BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009310
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 113/491 (23%), Positives = 189/491 (38%), Gaps = 96/491 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILG G+G + L D KK V ++ F+F P+L G VD
Sbjct: 42 KPNVLILGSGWGAI------SFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKS 95
Query: 139 IAPRFAD--LLANTGVQFFK--------DR-----------VKLLCPSDHLGVNGPMACT 177
I + L V +++ DR +L P +HLG++
Sbjct: 96 IIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAE 155
Query: 178 HGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELER 236
++YD+L+ ++GAEP +PG ++ + ++ + R + LE+
Sbjct: 156 ------------IKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEK 203
Query: 237 RNF------GKDSLIRVAVVGCGYSGVELAATVSERLEE--KGIVQAINVETTI-CPTGT 287
N + L+ + VVG G +GVE A + + + + + + A+ E I
Sbjct: 204 ANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEAL 263
Query: 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347
P K LS+ + ++ R + KQ +A K+ D I E
Sbjct: 264 PIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQL-------LAKTKHEDGKITE 316
Query: 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 407
+ ++W G+K P + ++ + + RG A D L VKG
Sbjct: 317 ----------ETIPYGTLIWATGNKA-RPVITDLFKKIPEQNSSKRGLAVND-FLQVKGS 364
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL--WAAI---------------- 449
IFA+GD++ +G LP TAQVA Q+A++ N A I
Sbjct: 365 NNIFAIGDNAF----AG--LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDL 418
Query: 450 --NDRPLLPFRFQNLGEMMILG--RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 505
+ PF++ +LG + LG R A + T G + ++ YL + +
Sbjct: 419 LFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSA 478
Query: 506 EHRLKVGVSWL 516
RLKV W+
Sbjct: 479 RSRLKVFFDWI 489
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 113/491 (23%), Positives = 189/491 (38%), Gaps = 96/491 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILG G+G + L D KK V ++ F+F P+L G VD
Sbjct: 11 KPNVLILGSGWGAI------SFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKS 64
Query: 139 IAPRFAD--LLANTGVQFFK--------DR-----------VKLLCPSDHLGVNGPMACT 177
I + L V +++ DR +L P +HLG++
Sbjct: 65 IIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAE 124
Query: 178 HGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELER 236
++YD+L+ ++GAEP +PG ++ + ++ + R + LE+
Sbjct: 125 ------------IKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEK 172
Query: 237 RNF------GKDSLIRVAVVGCGYSGVELAATVSERLEE--KGIVQAINVETTI-CPTGT 287
N + L+ + VVG G +GVE A + + + + + + A+ E I
Sbjct: 173 ANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEAL 232
Query: 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347
P K LS+ + ++ R + KQ +A K+ D I E
Sbjct: 233 PIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQL-------LAKTKHEDGKITE 285
Query: 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 407
+ ++W G+K P + ++ + + RG A D L VKG
Sbjct: 286 ----------ETIPYGTLIWATGNKA-RPVITDLFKKIPEQNSSKRGLAVND-FLQVKGS 333
Query: 408 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL--WAAI---------------- 449
IFA+GD++ +G LP TAQVA Q+A++ N A I
Sbjct: 334 NNIFAIGDNAF----AG--LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDL 387
Query: 450 --NDRPLLPFRFQNLGEMMILG--RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 505
+ PF++ +LG + LG R A + T G + ++ YL + +
Sbjct: 388 LFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSA 447
Query: 506 EHRLKVGVSWL 516
RLKV W+
Sbjct: 448 RSRLKVFFDWI 458
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 110/258 (42%), Gaps = 36/258 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LGG FG L A L+ LV K V ++++S F+P L + G D E+
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGS---KADVKVINKSRFSYFRPALPHVAIGVRDVDELK 59
Query: 141 PRFADLLANTGVQFFKDRV-KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
++ L G+QF + V K+ S + P G++ E EYD++++ +
Sbjct: 60 VDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKP-----DGSMAEE-----EYDYVIVGI 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG----------------KDS 243
GA ++V G ++ + E A ++ KL + N ++
Sbjct: 110 GAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-----TPGNREAALKVL 298
+ A C E++ + ++KG++ ++V T P +P +R+A +
Sbjct: 170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHV-TVFSPGEYLSDLSPNSRKAVASIY 228
Query: 299 SARKVQLVLGYFVRCIRR 316
+ ++LV + ++ IR
Sbjct: 229 NQLGIKLVHNFKIKEIRE 246
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 32/187 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK--PMLYELLSGEVDAWEI 139
+ I+G G G+ A L + W+ + + LV + P+ L+G+ A +
Sbjct: 6 VVIVGTGLAGVEVAFGLRASGWEGN----IRLVGDATVIPHHLPPLSKAYLAGKATAESL 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R D A +Q LL + +N V+L G ++YD LVL+
Sbjct: 62 YLRTPDAYAAQNIQ-------LLGGTQVTAINRDRQ-----QVILSDGRALDYDRLVLAT 109
Query: 200 GAEPK-LDVVPGAAEFAFPF---STLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
G P+ L V GA A F TLEDA E RR D+ R+ V+G GY
Sbjct: 110 GGRPRPLPVASGAVGKANNFRYLRTLEDA--------ECIRRQLIADN--RLVVIGGGYI 159
Query: 256 GVELAAT 262
G+E+AAT
Sbjct: 160 GLEVAAT 166
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 32/187 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF--VFKPMLYELLSGEVDAWEI 139
+ I+G G G+ A L + W+ + + LV + P+ L+G+ A +
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWEGN----IRLVGDATVIPHHLPPLSKAYLAGKATAESL 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R D A +Q LL + +N V+L G ++YD LVL+
Sbjct: 63 YLRTPDAYAAQNIQ-------LLGGTQVTAIN-----RDRQQVILSDGRALDYDRLVLAT 110
Query: 200 GAEPK-LDVVPGAAEFAFPF---STLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255
G P+ L V GA A F TLEDA E RR D+ R+ V+G GY
Sbjct: 111 GGRPRPLPVASGAVGKANNFRYLRTLEDA--------ECIRRQLIADN--RLVVIGGGYI 160
Query: 256 GVELAAT 262
G+E+AAT
Sbjct: 161 GLEVAAT 167
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 57/245 (23%)
Query: 192 YDWLVLSLGAEPKLDVVPGA--AEFAFPF-STLEDACRVD------RKLSELERRNFGKD 242
YD L+ + G++P L + GA E + F +TLE+ V +++LE ++
Sbjct: 138 YDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKD---- 193
Query: 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAAL--KVLSA 300
+ RVAVVG GY GVELA + +E ++ ++ C G L K +
Sbjct: 194 -IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT----CLAGYYDRDLTDLMAKNMEE 248
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+QL G V+ + +G + I DKN +
Sbjct: 249 HGIQLAFGETVKEV------------AGNGKVEKIITDKNE------------------Y 278
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+ D+V+ VG + P+ N ++ DL N + + P ++A+GD + +
Sbjct: 279 DVDMVILAVGFR---PNTTLGNGKI-DLFRNGAFLVNKRQETSI---PGVYAIGDCATIY 331
Query: 421 DSSGR 425
D++ R
Sbjct: 332 DNATR 336
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 57/245 (23%)
Query: 192 YDWLVLSLGAEPKLDVVPGA--AEFAFPF-STLEDACRVD------RKLSELERRNFGKD 242
YD L+ + G++P L + GA E + F +TLE+ V +++LE ++
Sbjct: 138 YDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKD---- 193
Query: 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAAL--KVLSA 300
+ RVAVVG GY GVELA + +E ++ ++ C G L K +
Sbjct: 194 -IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT----CLAGYYDRDLTDLMAKNMEE 248
Query: 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
+QL G V+ + +G + I DKN +
Sbjct: 249 HGIQLAFGETVKEV------------AGNGKVEKIITDKNE------------------Y 278
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
+ D+V+ VG + P+ N ++ DL N + + P ++A+GD + +
Sbjct: 279 DVDMVILAVGFR---PNTTLGNGKI-DLFRNGAFLVNKRQETSI---PGVYAIGDCATIY 331
Query: 421 DSSGR 425
D++ R
Sbjct: 332 DNATR 336
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 58/236 (24%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFA--FPFSTLEDACRVDRKLSELERRNFGKDSLIRVAV 249
YD L+LS GA+P + +PG E F + D R+ + E + R+ V
Sbjct: 141 YDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRH--------ATV 192
Query: 250 VGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK---VQLV 306
+G G+ GVE + ER E +V+ N + P P + E A V K V+LV
Sbjct: 193 IGGGFIGVEXVENLRERGIEVTLVEXAN---QVXP---PIDYEXAAYVHEHXKNHDVELV 246
Query: 307 LGYFVRCIRRVGEFEASVKQ-PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365
FE V E+GA+ + + + + D +
Sbjct: 247 -------------FEDGVDALEENGAVVRLKS-------------------GSVIQTDXL 274
Query: 366 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 421
+ +G +P E + L L RG + +E P I+A+GD+ ++D
Sbjct: 275 ILAIGVQP-----ESSLAKGAGLALGVRGTIKVNEKFQTS-DPHIYAIGDAIEVKD 324
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 32/141 (22%)
Query: 74 WPDKKKPR-ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSG 132
+ D+KKPR ++GGGF G+ L ++ +V LV+ + + V P+ YE
Sbjct: 181 YIDEKKPRHATVIGGGFIGVEXVENLR------ERGIEVTLVEXANQ-VXPPIDYEX--- 230
Query: 133 EVDAWEIAPRFADLLANTGVQF-FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
A + N V+ F+D V L +G V L+SG +++
Sbjct: 231 -------AAYVHEHXKNHDVELVFEDGVDALE-------------ENGAVVRLKSGSVIQ 270
Query: 192 YDWLVLSLGAEPKLDVVPGAA 212
D L+L++G +P+ + GA
Sbjct: 271 TDXLILAIGVQPESSLAKGAG 291
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 71/277 (25%)
Query: 192 YDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L++S GA P +LD+ + + + A ++ +K + E N V V+
Sbjct: 104 YDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNN--------VVVI 155
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE---AALKVLSARKVQLVL 307
G GY G+E A ++ ++ ++ ++ P G ++E + + A + +
Sbjct: 156 GSGYIGIEAAEAFAKAGKKVTVIDILD-----RPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V R G+ G + + DKN+ ++ADLV+
Sbjct: 211 GETVE--RYEGD----------GRVQKVVTDKNA------------------YDADLVVV 240
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
VG +P ++ L L+ G +TDE + P +FA+GD++ ++ +
Sbjct: 241 AVGVRPNTAWLKGT------LELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYN----- 288
Query: 428 PATAQV-------AFQQADFAGWNLWAAINDRPLLPF 457
PA +V A +Q FA NL + P+ PF
Sbjct: 289 PADTEVNIALATNAMKQGRFAVKNL-----EEPVKPF 320
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 21/180 (11%)
Query: 94 TALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQ 153
TA L +L+ D K + L+ F F P L G +I+ A LL ++
Sbjct: 17 TAYNLRNLM--PDLK--ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE 72
Query: 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV-VPGAA 212
F ++ + + P TV +SG +EYD+LV++ G PKL G
Sbjct: 73 FINEKAESIDPD-------------ANTVTTQSGKKIEYDYLVIATG--PKLVFGAEGQE 117
Query: 213 EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
E + T E A +KL EL N G + + V E A + L+++GI
Sbjct: 118 ENSTSICTAEHALETQKKLQEL-YANPGPVVIGAIPGVSXFGPAYEFALMLHYELKKRGI 176
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 21/180 (11%)
Query: 94 TALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQ 153
TA L +L+ D K + L+ F F P L G +I+ A LL ++
Sbjct: 17 TAYNLRNLM--PDLK--ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE 72
Query: 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV-VPGAA 212
F ++ + + P TV +SG +EYD+LV++ G PKL G
Sbjct: 73 FINEKAESIDPD-------------ANTVTTQSGKKIEYDYLVIATG--PKLVFGAEGQE 117
Query: 213 EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
E + T E A +KL EL N G + + V E A + L+++GI
Sbjct: 118 ENSTSICTAEHALETQKKLQEL-YANPGPVVIGAIPGVSXFGPAYEFALMLHYELKKRGI 176
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA 212
+FF+D+ L + ++ G +LL SG +EY LVL+ GA ++ VP A
Sbjct: 65 KFFQDQAIELISDRMVSID-----REGRKLLLASGTAIEYGHLVLATGARNRMLDVPNA- 118
Query: 213 EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI 272
+L D + R L E E V V+G G+ G+E AAT + E +
Sbjct: 119 -------SLPDVLYL-RTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDV 170
Query: 273 VQ 274
V+
Sbjct: 171 VE 172
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK-LDVVPGAAEFAFPFSTLEDACR 226
LGV TV L G + Y LVL+ GA P+ L + GA TLEDA R
Sbjct: 78 LGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARR 137
Query: 227 VDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT 262
+ L R+ +VG G G+ELAAT
Sbjct: 138 IQAGLRPQS----------RLLIVGGGVIGLELAAT 163
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK-LDVVPGAAEFAFPFSTLEDACR 226
LGV TV L G + Y LVL+ GA P+ L + GA TLEDA R
Sbjct: 78 LGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARR 137
Query: 227 VDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT 262
+ L R+ +VG G G+ELAAT
Sbjct: 138 IQAGLRPQS----------RLLIVGGGVIGLELAAT 163
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 71/277 (25%)
Query: 192 YDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L++S GA P +LD+ + + + A ++ +K + E N V V+
Sbjct: 104 YDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNN--------VVVI 155
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE---AALKVLSARKVQLVL 307
G GY G+E A ++ ++ ++ ++ P G ++E + + A + +
Sbjct: 156 GSGYIGIEAAEAFAKAGKKVTVIDILD-----RPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V R G+ G + + DKN+ ++ADLV+
Sbjct: 211 GETVE--RYEGD----------GRVQKVVTDKNA------------------YDADLVVV 240
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
VG +P ++ L L+ G +TDE + P +FA+GD++ ++ +
Sbjct: 241 AVGVRPNTAWLKGT------LELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYN----- 288
Query: 428 PATAQV-------AFQQADFAGWNLWAAINDRPLLPF 457
PA +V A +Q FA NL + P+ PF
Sbjct: 289 PADTEVNIALATNARKQGRFAVKNL-----EEPVKPF 320
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 71/277 (25%)
Query: 192 YDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L++S GA P +LD+ + + + A ++ +K + E N V V+
Sbjct: 104 YDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNN--------VVVI 155
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE---AALKVLSARKVQLVL 307
G GY G+E A ++ ++ ++ ++ P G ++E + + A + +
Sbjct: 156 GSGYIGIEAAEAFAKAGKKVTVIDILD-----RPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V R G+ G + + DKN+ ++ADLV+
Sbjct: 211 GETVE--RYEGD----------GRVQKVVTDKNA------------------YDADLVVV 240
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
VG +P ++ L L+ G +TDE + P +FA+GD++ ++ +
Sbjct: 241 AVGVRPNTAWLKGT------LELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYN----- 288
Query: 428 PATAQV-------AFQQADFAGWNLWAAINDRPLLPF 457
PA +V A +Q FA NL + P+ PF
Sbjct: 289 PADTEVNIALATNARKQGRFAVKNL-----EEPVKPF 320
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 71/277 (25%)
Query: 192 YDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L++S GA P +LD+ + + + A ++ +K + E N V V+
Sbjct: 104 YDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNN--------VVVI 155
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE---AALKVLSARKVQLVL 307
G GY G+E A ++ ++ ++ ++ P G ++E + + A + +
Sbjct: 156 GSGYIGIEAAEAFAKAGKKVTVIDILD-----RPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V R G+ G + + DKN+ ++ADLV+
Sbjct: 211 GETVE--RYEGD----------GRVQKVVTDKNA------------------YDADLVVV 240
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
VG +P ++ L L+ G +TDE + P +FA+GD++ ++ +
Sbjct: 241 AVGVRPNTAWLKGT------LELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYN----- 288
Query: 428 PATAQV-------AFQQADFAGWNLWAAINDRPLLPF 457
PA +V A +Q FA NL + P+ PF
Sbjct: 289 PADTEVNIALATNARKQGRFAVKNL-----EEPVKPF 320
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 71/277 (25%)
Query: 192 YDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L++S GA P +LD+ + + + A ++ +K + E N V V+
Sbjct: 104 YDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNN--------VVVI 155
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE---AALKVLSARKVQLVL 307
G GY G+E A ++ ++ ++ ++ P G ++E + + A + +
Sbjct: 156 GSGYIGIEAAEAFAKAGKKVTVIDILD-----RPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V R G+ G + + DKN+ ++ADLV+
Sbjct: 211 GETVE--RYEGD----------GRVQKVVTDKNA------------------YDADLVVV 240
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
VG +P ++ L L+ G +TDE + P +FA+GD++ ++ +
Sbjct: 241 AVGVRPNTAWLKGT------LELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYN----- 288
Query: 428 PATAQV-------AFQQADFAGWNLWAAINDRPLLPF 457
PA +V A +Q FA NL + P+ PF
Sbjct: 289 PADTEVNIALATNARKQGRFAVKNL-----EEPVKPF 320
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 71/277 (25%)
Query: 192 YDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L++S GA P +LD+ + + + A ++ +K + E N V V+
Sbjct: 104 YDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNN--------VVVI 155
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNRE---AALKVLSARKVQLVL 307
G GY G+E A ++ ++ ++ ++ P G ++E + + A + +
Sbjct: 156 GSGYIGIEAAEAFAKAGKKVTVIDILD-----RPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367
G V R G+ G + + DKN+ ++ADLV+
Sbjct: 211 GETVE--RYEGD----------GRVQKVVTDKNA------------------YDADLVVV 240
Query: 368 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427
VG +P ++ L L+ G +TDE + P +FA+GD++ ++ +
Sbjct: 241 AVGVRPNTAWLKGT------LELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYN----- 288
Query: 428 PATAQV-------AFQQADFAGWNLWAAINDRPLLPF 457
PA +V A +Q FA NL + P+ PF
Sbjct: 289 PADTEVNIALATNARKQGRFAVKNL-----EEPVKPF 320
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVE 258
+ + VPG+ P ++ +R +E + R G + +A C E
Sbjct: 110 PKLAFENVPGSDPHEGPVQSISTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYE 169
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 170 YAMIVASDLKKRGMRDKI 187
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVE 258
+ + VPG+ P ++ +R +E + R G + +A C E
Sbjct: 110 PKLAFENVPGSDPHEGPVQSIATVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYE 169
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 170 YAMIVASDLKKRGMRDKI 187
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVE 258
+ + VPG+ P ++ +R +E + R G + +A C E
Sbjct: 110 PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYE 169
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 170 YAMIVASDLKKRGMRDKI 187
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVE 258
+ + VPG+ P ++ +R +E + R G + +A C E
Sbjct: 110 PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYE 169
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 170 YAMIVASDLKKRGMRDKI 187
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVE 258
+ + VPG+ P ++ +R +E + R G + +A C E
Sbjct: 110 PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYE 169
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 170 YAMIVASDLKKRGMRDKI 187
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVE 258
+ + VPG+ P + +R +E + R G + +A C E
Sbjct: 110 PKLAFENVPGSDPHEGPVQAICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYE 169
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 170 YAMIVASDLKKRGMRDKI 187
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 60 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNFGKDSLIRVAVVGCGYSGVE 258
+ + VPG+ P ++ +R +E + R G + +A C E
Sbjct: 107 PKLAFENVPGSDPHEGPVQSICTVDAAERAFAEYQALLREPGPIVIGAMAGASCFGPAYE 166
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 167 YAMIVASDLKKRGMRDKI 184
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 48/241 (19%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFS-TLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L+LS GA P + +PG P + +L + +DR L ++ N + VV
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDN---PLTHSLRNIPDMDRILQTIQMNN-----VEHATVV 157
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTG----TPGNREAALKVLSARKVQLV 306
G G+ G+E+ E L GI +TT+ TP +RE A
Sbjct: 158 GGGFIGLEMM----ESLHHLGI------KTTLLELADQVMTPVDREMA------------ 195
Query: 307 LGYFVRCIR------RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
G+ + IR R+G + V + + AA +++ ++ ++ ++
Sbjct: 196 -GFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELL 254
Query: 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 420
E DL++ +G +P E R L + G + + + P I+A+GD+ +
Sbjct: 255 ETDLLIMAIGVRP-----ETQLARDAGLAIGELGGIKVN-AMMQTSDPAIYAVGDAVEEQ 308
Query: 421 D 421
D
Sbjct: 309 D 309
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 18/198 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 60 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSG--VE 258
+ + VPG+ P ++ +R +E + ++ A+ G G E
Sbjct: 107 PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASAFGPAYE 166
Query: 259 LAATVSERLEEKGIVQAI 276
A V+ L+++G+ I
Sbjct: 167 YAMIVASDLKKRGMRDKI 184
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 98/249 (39%), Gaps = 29/249 (11%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G G G A L D + P +++ R KPML S DA +A
Sbjct: 7 LVIIGTGLAGYNLAREWRKL---DGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA- 62
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+A G + ++L + G++ G + V Y LVL+ GA
Sbjct: 63 -----MAEPGAMAEQLNARILTHTRVTGID------PGHQRIWIGEEEVRYRDLVLAWGA 111
Query: 202 EPKLDVVPGAAEFA-FPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELA 260
EP V G A+ A +P + LED R R+ + +R RV ++G G G E A
Sbjct: 112 EPIRVPVEGDAQDALYPINDLEDYARF-RQAAAGKR---------RVLLLGAGLIGCEFA 161
Query: 261 ATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE- 319
+S + +V E + P +A L V+ LG + +++ GE
Sbjct: 162 NDLSSGGYQLDVVAP--CEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEG 219
Query: 320 FEASVKQPE 328
EA + E
Sbjct: 220 LEAHLSDGE 228
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
E++ +AD VL TVG + P+ + + + RG E D+ C P IFA+GD
Sbjct: 253 ETKTIDADYVLVTVGRR---PNTDELGLEQIGIKMTNRGLIEVDQQ-CRTSVPNIFAIGD 308
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY 127
D + RI + G FGG+ AL SL W++D K +LL + +P Y
Sbjct: 140 DSGQERIYLAGESFGGI-AALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFY 190
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 40/173 (23%)
Query: 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
+V VVG GY G+ELA G+ + ET + G +
Sbjct: 187 KVVVVGAGYIGIELA----------GVFHGLGSETHLVIRG-----------------ET 219
Query: 306 VLGYFVRCIRRV---GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 362
VL F CI+ + + + I + + +DK + + + I +
Sbjct: 220 VLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDS-----KSIDDV 274
Query: 363 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 415
D ++WT+G K H+ + + + LN+ Q DE P I++LGD
Sbjct: 275 DELIWTIGRK---SHLGMGSENV-GIKLNSHDQIIADEYQNTNV-PNIYSLGD 322
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 55/194 (28%)
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
V+++G P+ +PGA E+ T +D +DR+ + VVG GY
Sbjct: 154 FVIAVGGRPRYPDIPGAVEYGI---TSDDLFSLDREPG-------------KTLVVGAGY 197
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
G+E A G ++ + E T+ R L+ + +LV
Sbjct: 198 IGLECA----------GFLKGLGYEPTVMV------RSIVLRGFDQQMAELV-------- 233
Query: 315 RRVGEFEASVKQPESG------AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ E G +P ++ K +++ + G ES+ D VLW
Sbjct: 234 --------AASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDV-YDTVLWA 284
Query: 369 VGSKPLLPHVEPPN 382
+G K L+ + PN
Sbjct: 285 IGRKGLVDDLNLPN 298
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 55/194 (28%)
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
V+++G P+ +PGA E+ T +D +DR+ + VVG GY
Sbjct: 150 FVIAVGGRPRYPDIPGAVEYGI---TSDDLFSLDREPG-------------KTLVVGAGY 193
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
G+E A G ++ + E T+ R L+ + +LV
Sbjct: 194 IGLECA----------GFLKGLGYEPTVMV------RSIVLRGFDQQMAELV-------- 229
Query: 315 RRVGEFEASVKQPESG------AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ E G +P ++ K +++ + G ES+ D VLW
Sbjct: 230 --------AASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDV-YDTVLWA 280
Query: 369 VGSKPLLPHVEPPN 382
+G K L+ + PN
Sbjct: 281 IGRKGLVDDLNLPN 294
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 55/194 (28%)
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254
V+++G P+ +PGA E+ T +D +DR+ + VVG GY
Sbjct: 154 FVIAVGGRPRYPDIPGAVEYGI---TSDDLFSLDREPG-------------KTLVVGAGY 197
Query: 255 SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314
G+E A G ++ + E T+ R L+ + +LV
Sbjct: 198 IGLECA----------GFLKGLGYEPTVMV------RSIVLRGFDQQMAELV-------- 233
Query: 315 RRVGEFEASVKQPESG------AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368
+ E G +P ++ K +++ + G ES+ D VLW
Sbjct: 234 --------AASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDV-YDTVLWA 284
Query: 369 VGSKPLLPHVEPPN 382
+G K L+ + PN
Sbjct: 285 IGRKGLVDDLNLPN 298
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 41/176 (23%)
Query: 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 305
RVAVVG GY GVEL ++ + + + + P+ P E ++V++A QL
Sbjct: 169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP---LPSFDPMISETLVEVMNAEGPQL 225
Query: 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADL 364
+ AIP A KN+D + LEL+ + + D
Sbjct: 226 ----------------------HTNAIPK-AVVKNTDGSLTLELE------DGRSETVDC 256
Query: 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD--ETLCVKGHPRIFALGDSSA 418
++W +G +P ++ N + N +G D + ++G I+A+GD++
Sbjct: 257 LIWAIGREPANDNI---NLEAAGVKTNEKGYIVVDKYQNTNIEG---IYAVGDNTG 306
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 181 TVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF 239
TV L G +EY L+ + G +P +L V T EDA DR ++EL +
Sbjct: 97 TVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDA---DRLMAEL---DA 150
Query: 240 GKDSLIRVAVVGCGYSGVELAATVSE 265
G + + V+G GY G+E AA +++
Sbjct: 151 GAKNAV---VIGGGYIGLEAAAVLTK 173
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 54/244 (22%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFS-TLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L+LS GA P + +PG P + +L + DR L ++ N + VV
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDN---PLTHSLRNIPDXDRILQTIQXNN-----VEHATVV 157
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICP----TGTPGNREAALKVLSARKVQLV 306
G G+ G+E E L GI +TT+ TP +RE A
Sbjct: 158 GGGFIGLE----XXESLHHLGI------KTTLLELADQVXTPVDREXA------------ 195
Query: 307 LGYFVRCIR------RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
G+ + IR R+G + V + + AA +++ ++ ++ ++
Sbjct: 196 -GFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELL 254
Query: 361 EADLVLWTVGSKP---LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
E DL++ +G +P L L + +NA Q P I+A+GD+
Sbjct: 255 ETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSD---------PAIYAVGDAV 305
Query: 418 ALRD 421
+D
Sbjct: 306 EEQD 309
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 54/244 (22%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFS-TLEDACRVDRKLSELERRNFGKDSLIRVAVV 250
YD L+LS GA P + +PG P + +L + DR L ++ N + VV
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDN---PLTHSLRNIPDXDRILQTIQXNN-----VEHATVV 157
Query: 251 GCGYSGVELAATVSERLEEKGIVQAINVETTICPTG----TPGNREAALKVLSARKVQLV 306
G G+ G+E E L GI +TT+ TP +RE A
Sbjct: 158 GGGFIGLE----XXESLHHLGI------KTTLLELADQVXTPVDREXA------------ 195
Query: 307 LGYFVRCIR------RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360
G+ + IR R+G + V + + AA +++ ++ ++ ++
Sbjct: 196 -GFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELL 254
Query: 361 EADLVLWTVGSKP---LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 417
E DL++ +G +P L L + +NA Q P I+A+GD+
Sbjct: 255 ETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSD---------PAIYAVGDAV 305
Query: 418 ALRD 421
+D
Sbjct: 306 EEQD 309
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
+S I D++ TV S P PP N+ +LP+ Q L HP I A
Sbjct: 262 FQSGIGPTDMIQ-TVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFT-HPSIDAYE 319
Query: 415 DSSALRDSSGRPLPATAQVAFQQADFAG----WNLWAA 448
+ + + S+ RP A +A Q FAG N W A
Sbjct: 320 NWADVW-SNPRPADAAQYLANQSGVFAGASPKLNFWRA 356
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 414
+S I D++ TV S P PP N+ +LP+ Q L HP I A
Sbjct: 267 FQSGIGPTDMIQ-TVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFT-HPSIDAYE 324
Query: 415 DSSALRDSSGRPLPATAQVAFQQADFAG----WNLWAA 448
+ + + S+ RP A +A Q FAG N W A
Sbjct: 325 NWADVW-SNPRPADAAQYLANQSGVFAGASPKLNFWRA 361
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 18/163 (11%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
DK+ +++ ++ F + GEV R+A LA T +F+ DR ++ +
Sbjct: 23 DKESDIIIFEKDRDMSFANSALPYVIGEVVEDR---RYA--LAYTPEKFY-DRKQITVKT 76
Query: 166 DH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
H + +N YD L+LS GA + + ++ F LED
Sbjct: 77 YHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA--NSLGFESDITFTLRNLED 134
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSER 266
+D+ + + + +V VVG GY +E+ + ER
Sbjct: 135 TDAIDQFIK--------ANQVDKVLVVGAGYVSLEVLENLYER 169
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 18/163 (11%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
DK+ +++ ++ F + GEV R+A LA T +F+ DR ++ +
Sbjct: 23 DKESDIIIFEKDRDMSFANCALPYVIGEVVEDR---RYA--LAYTPEKFY-DRKQITVKT 76
Query: 166 DH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
H + +N YD L+LS GA + + ++ F LED
Sbjct: 77 YHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA--NSLGFESDITFTLRNLED 134
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSER 266
+D+ + + + +V VVG GY +E+ + ER
Sbjct: 135 TDAIDQFIK--------ANQVDKVLVVGAGYVSLEVLENLYER 169
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 18/163 (11%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
DK+ +++ ++ F + GEV R+A LA T +F+ DR ++ +
Sbjct: 23 DKESDIIIFEKDRDMSFANCALPYVIGEVVEDR---RYA--LAYTPEKFY-DRKQITVKT 76
Query: 166 DH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
H + +N YD L+LS GA + + ++ F LED
Sbjct: 77 YHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA--NSLGFESDITFTLRNLED 134
Query: 224 ACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSER 266
+D+ + + + +V VVG GY +E+ + ER
Sbjct: 135 TDAIDQFIK--------ANQVDKVLVVGAGYVSLEVLENLYER 169
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
YD L+LS GA + + ++ F LED +D+ + + + +V VVG
Sbjct: 105 YDKLILSPGASA--NSLGFESDITFTLRNLEDTDAIDQFIK--------ANQVDKVLVVG 154
Query: 252 CGYSGVELAATVSER 266
GY +E+ + ER
Sbjct: 155 AGYVSLEVLENLYER 169
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
YD L+LS GA + + ++ F LED +D+ + + + +V VVG
Sbjct: 106 YDKLILSPGASA--NSLGFESDITFTLRNLEDTDAIDQFIK--------ANQVDKVLVVG 155
Query: 252 CGYSGVELAATVSER 266
GY +E+ + ER
Sbjct: 156 AGYVSLEVLENLYER 170
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
YD L+LS GA + + ++ F LED +D+ + + + +V VVG
Sbjct: 105 YDKLILSPGASA--NSLGFESDITFTLRNLEDTDAIDQFIK--------ANQVDKVLVVG 154
Query: 252 CGYSGVELAATVSER 266
GY +E+ + ER
Sbjct: 155 AGYVSLEVLENLYER 169
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251
YD L+LS GA + + ++ F LED +D+ + + + +V VVG
Sbjct: 105 YDKLILSPGASA--NSLGFESDITFTLRNLEDTDAIDQFIK--------ANQVDKVLVVG 154
Query: 252 CGYSGVELAATVSER 266
GY +E+ + ER
Sbjct: 155 AGYVSLEVLENLYER 169
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 87 GGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADL 146
GGFGG T+ +++ V ++ P +L D + + + LY LSG+ + I P FA L
Sbjct: 150 GGFGGKRTSDKVKVAVAIPNRPPDAVLTDTTS--LNQAALYR-LSGDWNPLHIDPNFASL 206
>pdb|3HRS|A Chain A, Crystal Structure Of The Manganese-Activated Repressor
Scar: Apo Form
pdb|3HRS|B Chain B, Crystal Structure Of The Manganese-Activated Repressor
Scar: Apo Form
pdb|3HRT|A Chain A, Crystal Structure Of Scar With Bound Cd2+
pdb|3HRT|B Chain B, Crystal Structure Of Scar With Bound Cd2+
pdb|3HRU|A Chain A, Crystal Structure Of Scar With Bound Zn2+
pdb|3HRU|B Chain B, Crystal Structure Of Scar With Bound Zn2+
Length = 214
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
A++L +T F +R+ L ++ P AC HGGT+ + L+VE L L E
Sbjct: 97 AEVLEHTVSDHFVERLDQL-------LDYPKACPHGGTIPAKGELLVEKHKLTLEEAKE 148
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV--FKPMLYELLSGEVD 135
K +I ILG G G A +L DD + + SE+++ ++P L E+++
Sbjct: 8 KSTKILILGAGPAGFSAAK--AALGKCDD-----ITMINSEKYLPYYRPRLNEIIAKN-- 58
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
D+L + K+ +K++ ++ + V L+SG ++Y+ L
Sbjct: 59 -----KSIDDILIKKNDWYEKNNIKVITSEFATSID-----PNNKLVTLKSGEKIKYEKL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
+++ G+ VP A E F + +DA ++
Sbjct: 109 IIASGSIANKIKVPHADEI-FSLYSYDDALKI 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,686,661
Number of Sequences: 62578
Number of extensions: 672815
Number of successful extensions: 1593
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 78
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)