGKVIWTGGIMAV------DRVRGSKIEKGPAGRLLVD 270
Query: 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 459
+TL + +P +F LGD + + G+P+P TAQ A Q+ G NL + L+P+
Sbjct: 271 KTLRLPAYPDVFVLGDLALATNQDGKPVPTTAQHAGQEGRLMGENLMRLVRGENLMPYEP 330
Query: 460 QNLGEMMILG 469
GE + LG
Sbjct: 331 YTQGEFISLG 340
>gi|288921530|ref|ZP_06415805.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Frankia sp. EUN1f]
gi|288347098|gb|EFC81400.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Frankia sp. EUN1f]
Length = 483
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 184/468 (39%), Gaps = 93/468 (19%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++P++ ++G G+ GL LE+ + + LV + ++ +L ++ +G+++
Sbjct: 48 RRRPKVIVVGSGYAGLGVLQYLEARL--PAHAADLALVSPVDHLLYTSLLPQVAAGDIEP 105
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG-VNGPMACTHGGTVLLESGL--IVEYD 193
+A L T HLG V TVL +G+ + +D
Sbjct: 106 RHLAVSVRGTLRRT--------------VSHLGHVTEIDPAARNVTVLSRAGVPFTLAWD 151
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA-----------CRVDRKLSELERRNFGKD 242
LVL+ GA + +PG AE L +A D + E ERR
Sbjct: 152 RLVLAPGAHTRTFDIPGLAEHGLGMKNLAEAVFLRDHVLRQMAYADAAVHEAERRAH--- 208
Query: 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT--------ICPTGTPGNRE-- 292
VVG GY+G ELAA + R K + Q + + + P P E
Sbjct: 209 --CTFVVVGAGYTGTELAAQM-RRFTMKALAQFPRLRSDQVRWLLLDLAPKVLPELDEHL 265
Query: 293 --AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350
A +VL R V++ L V+ +R P+S
Sbjct: 266 GIGASRVLRERGVEVRLKTSVQQVR-----------PDS--------------------- 293
Query: 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 410
+ ++ ++W G P P V RG+ DE V GH +
Sbjct: 294 -VTLTSGEVIATHTLVWCAGVTPN-PLVSSFGAE------TVRGRLVVDERFRVPGHAGM 345
Query: 411 FALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 468
FALGD++A+ DS+ G P TAQ A +Q AG N+ A++ + P++ ++LG ++ L
Sbjct: 346 FALGDAAAVPDSTRGGVPAGQTAQNAVRQGTAAGRNIAASLGYGAMHPYQHRDLGFVVDL 405
Query: 469 GRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 516
G DA +P G+ L G + +L+ L +R V WL
Sbjct: 406 GGADAVANPV---GLRLSGLPAAVVTRAYHLLALKAGTNRAYVAADWL 450
>gi|167625943|ref|YP_001676237.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella halifaxensis HAW-EB4]
gi|167355965|gb|ABZ78578.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella halifaxensis HAW-EB4]
Length = 402
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 166/421 (39%), Gaps = 75/421 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA-WEI 139
RI I+GGG GL A L V D +V+LV+ +KP +E+ +G D+ +
Sbjct: 3 RIVIVGGGAAGLEIASLLGRSVNSQD---EVILVEGETHHYWKPRFHEIAAGTFDSDLDS 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGV---NGPMACTHGGTVLLESGLIVEYDWLV 196
F+ N + + + + L V NG M ++YD+L+
Sbjct: 60 LCYFSHGAKNGYMHYQAWMTDINRATKKLAVRKPNGEMDT-------------LDYDYLI 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG 256
+++GA GA E T A ++S L R GKD I + VG G +G
Sbjct: 107 IAIGAISNDFATQGAKEHCLFLDTSAQARDSWHQISSLLRS--GKDCTINI--VGAGATG 162
Query: 257 VELAA---TVSERLEEKGIVQAINVETT-----ICPTGTPGNREAALKVLSARKVQLVLG 308
+ELAA VS L + +N+ + P G E AL L K+ ++L
Sbjct: 163 LELAAELAKVSAELSDNPYAAWLNINLIEAADRVLPNGPVKMSEQALLRLEKYKINVMLN 222
Query: 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
R+ EA G Q+ AD+ W
Sbjct: 223 ------TRIASVEADRMTTSDG---------------------------QVLNADVQFWA 249
Query: 369 VGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426
G ++ P+ + L N+ Q ++TL IFALGD +A+ + G
Sbjct: 250 AG-------IKAPDWLKEIGGLQSNSLNQLVVEQTLATTFDSSIFALGDCAAIPQADGSQ 302
Query: 427 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 486
+P AQ A + A +L A ++ +PL PF + + G ++ +G N A+S + + L
Sbjct: 303 VPPKAQAANRAAVHLAKSLVAHLSGKPLKPFVYNDGGMVVAIGHN-FAISTMMNDRLILK 361
Query: 487 G 487
G
Sbjct: 362 G 362
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,518,312,816
Number of Sequences: 23463169
Number of extensions: 370615966
Number of successful extensions: 910011
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 5872
Number of HSP's that attempted gapping in prelim test: 888070
Number of HSP's gapped (non-prelim): 14468
length of query: 538
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 390
effective length of database: 8,886,646,355
effective search space: 3465792078450
effective search space used: 3465792078450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)