Query 009310
Match_columns 538
No_of_seqs 402 out of 3748
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 23:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1252 Ndh NADH dehydrogenase 100.0 7.9E-64 1.7E-68 502.4 40.6 383 78-520 2-399 (405)
2 PTZ00318 NADH dehydrogenase-li 100.0 2.4E-56 5.2E-61 466.9 43.4 379 77-519 8-415 (424)
3 KOG2495 NADH-dehydrogenase (ub 100.0 2.2E-51 4.8E-56 399.7 26.0 390 74-518 50-481 (491)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 2.8E-48 6E-53 399.6 36.8 354 81-499 1-358 (364)
5 PRK09754 phenylpropionate diox 100.0 1.1E-40 2.5E-45 346.2 31.7 324 79-471 3-334 (396)
6 PRK13512 coenzyme A disulfide 100.0 2.5E-39 5.5E-44 339.9 30.7 299 80-447 2-311 (438)
7 PRK14989 nitrite reductase sub 100.0 2.2E-38 4.7E-43 352.1 31.0 303 79-447 3-309 (847)
8 PRK09564 coenzyme A disulfide 100.0 1.4E-38 3.1E-43 336.2 27.7 304 80-447 1-316 (444)
9 PRK04965 NADH:flavorubredoxin 100.0 3E-38 6.5E-43 326.2 29.4 297 79-448 2-302 (377)
10 TIGR01424 gluta_reduc_2 glutat 100.0 1.7E-37 3.7E-42 327.0 30.0 287 79-447 2-325 (446)
11 TIGR02374 nitri_red_nirB nitri 100.0 1.7E-37 3.7E-42 345.6 31.6 296 82-447 1-300 (785)
12 PLN02507 glutathione reductase 100.0 1.1E-36 2.4E-41 323.6 31.4 291 77-447 23-362 (499)
13 COG1249 Lpd Pyruvate/2-oxoglut 100.0 5.9E-37 1.3E-41 316.2 27.7 292 78-447 3-334 (454)
14 TIGR01421 gluta_reduc_1 glutat 100.0 1.7E-36 3.7E-41 319.2 31.2 286 79-447 2-327 (450)
15 PRK06116 glutathione reductase 100.0 8.4E-37 1.8E-41 322.7 29.0 286 79-447 4-327 (450)
16 PRK06467 dihydrolipoamide dehy 100.0 3.7E-36 8E-41 318.4 32.8 294 78-447 3-336 (471)
17 PRK06416 dihydrolipoamide dehy 100.0 1.8E-36 3.8E-41 321.4 29.9 293 78-447 3-333 (462)
18 PRK06370 mercuric reductase; V 100.0 3.7E-36 8.1E-41 318.7 31.5 291 78-447 4-333 (463)
19 PRK08010 pyridine nucleotide-d 100.0 2.9E-36 6.2E-41 317.8 28.6 291 79-447 3-316 (441)
20 PRK05249 soluble pyridine nucl 100.0 1E-35 2.2E-40 315.7 31.1 292 78-447 4-334 (461)
21 TIGR02053 MerA mercuric reduct 100.0 8E-36 1.7E-40 316.4 29.7 290 80-447 1-328 (463)
22 PLN02546 glutathione reductase 100.0 1.2E-35 2.6E-40 317.1 30.5 288 78-447 78-412 (558)
23 PRK06115 dihydrolipoamide dehy 100.0 1.6E-35 3.5E-40 313.4 29.4 295 79-447 3-337 (466)
24 PRK07845 flavoprotein disulfid 100.0 2.2E-35 4.8E-40 312.3 30.2 291 80-447 2-336 (466)
25 PRK07251 pyridine nucleotide-d 100.0 3.3E-35 7.1E-40 309.5 30.9 289 79-447 3-315 (438)
26 TIGR01423 trypano_reduc trypan 100.0 3.4E-35 7.3E-40 310.4 29.5 295 78-447 2-350 (486)
27 PRK14694 putative mercuric red 100.0 8.3E-35 1.8E-39 308.5 32.0 290 76-447 3-334 (468)
28 PRK07846 mycothione reductase; 100.0 1E-34 2.2E-39 305.6 31.9 285 80-447 2-324 (451)
29 PTZ00058 glutathione reductase 100.0 1.1E-34 2.4E-39 309.5 31.6 314 74-447 43-431 (561)
30 TIGR01292 TRX_reduct thioredox 100.0 4.3E-35 9.3E-40 293.4 24.5 289 80-448 1-299 (300)
31 PRK05976 dihydrolipoamide dehy 100.0 1.6E-34 3.5E-39 306.8 29.9 300 78-446 3-341 (472)
32 PRK07818 dihydrolipoamide dehy 100.0 3.8E-34 8.2E-39 303.5 31.7 293 79-447 4-335 (466)
33 PRK13748 putative mercuric red 100.0 3.4E-34 7.3E-39 311.3 31.6 289 78-447 97-427 (561)
34 TIGR01350 lipoamide_DH dihydro 100.0 4.9E-34 1.1E-38 302.9 31.3 289 80-447 2-331 (461)
35 TIGR01438 TGR thioredoxin and 100.0 4E-34 8.6E-39 302.9 30.1 293 79-447 2-343 (484)
36 PRK14727 putative mercuric red 100.0 8.7E-34 1.9E-38 301.2 32.2 290 78-447 15-345 (479)
37 PRK06292 dihydrolipoamide dehy 100.0 6.7E-34 1.4E-38 301.7 30.4 290 78-447 2-330 (460)
38 PRK10262 thioredoxin reductase 100.0 2.9E-34 6.4E-39 290.1 24.2 304 77-452 4-317 (321)
39 PRK06912 acoL dihydrolipoamide 100.0 1.5E-33 3.3E-38 298.0 29.7 289 81-447 2-329 (458)
40 PTZ00052 thioredoxin reductase 100.0 4.9E-33 1.1E-37 296.0 31.9 287 79-447 5-340 (499)
41 TIGR03452 mycothione_red mycot 100.0 5E-33 1.1E-37 293.0 31.3 286 79-447 2-327 (452)
42 KOG1336 Monodehydroascorbate/f 100.0 1.4E-33 3E-38 281.0 24.6 317 79-461 74-397 (478)
43 PRK06327 dihydrolipoamide dehy 100.0 8.5E-33 1.9E-37 293.5 30.9 296 79-447 4-346 (475)
44 PTZ00153 lipoamide dehydrogena 100.0 1.6E-32 3.5E-37 296.4 31.5 211 186-447 269-494 (659)
45 TIGR01316 gltA glutamate synth 100.0 1.3E-33 2.8E-38 297.0 22.1 304 77-449 131-449 (449)
46 PRK11749 dihydropyrimidine deh 100.0 4.2E-33 9.1E-38 294.6 25.2 353 23-453 82-455 (457)
47 PRK12831 putative oxidoreducta 100.0 1.8E-33 3.8E-38 296.5 21.9 311 76-452 137-463 (464)
48 TIGR03385 CoA_CoA_reduc CoA-di 100.0 5.4E-33 1.2E-37 291.9 25.2 290 93-447 1-303 (427)
49 PRK09853 putative selenate red 100.0 3E-33 6.5E-38 308.7 22.8 356 23-450 481-842 (1019)
50 TIGR03143 AhpF_homolog putativ 100.0 1.7E-32 3.6E-37 295.6 24.6 298 78-452 3-311 (555)
51 TIGR03140 AhpF alkyl hydropero 100.0 1.5E-32 3.3E-37 293.8 23.1 297 77-450 210-513 (515)
52 TIGR03315 Se_ygfK putative sel 100.0 3.9E-32 8.4E-37 301.6 24.8 301 77-450 535-840 (1012)
53 COG0492 TrxB Thioredoxin reduc 100.0 8.8E-32 1.9E-36 265.2 23.0 289 78-451 2-302 (305)
54 PRK12810 gltD glutamate syntha 100.0 1.6E-31 3.4E-36 283.1 25.1 315 77-456 141-471 (471)
55 PRK15317 alkyl hydroperoxide r 100.0 1.4E-31 3.1E-36 286.6 24.5 295 77-451 209-513 (517)
56 COG1251 NirB NAD(P)H-nitrite r 100.0 7.1E-32 1.5E-36 280.2 20.6 303 79-451 3-309 (793)
57 PRK12778 putative bifunctional 100.0 1.5E-31 3.3E-36 298.3 23.9 310 77-452 429-752 (752)
58 PRK12814 putative NADPH-depend 100.0 1.2E-31 2.7E-36 293.3 21.0 356 23-456 136-507 (652)
59 PRK12770 putative glutamate sy 100.0 3.2E-30 7E-35 263.7 27.2 320 77-451 16-351 (352)
60 KOG1335 Dihydrolipoamide dehyd 100.0 4.3E-31 9.3E-36 253.9 19.2 299 78-448 38-377 (506)
61 PRK12779 putative bifunctional 100.0 1.1E-30 2.3E-35 293.4 25.6 309 77-451 304-628 (944)
62 KOG0405 Pyridine nucleotide-di 100.0 3.5E-30 7.5E-35 244.6 21.0 309 76-466 17-365 (478)
63 PRK12775 putative trifunctiona 100.0 3.3E-30 7.2E-35 291.9 22.7 309 78-452 429-757 (1006)
64 TIGR01317 GOGAT_sm_gam glutama 100.0 3.6E-29 7.9E-34 265.2 23.1 314 78-456 142-485 (485)
65 TIGR01318 gltD_gamma_fam gluta 100.0 1.1E-28 2.4E-33 260.5 24.8 304 78-450 140-466 (467)
66 PRK12769 putative oxidoreducta 100.0 9.2E-29 2E-33 271.8 23.1 303 78-451 326-653 (654)
67 PRK13984 putative oxidoreducta 100.0 2.7E-28 5.9E-33 266.6 22.3 308 77-451 281-603 (604)
68 PRK12809 putative oxidoreducta 100.0 2.7E-27 5.8E-32 259.2 23.5 306 78-452 309-637 (639)
69 KOG3851 Sulfide:quinone oxidor 100.0 1.9E-27 4E-32 223.7 17.1 341 76-475 36-385 (446)
70 PLN02852 ferredoxin-NADP+ redu 99.9 5.2E-26 1.1E-30 237.7 26.0 320 77-451 24-423 (491)
71 PRK12771 putative glutamate sy 99.9 1.6E-26 3.5E-31 250.3 23.0 301 77-454 135-448 (564)
72 KOG4716 Thioredoxin reductase 99.9 5.4E-27 1.2E-31 222.0 13.3 306 76-447 16-364 (503)
73 KOG0404 Thioredoxin reductase 99.9 3.9E-26 8.5E-31 204.6 17.3 294 78-449 7-318 (322)
74 COG3634 AhpF Alkyl hydroperoxi 99.9 8.9E-27 1.9E-31 221.3 13.3 293 77-446 209-511 (520)
75 TIGR01372 soxA sarcosine oxida 99.9 3.8E-25 8.2E-30 252.4 27.4 303 78-451 162-473 (985)
76 KOG1346 Programmed cell death 99.9 4E-26 8.7E-31 221.3 16.2 322 78-462 177-533 (659)
77 COG0446 HcaD Uncharacterized N 99.9 7.6E-25 1.7E-29 229.2 26.1 303 82-448 1-310 (415)
78 PLN02172 flavin-containing mon 99.9 1.2E-23 2.6E-28 220.6 17.3 273 77-447 8-350 (461)
79 PRK06567 putative bifunctional 99.9 5.9E-22 1.3E-26 216.5 22.6 294 77-453 381-773 (1028)
80 COG0493 GltD NADPH-dependent g 99.9 3.8E-21 8.2E-26 199.2 19.1 321 78-451 122-453 (457)
81 PF00743 FMO-like: Flavin-bind 99.8 8.9E-21 1.9E-25 201.6 12.9 318 79-446 1-393 (531)
82 KOG0399 Glutamate synthase [Am 99.8 2.9E-20 6.3E-25 197.9 12.6 320 76-454 1782-2124(2142)
83 PF07992 Pyr_redox_2: Pyridine 99.8 7.2E-20 1.6E-24 172.1 5.9 151 81-251 1-159 (201)
84 KOG2755 Oxidoreductase [Genera 99.8 2.4E-18 5.2E-23 158.4 11.3 283 81-419 1-322 (334)
85 COG2072 TrkA Predicted flavopr 99.7 2.3E-16 5.1E-21 165.1 18.1 177 76-282 5-210 (443)
86 PF13434 K_oxygenase: L-lysine 99.7 1E-16 2.3E-21 161.8 14.4 247 80-372 3-340 (341)
87 KOG1399 Flavin-containing mono 99.7 9.1E-16 2E-20 158.4 17.8 228 77-380 4-276 (448)
88 KOG1800 Ferredoxin/adrenodoxin 99.7 8.1E-16 1.8E-20 149.0 16.1 311 78-450 19-407 (468)
89 PTZ00188 adrenodoxin reductase 99.7 2.1E-15 4.5E-20 155.5 18.2 105 76-205 36-140 (506)
90 COG3486 IucD Lysine/ornithine 99.7 3.1E-14 6.8E-19 140.2 24.5 313 77-452 3-413 (436)
91 PF13738 Pyr_redox_3: Pyridine 99.7 6.5E-17 1.4E-21 152.3 4.9 164 83-281 1-201 (203)
92 COG1148 HdrA Heterodisulfide r 99.6 1.9E-14 4.1E-19 143.5 21.7 328 77-451 122-546 (622)
93 PRK05329 anaerobic glycerol-3- 99.5 3.7E-13 7.9E-18 139.2 20.0 172 248-449 219-420 (422)
94 COG2081 Predicted flavoprotein 99.4 4.9E-11 1.1E-15 118.2 19.5 46 401-449 362-407 (408)
95 COG4529 Uncharacterized protei 99.3 1.2E-10 2.7E-15 118.3 18.7 175 79-280 1-231 (474)
96 PF00070 Pyr_redox: Pyridine n 99.2 9.3E-11 2E-15 92.6 10.1 70 246-318 1-70 (80)
97 TIGR03378 glycerol3P_GlpB glyc 98.9 8.3E-08 1.8E-12 98.4 18.5 154 257-445 236-418 (419)
98 PRK09897 hypothetical protein; 98.9 1.4E-08 3.1E-13 108.2 12.9 172 79-281 1-246 (534)
99 PF03486 HI0933_like: HI0933-l 98.8 7.3E-09 1.6E-13 107.1 8.7 73 274-374 93-167 (409)
100 TIGR00136 gidA glucose-inhibit 98.8 1.6E-07 3.6E-12 100.1 17.0 50 397-455 347-396 (617)
101 PLN02463 lycopene beta cyclase 98.8 4E-08 8.7E-13 103.1 11.2 113 76-205 25-171 (447)
102 PRK12842 putative succinate de 98.7 2.2E-08 4.7E-13 109.2 6.4 103 244-374 157-276 (574)
103 PRK13977 myosin-cross-reactive 98.7 6.9E-07 1.5E-11 94.7 16.7 45 77-123 20-64 (576)
104 PRK08773 2-octaprenyl-3-methyl 98.6 1.3E-06 2.9E-11 90.9 15.8 57 289-374 114-170 (392)
105 PRK06847 hypothetical protein; 98.5 3.3E-07 7.1E-12 94.8 10.2 36 78-119 3-38 (375)
106 TIGR01292 TRX_reduct thioredox 98.5 8.1E-07 1.7E-11 88.7 12.6 100 246-378 2-117 (300)
107 PRK07804 L-aspartate oxidase; 98.5 1.5E-06 3.2E-11 94.1 14.9 36 78-119 15-50 (541)
108 TIGR01790 carotene-cycl lycope 98.5 3.4E-07 7.4E-12 95.2 9.2 107 81-203 1-141 (388)
109 TIGR02032 GG-red-SF geranylger 98.5 3.6E-07 7.9E-12 90.8 9.0 34 80-119 1-34 (295)
110 PF01266 DAO: FAD dependent ox 98.5 1.8E-06 3.8E-11 88.2 14.3 57 288-374 147-204 (358)
111 PRK07843 3-ketosteroid-delta-1 98.5 3.6E-07 7.8E-12 99.2 9.3 72 244-318 160-238 (557)
112 PRK09754 phenylpropionate diox 98.5 6E-07 1.3E-11 93.5 9.9 99 79-205 144-243 (396)
113 PF13454 NAD_binding_9: FAD-NA 98.5 1.6E-06 3.4E-11 77.9 11.1 107 83-201 1-155 (156)
114 PRK04176 ribulose-1,5-biphosph 98.5 1.1E-05 2.5E-10 78.4 17.8 180 245-451 26-256 (257)
115 PRK10157 putative oxidoreducta 98.4 5.9E-06 1.3E-10 86.9 16.8 38 78-121 4-41 (428)
116 PRK07608 ubiquinone biosynthes 98.4 8.3E-07 1.8E-11 92.2 9.9 36 78-119 4-39 (388)
117 COG0644 FixC Dehydrogenases (f 98.4 3.5E-06 7.5E-11 87.8 14.3 42 78-125 2-43 (396)
118 PF01494 FAD_binding_3: FAD bi 98.4 1.7E-06 3.7E-11 88.2 11.9 37 80-122 2-38 (356)
119 PRK04965 NADH:flavorubredoxin 98.4 1.1E-06 2.4E-11 91.0 10.5 100 79-205 141-241 (377)
120 TIGR00551 nadB L-aspartate oxi 98.4 2.6E-06 5.7E-11 91.1 13.5 57 392-449 332-389 (488)
121 PRK09231 fumarate reductase fl 98.4 4.1E-06 8.9E-11 91.4 15.2 59 392-451 357-416 (582)
122 PLN02697 lycopene epsilon cycl 98.4 9.7E-07 2.1E-11 94.3 10.0 111 77-203 106-248 (529)
123 PF00070 Pyr_redox: Pyridine n 98.4 8.8E-07 1.9E-11 69.8 7.3 69 81-166 1-70 (80)
124 PRK07251 pyridine nucleotide-d 98.4 1.4E-06 3.1E-11 92.0 10.9 99 79-206 157-256 (438)
125 PRK04176 ribulose-1,5-biphosph 98.4 1.2E-06 2.7E-11 85.2 9.5 38 77-120 23-60 (257)
126 PRK06263 sdhA succinate dehydr 98.4 6.5E-06 1.4E-10 89.3 15.7 58 393-451 348-405 (543)
127 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.8E-06 3.9E-11 91.0 10.6 99 79-206 137-236 (427)
128 PRK07364 2-octaprenyl-6-methox 98.4 1.8E-06 3.9E-11 90.6 10.6 37 77-119 16-52 (415)
129 PRK06834 hypothetical protein; 98.4 1.7E-06 3.6E-11 92.5 10.4 35 79-119 3-37 (488)
130 TIGR02023 BchP-ChlP geranylger 98.4 1.4E-06 3.1E-11 90.5 9.3 32 80-117 1-32 (388)
131 PRK05976 dihydrolipoamide dehy 98.4 2.4E-06 5.1E-11 91.2 11.1 101 79-207 180-285 (472)
132 PRK05714 2-octaprenyl-3-methyl 98.3 1.4E-06 3.1E-11 91.0 9.3 34 79-118 2-35 (405)
133 PRK05192 tRNA uridine 5-carbox 98.3 1.7E-06 3.7E-11 92.7 9.7 44 398-450 350-393 (618)
134 PRK07333 2-octaprenyl-6-methox 98.3 1E-06 2.2E-11 92.1 7.9 36 80-119 2-37 (403)
135 PRK11728 hydroxyglutarate oxid 98.3 4.4E-06 9.5E-11 87.0 12.5 57 288-374 149-205 (393)
136 PF01134 GIDA: Glucose inhibit 98.3 1.4E-06 3.1E-11 88.5 8.4 47 398-453 346-392 (392)
137 COG1249 Lpd Pyruvate/2-oxoglut 98.3 3.2E-06 6.9E-11 88.4 11.2 103 77-207 171-276 (454)
138 PF05834 Lycopene_cycl: Lycope 98.3 1.9E-06 4.1E-11 89.0 9.5 109 81-204 1-143 (374)
139 PRK06184 hypothetical protein; 98.3 2.5E-06 5.5E-11 91.8 10.7 34 79-118 3-36 (502)
140 PRK07236 hypothetical protein; 98.3 3.2E-06 7E-11 87.8 10.8 37 77-119 4-40 (386)
141 COG3075 GlpB Anaerobic glycero 98.3 1.4E-05 3.1E-10 77.2 14.1 137 287-451 257-419 (421)
142 PRK08163 salicylate hydroxylas 98.3 2.5E-06 5.3E-11 89.0 9.7 36 78-119 3-38 (396)
143 PLN00093 geranylgeranyl diphos 98.3 2.8E-06 6E-11 89.6 10.2 37 76-118 36-72 (450)
144 PRK06416 dihydrolipoamide dehy 98.3 3.3E-06 7.1E-11 89.9 10.8 101 79-207 172-276 (462)
145 COG0029 NadB Aspartate oxidase 98.3 2.9E-06 6.3E-11 86.7 9.7 31 81-118 9-39 (518)
146 PRK09564 coenzyme A disulfide 98.3 4.3E-06 9.4E-11 88.5 11.7 105 245-378 1-120 (444)
147 TIGR01350 lipoamide_DH dihydro 98.3 3.4E-06 7.3E-11 89.8 10.8 100 79-206 170-272 (461)
148 TIGR02734 crtI_fam phytoene de 98.3 1.7E-05 3.7E-10 85.4 16.2 37 82-124 1-37 (502)
149 PRK06912 acoL dihydrolipoamide 98.3 4.6E-06 1E-10 88.6 11.1 101 79-207 170-272 (458)
150 COG0579 Predicted dehydrogenas 98.3 1.6E-05 3.5E-10 81.8 14.3 40 78-121 2-41 (429)
151 TIGR00275 flavoprotein, HI0933 98.3 1.3E-05 2.9E-10 83.5 13.8 57 287-373 104-160 (400)
152 PRK07494 2-octaprenyl-6-methox 98.3 3E-06 6.6E-11 88.0 9.1 35 79-119 7-41 (388)
153 TIGR00292 thiazole biosynthesi 98.2 4.2E-06 9.2E-11 81.2 9.3 37 78-120 20-56 (254)
154 PRK10015 oxidoreductase; Provi 98.2 3.3E-06 7.2E-11 88.8 9.2 37 78-120 4-40 (429)
155 PRK08071 L-aspartate oxidase; 98.2 1.6E-05 3.5E-10 85.5 14.5 56 393-449 332-388 (510)
156 PRK09126 hypothetical protein; 98.2 6.4E-06 1.4E-10 85.7 11.1 36 78-119 2-37 (392)
157 COG2081 Predicted flavoprotein 98.2 6.8E-06 1.5E-10 82.2 10.6 96 245-372 4-166 (408)
158 PRK08020 ubiF 2-octaprenyl-3-m 98.2 3.8E-06 8.2E-11 87.4 9.3 35 78-118 4-38 (391)
159 COG0654 UbiH 2-polyprenyl-6-me 98.2 3.6E-06 7.7E-11 87.5 9.0 33 79-117 2-34 (387)
160 TIGR02028 ChlP geranylgeranyl 98.2 3.8E-06 8.2E-11 87.5 9.2 34 80-119 1-34 (398)
161 PRK13512 coenzyme A disulfide 98.2 5.5E-06 1.2E-10 87.5 10.5 96 79-206 148-244 (438)
162 TIGR03329 Phn_aa_oxid putative 98.2 4.4E-06 9.6E-11 88.8 9.6 38 77-118 22-59 (460)
163 PRK07190 hypothetical protein; 98.2 5.2E-06 1.1E-10 88.6 10.2 35 79-119 5-39 (487)
164 PRK06185 hypothetical protein; 98.2 4.2E-05 9.2E-10 80.0 16.8 37 77-119 4-40 (407)
165 PTZ00383 malate:quinone oxidor 98.2 1.3E-05 2.8E-10 85.3 12.8 40 76-119 42-81 (497)
166 PRK06134 putative FAD-binding 98.2 1E-06 2.2E-11 96.2 4.4 39 77-121 10-48 (581)
167 COG1635 THI4 Ribulose 1,5-bisp 98.2 1.6E-06 3.5E-11 79.2 4.8 38 80-123 31-68 (262)
168 PRK05249 soluble pyridine nucl 98.2 7.6E-06 1.6E-10 87.1 10.8 100 79-206 175-275 (461)
169 PRK06116 glutathione reductase 98.2 8E-06 1.7E-10 86.7 10.8 102 79-207 167-269 (450)
170 PRK07233 hypothetical protein; 98.2 7.5E-06 1.6E-10 86.3 10.6 37 81-123 1-37 (434)
171 TIGR00292 thiazole biosynthesi 98.2 9.9E-05 2.2E-09 71.7 17.5 180 245-449 22-253 (254)
172 TIGR01424 gluta_reduc_2 glutat 98.2 7.4E-06 1.6E-10 86.7 10.5 100 79-206 166-266 (446)
173 PRK06475 salicylate hydroxylas 98.2 1.6E-05 3.5E-10 83.0 12.8 34 80-119 3-36 (400)
174 TIGR01988 Ubi-OHases Ubiquinon 98.2 4.9E-06 1.1E-10 86.3 8.9 33 81-119 1-33 (385)
175 TIGR01984 UbiH 2-polyprenyl-6- 98.2 5E-06 1.1E-10 86.2 8.5 33 81-119 1-34 (382)
176 PRK05732 2-octaprenyl-6-methox 98.2 5.6E-06 1.2E-10 86.2 8.8 37 78-117 2-38 (395)
177 PRK06370 mercuric reductase; V 98.2 1.1E-05 2.4E-10 85.9 11.3 100 79-206 171-274 (463)
178 PRK05868 hypothetical protein; 98.2 1.4E-05 3.1E-10 82.5 11.5 34 80-119 2-35 (372)
179 PRK08013 oxidoreductase; Provi 98.2 7.2E-06 1.6E-10 85.6 9.4 35 79-119 3-37 (400)
180 TIGR01421 gluta_reduc_1 glutat 98.2 9.6E-06 2.1E-10 85.9 10.4 101 79-206 166-268 (450)
181 TIGR02733 desat_CrtD C-3',4' d 98.2 2.3E-05 5E-10 84.1 13.5 38 80-123 2-39 (492)
182 PRK06327 dihydrolipoamide dehy 98.2 1E-05 2.3E-10 86.3 10.7 101 79-207 183-288 (475)
183 TIGR02374 nitri_red_nirB nitri 98.2 7.8E-06 1.7E-10 92.3 10.1 100 79-205 140-240 (785)
184 PRK08132 FAD-dependent oxidore 98.1 2.2E-05 4.8E-10 85.4 13.4 37 77-119 21-57 (547)
185 TIGR02053 MerA mercuric reduct 98.1 1E-05 2.2E-10 86.2 10.5 101 79-207 166-270 (463)
186 PRK08244 hypothetical protein; 98.1 7.3E-06 1.6E-10 88.0 9.5 34 79-118 2-35 (493)
187 PRK08850 2-octaprenyl-6-methox 98.1 6.8E-06 1.5E-10 86.0 9.0 33 79-117 4-36 (405)
188 PRK12409 D-amino acid dehydrog 98.1 7.2E-05 1.6E-09 78.3 16.7 34 80-119 2-35 (410)
189 TIGR03169 Nterm_to_SelD pyridi 98.1 7.8E-06 1.7E-10 84.2 9.1 101 246-378 1-112 (364)
190 PRK07846 mycothione reductase; 98.1 1.5E-05 3.1E-10 84.5 11.1 100 79-207 166-266 (451)
191 KOG1336 Monodehydroascorbate/f 98.1 1E-05 2.2E-10 82.4 9.2 106 79-209 213-319 (478)
192 PRK07045 putative monooxygenas 98.1 1E-05 2.2E-10 84.1 9.6 37 78-120 4-40 (388)
193 PRK07845 flavoprotein disulfid 98.1 1.4E-05 3E-10 85.1 10.8 101 79-207 177-278 (466)
194 PRK06753 hypothetical protein; 98.1 7.4E-06 1.6E-10 84.6 8.5 33 81-119 2-34 (373)
195 PRK11259 solA N-methyltryptoph 98.1 1E-05 2.3E-10 83.6 9.5 35 78-118 2-36 (376)
196 PLN02507 glutathione reductase 98.1 1.4E-05 3.1E-10 85.6 10.7 101 79-207 203-304 (499)
197 PRK08849 2-octaprenyl-3-methyl 98.1 9.3E-06 2E-10 84.3 9.0 33 80-118 4-36 (384)
198 PRK07818 dihydrolipoamide dehy 98.1 1.5E-05 3.3E-10 84.9 10.7 100 79-206 172-276 (466)
199 PRK07588 hypothetical protein; 98.1 2.6E-05 5.6E-10 81.1 11.6 34 80-119 1-34 (391)
200 COG0446 HcaD Uncharacterized N 98.1 1.5E-05 3.1E-10 83.3 9.7 101 79-204 136-238 (415)
201 PF13450 NAD_binding_8: NAD(P) 98.1 5E-06 1.1E-10 63.1 4.4 32 84-121 1-32 (68)
202 TIGR01377 soxA_mon sarcosine o 98.1 1.2E-05 2.6E-10 83.3 8.8 33 80-118 1-33 (380)
203 PRK08401 L-aspartate oxidase; 98.1 1.9E-05 4.2E-10 83.9 10.5 55 393-448 310-365 (466)
204 COG1231 Monoamine oxidase [Ami 98.1 5.7E-05 1.2E-09 76.9 13.0 47 77-129 5-51 (450)
205 TIGR03140 AhpF alkyl hydropero 98.0 3.9E-05 8.4E-10 82.7 12.7 100 244-375 212-325 (515)
206 TIGR03452 mycothione_red mycot 98.0 2.5E-05 5.5E-10 82.7 11.0 100 79-207 169-269 (452)
207 PF13738 Pyr_redox_3: Pyridine 98.0 1.8E-05 3.9E-10 74.1 8.9 98 248-376 1-143 (203)
208 PRK14694 putative mercuric red 98.0 2.4E-05 5.2E-10 83.4 10.8 98 79-206 178-276 (468)
209 PRK14989 nitrite reductase sub 98.0 2.2E-05 4.8E-10 88.8 11.0 103 245-378 4-118 (847)
210 PRK15317 alkyl hydroperoxide r 98.0 4.8E-05 1E-09 82.1 13.1 100 244-375 211-324 (517)
211 COG3380 Predicted NAD/FAD-depe 98.0 1.1E-05 2.3E-10 76.2 6.9 33 80-118 2-34 (331)
212 TIGR01423 trypano_reduc trypan 98.0 2.7E-05 5.9E-10 83.0 10.9 104 79-206 187-291 (486)
213 PRK00711 D-amino acid dehydrog 98.0 0.00018 3.9E-09 75.5 17.0 32 81-118 2-33 (416)
214 PRK06996 hypothetical protein; 98.0 1.7E-05 3.7E-10 82.7 9.1 40 77-118 9-48 (398)
215 PRK13339 malate:quinone oxidor 98.0 2.9E-05 6.3E-10 82.3 10.9 41 77-121 4-44 (497)
216 PRK08243 4-hydroxybenzoate 3-m 98.0 2.3E-05 5E-10 81.6 10.1 35 79-119 2-36 (392)
217 TIGR03219 salicylate_mono sali 98.0 1.5E-05 3.3E-10 83.6 8.6 33 81-119 2-35 (414)
218 PRK06617 2-octaprenyl-6-methox 98.0 1.5E-05 3.2E-10 82.5 8.3 32 80-117 2-33 (374)
219 COG1635 THI4 Ribulose 1,5-bisp 98.0 0.00015 3.3E-09 66.6 13.6 178 245-450 31-260 (262)
220 PRK06115 dihydrolipoamide dehy 98.0 4E-05 8.7E-10 81.6 11.7 101 78-206 173-279 (466)
221 PRK08010 pyridine nucleotide-d 98.0 3.3E-05 7.2E-10 81.7 11.0 99 79-206 158-257 (441)
222 PTZ00318 NADH dehydrogenase-li 98.0 2.9E-05 6.3E-10 81.6 10.4 109 243-378 9-130 (424)
223 PF01946 Thi4: Thi4 family; PD 98.0 4.3E-06 9.3E-11 77.0 3.5 38 78-121 16-53 (230)
224 PRK06183 mhpA 3-(3-hydroxyphen 98.0 3.8E-05 8.2E-10 83.4 11.5 37 77-119 8-44 (538)
225 PRK11445 putative oxidoreducta 98.0 2.5E-05 5.4E-10 80.0 9.3 33 80-119 2-34 (351)
226 TIGR03364 HpnW_proposed FAD de 98.0 2.3E-05 5.1E-10 80.7 8.9 33 80-118 1-33 (365)
227 TIGR01320 mal_quin_oxido malat 98.0 0.00015 3.3E-09 77.3 15.2 36 80-119 1-36 (483)
228 TIGR01789 lycopene_cycl lycope 98.0 4.8E-05 1E-09 78.3 10.9 34 81-118 1-34 (370)
229 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 2.7E-05 6E-10 80.9 9.2 35 79-119 2-36 (390)
230 COG1232 HemY Protoporphyrinoge 98.0 3.2E-05 7E-10 80.2 9.5 39 80-122 1-39 (444)
231 PRK06126 hypothetical protein; 98.0 3.5E-05 7.7E-10 83.8 10.2 36 77-118 5-40 (545)
232 PF12831 FAD_oxidored: FAD dep 98.0 7.6E-06 1.7E-10 86.0 4.9 36 81-122 1-36 (428)
233 PTZ00058 glutathione reductase 98.0 4.2E-05 9.1E-10 82.7 10.6 101 79-206 237-339 (561)
234 COG1252 Ndh NADH dehydrogenase 97.9 3.2E-05 6.9E-10 79.1 9.1 100 244-376 3-114 (405)
235 PTZ00052 thioredoxin reductase 97.9 4.7E-05 1E-09 81.7 10.8 100 79-207 182-282 (499)
236 PRK06292 dihydrolipoamide dehy 97.9 4.5E-05 9.7E-10 81.2 10.6 102 78-207 168-272 (460)
237 PLN02172 flavin-containing mon 97.9 0.0001 2.2E-09 78.0 12.9 108 244-379 10-181 (461)
238 COG0665 DadA Glycine/D-amino a 97.9 4E-05 8.7E-10 79.5 9.7 36 77-118 2-37 (387)
239 COG2509 Uncharacterized FAD-de 97.9 0.00038 8.2E-09 70.8 16.0 73 278-379 163-235 (486)
240 PLN02612 phytoene desaturase 97.9 0.0005 1.1E-08 74.9 18.4 42 76-123 90-131 (567)
241 PLN02985 squalene monooxygenas 97.9 6.4E-05 1.4E-09 80.7 11.1 36 77-118 41-76 (514)
242 COG2907 Predicted NAD/FAD-bind 97.9 0.0004 8.7E-09 68.0 14.9 41 78-125 7-47 (447)
243 PRK06467 dihydrolipoamide dehy 97.9 6.1E-05 1.3E-09 80.3 10.1 99 79-206 174-277 (471)
244 PRK01747 mnmC bifunctional tRN 97.9 4.2E-05 9.1E-10 85.1 9.2 33 80-118 261-293 (662)
245 PLN02529 lysine-specific histo 97.9 9.2E-06 2E-10 89.6 3.8 58 47-123 141-198 (738)
246 PRK13748 putative mercuric red 97.9 6.7E-05 1.5E-09 82.0 10.6 98 79-206 270-368 (561)
247 PRK06847 hypothetical protein; 97.9 0.00015 3.2E-09 74.9 12.7 99 244-374 4-164 (375)
248 PRK06481 fumarate reductase fl 97.8 0.00015 3.3E-09 77.9 12.7 60 391-450 440-504 (506)
249 PRK14727 putative mercuric red 97.8 8E-05 1.7E-09 79.6 10.4 98 79-206 188-286 (479)
250 KOG0029 Amine oxidase [Seconda 97.8 1.7E-05 3.8E-10 84.0 5.2 45 75-125 11-55 (501)
251 PF04820 Trp_halogenase: Trypt 97.8 3.3E-05 7.2E-10 81.6 7.2 35 81-118 1-35 (454)
252 PLN02661 Putative thiazole syn 97.8 0.00042 9.2E-09 69.6 14.5 180 245-451 93-329 (357)
253 PF07992 Pyr_redox_2: Pyridine 97.8 1.9E-05 4.1E-10 73.8 4.6 149 246-419 1-199 (201)
254 TIGR01438 TGR thioredoxin and 97.8 9.3E-05 2E-09 79.0 10.4 99 79-206 180-282 (484)
255 PTZ00153 lipoamide dehydrogena 97.8 8.7E-05 1.9E-09 81.5 10.1 103 79-207 312-431 (659)
256 PRK09853 putative selenate red 97.8 0.00011 2.5E-09 83.2 10.8 66 243-311 538-612 (1019)
257 PRK07236 hypothetical protein; 97.8 0.00016 3.4E-09 75.2 11.1 36 244-282 6-41 (386)
258 PLN02546 glutathione reductase 97.8 0.00013 2.7E-09 79.1 10.5 101 79-206 252-353 (558)
259 KOG2820 FAD-dependent oxidored 97.8 9.3E-05 2E-09 72.1 8.2 36 77-118 5-40 (399)
260 PRK12779 putative bifunctional 97.8 8E-05 1.7E-09 85.2 9.2 93 242-374 304-406 (944)
261 PRK11749 dihydropyrimidine deh 97.8 7.1E-05 1.5E-09 79.6 8.2 66 243-311 139-213 (457)
262 TIGR01373 soxB sarcosine oxida 97.7 0.00014 2.9E-09 76.2 9.9 37 77-118 28-65 (407)
263 PRK06175 L-aspartate oxidase; 97.7 0.00084 1.8E-08 70.7 15.8 36 78-120 3-38 (433)
264 PRK10262 thioredoxin reductase 97.7 0.00035 7.5E-09 70.6 12.5 99 244-376 6-120 (321)
265 TIGR01989 COQ6 Ubiquinone bios 97.7 0.00018 4E-09 75.9 10.9 36 80-117 1-36 (437)
266 PTZ00367 squalene epoxidase; P 97.7 0.00016 3.4E-09 78.3 10.2 36 77-118 31-66 (567)
267 PRK12770 putative glutamate sy 97.7 0.00014 3E-09 74.6 9.4 69 244-315 18-95 (352)
268 TIGR02032 GG-red-SF geranylger 97.7 0.00025 5.5E-09 70.3 11.0 97 246-373 2-148 (295)
269 TIGR01316 gltA glutamate synth 97.7 0.00011 2.4E-09 77.8 8.7 66 243-311 132-206 (449)
270 TIGR01318 gltD_gamma_fam gluta 97.7 0.00014 2.9E-09 77.5 8.9 66 243-311 140-214 (467)
271 PRK05945 sdhA succinate dehydr 97.7 0.00014 3.1E-09 79.4 9.2 59 393-451 351-415 (575)
272 PLN02852 ferredoxin-NADP+ redu 97.6 0.00021 4.5E-09 75.7 9.6 65 244-311 26-102 (491)
273 PTZ00363 rab-GDP dissociation 97.6 0.0019 4E-08 67.9 16.6 40 78-123 3-42 (443)
274 PRK06834 hypothetical protein; 97.6 0.00049 1.1E-08 73.6 12.5 98 245-374 4-157 (488)
275 PRK12831 putative oxidoreducta 97.6 0.00018 4E-09 76.4 9.2 67 242-311 138-214 (464)
276 COG0493 GltD NADPH-dependent g 97.6 0.00029 6.2E-09 73.9 10.5 66 244-312 123-197 (457)
277 COG1233 Phytoene dehydrogenase 97.6 5.7E-05 1.2E-09 80.7 5.2 41 78-124 2-42 (487)
278 TIGR01317 GOGAT_sm_gam glutama 97.6 0.00022 4.8E-09 76.2 9.2 67 243-312 142-217 (485)
279 PRK07208 hypothetical protein; 97.6 6.9E-05 1.5E-09 80.2 5.3 41 77-123 2-42 (479)
280 PRK11883 protoporphyrinogen ox 97.6 6.2E-05 1.4E-09 79.8 4.7 40 80-123 1-40 (451)
281 TIGR03143 AhpF_homolog putativ 97.6 0.00063 1.4E-08 74.0 12.3 99 245-378 5-119 (555)
282 PLN02328 lysine-specific histo 97.6 7.9E-05 1.7E-09 82.8 5.1 42 76-123 235-276 (808)
283 PLN02268 probable polyamine ox 97.5 8.6E-05 1.9E-09 78.4 5.1 40 80-125 1-40 (435)
284 KOG2415 Electron transfer flav 97.5 9.5E-05 2.1E-09 73.7 4.8 48 77-124 74-121 (621)
285 PRK12778 putative bifunctional 97.5 0.00025 5.5E-09 80.1 8.9 66 243-311 430-504 (752)
286 COG3349 Uncharacterized conser 97.5 8.3E-05 1.8E-09 77.1 4.6 40 80-125 1-40 (485)
287 COG0445 GidA Flavin-dependent 97.5 0.0001 2.2E-09 76.4 4.9 46 400-454 352-397 (621)
288 PRK06184 hypothetical protein; 97.5 0.00094 2E-08 71.9 12.4 101 245-374 4-169 (502)
289 PF01134 GIDA: Glucose inhibit 97.5 0.00069 1.5E-08 69.2 10.5 94 246-371 1-150 (392)
290 PLN02463 lycopene beta cyclase 97.5 0.00079 1.7E-08 70.9 11.4 96 246-374 30-170 (447)
291 PRK12810 gltD glutamate syntha 97.5 0.00036 7.8E-09 74.4 8.7 66 243-311 142-216 (471)
292 PRK08244 hypothetical protein; 97.5 0.00099 2.1E-08 71.6 12.2 99 246-374 4-160 (493)
293 PRK12775 putative trifunctiona 97.5 0.00033 7.1E-09 81.0 8.9 66 243-311 429-503 (1006)
294 PRK07333 2-octaprenyl-6-methox 97.5 0.00092 2E-08 69.8 11.5 54 292-374 115-168 (403)
295 PLN02576 protoporphyrinogen ox 97.5 0.00013 2.9E-09 78.4 5.2 41 78-124 11-52 (496)
296 PRK08163 salicylate hydroxylas 97.4 0.0012 2.6E-08 68.8 12.1 35 244-281 4-38 (396)
297 TIGR00562 proto_IX_ox protopor 97.4 0.00012 2.7E-09 77.9 4.8 43 79-123 2-44 (462)
298 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00014 3.1E-09 74.8 4.7 60 398-466 321-381 (436)
299 TIGR03315 Se_ygfK putative sel 97.4 0.00044 9.6E-09 78.8 9.0 64 243-309 536-608 (1012)
300 PRK01438 murD UDP-N-acetylmura 97.4 0.00033 7.1E-09 75.0 7.6 87 78-214 15-101 (480)
301 KOG2853 Possible oxidoreductas 97.4 0.00049 1.1E-08 67.1 7.9 39 78-118 85-123 (509)
302 KOG1335 Dihydrolipoamide dehyd 97.4 0.00045 9.7E-09 68.5 7.7 103 78-207 210-318 (506)
303 PRK12809 putative oxidoreducta 97.4 0.00049 1.1E-08 76.2 8.9 66 243-311 309-383 (639)
304 PF06100 Strep_67kDa_ant: Stre 97.4 0.00099 2.2E-08 69.1 10.1 39 79-119 2-40 (500)
305 PRK07588 hypothetical protein; 97.4 0.0014 3E-08 68.3 11.5 33 246-281 2-34 (391)
306 PRK09897 hypothetical protein; 97.4 0.0017 3.7E-08 69.7 12.2 37 245-282 2-38 (534)
307 TIGR01176 fum_red_Fp fumarate 97.4 0.00078 1.7E-08 73.5 9.9 58 393-451 357-415 (580)
308 PRK12814 putative NADPH-depend 97.4 0.00056 1.2E-08 75.8 8.8 66 243-311 192-266 (652)
309 PRK12769 putative oxidoreducta 97.3 0.0006 1.3E-08 75.8 8.7 66 243-311 326-400 (654)
310 PLN02487 zeta-carotene desatur 97.3 0.00058 1.3E-08 73.9 8.2 38 78-121 74-111 (569)
311 KOG2614 Kynurenine 3-monooxyge 97.3 0.00047 1E-08 69.4 6.8 34 79-118 2-35 (420)
312 PRK05714 2-octaprenyl-3-methyl 97.3 0.00091 2E-08 69.9 9.3 32 246-280 4-35 (405)
313 PRK05868 hypothetical protein; 97.3 0.0018 3.9E-08 66.9 11.3 35 245-282 2-36 (372)
314 PRK07364 2-octaprenyl-6-methox 97.3 0.0024 5.2E-08 66.9 12.3 34 245-281 19-52 (415)
315 PRK01438 murD UDP-N-acetylmura 97.3 0.00059 1.3E-08 73.0 7.8 81 244-379 16-96 (480)
316 PRK12416 protoporphyrinogen ox 97.3 0.00024 5.3E-09 75.6 4.7 46 80-125 2-47 (463)
317 PRK07538 hypothetical protein; 97.3 0.00025 5.3E-09 74.4 4.6 34 80-119 1-34 (413)
318 PF00743 FMO-like: Flavin-bind 97.3 0.0014 3E-08 70.6 10.3 144 245-418 2-194 (531)
319 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.0021 4.5E-08 66.6 11.4 33 246-281 1-34 (382)
320 PRK07190 hypothetical protein; 97.3 0.003 6.4E-08 67.6 12.7 97 245-373 6-165 (487)
321 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00035 7.5E-09 71.6 5.2 36 80-121 2-37 (377)
322 PLN02661 Putative thiazole syn 97.3 0.00038 8.2E-09 70.0 5.4 40 76-120 89-128 (357)
323 PRK12266 glpD glycerol-3-phosp 97.3 0.00033 7.2E-09 75.3 5.4 37 77-119 4-40 (508)
324 PTZ00188 adrenodoxin reductase 97.2 0.0014 2.9E-08 68.8 9.5 65 244-311 39-114 (506)
325 PRK13369 glycerol-3-phosphate 97.2 0.00036 7.8E-09 75.0 5.3 38 76-119 3-40 (502)
326 TIGR02731 phytoene_desat phyto 97.2 0.00032 7E-09 74.5 4.8 37 81-123 1-37 (453)
327 PRK08294 phenol 2-monooxygenas 97.2 0.00055 1.2E-08 75.5 6.5 37 77-118 30-66 (634)
328 TIGR01789 lycopene_cycl lycope 97.2 0.0016 3.5E-08 67.1 9.5 37 246-283 1-37 (370)
329 KOG0685 Flavin-containing amin 97.2 0.00035 7.7E-09 71.3 4.5 42 77-123 19-60 (498)
330 PLN02927 antheraxanthin epoxid 97.2 0.00038 8.2E-09 76.1 5.0 36 77-118 79-114 (668)
331 PRK12771 putative glutamate sy 97.2 0.0012 2.7E-08 72.0 8.7 67 242-311 135-210 (564)
332 TIGR01372 soxA sarcosine oxida 97.2 0.0042 9.1E-08 72.2 13.5 70 244-316 163-244 (985)
333 PRK09126 hypothetical protein; 97.2 0.0037 8E-08 65.0 12.0 33 246-281 5-37 (392)
334 PLN02568 polyamine oxidase 97.2 0.00049 1.1E-08 74.2 5.5 45 78-123 4-48 (539)
335 PRK08274 tricarballylate dehyd 97.2 0.00044 9.5E-09 73.8 5.1 59 392-450 398-462 (466)
336 PRK13984 putative oxidoreducta 97.1 0.0014 3E-08 72.3 8.8 66 243-311 282-356 (604)
337 TIGR01988 Ubi-OHases Ubiquinon 97.1 0.0036 7.8E-08 64.8 11.5 33 246-281 1-33 (385)
338 PRK07608 ubiquinone biosynthes 97.1 0.0032 7E-08 65.3 11.0 34 245-281 6-39 (388)
339 PRK06183 mhpA 3-(3-hydroxyphen 97.1 0.0045 9.7E-08 67.3 12.4 32 245-279 11-42 (538)
340 COG0492 TrxB Thioredoxin reduc 97.1 0.0054 1.2E-07 61.1 11.8 99 245-376 4-118 (305)
341 COG0654 UbiH 2-polyprenyl-6-me 97.1 0.0044 9.5E-08 64.4 11.8 99 245-374 3-163 (387)
342 PRK06753 hypothetical protein; 97.1 0.0033 7.2E-08 64.8 10.8 33 246-281 2-34 (373)
343 PF00890 FAD_binding_2: FAD bi 97.1 0.00058 1.3E-08 71.7 4.9 34 81-120 1-34 (417)
344 PRK08013 oxidoreductase; Provi 97.1 0.0044 9.5E-08 64.7 11.4 34 245-281 4-37 (400)
345 PLN02676 polyamine oxidase 97.1 0.00069 1.5E-08 72.4 5.4 41 77-123 24-65 (487)
346 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.0027 5.8E-08 66.0 9.6 33 245-280 6-38 (391)
347 PRK07121 hypothetical protein; 97.0 0.00093 2E-08 71.7 6.2 37 78-120 19-55 (492)
348 TIGR02730 carot_isom carotene 97.0 0.00076 1.6E-08 72.5 5.1 36 80-121 1-36 (493)
349 COG2072 TrkA Predicted flavopr 97.0 0.027 5.9E-07 59.4 16.6 140 244-418 8-186 (443)
350 COG1251 NirB NAD(P)H-nitrite r 97.0 0.0039 8.4E-08 67.2 10.0 104 245-379 4-119 (793)
351 PRK06996 hypothetical protein; 97.0 0.0056 1.2E-07 63.8 11.4 101 245-371 12-172 (398)
352 TIGR01790 carotene-cycl lycope 97.0 0.0056 1.2E-07 63.5 11.3 96 246-373 1-141 (388)
353 PRK06617 2-octaprenyl-6-methox 97.0 0.0064 1.4E-07 62.8 11.4 31 246-279 3-33 (374)
354 PLN02697 lycopene epsilon cycl 97.0 0.0061 1.3E-07 65.5 11.4 97 245-373 109-248 (529)
355 PRK11101 glpA sn-glycerol-3-ph 96.9 0.00097 2.1E-08 72.4 5.3 36 78-119 5-40 (546)
356 KOG0399 Glutamate synthase [Am 96.9 0.0021 4.5E-08 71.5 7.5 91 243-374 1784-1883(2142)
357 TIGR01813 flavo_cyto_c flavocy 96.9 0.00092 2E-08 70.7 4.9 34 81-120 1-35 (439)
358 PF06039 Mqo: Malate:quinone o 96.9 0.0006 1.3E-08 70.0 3.1 69 289-381 182-251 (488)
359 TIGR02732 zeta_caro_desat caro 96.9 0.00089 1.9E-08 71.4 4.6 36 81-122 1-36 (474)
360 PRK06567 putative bifunctional 96.9 0.0029 6.3E-08 71.3 8.6 35 242-279 381-415 (1028)
361 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.00091 2E-08 69.3 4.4 60 399-467 321-381 (433)
362 PRK10015 oxidoreductase; Provi 96.9 0.009 2E-07 62.9 11.9 31 246-279 7-37 (429)
363 PRK08849 2-octaprenyl-3-methyl 96.9 0.0087 1.9E-07 62.1 11.7 32 246-280 5-36 (384)
364 KOG2852 Possible oxidoreductas 96.9 0.0037 7.9E-08 59.9 7.8 42 77-118 8-49 (380)
365 KOG1298 Squalene monooxygenase 96.9 0.0029 6.2E-08 63.0 7.1 36 77-118 43-78 (509)
366 PRK08255 salicylyl-CoA 5-hydro 96.9 0.001 2.2E-08 75.2 4.7 36 80-119 1-36 (765)
367 PRK07045 putative monooxygenas 96.8 0.011 2.3E-07 61.5 12.0 34 245-281 6-39 (388)
368 PRK06126 hypothetical protein; 96.8 0.013 2.7E-07 63.9 12.8 33 244-279 7-39 (545)
369 PRK08243 4-hydroxybenzoate 3-m 96.8 0.012 2.5E-07 61.3 12.0 33 245-280 3-35 (392)
370 PF13454 NAD_binding_9: FAD-NA 96.8 0.013 2.8E-07 52.5 10.6 32 248-279 1-34 (156)
371 PRK05257 malate:quinone oxidor 96.8 0.0014 3E-08 70.0 5.1 38 78-119 4-41 (494)
372 PRK08641 sdhA succinate dehydr 96.8 0.0013 2.7E-08 72.2 4.7 59 392-451 354-412 (589)
373 PRK05192 tRNA uridine 5-carbox 96.8 0.0075 1.6E-07 65.2 10.4 31 246-279 6-36 (618)
374 PRK07494 2-octaprenyl-6-methox 96.8 0.0097 2.1E-07 61.8 11.1 34 245-281 8-41 (388)
375 PRK07538 hypothetical protein; 96.8 0.014 3.1E-07 61.1 12.3 33 246-281 2-34 (413)
376 KOG1276 Protoporphyrinogen oxi 96.8 0.0018 3.9E-08 65.3 5.1 41 77-121 9-49 (491)
377 PRK08850 2-octaprenyl-6-methox 96.8 0.011 2.4E-07 61.7 11.4 32 245-279 5-36 (405)
378 KOG1346 Programmed cell death 96.8 0.0027 6E-08 63.5 6.2 107 77-206 345-452 (659)
379 PRK05732 2-octaprenyl-6-methox 96.7 0.013 2.8E-07 60.9 11.7 32 245-279 4-38 (395)
380 PRK12834 putative FAD-binding 96.7 0.0017 3.6E-08 70.7 5.1 35 78-118 3-37 (549)
381 PLN02464 glycerol-3-phosphate 96.7 0.0018 3.9E-08 71.4 5.2 36 78-119 70-105 (627)
382 KOG2311 NAD/FAD-utilizing prot 96.7 0.0017 3.7E-08 66.1 4.5 46 400-454 381-426 (679)
383 PRK12837 3-ketosteroid-delta-1 96.7 0.0017 3.7E-08 70.0 4.6 34 79-119 7-40 (513)
384 TIGR03219 salicylate_mono sali 96.7 0.011 2.4E-07 62.0 10.6 34 246-282 2-36 (414)
385 PF05834 Lycopene_cycl: Lycope 96.7 0.011 2.4E-07 61.1 10.4 97 247-374 2-143 (374)
386 PF00732 GMC_oxred_N: GMC oxid 96.7 0.0018 3.8E-08 64.6 4.4 37 80-121 1-37 (296)
387 PRK07057 sdhA succinate dehydr 96.7 0.0018 3.8E-08 71.0 4.7 35 78-118 11-45 (591)
388 PRK07803 sdhA succinate dehydr 96.6 0.0017 3.7E-08 71.6 4.2 59 393-451 391-449 (626)
389 TIGR00137 gid_trmFO tRNA:m(5)U 96.6 0.0039 8.5E-08 64.7 6.6 35 246-283 2-36 (433)
390 TIGR01812 sdhA_frdA_Gneg succi 96.6 0.0018 4E-08 70.7 4.4 58 392-450 341-403 (566)
391 KOG2495 NADH-dehydrogenase (ub 96.6 0.036 7.7E-07 56.3 12.9 105 244-375 55-172 (491)
392 PRK06452 sdhA succinate dehydr 96.6 0.0021 4.5E-08 70.2 4.7 59 393-451 346-405 (566)
393 PRK12839 hypothetical protein; 96.6 0.0029 6.3E-08 69.0 5.8 40 76-121 5-44 (572)
394 PLN03000 amine oxidase 96.6 0.0027 5.9E-08 71.0 5.6 42 77-124 182-223 (881)
395 PRK06854 adenylylsulfate reduc 96.6 0.002 4.4E-08 70.8 4.4 45 400-451 389-433 (608)
396 TIGR02023 BchP-ChlP geranylger 96.6 0.023 4.9E-07 59.1 12.1 31 246-279 2-32 (388)
397 TIGR02028 ChlP geranylgeranyl 96.6 0.026 5.5E-07 58.9 12.4 32 246-280 2-33 (398)
398 PRK07573 sdhA succinate dehydr 96.6 0.0031 6.7E-08 69.7 5.7 51 393-444 406-456 (640)
399 KOG1399 Flavin-containing mono 96.5 0.019 4.1E-07 60.2 11.1 140 244-418 6-197 (448)
400 PTZ00139 Succinate dehydrogena 96.5 0.0023 4.9E-08 70.5 4.5 36 78-119 28-63 (617)
401 PRK08275 putative oxidoreducta 96.5 0.0025 5.3E-08 69.5 4.7 51 393-451 356-406 (554)
402 PRK09078 sdhA succinate dehydr 96.5 0.0023 5E-08 70.2 4.5 35 78-118 11-45 (598)
403 PF04820 Trp_halogenase: Trypt 96.5 0.017 3.7E-07 61.2 10.8 34 246-279 1-34 (454)
404 PRK12835 3-ketosteroid-delta-1 96.5 0.0027 5.9E-08 69.4 4.7 36 78-119 10-45 (584)
405 PLN00128 Succinate dehydrogena 96.5 0.0026 5.6E-08 70.1 4.4 36 78-119 49-84 (635)
406 PRK11445 putative oxidoreducta 96.5 0.031 6.8E-07 57.2 12.2 31 246-280 3-33 (351)
407 COG0562 Glf UDP-galactopyranos 96.5 0.004 8.6E-08 60.7 5.0 36 79-120 1-36 (374)
408 PRK08958 sdhA succinate dehydr 96.5 0.0029 6.3E-08 69.3 4.7 35 79-119 7-41 (588)
409 PRK12845 3-ketosteroid-delta-1 96.5 0.0043 9.3E-08 67.5 6.0 42 76-124 13-54 (564)
410 TIGR02061 aprA adenosine phosp 96.5 0.0028 6.1E-08 69.3 4.5 45 400-451 400-444 (614)
411 PRK06069 sdhA succinate dehydr 96.4 0.0027 5.8E-08 69.5 4.3 58 393-451 352-416 (577)
412 TIGR01377 soxA_mon sarcosine o 96.4 0.029 6.3E-07 57.9 11.9 32 246-280 2-33 (380)
413 PF12831 FAD_oxidored: FAD dep 96.4 0.002 4.4E-08 67.8 3.1 98 246-371 1-148 (428)
414 PRK12844 3-ketosteroid-delta-1 96.4 0.0036 7.8E-08 68.1 4.8 35 79-119 6-40 (557)
415 TIGR01470 cysG_Nterm siroheme 96.4 0.011 2.3E-07 55.5 7.2 35 78-118 8-42 (205)
416 PRK08626 fumarate reductase fl 96.3 0.0033 7.2E-08 69.6 4.4 59 393-451 372-431 (657)
417 KOG2665 Predicted FAD-dependen 96.3 0.0083 1.8E-07 58.2 6.4 38 77-118 46-83 (453)
418 PLN02815 L-aspartate oxidase 96.3 0.0052 1.1E-07 67.1 5.8 56 393-449 377-433 (594)
419 TIGR01989 COQ6 Ubiquinone bios 96.3 0.031 6.7E-07 59.1 11.1 30 246-278 2-35 (437)
420 TIGR00136 gidA glucose-inhibit 96.3 0.03 6.4E-07 60.6 10.8 31 246-279 2-32 (617)
421 KOG2404 Fumarate reductase, fl 96.2 0.015 3.2E-07 56.6 7.5 32 81-118 11-42 (477)
422 PF01946 Thi4: Thi4 family; PD 96.2 0.094 2E-06 48.8 12.3 107 245-374 18-166 (230)
423 PRK09077 L-aspartate oxidase; 96.2 0.0059 1.3E-07 66.2 5.3 57 393-450 353-410 (536)
424 PF13434 K_oxygenase: L-lysine 96.2 0.0076 1.6E-07 61.3 5.7 40 76-119 187-226 (341)
425 PLN02976 amine oxidase 96.2 0.0057 1.2E-07 71.2 5.2 40 77-122 691-730 (1713)
426 COG4529 Uncharacterized protei 96.2 0.045 9.8E-07 56.7 11.1 38 245-282 2-39 (474)
427 PRK11259 solA N-methyltryptoph 96.2 0.05 1.1E-06 56.1 11.7 32 246-280 5-36 (376)
428 PRK07395 L-aspartate oxidase; 96.1 0.0053 1.1E-07 66.7 4.5 54 393-447 347-401 (553)
429 PRK01747 mnmC bifunctional tRN 96.1 0.031 6.7E-07 62.4 10.6 33 245-280 261-293 (662)
430 PRK14106 murD UDP-N-acetylmura 96.1 0.01 2.2E-07 63.0 6.4 35 78-118 4-38 (450)
431 COG1148 HdrA Heterodisulfide r 96.1 0.013 2.8E-07 60.2 6.6 72 244-318 124-208 (622)
432 TIGR01811 sdhA_Bsu succinate d 96.1 0.0044 9.6E-08 68.0 3.7 56 393-449 370-425 (603)
433 PRK12843 putative FAD-binding 96.1 0.0098 2.1E-07 65.1 6.3 39 78-122 15-53 (578)
434 TIGR02360 pbenz_hydroxyl 4-hyd 96.1 0.064 1.4E-06 55.7 12.1 34 245-281 3-36 (390)
435 PRK02106 choline dehydrogenase 96.1 0.0075 1.6E-07 65.9 5.3 37 78-119 4-40 (560)
436 PLN00093 geranylgeranyl diphos 96.1 0.07 1.5E-06 56.5 12.4 33 245-280 40-72 (450)
437 TIGR02462 pyranose_ox pyranose 96.1 0.0066 1.4E-07 65.2 4.6 36 80-121 1-36 (544)
438 PRK08205 sdhA succinate dehydr 96.0 0.0061 1.3E-07 66.8 4.4 58 393-450 356-419 (583)
439 PTZ00306 NADH-dependent fumara 96.0 0.0073 1.6E-07 71.4 5.4 39 77-121 407-445 (1167)
440 PRK08294 phenol 2-monooxygenas 96.0 0.065 1.4E-06 59.3 12.4 32 245-279 33-65 (634)
441 COG0578 GlpA Glycerol-3-phosph 96.0 0.0084 1.8E-07 63.5 5.0 38 78-121 11-48 (532)
442 PRK06481 fumarate reductase fl 96.0 0.065 1.4E-06 57.7 11.9 32 246-280 63-94 (506)
443 PRK11101 glpA sn-glycerol-3-ph 95.9 0.074 1.6E-06 57.8 12.3 32 245-279 7-38 (546)
444 PRK13800 putative oxidoreducta 95.9 0.0072 1.6E-07 69.6 4.5 51 393-451 361-411 (897)
445 COG1053 SdhA Succinate dehydro 95.9 0.0082 1.8E-07 64.8 4.6 62 393-455 355-418 (562)
446 KOG2960 Protein involved in th 95.8 0.0027 5.9E-08 57.9 0.5 36 80-119 77-112 (328)
447 KOG3851 Sulfide:quinone oxidor 95.6 0.015 3.3E-07 56.5 4.4 103 245-380 40-152 (446)
448 PLN02927 antheraxanthin epoxid 95.5 0.096 2.1E-06 57.7 11.0 34 244-280 81-114 (668)
449 COG3573 Predicted oxidoreducta 95.4 0.022 4.9E-07 55.7 5.1 36 78-119 4-39 (552)
450 COG3634 AhpF Alkyl hydroperoxi 95.4 0.035 7.6E-07 54.7 6.4 103 244-372 211-324 (520)
451 KOG3923 D-aspartate oxidase [A 95.4 0.043 9.2E-07 53.1 6.9 41 78-118 2-43 (342)
452 KOG0404 Thioredoxin reductase 95.4 0.1 2.2E-06 48.4 9.0 101 245-379 9-130 (322)
453 PRK07512 L-aspartate oxidase; 95.4 0.016 3.4E-07 62.6 4.4 57 393-450 341-398 (513)
454 KOG2755 Oxidoreductase [Genera 95.4 0.022 4.8E-07 54.0 4.6 95 246-375 1-106 (334)
455 PRK12266 glpD glycerol-3-phosp 95.4 0.13 2.7E-06 55.6 11.2 32 245-279 7-38 (508)
456 TIGR01810 betA choline dehydro 95.2 0.019 4.2E-07 62.2 4.3 33 81-119 1-34 (532)
457 TIGR03364 HpnW_proposed FAD de 95.2 0.16 3.4E-06 52.2 10.8 31 246-279 2-32 (365)
458 COG2303 BetA Choline dehydroge 95.2 0.024 5.1E-07 61.5 4.8 37 77-119 5-41 (542)
459 TIGR01813 flavo_cyto_c flavocy 95.1 0.19 4.1E-06 53.1 11.6 30 247-279 2-32 (439)
460 PF13241 NAD_binding_7: Putati 95.0 0.032 6.9E-07 46.0 4.1 35 78-118 6-40 (103)
461 PRK08274 tricarballylate dehyd 95.0 0.24 5.2E-06 52.8 12.0 32 246-280 6-37 (466)
462 TIGR03329 Phn_aa_oxid putative 94.9 0.24 5.2E-06 52.7 11.6 31 246-279 26-58 (460)
463 COG0445 GidA Flavin-dependent 94.9 0.044 9.5E-07 57.4 5.7 24 246-269 6-29 (621)
464 PRK07121 hypothetical protein; 94.9 0.24 5.1E-06 53.3 11.6 32 246-280 22-53 (492)
465 PF01210 NAD_Gly3P_dh_N: NAD-d 94.8 0.04 8.7E-07 49.3 4.6 32 81-118 1-32 (157)
466 PRK13369 glycerol-3-phosphate 94.8 0.3 6.6E-06 52.6 12.0 32 245-279 7-38 (502)
467 PRK06719 precorrin-2 dehydroge 94.6 0.061 1.3E-06 48.1 5.1 34 78-117 12-45 (157)
468 PRK08255 salicylyl-CoA 5-hydro 94.6 0.12 2.6E-06 58.6 8.7 33 246-281 2-36 (765)
469 PLN02985 squalene monooxygenas 94.6 0.44 9.6E-06 51.4 12.6 34 244-280 43-76 (514)
470 COG3380 Predicted NAD/FAD-depe 94.5 0.11 2.4E-06 49.7 6.8 34 246-282 3-36 (331)
471 PF00890 FAD_binding_2: FAD bi 94.5 0.25 5.4E-06 51.8 10.4 30 247-279 2-31 (417)
472 PRK14106 murD UDP-N-acetylmura 94.5 0.092 2E-06 55.7 7.1 56 244-309 5-60 (450)
473 TIGR02485 CobZ_N-term precorri 94.4 0.028 6E-07 59.3 3.0 58 392-449 367-430 (432)
474 TIGR03862 flavo_PP4765 unchara 94.3 0.32 6.9E-06 50.0 10.3 79 265-373 61-141 (376)
475 KOG2820 FAD-dependent oxidored 94.3 0.44 9.6E-06 47.2 10.6 56 293-374 158-213 (399)
476 PLN02785 Protein HOTHEAD 94.1 0.068 1.5E-06 58.4 5.2 36 77-119 53-88 (587)
477 COG0569 TrkA K+ transport syst 93.9 0.067 1.5E-06 51.0 4.2 34 80-119 1-34 (225)
478 KOG2844 Dimethylglycine dehydr 93.7 0.17 3.6E-06 54.3 7.0 36 76-117 36-72 (856)
479 COG1004 Ugd Predicted UDP-gluc 93.7 0.17 3.7E-06 51.3 6.7 71 80-156 1-83 (414)
480 PRK06718 precorrin-2 dehydroge 93.6 0.11 2.4E-06 48.5 5.1 34 78-117 9-42 (202)
481 PRK02705 murD UDP-N-acetylmura 93.6 0.08 1.7E-06 56.3 4.7 33 81-119 2-34 (459)
482 PF13450 NAD_binding_8: NAD(P) 93.6 0.085 1.9E-06 39.8 3.5 32 249-283 1-32 (68)
483 KOG4254 Phytoene desaturase [C 93.6 0.071 1.5E-06 54.5 3.8 56 288-371 264-319 (561)
484 TIGR01470 cysG_Nterm siroheme 93.5 0.22 4.7E-06 46.7 6.7 33 244-279 9-41 (205)
485 COG1206 Gid NAD(FAD)-utilizing 93.3 0.077 1.7E-06 52.1 3.5 49 398-455 325-373 (439)
486 KOG2311 NAD/FAD-utilizing prot 93.3 0.28 6.1E-06 50.6 7.5 25 245-269 29-53 (679)
487 KOG0405 Pyridine nucleotide-di 93.2 0.16 3.4E-06 50.4 5.4 104 76-206 186-290 (478)
488 PF02737 3HCDH_N: 3-hydroxyacy 93.2 0.11 2.4E-06 47.7 4.2 33 81-119 1-33 (180)
489 KOG1238 Glucose dehydrogenase/ 93.1 0.13 2.9E-06 55.1 5.2 40 76-120 54-93 (623)
490 PF01494 FAD_binding_3: FAD bi 93.1 0.12 2.6E-06 52.4 4.8 36 246-284 3-38 (356)
491 TIGR00551 nadB L-aspartate oxi 92.8 0.86 1.9E-05 48.9 11.1 30 246-279 4-33 (488)
492 PRK07804 L-aspartate oxidase; 92.7 1.1 2.4E-05 48.7 11.7 32 246-280 18-49 (541)
493 PRK15116 sulfur acceptor prote 92.6 0.096 2.1E-06 51.0 3.2 36 78-118 29-64 (268)
494 PF03721 UDPG_MGDP_dh_N: UDP-g 92.5 0.14 3.1E-06 47.1 4.0 34 80-119 1-34 (185)
495 PRK05335 tRNA (uracil-5-)-meth 92.5 0.14 3E-06 53.2 4.2 35 245-282 3-37 (436)
496 PRK06475 salicylate hydroxylas 92.5 0.19 4.1E-06 52.4 5.4 35 245-282 3-37 (400)
497 PF01262 AlaDh_PNT_C: Alanine 92.3 0.22 4.7E-06 45.1 4.9 35 78-118 19-53 (168)
498 PRK06718 precorrin-2 dehydroge 92.2 0.31 6.8E-06 45.5 6.0 32 244-278 10-41 (202)
499 KOG0042 Glycerol-3-phosphate d 92.1 0.072 1.6E-06 55.6 1.6 37 77-119 65-101 (680)
500 KOG1800 Ferredoxin/adrenodoxin 91.9 0.48 1E-05 47.6 7.0 66 245-311 21-96 (468)
No 1
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=7.9e-64 Score=502.42 Aligned_cols=383 Identities=37% Similarity=0.570 Sum_probs=346.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCC-cEEEE
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG-VQFFK 156 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~-v~~~~ 156 (538)
++++|||||||++|+.+|..|.+.. ++.+|||||++++|.|+|+++++..|.++.+++..+++.+++..+ ++|++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~ 77 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ 77 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE
Confidence 4589999999999999999999842 268999999999999999999999999999999999999998665 99999
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHH-HHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~-~~~ 235 (538)
++|++||.+.+ +|.++++..+.||+||+|+|+.+..+++||+.|+.+.+++.+|+.+++.++. .++
T Consensus 78 ~~V~~ID~~~k-------------~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 78 GEVTDIDRDAK-------------KVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred EEEEEEcccCC-------------EEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999887 5888887789999999999999999999999999999999999999999875 455
Q ss_pred HhccCCC--CCCeEEEECCChhHHHHHHHHHHHHHh--------c--CcEEEEecCCccCCCCChhhHHHHHHHHHhCCC
Q 009310 236 RRNFGKD--SLIRVAVVGCGYSGVELAATVSERLEE--------K--GIVQAINVETTICPTGTPGNREAALKVLSARKV 303 (538)
Q Consensus 236 ~~~~~~~--~~~~VvVVGgG~~g~E~A~~l~~~~~~--------~--~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV 303 (538)
......+ ...+|+|||||++|+|+|.+|.++.++ . -+|++|++.++++|.++++++.++++.|+++||
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV 224 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGV 224 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCC
Confidence 4442222 345899999999999999999998763 1 159999999999999999999999999999999
Q ss_pred EEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcce-EEeccEEEEecCCCCCCCCCCCCC
Q 009310 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ-IFEADLVLWTVGSKPLLPHVEPPN 382 (538)
Q Consensus 304 ~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~-~l~~D~vI~a~G~~p~~~~l~~~~ 382 (538)
++++++.|+++++ ++|++. ++. ++++|++|||+|.+++ ++++.+
T Consensus 225 ~v~l~~~Vt~v~~-------------------------~~v~~~--------~g~~~I~~~tvvWaaGv~a~-~~~~~l- 269 (405)
T COG1252 225 EVLLGTPVTEVTP-------------------------DGVTLK--------DGEEEIPADTVVWAAGVRAS-PLLKDL- 269 (405)
T ss_pred EEEcCCceEEECC-------------------------CcEEEc--------cCCeeEecCEEEEcCCCcCC-hhhhhc-
Confidence 9999999999998 667775 444 6999999999999999 677652
Q ss_pred CccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCceecCc
Q 009310 383 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 462 (538)
Q Consensus 383 ~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p~~~~~~ 462 (538)
.+.+.|..|++.||++||++++|+||++|||+...++ ++.|++++.|++||+++|+||.+.++|++++||+|.++
T Consensus 270 ---~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~--~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~ 344 (405)
T COG1252 270 ---SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP--RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDK 344 (405)
T ss_pred ---ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC--CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccce
Confidence 2467788999999999999999999999999998776 78999999999999999999999999999999999999
Q ss_pred ccEEEecCCCeeecCCccCCeEEecHHHHHHHHhhhhhcCCCcchhHHHHHhhhhhHh
Q 009310 463 GEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSA 520 (538)
Q Consensus 463 g~~~~lG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 520 (538)
|+++++|.+.+++. .+++.+.|+++|++|+.+|++++..+.+++++.++|+....
T Consensus 345 Gtl~~lG~~~av~~---~g~~~l~G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~ 399 (405)
T COG1252 345 GTLASLGDFSAVAD---LGGVKLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYL 399 (405)
T ss_pred EEEEEccCCceeEE---ecceeeccHHHHHHHHHHHHheecccCcHHHHHHHHhhhhh
Confidence 99999999999998 45699999999999999999999999999999999997764
No 2
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=2.4e-56 Score=466.95 Aligned_cols=379 Identities=26% Similarity=0.421 Sum_probs=329.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
..+++|||||||+||+.+|..|.+ .+++|||||+++++.|.|++++++.|..+.+++..+++..+...+++|+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 81 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR 81 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE
Confidence 455899999999999999999965 57899999999999999999999999988888888898888888999999
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEc----------CCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLL----------ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~----------~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~ 226 (538)
++|++||++.+. +.+ +++.++.||+||||||+.+..+++||..++.+.+++.+++..
T Consensus 82 ~~V~~Id~~~~~-------------v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~ 148 (424)
T PTZ00318 82 AVVYDVDFEEKR-------------VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARG 148 (424)
T ss_pred EEEEEEEcCCCE-------------EEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHH
Confidence 999999988763 444 456689999999999999999999999888889999999999
Q ss_pred HHHHHHHH-HHhccC------CCCCCeEEEECCChhHHHHHHHHHHHHHh-----------cCcEEEEecCCccCCCCCh
Q 009310 227 VDRKLSEL-ERRNFG------KDSLIRVAVVGCGYSGVELAATVSERLEE-----------KGIVQAINVETTICPTGTP 288 (538)
Q Consensus 227 ~~~~l~~~-~~~~~~------~~~~~~VvVVGgG~~g~E~A~~l~~~~~~-----------~~~Vtlv~~~~~~l~~~~~ 288 (538)
+++.+... +..... ....++|+|||||++|+|+|.+|+++.++ ...|+++++.+++++.+++
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~ 228 (424)
T PTZ00318 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQ 228 (424)
T ss_pred HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCH
Confidence 88876542 221100 01135899999999999999999886532 2349999999999999999
Q ss_pred hhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEe
Q 009310 289 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368 (538)
Q Consensus 289 ~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a 368 (538)
.+.+.+++.|+++||++++++.|.++.+ +.++++ +|+++++|++||+
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~-------------------------~~v~~~--------~g~~i~~d~vi~~ 275 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD-------------------------KEVVLK--------DGEVIPTGLVVWS 275 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC-------------------------CEEEEC--------CCCEEEccEEEEc
Confidence 9999999999999999999999999976 455554 6789999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 009310 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (538)
Q Consensus 369 ~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~ 448 (538)
+|.+|+ +++..+ +++++++|+|.||+++|++++|||||+|||+...+ .+.|++++.|++||+++|+||.+.
T Consensus 276 ~G~~~~-~~~~~~-----~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~---~~~~~~~~~A~~qg~~~A~ni~~~ 346 (424)
T PTZ00318 276 TGVGPG-PLTKQL-----KVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYLAKEFNNE 346 (424)
T ss_pred cCCCCc-chhhhc-----CCcccCCCcEEeCCCcccCCCCCEEEEeccccCCC---CCCCCchHHHHHHHHHHHHHHHHH
Confidence 999998 666543 46778889999999999779999999999998632 346889999999999999999999
Q ss_pred HCCCC-CCCceecCcccEEEecCCCeeecCCccCCeEEecHHHHHHHHhhhhhcCCCcchhHHHHHhhhhhH
Q 009310 449 INDRP-LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKS 519 (538)
Q Consensus 449 l~~~~-~~p~~~~~~g~~~~lG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 519 (538)
+.+++ ++||.|...|.++++|+++|+++ ++++.+.|+++|++|+.+|+..++++.++++++++|+.+.
T Consensus 347 l~g~~~~~~~~~~~~g~~~~lG~~~av~~---~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 415 (424)
T PTZ00318 347 LKGKPMSKPFVYRSLGSLAYLGNYSAIVQ---LGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTA 415 (424)
T ss_pred hcCCCCCCCCeecCCceEEEecCCceEEE---cCCceEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99886 89999999999999999999998 5679999999999999999999999999999999999653
No 3
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=2.2e-51 Score=399.75 Aligned_cols=390 Identities=26% Similarity=0.391 Sum_probs=327.3
Q ss_pred CCCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccC--C
Q 009310 74 WPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT--G 151 (538)
Q Consensus 74 ~~~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~--~ 151 (538)
.....+++|||+|.|.+|.+.+..|-. ..++|++|+++++|.|.|+++....|.++..++.+|.+.+.+.. +
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldt------s~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~ 123 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDT------SLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGE 123 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhccc------cccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCC
Confidence 345677999999999999999999976 56799999999999999999999999999999999999888765 6
Q ss_pred cEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc----eEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHH
Q 009310 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG----LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227 (538)
Q Consensus 152 v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g----~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~ 227 (538)
+.|++++.+.+|++.+. +.. ...++++ ..+.|||||+|+|+.++.+++||+.++.+.++..+|+.++
T Consensus 124 ~~y~eAec~~iDp~~k~------V~~---~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeI 194 (491)
T KOG2495|consen 124 VKYLEAECTKIDPDNKK------VHC---RSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEI 194 (491)
T ss_pred ceEEecccEeecccccE------EEE---eeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHH
Confidence 88999999999998773 111 1122333 4799999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHhcc------CCCCCCeEEEECCChhHHHHHHHHHHHHHh-----------cCcEEEEecCCccCCCCChh
Q 009310 228 DRK-LSELERRNF------GKDSLIRVAVVGCGYSGVELAATVSERLEE-----------KGIVQAINVETTICPTGTPG 289 (538)
Q Consensus 228 ~~~-l~~~~~~~~------~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~-----------~~~Vtlv~~~~~~l~~~~~~ 289 (538)
+.. +..++.+.. ++.+..+++|||||++|+|+|.||+++..+ .-.||+++..+.+|++++..
T Consensus 195 R~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkr 274 (491)
T KOG2495|consen 195 RRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKR 274 (491)
T ss_pred HHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHH
Confidence 876 455665543 244567999999999999999999887653 11399999999999999999
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEec
Q 009310 290 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369 (538)
Q Consensus 290 ~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~ 369 (538)
+.+++++.+.+.||.+.+++.|..+.+ +.+.+... +++-+++|+-+++|++
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V~~-------------------------~~I~~~~~----~g~~~~iPYG~lVWat 325 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKVTE-------------------------KTIHAKTK----DGEIEEIPYGLLVWAT 325 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEeecC-------------------------cEEEEEcC----CCceeeecceEEEecC
Confidence 999999999999999999999999988 45555532 2344789999999999
Q ss_pred CCCCCCCCCCCCCCccCCCCcCCCC--CeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 370 GSKPLLPHVEPPNNRLHDLPLNARG--QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 370 G~~p~~~~l~~~~~~~~~~~l~~~G--~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
|..|. ++...+ -..+++.| ++.||++||+++.+||||+|||+..+ ..+++++.|.+||.++|+++..
T Consensus 326 G~~~r-p~~k~l-----m~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~-----~~~~tAQVA~QqG~yLAk~fn~ 394 (491)
T KOG2495|consen 326 GNGPR-PVIKDL-----MKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQR-----GLKPTAQVAEQQGAYLAKNFNK 394 (491)
T ss_pred CCCCc-hhhhhH-----hhcCCccCceeeeeeceeeccCcCceEEeccccccc-----cCccHHHHHHHHHHHHHHHHHH
Confidence 99987 554432 23455666 89999999999999999999999432 3467999999999999999876
Q ss_pred HHCCC----------------CCCCceecCcccEEEecCCCeeecCCccCCeEEecHHHHHHHHhhhhhcCCCcchhHHH
Q 009310 448 AINDR----------------PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 511 (538)
Q Consensus 448 ~l~~~----------------~~~p~~~~~~g~~~~lG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 511 (538)
..+.. .++||+|.++|.+++||+..++++++.-..+...|..+|++|+++|+..+-+|++|+.+
T Consensus 395 m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~~g~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV 474 (491)
T KOG2495|consen 395 MGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLPVGKMWVSAGGSSFWLWRSAYLSKLVSWRNRFLV 474 (491)
T ss_pred HhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCccCCeeeeccchhhHHHHHHHHHHhhhhhhheee
Confidence 54321 13899999999999999999999875323388999999999999999999999999999
Q ss_pred HHhhhhh
Q 009310 512 GVSWLTK 518 (538)
Q Consensus 512 ~~~w~~~ 518 (538)
++||+..
T Consensus 475 ~~dW~~~ 481 (491)
T KOG2495|consen 475 AIDWEKT 481 (491)
T ss_pred eeheeee
Confidence 9999843
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.8e-48 Score=399.64 Aligned_cols=354 Identities=27% Similarity=0.375 Sum_probs=297.7
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEeeEE
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVK 160 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 160 (538)
+|||||||+||+.+|.+|++.. .++++|+|||+++++.|.+.++.++.|....+++..++++++++.+++|+.++|+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~ 77 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEAT 77 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEE
Confidence 5999999999999999997632 2678999999999999999988888888788888888888888889999999999
Q ss_pred EEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccC
Q 009310 161 LLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG 240 (538)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~ 240 (538)
.+|++.+ .|.+++++++.||+||||||+.+..|.+||..++.+.+++.+++....+.+......
T Consensus 78 ~id~~~~-------------~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 141 (364)
T TIGR03169 78 GIDPDRR-------------KVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADA--- 141 (364)
T ss_pred EEecccC-------------EEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhc---
Confidence 9998776 588888888999999999999999999999888888888988888765544321110
Q ss_pred CCCCCeEEEECCChhHHHHHHHHHHHHHhcC---cEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEecc
Q 009310 241 KDSLIRVAVVGCGYSGVELAATVSERLEEKG---IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317 (538)
Q Consensus 241 ~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~---~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~ 317 (538)
....++|+|||||++|+|+|.+|.+.+++.+ .|+++ ..+.+++.+++...+.+.+.|+++||++++++.+++++.
T Consensus 142 ~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~- 219 (364)
T TIGR03169 142 PPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD- 219 (364)
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC-
Confidence 0124699999999999999999988765432 49999 557778888888999999999999999999999999865
Q ss_pred ccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCee
Q 009310 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~ 397 (538)
+.+.+. +++++++|.+|+|+|.+|+ +++... ++.++++|++.
T Consensus 220 ------------------------~~v~~~--------~g~~i~~D~vi~a~G~~p~-~~l~~~-----gl~~~~~g~i~ 261 (364)
T TIGR03169 220 ------------------------GALILA--------DGRTLPADAILWATGARAP-PWLAES-----GLPLDEDGFLR 261 (364)
T ss_pred ------------------------CeEEeC--------CCCEEecCEEEEccCCChh-hHHHHc-----CCCcCCCCeEE
Confidence 444443 6778999999999999998 444432 46778889999
Q ss_pred eCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCceec-CcccEEEecCCCeeec
Q 009310 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ-NLGEMMILGRNDAAVS 476 (538)
Q Consensus 398 vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p~~~~-~~g~~~~lG~~~~~~~ 476 (538)
||+++|++++|+|||+|||+..++ .+.++.+..|++||+.+|+||.+.+.++++++|++. ..++++++|++.|++.
T Consensus 262 vd~~l~~~~~~~Iya~GD~~~~~~---~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~~~~~~~~~~~~~G~~~~v~~ 338 (364)
T TIGR03169 262 VDPTLQSLSHPHVFAAGDCAVITD---APRPKAGVYAVRQAPILAANLRASLRGQPLRPFRPQRDYLQLLNTGDRRAVAS 338 (364)
T ss_pred ECCccccCCCCCEEEeeeeeecCC---CCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCCcccccceeEEEcCCCcEEEe
Confidence 999999888999999999998643 245778899999999999999999999999999864 5689999999999886
Q ss_pred CCccCCeEEecHHHHHHHHhhhh
Q 009310 477 PSFVEGVTLDGPIGHSARKLAYL 499 (538)
Q Consensus 477 ~~~~~~~~~~g~~~~~~~~~~~~ 499 (538)
++++.+.|+++|++|.....
T Consensus 339 ---~~~~~~~~~~~~~~k~~~~~ 358 (364)
T TIGR03169 339 ---WGWIIGPGRWLWRLKDWIDR 358 (364)
T ss_pred ---ecceeecCccHHHHHHHHhH
Confidence 45799999999999876543
No 5
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=346.23 Aligned_cols=324 Identities=22% Similarity=0.266 Sum_probs=252.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC-cch-hhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-PML-YELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-p~~-~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
.++|||||||+||++||..|++.+ ...+|+||+++++++|. |.+ ..++.+......... ..+++...+++++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~----~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQG----FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVL-PANWWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhC----CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccC-CHHHHHHCCCEEEc
Confidence 368999999999999999999853 45589999999887773 444 444444332111112 23455667899998
Q ss_pred e-eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCc-cccCcCCCChHHHHHHHHHHHHH
Q 009310 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA-AEFAFPFSTLEDACRVDRKLSEL 234 (538)
Q Consensus 157 ~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~-~~~~~~~~~~~d~~~~~~~l~~~ 234 (538)
+ .|+.++.+.+ .+.+++|..+.||+||||||+.|+.+++++. .++++.+++.+|+..+++.+..
T Consensus 78 g~~V~~id~~~~-------------~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~- 143 (396)
T PRK09754 78 GVTIKTLGRDTR-------------ELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQP- 143 (396)
T ss_pred CCEEEEEECCCC-------------EEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhc-
Confidence 7 7899988765 4777788899999999999999987776654 3566778888998888776532
Q ss_pred HHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-CChhhHHHHHHHHHhCCCEEEcCceeeE
Q 009310 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRC 313 (538)
Q Consensus 235 ~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~V~~ 313 (538)
+++|+|||+|.+|+|+|..|.+.+.+ |+++++.+.+++. .++...+.+.+.++++||++++++.|++
T Consensus 144 ---------~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 144 ---------ERSVVIVGAGTIGLELAASATQRRCK---VTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred ---------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 67999999999999999999887665 9999999988875 5778888899999999999999999999
Q ss_pred EeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCC
Q 009310 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393 (538)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~ 393 (538)
+..+ +.+.+.+. +|+.+++|.||+++|.+||+.++... ++.. +
T Consensus 212 i~~~------------------------~~~~v~l~------~g~~i~aD~Vv~a~G~~pn~~l~~~~-----gl~~--~ 254 (396)
T PRK09754 212 VVDG------------------------EKVELTLQ------SGETLQADVVIYGIGISANDQLAREA-----NLDT--A 254 (396)
T ss_pred EEcC------------------------CEEEEEEC------CCCEEECCEEEECCCCChhhHHHHhc-----CCCc--C
Confidence 9762 23444432 67789999999999999998776543 3443 4
Q ss_pred CCeeeCCCcccCCCCCEEEccccccccCCCCCC-CCccHHHHHHHHHHHHHHHHHHHCCCCCCCceecCc-c-cEEEecC
Q 009310 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL-G-EMMILGR 470 (538)
Q Consensus 394 G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~-~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p~~~~~~-g-~~~~lG~ 470 (538)
+.|.||+++|+ +.|+|||+|||+..+++.|+. .+.++..|.+||+.+|+||.+.....+..||.|+++ + .+.++|.
T Consensus 255 ~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~ 333 (396)
T PRK09754 255 NGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGD 333 (396)
T ss_pred CCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeC
Confidence 56999999999 899999999999876554432 356889999999999999987655566678888775 4 4556774
Q ss_pred C
Q 009310 471 N 471 (538)
Q Consensus 471 ~ 471 (538)
.
T Consensus 334 ~ 334 (396)
T PRK09754 334 M 334 (396)
T ss_pred C
Confidence 3
No 6
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=2.5e-39 Score=339.92 Aligned_cols=299 Identities=19% Similarity=0.270 Sum_probs=237.9
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc-chhhhhcCCCCCcc-c-cccHHHHhccCCcEEEE
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWE-I-APRFADLLANTGVQFFK 156 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p-~~~~~~~g~~~~~~-~-~~~~~~~~~~~~v~~~~ 156 (538)
++|||||||+||++||..|+++ .++++|+|||+++++.|.+ .++.++.+.....+ . ......+.++.+++++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 77 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKT 77 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEe
Confidence 5899999999999999999884 2689999999999988875 56666655543322 2 22234455667899876
Q ss_pred -eeEEEEcCCCCcCcCCCceeecccEEEcCCc-----eEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHH
Q 009310 157 -DRVKLLCPSDHLGVNGPMACTHGGTVLLESG-----LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230 (538)
Q Consensus 157 -~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~ 230 (538)
++|++||++.+ .|.+.++ ..+.||+||||||+.|+.|++++ ++.+.+++..++..+++.
T Consensus 78 ~~~V~~Id~~~~-------------~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 142 (438)
T PRK13512 78 YHEVIAINDERQ-------------TVTVLNRKTNEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQF 142 (438)
T ss_pred CCEEEEEECCCC-------------EEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHH
Confidence 69999998876 3444322 24799999999999998877654 455667778888777766
Q ss_pred HHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCce
Q 009310 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310 (538)
Q Consensus 231 l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~ 310 (538)
+... .+++|+|||||++|+|+|..+++.+.+ |+++++.+++++.+++++.+.+.+.|+++||+++++..
T Consensus 143 l~~~--------~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~ 211 (438)
T PRK13512 143 IKAN--------QVDKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEE 211 (438)
T ss_pred Hhhc--------CCCEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCe
Confidence 5331 157999999999999999999887766 99999999999989999999999999999999999999
Q ss_pred eeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCc
Q 009310 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390 (538)
Q Consensus 311 V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l 390 (538)
|++++. ..++++ +++.+++|.|++|+|.+||+++++.. ++++
T Consensus 212 v~~i~~-------------------------~~v~~~--------~g~~~~~D~vl~a~G~~pn~~~l~~~-----gl~~ 253 (438)
T PRK13512 212 IDAING-------------------------NEVTFK--------SGKVEHYDMIIEGVGTHPNSKFIESS-----NIKL 253 (438)
T ss_pred EEEEeC-------------------------CEEEEC--------CCCEEEeCEEEECcCCCcChHHHHhc-----Cccc
Confidence 999975 344443 56689999999999999998887543 5778
Q ss_pred CCCCCeeeCCCcccCCCCCEEEccccccccCC-CCC-CCCccHHHHHHHHHHHHHHHHH
Q 009310 391 NARGQAETDETLCVKGHPRIFALGDSSALRDS-SGR-PLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 391 ~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~-~~~-~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
+++|+|.||+++|+ ++|+|||+|||+...+. .+. ..++.++.|.+||+.+|+||.+
T Consensus 254 ~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 254 DDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred CCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcC
Confidence 88899999999998 89999999999975332 122 2356788899999999999974
No 7
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.2e-38 Score=352.15 Aligned_cols=303 Identities=18% Similarity=0.245 Sum_probs=249.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc-chhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p-~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
+++|||||+|+||+.+|..|++... ..+++||||++++++.|.+ .++.++.+. ..+++.....++++..+++++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~~~~~gI~~~~g 79 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHGIKVLVG 79 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHHHHhCCCEEEcC
Confidence 4589999999999999999987431 2578999999999988765 466666553 44556666677778889999987
Q ss_pred -eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccc-cCcCCCChHHHHHHHHHHHHHH
Q 009310 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAE-FAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~-~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
.|+.++++.+ .|.+.+|..+.||+||||||+.|+.|++||.+. +++.+++.+++..+++.+..
T Consensus 80 ~~V~~Id~~~~-------------~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~-- 144 (847)
T PRK14989 80 ERAITINRQEK-------------VIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARR-- 144 (847)
T ss_pred CEEEEEeCCCc-------------EEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhc--
Confidence 6999988765 477788888999999999999999999999854 45677899999888766432
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC-CCChhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
+++++|||||.+|+|+|..|.+.+.+ |+++++.+.+++ .+++...+.+.+.|+++||+++++..+++|
T Consensus 145 --------~k~vvVIGgG~iGlE~A~~L~~~G~~---VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I 213 (847)
T PRK14989 145 --------SKRGAVVGGGLLGLEAAGALKNLGVE---THVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEI 213 (847)
T ss_pred --------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEE
Confidence 67999999999999999999988766 999999999887 578999999999999999999999999999
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G 394 (538)
..++.. ....+.+. +|+++++|+||+++|.+||++++... +++++++|
T Consensus 214 ~~~~~~---------------------~~~~v~~~------dG~~i~~D~Vv~A~G~rPn~~L~~~~-----Gl~~~~~G 261 (847)
T PRK14989 214 VQEGVE---------------------ARKTMRFA------DGSELEVDFIVFSTGIRPQDKLATQC-----GLAVAPRG 261 (847)
T ss_pred EecCCC---------------------ceEEEEEC------CCCEEEcCEEEECCCcccCchHHhhc-----CccCCCCC
Confidence 764210 11222222 77899999999999999998876543 57888999
Q ss_pred CeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 395 ~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
+|.||+++|+ +.|+|||+|||+...+ .....+..|..||+.+|.||.+
T Consensus 262 ~I~VD~~l~T-s~p~IYAiGD~a~~~~----~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 262 GIVINDSCQT-SDPDIYAIGECASWNN----RVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred cEEECCCCcC-CCCCEEEeecceeEcC----cccccHHHHHHHHHHHHHHhcC
Confidence 9999999999 8999999999998632 2234778899999999999974
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=336.16 Aligned_cols=304 Identities=21% Similarity=0.315 Sum_probs=238.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc-hhhhhcCCCC-CccccccHHHHhccCCcEEEE-
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM-LYELLSGEVD-AWEIAPRFADLLANTGVQFFK- 156 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~-~~~~~~g~~~-~~~~~~~~~~~~~~~~v~~~~- 156 (538)
++|||||||+||+++|..|++++ .+++|+|||+++++.|.+. ++.+..+... ..++.....+.+.+.+++++.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~----~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 76 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLN----KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTE 76 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHC----CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEec
Confidence 37999999999999999999853 5679999999999887653 4444444322 233344445556677999875
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcC---CceEEE--eeEEEEeCCCCCCCCCCCCcc-ccCcCCCChHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVE--YDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRK 230 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~~--yD~lVlAtG~~~~~p~ipG~~-~~~~~~~~~~d~~~~~~~ 230 (538)
.+|+.++++.+ .+.+. ++..+. ||+||||||++|..|++||.. ++.+.+.+.+++.++++.
T Consensus 77 ~~V~~id~~~~-------------~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~ 143 (444)
T PRK09564 77 HEVVKVDAKNK-------------TITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKEL 143 (444)
T ss_pred CEEEEEECCCC-------------EEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHH
Confidence 58999988765 24433 244566 999999999999999999984 556667788888877776
Q ss_pred HHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC-CCChhhHHHHHHHHHhCCCEEEcCc
Q 009310 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 231 l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
+... .+++|+|||+|++|+|+|..+.+.+.+ |+++++.+++++ .+++++.+.+.+.+++.||++++++
T Consensus 144 l~~~--------~~~~vvVvGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~ 212 (444)
T PRK09564 144 LKDE--------EIKNIVIIGAGFIGLEAVEAAKHLGKN---VRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNE 212 (444)
T ss_pred Hhhc--------CCCEEEEECCCHHHHHHHHHHHhcCCc---EEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCC
Confidence 5421 157999999999999999999877655 999999888887 5788999999999999999999999
Q ss_pred eeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCC
Q 009310 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389 (538)
Q Consensus 310 ~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~ 389 (538)
.|.+++.++ ....+.. ++.++++|.+|+|+|.+|+.++++.. +++
T Consensus 213 ~v~~i~~~~-----------------------~~~~v~~-------~~~~i~~d~vi~a~G~~p~~~~l~~~-----gl~ 257 (444)
T PRK09564 213 FVKSLIGED-----------------------KVEGVVT-------DKGEYEADVVIVATGVKPNTEFLEDT-----GLK 257 (444)
T ss_pred EEEEEecCC-----------------------cEEEEEe-------CCCEEEcCEEEECcCCCcCHHHHHhc-----Ccc
Confidence 999997532 2122221 34469999999999999998887643 577
Q ss_pred cCCCCCeeeCCCcccCCCCCEEEccccccccCC-CCC-CCCccHHHHHHHHHHHHHHHHH
Q 009310 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGR-PLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 390 l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~-~~~-~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
++++|+|.||+++|+ +.|||||+|||+..++. .++ ..+++++.|.+||+++|+||..
T Consensus 258 ~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 258 TLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred ccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 778899999999998 89999999999987543 222 3467899999999999999985
No 9
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=3e-38 Score=326.23 Aligned_cols=297 Identities=22% Similarity=0.279 Sum_probs=238.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc-CcchhhhhcCCCCCccccc-cHHHHhccCCcEEEE
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPMLYELLSGEVDAWEIAP-RFADLLANTGVQFFK 156 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~-~p~~~~~~~g~~~~~~~~~-~~~~~~~~~~v~~~~ 156 (538)
+++|||||||+||+++|..|+++ +++.+||||++++++.| .|.++..+.+....+++.. ...+++++.+++++.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 77 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFP 77 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEEC
Confidence 46999999999999999999884 36789999999987655 6777777766655555554 456677788999986
Q ss_pred -eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 -DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 -~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
.+|++++++.+ .+.+ ++..+.||+||||||+.|..|++||.+. .+.+.+..++..++..+..
T Consensus 78 ~~~V~~id~~~~-------------~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~~~-- 140 (377)
T PRK04965 78 HTWVTDIDAEAQ-------------VVKS-QGNQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQLRD-- 140 (377)
T ss_pred CCEEEEEECCCC-------------EEEE-CCeEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHhhc--
Confidence 58999988765 3555 4558999999999999999999999754 5667777777766655432
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-CChhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
+++|+|||+|++|+|+|..|.+.+.+ |+++++.+.+++. +++.....+.+.|++.||++++++.+.++
T Consensus 141 --------~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i 209 (377)
T PRK04965 141 --------AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGL 209 (377)
T ss_pred --------CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEE
Confidence 57999999999999999999877655 9999999988876 47788889999999999999999999999
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G 394 (538)
..++ +.+.+.+. +++++++|.||+|+|.+|+.+++... +++.+ +|
T Consensus 210 ~~~~-----------------------~~~~v~~~------~g~~i~~D~vI~a~G~~p~~~l~~~~-----gl~~~-~g 254 (377)
T PRK04965 210 EKTD-----------------------SGIRATLD------SGRSIEVDAVIAAAGLRPNTALARRA-----GLAVN-RG 254 (377)
T ss_pred EccC-----------------------CEEEEEEc------CCcEEECCEEEECcCCCcchHHHHHC-----CCCcC-CC
Confidence 8743 33334432 67889999999999999998776543 45554 35
Q ss_pred CeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 009310 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (538)
Q Consensus 395 ~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~ 448 (538)
+.||+++|+ +.|+|||+|||+...+ .. .+.++.|.+||+.+|+||.+.
T Consensus 255 -i~vd~~l~t-s~~~VyA~GD~a~~~~---~~-~~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 255 -IVVDSYLQT-SAPDIYALGDCAEING---QV-LPFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred -EEECCCccc-CCCCEEEeeecEeECC---ce-eehHHHHHHHHHHHHHHhcCC
Confidence 999999999 8999999999998632 22 245677999999999999853
No 10
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.7e-37 Score=327.01 Aligned_cols=287 Identities=21% Similarity=0.289 Sum_probs=220.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc----------hhh-----hh---c--CC-----
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------LYE-----LL---S--GE----- 133 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~----------~~~-----~~---~--g~----- 133 (538)
++||+||||||||++||..+++ .|++|+|||++ .++.... +.. .+ . |.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 74 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN------HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKA 74 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh------CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCC
Confidence 4899999999999999999999 78899999985 3322211 000 00 0 00
Q ss_pred -CCC-----------ccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC
Q 009310 134 -VDA-----------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (538)
Q Consensus 134 -~~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~ 201 (538)
.+. ..+...++..++..+++++.+++..++++.. .+. .++..+.||+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v-------------~v~-~~g~~~~~d~lIiATGs 140 (446)
T TIGR01424 75 RFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTV-------------EVL-QDGTTYTAKKILIAVGG 140 (446)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEE-------------EEe-cCCeEEEcCEEEEecCC
Confidence 000 0112234455667799999999988876432 233 35668999999999999
Q ss_pred CCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 202 ~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.|..|++||.+. . .+.+++..+... +++++|||+|++|+|+|..+++.+.+ |+++++.+.
T Consensus 141 ~p~~p~i~G~~~-~---~~~~~~~~l~~~-------------~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~ 200 (446)
T TIGR01424 141 RPQKPNLPGHEL-G---ITSNEAFHLPTL-------------PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGEL 200 (446)
T ss_pred cCCCCCCCCccc-e---echHHhhccccc-------------CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCC
Confidence 999999998632 1 233344332211 67999999999999999999887665 999999999
Q ss_pred cCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEe
Q 009310 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (538)
Q Consensus 282 ~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~ 361 (538)
+++.+++++.+.+.+.|++.||++++++.|.+++.++ +++.+.+. ++++++
T Consensus 201 ~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~~i~ 251 (446)
T TIGR01424 201 ILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTD-----------------------DGLKVTLS------HGEEIV 251 (446)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-----------------------CeEEEEEc------CCcEee
Confidence 9999999999999999999999999999999997643 33444432 567899
Q ss_pred ccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHH
Q 009310 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (538)
Q Consensus 362 ~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~a 441 (538)
+|.||+|+|.+|+++.+... ..+++++++|+|.||+++|| +.|+|||+|||+.. +..+..|.+||+.+
T Consensus 252 ~D~viva~G~~pn~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A~~~g~~~ 319 (446)
T TIGR01424 252 ADVVLFATGRSPNTKGLGLE---AAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDR--------INLTPVAIMEATCF 319 (446)
T ss_pred cCEEEEeeCCCcCCCcCCcc---ccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCC--------ccchhHHHHHHHHH
Confidence 99999999999998764221 33677888999999999999 99999999999975 57889999999999
Q ss_pred HHHHHH
Q 009310 442 GWNLWA 447 (538)
Q Consensus 442 a~~i~~ 447 (538)
|.||..
T Consensus 320 a~~i~~ 325 (446)
T TIGR01424 320 ANTEFG 325 (446)
T ss_pred HHHHhc
Confidence 999974
No 11
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.7e-37 Score=345.60 Aligned_cols=296 Identities=18% Similarity=0.282 Sum_probs=246.9
Q ss_pred EEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC-cchhhhhcCCCCCccccccHHHHhccCCcEEEEe-eE
Q 009310 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-PMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-RV 159 (538)
Q Consensus 82 VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~v 159 (538)
|||||||+||+++|..|+++. ..+++|||||+++++.|. +.++.++.|....+++..+..+++++.+++++.+ +|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V 77 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETV 77 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeE
Confidence 699999999999999998853 257899999999998775 4577788887777777777888888889999986 89
Q ss_pred EEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCcc-ccCcCCCChHHHHHHHHHHHHHHHhc
Q 009310 160 KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRN 238 (538)
Q Consensus 160 ~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~-~~~~~~~~~~d~~~~~~~l~~~~~~~ 238 (538)
+.++++.+ .|.+.+|..+.||+||||||+.|+.|++||.+ ++++.+++.+|+..+++.+..
T Consensus 78 ~~Id~~~k-------------~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~----- 139 (785)
T TIGR02374 78 IQIDTDQK-------------QVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQR----- 139 (785)
T ss_pred EEEECCCC-------------EEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhc-----
Confidence 99998765 57888888999999999999999999999975 356778888888888775432
Q ss_pred cCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC-CCChhhHHHHHHHHHhCCCEEEcCceeeEEecc
Q 009310 239 FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317 (538)
Q Consensus 239 ~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~ 317 (538)
+++++|||||.+|+|+|..|++.+.+ |+++++.+.+++ .+++.....+.+.|+++||++++++.++++..+
T Consensus 140 -----~k~vvVVGgG~~GlE~A~~L~~~G~~---Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 140 -----FKKAAVIGGGLLGLEAAVGLQNLGMD---VSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA 211 (785)
T ss_pred -----CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC
Confidence 67999999999999999999988766 999999998876 468888899999999999999999999999764
Q ss_pred ccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCee
Q 009310 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~ 397 (538)
+.. ..+++. +|+++++|+||+++|.+|+++++... +++.+ |.|.
T Consensus 212 ~~~---------------------~~v~~~--------dG~~i~~D~Vi~a~G~~Pn~~la~~~-----gl~~~--ggI~ 255 (785)
T TIGR02374 212 TKA---------------------DRIRFK--------DGSSLEADLIVMAAGIRPNDELAVSA-----GIKVN--RGII 255 (785)
T ss_pred Cce---------------------EEEEEC--------CCCEEEcCEEEECCCCCcCcHHHHhc-----CCccC--CCEE
Confidence 311 234443 67899999999999999998876543 35554 6799
Q ss_pred eCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 398 vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
||+++|+ +.|+|||+|||+...+ .....+..|..||+++|.||.+
T Consensus 256 Vd~~~~T-s~p~IyA~GD~a~~~~----~~~gl~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 256 VNDSMQT-SDPDIYAVGECAEHNG----RVYGLVAPLYEQAKVLADHICG 300 (785)
T ss_pred ECCCccc-CCCCEEEeeecceeCC----cccccHHHHHHHHHHHHHHhcC
Confidence 9999999 9999999999998632 1234677899999999999974
No 12
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.1e-36 Score=323.63 Aligned_cols=291 Identities=19% Similarity=0.227 Sum_probs=222.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC---------CCcccC----------cchhhh-h------
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS---------ERFVFK----------PMLYEL-L------ 130 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~---------~~~~~~----------p~~~~~-~------ 130 (538)
...+||+||||||||+.||..+++ .|.+|+|||+. +.++.. .++... +
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~------~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~ 96 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN------FGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED 96 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999 67799999962 222221 111100 0
Q ss_pred ---cCC-------CCCcccc-----------ccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCce-
Q 009310 131 ---SGE-------VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL- 188 (538)
Q Consensus 131 ---~g~-------~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~- 188 (538)
.|. .+...+. ..+..++...+++++.+++..+++... .|.+.+|+
T Consensus 97 ~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v-------------~V~~~~g~~ 163 (499)
T PLN02507 97 AKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEV-------------EVTQLDGTK 163 (499)
T ss_pred HHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEE-------------EEEeCCCcE
Confidence 011 0101111 112233445789999999999987643 46666664
Q ss_pred -EEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHH
Q 009310 189 -IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERL 267 (538)
Q Consensus 189 -~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~ 267 (538)
.+.||+||||||+.|..|++||.+. ..+.+++..+... +++|+|||+|++|+|+|..+...+
T Consensus 164 ~~~~~d~LIIATGs~p~~p~ipG~~~----~~~~~~~~~l~~~-------------~k~vvVIGgG~ig~E~A~~l~~~G 226 (499)
T PLN02507 164 LRYTAKHILIATGSRAQRPNIPGKEL----AITSDEALSLEEL-------------PKRAVVLGGGYIAVEFASIWRGMG 226 (499)
T ss_pred EEEEcCEEEEecCCCCCCCCCCCccc----eechHHhhhhhhc-------------CCeEEEECCcHHHHHHHHHHHHcC
Confidence 5889999999999999999999632 1244555444322 679999999999999999998877
Q ss_pred HhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEe
Q 009310 268 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347 (538)
Q Consensus 268 ~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 347 (538)
.+ |+++++.+++++.+++++.+.+.+.|+++||++++++.|++++.++ +++.+.
T Consensus 227 ~~---Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-----------------------~~~~v~ 280 (499)
T PLN02507 227 AT---VDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE-----------------------GGIKVI 280 (499)
T ss_pred Ce---EEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-----------------------CeEEEE
Confidence 66 9999999999998999999999999999999999999999998643 344444
Q ss_pred ecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCC
Q 009310 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427 (538)
Q Consensus 348 ~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~ 427 (538)
+. +++++++|.|++++|++|+++++... ..+++++++|+|.||+++|+ +.|||||+|||+..
T Consensus 281 ~~------~g~~i~~D~vl~a~G~~pn~~~l~l~---~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~-------- 342 (499)
T PLN02507 281 TD------HGEEFVADVVLFATGRAPNTKRLNLE---AVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNR-------- 342 (499)
T ss_pred EC------CCcEEEcCEEEEeecCCCCCCCCCch---hhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCC--------
Confidence 32 56789999999999999998875321 23678888999999999998 99999999999975
Q ss_pred CccHHHHHHHHHHHHHHHHH
Q 009310 428 PATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 428 ~~~~~~A~~qg~~aa~~i~~ 447 (538)
+..++.|.+||+++|.||..
T Consensus 343 ~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 343 INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CccHHHHHHHHHHHHHHHcC
Confidence 56889999999999999974
No 13
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=5.9e-37 Score=316.21 Aligned_cols=292 Identities=25% Similarity=0.371 Sum_probs=226.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc----------Ccchhhh--h---------cCC---
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF----------KPMLYEL--L---------SGE--- 133 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~----------~p~~~~~--~---------~g~--- 133 (538)
+.+|+|||||||||..||.+++++ |.+|.|||++..++. +.+++.. . .|.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~ 76 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE 76 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC
Confidence 469999999999999999999995 446999999953222 2222110 0 010
Q ss_pred ---CCCccc-----------cccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCC--ceEEEeeEEEE
Q 009310 134 ---VDAWEI-----------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLES--GLIVEYDWLVL 197 (538)
Q Consensus 134 ---~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~--g~~~~yD~lVl 197 (538)
.+..++ ...+..+++..+++++.+...-+++. +|...+ .+.+.+|++||
T Consensus 77 ~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~---------------~v~V~~~~~~~~~a~~iiI 141 (454)
T COG1249 77 VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH---------------TVEVTGEDKETITADNIII 141 (454)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCC---------------EEEEcCCCceEEEeCEEEE
Confidence 111111 11123445566899999987777633 344443 47899999999
Q ss_pred eCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEe
Q 009310 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAIN 277 (538)
Q Consensus 198 AtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~ 277 (538)
|||++|..|++||+++.. +.+.+++..+.+. |++++|||||++|+|+|..++.++.+ ||+++
T Consensus 142 ATGS~p~~~~~~~~~~~~--~~~s~~~l~~~~l-------------P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie 203 (454)
T COG1249 142 ATGSRPRIPPGPGIDGAR--ILDSSDALFLLEL-------------PKSLVIVGGGYIGLEFASVFAALGSK---VTVVE 203 (454)
T ss_pred cCCCCCcCCCCCCCCCCe--EEechhhcccccC-------------CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEe
Confidence 999999999999875432 3344454444432 88999999999999999999999888 99999
Q ss_pred cCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcc
Q 009310 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357 (538)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g 357 (538)
+.++++|.+++++++.+.+.|++.|+++++++.+++++..+ +++.+.++ .+ ++
T Consensus 204 ~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~-----------------------~~v~v~~~---~g-~~ 256 (454)
T COG1249 204 RGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKD-----------------------DGVLVTLE---DG-EG 256 (454)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecC-----------------------CeEEEEEe---cC-CC
Confidence 99999999999999999999999999999999999998865 33555543 11 22
Q ss_pred eEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHH
Q 009310 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437 (538)
Q Consensus 358 ~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~q 437 (538)
..+++|.|++|+|.+||++-+.. ...|++++++|+|.||+.+++ +.|+|||+|||+.. +.+++.|.+|
T Consensus 257 ~~~~ad~vLvAiGR~Pn~~~LgL---e~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~--------~~Lah~A~~e 324 (454)
T COG1249 257 GTIEADAVLVAIGRKPNTDGLGL---ENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG--------PMLAHVAMAE 324 (454)
T ss_pred CEEEeeEEEEccCCccCCCCCCh---hhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCC--------cccHhHHHHH
Confidence 27999999999999999875432 245899999999999966666 89999999999886 6699999999
Q ss_pred HHHHHHHHHH
Q 009310 438 ADFAGWNLWA 447 (538)
Q Consensus 438 g~~aa~~i~~ 447 (538)
|+++|.||..
T Consensus 325 g~iaa~~i~g 334 (454)
T COG1249 325 GRIAAENIAG 334 (454)
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 14
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.7e-36 Score=319.16 Aligned_cols=286 Identities=21% Similarity=0.279 Sum_probs=215.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc----------chhhh-----h-----cCC-----
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----------MLYEL-----L-----SGE----- 133 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p----------~~~~~-----~-----~g~----- 133 (538)
.+||+||||||||++||..|++ .|++|+|||++. ++... ++... . .|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 74 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE------HGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLE 74 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH------CCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCc
Confidence 4899999999999999999999 688999999964 22211 11000 0 000
Q ss_pred --CCCcc-----------ccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCC
Q 009310 134 --VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200 (538)
Q Consensus 134 --~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG 200 (538)
.+... +...+...++..+++++.++....+ .+ ++.. ++..+.||+||||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~-------------~v~v-~~~~~~~d~vIiAtG 138 (450)
T TIGR01421 75 NTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DG-------------TVEV-NGRDYTAPHILIATG 138 (450)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-------------EEEE-CCEEEEeCEEEEecC
Confidence 11111 1111334455678999988765432 11 3444 345799999999999
Q ss_pred CCCCCC-CCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 201 AEPKLD-VVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 201 ~~~~~p-~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
+.|+.| ++||.+ .. .+.++...+... +++|+|||||++|+|+|..+++.+.+ |+++++.
T Consensus 139 s~p~~p~~i~g~~-~~---~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~ 198 (450)
T TIGR01421 139 GKPSFPENIPGAE-LG---TDSDGFFALEEL-------------PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRH 198 (450)
T ss_pred CCCCCCCCCCCCc-ee---EcHHHhhCcccc-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecC
Confidence 999998 899863 11 233333322211 67999999999999999999988776 9999999
Q ss_pred CccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcc-e
Q 009310 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-Q 358 (538)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g-~ 358 (538)
+++++.+++.+.+.+.+.|+++||++++++.|++++.+.. +.+.+.+. ++ +
T Consensus 199 ~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~----------------------~~~~v~~~------~g~~ 250 (450)
T TIGR01421 199 ERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVE----------------------GKLVIHFE------DGKS 250 (450)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC----------------------ceEEEEEC------CCcE
Confidence 9999999999999999999999999999999999986431 22344432 34 6
Q ss_pred EEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
.+++|.||+++|++||++++... ..+++++++|+|.||+++|| +.|+|||+|||+.. +..+..|.+||
T Consensus 251 ~i~~D~vi~a~G~~pn~~~l~l~---~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~--------~~~~~~A~~~g 318 (450)
T TIGR01421 251 IDDVDELIWAIGRKPNTKGLGLE---NVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGK--------VELTPVAIAAG 318 (450)
T ss_pred EEEcCEEEEeeCCCcCcccCCcc---ccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCC--------cccHHHHHHHH
Confidence 79999999999999998865321 23678899999999999998 89999999999975 56888999999
Q ss_pred HHHHHHHHH
Q 009310 439 DFAGWNLWA 447 (538)
Q Consensus 439 ~~aa~~i~~ 447 (538)
+.+|+||..
T Consensus 319 ~~aa~~i~~ 327 (450)
T TIGR01421 319 RKLSERLFN 327 (450)
T ss_pred HHHHHHHhc
Confidence 999999974
No 15
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=8.4e-37 Score=322.67 Aligned_cols=286 Identities=22% Similarity=0.318 Sum_probs=217.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc----------chh-----hh----h--cCC----
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----------MLY-----EL----L--SGE---- 133 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p----------~~~-----~~----~--~g~---- 133 (538)
.+||+||||||||++||..|++ .|++|+|||++. ++... +++ .. . .|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~------~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~ 76 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAM------YGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTE 76 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCC
Confidence 4899999999999999999999 688999999863 22211 010 00 0 010
Q ss_pred --CCCcc-----------ccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCC
Q 009310 134 --VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200 (538)
Q Consensus 134 --~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG 200 (538)
.+... +...+...+...+++++.++++.++.. ++.+ ++..+.||+||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~---------------~v~~-~g~~~~~d~lViATG 140 (450)
T PRK06116 77 NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAH---------------TVEV-NGERYTADHILIATG 140 (450)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC---------------EEEE-CCEEEEeCEEEEecC
Confidence 01111 111223345567899999988877532 3555 566899999999999
Q ss_pred CCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 201 ~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
+.|+.|++||.+. +.+.++...+.. .+++|+|||+|++|+|+|..+.+.+.+ |+++++.+
T Consensus 141 s~p~~p~i~g~~~----~~~~~~~~~~~~-------------~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~ 200 (450)
T PRK06116 141 GRPSIPDIPGAEY----GITSDGFFALEE-------------LPKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGD 200 (450)
T ss_pred CCCCCCCCCCcce----eEchhHhhCccc-------------cCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCC
Confidence 9999999998632 122233322211 167999999999999999999887666 99999999
Q ss_pred ccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEE
Q 009310 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (538)
Q Consensus 281 ~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l 360 (538)
.+++.+++.+.+.+.+.|+++||++++++.|.+++.+++ +.+.+.+. +|+++
T Consensus 201 ~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~----------------------g~~~v~~~------~g~~i 252 (450)
T PRK06116 201 APLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD----------------------GSLTLTLE------DGETL 252 (450)
T ss_pred CCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC----------------------ceEEEEEc------CCcEE
Confidence 999999999999999999999999999999999986431 22444432 56789
Q ss_pred eccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHH
Q 009310 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440 (538)
Q Consensus 361 ~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~ 440 (538)
++|.||+|+|.+|+++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++.+..|++||+.
T Consensus 253 ~~D~Vv~a~G~~p~~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~~g~~ 320 (450)
T PRK06116 253 TVDCLIWAIGREPNTDGLGLE---NAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGR--------VELTPVAIAAGRR 320 (450)
T ss_pred EeCEEEEeeCCCcCCCCCCch---hcCceECCCCcEecCCCCCc-CCCCEEEEeecCCC--------cCcHHHHHHHHHH
Confidence 999999999999998864321 23678888999999999998 99999999999864 5788999999999
Q ss_pred HHHHHHH
Q 009310 441 AGWNLWA 447 (538)
Q Consensus 441 aa~~i~~ 447 (538)
+|+||..
T Consensus 321 aa~~i~g 327 (450)
T PRK06116 321 LSERLFN 327 (450)
T ss_pred HHHHHhC
Confidence 9999974
No 16
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-36 Score=318.45 Aligned_cols=294 Identities=20% Similarity=0.252 Sum_probs=218.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc----------chh---------hhhc-CC----
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----------MLY---------ELLS-GE---- 133 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p----------~~~---------~~~~-g~---- 133 (538)
.++||+||||||||++||..|++ .|++|+|||+++.+.... ++. .... |.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~ 76 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD------LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGE 76 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCC
Confidence 35899999999999999999999 678999999875443221 111 0000 00
Q ss_pred --CCCccccc-----------cHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEEEEe
Q 009310 134 --VDAWEIAP-----------RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLS 198 (538)
Q Consensus 134 --~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lVlA 198 (538)
.+...+.. .+..+++..+++++.+.+..++.... .+..++| ..+.||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v-------------~v~~~~g~~~~~~~d~lViA 143 (471)
T PRK06467 77 PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTL-------------EVTGEDGKTTVIEFDNAIIA 143 (471)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCceEEEEcCEEEEe
Confidence 01111111 11233456689999998877654321 3444455 47999999999
Q ss_pred CCCCCC-CCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEe
Q 009310 199 LGAEPK-LDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAIN 277 (538)
Q Consensus 199 tG~~~~-~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~ 277 (538)
||++|+ .|.+++..++ +.+.+++..+... +++++|||+|++|+|+|..+.+.+.+ |++++
T Consensus 144 TGs~p~~~p~~~~~~~~---v~~~~~~~~~~~~-------------~~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~ 204 (471)
T PRK06467 144 AGSRPIQLPFIPHDDPR---IWDSTDALELKEV-------------PKRLLVMGGGIIGLEMGTVYHRLGSE---VDVVE 204 (471)
T ss_pred CCCCCCCCCCCCCCCCc---EEChHHhhccccC-------------CCeEEEECCCHHHHHHHHHHHHcCCC---EEEEe
Confidence 999997 4555653332 2344555543321 67999999999999999999888776 99999
Q ss_pred cCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcc
Q 009310 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357 (538)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g 357 (538)
+.+++++.+++++.+.+.+.|+++ |++++++.|++++.++ +++.+.+.+ ..++.
T Consensus 205 ~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~-----------------------~~~~v~~~~--~~~~~ 258 (471)
T PRK06467 205 MFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE-----------------------DGIYVTMEG--KKAPA 258 (471)
T ss_pred cCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC-----------------------CEEEEEEEe--CCCcc
Confidence 999999999999999999999998 9999999999997643 344444321 11124
Q ss_pred eEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHH
Q 009310 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437 (538)
Q Consensus 358 ~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~q 437 (538)
+++++|.||+++|.+||++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. |..+..|.+|
T Consensus 259 ~~i~~D~vi~a~G~~pn~~~l~~~---~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~--------~~la~~A~~e 326 (471)
T PRK06467 259 EPQRYDAVLVAVGRVPNGKLLDAE---KAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQ--------PMLAHKGVHE 326 (471)
T ss_pred eEEEeCEEEEeecccccCCccChh---hcCceECCCCcEeeCCCccc-CCCCEEEehhhcCC--------cccHHHHHHH
Confidence 679999999999999998865432 23688899999999999999 99999999999975 6789999999
Q ss_pred HHHHHHHHHH
Q 009310 438 ADFAGWNLWA 447 (538)
Q Consensus 438 g~~aa~~i~~ 447 (538)
|+.+|.||..
T Consensus 327 G~~aa~~i~g 336 (471)
T PRK06467 327 GHVAAEVIAG 336 (471)
T ss_pred HHHHHHHHcC
Confidence 9999999974
No 17
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-36 Score=321.44 Aligned_cols=293 Identities=23% Similarity=0.294 Sum_probs=218.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhh---------------h-----cCC----
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL---------------L-----SGE---- 133 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~---------------~-----~g~---- 133 (538)
..+|||||||||||++||..|++ .|++|+|||++. ++........ . .|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~------~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~ 75 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ------LGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAEN 75 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH------CCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCC
Confidence 35899999999999999999998 688999999976 3222110000 0 000
Q ss_pred --CCCcccc-----------ccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEc-CCceEEEeeEEEEeC
Q 009310 134 --VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSL 199 (538)
Q Consensus 134 --~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~-~~g~~~~yD~lVlAt 199 (538)
.+...+. .++...++..+++++.++++.+++... ++.. +++..+.||+|||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~-------------~v~~~~~~~~~~~d~lViAt 142 (462)
T PRK06416 76 VGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTV-------------RVMTEDGEQTYTAKNIILAT 142 (462)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCcEEEEeCEEEEeC
Confidence 0111111 123344556799999998888765432 3432 234689999999999
Q ss_pred CCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 200 G~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
|+.|..| ||.......+.+.+++..+... +++|+|||+|++|+|+|..+.+.+.+ |+++++.
T Consensus 143 Gs~p~~~--pg~~~~~~~v~~~~~~~~~~~~-------------~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~ 204 (462)
T PRK06416 143 GSRPREL--PGIEIDGRVIWTSDEALNLDEV-------------PKSLVVIGGGYIGVEFASAYASLGAE---VTIVEAL 204 (462)
T ss_pred CCCCCCC--CCCCCCCCeEEcchHhhCcccc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcC
Confidence 9998654 5653222233455555443321 57999999999999999999887665 9999999
Q ss_pred CccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceE
Q 009310 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359 (538)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~ 359 (538)
+++++.+++...+.+.+.|+++||++++++.|++++.++ +.+.+.+. .+++.++
T Consensus 205 ~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~v~v~~~---~gg~~~~ 258 (462)
T PRK06416 205 PRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-----------------------DGVTVTLE---DGGKEET 258 (462)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-----------------------CEEEEEEE---eCCeeEE
Confidence 999999999999999999999999999999999998744 34544432 1112267
Q ss_pred EeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHH
Q 009310 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439 (538)
Q Consensus 360 l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~ 439 (538)
+++|.||+|+|.+|+++++.. ...++.++ +|+|.||+++|+ +.|+|||+|||+.. ++.+..|..||+
T Consensus 259 i~~D~vi~a~G~~p~~~~l~l---~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~--------~~~~~~A~~~g~ 325 (462)
T PRK06416 259 LEADYVLVAVGRRPNTENLGL---EELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGG--------PMLAHKASAEGI 325 (462)
T ss_pred EEeCEEEEeeCCccCCCCCCc---hhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCC--------cchHHHHHHHHH
Confidence 999999999999999887531 13367777 899999999998 89999999999975 678999999999
Q ss_pred HHHHHHHH
Q 009310 440 FAGWNLWA 447 (538)
Q Consensus 440 ~aa~~i~~ 447 (538)
.+|.||.+
T Consensus 326 ~aa~ni~~ 333 (462)
T PRK06416 326 IAAEAIAG 333 (462)
T ss_pred HHHHHHcC
Confidence 99999985
No 18
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.7e-36 Score=318.72 Aligned_cols=291 Identities=22% Similarity=0.289 Sum_probs=216.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC-------cc---hh----------hhhcCC----
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------PM---LY----------ELLSGE---- 133 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-------p~---~~----------~~~~g~---- 133 (538)
.++|||||||||||++||..|++ .|++|+|||+.. ++.. |. +. ....|.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 76 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG------LGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGG 76 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 35899999999999999999999 688999999864 1111 10 00 000111
Q ss_pred ---CCCcccc-----------ccHHHHhccC-CcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEe
Q 009310 134 ---VDAWEIA-----------PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198 (538)
Q Consensus 134 ---~~~~~~~-----------~~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlA 198 (538)
.+...+. ..+..++++. +++++.++...++. + ++..+ +..+.||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~--~-------------~v~v~-~~~~~~d~lViA 140 (463)
T PRK06370 77 PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESP--N-------------TVRVG-GETLRAKRIFIN 140 (463)
T ss_pred cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccC--C-------------EEEEC-cEEEEeCEEEEc
Confidence 1111111 1233445555 89998887654431 1 45553 457999999999
Q ss_pred CCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec
Q 009310 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (538)
Q Consensus 199 tG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~ 278 (538)
||+.|+.|++||.+.. .+.+.++....... +++|+|||+|++|+|+|..+++.+.+ |+++++
T Consensus 141 TGs~p~~p~i~G~~~~--~~~~~~~~~~~~~~-------------~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~ 202 (463)
T PRK06370 141 TGARAAIPPIPGLDEV--GYLTNETIFSLDEL-------------PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIER 202 (463)
T ss_pred CCCCCCCCCCCCCCcC--ceEcchHhhCcccc-------------CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEc
Confidence 9999999999997532 22333443322211 68999999999999999999887766 999999
Q ss_pred CCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcce
Q 009310 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (538)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~ 358 (538)
.+.+++..++++.+.+.+.|++.||++++++.|.+++.++ +++.+.+. ..+++.
T Consensus 203 ~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-----------------------~~~~v~~~---~~~~~~ 256 (463)
T PRK06370 203 GPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDG-----------------------DGIAVGLD---CNGGAP 256 (463)
T ss_pred CCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEEE---eCCCce
Confidence 9999998899999999999999999999999999998753 23333221 112456
Q ss_pred EEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
++++|.||+|+|.+|+++.+... ..++.++++|+|.||+++|+ +.|+|||+|||+.. +..+..|..||
T Consensus 257 ~i~~D~Vi~A~G~~pn~~~l~l~---~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~--------~~~~~~A~~~g 324 (463)
T PRK06370 257 EITGSHILVAVGRVPNTDDLGLE---AAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR--------GAFTHTAYNDA 324 (463)
T ss_pred EEEeCEEEECcCCCcCCCCcCch---hhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 89999999999999998743111 23678888999999999999 99999999999875 67889999999
Q ss_pred HHHHHHHHH
Q 009310 439 DFAGWNLWA 447 (538)
Q Consensus 439 ~~aa~~i~~ 447 (538)
+.+|.||..
T Consensus 325 ~~aa~ni~~ 333 (463)
T PRK06370 325 RIVAANLLD 333 (463)
T ss_pred HHHHHHHhC
Confidence 999999975
No 19
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.9e-36 Score=317.79 Aligned_cols=291 Identities=17% Similarity=0.224 Sum_probs=218.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC-cccCcchhhh---------hcCCCCCc-------cccc
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER-FVFKPMLYEL---------LSGEVDAW-------EIAP 141 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~-~~~~p~~~~~---------~~g~~~~~-------~~~~ 141 (538)
.+|||||||||||++||..|++ .|++|+|||+++. ++........ .....+.. .+..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~------~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK------AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVN 76 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH------CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999 6789999999754 2222110000 00001110 0001
Q ss_pred cH-----HHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCce-EEEeeEEEEeCCCCCCCCCCCCccccC
Q 009310 142 RF-----ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAEPKLDVVPGAAEFA 215 (538)
Q Consensus 142 ~~-----~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~yD~lVlAtG~~~~~p~ipG~~~~~ 215 (538)
.+ ..+.+..+++++.+++..++.... .+...++. .+.||+||||||++|..|++||+++..
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~-------------~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~ 143 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDGQAEFINNHSL-------------RVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTP 143 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEEEEEEecCCEE-------------EEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCC
Confidence 11 122233489999999888875432 45555664 699999999999999999999975322
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHH
Q 009310 216 FPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAAL 295 (538)
Q Consensus 216 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~ 295 (538)
.+.+.++...+.. .+++|+|||+|++|+|+|..+.+++.+ |+++++.+.+++..++++.+.+.
T Consensus 144 -~v~~~~~~~~~~~-------------~~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~~~~~~~~~l~ 206 (441)
T PRK08010 144 -GVYDSTGLLNLKE-------------LPGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFLPREDRDIADNIA 206 (441)
T ss_pred -CEEChhHhhcccc-------------cCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCCcCHHHHHHHH
Confidence 1223333222111 167999999999999999999987766 99999999999988999999999
Q ss_pred HHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCC
Q 009310 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (538)
Q Consensus 296 ~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~ 375 (538)
+.|+++||++++++.|++++.++ +.+.+.. ++.++++|.|++|+|.+||+
T Consensus 207 ~~l~~~gV~v~~~~~v~~i~~~~-----------------------~~v~v~~-------~~g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 207 TILRDQGVDIILNAHVERISHHE-----------------------NQVQVHS-------EHAQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEE-------cCCeEEeCEEEEeecCCcCC
Confidence 99999999999999999998643 3454542 22358999999999999998
Q ss_pred CCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
+++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++.++.|..||+.++.||..
T Consensus 257 ~~l~~~---~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 257 ASLHPE---NAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGG--------LQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred CCcCch---hcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC--------ccchhHHHHHHHHHHHHHcC
Confidence 765322 23677888999999999999 89999999999986 67889999999999999864
No 20
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1e-35 Score=315.71 Aligned_cols=292 Identities=17% Similarity=0.172 Sum_probs=220.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchh------------hhh---------cC----
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY------------ELL---------SG---- 132 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~------------~~~---------~g---- 132 (538)
..+||+||||||||++||.+|++ .|++|+|||+++.++...... ..+ .+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~------~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK------LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 34899999999999999999998 678999999975443221000 000 00
Q ss_pred -CCCCcccc-----------ccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCce--EEEeeEEEEe
Q 009310 133 -EVDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLVLS 198 (538)
Q Consensus 133 -~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~yD~lVlA 198 (538)
..+...+. ..+...+.+.+++++.+++..++.... ++...++. .+.||+||||
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~~d~lviA 144 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTV-------------EVECPDGEVETLTADKIVIA 144 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEE-------------EEEeCCCceEEEEcCEEEEc
Confidence 00111111 112334556789999998877765432 35555553 7999999999
Q ss_pred CCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec
Q 009310 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (538)
Q Consensus 199 tG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~ 278 (538)
||+.|..|++++.... .+.+.++...+... +++|+|||+|++|+|+|..+++.+.+ |+++++
T Consensus 145 TGs~p~~p~~~~~~~~--~v~~~~~~~~~~~~-------------~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~ 206 (461)
T PRK05249 145 TGSRPYRPPDVDFDHP--RIYDSDSILSLDHL-------------PRSLIIYGAGVIGCEYASIFAALGVK---VTLINT 206 (461)
T ss_pred CCCCCCCCCCCCCCCC--eEEcHHHhhchhhc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEec
Confidence 9999998887765321 22333333332211 68999999999999999999988766 999999
Q ss_pred CCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcce
Q 009310 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (538)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~ 358 (538)
.+++++.+++++.+.+.+.|+++||++++++.|+++..++ +++.+.+. +++
T Consensus 207 ~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~ 257 (461)
T PRK05249 207 RDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGD-----------------------DGVIVHLK------SGK 257 (461)
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC-----------------------CeEEEEEC------CCC
Confidence 9999999999999999999999999999999999998643 34444432 566
Q ss_pred EEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
++++|.||+|+|.+||++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +..+..|.+||
T Consensus 258 ~i~~D~vi~a~G~~p~~~~l~l~---~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~--------~~~~~~A~~~g 325 (461)
T PRK05249 258 KIKADCLLYANGRTGNTDGLNLE---NAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF--------PSLASASMDQG 325 (461)
T ss_pred EEEeCEEEEeecCCccccCCCch---hhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC--------cccHhHHHHHH
Confidence 89999999999999998765321 23678888999999999998 89999999999975 67899999999
Q ss_pred HHHHHHHHH
Q 009310 439 DFAGWNLWA 447 (538)
Q Consensus 439 ~~aa~~i~~ 447 (538)
+.+|.||..
T Consensus 326 ~~aa~~i~g 334 (461)
T PRK05249 326 RIAAQHAVG 334 (461)
T ss_pred HHHHHHHcC
Confidence 999999974
No 21
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=8e-36 Score=316.36 Aligned_cols=290 Identities=25% Similarity=0.345 Sum_probs=218.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc----------h-----hhhhc----C------CC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------L-----YELLS----G------EV 134 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~----------~-----~~~~~----g------~~ 134 (538)
+|||||||||||++||..|++ .|++|+|||++. +....+ + ..... | ..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~------~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~ 73 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE------LGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAV 73 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCcc
Confidence 589999999999999999999 678999999875 222211 0 00000 0 00
Q ss_pred CCc-------cccc-----cHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc-eEEEeeEEEEeCCC
Q 009310 135 DAW-------EIAP-----RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (538)
Q Consensus 135 ~~~-------~~~~-----~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~yD~lVlAtG~ 201 (538)
+.. ++.. .+..++++.+++++.+++..++. +++.++++ ..+.||+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~---------------~~v~v~~g~~~~~~~~lIiATGs 138 (463)
T TIGR02053 74 DFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDP---------------KTVKVDLGREVRGAKRFLIATGA 138 (463)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccC---------------CEEEEcCCeEEEEeCEEEEcCCC
Confidence 110 1110 13345666789999988776542 14666554 36899999999999
Q ss_pred CCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 202 ~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.|..|++||.++. .+.+.+++...... +++++|||+|.+|+|+|..|.+.+.+ |+++++.++
T Consensus 139 ~p~~p~i~G~~~~--~~~~~~~~~~~~~~-------------~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~ 200 (463)
T TIGR02053 139 RPAIPPIPGLKEA--GYLTSEEALALDRI-------------PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDR 200 (463)
T ss_pred CCCCCCCCCcccC--ceECchhhhCcccC-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCc
Confidence 9999999997543 23344443322211 57999999999999999999987766 999999999
Q ss_pred cCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEe
Q 009310 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (538)
Q Consensus 282 ~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~ 361 (538)
+++.+++++...+.+.|++.||++++++.|++++.++ +.+.+.+. ..+++++++
T Consensus 201 ~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~~~v~~~---~~~~~~~i~ 254 (463)
T TIGR02053 201 LLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG-----------------------GGKIITVE---KPGGQGEVE 254 (463)
T ss_pred CCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-----------------------CEEEEEEE---eCCCceEEE
Confidence 9999999999999999999999999999999998643 22333321 112357899
Q ss_pred ccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHH
Q 009310 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (538)
Q Consensus 362 ~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~a 441 (538)
+|.||+|+|.+|+++.+.. ...+++++++|+|.||+++|+ +.|+|||+|||+.. +..+..|.+||+.+
T Consensus 255 ~D~ViiA~G~~p~~~~l~l---~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~--------~~~~~~A~~~g~~a 322 (463)
T TIGR02053 255 ADELLVATGRRPNTDGLGL---EKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGG--------LQLEYVAAKEGVVA 322 (463)
T ss_pred eCEEEEeECCCcCCCCCCc---cccCCEECCCCcEeECCCccC-CCCCEEEeeecCCC--------cccHhHHHHHHHHH
Confidence 9999999999999874311 133677888999999999999 99999999999985 67899999999999
Q ss_pred HHHHHH
Q 009310 442 GWNLWA 447 (538)
Q Consensus 442 a~~i~~ 447 (538)
|.||..
T Consensus 323 a~ni~~ 328 (463)
T TIGR02053 323 AENALG 328 (463)
T ss_pred HHHhcC
Confidence 999974
No 22
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.2e-35 Score=317.08 Aligned_cols=288 Identities=18% Similarity=0.253 Sum_probs=218.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC---------CCccc----------Ccchh-----hhh---
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS---------ERFVF----------KPMLY-----ELL--- 130 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~---------~~~~~----------~p~~~-----~~~--- 130 (538)
..+||+||||||||+.||..+++ .|++|+|||+. ..++. +.++. ..+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~ 151 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN------FGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES 151 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999999 68899999961 11111 11111 000
Q ss_pred --cCC-------CCC-----------ccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEE
Q 009310 131 --SGE-------VDA-----------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190 (538)
Q Consensus 131 --~g~-------~~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 190 (538)
.|. .+. ..+...+...+++.+++++.++++.+++. ++.. +|..+
T Consensus 152 ~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~---------------~V~v-~G~~~ 215 (558)
T PLN02546 152 RGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH---------------TVDV-DGKLY 215 (558)
T ss_pred hhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC---------------EEEE-CCEEE
Confidence 010 010 11122344556667999999998888754 2444 45689
Q ss_pred EeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhc
Q 009310 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEK 270 (538)
Q Consensus 191 ~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~ 270 (538)
.||+||||||++|..|++||.+ + +.+.+++..+... +++|+|||+|++|+|+|..+.+++.+
T Consensus 216 ~~D~LVIATGs~p~~P~IpG~~-~---v~~~~~~l~~~~~-------------~k~V~VIGgG~iGvE~A~~L~~~g~~- 277 (558)
T PLN02546 216 TARNILIAVGGRPFIPDIPGIE-H---AIDSDAALDLPSK-------------PEKIAIVGGGYIALEFAGIFNGLKSD- 277 (558)
T ss_pred ECCEEEEeCCCCCCCCCCCChh-h---ccCHHHHHhcccc-------------CCeEEEECCCHHHHHHHHHHHhcCCe-
Confidence 9999999999999999999964 2 2234443332221 67999999999999999999887665
Q ss_pred CcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecc
Q 009310 271 GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350 (538)
Q Consensus 271 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 350 (538)
|+++++.+.+++.++++..+.+++.|+++||++++++.+.++..+.+ +.+.+...
T Consensus 278 --Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~----------------------g~v~v~~~- 332 (558)
T PLN02546 278 --VHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD----------------------GSLSLKTN- 332 (558)
T ss_pred --EEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC----------------------CEEEEEEC-
Confidence 99999999999999999999999999999999999999999975321 33444321
Q ss_pred cccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCcc
Q 009310 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430 (538)
Q Consensus 351 ~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~ 430 (538)
+++...+|.||+++|++||++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +..
T Consensus 333 -----~g~~~~~D~Viva~G~~Pnt~~L~le---~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~--------~~l 395 (558)
T PLN02546 333 -----KGTVEGFSHVMFATGRKPNTKNLGLE---EVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR--------INL 395 (558)
T ss_pred -----CeEEEecCEEEEeeccccCCCcCChh---hcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC--------ccc
Confidence 44555699999999999998864211 23678888999999999998 99999999999975 678
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009310 431 AQVAFQQADFAGWNLWA 447 (538)
Q Consensus 431 ~~~A~~qg~~aa~~i~~ 447 (538)
+..|.+||+.+|.||..
T Consensus 396 ~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 396 TPVALMEGGALAKTLFG 412 (558)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88999999999999974
No 23
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-35 Score=313.40 Aligned_cols=295 Identities=23% Similarity=0.284 Sum_probs=211.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc----------ch-----hhhhcC-------C---
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----------ML-----YELLSG-------E--- 133 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p----------~~-----~~~~~g-------~--- 133 (538)
++||+||||||||++||..+++ .|++|+|||+++.++... ++ .+.+.+ .
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~------~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~ 76 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ------LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK 76 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc
Confidence 3899999999999999999998 688999999854333321 11 110111 0
Q ss_pred --CCCcccc-----------ccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEEEEe
Q 009310 134 --VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLS 198 (538)
Q Consensus 134 --~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lVlA 198 (538)
.+...+. ..+...++..+++++.+.. .++...++ .+..+++ ..+.||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~~~v------------~v~~~~g~~~~~~~d~lVIA 143 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGVGKV------------VVKAEDGSETQLEAKDIVIA 143 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCEE------------EEEcCCCceEEEEeCEEEEe
Confidence 0000000 1122334455789988875 44333322 3444455 36999999999
Q ss_pred CCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec
Q 009310 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (538)
Q Consensus 199 tG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~ 278 (538)
||++|. ++||.......+.+.+++..+.. .+++|+|||+|++|+|+|..+.+.+.+ |+++++
T Consensus 144 TGs~p~--~ipg~~~~~~~~~~~~~~~~~~~-------------~~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~ 205 (466)
T PRK06115 144 TGSEPT--PLPGVTIDNQRIIDSTGALSLPE-------------VPKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEY 205 (466)
T ss_pred CCCCCC--CCCCCCCCCCeEECHHHHhCCcc-------------CCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeC
Confidence 999884 46775311111223333332211 168999999999999999999887766 999999
Q ss_pred CCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcce
Q 009310 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (538)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~ 358 (538)
.+++++.++++..+.+.+.|++.||++++++.|++++.++ +++.+.+... .+++++
T Consensus 206 ~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~v~v~~~~~-~~g~~~ 261 (466)
T PRK06115 206 LDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGA-----------------------DGVSLTLEPA-AGGAAE 261 (466)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcC-----------------------CeEEEEEEEc-CCCcee
Confidence 9999999999999999999999999999999999998643 3444433211 112456
Q ss_pred EEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
.+++|.||+++|.+||++.+... ..++.++++| +.||+++|+ +.|+|||+|||+.. +.+++.|.+||
T Consensus 262 ~i~~D~vi~a~G~~pn~~~l~~~---~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~--------~~la~~A~~~g 328 (466)
T PRK06115 262 TLQADYVLVAIGRRPYTQGLGLE---TVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSG--------PMLAHKAEDEA 328 (466)
T ss_pred EEEeCEEEEccCCccccccCCcc---cccceeCCCC-EEECCCeec-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 89999999999999998765321 2356677777 778999998 99999999999985 67999999999
Q ss_pred HHHHHHHHH
Q 009310 439 DFAGWNLWA 447 (538)
Q Consensus 439 ~~aa~~i~~ 447 (538)
+.+|+||..
T Consensus 329 ~~aa~~i~~ 337 (466)
T PRK06115 329 VACIERIAG 337 (466)
T ss_pred HHHHHHHcC
Confidence 999999975
No 24
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=2.2e-35 Score=312.29 Aligned_cols=291 Identities=22% Similarity=0.297 Sum_probs=217.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC---------CcccCcchhhh----------hcCCC------
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLYEL----------LSGEV------ 134 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~---------~~~~~p~~~~~----------~~g~~------ 134 (538)
++|+|||||++|+.||..+++ .|++|+|||++. +.+.+.++... ..|..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~------~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 75 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ------LGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGE 75 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcc
Confidence 689999999999999999998 688999999875 11111122110 00110
Q ss_pred ---CCccc-----------cccHHHHhccCCcEEEEeeEEEEc--CCCCcCcCCCceeecccEEEcCCce--EEEeeEEE
Q 009310 135 ---DAWEI-----------APRFADLLANTGVQFFKDRVKLLC--PSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLV 196 (538)
Q Consensus 135 ---~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~--~~~~~~~~~~~~~~~~~~v~~~~g~--~~~yD~lV 196 (538)
+...+ ...+.+.++..+++++.++++.++ .+.+. .++.+++|. .+.||+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~-----------v~V~~~~g~~~~~~~d~lV 144 (466)
T PRK07845 76 ARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHR-----------VKVTTADGGEETLDADVVL 144 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCE-----------EEEEeCCCceEEEecCEEE
Confidence 00000 112344556679999999888754 21110 135555554 79999999
Q ss_pred EeCCCCCCCCCCCCcc-ccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEE
Q 009310 197 LSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQA 275 (538)
Q Consensus 197 lAtG~~~~~p~ipG~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtl 275 (538)
||||+.|..|+.++.. +..+ +.++...+... +++++|||+|.+|+|+|..|++++.+ |++
T Consensus 145 iATGs~p~~~p~~~~~~~~v~---~~~~~~~~~~~-------------~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtl 205 (466)
T PRK07845 145 IATGASPRILPTAEPDGERIL---TWRQLYDLDEL-------------PEHLIVVGSGVTGAEFASAYTELGVK---VTL 205 (466)
T ss_pred EcCCCCCCCCCCCCCCCceEE---eehhhhccccc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEE
Confidence 9999999876554432 2222 33333322211 57999999999999999999887766 999
Q ss_pred EecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCC
Q 009310 276 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (538)
Q Consensus 276 v~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 355 (538)
+++.+++++.+++...+.+.+.|+++||++++++.+.+++.++ +++.+.+.
T Consensus 206 i~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-----------------------~~~~v~~~------ 256 (466)
T PRK07845 206 VSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTG-----------------------DGVVVTLT------ 256 (466)
T ss_pred EEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-----------------------CEEEEEEC------
Confidence 9999999999999999999999999999999999999997543 34545432
Q ss_pred cceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHH
Q 009310 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435 (538)
Q Consensus 356 ~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~ 435 (538)
+++++++|.||+++|++||++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++.+..|.
T Consensus 257 ~g~~l~~D~vl~a~G~~pn~~~l~l~---~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A~ 324 (466)
T PRK07845 257 DGRTVEGSHALMAVGSVPNTAGLGLE---EAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV--------LPLASVAA 324 (466)
T ss_pred CCcEEEecEEEEeecCCcCCCCCCch---hhCceECCCCcEeECCCccc-CCCCEEEEeeccCC--------ccchhHHH
Confidence 56789999999999999998764211 33688889999999999999 99999999999986 67899999
Q ss_pred HHHHHHHHHHHH
Q 009310 436 QQADFAGWNLWA 447 (538)
Q Consensus 436 ~qg~~aa~~i~~ 447 (538)
.||+.++.||..
T Consensus 325 ~~g~~aa~~i~g 336 (466)
T PRK07845 325 MQGRIAMYHALG 336 (466)
T ss_pred HHHHHHHHHHcC
Confidence 999999999974
No 25
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.3e-35 Score=309.50 Aligned_cols=289 Identities=18% Similarity=0.281 Sum_probs=215.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc-ccCcchhhhhcC---------CCCCccccc-------
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF-VFKPMLYELLSG---------EVDAWEIAP------- 141 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~-~~~p~~~~~~~g---------~~~~~~~~~------- 141 (538)
.+|||||||||||++||..|++ .|++|+|||+++.. .........++. ..+...+..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~------~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~ 76 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS------AGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTS 76 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh------CCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998 67899999998642 222111110100 011111111
Q ss_pred ----cHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcC---CceEEEeeEEEEeCCCCCCCCCCCCcccc
Q 009310 142 ----RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVEYDWLVLSLGAEPKLDVVPGAAEF 214 (538)
Q Consensus 142 ----~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~~yD~lVlAtG~~~~~p~ipG~~~~ 214 (538)
...+.+.+.+++++.++...++.. ++... +...+.||+||||||+.|+.|++||..+.
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~~~~~~~~---------------~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~ 141 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAEAHFVSNK---------------VIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADS 141 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEEEEEccCC---------------EEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCC
Confidence 112345567899998887655321 23332 23479999999999999999999997533
Q ss_pred CcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHH
Q 009310 215 AFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAA 294 (538)
Q Consensus 215 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~ 294 (538)
. .+.+..+...+... +++|+|||+|++|+|+|..+++.+.+ |+++++.+.+++..++.+.+.+
T Consensus 142 ~-~v~~~~~~~~~~~~-------------~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~~~~~~~~~~ 204 (438)
T PRK07251 142 K-HVYDSTGIQSLETL-------------PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTILPREEPSVAALA 204 (438)
T ss_pred C-cEEchHHHhcchhc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccCCCCCHHHHHHH
Confidence 2 12233333332211 67999999999999999999887665 9999999999998889999999
Q ss_pred HHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCC
Q 009310 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (538)
Q Consensus 295 ~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~ 374 (538)
.+.|+++||++++++.|++++.++ +.+.+.. +++++++|.||+|+|.+|+
T Consensus 205 ~~~l~~~GI~i~~~~~V~~i~~~~-----------------------~~v~v~~-------~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 205 KQYMEEDGITFLLNAHTTEVKNDG-----------------------DQVLVVT-------EDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHcCCEEEcCCEEEEEEecC-----------------------CEEEEEE-------CCeEEEcCEEEEeeCCCCC
Confidence 999999999999999999998643 3444431 4568999999999999999
Q ss_pred CCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 375 ~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
.+.+... ..++.++++|++.||+++|+ +.|+|||+|||+.. +.....|..||+.++.++.+
T Consensus 255 ~~~l~l~---~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~--------~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 255 TEPLGLE---NTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGG--------PQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred cccCCch---hcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC--------cccHhHHHHHHHHHHHHHcC
Confidence 8765321 22566788899999999999 89999999999975 67888999999999988874
No 26
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=3.4e-35 Score=310.36 Aligned_cols=295 Identities=20% Similarity=0.243 Sum_probs=213.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC--------CCccc----------Ccchhhh-----hc---
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS--------ERFVF----------KPMLYEL-----LS--- 131 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~--------~~~~~----------~p~~~~~-----~~--- 131 (538)
..+||+||||||||+.||..++++ .|.+|+|||++ +.++. +.++... ..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~-----~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~ 76 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATL-----YKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESA 76 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHh-----cCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhh
Confidence 358999999999999999999983 16799999973 22222 1111100 00
Q ss_pred --CC--------CCCcc-----------ccccHHHHhcc-CCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcC---C
Q 009310 132 --GE--------VDAWE-----------IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---S 186 (538)
Q Consensus 132 --g~--------~~~~~-----------~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~ 186 (538)
|. .+... +...+...++. .++++++++..-+++..- .|... +
T Consensus 77 ~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v-------------~V~~~~~~~ 143 (486)
T TIGR01423 77 GFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVV-------------LVRESADPK 143 (486)
T ss_pred ccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEE-------------EEeeccCCC
Confidence 10 00000 11112233444 489999988665543211 12210 1
Q ss_pred ---ceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHH
Q 009310 187 ---GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATV 263 (538)
Q Consensus 187 ---g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l 263 (538)
.+.+.||+||||||+.|..|++||.+. +.+.+++..+.. .+++++|||||++|+|+|..+
T Consensus 144 ~~~~~~~~~d~lIIATGs~p~~p~i~G~~~----~~~~~~~~~~~~-------------~~~~vvIIGgG~iG~E~A~~~ 206 (486)
T TIGR01423 144 SAVKERLQAEHILLATGSWPQMLGIPGIEH----CISSNEAFYLDE-------------PPRRVLTVGGGFISVEFAGIF 206 (486)
T ss_pred CCcceEEECCEEEEecCCCCCCCCCCChhh----eechhhhhcccc-------------CCCeEEEECCCHHHHHHHHHH
Confidence 247999999999999999999999642 224444432221 168999999999999999988
Q ss_pred HHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCc
Q 009310 264 SERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 343 (538)
Q Consensus 264 ~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (538)
..+......|+++++.+++++.+++++.+.+.+.|+++||++++++.++++..+++ +.
T Consensus 207 ~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~----------------------~~ 264 (486)
T TIGR01423 207 NAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNAD----------------------GS 264 (486)
T ss_pred HHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC----------------------ce
Confidence 76522112399999999999999999999999999999999999999999986431 22
Q ss_pred eEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCC
Q 009310 344 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 423 (538)
Q Consensus 344 v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~ 423 (538)
+.+.+. +++++++|.||+++|.+|+++++... ..+++++++|+|.||+++|| +.|+|||+|||+..
T Consensus 265 ~~v~~~------~g~~i~~D~vl~a~G~~Pn~~~l~l~---~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~~---- 330 (486)
T TIGR01423 265 KHVTFE------SGKTLDVDVVMMAIGRVPRTQTLQLD---KVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTDR---- 330 (486)
T ss_pred EEEEEc------CCCEEEcCEEEEeeCCCcCcccCCch---hhCceECCCCCEecCCCCcC-CCCCEEEeeecCCC----
Confidence 333322 55689999999999999998765321 23678888999999999998 99999999999975
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHH
Q 009310 424 GRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 424 ~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
+..++.|.+||+++|.||..
T Consensus 331 ----~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 331 ----VMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred ----cccHHHHHHHHHHHHHHHhC
Confidence 67889999999999999974
No 27
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.3e-35 Score=308.48 Aligned_cols=290 Identities=22% Similarity=0.315 Sum_probs=216.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc----------Ccchh-----hhh---c---CC-
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF----------KPMLY-----ELL---S---GE- 133 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~----------~p~~~-----~~~---~---g~- 133 (538)
....+||+||||||||++||..|++ .|.+|+|||++. ++. +.++. ... . |.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~------~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~ 75 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATE------RGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLS 75 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcc
Confidence 3456899999999999999999999 577999999864 111 11100 000 0 10
Q ss_pred -----CCCcccccc------------HHHHhcc-CCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEee
Q 009310 134 -----VDAWEIAPR------------FADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYD 193 (538)
Q Consensus 134 -----~~~~~~~~~------------~~~~~~~-~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD 193 (538)
.+...+... ++..++. .+++++.++++.+++... .|.+.++ .++.||
T Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~-------------~V~~~~g~~~~~~~d 142 (468)
T PRK14694 76 AQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTL-------------TVTLNDGGEQTVHFD 142 (468)
T ss_pred cCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEE-------------EEEecCCCeEEEECC
Confidence 011111101 1222333 379999999999986653 4666665 479999
Q ss_pred EEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcE
Q 009310 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIV 273 (538)
Q Consensus 194 ~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~V 273 (538)
+||||||+.|+.|++||+++. .+.+.+++..+... +++++|||+|++|+|+|..|.+++.+ |
T Consensus 143 ~lViATGs~p~~p~i~G~~~~--~~~~~~~~~~l~~~-------------~~~vvViG~G~~G~E~A~~l~~~g~~---V 204 (468)
T PRK14694 143 RAFIGTGARPAEPPVPGLAET--PYLTSTSALELDHI-------------PERLLVIGASVVALELAQAFARLGSR---V 204 (468)
T ss_pred EEEEeCCCCCCCCCCCCCCCC--ceEcchhhhchhcC-------------CCeEEEECCCHHHHHHHHHHHHcCCe---E
Confidence 999999999999999998543 22344444433221 57999999999999999999988766 9
Q ss_pred EEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeeccccc
Q 009310 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353 (538)
Q Consensus 274 tlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 353 (538)
+++++ +++++..++++.+.+.+.|++.||++++++.+.+++.++ +.+.+..
T Consensus 205 tlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-----------------------~~~~v~~----- 255 (468)
T PRK14694 205 TVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-----------------------REFILET----- 255 (468)
T ss_pred EEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEE-----
Confidence 99987 577888889999999999999999999999999997643 3344432
Q ss_pred CCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHH
Q 009310 354 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433 (538)
Q Consensus 354 ~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~ 433 (538)
++.++++|.||+|+|.+|+++++... ..+++. ++|+|.||+++|+ +.|+|||+|||+.. +..+..
T Consensus 256 --~~~~i~~D~vi~a~G~~pn~~~l~l~---~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~ 320 (468)
T PRK14694 256 --NAGTLRAEQLLVATGRTPNTENLNLE---SIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ--------PQFVYV 320 (468)
T ss_pred --CCCEEEeCEEEEccCCCCCcCCCCch---hcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC--------cccHHH
Confidence 23369999999999999998876321 234554 5789999999999 99999999999986 678889
Q ss_pred HHHHHHHHHHHHHH
Q 009310 434 AFQQADFAGWNLWA 447 (538)
Q Consensus 434 A~~qg~~aa~~i~~ 447 (538)
|..||+.+|.||..
T Consensus 321 A~~~G~~aa~~i~~ 334 (468)
T PRK14694 321 AAAGGSRAAINMTG 334 (468)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999974
No 28
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=1e-34 Score=305.55 Aligned_cols=285 Identities=20% Similarity=0.263 Sum_probs=214.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC----CcccC--c---chh-----hhh-----cCC------C
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE----RFVFK--P---MLY-----ELL-----SGE------V 134 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~----~~~~~--p---~~~-----~~~-----~g~------~ 134 (538)
+||+||||||||.+||..+ .|.+|+|||++. +..+. | ++. ... .|. .
T Consensus 2 yD~vVIG~G~~g~~aa~~~--------~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 73 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--------ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGV 73 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--------CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcC
Confidence 7999999999999998653 467999999864 11111 1 110 000 011 1
Q ss_pred CCcccc-------cc-----HHHH-hccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC
Q 009310 135 DAWEIA-------PR-----FADL-LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (538)
Q Consensus 135 ~~~~~~-------~~-----~~~~-~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~ 201 (538)
+...+. .. .... ++..+++++.++...++. ++|.+.++..+.||+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~---------------~~V~v~~g~~~~~d~lViATGs 138 (451)
T PRK07846 74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGP---------------KTLRTGDGEEITADQVVIAAGS 138 (451)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecC---------------CEEEECCCCEEEeCEEEEcCCC
Confidence 111111 11 1122 445678888887766632 2577777778999999999999
Q ss_pred CCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 202 ~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
+|+.|++||.... .+.+.+++..+... +++|+|||+|++|+|+|..+++.+.+ |+++++.++
T Consensus 139 ~p~~p~i~g~~~~--~~~~~~~~~~l~~~-------------~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ 200 (451)
T PRK07846 139 RPVIPPVIADSGV--RYHTSDTIMRLPEL-------------PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGR 200 (451)
T ss_pred CCCCCCCCCcCCc--cEEchHHHhhhhhc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCc
Confidence 9999999986422 34556665554332 67999999999999999999987766 999999999
Q ss_pred cCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEe
Q 009310 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (538)
Q Consensus 282 ~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~ 361 (538)
+++.++++..+.+.+.+ +.||++++++.+++++.++ +++.+.+. ++++++
T Consensus 201 ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~i~ 250 (451)
T PRK07846 201 LLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-----------------------SGVTLRLD------DGSTVE 250 (451)
T ss_pred cccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-----------------------CEEEEEEC------CCcEee
Confidence 99988888887776655 5689999999999998643 34555432 567899
Q ss_pred ccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHH
Q 009310 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (538)
Q Consensus 362 ~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~a 441 (538)
+|.||+|+|.+|+++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++.++.|.+||+++
T Consensus 251 ~D~vl~a~G~~pn~~~l~~~---~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~--------~~l~~~A~~~g~~~ 318 (451)
T PRK07846 251 ADVLLVATGRVPNGDLLDAA---AAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP--------YQLKHVANHEARVV 318 (451)
T ss_pred cCEEEEEECCccCccccCch---hcCceECCCCcEeECCCccc-CCCCEEEEeecCCC--------ccChhHHHHHHHHH
Confidence 99999999999999886422 23688889999999999998 99999999999985 67889999999999
Q ss_pred HHHHHH
Q 009310 442 GWNLWA 447 (538)
Q Consensus 442 a~~i~~ 447 (538)
|+||..
T Consensus 319 a~ni~~ 324 (451)
T PRK07846 319 QHNLLH 324 (451)
T ss_pred HHHHcC
Confidence 999974
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.1e-34 Score=309.50 Aligned_cols=314 Identities=19% Similarity=0.276 Sum_probs=220.2
Q ss_pred CCCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC----------cchh-----h----h-hcCC
Q 009310 74 WPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK----------PMLY-----E----L-LSGE 133 (538)
Q Consensus 74 ~~~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~----------p~~~-----~----~-~~g~ 133 (538)
++...++||+|||||+||++||..+++ .|.+|+|||++. ++.. .++. . . ..|.
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~------~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi 115 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAAR------NKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGF 115 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHH------cCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCC
Confidence 444567899999999999999999999 577999999863 2221 1110 0 0 0010
Q ss_pred -----CCCccc-----------cccHHHHhccCCcEEEEeeEEEEcCCCCcC-----cCC--CceeecccEE------Ec
Q 009310 134 -----VDAWEI-----------APRFADLLANTGVQFFKDRVKLLCPSDHLG-----VNG--PMACTHGGTV------LL 184 (538)
Q Consensus 134 -----~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~-----~~~--~~~~~~~~~v------~~ 184 (538)
.+...+ ...+.+.++..+|+++.+...-+++..-.. +.. ........++ ..
T Consensus 116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (561)
T PTZ00058 116 DTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQL 195 (561)
T ss_pred CccCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceec
Confidence 111111 112334455678999998765444322100 000 0000000112 23
Q ss_pred CCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHH
Q 009310 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVS 264 (538)
Q Consensus 185 ~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~ 264 (538)
+++..+.||+||||||+.|..|++||.+ +. .+.++...+. .+++|+|||+|.+|+|+|..+.
T Consensus 196 ~~g~~i~ad~lVIATGS~P~~P~IpG~~-~v---~ts~~~~~l~--------------~pk~VvIIGgG~iGlE~A~~l~ 257 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGNKPIFPDVKGKE-FT---ISSDDFFKIK--------------EAKRIGIAGSGYIAVELINVVN 257 (561)
T ss_pred CCCcEEECCEEEEecCCCCCCCCCCCce-eE---EEHHHHhhcc--------------CCCEEEEECCcHHHHHHHHHHH
Confidence 4666899999999999999999999963 22 2333332211 1579999999999999999999
Q ss_pred HHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCce
Q 009310 265 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344 (538)
Q Consensus 265 ~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 344 (538)
+++.+ |+++++.+++++.+++++.+.+.+.|+++||+++++..|.+++++++ +++
T Consensus 258 ~~G~~---Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~----------------------~~v 312 (561)
T PTZ00058 258 RLGAE---SYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKE----------------------KNL 312 (561)
T ss_pred HcCCc---EEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC----------------------CcE
Confidence 88776 99999999999999999999999999999999999999999986431 234
Q ss_pred EEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccC---
Q 009310 345 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--- 421 (538)
Q Consensus 345 ~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~--- 421 (538)
.+... ++++++++|.|++|+|++|+++.+.... .++ .+++|+|.||+++|| +.|+|||+|||+..++
T Consensus 313 ~v~~~-----~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~---~~~-~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~ 382 (561)
T PTZ00058 313 TIYLS-----DGRKYEHFDYVIYCVGRSPNTEDLNLKA---LNI-KTPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKNQE 382 (561)
T ss_pred EEEEC-----CCCEEEECCEEEECcCCCCCccccCccc---cce-ecCCCeEEECcCCcc-CCCCEEEeEeccCcccccc
Confidence 43321 1446799999999999999988775322 122 346799999999998 9999999999998432
Q ss_pred ---------------------CCCCC--CCccHHHHHHHHHHHHHHHHH
Q 009310 422 ---------------------SSGRP--LPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 422 ---------------------~~~~~--~~~~~~~A~~qg~~aa~~i~~ 447 (538)
..+++ .++++..|.+||+++|.||.+
T Consensus 383 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 383 IEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred ccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 12233 368899999999999999974
No 30
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.3e-35 Score=293.43 Aligned_cols=289 Identities=20% Similarity=0.188 Sum_probs=211.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchh---hhhcCC---CCCccccccHHHHhccCCcE
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY---ELLSGE---VDAWEIAPRFADLLANTGVQ 153 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~---~~~~g~---~~~~~~~~~~~~~~~~~~v~ 153 (538)
+||+|||||+|||+||..|++ .|++|+|||+++. ....... ....+. ....++...+.+.+++.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~ 73 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR------ANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAE 73 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH------CCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCe
Confidence 589999999999999999998 6789999998762 1111000 001111 22234556677777788999
Q ss_pred EEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcC---CCChHHHHHHHHH
Q 009310 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP---FSTLEDACRVDRK 230 (538)
Q Consensus 154 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~---~~~~~d~~~~~~~ 230 (538)
++.++|+++++..+. ..+.++++..+.||+||+|||+.|+.|.+||..++... .....+ ..
T Consensus 74 ~~~~~v~~v~~~~~~-----------~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~-----~~ 137 (300)
T TIGR01292 74 IIYEEVIKVDLSDRP-----------FKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD-----GP 137 (300)
T ss_pred EEEEEEEEEEecCCe-----------eEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC-----hh
Confidence 988999999876431 24666677789999999999999999999986432110 010000 00
Q ss_pred HHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhC-CCEEEcCc
Q 009310 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR-KVQLVLGY 309 (538)
Q Consensus 231 l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~~ 309 (538)
. ..+++|+|||+|++|+|+|.+|++.+.+ |+++++.+.+. ....+.+.++++ ||++++++
T Consensus 138 ~----------~~~~~v~ViG~G~~~~e~a~~l~~~~~~---V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~ 198 (300)
T TIGR01292 138 F----------FKNKEVAVVGGGDSAIEEALYLTRIAKK---VTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNS 198 (300)
T ss_pred h----------cCCCEEEEECCChHHHHHHHHHHhhcCE---EEEEEeCcccC------cCHHHHHHHHhCCCeEEEecc
Confidence 0 1157999999999999999999887655 99999977542 234456777777 99999999
Q ss_pred eeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCC
Q 009310 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389 (538)
Q Consensus 310 ~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~ 389 (538)
.++++..++.. ..+++. +. ..++++++++|+||+|+|++|+.+++... +.
T Consensus 199 ~v~~i~~~~~~---------------------~~v~~~--~~-~~g~~~~i~~D~vi~a~G~~~~~~~l~~~------~~ 248 (300)
T TIGR01292 199 TVKEIVGDNKV---------------------EGVKIK--NT-VTGEEEELKVDGVFIAIGHEPNTELLKGL------LE 248 (300)
T ss_pred EEEEEEccCcE---------------------EEEEEE--ec-CCCceEEEEccEEEEeeCCCCChHHHHHh------he
Confidence 99999864311 123332 11 11245789999999999999998777542 45
Q ss_pred cCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 009310 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (538)
Q Consensus 390 l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~ 448 (538)
++++|++.||+++++ ++||||++|||+.. .++.+..|+.||+.+|.+|.+.
T Consensus 249 ~~~~g~i~v~~~~~t-~~~~vya~GD~~~~-------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 249 LDEGGYIVTDEGMRT-SVPGVFAAGDVRDK-------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred ecCCCcEEECCCCcc-CCCCEEEeecccCc-------chhhhhhhhhhHHHHHHHHHhh
Confidence 677899999999998 99999999999983 1578899999999999999864
No 31
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.6e-34 Score=306.80 Aligned_cols=300 Identities=22% Similarity=0.266 Sum_probs=211.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc----------hh-----hh-----hcCC----
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------LY-----EL-----LSGE---- 133 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~----------~~-----~~-----~~g~---- 133 (538)
..+|||||||||||++||..|++ .|++|+|||++. ++.... +. .. ..|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 75 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ------LGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSG 75 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 45899999999999999999998 688999999863 222211 10 00 0010
Q ss_pred --CCCccc-----------cccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEEEEe
Q 009310 134 --VDAWEI-----------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLS 198 (538)
Q Consensus 134 --~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lVlA 198 (538)
.+...+ ...+..++++.+++++.+.++.+++..-. -.... ..+.+.+| ..+.||+||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~-~~~~~-----~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 76 PALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFS-PMPGT-----VSVETETGENEMIIPENLLIA 149 (472)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCc-CCceE-----EEEEeCCCceEEEEcCEEEEe
Confidence 010000 11123445567999999999998765100 00000 14555555 57999999999
Q ss_pred CCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec
Q 009310 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (538)
Q Consensus 199 tG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~ 278 (538)
||+.|..+ ||.......+.+.+++..+... +++|+|||||++|+|+|..|++.+.+ |+++++
T Consensus 150 TGs~p~~~--p~~~~~~~~~~~~~~~~~~~~~-------------~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~ 211 (472)
T PRK05976 150 TGSRPVEL--PGLPFDGEYVISSDEALSLETL-------------PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEA 211 (472)
T ss_pred CCCCCCCC--CCCCCCCceEEcchHhhCcccc-------------CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEe
Confidence 99998654 3322111112344444433211 57999999999999999999987665 999999
Q ss_pred CCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcce
Q 009310 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (538)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~ 358 (538)
.+.+++.+++.+.+.+.+.|++.||++++++.|++++.... +++.+... .+++.+
T Consensus 212 ~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~----------------------~~~~~~~~---~~g~~~ 266 (472)
T PRK05976 212 ADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKD----------------------GGVLIVAE---HNGEEK 266 (472)
T ss_pred cCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC----------------------CCEEEEEE---eCCceE
Confidence 99999999999999999999999999999999999974110 22322111 111235
Q ss_pred EEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
++++|.||+|+|.+|+++.+... ..++.. .+|++.||+++|+ +.|+|||+|||+.. ++.+..|.+||
T Consensus 267 ~i~~D~vi~a~G~~p~~~~l~l~---~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~~--------~~~~~~A~~~g 333 (472)
T PRK05976 267 TLEADKVLVSVGRRPNTEGIGLE---NTDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIGE--------PQLAHVAMAEG 333 (472)
T ss_pred EEEeCEEEEeeCCccCCCCCCch---hcCcee-cCCEEEECCCccc-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 79999999999999998754321 123433 4689999999998 88999999999974 67899999999
Q ss_pred HHHHHHHH
Q 009310 439 DFAGWNLW 446 (538)
Q Consensus 439 ~~aa~~i~ 446 (538)
+.+|.||.
T Consensus 334 ~~aa~~i~ 341 (472)
T PRK05976 334 EMAAEHIA 341 (472)
T ss_pred HHHHHHHc
Confidence 99999986
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.8e-34 Score=303.48 Aligned_cols=293 Identities=21% Similarity=0.246 Sum_probs=207.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC---------CcccCcch-----hhhhc-----CCCCCccc
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPML-----YELLS-----GEVDAWEI 139 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~---------~~~~~p~~-----~~~~~-----g~~~~~~~ 139 (538)
++||+||||||||++||.+|++ .|++|+|||++. +.+.+.++ ...+. ...+ ...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~------~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~ 76 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ------LGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEV 76 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCc
Confidence 4899999999999999999998 678999999863 11111111 00000 0011 011
Q ss_pred cccH------------------HHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEEEEeC
Q 009310 140 APRF------------------ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSL 199 (538)
Q Consensus 140 ~~~~------------------~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lVlAt 199 (538)
..++ ...++..+++.+.+...-++.... .+...++ .++.||+|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v-------------~v~~~~g~~~~~~~d~lViAT 143 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTL-------------EVDLNDGGTETVTFDNAIIAT 143 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEE-------------EEEecCCCeeEEEcCEEEEeC
Confidence 1111 112223467777665544432211 2333343 479999999999
Q ss_pred CCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 200 G~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
|+.|+.| ||.+.. ..+.+.++...... .+++|+|||+|++|+|+|..+++++.+ |+++++.
T Consensus 144 Gs~p~~~--pg~~~~-~~v~~~~~~~~~~~-------------~~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~ 204 (466)
T PRK07818 144 GSSTRLL--PGTSLS-ENVVTYEEQILSRE-------------LPKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFL 204 (466)
T ss_pred CCCCCCC--CCCCCC-CcEEchHHHhcccc-------------CCCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecC
Confidence 9998764 564211 11223333211111 167999999999999999999988766 9999999
Q ss_pred CccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceE
Q 009310 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359 (538)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~ 359 (538)
+++++..+++....+.+.|+++||++++++.|++++.++ +.+.+.+.. .+++.++
T Consensus 205 ~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-----------------------~~~~v~~~~--~~g~~~~ 259 (466)
T PRK07818 205 DRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-----------------------SKVTVTVSK--KDGKAQE 259 (466)
T ss_pred CCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-----------------------CeEEEEEEe--cCCCeEE
Confidence 999999999999999999999999999999999998643 333333211 0112357
Q ss_pred EeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHH
Q 009310 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439 (538)
Q Consensus 360 l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~ 439 (538)
+++|.||+|+|.+|+++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +++++.|..||+
T Consensus 260 i~~D~vi~a~G~~pn~~~l~l~---~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~--------~~l~~~A~~~g~ 327 (466)
T PRK07818 260 LEADKVLQAIGFAPRVEGYGLE---KTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAK--------LQLAHVAEAQGV 327 (466)
T ss_pred EEeCEEEECcCcccCCCCCCch---hcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCC--------cccHhHHHHHHH
Confidence 9999999999999998764211 33677888899999999999 99999999999975 679999999999
Q ss_pred HHHHHHHH
Q 009310 440 FAGWNLWA 447 (538)
Q Consensus 440 ~aa~~i~~ 447 (538)
.+|.||..
T Consensus 328 ~aa~~i~g 335 (466)
T PRK07818 328 VAAETIAG 335 (466)
T ss_pred HHHHHHcC
Confidence 99999974
No 33
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.4e-34 Score=311.27 Aligned_cols=289 Identities=21% Similarity=0.318 Sum_probs=214.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC-------c---chhh-----h-----h-cCC---
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLYE-----L-----L-SGE--- 133 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-------p---~~~~-----~-----~-~g~--- 133 (538)
..+|||||||||||++||..|++ .|.+|+|||++. ++.. | ++.. . . .|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~------~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 169 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE------QGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT 169 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC
Confidence 35899999999999999999999 677999999873 2221 1 1000 0 0 011
Q ss_pred ---CCCccccc------------cHHHHhccC-CcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEE
Q 009310 134 ---VDAWEIAP------------RFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195 (538)
Q Consensus 134 ---~~~~~~~~------------~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~l 195 (538)
.....+.. .+...+... ++++++++++.++.... .+.+.++ ..+.||+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~~d~l 236 (561)
T PRK13748 170 VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTL-------------IVRLNDGGERVVAFDRC 236 (561)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEE-------------EEEeCCCceEEEEcCEE
Confidence 01111111 022233444 79999998888765432 3555554 36999999
Q ss_pred EEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEE
Q 009310 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQA 275 (538)
Q Consensus 196 VlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtl 275 (538)
|||||+.|..|++||..+.. +.+..+...... .+++|+|||+|++|+|+|..+.+++.+ |++
T Consensus 237 viAtGs~p~~p~i~g~~~~~--~~~~~~~~~~~~-------------~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtl 298 (561)
T PRK13748 237 LIATGASPAVPPIPGLKETP--YWTSTEALVSDT-------------IPERLAVIGSSVVALELAQAFARLGSK---VTI 298 (561)
T ss_pred EEcCCCCCCCCCCCCCCccc--eEccHHHhhccc-------------CCCeEEEECCCHHHHHHHHHHHHcCCE---EEE
Confidence 99999999999999975421 222222221111 157999999999999999999988766 999
Q ss_pred EecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCC
Q 009310 276 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (538)
Q Consensus 276 v~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 355 (538)
+++. .+++.+++++.+.+.+.|++.||++++++.+++++.++ +.+.+..
T Consensus 299 i~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-----------------------~~~~v~~------- 347 (561)
T PRK13748 299 LARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-----------------------GEFVLTT------- 347 (561)
T ss_pred EecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-----------------------CEEEEEe-------
Confidence 9984 56777889999999999999999999999999997643 3344432
Q ss_pred cceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHH
Q 009310 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435 (538)
Q Consensus 356 ~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~ 435 (538)
++.++++|.||+|+|.+||++++... ..+++++++|+|.||+++|+ +.|||||+|||+.. +..+..|.
T Consensus 348 ~~~~i~~D~vi~a~G~~pn~~~l~l~---~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~ 415 (561)
T PRK13748 348 GHGELRADKLLVATGRAPNTRSLALD---AAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ--------PQFVYVAA 415 (561)
T ss_pred cCCeEEeCEEEEccCCCcCCCCcCch---hcCceECCCCCEeECCCccc-CCCCEEEeeecCCC--------ccchhHHH
Confidence 22369999999999999998765321 23678888999999999999 99999999999986 67888999
Q ss_pred HHHHHHHHHHHH
Q 009310 436 QQADFAGWNLWA 447 (538)
Q Consensus 436 ~qg~~aa~~i~~ 447 (538)
.||+.+|.||..
T Consensus 416 ~~g~~aa~~i~g 427 (561)
T PRK13748 416 AAGTRAAINMTG 427 (561)
T ss_pred HHHHHHHHHHcC
Confidence 999999999973
No 34
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.9e-34 Score=302.93 Aligned_cols=289 Identities=24% Similarity=0.309 Sum_probs=215.8
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc----------h-----h----hhhcCCCCCcccc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------L-----Y----ELLSGEVDAWEIA 140 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~----------~-----~----~~~~g~~~~~~~~ 140 (538)
+||+||||||||++||..|++ .|++|+|||+ +.++.... + . ......++.....
T Consensus 2 yDvvVIG~G~aGl~aA~~la~------~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~ 74 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQ------LGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVS 74 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh------CCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCc
Confidence 799999999999999999998 6889999999 44332210 0 0 0000011111111
Q ss_pred cc------------------HHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc-eEEEeeEEEEeCCC
Q 009310 141 PR------------------FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (538)
Q Consensus 141 ~~------------------~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~yD~lVlAtG~ 201 (538)
.+ +..+++..+++++.+++..++.... .+...++ ..+.||+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~d~lVlAtG~ 141 (461)
T TIGR01350 75 VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTV-------------LVTGENGEETLTAKNIIIATGS 141 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCcEEEEeCEEEEcCCC
Confidence 11 1233445689999998877764332 3444443 47999999999999
Q ss_pred CCCCCCCC-CccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 202 EPKLDVVP-GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 202 ~~~~p~ip-G~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+.|++| +.... .+.+.++...+... +++|+|||+|.+|+|+|..+.+.+.+ |+++++.+
T Consensus 142 ~p~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~ 203 (461)
T TIGR01350 142 RPRSLPGPFDFDGE--VVITSTGALNLKEV-------------PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLD 203 (461)
T ss_pred CCCCCCCCCCCCCc--eEEcchHHhccccC-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCC
Confidence 99888776 32211 23444554433221 67999999999999999999887665 99999999
Q ss_pred ccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEE
Q 009310 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (538)
Q Consensus 281 ~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l 360 (538)
.+++.+++++.+.+.+.|++.||++++++.|.+++.++ +.+.+... .+ +.+++
T Consensus 204 ~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-----------------------~~v~v~~~---~g-~~~~i 256 (461)
T TIGR01350 204 RILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-----------------------DQVVYENK---GG-ETETL 256 (461)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-----------------------CEEEEEEe---CC-cEEEE
Confidence 99999999999999999999999999999999997643 44555432 11 12579
Q ss_pred eccEEEEecCCCCCCCC--CCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 361 EADLVLWTVGSKPLLPH--VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 361 ~~D~vI~a~G~~p~~~~--l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
++|.+|+|+|.+|+.+. +. ..++.++.+|++.||+++|+ +.|+|||+|||+.. ++++..|..||
T Consensus 257 ~~D~vi~a~G~~p~~~~l~~~-----~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~--------~~~~~~A~~~g 322 (461)
T TIGR01350 257 TGEKVLVAVGRKPNTEGLGLE-----NLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGG--------PMLAHVASHEG 322 (461)
T ss_pred EeCEEEEecCCcccCCCCCcH-----hhCceECCCCcEeeCCCccc-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 99999999999999873 33 23577888999999999999 89999999999975 67899999999
Q ss_pred HHHHHHHHH
Q 009310 439 DFAGWNLWA 447 (538)
Q Consensus 439 ~~aa~~i~~ 447 (538)
+.+|.||..
T Consensus 323 ~~aa~~i~~ 331 (461)
T TIGR01350 323 IVAAENIAG 331 (461)
T ss_pred HHHHHHHcC
Confidence 999999974
No 35
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=4e-34 Score=302.95 Aligned_cols=293 Identities=18% Similarity=0.199 Sum_probs=214.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC--------CcccC----------cchh-----hhhc--CC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--------RFVFK----------PMLY-----ELLS--GE 133 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~--------~~~~~----------p~~~-----~~~~--g~ 133 (538)
.+|||||||||||+.||..+++ .|.+|+|||+.. .+... .++. .... ..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~------~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~ 75 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD------YGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRN 75 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhh
Confidence 3799999999999999999999 678999999731 11111 1111 0000 00
Q ss_pred --CCCcc-c------------------cccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEE
Q 009310 134 --VDAWE-I------------------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIV 190 (538)
Q Consensus 134 --~~~~~-~------------------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~ 190 (538)
..... . ...+...++..+++++.+...-+++... .+...++ ..+
T Consensus 76 ~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v-------------~v~~~~g~~~~~ 142 (484)
T TIGR01438 76 YGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRI-------------KATNKKGKEKIY 142 (484)
T ss_pred cCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEE-------------EEeccCCCceEE
Confidence 01001 1 1123344566789999998877765421 2332233 379
Q ss_pred EeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhc
Q 009310 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEK 270 (538)
Q Consensus 191 ~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~ 270 (538)
.||+||||||++|+.|++||..+.. .+.++...+... +++++|||+|++|+|+|..+++++.+
T Consensus 143 ~~d~lVIATGs~p~~p~ipG~~~~~---~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~G~~- 205 (484)
T TIGR01438 143 SAERFLIATGERPRYPGIPGAKELC---ITSDDLFSLPYC-------------PGKTLVVGASYVALECAGFLAGIGLD- 205 (484)
T ss_pred EeCEEEEecCCCCCCCCCCCcccee---ecHHHhhccccc-------------CCCEEEECCCHHHHHHHHHHHHhCCc-
Confidence 9999999999999999999975432 233444333211 57999999999999999999988776
Q ss_pred CcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecc
Q 009310 271 GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350 (538)
Q Consensus 271 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 350 (538)
|+++++ +.+++.+++++.+.+++.|+++||++++++.+.++...+ +.+.+.+.
T Consensus 206 --Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-----------------------~~~~v~~~- 258 (484)
T TIGR01438 206 --VTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-----------------------AKVKVTFT- 258 (484)
T ss_pred --EEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-----------------------CeEEEEEe-
Confidence 999998 578899999999999999999999999999999887643 33444332
Q ss_pred cccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCC-CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCc
Q 009310 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429 (538)
Q Consensus 351 ~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~-~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~ 429 (538)
.+.+++++++|.||+|+|++||++++... ..++++++ +|+|.||+++|+ +.|+|||+|||+.. .+.
T Consensus 259 --~~~~~~~i~~D~vl~a~G~~pn~~~l~l~---~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~-------~~~ 325 (484)
T TIGR01438 259 --DSTNGIEEEYDTVLLAIGRDACTRKLNLE---NVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED-------KQE 325 (484)
T ss_pred --cCCcceEEEeCEEEEEecCCcCCCcCCcc---cccceecCcCCeEecCCCccc-CCCCEEEEEEecCC-------Ccc
Confidence 11123579999999999999998875422 23677765 489999999998 99999999999963 156
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 009310 430 TAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 430 ~~~~A~~qg~~aa~~i~~ 447 (538)
.++.|.+||+.+|+||..
T Consensus 326 l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 326 LTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 788999999999999975
No 36
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.7e-34 Score=301.16 Aligned_cols=290 Identities=16% Similarity=0.248 Sum_probs=212.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC-------c---chh-----hhhc-----CCC---
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLY-----ELLS-----GEV--- 134 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-------p---~~~-----~~~~-----g~~--- 134 (538)
.++||+|||||+||+++|..|++ .|.+|+|||+++.++.. | ++. .... |..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~------~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 88 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE------HGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVA 88 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh------CCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCC
Confidence 45899999999999999999998 57799999997432211 1 100 0000 110
Q ss_pred ---CCcccc-------c-----cHHHHhccC-CcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEEE
Q 009310 135 ---DAWEIA-------P-----RFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLV 196 (538)
Q Consensus 135 ---~~~~~~-------~-----~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lV 196 (538)
+...+. . .+...++.. +++++.+...-++.... .|...++ .++.||+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v-------------~v~~~~g~~~~~~~d~lV 155 (479)
T PRK14727 89 PSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTL-------------VVRLHDGGERVLAADRCL 155 (479)
T ss_pred CccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEE-------------EEEeCCCceEEEEeCEEE
Confidence 000000 0 122233333 78999888766654321 3555555 369999999
Q ss_pred EeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEE
Q 009310 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276 (538)
Q Consensus 197 lAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv 276 (538)
||||+.|..|++||..+.. +.+..+..... ..+++|+|||+|++|+|+|..+.+.+.+ |+++
T Consensus 156 iATGs~p~~p~i~G~~~~~--~~~~~~~l~~~-------------~~~k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv 217 (479)
T PRK14727 156 IATGSTPTIPPIPGLMDTP--YWTSTEALFSD-------------ELPASLTVIGSSVVAAEIAQAYARLGSR---VTIL 217 (479)
T ss_pred EecCCCCCCCCCCCcCccc--eecchHHhccc-------------cCCCeEEEECCCHHHHHHHHHHHHcCCE---EEEE
Confidence 9999999999999974321 12222222111 0157999999999999999999887766 9999
Q ss_pred ecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCc
Q 009310 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356 (538)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 356 (538)
++ +.+++.+++.+.+.+.+.|++.||++++++.|++++.++ +.+.+.. +
T Consensus 218 ~~-~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-----------------------~~~~v~~-------~ 266 (479)
T PRK14727 218 AR-STLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDD-----------------------NGFVLTT-------G 266 (479)
T ss_pred Ec-CCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC-----------------------CEEEEEE-------c
Confidence 88 467888889999999999999999999999999997643 3444432 2
Q ss_pred ceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHH
Q 009310 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436 (538)
Q Consensus 357 g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~ 436 (538)
+.++++|.||+|+|.+||++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +..+..|..
T Consensus 267 ~g~i~aD~VlvA~G~~pn~~~l~l~---~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~ 334 (479)
T PRK14727 267 HGELRAEKLLISTGRHANTHDLNLE---AVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL--------PQFVYVAAA 334 (479)
T ss_pred CCeEEeCEEEEccCCCCCccCCCch---hhCceecCCCCEEECCCeec-CCCCEEEeeecCCc--------chhhhHHHH
Confidence 2358999999999999998765321 23677888999999999999 99999999999986 678889999
Q ss_pred HHHHHHHHHHH
Q 009310 437 QADFAGWNLWA 447 (538)
Q Consensus 437 qg~~aa~~i~~ 447 (538)
||+.+|.||..
T Consensus 335 ~G~~aa~~i~g 345 (479)
T PRK14727 335 AGSRAGINMTG 345 (479)
T ss_pred HHHHHHHHHcC
Confidence 99999999974
No 37
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.7e-34 Score=301.68 Aligned_cols=290 Identities=24% Similarity=0.320 Sum_probs=212.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc----------hh---------hhh-cC-----
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------LY---------ELL-SG----- 132 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~----------~~---------~~~-~g----- 132 (538)
+.+|||||||||||++||..|++ .|.+|+|||++ .++.... +. ... .|
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~ 74 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK------LGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADG 74 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH------CCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 34899999999999999999998 67899999994 3322211 10 000 01
Q ss_pred -CCCCccccccH------------HHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeC
Q 009310 133 -EVDAWEIAPRF------------ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199 (538)
Q Consensus 133 -~~~~~~~~~~~------------~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAt 199 (538)
..+..++.... ...+...+++++.+.+..++.. ++.+ ++..+.||+|||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---------------~v~v-~~~~~~~d~lIiAT 138 (460)
T PRK06292 75 PKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPN---------------TVEV-NGERIEAKNIVIAT 138 (460)
T ss_pred CccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCC---------------EEEE-CcEEEEeCEEEEeC
Confidence 11111111111 1223345788888776666432 2444 55689999999999
Q ss_pred CCCCCCCCCCCccc-cCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec
Q 009310 200 GAEPKLDVVPGAAE-FAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (538)
Q Consensus 200 G~~~~~p~ipG~~~-~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~ 278 (538)
|+. .|++||... ....+.+.++...+... +++|+|||+|++|+|+|..+.+++.+ |+++++
T Consensus 139 Gs~--~p~ipg~~~~~~~~~~~~~~~~~~~~~-------------~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~ 200 (460)
T PRK06292 139 GSR--VPPIPGVWLILGDRLLTSDDAFELDKL-------------PKSLAVIGGGVIGLELGQALSRLGVK---VTVFER 200 (460)
T ss_pred CCC--CCCCCCCcccCCCcEECchHHhCcccc-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEec
Confidence 998 556777532 11223344444433221 68999999999999999999887766 999999
Q ss_pred CCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcce
Q 009310 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (538)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~ 358 (538)
.+++++.+++++.+.+.+.|+++ |++++++.+.+++.+++ ..+++.. ..++++
T Consensus 201 ~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~----------------------~~v~~~~----~~~~~~ 253 (460)
T PRK06292 201 GDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD----------------------EKVEELE----KGGKTE 253 (460)
T ss_pred CCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC----------------------ceEEEEE----cCCceE
Confidence 99999988999999999999999 99999999999986431 1344432 112556
Q ss_pred EEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
++++|.||+++|.+|+++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++.+..|..||
T Consensus 254 ~i~~D~vi~a~G~~p~~~~l~l~---~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~--------~~~~~~A~~qg 321 (460)
T PRK06292 254 TIEADYVLVATGRRPNTDGLGLE---NTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK--------PPLLHEAADEG 321 (460)
T ss_pred EEEeCEEEEccCCccCCCCCCcH---hhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC--------ccchhHHHHHH
Confidence 89999999999999998864321 23677888999999999999 99999999999975 67889999999
Q ss_pred HHHHHHHHH
Q 009310 439 DFAGWNLWA 447 (538)
Q Consensus 439 ~~aa~~i~~ 447 (538)
+.+|.||..
T Consensus 322 ~~aa~~i~~ 330 (460)
T PRK06292 322 RIAAENAAG 330 (460)
T ss_pred HHHHHHhcC
Confidence 999999975
No 38
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.9e-34 Score=290.15 Aligned_cols=304 Identities=16% Similarity=0.130 Sum_probs=211.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC---cccCcchhhhhcC--CCCCccccccHHHHhccCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER---FVFKPMLYELLSG--EVDAWEIAPRFADLLANTG 151 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~---~~~~p~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 151 (538)
...+||+|||||||||+||..|++ .|+++++||..+. +.+.+..+.+... ......+...+.+....++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~------~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR------ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE 77 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH------CCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 456899999999999999999998 6789999986432 1111211111111 1122233444556666667
Q ss_pred cEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHH
Q 009310 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231 (538)
Q Consensus 152 v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l 231 (538)
.++..+.++.++...+. ++++.+.+ .+.||+||+|||+.|+.|++||.+.+... ............
T Consensus 78 ~~~~~~~v~~v~~~~~~-----------~~v~~~~~-~~~~d~vilAtG~~~~~~~i~g~~~~~~~--~v~~~~~~~~~~ 143 (321)
T PRK10262 78 TEIIFDHINKVDLQNRP-----------FRLTGDSG-EYTCDALIIATGASARYLGLPSEEAFKGR--GVSACATCDGFF 143 (321)
T ss_pred CEEEeeEEEEEEecCCe-----------EEEEecCC-EEEECEEEECCCCCCCCCCCCCHHHcCCC--cEEEeecCCHHH
Confidence 77777778778654431 13443333 68999999999999999999996432111 110000111110
Q ss_pred HHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 232 SELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 232 ~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
..+++|+|||+|.+|+|+|..|++.+.+ |+++++.+.+. ..+.+.+.+++.|++.||++++++.+
T Consensus 144 ----------~~g~~vvVvGgG~~g~e~A~~l~~~~~~---Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v 208 (321)
T PRK10262 144 ----------YRNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTL 208 (321)
T ss_pred ----------cCCCEEEEECCCHHHHHHHHHHHhhCCE---EEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEE
Confidence 0168999999999999999999988665 99999987652 34567788888999999999999999
Q ss_pred eEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcC
Q 009310 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391 (538)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~ 391 (538)
+++.+++... ..++++. ...+++.+++++|.|||++|.+|+.+++.. ++.+
T Consensus 209 ~~v~~~~~~~--------------------~~v~~~~--~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~------~l~~- 259 (321)
T PRK10262 209 EEVTGDQMGV--------------------TGVRLRD--TQNSDNIESLDVAGLFVAIGHSPNTAIFEG------QLEL- 259 (321)
T ss_pred EEEEcCCccE--------------------EEEEEEE--cCCCCeEEEEECCEEEEEeCCccChhHhhc------cccc-
Confidence 9998753110 2344431 111223468999999999999999887643 2444
Q ss_pred CCCCeeeCC-----CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 392 ARGQAETDE-----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 392 ~~G~i~vd~-----~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
++|+|.||+ ++++ +.|+|||+|||+... .++...|+.+|..||..|.+.+.+.
T Consensus 260 ~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~-------~~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 260 ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-------YRQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred cCCEEEECCCCccccccc-CCCCEEECeeccCCC-------cceEEEEehhHHHHHHHHHHHHHhc
Confidence 358899997 6677 999999999999641 3556669999999999999988653
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.5e-33 Score=298.00 Aligned_cols=289 Identities=18% Similarity=0.239 Sum_probs=212.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc----c--cCc---chhh----------hhcCC--------
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF----V--FKP---MLYE----------LLSGE-------- 133 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~----~--~~p---~~~~----------~~~g~-------- 133 (538)
+||||||||||++||..|++ .|.+|+|||++..- . ..| ++.. ...|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~------~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 75 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ------NGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSIS 75 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh------CCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence 89999999999999999998 67899999997521 0 011 1110 00011
Q ss_pred CCCcccc-----------ccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc-eEEEeeEEEEeCCC
Q 009310 134 VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (538)
Q Consensus 134 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~yD~lVlAtG~ 201 (538)
.+...+. .....+++..+++++.+++..++.... .+..+++ ..+.||+||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v-------------~v~~~~~~~~~~~d~lviATGs 142 (458)
T PRK06912 76 IDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRV-------------RVEYGDKEEVVDAEQFIIAAGS 142 (458)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEE-------------EEeeCCCcEEEECCEEEEeCCC
Confidence 0111111 112233455689999999887764432 3444444 47999999999999
Q ss_pred CCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 202 ~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
+|+.|++++.... .+.+.+++..+... +++++|||+|++|+|+|..+.+.+.+ |+++++.++
T Consensus 143 ~p~~~p~~~~~~~--~v~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ 204 (458)
T PRK06912 143 EPTELPFAPFDGK--WIINSKHAMSLPSI-------------PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQ 204 (458)
T ss_pred CCCCCCCCCCCCC--eEEcchHHhCcccc-------------CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCC
Confidence 9988877775321 12233444433222 57999999999999999999876655 999999999
Q ss_pred cCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEe
Q 009310 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (538)
Q Consensus 282 ~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~ 361 (538)
+++..++++.+.+.+.|++.||++++++.|++++.++ ..+.+.. +++.++++
T Consensus 205 ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-----------------------~~v~~~~-----~g~~~~i~ 256 (458)
T PRK06912 205 LLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYK-----------------------KQALFEY-----EGSIQEVN 256 (458)
T ss_pred cCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-----------------------CEEEEEE-----CCceEEEE
Confidence 9999899999999999999999999999999997643 3344431 11235799
Q ss_pred ccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHH
Q 009310 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (538)
Q Consensus 362 ~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~a 441 (538)
+|.||+|+|.+|+.+.+... ..++.++++| |.||+++|+ +.|+|||+|||+.. ++.+..|.+||+.+
T Consensus 257 ~D~vivA~G~~p~~~~l~l~---~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~--------~~la~~A~~~g~~a 323 (458)
T PRK06912 257 AEFVLVSVGRKPRVQQLNLE---KAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGG--------IQLAHVAFHEGTTA 323 (458)
T ss_pred eCEEEEecCCccCCCCCCch---hcCceecCCC-EEeCCCeec-CCCCEEEEeecCCC--------cccHHHHHHHHHHH
Confidence 99999999999998754211 2356667666 999999998 89999999999975 68899999999999
Q ss_pred HHHHHH
Q 009310 442 GWNLWA 447 (538)
Q Consensus 442 a~~i~~ 447 (538)
|.||..
T Consensus 324 a~~~~g 329 (458)
T PRK06912 324 ALHASG 329 (458)
T ss_pred HHHHcC
Confidence 999864
No 40
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=4.9e-33 Score=296.00 Aligned_cols=287 Identities=21% Similarity=0.294 Sum_probs=208.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC--------CcccC-------c---chhh-----hh-----
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--------RFVFK-------P---MLYE-----LL----- 130 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~--------~~~~~-------p---~~~~-----~~----- 130 (538)
.+||+||||||||++||..|++ .|.+|+|||++. .++.. | ++.. ..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~------~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA------HGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh------CCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 4899999999999999999998 678999999631 12221 1 1100 00
Q ss_pred -cC-----CCCCccccccHH-----------HHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcC---CceEE
Q 009310 131 -SG-----EVDAWEIAPRFA-----------DLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIV 190 (538)
Q Consensus 131 -~g-----~~~~~~~~~~~~-----------~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~ 190 (538)
.| ..+...+..... ..++..+++++.++....+.. +|.+. ++..+
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~---------------~v~v~~~~~~~~i 143 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEH---------------TVSYGDNSQEETI 143 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCC---------------EEEEeeCCCceEE
Confidence 01 111112211111 222335788888776654322 23322 23579
Q ss_pred EeeEEEEeCCCCCCCCC-CCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHh
Q 009310 191 EYDWLVLSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269 (538)
Q Consensus 191 ~yD~lVlAtG~~~~~p~-ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~ 269 (538)
.||+||||||+.|..|. +||..+.. .+.++...+... +++++|||+|++|+|+|..|++++.+
T Consensus 144 ~~d~lIIATGs~p~~p~~i~G~~~~~---~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~G~~ 207 (499)
T PTZ00052 144 TAKYILIATGGRPSIPEDVPGAKEYS---ITSDDIFSLSKD-------------PGKTLIVGASYIGLETAGFLNELGFD 207 (499)
T ss_pred ECCEEEEecCCCCCCCCCCCCcccee---ecHHHHhhhhcC-------------CCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 99999999999999884 89865432 234444332211 57999999999999999999988776
Q ss_pred cCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeec
Q 009310 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349 (538)
Q Consensus 270 ~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 349 (538)
|+++++ ..+++.+++...+.+.+.|++.||++++++.+.++...+ +.+.+.+.
T Consensus 208 ---Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-----------------------~~~~v~~~ 260 (499)
T PTZ00052 208 ---VTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-----------------------DKIKVLFS 260 (499)
T ss_pred ---EEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-----------------------CeEEEEEC
Confidence 999988 467788899999999999999999999999999887643 23334332
Q ss_pred ccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCc
Q 009310 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429 (538)
Q Consensus 350 ~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~ 429 (538)
+++++++|.||+++|.+||++++... ..+++++++|++.+++. ++ +.|+|||+|||+.. .+.
T Consensus 261 ------~g~~i~~D~vl~a~G~~pn~~~l~l~---~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~-------~~~ 322 (499)
T PTZ00052 261 ------DGTTELFDTVLYATGRKPDIKGLNLN---AIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG-------RPE 322 (499)
T ss_pred ------CCCEEEcCEEEEeeCCCCCccccCch---hcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC-------Ccc
Confidence 56679999999999999998876421 23678888999877766 87 89999999999962 157
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 009310 430 TAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 430 ~~~~A~~qg~~aa~~i~~ 447 (538)
.+..|++||+.+|+||..
T Consensus 323 l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 323 LTPVAIKAGILLARRLFK 340 (499)
T ss_pred cHHHHHHHHHHHHHHHhC
Confidence 889999999999999974
No 41
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=5e-33 Score=293.00 Aligned_cols=286 Identities=20% Similarity=0.265 Sum_probs=208.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC---------CcccCcchhh--h---h-----cCC------
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLYE--L---L-----SGE------ 133 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~---------~~~~~p~~~~--~---~-----~g~------ 133 (538)
++||||||+||||+.||..+ .|.+|+|||++. +.+.+.++.. . . .|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--------~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~ 73 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--------ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDS 73 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--------CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCc
Confidence 48999999999999986443 467999999864 1111111110 0 0 010
Q ss_pred CCCcccc--------ccH----HHH-h--ccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEe
Q 009310 134 VDAWEIA--------PRF----ADL-L--ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198 (538)
Q Consensus 134 ~~~~~~~--------~~~----~~~-~--~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlA 198 (538)
.+...+. ..+ ..+ . +..+++++.+...-.+ .++|.+.++..+.||+||||
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~---------------~~~V~~~~g~~~~~d~lIiA 138 (452)
T TIGR03452 74 VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG---------------PRTLRTGDGEEITGDQIVIA 138 (452)
T ss_pred cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec---------------CCEEEECCCcEEEeCEEEEE
Confidence 0100000 000 011 1 1257777776554442 12577767778999999999
Q ss_pred CCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec
Q 009310 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (538)
Q Consensus 199 tG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~ 278 (538)
||+.|..|++++. ....+.+.+++..+.+. +++++|||+|++|+|+|..+.+.+.+ |+++++
T Consensus 139 TGs~p~~p~~~~~--~~~~~~~~~~~~~l~~~-------------~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~ 200 (452)
T TIGR03452 139 AGSRPYIPPAIAD--SGVRYHTNEDIMRLPEL-------------PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNR 200 (452)
T ss_pred ECCCCCCCCCCCC--CCCEEEcHHHHHhhhhc-------------CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEc
Confidence 9999988764432 12235677777665443 67999999999999999999887765 999999
Q ss_pred CCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcce
Q 009310 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (538)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~ 358 (538)
.+.+++.++++..+.+.+.+ +.||+++++..|++++.++ +++.+.+. +++
T Consensus 201 ~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-----------------------~~v~v~~~------~g~ 250 (452)
T TIGR03452 201 STKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG-----------------------DGVTLTLD------DGS 250 (452)
T ss_pred cCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-----------------------CeEEEEEc------CCC
Confidence 99998888888888777655 4689999999999998643 34555432 456
Q ss_pred EEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHH
Q 009310 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg 438 (538)
++++|.|++++|.+|+++++... ..|++++++|+|.||+++|| +.|+|||+|||+.. ++.++.|.+||
T Consensus 251 ~i~~D~vl~a~G~~pn~~~l~~~---~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A~~~g 318 (452)
T TIGR03452 251 TVTADVLLVATGRVPNGDLLDAE---AAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSP--------YQLKHVANAEA 318 (452)
T ss_pred EEEcCEEEEeeccCcCCCCcCch---hcCeeECCCCcEeeCCCccc-CCCCEEEeecccCc--------ccChhHHHHHH
Confidence 89999999999999998876432 23678888999999999998 99999999999985 67889999999
Q ss_pred HHHHHHHHH
Q 009310 439 DFAGWNLWA 447 (538)
Q Consensus 439 ~~aa~~i~~ 447 (538)
+++|+||..
T Consensus 319 ~~~a~ni~~ 327 (452)
T TIGR03452 319 RVVKHNLLH 327 (452)
T ss_pred HHHHHHhcC
Confidence 999999974
No 42
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=280.95 Aligned_cols=317 Identities=22% Similarity=0.314 Sum_probs=255.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc-chhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p-~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
.+.++|||||++|..|+.++++.++ -.+++++-++.+++|-+ .++..+.- ..........++++..+++++.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~----~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF----TERIALVKREYLLPYDRARLSKFLLT--VGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC----CcceEEEeccccCcccchhcccceee--ccccccccChhhHhhcCceEEEc
Confidence 4799999999999999999999763 45899999888888754 34433221 12333344556788889999985
Q ss_pred -eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCcc-ccCcCCCChHHHHHHHHHHHHHH
Q 009310 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~-~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
.|+.+|...+ ++.+.+|+.+.|++|+||||+.++.+++||.. ++...++..+|+..+...+..
T Consensus 148 t~v~~~D~~~K-------------~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~-- 212 (478)
T KOG1336|consen 148 TSVVKADLASK-------------TLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQL-- 212 (478)
T ss_pred ceeEEeecccc-------------EEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhcc--
Confidence 9999988876 69999999999999999999999999999984 566778888888776655432
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC-CCChhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
..+|+++|+|..|+|+|.+|.....+ ||+|++.+.+++ .+.+.+.+.+++++++.||++++++.+.++
T Consensus 213 --------~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l 281 (478)
T KOG1336|consen 213 --------GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSL 281 (478)
T ss_pred --------CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeec
Confidence 46899999999999999999887554 999999999988 468999999999999999999999999999
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G 394 (538)
+.+..+ +...+.+. +++++++|+||+++|.+|++++++. +..++..|
T Consensus 282 ~~~~~G---------------------ev~~V~l~------dg~~l~adlvv~GiG~~p~t~~~~~------g~~~~~~G 328 (478)
T KOG1336|consen 282 EGNSDG---------------------EVSEVKLK------DGKTLEADLVVVGIGIKPNTSFLEK------GILLDSKG 328 (478)
T ss_pred ccCCCC---------------------cEEEEEec------cCCEeccCeEEEeeccccccccccc------cceecccC
Confidence 987643 22333332 8999999999999999999999874 46688999
Q ss_pred CeeeCCCcccCCCCCEEEccccccccCCC--CCCCCccHHHHHHHHHHHHHHHHHHHCCC-CCCCceecC
Q 009310 395 QAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQN 461 (538)
Q Consensus 395 ~i~vd~~l~~~~~~~VfaiGD~~~~~~~~--~~~~~~~~~~A~~qg~~aa~~i~~~l~~~-~~~p~~~~~ 461 (538)
.|.||+.||+ +.|||||+||++..+-.. .......++.|+.+|+.+...|...-... +..||+|+.
T Consensus 329 ~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~~~~lPyf~t~ 397 (478)
T KOG1336|consen 329 GIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDAYDYLPYFYTR 397 (478)
T ss_pred CEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcccccccchHHHH
Confidence 9999999999 799999999999987652 11125788889999998887776543332 356887764
No 43
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.5e-33 Score=293.48 Aligned_cols=296 Identities=18% Similarity=0.226 Sum_probs=212.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcC------CCCcccC-------cc---hh--hh---h------c
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ------SERFVFK-------PM---LY--EL---L------S 131 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~------~~~~~~~-------p~---~~--~~---~------~ 131 (538)
.+||+||||||||++||.++++ .|.+|+|||+ ...+... |. +. .. . .
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~------~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQ------LGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHh------CCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 5899999999999999999999 6779999998 1211111 11 10 00 0 0
Q ss_pred CCCCCccc-------c-----------ccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcC--CceEEE
Q 009310 132 GEVDAWEI-------A-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE--SGLIVE 191 (538)
Q Consensus 132 g~~~~~~~-------~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~--~g~~~~ 191 (538)
| .+.... . ..+..+++..+++++.+++..++.... .++|.+. ++..+.
T Consensus 78 G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-----------~~~v~v~~~~~~~~~ 145 (475)
T PRK06327 78 G-IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDA-----------GYEIKVTGEDETVIT 145 (475)
T ss_pred C-ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCC-----------CCEEEEecCCCeEEE
Confidence 1 111111 0 122334455689999998887764322 1244442 345899
Q ss_pred eeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcC
Q 009310 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271 (538)
Q Consensus 192 yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~ 271 (538)
||+||||||+.|+.++..+... ..+.+.++...+... +++|+|||+|++|+|+|..+.+++.+
T Consensus 146 ~d~lViATGs~p~~~p~~~~~~--~~~~~~~~~~~~~~~-------------~~~vvVvGgG~~g~E~A~~l~~~g~~-- 208 (475)
T PRK06327 146 AKHVIIATGSEPRHLPGVPFDN--KIILDNTGALNFTEV-------------PKKLAVIGAGVIGLELGSVWRRLGAE-- 208 (475)
T ss_pred eCEEEEeCCCCCCCCCCCCCCC--ceEECcHHHhccccc-------------CCeEEEECCCHHHHHHHHHHHHcCCe--
Confidence 9999999999986543222111 112233333322111 67999999999999999999887665
Q ss_pred cEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeeccc
Q 009310 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 351 (538)
Q Consensus 272 ~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 351 (538)
|+++++.+.+++..++++.+.+.+.|+++||++++++.|++++.++ +++.+.+.+
T Consensus 209 -Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-----------------------~~v~v~~~~- 263 (475)
T PRK06327 209 -VTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-----------------------KGVSVAYTD- 263 (475)
T ss_pred -EEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-----------------------CEEEEEEEe-
Confidence 9999999999998889999999999999999999999999998754 344444321
Q ss_pred ccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccH
Q 009310 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431 (538)
Q Consensus 352 ~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~ 431 (538)
.+++.+++++|.||+++|.+|+++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +..+
T Consensus 264 -~~g~~~~i~~D~vl~a~G~~p~~~~l~~~---~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~--------~~~~ 330 (475)
T PRK06327 264 -ADGEAQTLEVDKLIVSIGRVPNTDGLGLE---AVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRG--------PMLA 330 (475)
T ss_pred -CCCceeEEEcCEEEEccCCccCCCCCCcH---hhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCC--------cchH
Confidence 11122579999999999999998754321 23677888999999999998 89999999999975 6789
Q ss_pred HHHHHHHHHHHHHHHH
Q 009310 432 QVAFQQADFAGWNLWA 447 (538)
Q Consensus 432 ~~A~~qg~~aa~~i~~ 447 (538)
..|..||+.+|.||..
T Consensus 331 ~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 331 HKAEEEGVAVAERIAG 346 (475)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999974
No 44
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-32 Score=296.45 Aligned_cols=211 Identities=18% Similarity=0.184 Sum_probs=163.8
Q ss_pred CceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHH
Q 009310 186 SGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSE 265 (538)
Q Consensus 186 ~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~ 265 (538)
++.++.||+||||||+.|..|++++... ..+.+.+++..+... +++|+|||+|++|+|+|..+.+
T Consensus 269 ~g~~i~ad~lIIATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~l-------------pk~VvIVGgG~iGvE~A~~l~~ 333 (659)
T PTZ00153 269 SGKEFKVKNIIIATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEGL-------------QNYMGIVGMGIIGLEFMDIYTA 333 (659)
T ss_pred CCEEEECCEEEEcCCCCCCCCCCCCCCC--CcEEehHHhhhhhhc-------------CCceEEECCCHHHHHHHHHHHh
Confidence 5668999999999999999887666432 123455666554332 6799999999999999999988
Q ss_pred HHHhcCcEEEEecCCccCCCCChhhHHHHHHHH-HhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCce
Q 009310 266 RLEEKGIVQAINVETTICPTGTPGNREAALKVL-SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344 (538)
Q Consensus 266 ~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l-~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 344 (538)
++.+ |+++++.+++++.+++++.+.+.+.+ +++||++++++.|++++.+++. ..+
T Consensus 334 ~G~e---VTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~---------------------~~v 389 (659)
T PTZ00153 334 LGSE---VVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGN---------------------QPV 389 (659)
T ss_pred CCCe---EEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc---------------------eEE
Confidence 8766 99999999999999999999888875 6799999999999999864311 124
Q ss_pred EEeecccccCC---------cceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCC-----CCCE
Q 009310 345 ILELQPAIKGL---------ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG-----HPRI 410 (538)
Q Consensus 345 ~~~~~~~~~~~---------~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~-----~~~V 410 (538)
++.+.....+. +.+++++|.||||+|.+||++.+... ..++.++ +|+|.||++||+.. .|+|
T Consensus 390 ~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~---~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~I 465 (659)
T PTZ00153 390 IIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD---KLKIQMK-RGFVSVDEHLRVLREDQEVYDNI 465 (659)
T ss_pred EEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch---hcCCccc-CCEEeECCCCCcCCCCCCCCCCE
Confidence 44332110010 12479999999999999998876321 2256665 48999999999942 6999
Q ss_pred EEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 411 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 411 faiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
||+|||+.. ++.++.|.+||+.+++||..
T Consensus 466 YAiGDv~g~--------~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 466 FCIGDANGK--------QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred EEEEecCCC--------ccCHHHHHHHHHHHHHHHcC
Confidence 999999864 67899999999999999975
No 45
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.3e-33 Score=296.99 Aligned_cols=304 Identities=21% Similarity=0.144 Sum_probs=203.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||||||||++|..|++ .|++|+|||+++....... +.. .....+.++.....+.+...+++++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~------~G~~V~vie~~~~~GG~l~-~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~ 202 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK------AGHSVTVFEALHKPGGVVT-YGI-PEFRLPKEIVVTEIKTLKKLGVTFRM 202 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcEee-ecC-CCccCCHHHHHHHHHHHHhCCcEEEe
Confidence 345899999999999999999998 6889999999875432211 111 11111223333334455677899988
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC-CCCCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~-~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
+..... ++++++. ...||+||||||+ .|+.+++||.+.. .+.+..+...........+
T Consensus 203 ~~~v~~------------------~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~--gv~~~~~~l~~~~~~~~~~ 261 (449)
T TIGR01316 203 NFLVGK------------------TATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELC--GVYSANDFLTRANLMKAYE 261 (449)
T ss_pred CCccCC------------------cCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCC--CcEEHHHHHHHHhhccccc
Confidence 753211 2333333 3479999999998 6888999996411 1222233222111110000
Q ss_pred --HhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeE
Q 009310 236 --RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313 (538)
Q Consensus 236 --~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~ 313 (538)
........+++|+|||+|++|+|+|..+.+.+.+ |+++.+.+.. .++ ......+.+++.||++++++.+.+
T Consensus 262 ~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~---Vtlv~~~~~~--~~~--~~~~~~~~l~~~GV~~~~~~~~~~ 334 (449)
T TIGR01316 262 FPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE---VHCLYRRTRE--DMT--ARVEEIAHAEEEGVKFHFLCQPVE 334 (449)
T ss_pred ccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE---EEEEeecCcc--cCC--CCHHHHHHHHhCCCEEEeccCcEE
Confidence 0000112368999999999999999999988776 9999987642 111 123334668889999999999999
Q ss_pred EeccccccccccCCCCCcccccccccCCCceEEee-c---ccc--------cCCcceEEeccEEEEecCCCCCCCCCCCC
Q 009310 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-Q---PAI--------KGLESQIFEADLVLWTVGSKPLLPHVEPP 381 (538)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~---~~~--------~~~~g~~l~~D~vI~a~G~~p~~~~l~~~ 381 (538)
+..+++... .++++.. . ... ..++.+++++|+||+++|+.|+..++...
T Consensus 335 i~~~~~g~v-------------------~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~ 395 (449)
T TIGR01316 335 IIGDEEGNV-------------------RAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETT 395 (449)
T ss_pred EEEcCCCeE-------------------EEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhcc
Confidence 975321100 1222220 0 000 01234579999999999999998766533
Q ss_pred CCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 382 ~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
+++++++|+|.||++++| +.|+|||+|||+.. +.++..|+.||+.+|.+|...|
T Consensus 396 -----gl~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g--------~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 396 -----RLKTSERGTIVVDEDQRT-SIPGVFAGGDIILG--------AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred -----CcccCCCCeEEeCCCCcc-CCCCEEEecCCCCC--------cHHHHHHHHHHHHHHHHHHhhC
Confidence 577888899999999998 89999999999975 6788999999999999998753
No 46
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=4.2e-33 Score=294.59 Aligned_cols=353 Identities=18% Similarity=0.106 Sum_probs=229.8
Q ss_pred ccCCcc--cccccc---cccccchhHHHH--HHHHhhhcccccccccccccccCcCCCCCCCCCCeEEEECCcHHHHHHH
Q 009310 23 SKLFPF--SSKSYL---SFKTCRKNRFIS--FAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTA 95 (538)
Q Consensus 23 ~~~~~~--~~~~~~---~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VVIIGgG~AGl~aA 95 (538)
.+|||. +..|.. |+..|.|..... .+.|..++....+....... ...+....++|+|||||||||++|
T Consensus 82 ~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~VvIIGgGpaGl~aA 156 (457)
T PRK11749 82 TNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVL-----FKRAPKTGKKVAVIGAGPAGLTAA 156 (457)
T ss_pred hCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCC-----CCCCccCCCcEEEECCCHHHHHHH
Confidence 356663 334432 555566543233 56788877766554332110 012234568999999999999999
Q ss_pred HHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCce
Q 009310 96 LRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMA 175 (538)
Q Consensus 96 ~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~ 175 (538)
..|++ .|++|+|||+++.+..... .. ......+.++.....+.+...+++++.+.....
T Consensus 157 ~~l~~------~g~~V~lie~~~~~gG~l~-~g-ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~------------- 215 (457)
T PRK11749 157 HRLAR------KGYDVTIFEARDKAGGLLR-YG-IPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR------------- 215 (457)
T ss_pred HHHHh------CCCeEEEEccCCCCCcEee-cc-CCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-------------
Confidence 99998 6889999999876432211 01 111112234444455666777899887754311
Q ss_pred eecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCCh
Q 009310 176 CTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGY 254 (538)
Q Consensus 176 ~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~ 254 (538)
.+++++. .+.||+||+|||+. +..+++||.+.. .+.+..+......... .......+++|+|||+|+
T Consensus 216 -----~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~--gv~~~~~~l~~~~~~~----~~~~~~~g~~VvViGgG~ 283 (457)
T PRK11749 216 -----DITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLG--GVYSAVDFLTRVNQAV----ADYDLPVGKRVVVIGGGN 283 (457)
T ss_pred -----ccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCC--CcEEHHHHHHHHhhcc----ccccCCCCCeEEEECCCH
Confidence 1233333 37899999999996 777788886321 1222222221111000 000111368999999999
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEecCCcc-CCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCccc
Q 009310 255 SGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 333 (538)
Q Consensus 255 ~g~E~A~~l~~~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~ 333 (538)
+|+|+|..+.+.+.+ .|+++.+.+.. ++.. ....+.+++.||++++++.+.++..+++..
T Consensus 284 ~g~e~A~~l~~~G~~--~Vtlv~~~~~~~~~~~-----~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~------------ 344 (457)
T PRK11749 284 TAMDAARTAKRLGAE--SVTIVYRRGREEMPAS-----EEEVEHAKEEGVEFEWLAAPVEILGDEGRV------------ 344 (457)
T ss_pred HHHHHHHHHHHcCCC--eEEEeeecCcccCCCC-----HHHHHHHHHCCCEEEecCCcEEEEecCCce------------
Confidence 999999999877652 29999886542 2221 223567888999999999999997654210
Q ss_pred ccccccCCCceEEeec-----cc------ccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCC-C
Q 009310 334 NIAADKNSDKYILELQ-----PA------IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE-T 401 (538)
Q Consensus 334 ~~~~~~~~~~v~~~~~-----~~------~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~-~ 401 (538)
.++++... +. ...++++++++|+||+++|++|+..++.. ..++.++++|+|.||+ +
T Consensus 345 --------~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~----~~gl~~~~~g~i~vd~~~ 412 (457)
T PRK11749 345 --------TGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILST----TPGLELNRWGTIIADDET 412 (457)
T ss_pred --------EEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhcc----ccCccCCCCCCEEeCCCC
Confidence 12333210 00 01125568999999999999999766543 2257788899999998 7
Q ss_pred cccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 009310 402 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (538)
Q Consensus 402 l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~ 453 (538)
+++ +.|+|||+|||+.. ++++..|+.||+.+|.+|.+.+.++.
T Consensus 413 ~~T-s~~~VfA~GD~~~~--------~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 413 GRT-SLPGVFAGGDIVTG--------AATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred Ccc-CCCCEEEeCCcCCC--------chHHHHHHHHHHHHHHHHHHHHhccc
Confidence 887 89999999999964 57889999999999999999998753
No 47
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.8e-33 Score=296.48 Aligned_cols=311 Identities=18% Similarity=0.105 Sum_probs=206.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEE
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (538)
....++|+|||||||||+||.+|++ .|++|+|||+.+....... +.........+++.....++++..+++++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~l~-~gip~~~l~~~~~~~~~~~~~~~~gv~i~ 209 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAK------MGYDVTIFEALHEPGGVLV-YGIPEFRLPKETVVKKEIENIKKLGVKIE 209 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCCCCeee-ecCCCccCCccHHHHHHHHHHHHcCCEEE
Confidence 3456899999999999999999999 6889999999775432211 11001111112244444556677889988
Q ss_pred EeeEEEEcCCCCcCcCCCceeecccEEEcCCc-eEEEeeEEEEeCCC-CCCCCCCCCccccCcCCCChHHHHHHHHHHHH
Q 009310 156 KDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE 233 (538)
Q Consensus 156 ~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~yD~lVlAtG~-~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~ 233 (538)
.+....- .+..++. ..+.||+||||||+ .|+.+++||.+.. .+.+..+..........
T Consensus 210 ~~~~v~~------------------~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~ 269 (464)
T PRK12831 210 TNVVVGK------------------TVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLN--GVFSANEFLTRVNLMKA 269 (464)
T ss_pred cCCEECC------------------cCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCc--CcEEHHHHHHHHHhccc
Confidence 7753311 1223332 23579999999999 5888999996421 12233333322111100
Q ss_pred HHH-hccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 234 LER-RNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 234 ~~~-~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
... .......+++|+|||||++|+|+|..+.+++.+ |+++.+... ..++.... . .+.+++.||++++++.+.
T Consensus 270 ~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~---Vtlv~r~~~--~~m~a~~~-e-~~~a~~eGV~i~~~~~~~ 342 (464)
T PRK12831 270 YKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE---VHIVYRRSE--EELPARVE-E-VHHAKEEGVIFDLLTNPV 342 (464)
T ss_pred ccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE---EEEEeecCc--ccCCCCHH-H-HHHHHHcCCEEEecccce
Confidence 000 000112378999999999999999999988876 999988653 12222221 1 234677899999999999
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEe---ecccc-c--------CCcceEEeccEEEEecCCCCCCCCCCC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQPAI-K--------GLESQIFEADLVLWTVGSKPLLPHVEP 380 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~-~--------~~~g~~l~~D~vI~a~G~~p~~~~l~~ 380 (538)
++..+++... .++.+. +...+ . .++..++++|+||+++|+.|++.++..
T Consensus 343 ~i~~~~~g~v-------------------~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~ 403 (464)
T PRK12831 343 EILGDENGWV-------------------KGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISST 403 (464)
T ss_pred EEEecCCCeE-------------------EEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcc
Confidence 9875321100 122221 10000 0 123347999999999999999877653
Q ss_pred CCCccCCCCcCCCCCeeeCCC-cccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 381 PNNRLHDLPLNARGQAETDET-LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 381 ~~~~~~~~~l~~~G~i~vd~~-l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
. .++.++++|+|.||++ ++| +.|+|||+|||+.. +.++..|+.+|+.+|.+|...+.++
T Consensus 404 ~----~gl~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g--------~~~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 404 T----KGLKINKRGCIVADEETGLT-SKEGVFAGGDAVTG--------AATVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred c----CCceECCCCcEEECCCCCcc-CCCCEEEeCCCCCC--------chHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 2577888899999987 888 99999999999875 5688999999999999999998763
No 48
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=5.4e-33 Score=291.92 Aligned_cols=290 Identities=23% Similarity=0.333 Sum_probs=227.9
Q ss_pred HHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc-hhhhhcCCCCC-cc-ccccHHHHhccCCcEEEE-eeEEEEcCCCCc
Q 009310 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKPM-LYELLSGEVDA-WE-IAPRFADLLANTGVQFFK-DRVKLLCPSDHL 168 (538)
Q Consensus 93 ~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~-~~~~~~g~~~~-~~-~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~ 168 (538)
+||.+|+++ .++++|||||+++++.|.|. ++.+..+.... ++ +....+.++.+.+++++. ++|+.++++.+
T Consensus 1 saA~~l~~~----~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~- 75 (427)
T TIGR03385 1 SAASRVRRL----DKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQ- 75 (427)
T ss_pred CHHHHHHhh----CCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCC-
Confidence 478888874 26789999999999999884 77776665542 22 333345565778999875 69999987665
Q ss_pred CcCCCceeecccEEEcC---CceEEE--eeEEEEeCCCCCCCCCCCCcc-ccCcCCCChHHHHHHHHHHHHHHHhccCCC
Q 009310 169 GVNGPMACTHGGTVLLE---SGLIVE--YDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRNFGKD 242 (538)
Q Consensus 169 ~~~~~~~~~~~~~v~~~---~g~~~~--yD~lVlAtG~~~~~p~ipG~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~ 242 (538)
.+.+. ++..+. ||+||||||+.|..|++||++ ++.+.+.+..++..++..+...
T Consensus 76 ------------~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~-------- 135 (427)
T TIGR03385 76 ------------TVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKN-------- 135 (427)
T ss_pred ------------EEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhc--------
Confidence 23332 234677 999999999999999999975 5566677787777777665321
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc-CCCCChhhHHHHHHHHHhCCCEEEcCceeeEEecccccc
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~ 321 (538)
.+++|+|||+|++|+|+|..|++.+.+ |+++++.+.+ .+.+++...+.+.+.|+++||++++++.|.+++.++
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--- 209 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE--- 209 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC---
Confidence 157999999999999999999887665 9999998887 466788888999999999999999999999998643
Q ss_pred ccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCC
Q 009310 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 401 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~ 401 (538)
..+.+. +++++++|.+|+|+|.+|+.+++... +++++++|+|.||++
T Consensus 210 --------------------~~v~~~--------~g~~i~~D~vi~a~G~~p~~~~l~~~-----gl~~~~~G~i~vd~~ 256 (427)
T TIGR03385 210 --------------------RVKVFT--------SGGVYQADMVILATGIKPNSELAKDS-----GLKLGETGAIWVNEK 256 (427)
T ss_pred --------------------CEEEEc--------CCCEEEeCEEEECCCccCCHHHHHhc-----CcccCCCCCEEECCC
Confidence 111222 56789999999999999998877543 577888899999999
Q ss_pred cccCCCCCEEEccccccccCCC-CC-CCCccHHHHHHHHHHHHHHHHH
Q 009310 402 LCVKGHPRIFALGDSSALRDSS-GR-PLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 402 l~~~~~~~VfaiGD~~~~~~~~-~~-~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
+|+ +.|+|||+|||+..++.. ++ ..+++++.|.+||+++|+||.+
T Consensus 257 ~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 257 FQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred cEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 998 899999999999875542 22 2356889999999999999974
No 49
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=3e-33 Score=308.74 Aligned_cols=356 Identities=16% Similarity=0.098 Sum_probs=220.4
Q ss_pred ccCCcc--cccc-cccccccchhHHHHHHHHhhhcccccccccccccccCcCCCCCCCCCCeEEEECCcHHHHHHHHHhh
Q 009310 23 SKLFPF--SSKS-YLSFKTCRKNRFISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLE 99 (538)
Q Consensus 23 ~~~~~~--~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VVIIGgG~AGl~aA~~L~ 99 (538)
.+|||. +..| ..|...|+|.....++......+...+...... ........+....++|+|||||||||+||..|+
T Consensus 481 ~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~-~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~La 559 (1019)
T PRK09853 481 RNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEY-KQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLA 559 (1019)
T ss_pred hCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhc-ccccCCCCccCCCCcEEEECCCHHHHHHHHHHH
Confidence 456663 2333 677777877654444433322222111111000 000001111245689999999999999999999
Q ss_pred hcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecc
Q 009310 100 SLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG 179 (538)
Q Consensus 100 ~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~ 179 (538)
+ .|++|+|||+++..+.... ..+++...+.+......+++...++++..+....+
T Consensus 560 r------~G~~VtV~Ek~~~~GG~lr--~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi----------------- 614 (1019)
T PRK09853 560 R------AGHPVTVFEREENAGGVVK--NIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDL----------------- 614 (1019)
T ss_pred H------cCCeEEEEecccccCccee--eecccccccHHHHHHHHHHHHHcCCEEEeCceeEE-----------------
Confidence 9 6889999999887543321 11222222223333333555667899887643222
Q ss_pred cEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHH
Q 009310 180 GTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVE 258 (538)
Q Consensus 180 ~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E 258 (538)
.+++.....||+||||||+. +..+++||..++++ ...+-....+.. ......+++|+|||||++|+|
T Consensus 615 ---~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~--saldfL~~~k~~-------~~~~~~GKrVVVIGGGnVAmD 682 (1019)
T PRK09853 615 ---TVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVI--KALPFLEEYKNK-------GTALKLGKHVVVVGGGNTAMD 682 (1019)
T ss_pred ---EhhhheeccCCEEEECcCCCCCCCCCCCCccCCce--ehHHHHHHHhhh-------cccccCCCEEEEECCChHHHH
Confidence 22333456799999999997 45567888643322 111111111110 001123789999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEecCC-ccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCccccccc
Q 009310 259 LAATVSERLEEKGIVQAINVET-TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 337 (538)
Q Consensus 259 ~A~~l~~~~~~~~~Vtlv~~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
+|..+.+.+..+ .|+++.+.+ ..++... +.+.+.+ +.||+++.+..+.++..++... .......
T Consensus 683 ~Ar~a~RlgGak-eVTLVyRr~~~~MPA~~----eEle~Al-eeGVe~~~~~~p~~I~~dG~l~---------~~~~~lg 747 (1019)
T PRK09853 683 AARAALRVPGVE-KVTVVYRRTKQEMPAWR----EEYEEAL-EDGVEFKELLNPESFDADGTLT---------CRVMKLG 747 (1019)
T ss_pred HHHHHHhcCCCc-eEEEEEccCcccccccH----HHHHHHH-HcCCEEEeCCceEEEEcCCcEE---------EEEEEee
Confidence 999887664311 299999865 3344333 2333333 5799999999999987533110 0000000
Q ss_pred -ccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEcccc
Q 009310 338 -DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 416 (538)
Q Consensus 338 -~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~ 416 (538)
....+..... ..+++.++++|+||+|+|.+|+++++... +++++++|++.||+++++ +.|+|||+|||
T Consensus 748 ~~d~~Gr~~~v-----~tg~~~~I~aD~VIvAIG~~Pntelle~~-----GL~ld~~G~I~VDetlqT-s~pgVFAaGD~ 816 (1019)
T PRK09853 748 EPDESGRRRPV-----ETGETVTLEADTVITAIGEQVDTELLKAN-----GIPLDKKGWPVVDANGET-SLTNVYMIGDV 816 (1019)
T ss_pred cccCCCceEEe-----eCCCeEEEEeCEEEECCCCcCChhHHHhc-----CccccCCCCEEeCCCccc-CCCCEEEEecc
Confidence 0000111100 12356789999999999999998887543 577888999999999998 89999999999
Q ss_pred ccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 417 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 417 ~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
+.. |.++..|+.||+.||.+|.+.+.
T Consensus 817 a~G--------p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 817 QRG--------PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ccC--------chHHHHHHHHHHHHHHHHhhhcC
Confidence 975 67899999999999999998765
No 50
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.7e-32 Score=295.63 Aligned_cols=298 Identities=18% Similarity=0.183 Sum_probs=206.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchh-hh--hcCC--CCCccccccHHHHhccCCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY-EL--LSGE--VDAWEIAPRFADLLANTGV 152 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~-~~--~~g~--~~~~~~~~~~~~~~~~~~v 152 (538)
..+||+|||||||||+||..|++ .|++|+|||++.. ....... .. ..+. ....++...+++.++..++
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar------~g~~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv 75 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR------AKLDTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGV 75 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH------CCCCEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCC
Confidence 34899999999999999999998 6889999999653 2221111 10 1111 1223444556666677789
Q ss_pred EEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHH
Q 009310 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232 (538)
Q Consensus 153 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~ 232 (538)
+++.+.|+.++.+... ..+.+.++ .+.||+||||||+.|+.|++||...+.. .............
T Consensus 76 ~~~~~~V~~i~~~~~~-----------~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~--~~v~~~~~~~~~~- 140 (555)
T TIGR03143 76 KFLQAEVLDVDFDGDI-----------KTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTG--RGVAYCATCDGEF- 140 (555)
T ss_pred EEeccEEEEEEecCCE-----------EEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCC--ceEEEEeecChhh-
Confidence 9988889888765431 14555555 6899999999999999999999643211 0000000000000
Q ss_pred HHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 233 ELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 233 ~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
..+++|+|||||++|+|+|..|++++.+ |+++++.+.+.. . .....+.+++.||++++++.|+
T Consensus 141 ---------~~g~~VvVIGgG~~g~E~A~~L~~~g~~---Vtli~~~~~~~~--~---~~~~~~~~~~~gV~i~~~~~V~ 203 (555)
T TIGR03143 141 ---------FTGMDVFVIGGGFAAAEEAVFLTRYASK---VTVIVREPDFTC--A---KLIAEKVKNHPKIEVKFNTELK 203 (555)
T ss_pred ---------cCCCEEEEECCCHHHHHHHHHHHccCCE---EEEEEeCCcccc--C---HHHHHHHHhCCCcEEEeCCEEE
Confidence 1168999999999999999999877665 999999876522 1 2223334456799999999999
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceE--EeccE----EEEecCCCCCCCCCCCCCCccC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADL----VLWTVGSKPLLPHVEPPNNRLH 386 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~--l~~D~----vI~a~G~~p~~~~l~~~~~~~~ 386 (538)
++.+++.. ..+.+... .+++..+ +++|. ||+++|++|+++++..
T Consensus 204 ~i~~~~~v---------------------~~v~~~~~---~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~------ 253 (555)
T TIGR03143 204 EATGDDGL---------------------RYAKFVNN---VTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG------ 253 (555)
T ss_pred EEEcCCcE---------------------EEEEEEEC---CCCCEEEEeccccccceEEEEEeCCCCChhHHhh------
Confidence 99864311 11222210 0112222 34676 9999999999887753
Q ss_pred CCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 387 ~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
++.++++|+|.||+++|+ +.|+|||+|||+.. .++.+..|+.||+.+|.+|.+.+.+.
T Consensus 254 ~l~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~~-------~~~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 254 VVELDKRGYIPTNEDMET-NVPGVYAAGDLRPK-------ELRQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred hcccCCCCeEEeCCcccc-CCCCEEEceeccCC-------CcchheeHHhhHHHHHHHHHHHHHhh
Confidence 367888899999999999 99999999999752 13566789999999999999888653
No 51
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.5e-32 Score=293.80 Aligned_cols=297 Identities=20% Similarity=0.222 Sum_probs=211.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc----hhhhhcC-CCCCccccccHHHHhccCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----LYELLSG-EVDAWEIAPRFADLLANTG 151 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~----~~~~~~g-~~~~~~~~~~~~~~~~~~~ 151 (538)
...+||+|||||||||+||..|++ .|++|+|||+. ++.++. +..+..- .....++...+.+.++.++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~------~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~g 281 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR------KGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYP 281 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 445899999999999999999999 68899999753 222221 1111110 0122334455666677788
Q ss_pred cEEEEe-eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHH
Q 009310 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230 (538)
Q Consensus 152 v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~ 230 (538)
++++.+ +|+.++.+... ..+.++++..+.||+||+|||+.++.|++||..++... ...........
T Consensus 282 v~i~~~~~V~~I~~~~~~-----------~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~--~v~~~~~~~~~ 348 (515)
T TIGR03140 282 IDLMENQRAKKIETEDGL-----------IVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGK--GVAYCPHCDGP 348 (515)
T ss_pred CeEEcCCEEEEEEecCCe-----------EEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCC--eEEEeeccChh
Confidence 999874 78888754421 25666777789999999999999999999996432110 00000000000
Q ss_pred HHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHh-CCCEEEcCc
Q 009310 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLVLGY 309 (538)
Q Consensus 231 l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~~ 309 (538)
. ..+++|+|||||++|+|+|..|+..+.+ |+++++.+.+.. ...+.+.+++ .||++++++
T Consensus 349 ~----------~~~k~VvViGgG~~g~E~A~~L~~~g~~---Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~~~ 409 (515)
T TIGR03140 349 F----------FKGKDVAVIGGGNSGIEAAIDLAGIVRH---VTVLEFADELKA------DKVLQDKLKSLPNVDILTSA 409 (515)
T ss_pred h----------cCCCEEEEECCcHHHHHHHHHHHhcCcE---EEEEEeCCcCCh------hHHHHHHHhcCCCCEEEECC
Confidence 0 1167999999999999999999887665 999998776532 3445667776 699999999
Q ss_pred eeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCC
Q 009310 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389 (538)
Q Consensus 310 ~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~ 389 (538)
.++++.++++.. ..+++.. . ..++++.+++|.||+++|.+|+++++... ++
T Consensus 410 ~v~~i~~~~~~v--------------------~~v~~~~--~-~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~------~~ 460 (515)
T TIGR03140 410 QTTEIVGDGDKV--------------------TGIRYQD--R-NSGEEKQLDLDGVFVQIGLVPNTEWLKDA------VE 460 (515)
T ss_pred eeEEEEcCCCEE--------------------EEEEEEE--C-CCCcEEEEEcCEEEEEeCCcCCchHHhhh------cc
Confidence 999998753110 2344431 1 11234679999999999999999887531 56
Q ss_pred cCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 390 l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
++++|+|.||+++|| +.|+|||+|||+..+ .+++..|+.+|..||.+|...+.
T Consensus 461 ~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~-------~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 461 LNRRGEIVIDERGRT-SVPGIFAAGDVTTVP-------YKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred cCCCCeEEECCCCCC-CCCCEEEcccccCCc-------cceEEEEEccHHHHHHHHHHHHh
Confidence 778899999999999 999999999999852 24667899999999999988764
No 52
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=3.9e-32 Score=301.56 Aligned_cols=301 Identities=17% Similarity=0.123 Sum_probs=193.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||||||||+||.+|++ .|++|+|||+++..+..... .++....+.+......+.+...+++++.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr------~G~~VTV~Ek~~~lGG~l~~--~IP~~rlp~e~l~~~ie~l~~~GVe~~~ 606 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLAR------AGHPVTVFEKKEKPGGVVKN--IIPEFRISAESIQKDIELVKFHGVEFKY 606 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH------CCCeEEEEecccccCceeee--cccccCCCHHHHHHHHHHHHhcCcEEEE
Confidence 356899999999999999999998 78899999998765433211 1111111222222233455567888877
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC-CCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~-~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
+.-. .+.+++.....||+||||||+.+ ..+.+||..+.++ ...+....+.
T Consensus 607 g~~~--------------------d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~--~avefL~~~~------- 657 (1012)
T TIGR03315 607 GCSP--------------------DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVL--KSLEFLRAFK------- 657 (1012)
T ss_pred eccc--------------------ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCccee--eHHHHHHHhh-------
Confidence 6311 12223333567999999999984 5556777433221 1111111111
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHH-HHhcCcEEEEecCCc-cCCCCChhhHHHHHHHHHhCCCEEEcCceeeE
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSER-LEEKGIVQAINVETT-ICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~-~~~~~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~ 313 (538)
........+++|+|||||++|+|+|..+.+. +.+ .|+++.+... .++....+ +.+. .+.||+++.+..+.+
T Consensus 658 ~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~--kVtLVyRr~~~~Mpa~~eE----l~~a-leeGVe~~~~~~p~~ 730 (1012)
T TIGR03315 658 EGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVE--KVTVVYRRTKRYMPASREE----LEEA-LEDGVDFKELLSPES 730 (1012)
T ss_pred ccccccccCCeEEEECCCHHHHHHHHHHHHhCCCc--eEEEEEccCccccccCHHH----HHHH-HHcCCEEEeCCceEE
Confidence 1100112378999999999999999988765 322 2999988663 34333332 3333 357999999998888
Q ss_pred EeccccccccccCCCCCccccccc-ccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCC
Q 009310 314 IRRVGEFEASVKQPESGAIPNIAA-DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 392 (538)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~ 392 (538)
+.. +... +...... ....+... .. ..++..++++|+||+|+|.+|+.+++.. .++++++
T Consensus 731 I~~-g~l~---------v~~~~l~~~d~sGr~~-~v----~~Gee~~I~aD~VIvAiG~~Pnt~lle~-----~GL~ld~ 790 (1012)
T TIGR03315 731 FED-GTLT---------CEVMKLGEPDASGRRR-PV----GTGETVDLPADTVIAAVGEQVDTDLLQK-----NGIPLDE 790 (1012)
T ss_pred EEC-CeEE---------EEEEEeecccCCCcee-ee----cCCCeEEEEeCEEEEecCCcCChHHHHh-----cCcccCC
Confidence 873 2110 0000000 00001110 00 1124567999999999999999888754 3578888
Q ss_pred CCCeeeCCC-cccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 393 RGQAETDET-LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 393 ~G~i~vd~~-l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
+|++.||+. +++ +.|+|||+|||+.. |.++..|+.||+.||.+|.+...
T Consensus 791 ~G~I~VD~~~~~T-s~pgVFAaGD~a~G--------P~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 791 YGWPVVNQATGET-NITNVFVIGDANRG--------PATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCCEEeCCCCCcc-CCCCEEEEeCcCCC--------ccHHHHHHHHHHHHHHHHhcccc
Confidence 999999975 787 89999999999875 67899999999999999986543
No 53
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-32 Score=265.24 Aligned_cols=289 Identities=21% Similarity=0.246 Sum_probs=223.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCE-EEEEcCCCCcccCcc----hhhhh--cCCCCCccccccHHHHhccC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFKPM----LYELL--SGEVDAWEIAPRFADLLANT 150 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~~~~~~~p~----~~~~~--~g~~~~~~~~~~~~~~~~~~ 150 (538)
+.+||+|||||||||+||.+++| .+.+ ++|+|+... ..++. ...++ .+.....++...+.++....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r------~~l~~~li~~~~~~-gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~ 74 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR------AGLKVVLILEGGEP-GGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKF 74 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH------cCCCcEEEEecCCc-CCccccceeecCCCCCccCCchHHHHHHHHHHHhhc
Confidence 45899999999999999999999 6778 666666432 22222 11111 12223344555566666678
Q ss_pred CcEEEEeeEEEEcCCC-CcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCcccc---CcCCCChHHHHH
Q 009310 151 GVQFFKDRVKLLCPSD-HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLEDACR 226 (538)
Q Consensus 151 ~v~~~~~~v~~i~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~---~~~~~~~~d~~~ 226 (538)
++++....|..++... .+ .|.++++. +.+++||||||..++.|.+||..++ ..+++..+|. .
T Consensus 75 ~~~~~~~~v~~v~~~~~~F------------~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~ 140 (305)
T COG0492 75 GVEIVEDEVEKVELEGGPF------------KVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-F 140 (305)
T ss_pred CeEEEEEEEEEEeecCceE------------EEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-c
Confidence 8999999999988766 43 78888886 9999999999999999999875433 2344455555 2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhC-CCEE
Q 009310 227 VDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR-KVQL 305 (538)
Q Consensus 227 ~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~-gV~v 305 (538)
++ +++|+|||||.+++|.|.+|..++.+ |++++|.+.+-. .+.+.+.++++ +|++
T Consensus 141 ~~---------------~k~v~ViGgG~sAve~Al~L~~~a~~---Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~ 196 (305)
T COG0492 141 FK---------------GKDVVVIGGGDSAVEEALYLSKIAKK---VTLVHRRDEFRA------EEILVERLKKNVKIEV 196 (305)
T ss_pred cc---------------CCeEEEEcCCHHHHHHHHHHHHhcCe---EEEEecCcccCc------CHHHHHHHHhcCCeEE
Confidence 21 56999999999999999999999887 999999887632 45566777766 8999
Q ss_pred EcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCcc
Q 009310 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 385 (538)
Q Consensus 306 ~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~ 385 (538)
++++.+.++.+++ . .+++++... +..+.+++|-+++++|..|+++++....
T Consensus 197 ~~~~~i~ei~G~~-v---------------------~~v~l~~~~----~~~~~~~~~gvf~~iG~~p~~~~~~~~~--- 247 (305)
T COG0492 197 LTNTVVKEILGDD-V---------------------EGVVLKNVK----GEEKELPVDGVFIAIGHLPNTELLKGLG--- 247 (305)
T ss_pred EeCCceeEEecCc-c---------------------ceEEEEecC----CceEEEEeceEEEecCCCCchHHHhhcc---
Confidence 9999999999865 1 466666321 2456899999999999999998887643
Q ss_pred CCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 386 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 386 ~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
. ++++|+|.||+.++| +.|+|||+||++... .+++..|..+|..+|.++.+.+..
T Consensus 248 --~-~~~~g~I~v~~~~~T-svpGifAaGDv~~~~-------~rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 248 --V-LDENGYIVVDEEMET-SVPGIFAAGDVADKN-------GRQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred --c-cCCCCcEEcCCCccc-CCCCEEEeEeeccCc-------ccEEeehhhhHHHHHHHHHHHhhh
Confidence 3 789999999999999 999999999999862 347888999999999999888764
No 54
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=1.6e-31 Score=283.12 Aligned_cols=315 Identities=18% Similarity=0.171 Sum_probs=203.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||||||||++|..|++ .|++|+|||+.+....... +. +.....+.++.....+.+...+++++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~------~G~~V~vie~~~~~GG~l~-~g-ip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR------AGHKVTVFERADRIGGLLR-YG-IPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh------CCCcEEEEecCCCCCceee-ec-CCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 355799999999999999999998 6889999999876532211 11 111111223333344556677899887
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHH-HHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRV-DRKLSEL 234 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~-~~~l~~~ 234 (538)
+.....+.. .+ .....||+||+|||+. ++.+++||.+.. .+.+..+...- ...+...
T Consensus 213 ~~~v~~~~~------------------~~-~~~~~~d~vvlAtGa~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~~ 271 (471)
T PRK12810 213 NVEVGKDIT------------------AE-ELLAEYDAVFLGTGAYKPRDLGIPGRDLD--GVHFAMDFLIQNTRRVLGD 271 (471)
T ss_pred CCEECCcCC------------------HH-HHHhhCCEEEEecCCCCCCcCCCCCccCC--CcEEHHHHHHHHHhhhccc
Confidence 754332111 11 1134799999999997 778889986321 11121111110 0000000
Q ss_pred HHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC-C----hhh-HHHHHHHHHhCCCEEEcC
Q 009310 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-T----PGN-REAALKVLSARKVQLVLG 308 (538)
Q Consensus 235 ~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~-~----~~~-~~~~~~~l~~~gV~v~~~ 308 (538)
.........+++|+|||+|++|+|+|..+.+.+.+. |++++......... . +.. .....+.+++.||+++++
T Consensus 272 ~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 349 (471)
T PRK12810 272 ETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKS--VTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFN 349 (471)
T ss_pred cccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCe--EEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEec
Confidence 000001123789999999999999999887766532 88666544322211 0 001 111356678899999999
Q ss_pred ceeeEEeccccccccccCCCCCcccccccccCCCceEEe---eccc---ccCCcceEEeccEEEEecCCCCCC-CCCCCC
Q 009310 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQPA---IKGLESQIFEADLVLWTVGSKPLL-PHVEPP 381 (538)
Q Consensus 309 ~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~---~~~~~g~~l~~D~vI~a~G~~p~~-~~l~~~ 381 (538)
..+++|..+++.. .+|++. +.+. ...++.+++++|.||+++|.+|+. .++..
T Consensus 350 ~~~~~i~~~~g~v--------------------~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~- 408 (471)
T PRK12810 350 VQTKEFEGENGKV--------------------TGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ- 408 (471)
T ss_pred cCceEEEccCCEE--------------------EEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccc-
Confidence 9999997533111 122221 1000 011244689999999999999985 35543
Q ss_pred CCccCCCCcCCCCCeeeC-CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 009310 382 NNRLHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456 (538)
Q Consensus 382 ~~~~~~~~l~~~G~i~vd-~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p 456 (538)
.+++++++|++.+| +++++ +.|+|||+|||+.. +.++..|+.||+.+|.+|...+.++.+.|
T Consensus 409 ----~gl~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g--------~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 471 (471)
T PRK12810 409 ----FGVELDERGRVAAPDNAYQT-SNPKVFAAGDMRRG--------QSLVVWAIAEGRQAARAIDAYLMGSTALP 471 (471)
T ss_pred ----cCcccCCCCCEEeCCCcccC-CCCCEEEccccCCC--------chhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 35778889999998 79998 99999999999974 56788999999999999999998876544
No 55
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.4e-31 Score=286.64 Aligned_cols=295 Identities=21% Similarity=0.255 Sum_probs=213.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc----hhhhhc-CCCCCccccccHHHHhccCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----LYELLS-GEVDAWEIAPRFADLLANTG 151 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~----~~~~~~-g~~~~~~~~~~~~~~~~~~~ 151 (538)
...+||+||||||||++||.+|++ .|++|+||++. ++.+.. +..+.. ......++...+...++.++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~------~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 280 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR------KGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYD 280 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCC
Confidence 445899999999999999999998 68899999874 211111 111110 01223344556677777788
Q ss_pred cEEEEe-eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcC---CCChHHHHHH
Q 009310 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP---FSTLEDACRV 227 (538)
Q Consensus 152 v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~---~~~~~d~~~~ 227 (538)
++++.. +|++++..... +.+.+.++..+.||+||+|||+.++.+++||..++... .....+.
T Consensus 281 v~i~~~~~V~~I~~~~~~-----------~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~--- 346 (517)
T PRK15317 281 VDIMNLQRASKLEPAAGL-----------IEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG--- 346 (517)
T ss_pred CEEEcCCEEEEEEecCCe-----------EEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCc---
Confidence 998864 88888765321 25666777789999999999999999999996543111 0101110
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHh-CCCEEE
Q 009310 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLV 306 (538)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~ 306 (538)
.. .++++|+|||+|++|+|+|..|+..+.+ |+++++.+.+.. ...+.+.+.+ .||+++
T Consensus 347 --~~----------~~gk~VvVVGgG~~g~e~A~~L~~~~~~---Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~ 405 (517)
T PRK15317 347 --PL----------FKGKRVAVIGGGNSGVEAAIDLAGIVKH---VTVLEFAPELKA------DQVLQDKLRSLPNVTII 405 (517)
T ss_pred --hh----------cCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEECccccc------cHHHHHHHhcCCCcEEE
Confidence 00 1268999999999999999999887665 999998876532 2345566665 699999
Q ss_pred cCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccC
Q 009310 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 386 (538)
Q Consensus 307 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~ 386 (538)
+++.+.++.++++.. ..+.++ +.. +++.+++++|.|++++|.+|+++++...
T Consensus 406 ~~~~v~~i~~~~g~v--------------------~~v~~~--~~~-~g~~~~i~~D~v~~~~G~~p~~~~l~~~----- 457 (517)
T PRK15317 406 TNAQTTEVTGDGDKV--------------------TGLTYK--DRT-TGEEHHLELEGVFVQIGLVPNTEWLKGT----- 457 (517)
T ss_pred ECcEEEEEEcCCCcE--------------------EEEEEE--ECC-CCcEEEEEcCEEEEeECCccCchHHhhh-----
Confidence 999999998753110 123333 111 1234579999999999999999887541
Q ss_pred CCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 387 ~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
+.++++|+|.||+++|+ +.|+|||+|||+..+ .+.+..|+.+|..||.++...+..
T Consensus 458 -v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~-------~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 458 -VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVP-------YKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred -eeeCCCCcEEECcCCCC-CCCCEEECccccCCC-------CCEEEEhhhhHHHHHHHHHHHHhh
Confidence 56788899999999998 999999999999862 367888999999999999988764
No 56
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=7.1e-32 Score=280.16 Aligned_cols=303 Identities=19% Similarity=0.286 Sum_probs=258.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc-CcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~-~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
+.++||||.|+||..+...+.+. .+.-++||+|-.+++..| ..++..++.+..+.+++...-.+|+++.+++++.+
T Consensus 3 k~klvvvGnGmag~r~iEell~~---~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~ 79 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLES---APDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTG 79 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhc---CcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcC
Confidence 47999999999999999999873 236689999999998766 67899999998888998888889999999999986
Q ss_pred -eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCcc-ccCcCCCChHHHHHHHHHHHHHH
Q 009310 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~-~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
.++.||.+.+ .|+++.|..+.||.||+||||.|+++++||.. ..++.+++++|...+.+.-+.
T Consensus 80 ~~v~~idr~~k-------------~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~-- 144 (793)
T COG1251 80 EKVIQIDRANK-------------VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARN-- 144 (793)
T ss_pred CeeEEeccCcc-------------eEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhc--
Confidence 8999999887 59999999999999999999999999999974 457788999998887666222
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC-CCChhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
.++-+|||||..|+|.|..|.+.+-+ +++++..+.++. .+++...+.+++.|++.|++++++...+++
T Consensus 145 --------~~~avVIGGGLLGlEaA~~L~~~Gm~---~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei 213 (793)
T COG1251 145 --------KKKAVVIGGGLLGLEAARGLKDLGME---VTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEI 213 (793)
T ss_pred --------cCCcEEEccchhhhHHHHHHHhCCCc---eEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhh
Confidence 45689999999999999999988777 999999888775 457777888889999999999999998888
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G 394 (538)
.+++.. .++.++ +|+.+++|+||+++|.+||+++.... |++.++
T Consensus 214 ~g~~~~---------------------~~vr~~--------DG~~i~ad~VV~a~GIrPn~ela~~a-----Glavnr-- 257 (793)
T COG1251 214 VGEDKV---------------------EGVRFA--------DGTEIPADLVVMAVGIRPNDELAKEA-----GLAVNR-- 257 (793)
T ss_pred hcCcce---------------------eeEeec--------CCCcccceeEEEecccccccHhHHhc-----CcCcCC--
Confidence 874422 455554 89999999999999999999887754 467766
Q ss_pred CeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 395 ~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.||+++|| +.|+|||+|+|+.... ........+..|++++|.++.....+
T Consensus 258 GIvvnd~mqT-sdpdIYAvGEcae~~g----~~yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 258 GIVVNDYMQT-SDPDIYAVGECAEHRG----KVYGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred Ceeecccccc-cCCCeeehhhHHHhcC----ccceehhHHHHHHHHHHHHhccCccc
Confidence 6999999999 9999999999998732 34667788999999999999876554
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=1.5e-31 Score=298.25 Aligned_cols=310 Identities=18% Similarity=0.129 Sum_probs=206.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||||||||+||..|++ .|++|+|||+.+....... +. ++....+.++.....+.+...++++..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~l~-~g-ip~~rlp~~~~~~~~~~l~~~gv~~~~ 500 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK------RGYDVTVFEALHEIGGVLK-YG-IPEFRLPKKIVDVEIENLKKLGVKFET 500 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCeee-ec-CCCCCCCHHHHHHHHHHHHHCCCEEEC
Confidence 356899999999999999999999 6889999999765332211 11 111111223333334556677899887
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC-CCCCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~-~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
+....- .+++++.....||+||||||+ .|+.+++||.+. ..+.+..+............
T Consensus 501 ~~~v~~------------------~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~~~ 560 (752)
T PRK12778 501 DVIVGK------------------TITIEELEEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLTRVNLMDAAS 560 (752)
T ss_pred CCEECC------------------cCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHHHHhhccccc
Confidence 653211 244444445679999999999 588899999632 12333333332211110000
Q ss_pred H-hccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 236 R-RNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 236 ~-~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
. .......+++|+|||||++|+|+|..+.+.+.+. |+++.+.+.. .++....+ .+.+++.||++++++.+.++
T Consensus 561 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~--Vtlv~r~~~~--~~~~~~~e--~~~~~~~GV~i~~~~~~~~i 634 (752)
T PRK12778 561 PDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAER--VTIVYRRSEE--EMPARLEE--VKHAKEEGIEFLTLHNPIEY 634 (752)
T ss_pred ccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCe--EEEeeecCcc--cCCCCHHH--HHHHHHcCCEEEecCcceEE
Confidence 0 0001123689999999999999999998876542 9999886541 12222211 24578889999999999998
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEe---eccc---------ccCCcceEEeccEEEEecCCCCCCCCCCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQPA---------IKGLESQIFEADLVLWTVGSKPLLPHVEPPN 382 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~---------~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~ 382 (538)
..+++... .++.+. +... ...++.+++++|+||+|+|++|+..++...
T Consensus 635 ~~~~~g~v-------------------~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~- 694 (752)
T PRK12778 635 LADEKGWV-------------------KQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI- 694 (752)
T ss_pred EECCCCEE-------------------EEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-
Confidence 65321100 122221 0000 011234579999999999999997665432
Q ss_pred CccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 383 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 383 ~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
.+++++++|+|.||+++++ +.|+|||+|||+.. +.++..|+.+|+.+|.+|.+.+.++
T Consensus 695 ---~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g--------~~~vv~Av~~G~~AA~~I~~~L~~~ 752 (752)
T PRK12778 695 ---PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRG--------GATVILAMGDGKRAAAAIDEYLSSK 752 (752)
T ss_pred ---cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCC--------cHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2577888999999999988 99999999999975 6788999999999999999998763
No 58
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.98 E-value=1.2e-31 Score=293.28 Aligned_cols=356 Identities=19% Similarity=0.116 Sum_probs=221.7
Q ss_pred ccCCc--ccccc-cccccccchhHHHHHH-HHhhhcccccccccccccccCcCCCCCCCCCCeEEEECCcHHHHHHHHHh
Q 009310 23 SKLFP--FSSKS-YLSFKTCRKNRFISFA-ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRL 98 (538)
Q Consensus 23 ~~~~~--~~~~~-~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VVIIGgG~AGl~aA~~L 98 (538)
.+||| -+..| ..|...|.|.....++ -|..++..+.......... .+ .++....++|+|||||||||++|..|
T Consensus 136 ~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~-~~--~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 136 TIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERY-IP--ERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred hCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCccc-CC--CCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 35555 23333 5566667776544443 3555554432111000000 00 11223458999999999999999999
Q ss_pred hhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeec
Q 009310 99 ESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTH 178 (538)
Q Consensus 99 ~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~ 178 (538)
++ .|++|+|||+++....... ..+.....+.++.....+.+...++++..+.....+
T Consensus 213 a~------~G~~Vtv~e~~~~~GG~l~--~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d--------------- 269 (652)
T PRK12814 213 LR------KGHDVTIFDANEQAGGMMR--YGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD--------------- 269 (652)
T ss_pred HH------CCCcEEEEecCCCCCceee--ecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc---------------
Confidence 98 6889999999887532211 111111122333333344556678888776543221
Q ss_pred ccEEEcCCceEEEeeEEEEeCCCCC-CCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHH
Q 009310 179 GGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGV 257 (538)
Q Consensus 179 ~~~v~~~~g~~~~yD~lVlAtG~~~-~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~ 257 (538)
++.++. ...||+||||||+.+ ..+++||.+.. .+.+..+... .. ... .....+++|+|||+|++|+
T Consensus 270 ---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~--gv~~~~~~l~---~~---~~~-~~~~~gk~VvVIGgG~~a~ 336 (652)
T PRK12814 270 ---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELP--GVISGIDFLR---NV---ALG-TALHPGKKVVVIGGGNTAI 336 (652)
T ss_pred ---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcC--CcEeHHHHHH---Hh---hcC-CcccCCCeEEEECCCHHHH
Confidence 122222 235999999999985 56788885321 1112112111 11 000 0112378999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEecCCc-cCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccc
Q 009310 258 ELAATVSERLEEKGIVQAINVETT-ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 336 (538)
Q Consensus 258 E~A~~l~~~~~~~~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
|+|..+.+.+.+. |+++.+.+. .++.... .+.+ ..+.||+++++..+.++..+++.. .+
T Consensus 337 e~A~~l~~~Ga~~--Vtlv~r~~~~~mpa~~~----ei~~-a~~eGV~i~~~~~~~~i~~~~~~~--------~v----- 396 (652)
T PRK12814 337 DAARTALRLGAES--VTILYRRTREEMPANRA----EIEE-ALAEGVSLRELAAPVSIERSEGGL--------EL----- 396 (652)
T ss_pred HHHHHHHHcCCCe--EEEeeecCcccCCCCHH----HHHH-HHHcCCcEEeccCcEEEEecCCeE--------EE-----
Confidence 9999988776432 999988764 3333322 2223 345799999999999887643110 00
Q ss_pred cccCCCceEEeecc-c--------ccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCC-CcccCC
Q 009310 337 ADKNSDKYILELQP-A--------IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE-TLCVKG 406 (538)
Q Consensus 337 ~~~~~~~v~~~~~~-~--------~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~-~l~~~~ 406 (538)
..+.++... . ...++...+++|.||+++|..|+.+++... +++++.+|+|.||+ ++++ +
T Consensus 397 -----~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~-----gl~~~~~G~I~vd~~~~~T-s 465 (652)
T PRK12814 397 -----TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAA-----GIGTSRNGTVKVDPETLQT-S 465 (652)
T ss_pred -----EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccccc-----CccccCCCcEeeCCCCCcC-C
Confidence 001111100 0 011234579999999999999998887543 57788889999996 5676 8
Q ss_pred CCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 009310 407 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456 (538)
Q Consensus 407 ~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p 456 (538)
.|+|||+||++.. +.++..|+.||+.+|.+|...+.++++.+
T Consensus 466 ~pgVfA~GDv~~g--------~~~v~~Ai~~G~~AA~~I~~~L~g~~~~~ 507 (652)
T PRK12814 466 VAGVFAGGDCVTG--------ADIAINAVEQGKRAAHAIDLFLNGKPVTA 507 (652)
T ss_pred CCCEEEcCCcCCC--------chHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999975 67889999999999999999999877543
No 59
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=3.2e-30 Score=263.66 Aligned_cols=320 Identities=20% Similarity=0.155 Sum_probs=203.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||||++|+++|..|++ .|++|++||+.+........ .........+.+......+ .+.+++++.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~l-~~~~i~~~~ 87 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC------LGYEVHVYDKLPEPGGLMLF-GIPEFRIPIERVREGVKEL-EEAGVVFHT 87 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCceeee-cCcccccCHHHHHHHHHHH-HhCCeEEec
Confidence 345799999999999999999998 67899999998775432111 0111111112222233344 345888887
Q ss_pred ee-EEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC-CCCCCCCCCccccCcCCCChH-HHHHHHHHHHH
Q 009310 157 DR-VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLE-DACRVDRKLSE 233 (538)
Q Consensus 157 ~~-v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~-~~~~p~ipG~~~~~~~~~~~~-d~~~~~~~l~~ 233 (538)
+. +..++..... ... ......+..++ ..+.||+||||||+ .++.|++||.+.. .+.+.. ....+......
T Consensus 88 ~~~v~~~~~~~~~--~~~--~~~~~~~~~~~-~~~~~d~lviAtGs~~~~~~~ipg~~~~--~v~~~~~~~~~~~~~~~~ 160 (352)
T PRK12770 88 RTKVCCGEPLHEE--EGD--EFVERIVSLEE-LVKKYDAVLIATGTWKSRKLGIPGEDLP--GVYSALEYLFRIRAAKLG 160 (352)
T ss_pred CcEEeeccccccc--ccc--ccccccCCHHH-HHhhCCEEEEEeCCCCCCcCCCCCcccc--CceeHHHHHHHhhhcccc
Confidence 64 4333220000 000 00000112222 24789999999999 4788889986422 122221 11111111000
Q ss_pred -HHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 234 -LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 234 -~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
+.........+++|+|||+|++|+|+|..+...+.+ .|+++++.+.... .......+.|+++||+++++..+.
T Consensus 161 ~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~--~Vtvi~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~v~ 234 (352)
T PRK12770 161 YLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAE--KVYLAYRRTINEA----PAGKYEIERLIARGVEFLELVTPV 234 (352)
T ss_pred ccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeecchhhC----CCCHHHHHHHHHcCCEEeeccCce
Confidence 000000011257999999999999999999776543 2999987654211 122445567999999999999999
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEeec---c---------cccCCcceEEeccEEEEecCCCCCCCCCCC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ---P---------AIKGLESQIFEADLVLWTVGSKPLLPHVEP 380 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~---------~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~ 380 (538)
+++.++.. ..+.+... + ....++++.+++|.||+++|++|+..+..+
T Consensus 235 ~i~~~~~~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~ 293 (352)
T PRK12770 235 RIIGEGRV---------------------EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKE 293 (352)
T ss_pred eeecCCcE---------------------eEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhc
Confidence 98764321 12222100 0 001225678999999999999999766543
Q ss_pred CCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 381 ~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
. .+++++++|++.||+++++ +.|+||++|||+.. +..+..|++||+.+|.+|...|..
T Consensus 294 ~----~g~~~~~~g~i~vd~~~~t-~~~~vyaiGD~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 294 C----LGIELNRKGEIVVDEKHMT-SREGVFAAGDVVTG--------PSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred c----cCceecCCCcEeeCCCccc-CCCCEEEEcccccC--------cchHHHHHHHHHHHHHHHHHHHhc
Confidence 1 3577888899999999998 89999999999985 578899999999999999988864
No 60
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=4.3e-31 Score=253.85 Aligned_cols=299 Identities=20% Similarity=0.299 Sum_probs=234.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC----------cch-----hhhhcC------CCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK----------PML-----YELLSG------EVDA 136 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~----------p~~-----~~~~~g------~~~~ 136 (538)
..+||+|||+||+|..||..+++ .|++.++||++..++.. .++ +..+.. ..+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ------lGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~v 111 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ------LGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDV 111 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH------hcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccc
Confidence 45899999999999999999999 57799999998743322 111 111111 0111
Q ss_pred ------------------ccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEEE
Q 009310 137 ------------------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLV 196 (538)
Q Consensus 137 ------------------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lV 196 (538)
..+...+..++++..|.++.+.-.-++|... ++...|| ..+...++|
T Consensus 112 s~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V-------------~v~k~dg~~~ii~aKnIi 178 (506)
T KOG1335|consen 112 SSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKV-------------SVKKIDGEDQIIKAKNII 178 (506)
T ss_pred cceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceE-------------EEeccCCCceEEeeeeEE
Confidence 1122234556677788999887777776643 3444444 478999999
Q ss_pred EeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEE
Q 009310 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276 (538)
Q Consensus 197 lAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv 276 (538)
+|||+. .+++||+.-.--.+-+.+.++.+.+. +++++|||+|.+|+|+..-..+++.+ ||+|
T Consensus 179 iATGSe--V~~~PGI~IDekkIVSStgALsL~~v-------------Pk~~~viG~G~IGLE~gsV~~rLGse---VT~V 240 (506)
T KOG1335|consen 179 IATGSE--VTPFPGITIDEKKIVSSTGALSLKEV-------------PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVV 240 (506)
T ss_pred EEeCCc--cCCCCCeEecCceEEecCCccchhhC-------------cceEEEEcCceeeeehhhHHHhcCCe---EEEE
Confidence 999995 23456763221234455667777665 88999999999999999999998888 9999
Q ss_pred ecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCc
Q 009310 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356 (538)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 356 (538)
+-.+.+.+.++.+++..+++.|+++|++|+++++|..++.+++ +.|.+++.+..++ .
T Consensus 241 Ef~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d----------------------g~v~i~ve~ak~~-k 297 (506)
T KOG1335|consen 241 EFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD----------------------GPVEIEVENAKTG-K 297 (506)
T ss_pred EehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC----------------------CceEEEEEecCCC-c
Confidence 9999999999999999999999999999999999999998763 4677777766555 5
Q ss_pred ceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHH
Q 009310 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436 (538)
Q Consensus 357 g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~ 436 (538)
.++++||.+++++|.+|-+.-|. +...|+..|.+|++.||..+++ .+|+||+|||+... |.+++.|..
T Consensus 298 ~~tle~DvlLVsiGRrP~t~GLg---le~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~g--------pMLAhkAee 365 (506)
T KOG1335|consen 298 KETLECDVLLVSIGRRPFTEGLG---LEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLG--------PMLAHKAEE 365 (506)
T ss_pred eeEEEeeEEEEEccCcccccCCC---hhhcccccccccceeccccccc-cCCceEEecccCCc--------chhhhhhhh
Confidence 78899999999999999876554 3456899999999999999999 99999999999997 899999999
Q ss_pred HHHHHHHHHHHH
Q 009310 437 QADFAGWNLWAA 448 (538)
Q Consensus 437 qg~~aa~~i~~~ 448 (538)
||-.+...|...
T Consensus 366 egI~~VE~i~g~ 377 (506)
T KOG1335|consen 366 EGIAAVEGIAGG 377 (506)
T ss_pred hchhheeeeccc
Confidence 999998888753
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=1.1e-30 Score=293.37 Aligned_cols=309 Identities=17% Similarity=0.113 Sum_probs=207.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||||||||+||.+|++ .||+|||||+.+....... +. ++....+.++.....+.++..+++|..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar------~G~~VtVfE~~~~~GG~l~-yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV------EGFPVTVFEAFHDLGGVLR-YG-IPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH------CCCeEEEEeeCCCCCceEE-cc-CCCCcChHHHHHHHHHHHHhhcCeEEE
Confidence 346899999999999999999999 7899999999876443221 11 122222344444455667778999988
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
+..... .+++++.....||+||||||+. |+.+++||.+. ..+.+..+............
T Consensus 376 n~~vG~------------------dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl--~GV~~a~dfL~~~~~~~~~~ 435 (944)
T PRK12779 376 NFVVGK------------------TATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL--LGVMSANEFLTRVNLMRGLD 435 (944)
T ss_pred eEEecc------------------EEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcC--cCcEEHHHHHHHHHhhcccc
Confidence 754322 4666666566899999999995 88899999531 22334444332211111000
Q ss_pred Hh---ccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 236 RR---NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 236 ~~---~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
.. ......+++|+|||||++|+|+|..+.+.+.+ |+++.+.+.. .++ .....+.. ..+.||+++++..++
T Consensus 436 ~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~---Vtlv~rr~~~--~mp-a~~~e~~~-a~eeGV~~~~~~~p~ 508 (944)
T PRK12779 436 DDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN---VTIVYRRTKS--EMP-ARVEELHH-ALEEGINLAVLRAPR 508 (944)
T ss_pred ccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEecCcc--ccc-ccHHHHHH-HHHCCCEEEeCcceE
Confidence 00 00011368999999999999999999988875 9999876531 122 11122222 346799999999999
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEe---ecc-cc-------cCCcceEEeccEEEEecCCCCCCCCCCCC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQP-AI-------KGLESQIFEADLVLWTVGSKPLLPHVEPP 381 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~-~~-------~~~~g~~l~~D~vI~a~G~~p~~~~l~~~ 381 (538)
++..+++.. . + .++.+. +.. .. ..++..++++|+||+|+|+.|+..+...
T Consensus 509 ~i~~d~~~~-~-----V------------~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~- 569 (944)
T PRK12779 509 EFIGDDHTH-F-----V------------THALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDA- 569 (944)
T ss_pred EEEecCCCC-E-----E------------EEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhc-
Confidence 997542100 0 0 111111 000 00 1123467999999999999999543221
Q ss_pred CCccCCCCcCCCCCeeeCC-CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 382 NNRLHDLPLNARGQAETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 382 ~~~~~~~~l~~~G~i~vd~-~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
..+++++++|.|.||+ +++| +.|+|||+|||+.. +.++..|+.+|+.||.+|...+.-
T Consensus 570 ---~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G--------~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 570 ---EPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARG--------GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred ---ccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCC--------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2367788899999996 5777 89999999999975 568999999999999999988764
No 62
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.5e-30 Score=244.60 Aligned_cols=309 Identities=20% Similarity=0.283 Sum_probs=230.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc----------ccCcchhhh-h---------cCCCC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF----------VFKPMLYEL-L---------SGEVD 135 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~----------~~~p~~~~~-~---------~g~~~ 135 (538)
....+|.+|||||.+|+++|++.+. -|.++.|+|..-.+ +-+.|++.. . .|...
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~------~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~ 90 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAAS------HGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPI 90 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHh------cCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcc
Confidence 3456999999999999999999998 57799999987321 111122110 0 01111
Q ss_pred Ccccccc------------------HHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCce--EEEeeEE
Q 009310 136 AWEIAPR------------------FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWL 195 (538)
Q Consensus 136 ~~~~~~~------------------~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~yD~l 195 (538)
......+ |...+.+..|+++.++..-+++... +|...++. .+.+.++
T Consensus 91 ~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v-------------~V~~~d~~~~~Ytak~i 157 (478)
T KOG0405|consen 91 NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEV-------------EVEVNDGTKIVYTAKHI 157 (478)
T ss_pred ccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCce-------------EEEecCCeeEEEecceE
Confidence 0111111 2233445678888888777766543 46666664 3678999
Q ss_pred EEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEE
Q 009310 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQA 275 (538)
Q Consensus 196 VlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtl 275 (538)
++|||++|.+|.|||.+ +.. +.+.+..+.+. +++++|||+|++++|+|.-++.++.+ +++
T Consensus 158 LIAtGg~p~~PnIpG~E-~gi---dSDgff~Lee~-------------Pkr~vvvGaGYIavE~Agi~~gLgse---thl 217 (478)
T KOG0405|consen 158 LIATGGRPIIPNIPGAE-LGI---DSDGFFDLEEQ-------------PKRVVVVGAGYIAVEFAGIFAGLGSE---THL 217 (478)
T ss_pred EEEeCCccCCCCCCchh-hcc---ccccccchhhc-------------CceEEEEccceEEEEhhhHHhhcCCe---eEE
Confidence 99999999999999963 222 34445555555 89999999999999999999999888 999
Q ss_pred EecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCC
Q 009310 276 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (538)
Q Consensus 276 v~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 355 (538)
+-|.+.++..+++.+++.+.+.++.+||+++.++.++++..... +..+... .
T Consensus 218 fiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~-----------------------g~~~~i~-----~ 269 (478)
T KOG0405|consen 218 FIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD-----------------------GLELVIT-----S 269 (478)
T ss_pred EEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCC-----------------------CceEEEE-----e
Confidence 99999999999999999999999999999999999999987652 2222111 1
Q ss_pred cceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHH
Q 009310 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435 (538)
Q Consensus 356 ~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~ 435 (538)
.++...+|.++||+|..|++.-+... ..|+++++.|.|.||++.+| +.|+||++||++.- ..+...|+
T Consensus 270 ~~~i~~vd~llwAiGR~Pntk~L~le---~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk--------~~LTPVAi 337 (478)
T KOG0405|consen 270 HGTIEDVDTLLWAIGRKPNTKGLNLE---NVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK--------INLTPVAI 337 (478)
T ss_pred ccccccccEEEEEecCCCCcccccch---hcceeeCCCCCEEEeccccC-CCCceEEeccccCc--------EecchHHH
Confidence 45556699999999999997655433 45899999999999999999 99999999999985 56778899
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceecCcccEE
Q 009310 436 QQADFAGWNLWAAINDRPLLPFRFQNLGEMM 466 (538)
Q Consensus 436 ~qg~~aa~~i~~~l~~~~~~p~~~~~~g~~~ 466 (538)
..|+.+++.+... +++.+ ..|.+..+++
T Consensus 338 aagr~la~rlF~~--~~~~k-ldY~nVp~vV 365 (478)
T KOG0405|consen 338 AAGRKLANRLFGG--GKDTK-LDYENVPCVV 365 (478)
T ss_pred hhhhhHHHHhhcC--CCCCc-cccccCceEE
Confidence 9999999988753 22322 3566665554
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=291.93 Aligned_cols=309 Identities=17% Similarity=0.119 Sum_probs=203.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||||||||+||..|++ .|++|+|||+.+..+.... + -++....+.++.....+.+...++++..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~------~G~~VtV~E~~~~~GG~l~-~-gip~~rl~~e~~~~~~~~l~~~Gv~~~~~ 500 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK------YGVDVTVYEALHVVGGVLQ-Y-GIPSFRLPRDIIDREVQRLVDIGVKIETN 500 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCcceee-c-cCCccCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 45899999999999999999999 6889999999876432211 1 11122223444455556677889999887
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCce-EEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHHHH--
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-- 233 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~-- 233 (538)
.+...+ ++.++.. ...||+||||||+. |+.+++||... ..+.+..+.+........
T Consensus 501 ~~vg~~------------------~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l--~gV~~a~~fL~~~~~~~~~~ 560 (1006)
T PRK12775 501 KVIGKT------------------FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA--GQVYSANEFLTRVNLMGGDK 560 (1006)
T ss_pred CccCCc------------------cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC--CCcEEHHHHHHHHHhcCccc
Confidence 543221 2222111 24699999999995 88899999531 122233333322211000
Q ss_pred HHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeE
Q 009310 234 LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313 (538)
Q Consensus 234 ~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~ 313 (538)
..........+++|+|||||++|+|+|..+.+.+.+. |+++.+.... .++.. ....+.+++.||++++++.+.+
T Consensus 561 ~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~--Vtiv~rr~~~--em~a~--~~e~~~a~eeGI~~~~~~~p~~ 634 (1006)
T PRK12775 561 FPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPT--VRCVYRRSEA--EAPAR--IEEIRHAKEEGIDFFFLHSPVE 634 (1006)
T ss_pred cccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCE--EEEEeecCcc--cCCCC--HHHHHHHHhCCCEEEecCCcEE
Confidence 0000001123789999999999999999888776543 7877765432 11111 1123457789999999999999
Q ss_pred EeccccccccccCCCCCcccccccccCCCceEEe---ecccc--------cCCcceEEeccEEEEecCCCCCCCCCCCCC
Q 009310 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQPAI--------KGLESQIFEADLVLWTVGSKPLLPHVEPPN 382 (538)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~--------~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~ 382 (538)
+..+++... .++.+. +...+ ..++..++++|+||+++|+.|+..++...
T Consensus 635 i~~~~~G~v-------------------~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~- 694 (1006)
T PRK12775 635 IYVDAEGSV-------------------RGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST- 694 (1006)
T ss_pred EEeCCCCeE-------------------EEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-
Confidence 864321100 122221 10000 01133579999999999999997665431
Q ss_pred CccCCCCcCCCCCeeeCC-----CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 383 NRLHDLPLNARGQAETDE-----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 383 ~~~~~~~l~~~G~i~vd~-----~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
.++.++.+|.|.+|+ +++| +.|+|||+||++.. +.++..|+.+|+.+|.+|...+.+.
T Consensus 695 ---~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G--------~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 695 ---PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTG--------GATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred ---CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCC--------ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 257788889999996 6787 99999999999975 6788999999999999999999765
No 64
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=3.6e-29 Score=265.19 Aligned_cols=314 Identities=19% Similarity=0.173 Sum_probs=197.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||||+||+++|..|++ .|++|+|||+.+....... +. +.+.....++.....++++..+++++.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~------~g~~V~v~e~~~~~gG~l~-~g-ip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 213 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR------AGHTVTVFEREDRCGGLLM-YG-IPNMKLDKAIVDRRIDLLSAEGIDFVTN 213 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH------cCCeEEEEecCCCCCceee-cc-CCCccCCHHHHHHHHHHHHhCCCEEECC
Confidence 44799999999999999999998 6789999999876432111 00 1111111223333345566778998876
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccc-cCcCCCChHHHHHHHHHHHH--
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAE-FAFPFSTLEDACRVDRKLSE-- 233 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~-~~~~~~~~~d~~~~~~~l~~-- 233 (538)
.....+ +.. +.....||.||+|||+. |..+++||.+. .++ ..-+..........
T Consensus 214 ~~v~~~------------------~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~---~~~~~l~~~~~~~~~~ 271 (485)
T TIGR01317 214 TEIGVD------------------ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIH---YAMEFLPSATKALLGK 271 (485)
T ss_pred CEeCCc------------------cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcE---eHHHHHHHHhhhhccc
Confidence 433221 111 11235799999999998 88889999632 222 11111111110000
Q ss_pred -HHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCC-----hh------hHHHHHHHHHhC
Q 009310 234 -LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT-----PG------NREAALKVLSAR 301 (538)
Q Consensus 234 -~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~-----~~------~~~~~~~~l~~~ 301 (538)
...-......+++|+|||+|++|+|+|..+.+.+... |++++..+..+.... +. ......+..+..
T Consensus 272 ~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~--V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~ 349 (485)
T TIGR01317 272 DFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAAS--VHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHY 349 (485)
T ss_pred cccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCE--EEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhc
Confidence 0000000123689999999999999988877765432 999987765443211 11 112233334446
Q ss_pred CCEE-EcCceeeEEeccccccccccCCCCCcccccccccCCCceEE---eecccc--------cCCcceEEeccEEEEec
Q 009310 302 KVQL-VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL---ELQPAI--------KGLESQIFEADLVLWTV 369 (538)
Q Consensus 302 gV~v-~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~--------~~~~g~~l~~D~vI~a~ 369 (538)
||.+ +++..+.+|..++... + .++.+ ++...+ ..++..++++|+||+++
T Consensus 350 gv~~~~~~~~~~~i~~~~~g~-------v------------~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~Ai 410 (485)
T TIGR01317 350 GRDPREYSILTKEFIGDDEGK-------V------------TALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAM 410 (485)
T ss_pred CccceEEecCcEEEEEcCCCe-------E------------EEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEcc
Confidence 7754 4677788886542100 0 11221 110000 11234579999999999
Q ss_pred CCC-CCCCCCCCCCCccCCCCcCCCCCeee-CCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 370 GSK-PLLPHVEPPNNRLHDLPLNARGQAET-DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 370 G~~-p~~~~l~~~~~~~~~~~l~~~G~i~v-d~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
|.. |+++++... +++++++|++.+ |++++| +.|+|||+|||+.. +.++..|+.+|+.+|.+|..
T Consensus 411 G~~~p~~~~~~~~-----gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~g--------~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 411 GFVGPEQILLDDF-----GVKKTRRGNISAGYDDYST-SIPGVFAAGDCRRG--------QSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred CcCCCcccccccc-----CcccCCCCCEEecCCCceE-CCCCEEEeeccCCC--------cHHHHHHHHHHHHHHHHHHH
Confidence 996 887777643 577788899865 578888 99999999999875 56788999999999999999
Q ss_pred HHCCCCCCC
Q 009310 448 AINDRPLLP 456 (538)
Q Consensus 448 ~l~~~~~~p 456 (538)
.+.++...|
T Consensus 477 ~L~g~~~~~ 485 (485)
T TIGR01317 477 YLMGSSVLP 485 (485)
T ss_pred HHhcCCCCC
Confidence 998876554
No 65
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=1.1e-28 Score=260.54 Aligned_cols=304 Identities=17% Similarity=0.157 Sum_probs=196.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||||||||++|..|++ .|++|+|+|+.+....... +. +.......++.....+++...+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~------~G~~V~i~e~~~~~gG~l~-~g-ip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 211 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR------AGVQVVVFDRHPEIGGLLT-FG-IPSFKLDKAVLSRRREIFTAMGIEFHLN 211 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCCCceee-ec-CccccCCHHHHHHHHHHHHHCCCEEECC
Confidence 55899999999999999999998 6889999999886533211 11 1111112333334456667788888765
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC-CCCCCCCccccCcCCCChHHHHHHHH-HHHHHH
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDR-KLSELE 235 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~-~~p~ipG~~~~~~~~~~~~d~~~~~~-~l~~~~ 235 (538)
..... .+..++. ...||.||+|||+.+ ..+++||.+.. .+.+..+...... .+..+.
T Consensus 212 ~~v~~------------------~~~~~~~-~~~~D~vilAtGa~~~~~~~i~g~~~~--gV~~a~~~l~~~~~~~~~~~ 270 (467)
T TIGR01318 212 CEVGR------------------DISLDDL-LEDYDAVFLGVGTYRSMRGGLPGEDAP--GVLQALPFLIANTRQLMGLP 270 (467)
T ss_pred CEeCC------------------ccCHHHH-HhcCCEEEEEeCCCCCCcCCCCCcCCC--CcEEHHHHHHHHHHHhcCCC
Confidence 32110 1112221 347999999999986 45678886421 1112222111100 010000
Q ss_pred Hhc---cCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc-CCCCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 236 RRN---FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 236 ~~~---~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
... .....+++++|||+|.+|+|+|..+.+.+.+. |+++.+.+.. ++.... ..+.+++.||++++++.+
T Consensus 271 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~--Vtvv~r~~~~~~~~~~~-----e~~~~~~~GV~~~~~~~~ 343 (467)
T TIGR01318 271 ESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAAS--VTCAYRRDEANMPGSRR-----EVANAREEGVEFLFNVQP 343 (467)
T ss_pred ccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCe--EEEEEecCcccCCCCHH-----HHHHHHhcCCEEEecCCc
Confidence 000 00113689999999999999999988776422 9999986643 333222 234567889999999999
Q ss_pred eEEeccccccccccCCCCCcccccccccCCCceEEee-ccc---c--------cCCcceEEeccEEEEecCCCCCC-CCC
Q 009310 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPA---I--------KGLESQIFEADLVLWTVGSKPLL-PHV 378 (538)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~---~--------~~~~g~~l~~D~vI~a~G~~p~~-~~l 378 (538)
.++..+++... .++++.. ... . ..++.+.+++|.||+++|++|+. .++
T Consensus 344 ~~i~~~~~g~v-------------------~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~ 404 (467)
T TIGR01318 344 VYIECDEDGRV-------------------TGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWL 404 (467)
T ss_pred EEEEECCCCeE-------------------EEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccc
Confidence 99965321100 1222210 000 0 11245689999999999999984 444
Q ss_pred CCCCCccCCCCcCCCCCeeeC----CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 379 EPPNNRLHDLPLNARGQAETD----ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 379 ~~~~~~~~~~~l~~~G~i~vd----~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
.. .+++++++|++.|| .++++ +.|+||++|||+.. +.++..|+.+|+.+|.+|...+.
T Consensus 405 ~~-----~gl~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~--------~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 405 AG-----HGITLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRG--------ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred cc-----cCccCCCCCCEEeCCccccCccC-CCCCEEEECCcCCC--------ccHHHHHHHHHHHHHHHHHHHhc
Confidence 32 25778888999999 67887 89999999999975 56788999999999999998763
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=9.2e-29 Score=271.85 Aligned_cols=303 Identities=16% Similarity=0.132 Sum_probs=196.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||||||||+||..|++ .|++|+|||+.+........ . .++...+.++.....+.++..++++..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~------~G~~V~V~E~~~~~GG~l~~-g-ip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 397 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR------NGVAVTVYDRHPEIGGLLTF-G-IPAFKLDKSLLARRREIFSAMGIEFELN 397 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCceeee-c-CCCccCCHHHHHHHHHHHHHCCeEEECC
Confidence 45899999999999999999998 68899999998764432111 1 1111112333333445566778888765
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC-CCCCCCCccccCcCCCChHHHHHHHHHHHHHHH
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELER 236 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~-~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~ 236 (538)
.....+ +..++. ...||+|++|||+.. ..+.+||.... .+.+.-+. +.........
T Consensus 398 ~~v~~~------------------i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~--Gv~~a~~~--l~~~~~~~~~ 454 (654)
T PRK12769 398 CEVGKD------------------ISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAP--GVYDALPF--LIANTKQVMG 454 (654)
T ss_pred CEeCCc------------------CCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCC--CeEEhHHH--HHHHHhhhcc
Confidence 422111 111111 246999999999864 45678885321 11111111 1111111000
Q ss_pred hc------cCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc-CCCCChhhHHHHHHHHHhCCCEEEcCc
Q 009310 237 RN------FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 237 ~~------~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
.. .....+++|+|||+|++|+|+|..+.+.+.+. |+++.+.+.. ++..+ ...+.+++.||+++++.
T Consensus 455 ~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~--Vt~i~~~~~~~~~~~~-----~e~~~~~~~Gv~~~~~~ 527 (654)
T PRK12769 455 LEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASN--VTCAYRRDEANMPGSK-----KEVKNAREEGANFEFNV 527 (654)
T ss_pred CccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCe--EEEeEecCCCCCCCCH-----HHHHHHHHcCCeEEecc
Confidence 00 00123689999999999999999887776532 9998876543 33222 23456888999999999
Q ss_pred eeeEEeccccccccccCCCCCcccccccccCCCceEEe-eccc---c--------cCCcceEEeccEEEEecCCCCCC-C
Q 009310 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-LQPA---I--------KGLESQIFEADLVLWTVGSKPLL-P 376 (538)
Q Consensus 310 ~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~---~--------~~~~g~~l~~D~vI~a~G~~p~~-~ 376 (538)
.++++..+++... .+|++. .... + ..++..++++|+||+|+|+.|+. .
T Consensus 528 ~~~~i~~~~~g~v-------------------~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~ 588 (654)
T PRK12769 528 QPVALELNEQGHV-------------------CGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMP 588 (654)
T ss_pred CcEEEEECCCCeE-------------------EEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccc
Confidence 9999864321100 122221 0000 0 01234579999999999999985 3
Q ss_pred CCCCCCCccCCCCcCCCCCeeeCC----CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 377 HVEPPNNRLHDLPLNARGQAETDE----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 377 ~l~~~~~~~~~~~l~~~G~i~vd~----~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
++.. .+++++++|.|.||+ +++| +.|+|||+||++.. +.++..|+.+|+.+|.+|.+.|..
T Consensus 589 ~~~~-----~gl~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g--------~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 589 WLES-----HGVTVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVRG--------ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cccc-----cCCcCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCCC--------CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 4443 367889999999985 4788 99999999999875 568899999999999999998865
No 67
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=2.7e-28 Score=266.57 Aligned_cols=308 Identities=17% Similarity=0.109 Sum_probs=192.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||+|+||+++|..|++ .|++|+|||+++........ . ++....+.++.....+.++..+++++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~------~G~~v~vie~~~~~gG~~~~-~-i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT------MGYEVTVYESLSKPGGVMRY-G-IPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCceEee-c-CCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 455899999999999999999998 68899999998865332211 1 111111222333334556677888877
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
+.....+ +..++ ....||+||+|||+. ++.+++||.+... .+...+....+...+.
T Consensus 353 ~~~v~~~------------------~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~g-v~~a~~~l~~~~~~~~--- 409 (604)
T PRK13984 353 NTRVGKD------------------IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPD-VIQALPLLREIRDYLR--- 409 (604)
T ss_pred CCEeCCc------------------CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcC-eEeHHHHHHHHHhhhc---
Confidence 6432211 11111 135799999999997 6788899964221 1112222222221111
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHHHHh---cCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~---~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
........+++|+|||||++|+|+|..+.+++.. ...|+++.... ....++.... .+.+ +.+.||+++++..+.
T Consensus 410 ~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~~~~~~~~-e~~~-~~~~GV~i~~~~~~~ 486 (604)
T PRK13984 410 GEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFEEMPADME-EIEE-GLEEGVVIYPGWGPM 486 (604)
T ss_pred cCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc-CcccCCCCHH-HHHH-HHHcCCEEEeCCCCE
Confidence 0000012258999999999999999999876431 01267764321 2222222222 2222 346799999999888
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEee----cc-------cccCCcceEEeccEEEEecCCCCCCCCCCCC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL----QP-------AIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~-------~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~ 381 (538)
++..+++.. .++.+.. .+ ....++++.+++|.||+++|++|+++++...
T Consensus 487 ~i~~~~g~v--------------------~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~ 546 (604)
T PRK13984 487 EVVIENDKV--------------------KGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEE 546 (604)
T ss_pred EEEccCCEE--------------------EEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhh
Confidence 886532111 1222210 00 0011245689999999999999998876531
Q ss_pred CCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 382 ~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
. ..++.. ++|+|.||+++|| +.|+|||+|||+.. + ....|+.+|+.+|.+|...|.+
T Consensus 547 ~--~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~--------~-~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 547 L--KSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHG--------P-DIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred h--ccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCc--------h-HHHHHHHHHHHHHHHHHHHhcc
Confidence 1 012333 4688999999998 99999999999985 3 4578999999999999998865
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=2.7e-27 Score=259.17 Aligned_cols=306 Identities=14% Similarity=0.112 Sum_probs=196.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||||||||++|..|++ .|++|+|||+.+..+... .+......+ +.++.....+++...+++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~------~G~~Vtv~e~~~~~GG~l-~~gip~~~l-~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR------AGVQVDVFDRHPEIGGML-TFGIPPFKL-DKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH------cCCcEEEEeCCCCCCCee-eccCCcccC-CHHHHHHHHHHHHHCCeEEEcC
Confidence 46899999999999999999998 688999999988643221 111111111 1233333445667788888776
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC-CCCCCCCccccCcCCCChHHHHH-HHHHHHHHH
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACR-VDRKLSELE 235 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~-~~p~ipG~~~~~~~~~~~~d~~~-~~~~l~~~~ 235 (538)
..... .++.++. ...||+|++|||+.+ ..+++||.+.. .+.+.-+... ....+..+.
T Consensus 381 ~~v~~------------------~~~~~~l-~~~~DaV~latGa~~~~~~~i~g~~~~--gv~~a~~~l~~~~~~~~~~~ 439 (639)
T PRK12809 381 CEIGR------------------DITFSDL-TSEYDAVFIGVGTYGMMRADLPHEDAP--GVIQALPFLTAHTRQLMGLP 439 (639)
T ss_pred CccCC------------------cCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCccC--CcEeHHHHHHHHHHhhccCc
Confidence 42111 1122221 346999999999974 56778885321 1111111111 000110000
Q ss_pred Hh-c--cCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc-CCCCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 236 RR-N--FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 236 ~~-~--~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.. . .....+++|+|||+|.+++|.|..+.+.+.+. |+++.+.+.. ++....++ ..+++.||++++++.+
T Consensus 440 ~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~--Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~~~~~~~ 512 (639)
T PRK12809 440 ESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAAS--VTCAYRRDEVSMPGSRKEV-----VNAREEGVEFQFNVQP 512 (639)
T ss_pred cccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCe--EEEeeecCcccCCCCHHHH-----HHHHHcCCeEEeccCC
Confidence 00 0 01123689999999999999999887776432 9999886544 33222222 2357889999999999
Q ss_pred eEEeccccccccccCCCCCcccccccccCCCceEEe-eccc-----------ccCCcceEEeccEEEEecCCCCCC-CCC
Q 009310 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-LQPA-----------IKGLESQIFEADLVLWTVGSKPLL-PHV 378 (538)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-----------~~~~~g~~l~~D~vI~a~G~~p~~-~~l 378 (538)
++|..+++... .++.+. .... ...++...+++|+||+++|+.|+. .++
T Consensus 513 ~~i~~~~~g~v-------------------~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~ 573 (639)
T PRK12809 513 QYIACDEDGRL-------------------TAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWL 573 (639)
T ss_pred EEEEECCCCeE-------------------EEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccc
Confidence 99975321100 122211 1000 011245689999999999999974 344
Q ss_pred CCCCCccCCCCcCCCCCeeeCC----CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 379 EPPNNRLHDLPLNARGQAETDE----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 379 ~~~~~~~~~~~l~~~G~i~vd~----~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
.. .+++++++|+|.+|+ +++| +.|+|||+||++.. +.++..|+.+|+.+|.+|...+.++
T Consensus 574 ~~-----~gl~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g--------~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 574 QG-----SGIKLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHG--------ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred cc-----cCcccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCCC--------chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 32 357888899999985 4788 89999999999975 5678899999999999999988654
No 69
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.95 E-value=1.9e-27 Score=223.65 Aligned_cols=341 Identities=18% Similarity=0.222 Sum_probs=241.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEE
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (538)
.....+|+|||||.+|+++|..+.+.. ..-+|.|+|+.+.|+|+|.+..+-+|..+.+.-.....+++ ..+..++
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~li-P~~a~wi 110 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLI-PKGATWI 110 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccc-cCCcHHH
Confidence 346689999999999999999998754 44599999999999999999877777666555444555544 4567778
Q ss_pred EeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccc-----cCcCCCChHHHHHHHHH
Q 009310 156 KDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAE-----FAFPFSTLEDACRVDRK 230 (538)
Q Consensus 156 ~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~-----~~~~~~~~~d~~~~~~~ 230 (538)
+..|+.++|+.+ +|.+.+|++|.||++|+|+|-.-++..|+|+.| .+.+.++...+.+..+.
T Consensus 111 ~ekv~~f~P~~N-------------~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~ 177 (446)
T KOG3851|consen 111 KEKVKEFNPDKN-------------TVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKE 177 (446)
T ss_pred HHHHHhcCCCcC-------------eEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHH
Confidence 889999999887 589999999999999999999988888998743 24455666666666666
Q ss_pred HHHHHHhccCCCCCC-eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC--CccCCCCChhhHHHHHHHHHhCCCEEEc
Q 009310 231 LSELERRNFGKDSLI-RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE--TTICPTGTPGNREAALKVLSARKVQLVL 307 (538)
Q Consensus 231 l~~~~~~~~~~~~~~-~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~--~~~l~~~~~~~~~~~~~~l~~~gV~v~~ 307 (538)
+.++..+..--..+. .|-..|+-.-.+-++....+.-..+..+.++-.. +.++ .-....+.+++..++++|++..
T Consensus 178 ~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF--gVk~Y~~AL~k~~~~rni~vn~ 255 (446)
T KOG3851|consen 178 LMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF--GVKHYADALEKVIQERNITVNY 255 (446)
T ss_pred HHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcccee--cHHHHHHHHHHHHHhcceEeee
Confidence 666544331100011 1222233333333333332222212224444332 2221 1256778888999999999999
Q ss_pred CceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCC
Q 009310 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 387 (538)
Q Consensus 308 ~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~ 387 (538)
...+.++..++ ...+++.-+ +.+..++++++++-+....++. +.+..+.
T Consensus 256 krnLiEV~~~~-----------------------~~AvFe~L~--kPG~t~ei~yslLHv~Ppms~p-e~l~~s~----- 304 (446)
T KOG3851|consen 256 KRNLIEVRTND-----------------------RKAVFENLD--KPGVTEEIEYSLLHVTPPMSTP-EVLANSD----- 304 (446)
T ss_pred ccceEEEeccc-----------------------hhhHHHhcC--CCCceeEEeeeeeeccCCCCCh-hhhhcCc-----
Confidence 99999998866 344454332 2235578899999999998887 5554433
Q ss_pred CCcCCCCCeeeC-CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCceecCcccEE
Q 009310 388 LPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 466 (538)
Q Consensus 388 ~~l~~~G~i~vd-~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p~~~~~~g~~~ 466 (538)
-.|..|++.|| .++|++.+||||+||||.+.+ ..+++..+..|..++-+||...++|+.+. ..|..+.+|-
T Consensus 305 -~adktGfvdVD~~TlQs~kypNVFgiGDc~n~P------nsKTaAAvaaq~~vv~~nl~~~m~g~~pt-~~ydGYtSCP 376 (446)
T KOG3851|consen 305 -LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLP------NSKTAAAVAAQSPVVDKNLTQVMQGKRPT-MKYDGYTSCP 376 (446)
T ss_pred -ccCcccceecChhhhccccCCCceeeccccCCC------chhhHHHHHhcCchhhhhHHHHhcCCCcc-eeecCcccCc
Confidence 25788999999 899999999999999999984 36788888899999999999999998653 3677776665
Q ss_pred EecCCCeee
Q 009310 467 ILGRNDAAV 475 (538)
Q Consensus 467 ~lG~~~~~~ 475 (538)
.+-.++-+.
T Consensus 377 lvtgy~k~i 385 (446)
T KOG3851|consen 377 LVTGYNKVI 385 (446)
T ss_pred eeeccceEE
Confidence 544344433
No 70
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=5.2e-26 Score=237.65 Aligned_cols=320 Identities=17% Similarity=0.144 Sum_probs=196.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||||||||+||..|++. .+|++|+|||+.+..+... .+...+.......+...+..++...+++|+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGlv-r~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGLV-RSGVAPDHPETKNVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcceE-eeccCCCcchhHHHHHHHHHHHHHCCeEEEc
Confidence 4568999999999999999999862 2689999999998643322 2222233333344455566666667788776
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC-CCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~-~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
+....- .+++++. ...||+||||||+.+ +.+++||.+.. .+.+..+............
T Consensus 99 nv~vg~------------------dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~--gV~~a~~fl~~~ng~~d~~ 157 (491)
T PLN02852 99 NVTLGR------------------DVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLP--GVLSAREFVWWYNGHPDCV 157 (491)
T ss_pred CEEECc------------------cccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCC--CeEEHHHHHHHhhcchhhh
Confidence 432111 2444443 347999999999985 67889996321 2222333221111000000
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHH----------------HHh--cCcEEEEecCCccCCCC-ChhhHH----
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSER----------------LEE--KGIVQAINVETTICPTG-TPGNRE---- 292 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~----------------~~~--~~~Vtlv~~~~~~l~~~-~~~~~~---- 292 (538)
........+++|+|||+|++|+|+|..|.+. ... ...|+++.|....-..+ ..++++
T Consensus 158 ~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 158 HLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 0000011268999999999999999998764 111 12388888865321111 111111
Q ss_pred -----------------------------HHHHHH----Hh---------CCCEEEcCceeeEEeccccccccccCCCCC
Q 009310 293 -----------------------------AALKVL----SA---------RKVQLVLGYFVRCIRRVGEFEASVKQPESG 330 (538)
Q Consensus 293 -----------------------------~~~~~l----~~---------~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~ 330 (538)
...+.| .+ ++|.+++.....+|..+++....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v------ 311 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHV------ 311 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcE------
Confidence 011122 12 579999999999987421000000
Q ss_pred cccccccccCCCceEEeec---cc--------ccCCcceEEeccEEEEecCCC--CCCCC-CCCCCCccCCCCcCCCCCe
Q 009310 331 AIPNIAADKNSDKYILELQ---PA--------IKGLESQIFEADLVLWTVGSK--PLLPH-VEPPNNRLHDLPLNARGQA 396 (538)
Q Consensus 331 ~~~~~~~~~~~~~v~~~~~---~~--------~~~~~g~~l~~D~vI~a~G~~--p~~~~-l~~~~~~~~~~~l~~~G~i 396 (538)
.++++... .. ..+++.+.++||.||.++|++ |...+ +.. ..++..+.+|+|
T Consensus 312 -----------~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~----~~gv~~n~~G~V 376 (491)
T PLN02852 312 -----------AGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDH----KRGVVPNVHGRV 376 (491)
T ss_pred -----------EEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcccc----CcCeeECCCceE
Confidence 23333211 00 012244579999999999998 55442 221 224667888999
Q ss_pred eeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 397 ~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.+|+.+++ +.|+|||+|||...+ ...+..++.+|..++.+|...+..
T Consensus 377 ~~d~~~~T-~ipGvyAaGDi~~Gp-------~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 377 LSSASGAD-TEPGLYVVGWLKRGP-------TGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred EeCCCCcc-CCCCEEEeeeEecCC-------CCeeeecHhhHHHHHHHHHHHHHc
Confidence 99988877 899999999999852 237778999999999999998765
No 71
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=1.6e-26 Score=250.32 Aligned_cols=301 Identities=22% Similarity=0.189 Sum_probs=193.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
...++|+|||+||+||++|..|++ .|++|+++|+.+.+..... +. +.+...+.++.....+.+.+.++++..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~------~G~~V~v~e~~~~~GG~l~-~g-ip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR------MGHAVTIFEAGPKLGGMMR-YG-IPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCCeee-ec-CCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 456899999999999999999998 6789999999887543211 11 111111122222223345567777765
Q ss_pred eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC-CCCCCCCccccCcCCCChHHHHHHHHHHHHHH
Q 009310 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (538)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~-~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~ 235 (538)
+.....+.. .+. ....||+||+|||+.. ....++|.... .....-+ +........
T Consensus 207 ~~~~~~~~~------------------~~~-~~~~~D~Vi~AtG~~~~~~~~i~g~~~~--gv~~~~~---~l~~~~~~~ 262 (564)
T PRK12771 207 GVRVGEDIT------------------LEQ-LEGEFDAVFVAIGAQLGKRLPIPGEDAA--GVLDAVD---FLRAVGEGE 262 (564)
T ss_pred CCEECCcCC------------------HHH-HHhhCCEEEEeeCCCCCCcCCCCCCccC--CcEEHHH---HHHHhhccC
Confidence 532111100 000 1225999999999874 45567774321 1111111 111111000
Q ss_pred HhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc-CCCCChhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 236 ~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
....+++|+|||+|.+++|.+..+.+++.. .|+++.+.+.. ++.. .. ..+...+.||+++++..+.++
T Consensus 263 ----~~~~gk~v~ViGgg~~a~d~a~~a~~lga~--~v~ii~r~~~~~~~~~----~~-~~~~a~~~GVki~~~~~~~~i 331 (564)
T PRK12771 263 ----PPFLGKRVVVIGGGNTAMDAARTARRLGAE--EVTIVYRRTREDMPAH----DE-EIEEALREGVEINWLRTPVEI 331 (564)
T ss_pred ----CcCCCCCEEEECChHHHHHHHHHHHHcCCC--EEEEEEecCcccCCCC----HH-HHHHHHHcCCEEEecCCcEEE
Confidence 112268999999999999999888777632 28888876532 2221 12 223455689999999999999
Q ss_pred eccccccccccCCCCCcccccccccCCCceE---Eeec-cccc------CCcceEEeccEEEEecCCCCCCCCCCCCCCc
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYI---LELQ-PAIK------GLESQIFEADLVLWTVGSKPLLPHVEPPNNR 384 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~-~~~~------~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~ 384 (538)
..+++.. .+++ ++.. .... .++..++++|+||+|+|+.|+.+++...
T Consensus 332 ~~~~~~~--------------------~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~--- 388 (564)
T PRK12771 332 EGDENGA--------------------TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESV--- 388 (564)
T ss_pred EcCCCCE--------------------EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhc---
Confidence 7643211 0111 1110 0000 2244689999999999999998877642
Q ss_pred cCCCCcCCCCCeeeCC-CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 009310 385 LHDLPLNARGQAETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 454 (538)
Q Consensus 385 ~~~~~l~~~G~i~vd~-~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~ 454 (538)
.++. +++|+|.||+ ++++ +.|+||++|||+.. +.++..|+.||+.+|.+|.+.+.+++.
T Consensus 389 -~gl~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g--------~~~v~~Av~~G~~aA~~i~~~L~g~~~ 448 (564)
T PRK12771 389 -PGVE-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPG--------PRTVTTAIGHGKKAARNIDAFLGGEPY 448 (564)
T ss_pred -cCcc-cCCCCEEeCCCCccC-CCCCEEeccCcCCC--------chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2455 7789999997 6666 99999999999975 678999999999999999999988754
No 72
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.4e-27 Score=222.01 Aligned_cols=306 Identities=21% Similarity=0.289 Sum_probs=211.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcC---CCC---c------------ccCcchhhhh-------
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ---SER---F------------VFKPMLYELL------- 130 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~---~~~---~------------~~~p~~~~~~------- 130 (538)
....+|.+|||||.+||+||.+++.+ |.+|.++|- .+. + +-+.|....+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~------G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~d 89 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADL------GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHD 89 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhc------CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHH
Confidence 34569999999999999999999994 669999984 221 0 0000111111
Q ss_pred ---cCCC-CCccccccHHHHh-------cc----CCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEee
Q 009310 131 ---SGEV-DAWEIAPRFADLL-------AN----TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYD 193 (538)
Q Consensus 131 ---~g~~-~~~~~~~~~~~~~-------~~----~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD 193 (538)
-|.. +...+..++..+. +. +.++.....|..++.-..+ ++...+ ..+..++ +.+.++
T Consensus 90 a~kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeF-v~~h~I-----~at~~~gk~~~~ta~ 163 (503)
T KOG4716|consen 90 ARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEF-VDPHKI-----KATNKKGKERFLTAE 163 (503)
T ss_pred HHhhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceee-cccceE-----EEecCCCceEEeecc
Confidence 1111 1112333333222 11 1234444455555443332 111111 1222233 468899
Q ss_pred EEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcE
Q 009310 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIV 273 (538)
Q Consensus 194 ~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~V 273 (538)
++|+|||.+|++|+|||..++.. +.+|...+... +.+-+|||+|++++|+|..|+..+.+ |
T Consensus 164 ~fvIatG~RPrYp~IpG~~Ey~I---TSDDlFsl~~~-------------PGkTLvVGa~YVaLECAgFL~gfg~~---v 224 (503)
T KOG4716|consen 164 NFVIATGLRPRYPDIPGAKEYGI---TSDDLFSLPYE-------------PGKTLVVGAGYVALECAGFLKGFGYD---V 224 (503)
T ss_pred eEEEEecCCCCCCCCCCceeeee---cccccccccCC-------------CCceEEEccceeeeehhhhHhhcCCC---c
Confidence 99999999999999999877654 44555544332 56789999999999999999998887 8
Q ss_pred EEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeeccccc
Q 009310 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353 (538)
Q Consensus 274 tlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 353 (538)
|++-| +-++..++.++.+.+.+.++++||+|.....+..++..++ +.+.+..+++..
T Consensus 225 tVmVR-SI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~----------------------g~l~v~~k~t~t 281 (503)
T KOG4716|consen 225 TVMVR-SILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD----------------------GKLRVFYKNTNT 281 (503)
T ss_pred EEEEE-EeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccC----------------------CcEEEEeecccc
Confidence 88877 5778999999999999999999999998877777766442 344444333333
Q ss_pred CCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCC-CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHH
Q 009310 354 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432 (538)
Q Consensus 354 ~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~-~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~ 432 (538)
+ ++-+-++|+|+||+|..+.++-+. +...|+..++ .|.|.+|+.-++ +.|+|||+||.... .|.+..
T Consensus 282 ~-~~~~~~ydTVl~AiGR~~~~~~l~---L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~~-------kpELTP 349 (503)
T KOG4716|consen 282 G-EEGEEEYDTVLWAIGRKALTDDLN---LDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILED-------KPELTP 349 (503)
T ss_pred c-ccccchhhhhhhhhccccchhhcC---CCccceeecccCCccccChHHhc-CCCceEEecceecC-------Ccccch
Confidence 3 334567999999999999865443 3345777765 589999999888 99999999999974 378888
Q ss_pred HHHHHHHHHHHHHHH
Q 009310 433 VAFQQADFAGWNLWA 447 (538)
Q Consensus 433 ~A~~qg~~aa~~i~~ 447 (538)
.|++.|+.+|+.|.+
T Consensus 350 vAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 350 VAIQSGRLLARRLFA 364 (503)
T ss_pred hhhhhchHHHHHHhc
Confidence 999999999999874
No 73
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-26 Score=204.57 Aligned_cols=294 Identities=16% Similarity=0.131 Sum_probs=212.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc----ccCcc-------hhhhhcCCCCCccccccHHHH
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF----VFKPM-------LYELLSGEVDAWEIAPRFADL 146 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~----~~~p~-------~~~~~~g~~~~~~~~~~~~~~ 146 (538)
.+.+|+|||.|||+..||++++| ..++-+|+|---.- ..+.. ++.+ +..+.-.++...++++
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaar------aelkPllfEG~~~~~i~pGGQLtTTT~veNfPGF-Pdgi~G~~l~d~mrkq 79 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAAR------AELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF-PDGITGPELMDKMRKQ 79 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhh------cccCceEEeeeeccCcCCCceeeeeeccccCCCC-CcccccHHHHHHHHHH
Confidence 34699999999999999999998 56788999853211 11110 1111 1122334556677888
Q ss_pred hccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCcccc-----CcCCCCh
Q 009310 147 LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF-----AFPFSTL 221 (538)
Q Consensus 147 ~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~-----~~~~~~~ 221 (538)
..+++.+++...|.+++...+. +.+.++. +.+.+|.+|+|||+..+...+||..+. ....+..
T Consensus 80 s~r~Gt~i~tEtVskv~~sskp-----------F~l~td~-~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAV 147 (322)
T KOG0404|consen 80 SERFGTEIITETVSKVDLSSKP-----------FKLWTDA-RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAV 147 (322)
T ss_pred HHhhcceeeeeehhhccccCCC-----------eEEEecC-CceeeeeEEEecccceeeeecCCCCcchHHhcccchhhc
Confidence 8888999999999999877653 4566654 489999999999999888888886322 1122222
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHH-HHh
Q 009310 222 EDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKV-LSA 300 (538)
Q Consensus 222 ~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~-l~~ 300 (538)
+|...- ..+.|..+|||||.+++|-|..|..++.+ |.+++|.+.+ +.+..++++ ++.
T Consensus 148 CDGaap-------------ifrnk~laVIGGGDsA~EEA~fLtkyask---Vyii~Rrd~f------RAs~~Mq~ra~~n 205 (322)
T KOG0404|consen 148 CDGAAP-------------IFRNKPLAVIGGGDSAMEEALFLTKYASK---VYIIHRRDHF------RASKIMQQRAEKN 205 (322)
T ss_pred ccCcch-------------hhcCCeeEEEcCcHHHHHHHHHHHhhccE---EEEEEEhhhh------hHHHHHHHHHhcC
Confidence 222110 01257899999999999999999998887 9999998875 445555554 455
Q ss_pred CCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCC
Q 009310 301 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380 (538)
Q Consensus 301 ~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~ 380 (538)
-+|++++|+.+.+...+++.. +++.++.. ..++.+.++.+-+++++|..|++.+++.
T Consensus 206 pnI~v~~nt~~~ea~gd~~~l--------------------~~l~ikn~---~tge~~dl~v~GlFf~IGH~Pat~~l~g 262 (322)
T KOG0404|consen 206 PNIEVLYNTVAVEALGDGKLL--------------------NGLRIKNV---KTGEETDLPVSGLFFAIGHSPATKFLKG 262 (322)
T ss_pred CCeEEEechhhhhhccCcccc--------------------cceEEEec---ccCcccccccceeEEEecCCchhhHhcC
Confidence 699999999999888875433 56666533 2336778999999999999999999975
Q ss_pred CCCccCCCCcCCCCCeeeCC-CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 381 PNNRLHDLPLNARGQAETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 381 ~~~~~~~~~l~~~G~i~vd~-~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
++++|.+|+|++.+ +-.+ +.|++||+||+.... .+++..|...|-++|...-+.|
T Consensus 263 ------qve~d~~GYi~t~pgts~T-svpG~FAAGDVqD~k-------yRQAvTaAgsGciaaldAe~yL 318 (322)
T KOG0404|consen 263 ------QVELDEDGYIVTRPGTSLT-SVPGVFAAGDVQDKK-------YRQAVTAAGSGCIAALDAERYL 318 (322)
T ss_pred ------ceeeccCceEEeccCcccc-cccceeeccccchHH-------HHHHHhhhccchhhhhhHHHHh
Confidence 68899999999984 4445 999999999999852 3566666677777766554444
No 74
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.9e-27 Score=221.31 Aligned_cols=293 Identities=21% Similarity=0.232 Sum_probs=214.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchh----hhhcC-CCCCccccccHHHHhccCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY----ELLSG-EVDAWEIAPRFADLLANTG 151 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~----~~~~g-~~~~~~~~~~~~~~~~~~~ 151 (538)
...++|+||||||||-+||.+.+| +|.+.-|+-. +|..+.+-. .++.- ..+-..+...+.+..+++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaAR------KGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~ 280 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAAR------KGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYD 280 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHh------hcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhcC
Confidence 456899999999999999999999 6677766643 344443311 11111 1122334445677778888
Q ss_pred cEEEEe-eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCcccc---CcCCCChHHHHHH
Q 009310 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLEDACRV 227 (538)
Q Consensus 152 v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~---~~~~~~~~d~~~~ 227 (538)
++.+.. +.+++.+.... -...+|++++|..+..+.+||+||++.+..++||.+++ ...++..+|.--+
T Consensus 281 vDimn~qra~~l~~a~~~--------~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF 352 (520)
T COG3634 281 VDVMNLQRASKLEPAAVE--------GGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF 352 (520)
T ss_pred chhhhhhhhhcceecCCC--------CccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc
Confidence 888874 66666653211 00137899999999999999999999999999997654 2345555554322
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHh-CCCEEE
Q 009310 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLV 306 (538)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~ 306 (538)
.+|+|+|||||++|+|.|-.|+....+ ||+++-.+.+ +....+++.|.. .+|+++
T Consensus 353 ---------------~gK~VAVIGGGNSGvEAAIDLAGiv~h---VtllEF~~eL------kAD~VLq~kl~sl~Nv~ii 408 (520)
T COG3634 353 ---------------KGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEL------KADAVLQDKLRSLPNVTII 408 (520)
T ss_pred ---------------CCceEEEECCCcchHHHHHhHHhhhhe---eeeeecchhh------hhHHHHHHHHhcCCCcEEE
Confidence 268999999999999999999988777 9998876653 344566677766 489999
Q ss_pred cCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccC
Q 009310 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 386 (538)
Q Consensus 307 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~ 386 (538)
+|...++|.++++.. .++..... ..++...++-+-|++-+|..||++|++.
T Consensus 409 ~na~Ttei~Gdg~kV--------------------~Gl~Y~dr---~sge~~~l~LeGvFVqIGL~PNT~WLkg------ 459 (520)
T COG3634 409 TNAQTTEVKGDGDKV--------------------TGLEYRDR---VSGEEHHLELEGVFVQIGLLPNTEWLKG------ 459 (520)
T ss_pred ecceeeEEecCCcee--------------------cceEEEec---cCCceeEEEeeeeEEEEecccChhHhhc------
Confidence 999999999986422 45555432 2234567888999999999999999986
Q ss_pred CCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Q 009310 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 446 (538)
Q Consensus 387 ~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~ 446 (538)
.++++++|.|.||....+ +.|+|||+|||+..+ .+++..|+.+|..++.+..
T Consensus 460 ~vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~-------yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 460 AVELNRRGEIIVDARGET-NVPGVFAAGDCTTVP-------YKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred hhhcCcCccEEEecCCCc-CCCceeecCcccCCc-------cceEEEEecCcchhhhhhh
Confidence 378999999999999999 999999999999874 3555566666666665443
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=3.8e-25 Score=252.37 Aligned_cols=303 Identities=17% Similarity=0.102 Sum_probs=195.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhh-hhcCCCCCccccccHHHHhccC-CcEEE
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYE-LLSGEVDAWEIAPRFADLLANT-GVQFF 155 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~-~~~g~~~~~~~~~~~~~~~~~~-~v~~~ 155 (538)
..+||+|||||||||+||..|++ .|++|+|||+++....+..... ...+ .+..+....+.+.+... +++++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar------~G~~V~liD~~~~~GG~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~v~v~ 234 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR------AGARVILVDEQPEAGGSLLSEAETIDG-KPAADWAAATVAELTAMPEVTLL 234 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCCCeeeccccccCC-ccHHHHHHHHHHHHhcCCCcEEE
Confidence 35799999999999999999998 7889999999887544332211 0111 12222223333444444 48887
Q ss_pred E-eeEEEEcCCCCcC-cCCCceeecc--cEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccc-cCcCCCChHHHHHHHHH
Q 009310 156 K-DRVKLLCPSDHLG-VNGPMACTHG--GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAE-FAFPFSTLEDACRVDRK 230 (538)
Q Consensus 156 ~-~~v~~i~~~~~~~-~~~~~~~~~~--~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~-~~~~~~~~~d~~~~~~~ 230 (538)
. .+|..+....... .+.....+.. .....+....+.||+||||||+.++.|++||.+. .++. ......+
T Consensus 235 ~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~---~~~~~~~--- 308 (985)
T TIGR01372 235 PRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVML---AGAARTY--- 308 (985)
T ss_pred cCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEE---chHHHHH---
Confidence 6 4777764422110 0000000000 0000011126899999999999999999999642 2222 2222221
Q ss_pred HHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCce
Q 009310 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310 (538)
Q Consensus 231 l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~ 310 (538)
+... ...++++|+|||+|++|+|+|..|.+.+.+. |++++..+.+ ...+.+.|++.||++++++.
T Consensus 309 l~~~-----~~~~gk~VvViG~G~~g~e~A~~L~~~G~~v--V~vv~~~~~~--------~~~l~~~L~~~GV~i~~~~~ 373 (985)
T TIGR01372 309 LNRY-----GVAPGKRIVVATNNDSAYRAAADLLAAGIAV--VAIIDARADV--------SPEARAEARELGIEVLTGHV 373 (985)
T ss_pred HHhh-----CcCCCCeEEEECCCHHHHHHHHHHHHcCCce--EEEEccCcch--------hHHHHHHHHHcCCEEEcCCe
Confidence 1110 0112689999999999999999998876432 8888776533 33466788999999999999
Q ss_pred eeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCc
Q 009310 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390 (538)
Q Consensus 311 V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l 390 (538)
+.++.+++.. .+|+++. .++++++++||.|+++.|.+||++++..++. .+..
T Consensus 374 v~~i~g~~~v---------------------~~V~l~~----~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~---~~~~ 425 (985)
T TIGR01372 374 VAATEGGKRV---------------------SGVAVAR----NGGAGQRLEADALAVSGGWTPVVHLFSQRGG---KLAW 425 (985)
T ss_pred EEEEecCCcE---------------------EEEEEEe----cCCceEEEECCEEEEcCCcCchhHHHHhcCC---Ceee
Confidence 9999875421 2455542 1236678999999999999999888765432 1222
Q ss_pred CCC--CCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 391 NAR--GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 391 ~~~--G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
++. +++. .++.|+||++|||+.. ..+..|+.+|+.+|..|+..+..
T Consensus 426 ~~~~~~~~~------~t~v~gVyaaGD~~g~---------~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 426 DAAIAAFLP------GDAVQGCILAGAANGL---------FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred ccccCceec------CCCCCCeEEeeccCCc---------cCHHHHHHHHHHHHHHHHHHcCC
Confidence 221 1211 1368999999999974 57788999999999999988754
No 76
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.94 E-value=4e-26 Score=221.26 Aligned_cols=322 Identities=22% Similarity=0.334 Sum_probs=236.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc--Ccchhhhh----------------cCCC-----
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF--KPMLYELL----------------SGEV----- 134 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~--~p~~~~~~----------------~g~~----- 134 (538)
.....+|||||.+..+++..... ++++.+|.+|..++..+| .|+..++. .|..
T Consensus 177 ~hvp~liigggtaAfaa~rai~s----~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiff 252 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKS----NDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFF 252 (659)
T ss_pred ccCceeEEcCCchhhhccccccc----CCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEe
Confidence 34568999999999998887766 568999999999887766 24332221 1111
Q ss_pred CCccccccHHHHh--ccCCcEEEEe-eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCC-CC
Q 009310 135 DAWEIAPRFADLL--ANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV-PG 210 (538)
Q Consensus 135 ~~~~~~~~~~~~~--~~~~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~i-pG 210 (538)
+++.+.....++- .+-||.+.++ .|..||..++ .|.++||.+|.||.++||||.+|....+ ..
T Consensus 253 epd~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~-------------~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~ 319 (659)
T KOG1346|consen 253 EPDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDK-------------KVILNDGTTIGYDKCLIATGVRPKKLQVFEE 319 (659)
T ss_pred cCCcceeChhHCcccccCceEEEeccceEEeecccC-------------eEEecCCcEeehhheeeecCcCcccchhhhh
Confidence 1122222222221 2347888887 7888887776 5999999999999999999999865432 22
Q ss_pred c----cccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCc-EE-EEecCCccCC
Q 009310 211 A----AEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGI-VQ-AINVETTICP 284 (538)
Q Consensus 211 ~----~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~-Vt-lv~~~~~~l~ 284 (538)
. .+....++...|..++...+.. .++|.|||+|..|-|+|+.|.+.++..+. |+ +++-.-..-.
T Consensus 320 A~~evk~kit~fr~p~DF~rlek~~ae----------k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~k 389 (659)
T KOG1346|consen 320 ASEEVKQKITYFRYPADFKRLEKGLAE----------KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEK 389 (659)
T ss_pred cCHHhhhheeEEecchHHHHHHHhhhh----------cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhh
Confidence 1 2334456677777777665543 46999999999999999999998875442 32 3322222222
Q ss_pred CCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccE
Q 009310 285 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364 (538)
Q Consensus 285 ~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~ 364 (538)
-++..+.++..+.+++.||.++.|..|.++.... +.+.+++. ||.++..|+
T Consensus 390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~-----------------------~nl~lkL~------dG~~l~tD~ 440 (659)
T KOG1346|consen 390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC-----------------------KNLVLKLS------DGSELRTDL 440 (659)
T ss_pred hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc-----------------------cceEEEec------CCCeeeeee
Confidence 3456788888899999999999999999887754 56777775 899999999
Q ss_pred EEEecCCCCCCCCCCCCCCccCCCCcCCC-CCeeeCCCcccCCCCCEEEccccccccCC-CCCCCCccHHHHHHHHHHHH
Q 009310 365 VLWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAG 442 (538)
Q Consensus 365 vI~a~G~~p~~~~l~~~~~~~~~~~l~~~-G~i~vd~~l~~~~~~~VfaiGD~~~~~~~-~~~~~~~~~~~A~~qg~~aa 442 (538)
||+|+|..||+++.... |+++|++ |.+.||..|+. ..|||++||++.+.|+ -|+.....+.+|+-.||.++
T Consensus 441 vVvavG~ePN~ela~~s-----gLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAG 513 (659)
T KOG1346|consen 441 VVVAVGEEPNSELAEAS-----GLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAG 513 (659)
T ss_pred EEEEecCCCchhhcccc-----cceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceecc
Confidence 99999999999988765 5888876 88999999997 5899999999999887 47666788899999999999
Q ss_pred HHHHHHHCCCCCCCceecCc
Q 009310 443 WNLWAAINDRPLLPFRFQNL 462 (538)
Q Consensus 443 ~~i~~~l~~~~~~p~~~~~~ 462 (538)
.|+........-...+|.++
T Consensus 514 ENMtgAakpy~hqsmFWsdl 533 (659)
T KOG1346|consen 514 ENMTGAAKPYKHQSMFWSDL 533 (659)
T ss_pred cccccccCCccccceeeecc
Confidence 99987654433333444443
No 77
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.94 E-value=7.6e-25 Score=229.18 Aligned_cols=303 Identities=24% Similarity=0.290 Sum_probs=231.8
Q ss_pred EEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc--cCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-e
Q 009310 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV--FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-R 158 (538)
Q Consensus 82 VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~--~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~ 158 (538)
+||||+|+||+++|..|++.. .+.+++++..++... ..+....+..+......+..... +....++....+ +
T Consensus 1 ivivG~g~aG~~aa~~l~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL----LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC----CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCE
Confidence 589999999999999988854 667888777765443 34555555555544444444333 223556777764 8
Q ss_pred EEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhc
Q 009310 159 VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN 238 (538)
Q Consensus 159 v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 238 (538)
++.+++..+ .+.+.++ .+.||+||+|||+.|..++ ....+..+.++..++...++.....
T Consensus 76 v~~id~~~~-------------~v~~~~g-~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 135 (415)
T COG0446 76 VTSIDPENK-------------VVLLDDG-EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP----- 135 (415)
T ss_pred EEEecCCCC-------------EEEECCC-cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc-----
Confidence 999998877 4888888 8999999999999998876 2223445667788888877766432
Q ss_pred cCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCC-hhhHHHHHHHHHhCCCEEEcCceeeEEecc
Q 009310 239 FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT-PGNREAALKVLSARKVQLVLGYFVRCIRRV 317 (538)
Q Consensus 239 ~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~-~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~ 317 (538)
.++++|+|+|+.|+|+|..+...+.+ |++++..+++++.+. +...+.+.+.|+++||+++++..+.+|+..
T Consensus 136 -----~~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 136 -----PKDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK 207 (415)
T ss_pred -----cCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc
Confidence 36999999999999999999998866 999999999998877 899999999999999999999999999986
Q ss_pred ccccccccCCCCCcccccccccCCCc-eEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCe
Q 009310 318 GEFEASVKQPESGAIPNIAADKNSDK-YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 396 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i 396 (538)
.+... .. +.. .++..+++|.+++++|.+||..+...... ......|++
T Consensus 208 ~~~~~-------------------~~~~~~--------~~~~~~~~d~~~~~~g~~p~~~l~~~~~~----~~~~~~g~i 256 (415)
T COG0446 208 GNTLV-------------------VERVVG--------IDGEEIKADLVIIGPGERPNVVLANDALP----GLALAGGAV 256 (415)
T ss_pred cCcce-------------------eeEEEE--------eCCcEEEeeEEEEeecccccHHHHhhCcc----ceeccCCCE
Confidence 52110 00 122 27889999999999999999665544210 145667899
Q ss_pred eeCCCcccCCCCCEEEccccccccCCC-C-CCCCccHHHHHHHHHHHHHHHHHH
Q 009310 397 ETDETLCVKGHPRIFALGDSSALRDSS-G-RPLPATAQVAFQQADFAGWNLWAA 448 (538)
Q Consensus 397 ~vd~~l~~~~~~~VfaiGD~~~~~~~~-~-~~~~~~~~~A~~qg~~aa~~i~~~ 448 (538)
.||+.+++...++||++|||+...... + ......++.|..+++.++.++...
T Consensus 257 ~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 257 LVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred EEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 999999983389999999999987654 2 233677889999999999999854
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.91 E-value=1.2e-23 Score=220.63 Aligned_cols=273 Identities=17% Similarity=0.212 Sum_probs=172.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc----cCcch------------------hh-h----
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FKPML------------------YE-L---- 129 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~----~~p~~------------------~~-~---- 129 (538)
...++|+|||||+|||+||++|++ .|++|+|+|+++..+ |.+.. +. +
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~------~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR------EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh------cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccC
Confidence 345899999999999999999998 788999999987533 21100 00 0
Q ss_pred ---------hcCC-------------CCCccccccHHHHhccCCcE--EE-EeeEEEEcCCCCcCcCCCceeecccEEEc
Q 009310 130 ---------LSGE-------------VDAWEIAPRFADLLANTGVQ--FF-KDRVKLLCPSDHLGVNGPMACTHGGTVLL 184 (538)
Q Consensus 130 ---------~~g~-------------~~~~~~~~~~~~~~~~~~v~--~~-~~~v~~i~~~~~~~~~~~~~~~~~~~v~~ 184 (538)
.... ....++...++.+.+.+++. +. ..+|+++++.... ..|++
T Consensus 82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-----------w~V~~ 150 (461)
T PLN02172 82 PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-----------WRVQS 150 (461)
T ss_pred CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-----------EEEEE
Confidence 0000 01123344455666666665 32 3588888764321 13444
Q ss_pred CC--c--eEEEeeEEEEeCC--CCCCCCCCCCccccCc---CCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChh
Q 009310 185 ES--G--LIVEYDWLVLSLG--AEPKLDVVPGAAEFAF---PFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255 (538)
Q Consensus 185 ~~--g--~~~~yD~lVlAtG--~~~~~p~ipG~~~~~~---~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~ 255 (538)
.+ + .+..||+||+||| +.|+.|.+||++++.. +.+.+.+...+ .+++|+|||+|.+
T Consensus 151 ~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~---------------~gk~VvVVG~G~S 215 (461)
T PLN02172 151 KNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPF---------------KNEVVVVIGNFAS 215 (461)
T ss_pred EcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcccc---------------CCCEEEEECCCcC
Confidence 32 1 2467999999999 6799999999865321 11112111111 2689999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCccccc
Q 009310 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335 (538)
Q Consensus 256 g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~ 335 (538)
|+|+|.+|+..+.+ |+++++...+.. ...+.....++..+..|..+..+
T Consensus 216 g~diA~~L~~~a~~---V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~------------------ 264 (461)
T PLN02172 216 GADISRDIAKVAKE---VHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHED------------------ 264 (461)
T ss_pred HHHHHHHHHHhCCe---EEEEEeeccccc----------cccCcCCCCceEECCcccceecC------------------
Confidence 99999999988766 999998653211 01111122344455555554432
Q ss_pred ccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcc--------cCC-
Q 009310 336 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC--------VKG- 406 (538)
Q Consensus 336 ~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~--------~~~- 406 (538)
+.|+++ ||+.+++|.||+|||++++.+++... |.+.+|+..- .+.
T Consensus 265 ------g~V~f~--------DG~~~~~D~Ii~~TGy~~~~pfL~~~------------~~i~v~~~~v~~Ly~~~f~~~~ 318 (461)
T PLN02172 265 ------GSIVFK--------NGKVVYADTIVHCTGYKYHFPFLETN------------GYMRIDENRVEPLYKHVFPPAL 318 (461)
T ss_pred ------CeEEEC--------CCCCccCCEEEECCcCCccccccCcc------------cceeeCCCcchhhHHhhcCCCC
Confidence 446665 77889999999999999999987642 2344443211 123
Q ss_pred CCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 407 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 407 ~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
.|++..+|=... ......+..|++.+|+-+.+
T Consensus 319 ~p~LafiG~~~~---------~~~f~~~E~Qa~~~a~v~sG 350 (461)
T PLN02172 319 APGLSFIGLPAM---------GIQFVMFEIQSKWVAAVLSG 350 (461)
T ss_pred CCcEEEEecccc---------ccCchhHHHHHHHHHHHHcC
Confidence 388999985532 23445677888888876653
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.89 E-value=5.9e-22 Score=216.54 Aligned_cols=294 Identities=14% Similarity=0.107 Sum_probs=169.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC--------------cccCcchhhhh---cCCCCCccc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER--------------FVFKPMLYELL---SGEVDAWEI 139 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~--------------~~~~p~~~~~~---~g~~~~~~~ 139 (538)
...++|+|||||||||+||++|++ .||+||+||+.+. ..|.+++.+.. .|......+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~------~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI 454 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR------SGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI 454 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh------CCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc
Confidence 466899999999999999999998 7999999998532 23445554443 222222222
Q ss_pred ccc--------HHHHhc-cCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC-CCCCCCCC
Q 009310 140 APR--------FADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVP 209 (538)
Q Consensus 140 ~~~--------~~~~~~-~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~-~~~~p~ip 209 (538)
... .+.++. ..+++++.+..... +++.++-....||+|+||||+ .|+.+++|
T Consensus 455 p~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~------------------dit~edl~~~gyDAV~IATGA~kpr~L~IP 516 (1028)
T PRK06567 455 TVRWDKNNLDILRLILERNNNFKYYDGVALDF------------------NITKEQAFDLGFDHIAFCIGAGQPKVLDIE 516 (1028)
T ss_pred cccchHHHHHHHHHHHhcCCceEEECCeEECc------------------cCCHHHHhhcCCCEEEEeCCCCCCCCCCCC
Confidence 221 122221 12355554433222 233333335679999999999 69999999
Q ss_pred CccccCcCCCChHHHHHHHHHHHHHHHhc-cCCCCCCeEEEECCChhHHHHHHHHHHH----------------------
Q 009310 210 GAAEFAFPFSTLEDACRVDRKLSELERRN-FGKDSLIRVAVVGCGYSGVELAATVSER---------------------- 266 (538)
Q Consensus 210 G~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~~~~~~~VvVVGgG~~g~E~A~~l~~~---------------------- 266 (538)
|.+. ..+.+..++.............. .....+++|+|||||++|+|+|.....+
T Consensus 517 Geda--~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~ 594 (1028)
T PRK06567 517 NFEA--KGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDK 594 (1028)
T ss_pred CccC--CCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccH
Confidence 9642 33445555433221111110000 0011257999999999999999844321
Q ss_pred ---------H----------------HhcCcEEEEecCCccCCCCChh--hHHHHHHHHHhCCCEEEcCceeeEEecccc
Q 009310 267 ---------L----------------EEKGIVQAINVETTICPTGTPG--NREAALKVLSARKVQLVLGYFVRCIRRVGE 319 (538)
Q Consensus 267 ---------~----------------~~~~~Vtlv~~~~~~l~~~~~~--~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~ 319 (538)
+ ...+.|+++.|...- .++.. ..+.+ +...+.||+++.+....+|..++.
T Consensus 595 eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~--empA~~~~~eEv-~~A~eEGV~f~~~~~P~~i~~d~~ 671 (1028)
T PRK06567 595 EIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQ--DSPAYKLNHEEL-IYALALGVDFKENMQPLRINVDKY 671 (1028)
T ss_pred HHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChh--hCCCCCCCHHHH-HHHHHcCcEEEecCCcEEEEecCC
Confidence 0 012227777665432 11111 12333 334567999999999999865421
Q ss_pred ccccccCCCCCcccccccccCCCceEEeecc----------------------cccCCcceEEeccEEEEecCCCCCCCC
Q 009310 320 FEASVKQPESGAIPNIAADKNSDKYILELQP----------------------AIKGLESQIFEADLVLWTVGSKPLLPH 377 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~g~~l~~D~vI~a~G~~p~~~~ 377 (538)
+.. .++++.... ....+...+++||+||+|+|..||+.+
T Consensus 672 g~v-------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~ 732 (1028)
T PRK06567 672 GHV-------------------ESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQF 732 (1028)
T ss_pred CeE-------------------EEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccc
Confidence 110 122222100 000113467999999999999999765
Q ss_pred CCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 009310 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (538)
Q Consensus 378 l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~ 453 (538)
... ++=..||+-.. ...+...|+.+|+.++.+|.+.+...+
T Consensus 733 ~~~----------------------------~~s~~~d~~~~-------f~Gtvv~A~as~k~~~~~i~~~l~~~~ 773 (1028)
T PRK06567 733 DED----------------------------KYSYFGDCNPK-------YSGSVVKALASSKEGYDAINKKLINNN 773 (1028)
T ss_pred ccc----------------------------ccccccCCCCc-------cccHHHHHHHHHHhHHHHHHHHHhhCC
Confidence 311 12233444332 123667899999999999988876543
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=3.8e-21 Score=199.19 Aligned_cols=321 Identities=18% Similarity=0.093 Sum_probs=204.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|.|||||||||+||..|.+ .||+||++|+.+......+.- ++....+.++.....+++...+++|+.+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~------~G~~Vtv~e~~~~~GGll~yG--IP~~kl~k~i~d~~i~~l~~~Gv~~~~~ 193 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR------AGHDVTVFERVALDGGLLLYG--IPDFKLPKDILDRRLELLERSGVEFKLN 193 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh------CCCeEEEeCCcCCCceeEEec--CchhhccchHHHHHHHHHHHcCeEEEEc
Confidence 34899999999999999999999 789999999988643332211 2333344566677778888889999876
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHHHHHHH
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER 236 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~ 236 (538)
.....+ ++.+.- .-.||++++|||+. |+..++||.+. .....+..+...+.....
T Consensus 194 ~~vG~~------------------it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~-----~gv~~A~dfL~~~~~~~~ 249 (457)
T COG0493 194 VRVGRD------------------ITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDA-----KGVAFALDFLTRLNKEVL 249 (457)
T ss_pred ceECCc------------------CCHHHH-HHhhCEEEEeccccCCCCCCCCCcCC-----CcchHHHHHHHHHHHHHh
Confidence 533321 333322 34679999999986 78888998631 122233333333322211
Q ss_pred hc-----cCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc--CCCCChhhHHHHHHHHHhCCCEEEcCc
Q 009310 237 RN-----FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI--CPTGTPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 237 ~~-----~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~--l~~~~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
.. .....+++|+|||+|.++++++......+.+. |+.+.+...- ....+........+...+.|+++.+..
T Consensus 250 ~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~ 327 (457)
T COG0493 250 GDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKS--VTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFV 327 (457)
T ss_pred cccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeE--EEEeccccccccCCcccccchhhhhhhhhhcCCcccccC
Confidence 11 11123489999999999999998887776643 6665422211 111222234555677888899999888
Q ss_pred eeeEEecccccc-ccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCC
Q 009310 310 FVRCIRRVGEFE-ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 388 (538)
Q Consensus 310 ~V~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~ 388 (538)
...++..+.++. ..++...+.. ...........-+ .-.++...+++|+|+.++|+.++....... ..++
T Consensus 328 ~~~~~~~~e~GrV~~~~~~~~~~--~~~~~~~~r~~p~-----~v~gs~~~~~aD~v~~aig~~~~~~~~~~~---~~~~ 397 (457)
T COG0493 328 QPKAFIGNEGGRVTGVKFGRVEP--GEYVDGWGRRGPV-----GVIGTEKTDAADTVILAIGFEGDATDGLLL---EFGL 397 (457)
T ss_pred CceeEeecCCCcEeeeecccccc--cCcccccccccCc-----cccCceEEehHHHHHHHhccCCCccccccc---cccc
Confidence 888887643221 0000000000 0000000000000 011245678999999999999884332211 1246
Q ss_pred CcCCCCCeeeCCCc-ccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHH-HHHCC
Q 009310 389 PLNARGQAETDETL-CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW-AAIND 451 (538)
Q Consensus 389 ~l~~~G~i~vd~~l-~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~-~~l~~ 451 (538)
.++..|++.+|+.+ ++ +.|++||.||+... ..+...|+.+|+.+|+.|. ..+.+
T Consensus 398 ~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g--------~~~vv~ai~eGr~aak~i~~~~l~~ 453 (457)
T COG0493 398 KLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG--------AALVVWAIAEGREAAKAIDKELLLG 453 (457)
T ss_pred ccCCCCceecccccccc-cCCCeeeCceeccc--------hhhhhhHHhhchHHHHhhhHHHHhh
Confidence 78899999999988 66 89999999999996 5688899999999999998 44443
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.84 E-value=8.9e-21 Score=201.56 Aligned_cols=318 Identities=18% Similarity=0.201 Sum_probs=147.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc------------chhhh----------hcCC---
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP------------MLYEL----------LSGE--- 133 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p------------~~~~~----------~~g~--- 133 (538)
+|+|+|||||++||++|+.|.+ .|++++++|+++..+..= ....+ ..+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e------~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p 74 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLE------EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFP 74 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHH------TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HC
T ss_pred CCEEEEECccHHHHHHHHHHHH------CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCC
Confidence 3799999999999999999998 688999999998643210 00000 0000
Q ss_pred ------CCCccccccHHHHhccCCcE-EE--EeeEEEEcCCCCcCcCCCceeecccEEEcC-Cc--eEEEeeEEEEeCCC
Q 009310 134 ------VDAWEIAPRFADLLANTGVQ-FF--KDRVKLLCPSDHLGVNGPMACTHGGTVLLE-SG--LIVEYDWLVLSLGA 201 (538)
Q Consensus 134 ------~~~~~~~~~~~~~~~~~~v~-~~--~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~-~g--~~~~yD~lVlAtG~ 201 (538)
....++...++.+.+++++. ++ ..+|+++...... +... ..+|+++ ++ ++..||+||+|||.
T Consensus 75 ~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~--~~~~----~W~V~~~~~g~~~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 75 EDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDF--SATG----KWEVTTENDGKEETEEFDAVVVATGH 148 (531)
T ss_dssp CCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTT--T-ET----EEEEEETTTTEEEEEEECEEEEEE-S
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecccc--CCCc----eEEEEeecCCeEEEEEeCeEEEcCCC
Confidence 01123444456666655542 33 2577777543210 0000 1244443 33 24579999999995
Q ss_pred --CCCCCC--CCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEe
Q 009310 202 --EPKLDV--VPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAIN 277 (538)
Q Consensus 202 --~~~~p~--ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~ 277 (538)
.|++|. +||++.+...+.+..+...-.. ..+|+|+|||+|.+|+|+|.+|+....+ |++..
T Consensus 149 ~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~------------f~gKrVlVVG~g~Sg~DIa~el~~~a~~---v~~s~ 213 (531)
T PF00743_consen 149 FSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEP------------FKGKRVLVVGGGNSGADIAVELSRVAKK---VYLST 213 (531)
T ss_dssp SSCESB-----CTGGGHCSEEEEGGG--TGGG------------GTTSEEEEESSSHHHHHHHHHHTTTSCC---EEEEC
T ss_pred cCCCCCChhhhhhhhcCCeeEEccccCcChhh------------cCCCEEEEEeCCHhHHHHHHHHHHhcCC---eEEEE
Confidence 478885 8998765332222222211110 1278999999999999999999886554 77766
Q ss_pred cCCc-cCCCCC-----------------------hhhHHHHH-HHH------HhCCCEEEcCceeeEEeccccccccccC
Q 009310 278 VETT-ICPTGT-----------------------PGNREAAL-KVL------SARKVQLVLGYFVRCIRRVGEFEASVKQ 326 (538)
Q Consensus 278 ~~~~-~l~~~~-----------------------~~~~~~~~-~~l------~~~gV~v~~~~~V~~i~~~~~~~~~~~~ 326 (538)
|... +++... ..+.+.+. +.+ +..|..-.....-....-+++....+..
T Consensus 214 R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~ 293 (531)
T PF00743_consen 214 RRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRS 293 (531)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6432 222110 01111110 111 1112211111000111123344556677
Q ss_pred CCCCcccccccccCCCceEEeecccccCCcceEE-eccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccC
Q 009310 327 PESGAIPNIAADKNSDKYILELQPAIKGLESQIF-EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 405 (538)
Q Consensus 327 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l-~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~ 405 (538)
+.+.++|++..... ++|+++ ||+.+ ++|.||+|||++...+++.+.. +.. .++.+..-.++-.+
T Consensus 294 G~i~vk~~I~~~~~-~~v~F~--------DGs~~e~vD~II~~TGY~~~fpFL~~~~-----~~~-~~~~~~LYk~vfp~ 358 (531)
T PF00743_consen 294 GRIKVKPDIKRFTE-NSVIFE--------DGSTEEDVDVIIFCTGYKFSFPFLDESL-----IKV-DDNRVRLYKHVFPP 358 (531)
T ss_dssp -----EE-EEEE-S-SEEEET--------TSEEEEE-SEEEE---EE---TTB-TTT-----T-S--SSSSSEETTTEET
T ss_pred cccccccccccccc-cccccc--------cccccccccccccccccccccccccccc-----ccc-cccccccccccccc
Confidence 77888888877654 677775 77775 6999999999999999997642 111 12222222222111
Q ss_pred --CCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Q 009310 406 --GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 446 (538)
Q Consensus 406 --~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~ 446 (538)
.+|++..+|=+... ......+..|++.+|+-+.
T Consensus 359 ~~~~ptLafIG~~~~~--------g~~fp~~ElQArw~a~v~s 393 (531)
T PF00743_consen 359 NLDHPTLAFIGLVQPF--------GSIFPIFELQARWAARVFS 393 (531)
T ss_dssp ETTSTTEEESS-SBSS--------S-HHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccc--------ccccccccccccccccccc
Confidence 35789999876532 2344567788888877654
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.83 E-value=2.9e-20 Score=197.88 Aligned_cols=320 Identities=19% Similarity=0.165 Sum_probs=183.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEE
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (538)
....++|.|||.|||||+||-.|-+ .||.|+++|+.++.+...+ +....-+++ ..+..+.-+++.+.+++|+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk------~gh~v~vyer~dr~ggll~-ygipnmkld-k~vv~rrv~ll~~egi~f~ 1853 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNK------AGHTVTVYERSDRVGGLLM-YGIPNMKLD-KFVVQRRVDLLEQEGIRFV 1853 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhh------cCcEEEEEEecCCcCceee-ecCCccchh-HHHHHHHHHHHHhhCceEE
Confidence 3456899999999999999999998 8999999999998543222 111111111 2234445577888899998
Q ss_pred EeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHH-HH
Q 009310 156 KDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKL-SE 233 (538)
Q Consensus 156 ~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l-~~ 233 (538)
.+.- |. +.+.++ +..-.+|.+|+|+|+. |+..++||-+- +...-+.++.+.- +.
T Consensus 1854 tn~e--ig----------------k~vs~d-~l~~~~daiv~a~gst~prdlpv~grd~-----kgv~fame~l~~ntk~ 1909 (2142)
T KOG0399|consen 1854 TNTE--IG----------------KHVSLD-ELKKENDAIVLATGSTTPRDLPVPGRDL-----KGVHFAMEFLEKNTKS 1909 (2142)
T ss_pred eecc--cc----------------ccccHH-HHhhccCeEEEEeCCCCCcCCCCCCccc-----cccHHHHHHHHHhHHh
Confidence 7531 11 123332 2355799999999986 88888999632 2222233322211 11
Q ss_pred HHHhc----cCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC---------CCCChhh-----HHHHH
Q 009310 234 LERRN----FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC---------PTGTPGN-----REAAL 295 (538)
Q Consensus 234 ~~~~~----~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l---------~~~~~~~-----~~~~~ 295 (538)
+-... .....+|+|+|||||.+|-++...-.+++... |.-++--+... |.++.-+ ...+.
T Consensus 1910 lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~s--v~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~ 1987 (2142)
T KOG0399|consen 1910 LLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKS--VGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAK 1987 (2142)
T ss_pred hhccccccceeccCCCeEEEECCCCccccccccchhhccce--ecceeecCCCCcccCCCCCCccCceEEEeecchHHHH
Confidence 10000 11234799999999999999998877776543 32222212111 1111000 11111
Q ss_pred HHHHhCCCEEEcCce-eeEEecccccc-ccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCC
Q 009310 296 KVLSARKVQLVLGYF-VRCIRRVGEFE-ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373 (538)
Q Consensus 296 ~~l~~~gV~v~~~~~-V~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p 373 (538)
+ ..|-...+-+. -+++..+++.. ..+.+..+.++.+. .+...+. +...+.+.++||+||++.|+..
T Consensus 1988 ~---~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~-----~g~w~~~----ei~~see~~eadlv~lamgf~g 2055 (2142)
T KOG0399|consen 1988 E---HYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDD-----KGRWQMK----EINNSEEIIEADLVILAMGFVG 2055 (2142)
T ss_pred H---HhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecC-----CCceEEE----EcCCcceeeecceeeeeccccC
Confidence 1 11211111111 11121111100 00000000000000 0111111 1223567899999999999985
Q ss_pred CCCCCCCCCCccCCCCcCCCCCeeeC-CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 374 LLPHVEPPNNRLHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 374 ~~~~l~~~~~~~~~~~l~~~G~i~vd-~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
..+...+ .++++.|+++.|.+- +.+.+ +.++|||+|||... ..+..+|+++|+.+|+.+-..+.++
T Consensus 2056 pe~~~~~----~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrg--------qslvvwai~egrq~a~~vd~~~~~~ 2122 (2142)
T KOG0399|consen 2056 PEKSVIE----QLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRG--------QSLVVWAIQEGRQAARQVDELMGGT 2122 (2142)
T ss_pred cchhhhh----hcCcccCccccccCCCccccc-cccceeecccccCC--------ceEEEEEehhhhHHHHHHHHHhCCc
Confidence 5333322 346888898888875 66777 89999999999986 4577889999999999999877666
Q ss_pred CC
Q 009310 453 PL 454 (538)
Q Consensus 453 ~~ 454 (538)
..
T Consensus 2123 t~ 2124 (2142)
T KOG0399|consen 2123 TD 2124 (2142)
T ss_pred cc
Confidence 53
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.79 E-value=7.2e-20 Score=172.10 Aligned_cols=151 Identities=30% Similarity=0.444 Sum_probs=95.9
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc--chhhhhcCCCCCccccc-----cHHHHhccCCcE
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP--MLYELLSGEVDAWEIAP-----RFADLLANTGVQ 153 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p--~~~~~~~g~~~~~~~~~-----~~~~~~~~~~v~ 153 (538)
|||||||||||++||.+|++ .+++|+|||+.+...+.. +................ .+.+.+...+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~------~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 74 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR------PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVE 74 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHE
T ss_pred CEEEEecHHHHHHHHHHHhc------CCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEE
Confidence 79999999999999999997 788999999987544421 11111111100000000 333333556888
Q ss_pred E-EEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHH
Q 009310 154 F-FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232 (538)
Q Consensus 154 ~-~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~ 232 (538)
+ +..++.+++...+. +.... .........++.++.||+||+|||+.|+.|.+||. +.........++..+...+.
T Consensus 75 ~~~~~~v~~i~~~~~~-~~~~~--~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~ 150 (201)
T PF07992_consen 75 IRLNAKVVSIDPESKR-VVCPA--VTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELLE 150 (201)
T ss_dssp EEHHHTEEEEEESTTE-EEETC--EEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHSS
T ss_pred Eeeccccccccccccc-cccCc--ccceeeccCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccccc
Confidence 8 44788999776651 00000 00011244567799999999999999999999997 33344566777777666532
Q ss_pred HHHHhccCCCCCCeEEEEC
Q 009310 233 ELERRNFGKDSLIRVAVVG 251 (538)
Q Consensus 233 ~~~~~~~~~~~~~~VvVVG 251 (538)
. +++|+|||
T Consensus 151 ~----------~~~v~VvG 159 (201)
T PF07992_consen 151 S----------PKRVAVVG 159 (201)
T ss_dssp T----------TSEEEEES
T ss_pred c----------cccccccc
Confidence 1 45999999
No 84
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.77 E-value=2.4e-18 Score=158.44 Aligned_cols=283 Identities=21% Similarity=0.256 Sum_probs=167.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc----cCcc---hhhhhcCCCCCccccccHHHHhccCCcE
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FKPM---LYELLSGEVDAWEIAPRFADLLANTGVQ 153 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~----~~p~---~~~~~~g~~~~~~~~~~~~~~~~~~~v~ 153 (538)
+.+|||||.||.+||..|+.+. +..+|+|+..++..- |++. +..+-...-.-.++..+++.++.
T Consensus 1 kfivvgggiagvscaeqla~~~----psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~----- 71 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE----PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN----- 71 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC----CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHH-----
Confidence 4689999999999999999864 677999999887421 1111 00000000111112222332221
Q ss_pred EEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHH
Q 009310 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE 233 (538)
Q Consensus 154 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~ 233 (538)
.|..++...+ .+.+++|..+.|++|++|||++|... ..|....+..+++.+.+..++..+..
T Consensus 72 ----~v~~~~s~eh-------------ci~t~~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~k 133 (334)
T KOG2755|consen 72 ----DVVTWDSSEH-------------CIHTQNGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLVK 133 (334)
T ss_pred ----hhhhhccccc-------------eEEecCCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHhh
Confidence 2334433333 68889999999999999999998654 34445556667788888888888765
Q ss_pred HHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-CChhhHHHHHHHHHhC-----------
Q 009310 234 LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-GTPGNREAALKVLSAR----------- 301 (538)
Q Consensus 234 ~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~----------- 301 (538)
.|.|+|+|.|-+++|++.++... + |++....+.+... ++|...+.+...|...
T Consensus 134 ----------aK~VlilgnGgia~El~yElk~~--n---v~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~ 198 (334)
T KOG2755|consen 134 ----------AKIVLILGNGGIAMELTYELKIL--N---VTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHF 198 (334)
T ss_pred ----------cceEEEEecCchhHHHHHHhhcc--e---eEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhh
Confidence 68999999999999999998542 1 7777766666543 3555544443333110
Q ss_pred -CCEEEcCce-----------------eeEEeccccc--cccccCCCCCcccccccccCCCceEEeecccccCCcceEEe
Q 009310 302 -KVQLVLGYF-----------------VRCIRRVGEF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (538)
Q Consensus 302 -gV~v~~~~~-----------------V~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~ 361 (538)
.++...+.. ...+...... ..-+..... ...+. +...+.-.+++.+.+ ..+.
T Consensus 199 q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~------~~d~~-d~~sv~~~~~ek~~~-~qlt 270 (334)
T KOG2755|consen 199 QYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVIT------STDTS-DNLSVHYMDKEKMAD-NQLT 270 (334)
T ss_pred hhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheee------eccch-hhccccccccccccc-ceee
Confidence 111111100 0000000000 000000000 00000 000011111122323 3577
Q ss_pred ccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccc
Q 009310 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419 (538)
Q Consensus 362 ~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~ 419 (538)
||.+++++|..||.++.-.. .+.+.++|.+.||+.+++ +.|++||+||.+..
T Consensus 271 ~d~ivSatgvtpn~e~~~~~-----~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 271 CDFIVSATGVTPNSEWAMNK-----MLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred eeEEEeccccCcCceEEecC-----hhhhccccCeeehhhccc-cccceeeecceecc
Confidence 99999999999998865432 356778899999999999 99999999999985
No 85
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.3e-16 Score=165.05 Aligned_cols=177 Identities=21% Similarity=0.230 Sum_probs=112.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCE-EEEEcCCCCcccC-------------cchhhhhc-------CCC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFK-------------PMLYELLS-------GEV 134 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~~~~~~~-------------p~~~~~~~-------g~~ 134 (538)
.....+|+|||||++||++|++|.+ .|.. ++|+|+++..+.. |....-+. +..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~------~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~ 78 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ------AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAF 78 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH------cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccC
Confidence 3456899999999999999999999 4555 9999999732211 11000011 111
Q ss_pred CC-ccccccHHHHhccCCcEEEE---eeEEEEcCCCCcCcCCCceeecccEEEcCCceE--EEeeEEEEeCCC--CCCCC
Q 009310 135 DA-WEIAPRFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI--VEYDWLVLSLGA--EPKLD 206 (538)
Q Consensus 135 ~~-~~~~~~~~~~~~~~~v~~~~---~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~--~~yD~lVlAtG~--~~~~p 206 (538)
.. ..+...+.++++.+++.+.. ..|+.++.+.+. ...+|+++++.. +.+|+||+|||. .|+.|
T Consensus 79 ~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~---------~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP 149 (443)
T COG2072 79 APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDT---------KRWTVTTSDGGTGELTADFVVVATGHLSEPYIP 149 (443)
T ss_pred CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCC---------CeEEEEEcCCCeeeEecCEEEEeecCCCCCCCC
Confidence 11 11333445556666544432 233334333321 013677777655 559999999995 59999
Q ss_pred CCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 207 VVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 207 ~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
.++|.+++.....+..+.....+ -.+|+|+|||+|.+|++++.+|.+.+++ |+++.|.+..
T Consensus 150 ~~~G~~~f~g~~~HS~~~~~~~~------------~~GKrV~VIG~GaSA~di~~~l~~~ga~---vt~~qRs~~~ 210 (443)
T COG2072 150 DFAGLDEFKGRILHSADWPNPED------------LRGKRVLVIGAGASAVDIAPELAEVGAS---VTLSQRSPPH 210 (443)
T ss_pred CCCCccCCCceEEchhcCCCccc------------cCCCeEEEECCCccHHHHHHHHHhcCCe---eEEEecCCCc
Confidence 99998775433222222111111 1278999999999999999999998855 9999887643
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.71 E-value=1e-16 Score=161.82 Aligned_cols=247 Identities=21% Similarity=0.178 Sum_probs=129.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchh--h------hhcCCCCCccc------------
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY--E------LLSGEVDAWEI------------ 139 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~--~------~~~g~~~~~~~------------ 139 (538)
+|+++||.||++|+.|..|.+. ...++..+|+.+.+.|+|.+. . ++.+...+.+.
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~-----~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~ 77 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEH-----GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHE 77 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHH
T ss_pred eeEEEEeeCHHHHHHHHHhhhc-----CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHH
Confidence 6999999999999999999885 357999999999988887431 1 11111111100
Q ss_pred ----------------cccHHHH----hccCCc-EEEEeeEEEEcCCCCcCcCCCceeecccEEEc----CCceEEEeeE
Q 009310 140 ----------------APRFADL----LANTGV-QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL----ESGLIVEYDW 194 (538)
Q Consensus 140 ----------------~~~~~~~----~~~~~v-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~----~~g~~~~yD~ 194 (538)
...+.++ .++..- -.+..+|++|++....+. ..+.|.+ .++..+.++.
T Consensus 78 ~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~-------~~~~V~~~~~~g~~~~~~ar~ 150 (341)
T PF13434_consen 78 HGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDE-------DLFRVTTRDSDGDGETYRARN 150 (341)
T ss_dssp TT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTE-------EEEEEEEEETTS-EEEEEESE
T ss_pred cCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCc-------cEEEEEEeecCCCeeEEEeCe
Confidence 0001111 122222 223458888876543100 1125555 2456899999
Q ss_pred EEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEE
Q 009310 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQ 274 (538)
Q Consensus 195 lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vt 274 (538)
||||||..|.+|..-........+....+.....+.. ...++|+|||||.+|.|++..|.+.+.. ..|+
T Consensus 151 vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~----------~~~~~V~VVGgGQSAAEi~~~L~~~~~~-~~V~ 219 (341)
T PF13434_consen 151 VVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQS----------LAGKRVAVVGGGQSAAEIFLDLLRRGPE-AKVT 219 (341)
T ss_dssp EEE----EE---GGGGGGTT-TTEEEGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHHH-TT-EEEE
T ss_pred EEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccc----------cCCCeEEEECCcHhHHHHHHHHHhCCCC-cEEE
Confidence 9999998888775332111101122222222221111 1157999999999999999999998663 2399
Q ss_pred EEecCCccCCCC---------Chhh-----------HH--------------------HHHH------HHHhCCCEEEcC
Q 009310 275 AINVETTICPTG---------TPGN-----------RE--------------------AALK------VLSARKVQLVLG 308 (538)
Q Consensus 275 lv~~~~~~l~~~---------~~~~-----------~~--------------------~~~~------~l~~~gV~v~~~ 308 (538)
++.|...+.+.. .|+. +. .+.+ ...+..++++.+
T Consensus 220 ~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~ 299 (341)
T PF13434_consen 220 WISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPN 299 (341)
T ss_dssp EEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETT
T ss_pred EEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCC
Confidence 999987665432 1211 11 1111 122345789999
Q ss_pred ceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCC
Q 009310 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372 (538)
Q Consensus 309 ~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~ 372 (538)
+.|+.++..++ +++.+.+.+...+ ....+++|.||+|||++
T Consensus 300 ~~v~~~~~~~~----------------------~~~~l~~~~~~~~-~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 300 TEVTSAEQDGD----------------------GGVRLTLRHRQTG-EEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEEEEES-----------------------SSEEEEEEETTT---EEEEEESEEEE---EE
T ss_pred CEEEEEEECCC----------------------CEEEEEEEECCCC-CeEEEecCEEEEcCCcc
Confidence 99999988652 4677777654444 56788999999999985
No 87
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=9.1e-16 Score=158.40 Aligned_cols=228 Identities=19% Similarity=0.254 Sum_probs=133.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc----cC--------cchhhhh----------cCC-
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FK--------PMLYELL----------SGE- 133 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~----~~--------p~~~~~~----------~g~- 133 (538)
.+.++|+|||||+|||.+|+.|.+ .|++++++||.+... |. ++...+. .+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~------~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfp 77 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLR------EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFP 77 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHH------CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCC
Confidence 346899999999999999999999 789999999998643 22 1010000 000
Q ss_pred ---------CCCccccccHHHHhccCCc--EEE-EeeEEEEcCCC--CcCcCCCceeecccEEEcCCc----eEEEeeEE
Q 009310 134 ---------VDAWEIAPRFADLLANTGV--QFF-KDRVKLLCPSD--HLGVNGPMACTHGGTVLLESG----LIVEYDWL 195 (538)
Q Consensus 134 ---------~~~~~~~~~~~~~~~~~~v--~~~-~~~v~~i~~~~--~~~~~~~~~~~~~~~v~~~~g----~~~~yD~l 195 (538)
.+..++...+..+.+++++ .+. ..+|..++... ++ .|...+. ...-||.|
T Consensus 78 f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW------------~V~~~~~~~~~~~~ifd~V 145 (448)
T KOG1399|consen 78 FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW------------RVTTKDNGTQIEEEIFDAV 145 (448)
T ss_pred CcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce------------eEEEecCCcceeEEEeeEE
Confidence 0112344445566665553 122 23556665543 33 3444322 47789999
Q ss_pred EEeCCCC--CCCCCCCCc--cccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcC
Q 009310 196 VLSLGAE--PKLDVVPGA--AEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271 (538)
Q Consensus 196 VlAtG~~--~~~p~ipG~--~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~ 271 (538)
++|||-. |+.|.+||. +.+...+-+..+... .+...+|+|+|||+|++|+|++.+++....+
T Consensus 146 vVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~------------~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~-- 211 (448)
T KOG1399|consen 146 VVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKS------------PEKFRDKVVLVVGCGNSGMDISLDLLRVAKE-- 211 (448)
T ss_pred EEcccCcCCCCCCcCCCCchhhcCCcceehhhccC------------cccccCceEEEECCCccHHHHHHHHHHhccC--
Confidence 9999976 888888883 333221111111110 0112268999999999999999999887766
Q ss_pred cEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeeccc
Q 009310 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 351 (538)
Q Consensus 272 ~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 351 (538)
|.+..+ .......++. . ...++-.+.. |+.+++ .+..+.
T Consensus 212 -v~~~~~-~~~~~~~~~~-------~-~~~~~~~~~~--i~~~~e-------------------------~~~~~~---- 250 (448)
T KOG1399|consen 212 -VHLSVV-SPKVHVEPPE-------I-LGENLWQVPS--IKSFTE-------------------------DGSVFE---- 250 (448)
T ss_pred -cceeee-cccccccccc-------e-eecceEEccc--cccccC-------------------------cceEEE----
Confidence 555433 1000000000 0 0012222221 444444 344443
Q ss_pred ccCCcceEEeccEEEEecCCCCCCCCCCC
Q 009310 352 IKGLESQIFEADLVLWTVGSKPLLPHVEP 380 (538)
Q Consensus 352 ~~~~~g~~l~~D~vI~a~G~~p~~~~l~~ 380 (538)
.++....+|.||+|||+.-..+++..
T Consensus 251 ---~~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 251 ---KGGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred ---cCceeEEeeeEEEeeeeEeecceecc
Confidence 26677889999999999988888764
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.68 E-value=8.1e-16 Score=149.05 Aligned_cols=311 Identities=18% Similarity=0.187 Sum_probs=177.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|.|||+||||+.+|..|.+ ++.+.+|+|+|+.+. +|...-+.+++...+...+...|...+++....|+-+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk----~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gN 93 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLK----RHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGN 93 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHh----cCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccceEEEec
Confidence 34599999999999999999988 347899999999875 3433445556666666666677888877766776654
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCC-CCCCCCCCccccCcCCCChHHHHHHHHHHHHHHH
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER 236 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~-~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~ 236 (538)
.- + +..+.+.+- +-.||.+|||.|+. ++..+|||.+- ..+.+...+..-..-+...+.
T Consensus 94 v~--v----------------G~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l--~~V~Sarefv~Wyng~P~~~~ 152 (468)
T KOG1800|consen 94 VK--V----------------GRDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEEL--SGVISAREFVGWYNGLPENQN 152 (468)
T ss_pred ce--e----------------cccccHHHH-hhcccEEEEEecCCCCcccCCCCccc--ccceehhhhhhhccCCCcccc
Confidence 21 1 012333322 55799999999997 78899999641 122222222211111111111
Q ss_pred hccCCCCCCeEEEECCChhHHHHHHHHHHHHH-------------------hcCcEEEEecCCccCCCCC----------
Q 009310 237 RNFGKDSLIRVAVVGCGYSGVELAATVSERLE-------------------EKGIVQAINVETTICPTGT---------- 287 (538)
Q Consensus 237 ~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~-------------------~~~~Vtlv~~~~~~l~~~~---------- 287 (538)
..... ...+|+|||.|++++++|..|...-. +...|+++.|...+...+.
T Consensus 153 le~dl-s~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l 231 (468)
T KOG1800|consen 153 LEPDL-SGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLEL 231 (468)
T ss_pred cCccc-ccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCC
Confidence 00011 25799999999999999987753211 1123788877543221111
Q ss_pred ----------------------------hhhHHHHHHHHHhCC---------CE---EEcCceeeEEeccccccccccCC
Q 009310 288 ----------------------------PGNREAALKVLSARK---------VQ---LVLGYFVRCIRRVGEFEASVKQP 327 (538)
Q Consensus 288 ----------------------------~~~~~~~~~~l~~~g---------V~---v~~~~~V~~i~~~~~~~~~~~~~ 327 (538)
.++.+.+.+.+.++- .+ +.+.....+|.++.+..
T Consensus 232 ~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v------ 305 (468)
T KOG1800|consen 232 PGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGV------ 305 (468)
T ss_pred CCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccc------
Confidence 112222222222211 00 01111111222211000
Q ss_pred CCCcccccccccCCCceEEeecc-----cccCCcceEEeccEEEEecCCCCCCCCCCCCCCccCCCCcCCCCCeeeCCCc
Q 009310 328 ESGAIPNIAADKNSDKYILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 402 (538)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l 402 (538)
.++.+.... ....++-++++|+++|.++|++.. +.-. +++.|....+.-|...
T Consensus 306 --------------~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~-pv~~-------gipFd~~kgvv~n~~G 363 (468)
T KOG1800|consen 306 --------------SGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSV-PVDS-------GIPFDDKKGVVPNVNG 363 (468)
T ss_pred --------------cceEEEeeeehhhcccccCceEeeccceeEeeeeeccc-ccCC-------CCCcccccCcccCCCc
Confidence 122221100 123346678999999999999855 2221 3455554444444433
Q ss_pred ccC---CCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 403 CVK---GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 403 ~~~---~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
++. -.|++|+.|=|...+ ...+...++++..+|..|.+.+.
T Consensus 364 rV~~s~~~pglY~sGW~k~GP-------~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 364 RVLVSGCSPGLYASGWVKHGP-------TGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred eEEeeccCCceEEEeeeccCC-------cceeeehhhhHHHHHHHHHHHHH
Confidence 331 259999999998852 24556678889999999988876
No 89
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.67 E-value=2.1e-15 Score=155.54 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=67.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEE
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (538)
....++|+|||||||||+||.+|.+. .|++|+|||+.+..+.... +.+.+.......+...+...+...+++|.
T Consensus 36 ~~~~krVAIVGaGPAGlyaA~~Ll~~-----~g~~VtlfEk~p~pgGLvR-~GVaPdh~~~k~v~~~f~~~~~~~~v~f~ 109 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKH-----ERVKVDIFEKLPNPYGLIR-YGVAPDHIHVKNTYKTFDPVFLSPNYRFF 109 (506)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh-----cCCeEEEEecCCCCccEEE-EeCCCCCccHHHHHHHHHHHHhhCCeEEE
Confidence 34568999999999999999987642 6899999999987543222 23333333334444555555555677776
Q ss_pred EeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCC
Q 009310 156 KDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (538)
Q Consensus 156 ~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~ 205 (538)
.+. .+ .. .++.++- ...||+||+|+|+.+..
T Consensus 110 gnv--~V--G~--------------Dvt~eeL-~~~YDAVIlAtGA~~l~ 140 (506)
T PTZ00188 110 GNV--HV--GV--------------DLKMEEL-RNHYNCVIFCCGASEVS 140 (506)
T ss_pred eee--Ee--cC--------------ccCHHHH-HhcCCEEEEEcCCCCCC
Confidence 321 11 10 2333333 33899999999998643
No 90
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.66 E-value=3.1e-14 Score=140.22 Aligned_cols=313 Identities=19% Similarity=0.221 Sum_probs=188.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcch--hh------hhcCCCCCccccc-------
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML--YE------LLSGEVDAWEIAP------- 141 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~--~~------~~~g~~~~~~~~~------- 141 (538)
+...|++.||-||+-|+.|..|... .+.+...+|+.+.|.|+|.. +. .+.+..++.+...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNY 77 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNY 77 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHH
Confidence 4558999999999999999999874 45889999999999988742 11 1111111111111
Q ss_pred ---------------------cHHHHhc---cCCcEEE--EeeEEEE---cCCCCcCcCCCceeecccEEEcCCceEEEe
Q 009310 142 ---------------------RFADLLA---NTGVQFF--KDRVKLL---CPSDHLGVNGPMACTHGGTVLLESGLIVEY 192 (538)
Q Consensus 142 ---------------------~~~~~~~---~~~v~~~--~~~v~~i---~~~~~~~~~~~~~~~~~~~v~~~~g~~~~y 192 (538)
.+.+++. .. .... ..+|+.| +.+... ...+.+.++..+.+
T Consensus 78 L~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~-l~~~rfg~~V~~i~~~~~d~~~----------~~~~~t~~~~~y~a 146 (436)
T COG3486 78 LHEHGRLYEFLNYETFHIPRREYNDYCQWAASQ-LPSLRFGEEVTDISSLDGDAVV----------RLFVVTANGTVYRA 146 (436)
T ss_pred HHHcchHhhhhhhhcccccHHHHHHHHHHHHhh-CCccccCCeeccccccCCccee----------EEEEEcCCCcEEEe
Confidence 1111111 11 1111 1355533 332221 01255566668999
Q ss_pred eEEEEeCCCCCCCCCC-CCcc-ccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhc
Q 009310 193 DWLVLSLGAEPKLDVV-PGAA-EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEK 270 (538)
Q Consensus 193 D~lVlAtG~~~~~p~i-pG~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~ 270 (538)
..|||++|.+|.+|+. ..+. +.++ ...+...-+..+ .. .++|.|||||.+|.|+-..|.......
T Consensus 147 r~lVlg~G~~P~IP~~f~~l~~~~vf---Hss~~~~~~~~~---~~-------~~~V~ViG~GQSAAEi~~~Ll~~~~~~ 213 (436)
T COG3486 147 RNLVLGVGTQPYIPPCFRSLIGERVF---HSSEYLERHPEL---LQ-------KRSVTVIGSGQSAAEIFLDLLNSQPPQ 213 (436)
T ss_pred eeEEEccCCCcCCChHHhCcCcccee---ehHHHHHhhHHh---hc-------CceEEEEcCCccHHHHHHHHHhCCCCc
Confidence 9999999999998852 2221 2222 122222222221 11 235999999999999999987655443
Q ss_pred C-cEEEEecCCccCCCC---------ChhhHH-----------HH-------------------HHHH-------HhCCC
Q 009310 271 G-IVQAINVETTICPTG---------TPGNRE-----------AA-------------------LKVL-------SARKV 303 (538)
Q Consensus 271 ~-~Vtlv~~~~~~l~~~---------~~~~~~-----------~~-------------------~~~l-------~~~gV 303 (538)
. .+.++.|...++|.- .|+..+ .+ .+.| .+..|
T Consensus 214 ~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v 293 (436)
T COG3486 214 DYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDV 293 (436)
T ss_pred CccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCe
Confidence 3 288899988776641 122211 11 1111 13467
Q ss_pred EEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCC-CCCCCC
Q 009310 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP-HVEPPN 382 (538)
Q Consensus 304 ~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~-~l~~~~ 382 (538)
.++.++.|..++.+++ +.+.+.+.....+ +.++++.|.||+|||++...+ |+..+.
T Consensus 294 ~l~~~~ev~~~~~~G~----------------------g~~~l~~~~~~~~-~~~t~~~D~vIlATGY~~~~P~fL~~l~ 350 (436)
T COG3486 294 RLLSLSEVQSVEPAGD----------------------GRYRLTLRHHETG-ELETVETDAVILATGYRRAVPSFLEGLA 350 (436)
T ss_pred eeccccceeeeecCCC----------------------ceEEEEEeeccCC-CceEEEeeEEEEecccccCCchhhhhHH
Confidence 8899999999998763 2266665443333 667899999999999996655 554432
Q ss_pred CccCCCCcCCCCCeeeCCCcccCCC----CCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 009310 383 NRLHDLPLNARGQAETDETLCVKGH----PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (538)
Q Consensus 383 ~~~~~~~l~~~G~i~vd~~l~~~~~----~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~ 452 (538)
..+..+++|...|+..+++... -.||+.|-+.... |-..|.....|.+. ..|...+.|.
T Consensus 351 ---d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htH---Gig~pdLsl~a~Ra-----a~I~~~L~g~ 413 (436)
T COG3486 351 ---DRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTH---GIGAPDLSLGAWRA-----AVILNSLLGR 413 (436)
T ss_pred ---HhhcccccCCeEecCceeeecCCCCcceEEEeccccccc---ccCCccchHHHHHH-----HHHHHHHhCc
Confidence 2355788999999988887432 2699998777642 22234555555553 3344555554
No 91
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.65 E-value=6.5e-17 Score=152.31 Aligned_cols=164 Identities=23% Similarity=0.283 Sum_probs=95.3
Q ss_pred EEECCcHHHHHHHHHhhhcccCCCCCCE-EEEEcCCCCccc------------Ccchhh--h------------------
Q 009310 83 CILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVF------------KPMLYE--L------------------ 129 (538)
Q Consensus 83 VIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~~~~~~------------~p~~~~--~------------------ 129 (538)
+||||||+||++|.+|.+ .|.+ |+|||+++.... .|.... .
T Consensus 1 ~IIGaG~aGl~~a~~l~~------~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE------RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRW 74 (203)
T ss_dssp EEE--SHHHHHHHHHHHH------TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHh------CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCC
Confidence 799999999999999999 5678 999999864211 011000 0
Q ss_pred hcCCCCCccccccHHHHhccCCcEEEE-eeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC--CCCCC
Q 009310 130 LSGEVDAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA--EPKLD 206 (538)
Q Consensus 130 ~~g~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~--~~~~p 206 (538)
.......+++...+..+.+++++++.. .+|+++..+.. .+.|++.+++.+.+|+||+|||. .|+.|
T Consensus 75 ~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-----------~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 75 PHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD-----------GWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp SBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETT-----------TEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred CcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEecc-----------EEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 001112233344456666677777554 47888865543 13788888888999999999996 68889
Q ss_pred CCCC-ccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 207 VVPG-AAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 207 ~ipG-~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.+|| .....+. ..+.....+ -.+++|+|||+|.+|+|+|..|++.+.+ |+++.|.+.
T Consensus 144 ~~~g~~~~~~~h---~~~~~~~~~------------~~~k~V~VVG~G~SA~d~a~~l~~~g~~---V~~~~R~~~ 201 (203)
T PF13738_consen 144 DIPGSAFRPIIH---SADWRDPED------------FKGKRVVVVGGGNSAVDIAYALAKAGKS---VTLVTRSPI 201 (203)
T ss_dssp S-TTGGCSEEEE---GGG-STTGG------------CTTSEEEEE--SHHHHHHHHHHTTTCSE---EEEEESS--
T ss_pred ccccccccceEe---hhhcCChhh------------cCCCcEEEEcChHHHHHHHHHHHhhCCE---EEEEecCCC
Confidence 8998 2222111 111111000 1168999999999999999999988744 999999763
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.65 E-value=1.9e-14 Score=143.52 Aligned_cols=328 Identities=18% Similarity=0.242 Sum_probs=184.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc-hhhhhcCC-CCCccccccHHHHhccCCcEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM-LYELLSGE-VDAWEIAPRFADLLANTGVQF 154 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~-~~~~~~g~-~~~~~~~~~~~~~~~~~~v~~ 154 (538)
...++++|||||+||++||+.|++ .|++|+|+|+++.++.+-. +...++-. .+.--+.+-+.+...+-++++
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~------~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l 195 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELAD------MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIEL 195 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHH------cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceee
Confidence 455899999999999999999999 6789999999998665522 11211111 111111122223323334444
Q ss_pred EE-eeEEEEcCCC-CcC----------------------cCCC--------------ce---------------------
Q 009310 155 FK-DRVKLLCPSD-HLG----------------------VNGP--------------MA--------------------- 175 (538)
Q Consensus 155 ~~-~~v~~i~~~~-~~~----------------------~~~~--------------~~--------------------- 175 (538)
++ .+|+.++-.. ++. ++.- .+
T Consensus 196 ~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~ 275 (622)
T COG1148 196 ITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIE 275 (622)
T ss_pred eeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhcc
Confidence 43 2444432110 000 0000 00
Q ss_pred ------eecccEEEcCCc---eEEEeeEEEEeCCCCCCCCCCCCccccCcC-CCChHHHHHHHHHHHHH---HH---hcc
Q 009310 176 ------CTHGGTVLLESG---LIVEYDWLVLSLGAEPKLDVVPGAAEFAFP-FSTLEDACRVDRKLSEL---ER---RNF 239 (538)
Q Consensus 176 ------~~~~~~v~~~~g---~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~-~~~~~d~~~~~~~l~~~---~~---~~~ 239 (538)
.-..+.+..+.. .++..-.+|+|||-.++.+.-.. ++.+. +.+.-...++...+..- .+ +..
T Consensus 276 c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~--EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpS 353 (622)
T COG1148 276 CGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKE--EYGYGKYPNVITNLELERMLNPNGPTGGKVLRPS 353 (622)
T ss_pred chhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhh--hcCCCCCcchhhHHHHHHHhccCCCCCceEEecC
Confidence 000112222221 15677899999998876543221 22221 11222222232222110 00 011
Q ss_pred CCCCCCeEEEE---CCCh--------------hHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCC
Q 009310 240 GKDSLIRVAVV---GCGY--------------SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302 (538)
Q Consensus 240 ~~~~~~~VvVV---GgG~--------------~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~g 302 (538)
..+++++|+.| |+-. ..+..|..+.+..++.. |+++...-+.. +...-+...+.-++.|
T Consensus 354 dg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~-v~I~YmDiRaf---G~~yEefY~~~Q~~~g 429 (622)
T COG1148 354 DGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTD-VTIYYMDIRAF---GKDYEEFYVRSQEDYG 429 (622)
T ss_pred CCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcc-eeEEEEEeecc---CccHHHHHHhhhhhhc
Confidence 23467898876 5332 23344445555444433 66665544432 2223333333334789
Q ss_pred CEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCC
Q 009310 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 382 (538)
Q Consensus 303 V~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~ 382 (538)
|+++.+ ++.+|.+..+ +.++++.+++..+ .-.++++|+||+++|+.|... .+...
T Consensus 430 V~fIRG-rvaei~e~p~----------------------~~l~V~~EdTl~g-~~~e~~~DLVVLa~Gmep~~g-~~kia 484 (622)
T COG1148 430 VRFIRG-RVAEIAEFPK----------------------KKLIVRVEDTLTG-EVKEIEADLVVLATGMEPSEG-AKKIA 484 (622)
T ss_pred hhhhcC-ChHHheeCCC----------------------CeeEEEEEeccCc-cceecccceEEEeeccccCcc-hHHHH
Confidence 999987 4566655442 4466666655555 567899999999999998622 11111
Q ss_pred CccCCCCcCCCCCeeeC-CCcccC--CCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 383 NRLHDLPLNARGQAETD-ETLCVK--GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 383 ~~~~~~~l~~~G~i~vd-~~l~~~--~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
..+|+..+++|++... +.++.. ..++||.+|-|.. |+.+..++.||..+|......+..
T Consensus 485 -~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg---------PkdI~~siaqa~aAA~kA~~~l~~ 546 (622)
T COG1148 485 -KILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG---------PKDIADSIAQAKAAAAKAAQLLGR 546 (622)
T ss_pred -HhcCcccCCCCccccCCCCcccccccCCcEEEeecccC---------CccHHHHHHHhHHHHHHHHHHhhc
Confidence 1458899999999887 666531 5689999998887 899999999999999887766643
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.54 E-value=3.7e-13 Score=139.20 Aligned_cols=172 Identities=17% Similarity=0.042 Sum_probs=114.3
Q ss_pred EEECCChhHHHHH-HHHHHHHHhcC-cEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEecccccccccc
Q 009310 248 AVVGCGYSGVELA-ATVSERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVK 325 (538)
Q Consensus 248 vVVGgG~~g~E~A-~~l~~~~~~~~-~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~ 325 (538)
.|++.+.+|+|.+ ..+.+.....+ .|+++...+..++.. ++.+.+.+.+++.|+++++++.|.+++.++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~------- 289 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEG------- 289 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-------
Confidence 6788899999999 55543322222 299998888777764 688888999999999999999999998654
Q ss_pred CCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCCC---CccCCCCcC-----------
Q 009310 326 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN---NRLHDLPLN----------- 391 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~~---~~~~~~~l~----------- 391 (538)
+++..... ..+....+++|.||+|+|..+...+..... ...+++++.
T Consensus 290 ----------------~~V~~v~~---~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~ 350 (422)
T PRK05329 290 ----------------GRVTAVWT---RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQR 350 (422)
T ss_pred ----------------CEEEEEEe---eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhh
Confidence 33332111 111345689999999999877654421110 011233220
Q ss_pred --------CCCCeeeCCCccc------CCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 392 --------ARGQAETDETLCV------KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 392 --------~~G~i~vd~~l~~------~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
..-.|.||+.|+. +..+|+||+|++...+++-.+. .-.-.|+..|..|+++|.+..
T Consensus 351 ~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~--~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 351 DFFAPHPFLQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREG--CGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred hhccCCchhhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhC--CCchhHHHHHHHHHHHHHHhh
Confidence 0113778888875 1379999999999987752111 122368899999999998654
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.36 E-value=4.9e-11 Score=118.21 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=37.9
Q ss_pred CcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 401 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 401 ~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
+|+.+..|++|.+|.+.....+.| .-+.++|...|..+++.+.+.+
T Consensus 362 Tmesk~vPGLyf~GEvlDv~g~tG---GYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 362 TMESKKVPGLYFAGEVLDVTGWTG---GYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred HHHhhcCCCcEEEEEEEEeccCCC---cHHHHHHHHHHHHHHHhhhhhc
Confidence 478888999999999998866655 3578889999999999987653
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.30 E-value=1.2e-10 Score=118.27 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=102.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc----cCcchh-----------------------hhhc
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FKPMLY-----------------------ELLS 131 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~----~~p~~~-----------------------~~~~ 131 (538)
+++|+|||||++|+.+|.+|.+... ..++ |+|||+.+.++ |.+..+ +.+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~--~~~~-Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~ 77 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPR--PSGL-ISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQ 77 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCC--CCCc-eEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHH
Confidence 3799999999999999999988542 2233 99999988542 222110 0111
Q ss_pred CC----CCC-----cccccc------------HHHHhccC---CcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCc
Q 009310 132 GE----VDA-----WEIAPR------------FADLLANT---GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187 (538)
Q Consensus 132 g~----~~~-----~~~~~~------------~~~~~~~~---~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g 187 (538)
+. .++ +...++ +..+++.. .+.+++.+.+++....+. ....++..+|
T Consensus 78 ~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~---------~~~~~~~~~g 148 (474)
T COG4529 78 KQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNA---------GGYLVTTADG 148 (474)
T ss_pred hcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCC---------ceEEEecCCC
Confidence 11 000 000000 11222222 267777777777655321 1236778889
Q ss_pred eEEEeeEEEEeCCCCCCCCCC-----CCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHH
Q 009310 188 LIVEYDWLVLSLGAEPKLDVV-----PGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT 262 (538)
Q Consensus 188 ~~~~yD~lVlAtG~~~~~p~i-----pG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~ 262 (538)
....+|-+|+|||..+..++. +|...++-..+.. +.+.. .+...+|+|+|+|.+-++....
T Consensus 149 ~~~~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~-------~~ld~-------v~~~drVli~GsgLt~~D~v~~ 214 (474)
T COG4529 149 PSEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPA-------NALDG-------VDADDRVLIVGSGLTSIDQVLV 214 (474)
T ss_pred CeeeeeEEEEeccCCCCCcchhhhccCCCcceeccccCC-------ccccc-------ccCCCceEEecCCchhHHHHHH
Confidence 899999999999976543332 2211111111111 11111 1124579999999999999999
Q ss_pred HHHHHHhcCcEEEEecCC
Q 009310 263 VSERLEEKGIVQAINVET 280 (538)
Q Consensus 263 l~~~~~~~~~Vtlv~~~~ 280 (538)
+...++. +.||++.|..
T Consensus 215 l~~~gh~-g~It~iSRrG 231 (474)
T COG4529 215 LRRRGHK-GPITAISRRG 231 (474)
T ss_pred HhccCCc-cceEEEeccc
Confidence 9886654 4499999865
No 96
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.22 E-value=9.3e-11 Score=92.63 Aligned_cols=70 Identities=30% Similarity=0.405 Sum_probs=66.5
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~ 318 (538)
+|+|||||++|+|+|..+++.+.+ |+++++.+.+++.+++.....+.+.|++.||++++++.+++++.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG 70 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence 689999999999999999987766 9999999999999999999999999999999999999999999876
No 97
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.90 E-value=8.3e-08 Score=98.44 Aligned_cols=154 Identities=16% Similarity=0.073 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhcCcEEEEecCCccCCCC-ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCccccc
Q 009310 257 VELAATVSERLEEKGIVQAINVETTICPTG-TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335 (538)
Q Consensus 257 ~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~-~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~ 335 (538)
.++..+|.+... ..+++- +.+-|.. +..+.+.+.+.++++|++++.+..|.++..++
T Consensus 236 ~~~~~~L~~~~g----~~v~E~-ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~----------------- 293 (419)
T TIGR03378 236 LELLRELEQATG----LTLCEL-PTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG----------------- 293 (419)
T ss_pred HHHHHHHHHHHC----CCEEeC-CCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-----------------
Confidence 355555544332 333433 3333433 46778889999999999999999999987654
Q ss_pred ccccCCCceEE-eecccccCCcceEEeccEEEEecCCC-CCCCCCCCCCC---ccCCCCcC-------------------
Q 009310 336 AADKNSDKYIL-ELQPAIKGLESQIFEADLVLWTVGSK-PLLPHVEPPNN---RLHDLPLN------------------- 391 (538)
Q Consensus 336 ~~~~~~~~v~~-~~~~~~~~~~g~~l~~D~vI~a~G~~-p~~~~l~~~~~---~~~~~~l~------------------- 391 (538)
+.++. ... ++ ....+.+|.+|+|+|.- .. .++...+. ..+++++.
T Consensus 294 ------~~v~~V~t~---~g-~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~ 362 (419)
T TIGR03378 294 ------NRVTRIHTR---NH-RDIPLRADHFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPF 362 (419)
T ss_pred ------CeEEEEEec---CC-ccceEECCEEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChh
Confidence 33332 111 11 12579999999999987 33 22221110 12233331
Q ss_pred CCCCeeeCCCcccC----CCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHH
Q 009310 392 ARGQAETDETLCVK----GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 445 (538)
Q Consensus 392 ~~G~i~vd~~l~~~----~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i 445 (538)
..-.|.||+.||.. ..+|+||+|-+....|+-... .-.-.|+..|..||++|
T Consensus 363 ~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~g--cG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 363 MQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEG--CGSGVAVSTALHAAEQI 418 (419)
T ss_pred hhcCceEccccCccCCCcccccceEechhhcCCChHhcC--CCchhHHHHHHHHHHhh
Confidence 11248899999941 379999999999987762111 11236888899999887
No 98
>PRK09897 hypothetical protein; Provisional
Probab=98.89 E-value=1.4e-08 Score=108.16 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=96.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc----cCcc---------------------hhhhhc--
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FKPM---------------------LYELLS-- 131 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~----~~p~---------------------~~~~~~-- 131 (538)
+++|+||||||+|+++|.+|.+.. ...+|+|||++...+ |.+. +.+.+.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~----~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~ 76 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQ----TPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ 76 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcC----CCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhh
Confidence 368999999999999999998732 457999999976432 2210 000100
Q ss_pred -----------------CCCCCcccc-cc----HHHH---hccCC--cEEEEe-eEEEEcCCCCcCcCCCceeecccEEE
Q 009310 132 -----------------GEVDAWEIA-PR----FADL---LANTG--VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVL 183 (538)
Q Consensus 132 -----------------g~~~~~~~~-~~----~~~~---~~~~~--v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~ 183 (538)
+.+-+..+. .+ +..+ +...+ +.++.. +|+++...... ..+.
T Consensus 77 ~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-----------~~V~ 145 (534)
T PRK09897 77 EDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-----------VMLA 145 (534)
T ss_pred hHHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-----------EEEE
Confidence 001111100 00 1111 12233 565544 88888654321 2455
Q ss_pred cCC-ceEEEeeEEEEeCCCCCCCCCCCCccccCcCCCChHHHHHHHHHHHHHHHhccCCCCCCeEEEECCChhHHHHHHH
Q 009310 184 LES-GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT 262 (538)
Q Consensus 184 ~~~-g~~~~yD~lVlAtG~~~~~p~ipG~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~VvVVGgG~~g~E~A~~ 262 (538)
+++ +..+.+|+||||||..+..+ .++...+ +.+..+.... ..+ ++.+|+|+|.|.++++++..
T Consensus 146 t~~gg~~i~aD~VVLAtGh~~p~~-~~~~~~y---i~~pw~~~~~-~~i-----------~~~~V~I~GtGLt~iD~v~~ 209 (534)
T PRK09897 146 TNQDLPSETFDLAVIATGHVWPDE-EEATRTY---FPSPWSGLME-AKV-----------DACNVGIMGTSLSGLDAAMA 209 (534)
T ss_pred ECCCCeEEEcCEEEECCCCCCCCC-Chhhccc---cCCCCcchhh-cCC-----------CCCeEEEECCCHHHHHHHHH
Confidence 544 46789999999999753111 1111111 1111111110 111 14699999999999999999
Q ss_pred HHHHHH------------------hcCcEEEEecCCc
Q 009310 263 VSERLE------------------EKGIVQAINVETT 281 (538)
Q Consensus 263 l~~~~~------------------~~~~Vtlv~~~~~ 281 (538)
|...+. +...|+++.|...
T Consensus 210 Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 210 VAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 986531 2345888888654
No 99
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.85 E-value=7.3e-09 Score=107.09 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=46.2
Q ss_pred EEEecCCccCCCC--ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeeccc
Q 009310 274 QAINVETTICPTG--TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 351 (538)
Q Consensus 274 tlv~~~~~~l~~~--~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 351 (538)
+.++...++.|.. ...+.+.+++.+++.||+++++++|.++..+++ +.+.++..
T Consensus 93 ~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~----------------------~~f~v~~~-- 148 (409)
T PF03486_consen 93 TKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED----------------------GVFGVKTK-- 148 (409)
T ss_dssp EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT----------------------EEEEEEET--
T ss_pred EEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC----------------------ceeEeecc--
Confidence 4455566766654 345668888999999999999999999976542 22555532
Q ss_pred ccCCcceEEeccEEEEecCCCCC
Q 009310 352 IKGLESQIFEADLVLWTVGSKPL 374 (538)
Q Consensus 352 ~~~~~g~~l~~D~vI~a~G~~p~ 374 (538)
++..+.+|.||+|+|-...
T Consensus 149 ----~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 149 ----NGGEYEADAVILATGGKSY 167 (409)
T ss_dssp ----TTEEEEESEEEE----SSS
T ss_pred ----CcccccCCEEEEecCCCCc
Confidence 6789999999999997643
No 100
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.79 E-value=1.6e-07 Score=100.15 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=41.4
Q ss_pred eeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 009310 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 455 (538)
Q Consensus 397 ~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~ 455 (538)
.++.+|+++..+|+|++|+++.. .-...|..||-+|+.|+...+.++++.
T Consensus 347 ~l~~~le~k~~~gLf~AGqi~Gt---------~Gy~eAaa~Gl~Ag~naa~~~~~~~~~ 396 (617)
T TIGR00136 347 QLKPTLETKLIQGLFFAGQINGT---------TGYEEAAAQGLMAGINAALKLQNKEPF 396 (617)
T ss_pred hCchhheeCCCCCeEEccccCCc---------chHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45678999779999999998874 225689999999999999999987643
No 101
>PLN02463 lycopene beta cyclase
Probab=98.76 E-value=4e-08 Score=103.09 Aligned_cols=113 Identities=18% Similarity=0.286 Sum_probs=73.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc-------h-----hhhhcCCC---------
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM-------L-----YELLSGEV--------- 134 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~-------~-----~~~~~g~~--------- 134 (538)
....+||+||||||||+++|..|++ .|++|+|||+++...+... + ...+....
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~------~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~ 98 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSE------AGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDD 98 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHH------CCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeC
Confidence 3445899999999999999999998 6889999999764322110 0 00000000
Q ss_pred -------------CCccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCC
Q 009310 135 -------------DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (538)
Q Consensus 135 -------------~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~ 201 (538)
+...+...+.+.+...+++++.++|+++...... ..|.+++|..+.+|.||.|+|.
T Consensus 99 ~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~-----------~~V~~~dG~~i~A~lVI~AdG~ 167 (447)
T PLN02463 99 GKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESK-----------SLVVCDDGVKIQASLVLDATGF 167 (447)
T ss_pred CCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCe-----------EEEEECCCCEEEcCEEEECcCC
Confidence 0000011122223456899988888888654321 2577788889999999999998
Q ss_pred CCCC
Q 009310 202 EPKL 205 (538)
Q Consensus 202 ~~~~ 205 (538)
....
T Consensus 168 ~s~l 171 (447)
T PLN02463 168 SRCL 171 (447)
T ss_pred CcCc
Confidence 7543
No 102
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.68 E-value=2.2e-08 Score=109.17 Aligned_cols=103 Identities=13% Similarity=0.041 Sum_probs=63.9
Q ss_pred CCeEEEECCCh--hHHHHHHHHHHHHHhcCcEEEEecCCccCCC--------------CChhhHHHHHHHHHhCCCEEEc
Q 009310 244 LIRVAVVGCGY--SGVELAATVSERLEEKGIVQAINVETTICPT--------------GTPGNREAALKVLSARKVQLVL 307 (538)
Q Consensus 244 ~~~VvVVGgG~--~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~--------------~~~~~~~~~~~~l~~~gV~v~~ 307 (538)
+.++.|+|++. ++.|++..+...+.. ++++.+...++.. ....+.+.+.+.+++.||++++
T Consensus 157 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~ 233 (574)
T PRK12842 157 LKTITFIGMMFNSSNADLKHFFNATRSL---TSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT 233 (574)
T ss_pred cccccccceecccchHHHHHHHhhccch---hHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence 56888999988 788887776543332 3332222222211 1234566677888899999999
Q ss_pred CceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEecc-EEEEecCCCCC
Q 009310 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD-LVLWTVGSKPL 374 (538)
Q Consensus 308 ~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D-~vI~a~G~~p~ 374 (538)
++.|+++..+++.. .+|++. ..+....+.++ .||+|+|--++
T Consensus 234 ~~~v~~l~~~~g~V--------------------~GV~~~-----~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 234 GTPARELLTEGGRV--------------------VGARVI-----DAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCEEEEEEeeCCEE--------------------EEEEEE-----cCCceEEEEeCCEEEEcCCCccc
Confidence 99999987643211 244443 11122357786 79999997763
No 103
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.66 E-value=6.9e-07 Score=94.71 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=37.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
..+++|+|||||.|||+||.+|.+.+. .+|++|+|+|+++..+..
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~--~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQ--MPGENITILEELDVPGGS 64 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccC--CCCCcEEEEeCCCCCCCC
Confidence 345899999999999999999998431 258899999999976554
No 104
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.57 E-value=1.3e-06 Score=90.90 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEe
Q 009310 289 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368 (538)
Q Consensus 289 ~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a 368 (538)
.+.+.+.+.+++.|++++.++.|+++..++ +.+++.+. +++++.+|.||.|
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~~~a~~vV~A 164 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA-----------------------DRVRLRLD------DGRRLEAALAIAA 164 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC-----------------------CeEEEEEC------CCCEEEeCEEEEe
Confidence 455666777888899999999999998754 45555542 5678999999999
Q ss_pred cCCCCC
Q 009310 369 VGSKPL 374 (538)
Q Consensus 369 ~G~~p~ 374 (538)
.|....
T Consensus 165 dG~~S~ 170 (392)
T PRK08773 165 DGAAST 170 (392)
T ss_pred cCCCch
Confidence 999875
No 105
>PRK06847 hypothetical protein; Provisional
Probab=98.54 E-value=3.3e-07 Score=94.78 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=32.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
++++|+|||||+||+++|..|++ .|++|+|+|+++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~------~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR------AGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCC
Confidence 35799999999999999999998 6889999999763
No 106
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.54 E-value=8.1e-07 Score=88.67 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=76.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc---c--------CCCC-----ChhhHHHHHHHHHhCCCEEEcCc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT---I--------CPTG-----TPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~---~--------l~~~-----~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
+|+|||+|+.|+++|..|.+.+.+ |+++++.+. + .+.+ +.++...+.+.+++.|+++++ .
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~ 77 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-E 77 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-E
Confidence 699999999999999999887655 999997541 1 1222 245667788888999999999 8
Q ss_pred eeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCC
Q 009310 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378 (538)
Q Consensus 310 ~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l 378 (538)
.|..++.++ +.+.+... ++.++.+|.+|+|+|.+|+.+.+
T Consensus 78 ~v~~v~~~~-----------------------~~~~v~~~------~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 78 EVIKVDLSD-----------------------RPFKVKTG------DGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEEEEecC-----------------------CeeEEEeC------CCCEEEeCEEEECCCCCcccCCC
Confidence 898888754 34444432 56789999999999999875433
No 107
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.52 E-value=1.5e-06 Score=94.06 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=32.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...||||||+|.|||.||..+++ .|.+|+|+||...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae------~G~~VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARR------AGRRVLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCeEEEEEccCC
Confidence 45899999999999999999998 6789999999764
No 108
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.50 E-value=3.4e-07 Score=95.17 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=67.0
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc-------ch-----hhhh----cCCC--C-C-----
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-------ML-----YELL----SGEV--D-A----- 136 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p-------~~-----~~~~----~g~~--~-~----- 136 (538)
||+|||||+||+++|..|++ .|++|+|||+++...+.. .+ .... .+.. . .
T Consensus 1 DviIiGaG~AGl~~A~~la~------~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR------PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRK 74 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchh
Confidence 69999999999999999988 688999999876433210 00 0000 0000 0 0
Q ss_pred ----------ccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC
Q 009310 137 ----------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203 (538)
Q Consensus 137 ----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~ 203 (538)
..+...+.+.+...+++++.+++..+...... ...+.++++..+.+|.||.|+|..+
T Consensus 75 ~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~----------~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 75 LGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVA----------LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCc----------eeEEEeCCCCEEEeCEEEECCCCch
Confidence 00011122223345788887788877544110 1246667777899999999999876
No 109
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.50 E-value=3.6e-07 Score=90.84 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+||+|||||+||+++|..|++ .|.+|+|||+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~------~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCC
Confidence 589999999999999999998 6889999999864
No 110
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.50 E-value=1.8e-06 Score=88.24 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceE-EeecccccCCcceEEeccEEE
Q 009310 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADLVL 366 (538)
Q Consensus 288 ~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~g~~l~~D~vI 366 (538)
..+...+.+.+++.|++++.+++|+++..++ +.++ +.+. +|+ +.+|.||
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-----------------------~~v~gv~~~------~g~-i~ad~vV 196 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-----------------------GRVTGVRTS------DGE-IRADRVV 196 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET-----------------------TEEEEEEET------TEE-EEECEEE
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc-----------------------ccccccccc------ccc-cccceeE
Confidence 5677888888999999999999999999866 4454 5432 666 9999999
Q ss_pred EecCCCCC
Q 009310 367 WTVGSKPL 374 (538)
Q Consensus 367 ~a~G~~p~ 374 (538)
+|+|....
T Consensus 197 ~a~G~~s~ 204 (358)
T PF01266_consen 197 LAAGAWSP 204 (358)
T ss_dssp E--GGGHH
T ss_pred ecccccce
Confidence 99998654
No 111
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.49 E-value=3.6e-07 Score=99.19 Aligned_cols=72 Identities=8% Similarity=-0.099 Sum_probs=52.5
Q ss_pred CCeEEEECCChhHHHHHHH-------HHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEec
Q 009310 244 LIRVAVVGCGYSGVELAAT-------VSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~-------l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~ 316 (538)
++..+++|++..++|.+.. +.+++.+ |+++.............+...+.+.+++.||++++++.++++..
T Consensus 160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~ 236 (557)
T PRK07843 160 PLNMVVMQQDYVWLNLLKRHPRGVLRALKVGAR---TLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV 236 (557)
T ss_pred cccccccHHHHHHHHhhhcCchhHHHHHHHHHH---HHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE
Confidence 5678899999999998754 4444444 44444434444455667778888899999999999999999976
Q ss_pred cc
Q 009310 317 VG 318 (538)
Q Consensus 317 ~~ 318 (538)
++
T Consensus 237 ~~ 238 (557)
T PRK07843 237 ED 238 (557)
T ss_pred eC
Confidence 43
No 112
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.47 E-value=6e-07 Score=93.54 Aligned_cols=99 Identities=15% Similarity=0.285 Sum_probs=72.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+||++.+.+. .......+...+.+.+++.+++++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~~l----------~~~~~~~~~~~l~~~l~~~GV~i~~~~ 207 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQ------RRCKVTVIELAATVM----------GRNAPPPVQRYLLQRHQQAGVRILLNN 207 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCcch----------hhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4789999999999999999988 677999999987631 11111222234455566789999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~ 205 (538)
.++.++..... .+.+.+|+.+.+|.||+|+|..|+.
T Consensus 208 ~V~~i~~~~~~------------~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 208 AIEHVVDGEKV------------ELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred eeEEEEcCCEE------------EEEECCCCEEECCEEEECCCCChhh
Confidence 77787542221 4566778889999999999998753
No 113
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.46 E-value=1.6e-06 Score=77.90 Aligned_cols=107 Identities=26% Similarity=0.346 Sum_probs=65.1
Q ss_pred EEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc---ccCcc-----hhhhhcCCC--------------------
Q 009310 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF---VFKPM-----LYELLSGEV-------------------- 134 (538)
Q Consensus 83 VIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~---~~~p~-----~~~~~~g~~-------------------- 134 (538)
+|||||++|++++.+|.+.. ......+|+|||+++.. .|.+. +.....+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 59999999999999999863 11367899999996632 11110 000000000
Q ss_pred ------CCcccccc----------HHHHhcc--C--CcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeE
Q 009310 135 ------DAWEIAPR----------FADLLAN--T--GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194 (538)
Q Consensus 135 ------~~~~~~~~----------~~~~~~~--~--~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~ 194 (538)
....+.++ +..+.+. . .+.++..+|+.++....- ..+.+.+|..+.+|+
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~-----------~~v~~~~g~~~~~d~ 148 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG-----------YRVVTADGQSIRADA 148 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc-----------EEEEECCCCEEEeCE
Confidence 00111000 1111111 1 356677899999766542 357788889999999
Q ss_pred EEEeCCC
Q 009310 195 LVLSLGA 201 (538)
Q Consensus 195 lVlAtG~ 201 (538)
||||||.
T Consensus 149 VvLa~Gh 155 (156)
T PF13454_consen 149 VVLATGH 155 (156)
T ss_pred EEECCCC
Confidence 9999995
No 114
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.45 E-value=1.1e-05 Score=78.42 Aligned_cols=180 Identities=12% Similarity=0.071 Sum_probs=107.3
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC--------------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------------------------------------- 286 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~-------------------------------------- 286 (538)
..|+|||+|++|+-+|..+++.+.+ |.++++...+....
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd 102 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVAD 102 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceecc
Confidence 4799999999999999999886655 99999765432110
Q ss_pred ChhhHHHHHHHHHhCCCEEEcCceeeEEecccc-ccccccCCCCCcccccccccCCCceEEeecccc---cCCcceEEec
Q 009310 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGE-FEASVKQPESGAIPNIAADKNSDKYILELQPAI---KGLESQIFEA 362 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~g~~l~~ 362 (538)
...+...+.+..++.|++++.++.|.++..+++ .. .++.+...... ...+...+.+
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V--------------------~Gvv~~~~~v~~~g~~~~~~~i~A 162 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRV--------------------AGVVINWTPVEMAGLHVDPLTIEA 162 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcE--------------------EEEEEccccccccCCCCCcEEEEc
Confidence 112233455566778999999999988865331 00 22332211000 0114468999
Q ss_pred cEEEEecCCCCCCC-CCC----CCCCc---cCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHH
Q 009310 363 DLVLWTVGSKPLLP-HVE----PPNNR---LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434 (538)
Q Consensus 363 D~vI~a~G~~p~~~-~l~----~~~~~---~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A 434 (538)
+.||.|+|...... .+. .+... ......+......|+.+-++ +|++|++|-+++..+ |.|......-+
T Consensus 163 k~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~~~rmg~~fg~ 238 (257)
T PRK04176 163 KAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--GLPRMGPIFGG 238 (257)
T ss_pred CEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--CCCccCchhHh
Confidence 99999999754311 000 00000 00111122223444555554 899999999987644 33333333333
Q ss_pred -HHHHHHHHHHHHHHHCC
Q 009310 435 -FQQADFAGWNLWAAIND 451 (538)
Q Consensus 435 -~~qg~~aa~~i~~~l~~ 451 (538)
.-.|+.+|.-|...+..
T Consensus 239 m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 239 MLLSGKKVAELILEKLKK 256 (257)
T ss_pred HHHhHHHHHHHHHHHhhc
Confidence 46899999999987754
No 115
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.45 E-value=5.9e-06 Score=86.91 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=33.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
.++||+||||||||++||..|++ .|++|+|||+.+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~------~G~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR------EGAQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh------CCCeEEEEEcCCCCC
Confidence 35899999999999999999998 788999999987643
No 116
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.43 E-value=8.3e-07 Score=92.22 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+..+|+|||||+||+++|..|++ .|++|+|+|+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ------SGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCC
Confidence 45799999999999999999998 6889999999765
No 117
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.43 E-value=3.5e-06 Score=87.82 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=36.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~ 125 (538)
+++||+||||||||++||+.|++ .|++|+|+|+.+....++.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~------~G~~VlvlEk~~~~G~k~~ 43 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK------AGLDVLVLEKGSEPGAKPC 43 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH------cCCeEEEEecCCCCCCCcc
Confidence 46899999999999999999999 6789999999987655554
No 118
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.43 E-value=1.7e-06 Score=88.22 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (538)
++|+|||||+||+++|..|++ .|++|+|||+.+....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~------~G~~v~i~E~~~~~~~ 38 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR------AGIDVTIIERRPDPRP 38 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH------TTCEEEEEESSSSCCC
T ss_pred ceEEEECCCHHHHHHHHHHHh------cccccccchhcccccc
Confidence 589999999999999999999 7889999999876433
No 119
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.43 E-value=1.1e-06 Score=91.00 Aligned_cols=100 Identities=25% Similarity=0.367 Sum_probs=74.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .+.+|+++++.+.+. ....+......+.+.+++.+++++.+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~------~g~~Vtlv~~~~~~l----------~~~~~~~~~~~l~~~l~~~gV~i~~~~ 204 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCR------AGKAVTLVDNAASLL----------ASLMPPEVSSRLQHRLTEMGVHLLLKS 204 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCccc----------chhCCHHHHHHHHHHHHhCCCEEEECC
Confidence 4689999999999999999988 678999999987632 11111223344556677789999874
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~ 205 (538)
.++.+..+... ..+.+.++..+.+|.||+|+|..|+.
T Consensus 205 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 205 QLQGLEKTDSG-----------IRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred eEEEEEccCCE-----------EEEEEcCCcEEECCEEEECcCCCcch
Confidence 78888654321 14666788899999999999998753
No 120
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.42 E-value=2.6e-06 Score=91.14 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=41.5
Q ss_pred CCCCeeeCCCcccCCCCCEEEcccccc-ccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 392 ARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 392 ~~G~i~vd~~l~~~~~~~VfaiGD~~~-~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
-.|.|.||...|+ ..|++||+|+|+. ......+........+.-.|+.++.++....
T Consensus 332 t~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 332 TCGGISVDDHGRT-TVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred ecCCEEECCCCcc-cCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3578999999998 8999999999974 2221112223456678899999999987653
No 121
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.42 E-value=4.1e-06 Score=91.36 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=43.2
Q ss_pred CCCCeeeCCCcccCCCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 392 ARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 392 ~~G~i~vd~~l~~~~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
..|.|.||...++ ..|++||+|+|+.. .+...+.-......|+-.|+.++.+++..+.+
T Consensus 357 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 357 TMGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred eCCCEEECCCCcc-ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3578999999998 89999999999752 11111111345667888999999999877654
No 122
>PLN02697 lycopene epsilon cyclase
Probab=98.42 E-value=9.7e-07 Score=94.28 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=67.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc--c---Ccch-----hhhhc------------CCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV--F---KPML-----YELLS------------GEV 134 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~--~---~p~~-----~~~~~------------g~~ 134 (538)
...+||+||||||||+++|..|++ .|++|+|||+...+. + ...+ ...+. +..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak------~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~ 179 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAK------LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKP 179 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHh------CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCce
Confidence 345899999999999999999998 788999999853221 1 0000 00000 000
Q ss_pred ----------CCccccccHHHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCC
Q 009310 135 ----------DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203 (538)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~ 203 (538)
+...+...+.+.+...+++++.++|+.+..+... + ..+...++..+.+|.||.|+|...
T Consensus 180 ~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~------~----~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 180 IMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDG------L----RLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCc------E----EEEEEcCCcEEECCEEEECCCcCh
Confidence 0000011122223445888888888888643221 0 023445677899999999999875
No 123
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.41 E-value=8.8e-07 Score=69.78 Aligned_cols=69 Identities=26% Similarity=0.417 Sum_probs=54.0
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-eE
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-RV 159 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~v 159 (538)
+|+|||||+.|+.+|..|++ .|.+|+||++++.+. .....++...+.+.+++.+++++.+ .+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~------~g~~vtli~~~~~~~-----------~~~~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE------LGKEVTLIERSDRLL-----------PGFDPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TTSEEEEEESSSSSS-----------TTSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred CEEEECcCHHHHHHHHHHHH------hCcEEEEEeccchhh-----------hhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 68999999999999999998 678999999998732 2222344455677788889999985 78
Q ss_pred EEEcCCC
Q 009310 160 KLLCPSD 166 (538)
Q Consensus 160 ~~i~~~~ 166 (538)
+.+..+.
T Consensus 64 ~~i~~~~ 70 (80)
T PF00070_consen 64 KEIEKDG 70 (80)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 8886544
No 124
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=1.4e-06 Score=92.00 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=71.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||++|+++|..|++ .|.+|+|+++++.+. . .. ..++...+.+.+++.+++++.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l---------~-~~-~~~~~~~~~~~l~~~GI~i~~~~ 219 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNK------LGSKVTVLDAASTIL---------P-RE-EPSVAALAKQYMEEDGITFLLNA 219 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCccC---------C-CC-CHHHHHHHHHHHHHcCCEEEcCC
Confidence 4789999999999999999988 577999999987631 1 11 1222334456667789999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
+++.++.+... ..+. .++.++.||.||+|+|..|+..
T Consensus 220 ~V~~i~~~~~~-----------v~v~-~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 220 HTTEVKNDGDQ-----------VLVV-TEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEEEEEecCCE-----------EEEE-ECCeEEEcCEEEEeeCCCCCcc
Confidence 78888654321 0222 3456899999999999998754
No 125
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.40 E-value=1.2e-06 Score=85.17 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
...+||+||||||||++||+.|++ .|++|+|||++...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~------~G~~V~liEk~~~~ 60 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAK------AGLKVAVFERKLSF 60 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHh------CCCeEEEEecCCCC
Confidence 345899999999999999999998 78899999998754
No 126
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=6.5e-06 Score=89.30 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=43.0
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.|.||...|+ ..|++||+|+++...+...+.-......|+..|+.++++++..+.+
T Consensus 348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 348 MGGIRINEDCET-NIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred cCCEEECCCCcc-cCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 477999999997 8999999999975322211112334567889999999999877654
No 127
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.37 E-value=1.8e-06 Score=90.99 Aligned_cols=99 Identities=21% Similarity=0.345 Sum_probs=72.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||++|+.+|..|++ .|.+|+++++.+.+.. ... ..++...+.+.+++.+++++.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~~~---------~~~-~~~~~~~~~~~l~~~gV~v~~~~ 200 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRE------RGKNVTLIHRSERILN---------KLF-DEEMNQIVEEELKKHEINLRLNE 200 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------CCCcEEEEECCcccCc---------ccc-CHHHHHHHHHHHHHcCCEEEeCC
Confidence 4799999999999999999998 5779999999875311 011 1233344566677789999874
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.+.+++.+.. .+.+.++..+.+|.||+|+|..|+..
T Consensus 201 ~v~~i~~~~~-------------~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 201 EVDSIEGEER-------------VKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred EEEEEecCCC-------------EEEEcCCCEEEeCEEEECCCccCCHH
Confidence 7888875443 13445677899999999999987643
No 128
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.37 E-value=1.8e-06 Score=90.55 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=33.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...+||+|||||+||+++|..|++ .|++|+|||+.+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 52 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKD------SGLRIALIEAQPA 52 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhc------CCCEEEEEecCCc
Confidence 345899999999999999999998 7899999999764
No 129
>PRK06834 hypothetical protein; Provisional
Probab=98.36 E-value=1.7e-06 Score=92.46 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~------~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL------AGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCC
Confidence 4799999999999999999999 7889999999763
No 130
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.35 E-value=1.4e-06 Score=90.52 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=30.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
+||+||||||||+++|+.|++ .|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~------~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR------AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEECC
Confidence 589999999999999999998 68899999997
No 131
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=2.4e-06 Score=91.21 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||++|+++|..|++ .|.+|+|||+.+.+. .. ...++...+.+.+++.+++++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~------~g~~Vtli~~~~~il---------~~--~~~~~~~~l~~~l~~~gI~i~~~~ 242 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLAD------FGVEVTVVEAADRIL---------PT--EDAELSKEVARLLKKLGVRVVTGA 242 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------cCCeEEEEEecCccC---------Cc--CCHHHHHHHHHHHHhcCCEEEeCc
Confidence 4799999999999999999998 577999999987631 11 11233345556677789999986
Q ss_pred eEEEEcC--CCCcCcCCCceeecccEEEcCCc--eEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCP--SDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~--~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lVlAtG~~~~~p~ 207 (538)
+++.++. +.+. ..+...+| ..+.+|.||+|+|..|+...
T Consensus 243 ~v~~i~~~~~~~~-----------~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 243 KVLGLTLKKDGGV-----------LIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEEEEEEecCCCE-----------EEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 7888863 2221 01223344 46999999999999987643
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.35 E-value=1.4e-06 Score=91.03 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.++|+|||||++|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG------SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc------CCCEEEEEcCCC
Confidence 3699999999999999999998 788999999875
No 133
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.34 E-value=1.7e-06 Score=92.67 Aligned_cols=44 Identities=23% Similarity=0.140 Sum_probs=37.2
Q ss_pred eCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 398 vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
.+.+|+++..+++|.+|=.+.. .-...|..||-+|+-|.+..+.
T Consensus 350 L~~~Le~k~~~~lf~AGQinGt---------~GYeEaaaqGl~AgiNaa~~~~ 393 (618)
T PRK05192 350 LKPTLETKKIKGLFFAGQINGT---------TGYEEAAAQGLIAGINAALKVQ 393 (618)
T ss_pred cchhheecCCCCeEECcccCCC---------hHHHHHHHHHHHHHHHHHHHhc
Confidence 3467888889999999998875 3456799999999999998887
No 134
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.34 E-value=1e-06 Score=92.06 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+||+||||||+|+++|..|++.+ .|++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g----~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAA----PHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCC----CCCEEEEEeCCCc
Confidence 78999999999999999999832 3589999999753
No 135
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.34 E-value=4.4e-06 Score=87.02 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEE
Q 009310 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367 (538)
Q Consensus 288 ~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~ 367 (538)
..+.+.+.+.+++.|++++.++.|.++..++ +.+.+... ++ ++.+|.||+
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-----------------------~~~~V~~~------~g-~i~ad~vV~ 198 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA-----------------------NGVVVRTT------QG-EYEARTLIN 198 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-----------------------CeEEEEEC------CC-EEEeCEEEE
Confidence 5677778888899999999999999987644 34444421 33 699999999
Q ss_pred ecCCCCC
Q 009310 368 TVGSKPL 374 (538)
Q Consensus 368 a~G~~p~ 374 (538)
|+|....
T Consensus 199 A~G~~s~ 205 (393)
T PRK11728 199 CAGLMSD 205 (393)
T ss_pred CCCcchH
Confidence 9998653
No 136
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.33 E-value=1.4e-06 Score=88.48 Aligned_cols=47 Identities=23% Similarity=0.180 Sum_probs=38.1
Q ss_pred eCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 009310 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (538)
Q Consensus 398 vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~ 453 (538)
++.+|+++..+|+|++|+.+.. .-...|..||-+++.|++..+++++
T Consensus 346 l~~~l~~k~~~~lf~AGqi~G~---------~Gy~eaaa~G~~ag~na~~~~~g~e 392 (392)
T PF01134_consen 346 LLNTLETKKIPGLFFAGQINGT---------EGYEEAAAQGLIAGINAARRLQGKE 392 (392)
T ss_dssp BBTTSBBSSSBTEEE-GGGGTB----------SHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred cccceEECCCCCceECCCCcch---------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3457888889999999999985 3467889999999999999998863
No 137
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.33 E-value=3.2e-06 Score=88.36 Aligned_cols=103 Identities=26% Similarity=0.399 Sum_probs=77.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
..+++++|||||+.|++.|..+++ -|.+|||||+.+++ ++ ....++...+.+.+++.++.+..
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~------LG~~VTiie~~~~i---------Lp--~~D~ei~~~~~~~l~~~gv~i~~ 233 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAA------LGSKVTVVERGDRI---------LP--GEDPEISKELTKQLEKGGVKILL 233 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCC---------CC--cCCHHHHHHHHHHHHhCCeEEEc
Confidence 456899999999999999999999 57799999999873 22 12355566677777777788887
Q ss_pred e-eEEEEcCCCCcCcCCCceeecccEEEcCCce--EEEeeEEEEeCCCCCCCCC
Q 009310 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 157 ~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~yD~lVlAtG~~~~~p~ 207 (538)
+ .++.+...... -.+.++++. .+.+|.+++|+|-+|+...
T Consensus 234 ~~~v~~~~~~~~~-----------v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 234 NTKVTAVEKKDDG-----------VLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred cceEEEEEecCCe-----------EEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 5 66666544320 146666655 6889999999998887664
No 138
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.33 E-value=1.9e-06 Score=89.00 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=68.7
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc------------hhhhhcCCCCC------------
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM------------LYELLSGEVDA------------ 136 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~------------~~~~~~g~~~~------------ 136 (538)
||+|||||+||+++|..|.+. ..|.+|+|||+++...+... +........+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~----~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADA----RPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhc----CCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 799999999999999999442 27899999998765422110 11111111100
Q ss_pred cc--c-ccc---H----HHHhccCCcEEEEeeEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCC
Q 009310 137 WE--I-APR---F----ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (538)
Q Consensus 137 ~~--~-~~~---~----~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~ 204 (538)
.. . ..+ + .+.+...++.++.+.|++|+..... ..+.+++|..+.++.||-|+|..+.
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-----------~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDG-----------VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCce-----------EEEEECCCCEEEeeEEEECCCcccc
Confidence 00 0 000 1 2222234677778899998766541 2577888889999999999996543
No 139
>PRK06184 hypothetical protein; Provisional
Probab=98.33 E-value=2.5e-06 Score=91.77 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
..+|+||||||+||++|..|++ .|++|+|||+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~------~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR------RGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 4799999999999999999999 788999999976
No 140
>PRK07236 hypothetical protein; Provisional
Probab=98.31 E-value=3.2e-06 Score=87.77 Aligned_cols=37 Identities=32% Similarity=0.571 Sum_probs=33.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+..+|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR------AGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCC
Confidence 345899999999999999999999 7889999999764
No 141
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.31 E-value=1.4e-05 Score=77.25 Aligned_cols=137 Identities=15% Similarity=0.036 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEE
Q 009310 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI 366 (538)
.-++.+.+.+.+++.|..++.+..|...+-.++.. ..+..+ +. ....+.+|..|
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v--------------------~~i~tr-----n~-~diP~~a~~~V 310 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRV--------------------TEIYTR-----NH-ADIPLRADFYV 310 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeE--------------------EEEEec-----cc-ccCCCChhHee
Confidence 44677889999999999999999998887654211 222222 11 22346689999
Q ss_pred EecCCCCCCCCCCCCC-C--ccCCCCc---------------CC----CCCeeeCCCcccCC----CCCEEEcccccccc
Q 009310 367 WTVGSKPLLPHVEPPN-N--RLHDLPL---------------NA----RGQAETDETLCVKG----HPRIFALGDSSALR 420 (538)
Q Consensus 367 ~a~G~~p~~~~l~~~~-~--~~~~~~l---------------~~----~G~i~vd~~l~~~~----~~~VfaiGD~~~~~ 420 (538)
+|+|.--...+..+-. + ..+++.+ .+ .=.+.+|+++|... ..|+||||-+....
T Consensus 311 LAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGf 390 (421)
T COG3075 311 LASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGF 390 (421)
T ss_pred eeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCC
Confidence 9998643322111100 0 0111111 00 11377888888632 47999999999987
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 421 DSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 421 ~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
++-... .-.-.|+..|..+|..|+....+
T Consensus 391 dpi~eg--cGsGVaivta~~aa~qi~~~~~~ 419 (421)
T COG3075 391 DPIAEG--CGSGVAIVTALHAAEQIAERAGG 419 (421)
T ss_pred cHHHhc--CCcchHHHHHHHHHHHHHHHhcc
Confidence 762111 12235777888888888876543
No 142
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.30 E-value=2.5e-06 Score=88.97 Aligned_cols=36 Identities=39% Similarity=0.624 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
++.+|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~------~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR------QGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh------CCCcEEEEeeCcc
Confidence 35799999999999999999998 7889999999874
No 143
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.30 E-value=2.8e-06 Score=89.63 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
..+++||+||||||||++||..|++ .|++|+|+|+..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~------~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAK------GGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 4566899999999999999999998 788999999875
No 144
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.30 E-value=3.3e-06 Score=89.94 Aligned_cols=101 Identities=24% Similarity=0.359 Sum_probs=73.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+++++.+.+. . .. ..++...+.+.+++.+++++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~-~~-~~~~~~~l~~~l~~~gV~i~~~~ 234 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYAS------LGAEVTIVEALPRIL---------P-GE-DKEISKLAERALKKRGIKIKTGA 234 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCCcC---------C-cC-CHHHHHHHHHHHHHcCCEEEeCC
Confidence 4789999999999999999988 678999999987631 1 11 1233345566677789999986
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCc---eEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG---LIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g---~~~~yD~lVlAtG~~~~~p~ 207 (538)
++++++.+... ..+.+.++ ..+.+|.||+|+|..|+...
T Consensus 235 ~V~~i~~~~~~-----------v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 235 KAKKVEQTDDG-----------VTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEEEeCCE-----------EEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 78888654321 12444344 57999999999999987653
No 145
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.30 E-value=2.9e-06 Score=86.73 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=28.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+|+|||+|.|||++|+.|.+ .++|+|+.|.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~-------~~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP-------SFRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC-------CCcEEEEeCCC
Confidence 89999999999999999986 37999999977
No 146
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.30 E-value=4.3e-06 Score=88.54 Aligned_cols=105 Identities=12% Similarity=0.169 Sum_probs=74.1
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC------CCCC----h---hhHHHHHHHHHhCCCEEEcCcee
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC------PTGT----P---GNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l------~~~~----~---~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
++|+|||||+.|+.+|..|++.+.+ ..|+++++.+.+. +.+. . .......+.+++.||+++.++.|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~-~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKE-LEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCC-CcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEE
Confidence 3799999999999999999876432 2399999987531 1110 1 11222345678899999999999
Q ss_pred eEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEe--ccEEEEecCCCCCCCCC
Q 009310 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHV 378 (538)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~--~D~vI~a~G~~p~~~~l 378 (538)
.+|+.+. +.++++. ..++..++ +|.+|+|+|.+|+.+.+
T Consensus 80 ~~id~~~-----------------------~~v~~~~-----~~~~~~~~~~yd~lviAtG~~~~~~~i 120 (444)
T PRK09564 80 VKVDAKN-----------------------KTITVKN-----LKTGSIFNDTYDKLMIATGARPIIPPI 120 (444)
T ss_pred EEEECCC-----------------------CEEEEEE-----CCCCCEEEecCCEEEECCCCCCCCCCC
Confidence 9998754 4566641 11345555 99999999999876543
No 147
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.30 E-value=3.4e-06 Score=89.82 Aligned_cols=100 Identities=20% Similarity=0.348 Sum_probs=72.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+|+.+.+. | . ...++...+.+.+++.+++++.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l--~--------~-~~~~~~~~~~~~l~~~gi~i~~~~ 232 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFAS------LGSKVTVIEMLDRIL--P--------G-EDAEVSKVVAKALKKKGVKILTNT 232 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCCCC--C--------C-CCHHHHHHHHHHHHHcCCEEEeCC
Confidence 4799999999999999999988 577999999987631 1 0 11223334556667789999886
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCc--eEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~yD~lVlAtG~~~~~p 206 (538)
++++++.+... ..+...++ ..+.+|.||+|+|..|+..
T Consensus 233 ~v~~i~~~~~~-----------v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 233 KVTAVEKNDDQ-----------VVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEEEeCCE-----------EEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 78888654321 02343445 4799999999999998755
No 148
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.29 E-value=1.7e-05 Score=85.42 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=33.0
Q ss_pred EEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc
Q 009310 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (538)
Q Consensus 82 VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p 124 (538)
|||||||.+||+||..|++ .|++|+|+|+++..+...
T Consensus 1 vvVIGaG~~GL~aA~~La~------~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA------AGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHh------CCCcEEEEECCCCCcCce
Confidence 6999999999999999999 788999999999865543
No 149
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=4.6e-06 Score=88.62 Aligned_cols=101 Identities=23% Similarity=0.358 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++++|||||++|+.+|..|++ .|.+|+|+++.+.+. .+ ...++...+.+.+++.+++++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~ll---------~~--~d~e~~~~l~~~L~~~GI~i~~~~ 232 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSR------LGTKVTIVEMAPQLL---------PG--EDEDIAHILREKLENDGVKIFTGA 232 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCcC---------cc--ccHHHHHHHHHHHHHCCCEEEECC
Confidence 4789999999999999999988 577999999987631 11 11233445566677789999986
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCc-eEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~yD~lVlAtG~~~~~p~ 207 (538)
+++.++.+... ..+..++. ..+.+|.|++|+|..|+...
T Consensus 233 ~V~~i~~~~~~-----------v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 233 ALKGLNSYKKQ-----------ALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EEEEEEEcCCE-----------EEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 78888654321 01222222 36899999999999887543
No 150
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.26 E-value=1.6e-05 Score=81.80 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=34.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
+++||||||||..|+++|+.|.++. ++++|+|+||.+...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~----p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE----PDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC----CCceEEEEEccCccc
Confidence 4589999999999999999999953 569999999988643
No 151
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.25 E-value=1.3e-05 Score=83.47 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEE
Q 009310 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI 366 (538)
...+.+.+.+.+++.|+++++++.|+++..++ +.+.+.. ++..+.+|.||
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-----------------------~~~~v~~-------~~~~i~ad~VI 153 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDD-----------------------NGFGVET-------SGGEYEADKVI 153 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-----------------------CeEEEEE-------CCcEEEcCEEE
Confidence 35677788888999999999999999997643 3344432 34578999999
Q ss_pred EecCCCC
Q 009310 367 WTVGSKP 373 (538)
Q Consensus 367 ~a~G~~p 373 (538)
+|+|...
T Consensus 154 lAtG~~s 160 (400)
T TIGR00275 154 LATGGLS 160 (400)
T ss_pred ECCCCcc
Confidence 9999753
No 152
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.25 E-value=3e-06 Score=88.04 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+||+|||||++|+++|..|++ .|++|+|||+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~------~G~~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR------AGASVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc------CCCeEEEEeCCCC
Confidence 4799999999999999999998 6889999999753
No 153
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.25 E-value=4.2e-06 Score=81.19 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
..+||+|||||||||+||+.|++ .|++|+|+|+++.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~------~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK------NGLKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCC
Confidence 35899999999999999999998 67899999998764
No 154
>PRK10015 oxidoreductase; Provisional
Probab=98.25 E-value=3.3e-06 Score=88.76 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
.++||+||||||||++||+.|++ .|++|+|||+.+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~------~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR------AGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCC
Confidence 34899999999999999999998 78899999998753
No 155
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.24 E-value=1.6e-05 Score=85.47 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=39.8
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
.|.|.||.+.|+ +.|++||+|+|+.. .+...+........+.-.|+.++.++....
T Consensus 332 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 332 MGGVKTNLDGET-SIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred cCCEEECCCCcc-cCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 477999999998 89999999999752 111112223355677888889988887543
No 156
>PRK09126 hypothetical protein; Provisional
Probab=98.24 E-value=6.4e-06 Score=85.74 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
++++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAG------SGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHh------CCCcEEEEeCCCc
Confidence 35899999999999999999998 7889999999764
No 157
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.24 E-value=6.8e-06 Score=82.17 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=73.5
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-----------------------C---------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-----------------------G--------------- 286 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-----------------------~--------------- 286 (538)
..|+|||||+.|+-+|..+++.+++ |.+++..+.+... .
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 4799999999999999999987776 8888875443211 0
Q ss_pred -----------------------------ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCccccccc
Q 009310 287 -----------------------------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 337 (538)
Q Consensus 287 -----------------------------~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
...+.+.+++.+++.||+++++++|.+++.++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~------------------- 141 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD------------------- 141 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-------------------
Confidence 02234556778899999999999999999865
Q ss_pred ccCCCceEEeecccccCCcceEEeccEEEEecCCC
Q 009310 338 DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372 (538)
Q Consensus 338 ~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~ 372 (538)
.+..+... +++++.||.+|+|+|-.
T Consensus 142 ----~~f~l~t~------~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 142 ----SGFRLDTS------SGETVKCDSLILATGGK 166 (408)
T ss_pred ----ceEEEEcC------CCCEEEccEEEEecCCc
Confidence 35566532 67789999999999944
No 158
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.23 E-value=3.8e-06 Score=87.41 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=31.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
..+||+|||||++|+++|..|++ .|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~------~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ------HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc------CCCEEEEEcCCC
Confidence 34899999999999999999998 688999999975
No 159
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.23 E-value=3.6e-06 Score=87.48 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
.++|+||||||+|+++|..|++ .|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~------~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR------AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh------CCCcEEEEccC
Confidence 4799999999999999999999 78999999998
No 160
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.23 E-value=3.8e-06 Score=87.51 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=31.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.||+||||||||++||+.|++ .|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~------~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS------AGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh------CCCcEEEEecCCC
Confidence 489999999999999999998 7889999998753
No 161
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.23 E-value=5.5e-06 Score=87.50 Aligned_cols=96 Identities=16% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++.+.+. ... ..++...+.+.+++.+++++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~~~l~----------~~~-d~~~~~~l~~~l~~~gI~i~~~~ 210 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE------RGLHPTLIHRSDKIN----------KLM-DADMNQPILDELDKREIPYRLNE 210 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh------CCCcEEEEecccccc----------hhc-CHHHHHHHHHHHHhcCCEEEECC
Confidence 4789999999999999999988 577999999987631 111 1233445666777889999874
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
++++++.. .+.++++..+.+|.|++|+|..|+..
T Consensus 211 ~v~~i~~~---------------~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 211 EIDAINGN---------------EVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eEEEEeCC---------------EEEECCCCEEEeCEEEECcCCCcChH
Confidence 78888531 35566677899999999999988654
No 162
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.22 E-value=4.4e-06 Score=88.81 Aligned_cols=38 Identities=32% Similarity=0.702 Sum_probs=32.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
....||+|||||+.|+++|++|++. .+|.+|+|+|++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~----~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQ----RPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHh----CCCCeEEEEeCCc
Confidence 4457999999999999999999983 1488999999875
No 163
>PRK07190 hypothetical protein; Provisional
Probab=98.22 E-value=5.2e-06 Score=88.60 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.++|+||||||+||.+|..|++ .|++|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar------~Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL------CGLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH------cCCCEEEEeCCCc
Confidence 4799999999999999999998 6889999999863
No 164
>PRK06185 hypothetical protein; Provisional
Probab=98.22 E-value=4.2e-05 Score=80.00 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+.+||+|||||++|+++|..|++ .|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~------~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLAR------AGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCc
Confidence 455899999999999999999998 6889999999864
No 165
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.21 E-value=1.3e-05 Score=85.27 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
....+||||||||..|+++|+.|++.. ++.+|+|||+.+.
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~----~~~~V~VlEk~~~ 81 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFT----NLKKIALIERRSD 81 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhC----CCCEEEEEecCcc
Confidence 345689999999999999999999842 3469999999864
No 166
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.20 E-value=1e-06 Score=96.20 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=34.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
....||||||+|.+|+++|..+++ .|.+|+|||+++...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~~iek~~~~g 48 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAW------HGLKVIVVEKDPVFG 48 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCC
Confidence 345899999999999999999998 688999999987543
No 167
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.20 E-value=1.6e-06 Score=79.23 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=34.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
-||+||||||+||+||++|++ .|.+|+|||++..+...
T Consensus 31 sDViIVGaGPsGLtAAyyLAk------~g~kV~i~E~~ls~GGG 68 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAK------AGLKVAIFERKLSFGGG 68 (262)
T ss_pred ccEEEECcCcchHHHHHHHHh------CCceEEEEEeecccCCc
Confidence 599999999999999999999 78999999999875443
No 168
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.20 E-value=7.6e-06 Score=87.13 Aligned_cols=100 Identities=23% Similarity=0.258 Sum_probs=73.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+++|..|++ .|.+|+||++.+.+. ... ..++...+.+.+++.+++++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l----------~~~-d~~~~~~l~~~l~~~gI~v~~~~ 237 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAA------LGVKVTLINTRDRLL----------SFL-DDEISDALSYHLRDSGVTIRHNE 237 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCcC----------CcC-CHHHHHHHHHHHHHcCCEEEECC
Confidence 4799999999999999999998 577999999987531 111 1233345566667789999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.++.+...... ..+.+.++..+.+|.|++|+|.+|+..
T Consensus 238 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 238 EVEKVEGGDDG-----------VIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEEEeCCe-----------EEEEECCCCEEEeCEEEEeecCCcccc
Confidence 78888643221 134556677899999999999988754
No 169
>PRK06116 glutathione reductase; Validated
Probab=98.19 E-value=8e-06 Score=86.66 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+++++++.+. ... ..++...+.+.+++.+++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l----------~~~-~~~~~~~l~~~L~~~GV~i~~~~ 229 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNG------LGSETHLFVRGDAPL----------RGF-DPDIRETLVEEMEKKGIRLHTNA 229 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCCc----------ccc-CHHHHHHHHHHHHHCCcEEECCC
Confidence 4799999999999999999988 577999999987531 111 1233345566677789999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
++.+++.+... ...+.+.+|..+.+|.||+|+|..|+...
T Consensus 230 ~V~~i~~~~~g----------~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 230 VPKAVEKNADG----------SLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EEEEEEEcCCc----------eEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 78888643210 01355667778999999999999887653
No 170
>PRK07233 hypothetical protein; Provisional
Probab=98.19 E-value=7.5e-06 Score=86.34 Aligned_cols=37 Identities=30% Similarity=0.535 Sum_probs=33.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
+|||||||.+||+||..|++ .|++|+|+|+++..+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~------~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK------RGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEEeCCCCCCc
Confidence 69999999999999999998 68899999999976554
No 171
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.19 E-value=9.9e-05 Score=71.67 Aligned_cols=180 Identities=12% Similarity=0.057 Sum_probs=104.6
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-------C-------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-------G------------------------------- 286 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-------~------------------------------- 286 (538)
-.|+|||+|++|+-+|..+++.+.+ |.++++...+... +
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~ 98 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVAD 98 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEee
Confidence 4899999999999999999887655 9999987543210 0
Q ss_pred ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccc-c--CCcceEEecc
Q 009310 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI-K--GLESQIFEAD 363 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~~g~~l~~D 363 (538)
..++...+.+...+.|++++.++.+.++..+++.. .+ .++.+.....+ . ..+...++++
T Consensus 99 ~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~--------~V----------~GVv~~~~~v~~~g~~~d~~~i~Ak 160 (254)
T TIGR00292 99 SAEFISTLASKALQAGAKIFNGTSVEDLITRDDTV--------GV----------AGVVINWSAIELAGLHVDPLTQRSR 160 (254)
T ss_pred HHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCC--------ce----------EEEEeCCccccccCCCCCCEEEEcC
Confidence 01223444556678899999999999987643200 00 23333211000 0 1135689999
Q ss_pred EEEEecCCCCC-CCCCCCCC-Cc--------cCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHH
Q 009310 364 LVLWTVGSKPL-LPHVEPPN-NR--------LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433 (538)
Q Consensus 364 ~vI~a~G~~p~-~~~l~~~~-~~--------~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~ 433 (538)
.||.|+|.... ..++.... .. ...+..+..-...|+.+-++ +|++|++|-.++..+ |.|...-..-
T Consensus 161 ~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~--~~~rmgp~fg 236 (254)
T TIGR00292 161 VVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVH--GLPRMGPIFG 236 (254)
T ss_pred EEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhc--CCCCcCchHH
Confidence 99999997543 11211100 00 00000011111233333333 899999999987533 3343333333
Q ss_pred H-HHHHHHHHHHHHHHH
Q 009310 434 A-FQQADFAGWNLWAAI 449 (538)
Q Consensus 434 A-~~qg~~aa~~i~~~l 449 (538)
+ .-.|+.+|..|...+
T Consensus 237 ~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 237 GMLLSGKHVAEQILEKL 253 (254)
T ss_pred HHHHhhHHHHHHHHHHh
Confidence 3 368999999888765
No 172
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.19 E-value=7.4e-06 Score=86.73 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=73.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..+++ .|.+|+++++.+.+. .+ . ..++...+.+.+++.+++++.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~~l---------~~-~-d~~~~~~l~~~l~~~gV~i~~~~ 228 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRG------LGVQVTLIYRGELIL---------RG-F-DDDMRALLARNMEGRGIRIHPQT 228 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHH------cCCeEEEEEeCCCCC---------cc-c-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 4789999999999999999988 577999999987631 11 1 1233344556677789999985
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.++.++..... ..+.+.++..+.+|.||+|+|..|+..
T Consensus 229 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 229 SLTSITKTDDG-----------LKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEEEEEEcCCe-----------EEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 78888643210 135555677899999999999988654
No 173
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.19 E-value=1.6e-05 Score=83.01 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+|+|||||+||+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~------~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA------RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCc
Confidence 789999999999999999998 7889999999865
No 174
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.19 E-value=4.9e-06 Score=86.25 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=30.6
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
||+|||||+||+++|..|++ .|++|+|||+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~------~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR------SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc------CCCEEEEEeCCCc
Confidence 69999999999999999998 7889999999864
No 175
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.17 E-value=5e-06 Score=86.19 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCC-CEEEEEcCCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~ 119 (538)
||+||||||||+++|..|++ .| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~------~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR------LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc------CCCceEEEEeCCCc
Confidence 69999999999999999998 78 89999999764
No 176
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.17 E-value=5.6e-06 Score=86.21 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=31.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
++++|+||||||||+++|..|++.. .+|++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~---~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS---HGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc---cCCCEEEEEeCC
Confidence 3479999999999999999999821 128999999994
No 177
>PRK06370 mercuric reductase; Validated
Probab=98.17 E-value=1.1e-05 Score=85.85 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=72.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++.+.+. . . ...++...+.+.++..+++++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~~l---------~-~-~~~~~~~~l~~~l~~~GV~i~~~~ 233 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRR------FGSEVTVIERGPRLL---------P-R-EDEDVAAAVREILEREGIDVRLNA 233 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCCCC---------c-c-cCHHHHHHHHHHHHhCCCEEEeCC
Confidence 4799999999999999999998 577999999987631 1 1 11233345566677889999975
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEc---CCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLL---ESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~---~~g~~~~yD~lVlAtG~~~~~p 206 (538)
++..++..... ..+.. .++..+.+|.||+|+|..|+..
T Consensus 234 ~V~~i~~~~~~-----------~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 234 ECIRVERDGDG-----------IAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 88888654321 01222 2345799999999999988754
No 178
>PRK05868 hypothetical protein; Validated
Probab=98.16 E-value=1.4e-05 Score=82.52 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=31.4
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
++|+|||||++|+++|..|++ .|++|+|||+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~------~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR------HGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCCC
Confidence 699999999999999999998 7889999999764
No 179
>PRK08013 oxidoreductase; Provisional
Probab=98.16 E-value=7.2e-06 Score=85.61 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+||+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~------~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG------SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh------CCCEEEEEeCCCC
Confidence 4799999999999999999998 7889999999764
No 180
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.15 E-value=9.6e-06 Score=85.92 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=73.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++.+... ... ..++...+.+.++..+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~il----------~~~-d~~~~~~~~~~l~~~gI~i~~~~ 228 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHG------LGSETHLVIRHERVL----------RSF-DSMISETITEEYEKEGINVHKLS 228 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCC----------ccc-CHHHHHHHHHHHHHcCCEEEcCC
Confidence 4799999999999999999998 577999999987621 111 1233445666677789999985
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCc-eEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~yD~lVlAtG~~~~~p 206 (538)
.++.+..+..- ...+.++++ ..+.+|.+++|+|..|+..
T Consensus 229 ~v~~i~~~~~~----------~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 229 KPVKVEKTVEG----------KLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEEEEEEeCCc----------eEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 78888543210 013555566 5799999999999988764
No 181
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.15 E-value=2.3e-05 Score=84.13 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=34.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
+||||||||++||+||..|++ .|++|+|+|+++..+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~------~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK------RGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCc
Confidence 689999999999999999999 78899999999875443
No 182
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.15 E-value=1e-05 Score=86.29 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=71.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+||++.+.+. .. . ..++...+.+.++..+++++.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~~-~-d~~~~~~~~~~l~~~gi~i~~~~ 245 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRR------LGAEVTILEALPAFL---------AA-A-DEQVAKEAAKAFTKQGLDIHLGV 245 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCccC---------Cc-C-CHHHHHHHHHHHHHcCcEEEeCc
Confidence 4799999999999999999988 577999999987531 11 1 1233344555666789999975
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCC--c--eEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLES--G--LIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~--g--~~~~yD~lVlAtG~~~~~p~ 207 (538)
+|+.++.+... ..+...+ + ..+.+|.|++|+|..|+...
T Consensus 246 ~v~~i~~~~~~-----------v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 246 KIGEIKTGGKG-----------VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 78888654321 0233222 2 47999999999999987653
No 183
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.15 E-value=7.8e-06 Score=92.27 Aligned_cols=100 Identities=18% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.+++||||||+.|+.+|..|++ .|.+|+|+++.+.+. ....+ ......+.+.++..+|+++.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~------~G~~Vtvv~~~~~ll---------~~~ld-~~~~~~l~~~l~~~GV~v~~~~ 203 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQN------LGMDVSVIHHAPGLM---------AKQLD-QTAGRLLQRELEQKGLTFLLEK 203 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEccCCchh---------hhhcC-HHHHHHHHHHHHHcCCEEEeCC
Confidence 4689999999999999999998 678999999876521 11111 122334556677789999986
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~ 205 (538)
.++.+..+... ..+.+.+|..+++|.+|+|+|.+|+.
T Consensus 204 ~v~~i~~~~~~-----------~~v~~~dG~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 204 DTVEIVGATKA-----------DRIRFKDGSSLEADLIVMAAGIRPND 240 (785)
T ss_pred ceEEEEcCCce-----------EEEEECCCCEEEcCEEEECCCCCcCc
Confidence 67777543321 24667788899999999999998764
No 184
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.15 E-value=2.2e-05 Score=85.42 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=33.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+...+|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ------QGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCCC
Confidence 466899999999999999999998 6889999999875
No 185
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.15 E-value=1e-05 Score=86.20 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=72.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++.+.+. .. . ..++...+.+.++..+++++.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~~-~-d~~~~~~l~~~l~~~gV~i~~~~ 228 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFAR------LGSEVTILQRSDRLL---------PR-E-EPEISAAVEEALAEEGIEVVTSA 228 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCcCC---------Cc-c-CHHHHHHHHHHHHHcCCEEEcCc
Confidence 4799999999999999999998 577999999987631 11 1 1223345566677789999986
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcC---CceEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
+|+.+..+... ..+.+. ++.++.+|.+|+|+|..|+...
T Consensus 229 ~V~~i~~~~~~-----------~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 229 QVKAVSVRGGG-----------KIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 68888654321 022221 3357999999999999887653
No 186
>PRK08244 hypothetical protein; Provisional
Probab=98.15 E-value=7.3e-06 Score=88.02 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL------AGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCC
Confidence 4799999999999999999998 788999999976
No 187
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.15 E-value=6.8e-06 Score=85.97 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=30.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
.+||+||||||+|+++|..|++ .|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~------~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE------SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh------CCCEEEEEcCC
Confidence 4799999999999999999998 78899999985
No 188
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.14 E-value=7.2e-05 Score=78.34 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=31.6
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+||+|||||..|+++|++|++ .|++|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~------~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ------RGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCC
Confidence 699999999999999999998 6889999999864
No 189
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.14 E-value=7.8e-06 Score=84.18 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=71.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC--CCC---------hhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--TGT---------PGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~--~~~---------~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
+|+|||||+.|+.+|..+.+.......|++|++.+.... .++ .++.....+.+++.||+++.+ .|+.|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999988654322335999998775321 111 112223455677889999876 78888
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l 378 (538)
+.+. +.|.+. +++++++|.+|+|+|.+|+.+..
T Consensus 80 d~~~-----------------------~~V~~~--------~g~~~~yD~LviAtG~~~~~~~i 112 (364)
T TIGR03169 80 DPDR-----------------------RKVLLA--------NRPPLSYDVLSLDVGSTTPLSGV 112 (364)
T ss_pred eccc-----------------------CEEEEC--------CCCcccccEEEEccCCCCCCCCC
Confidence 8754 445443 67789999999999999986544
No 190
>PRK07846 mycothione reductase; Reviewed
Probab=98.13 E-value=1.5e-05 Score=84.53 Aligned_cols=100 Identities=26% Similarity=0.322 Sum_probs=70.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++.+.+. ...+ .++...+.+++ ..+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~~~ll----------~~~d-~~~~~~l~~l~-~~~v~i~~~~ 227 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSA------LGVRVTVVNRSGRLL----------RHLD-DDISERFTELA-SKRWDVRLGR 227 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCccc----------cccC-HHHHHHHHHHH-hcCeEEEeCC
Confidence 4799999999999999999998 577999999987632 1111 22222333343 356888765
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
++++++.+... ..+.+.++..+++|.|++|+|..|+...
T Consensus 228 ~v~~i~~~~~~-----------v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 228 NVVGVSQDGSG-----------VTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEEEEEEcCCE-----------EEEEECCCcEeecCEEEEEECCccCccc
Confidence 78888644321 1355567778999999999999987654
No 191
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.13 E-value=1e-05 Score=82.41 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=82.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
..+||++|+|+.||.+|..|.. ..++||+|++++... .+ .-..++...+..++++.+++++.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~------~~~~VT~V~~e~~~~---------~~-lf~~~i~~~~~~y~e~kgVk~~~~t 276 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVS------KAKSVTVVFPEPWLL---------PR-LFGPSIGQFYEDYYENKGVKFYLGT 276 (478)
T ss_pred CceEEEECchHHHHHHHHHHHh------cCceEEEEccCccch---------hh-hhhHHHHHHHHHHHHhcCeEEEEec
Confidence 5789999999999999999987 688999999987621 11 222445567888999999999997
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ip 209 (538)
.+.+++....- + ...|.+.++.++++|.||+.+|++|+.....
T Consensus 277 ~~s~l~~~~~G----e-----v~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 277 VVSSLEGNSDG----E-----VSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred ceeecccCCCC----c-----EEEEEeccCCEeccCeEEEeecccccccccc
Confidence 55666544320 0 1258888999999999999999999877655
No 192
>PRK07045 putative monooxygenase; Reviewed
Probab=98.12 E-value=1e-05 Score=84.09 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
.+++|+||||||||+++|..|++ .|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~------~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA------RGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh------cCCcEEEEeCCCcc
Confidence 34799999999999999999999 78899999987743
No 193
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.12 E-value=1.4e-05 Score=85.09 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++++|||||+.|+.+|..|++ .|.+|++|++.+.+ .... ..++...+.+.+++.+++++.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~------~g~~Vtli~~~~~~----------l~~~-d~~~~~~l~~~L~~~gV~i~~~~ 239 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTE------LGVKVTLVSSRDRV----------LPGE-DADAAEVLEEVFARRGMTVLKRS 239 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCcC----------CCCC-CHHHHHHHHHHHHHCCcEEEcCC
Confidence 3689999999999999999988 57799999987762 1111 1223344566777889999975
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
+++.++.+... ..+.+.++..+.+|.|++|+|..|+...
T Consensus 240 ~v~~v~~~~~~-----------~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 240 RAESVERTGDG-----------VVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEEEEEeCCE-----------EEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 78888533210 1355566778999999999999887653
No 194
>PRK06753 hypothetical protein; Provisional
Probab=98.12 E-value=7.4e-06 Score=84.63 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+|+|||||+||+++|..|++ .|++|+|+|+++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~------~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE------QGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCc
Confidence 79999999999999999998 7889999999874
No 195
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.11 E-value=1e-05 Score=83.59 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=31.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+++||+|||||++|+++|++|++ +|++|+|||++.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~------~g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLAR------RGLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHH------CCCeEEEEeccc
Confidence 34799999999999999999999 688999999864
No 196
>PLN02507 glutathione reductase
Probab=98.11 E-value=1.4e-05 Score=85.55 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++.+.. +.. .+ .++...+.+.+++.+++++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~~~---------l~~-~d-~~~~~~l~~~l~~~GI~i~~~~ 265 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRG------MGATVDLFFRKELP---------LRG-FD-DEMRAVVARNLEGRGINLHPRT 265 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHH------cCCeEEEEEecCCc---------Ccc-cC-HHHHHHHHHHHHhCCCEEEeCC
Confidence 4789999999999999999988 56799999987652 111 11 233444556677789999986
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
+|+.+...... ..+.++++..+.+|.+++|+|..|+...
T Consensus 266 ~V~~i~~~~~~-----------~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 266 NLTQLTKTEGG-----------IKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEEEEEEeCCe-----------EEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 78888643210 1355567778999999999999887653
No 197
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.11 E-value=9.3e-06 Score=84.28 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=30.8
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+||+|||||++|+++|..|++ .|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~------~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK------QGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh------CCCcEEEEcCCC
Confidence 699999999999999999998 788999999864
No 198
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=1.5e-05 Score=84.92 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=71.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+++|..|++ .|.+|+|+|+.+... +. . ..++...+.+.+++.+++++.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~------~G~~Vtlv~~~~~~l---------~~-~-d~~~~~~l~~~l~~~gV~i~~~~ 234 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKN------YGVDVTIVEFLDRAL---------PN-E-DAEVSKEIAKQYKKLGVKILTGT 234 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHH------cCCeEEEEecCCCcC---------Cc-c-CHHHHHHHHHHHHHCCCEEEECC
Confidence 4799999999999999999998 577999999877521 11 1 1233345566677889999975
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEc--CCc--eEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLL--ESG--LIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~yD~lVlAtG~~~~~p 206 (538)
+|+.++.+... ..+.+ .++ ..+++|.||+|+|..|+..
T Consensus 235 ~v~~i~~~~~~-----------~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 235 KVESIDDNGSK-----------VTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEEEeCCe-----------EEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 78888654321 01222 244 4799999999999988754
No 199
>PRK07588 hypothetical protein; Provisional
Probab=98.07 E-value=2.6e-05 Score=81.15 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=31.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR------YGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH------CCCceEEEeCCCC
Confidence 389999999999999999998 7889999999764
No 200
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.07 E-value=1.5e-05 Score=83.35 Aligned_cols=101 Identities=22% Similarity=0.279 Sum_probs=76.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++++|||+|++|+.+|..|++ +|++|+++|+.++...+.+. ..+...+.+.++..+++++.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~------~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~~~~~ 199 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK------RGKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYGVELLLGT 199 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH------cCCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCCcEEEeCC
Confidence 4799999999999999999999 78999999999874322211 344456777788889999765
Q ss_pred eEEEEcCCCCcCcCCCceeecccE-EEcCCceEEEeeEEEEeCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDWLVLSLGAEPK 204 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~yD~lVlAtG~~~~ 204 (538)
.+..++...+... .. +...++..+++|.+++++|.+|+
T Consensus 200 ~~~~i~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 200 KVVGVEGKGNTLV---------VERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred ceEEEEcccCcce---------eeEEEEeCCcEEEeeEEEEeeccccc
Confidence 7888876654200 01 45667778999999999999885
No 201
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.07 E-value=5e-06 Score=63.07 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=28.4
Q ss_pred EECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 84 IIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
|||||++||++|..|++ .|++|+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~------~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK------AGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHH------TTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHH------CCCcEEEEecCcccC
Confidence 89999999999999999 688999999998743
No 202
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.06 E-value=1.2e-05 Score=83.27 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+||+|||||.+|+++|++|++ +|++|+|||+.+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~------~g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK------HGKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH------CCCeEEEEeccC
Confidence 489999999999999999998 688999999964
No 203
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.06 E-value=1.9e-05 Score=83.93 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=40.2
Q ss_pred CCCeeeCCCcccCCCCCEEEcccccc-ccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~-~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~ 448 (538)
.|.|.||...|+ ..|++||+|+|+. ..+..++.-......++..|+.+++++...
T Consensus 310 ~GGi~vd~~~~t-~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 310 IGGISVDTFYRT-GIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CCCEEECCCCcc-cCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 478999999998 8999999999974 222222222345567888899999998753
No 204
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.05 E-value=5.7e-05 Score=76.92 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=40.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhh
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~ 129 (538)
....+|+|||+|++||.+|..|.+ .|++|+|+|.++++..+......
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k------aG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK------AGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh------cCcEEEEEeccCCcCceeEEEec
Confidence 345899999999999999999998 78899999999998776654443
No 205
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.05 E-value=3.9e-05 Score=82.72 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=74.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC--CccC------------CCCChhhHHHHHHHHHhCCCEEEcCc
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE--TTIC------------PTGTPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~--~~~l------------~~~~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
..+|+|||||+.|+.+|..+++.+.+ |++++.. ..+. ....+++.+.+.+.+++.||+++.++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~ 288 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ 288 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence 46899999999999999999987666 8888631 1111 01234566777888889999999999
Q ss_pred eeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCC
Q 009310 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (538)
Q Consensus 310 ~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~ 375 (538)
+|.++..++ +.+.+.+. +++.+.+|.+|+|+|..|..
T Consensus 289 ~V~~I~~~~-----------------------~~~~v~~~------~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 289 RAKKIETED-----------------------GLIVVTLE------SGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEEEecC-----------------------CeEEEEEC------CCCEEEeCEEEECCCCCcCC
Confidence 999987643 33444432 56689999999999998764
No 206
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.05 E-value=2.5e-05 Score=82.75 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=70.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++++|||||+.|+.+|..|++ .|.+|++|++.+.+. ...+ .++...+.+++ ..+++++.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~~ll----------~~~d-~~~~~~l~~~~-~~gI~i~~~~ 230 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSA------LGTRVTIVNRSTKLL----------RHLD-EDISDRFTEIA-KKKWDIRLGR 230 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHh------CCCcEEEEEccCccc----------cccC-HHHHHHHHHHH-hcCCEEEeCC
Confidence 4799999999999999999988 577999999987631 1111 22223344444 346888864
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
+++.++.+... ..+.+.+++++.+|.|++|+|..|+...
T Consensus 231 ~V~~i~~~~~~-----------v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 231 NVTAVEQDGDG-----------VTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEEEEEEcCCe-----------EEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 78888644321 1355556778999999999999887643
No 207
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.05 E-value=1.8e-05 Score=74.12 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=62.6
Q ss_pred EEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC--------------CC----------C---C-------------
Q 009310 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC--------------PT----------G---T------------- 287 (538)
Q Consensus 248 vVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l--------------~~----------~---~------------- 287 (538)
+|||+|+.|+-+|..|.+.+.+. ++++++.+.+. +. + .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 69999999999999998876542 89999864331 00 0 0
Q ss_pred ---hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccE
Q 009310 288 ---PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364 (538)
Q Consensus 288 ---~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~ 364 (538)
+++.+++.+..++.++++.++++|+++..++ ++.++++. +++++.||.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-----------------------~~w~v~~~------~~~~~~a~~ 129 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG-----------------------DGWTVTTR------DGRTIRADR 129 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET-----------------------TTEEEEET------TS-EEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec-----------------------cEEEEEEE------ecceeeeee
Confidence 1233556677888999999999999999865 55666654 557899999
Q ss_pred EEEecCC--CCCCC
Q 009310 365 VLWTVGS--KPLLP 376 (538)
Q Consensus 365 vI~a~G~--~p~~~ 376 (538)
||+|+|. .|..+
T Consensus 130 VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 130 VVLATGHYSHPRIP 143 (203)
T ss_dssp EEE---SSCSB---
T ss_pred EEEeeeccCCCCcc
Confidence 9999997 45543
No 208
>PRK14694 putative mercuric reductase; Provisional
Probab=98.04 E-value=2.4e-05 Score=83.41 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+++++...+ . .. ..++...+.+.+++.+++++.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~------~g~~Vtlv~~~~~l----------~-~~-~~~~~~~l~~~l~~~GI~v~~~~ 239 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFAR------LGSRVTVLARSRVL----------S-QE-DPAVGEAIEAAFRREGIEVLKQT 239 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEECCCCC----------C-CC-CHHHHHHHHHHHHhCCCEEEeCC
Confidence 4789999999999999999998 57799999875321 1 11 1233445667777889999986
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.+..++.+... ..+.++++ .+.+|.||+|+|..|+..
T Consensus 240 ~v~~i~~~~~~-----------~~v~~~~~-~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 240 QASEVDYNGRE-----------FILETNAG-TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEEEEEEcCCE-----------EEEEECCC-EEEeCEEEEccCCCCCcC
Confidence 78888654331 12344444 699999999999998764
No 209
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.04 E-value=2.2e-05 Score=88.76 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=74.1
Q ss_pred CeEEEECCChhHHHHHHHHHHHHH-hcCcEEEEecCCccCCC---CC--------hhhHHHHHHHHHhCCCEEEcCceee
Q 009310 245 IRVAVVGCGYSGVELAATVSERLE-EKGIVQAINVETTICPT---GT--------PGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~-~~~~Vtlv~~~~~~l~~---~~--------~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
++|+|||+|+.|+.+|..|.+... ....|++++..+.+... ++ ..+.....+.+++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 589999999999999999987643 22349999988765311 11 1111112456788999999999999
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l 378 (538)
.|+.+. ..|++. +|+.+++|.+|+|||.+|..+.+
T Consensus 84 ~Id~~~-----------------------~~V~~~--------~G~~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 84 TINRQE-----------------------KVIHSS--------AGRTVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred EEeCCC-----------------------cEEEEC--------CCcEEECCEEEECCCCCcCCCCC
Confidence 998743 333332 67789999999999999875544
No 210
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.04 E-value=4.8e-05 Score=82.11 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=75.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC--Ccc--------CC----CCChhhHHHHHHHHHhCCCEEEcCc
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE--TTI--------CP----TGTPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~--~~~--------l~----~~~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
...|+|||||+.|+.+|.++++.+.+ +++++.. ..+ ++ ....++.+.+.+.+++.|++++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~ 287 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ 287 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence 45899999999999999999987765 7777642 111 01 1234667778888999999999999
Q ss_pred eeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCC
Q 009310 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (538)
Q Consensus 310 ~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~ 375 (538)
.|..+...+ +...+.+. +++.+.+|.||+|+|.+|..
T Consensus 288 ~V~~I~~~~-----------------------~~~~V~~~------~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 288 RASKLEPAA-----------------------GLIEVELA------NGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEEEEecC-----------------------CeEEEEEC------CCCEEEcCEEEECCCCCcCC
Confidence 999998743 23444332 56689999999999998764
No 211
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=76.19 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=30.8
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.+|+|||+|+||++||..|+. .|.+|+|+||+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~------aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE------AGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh------cCcEEEEEEcCC
Confidence 479999999999999999998 788999999987
No 212
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.03 E-value=2.7e-05 Score=83.04 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=73.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..+..+. ..|.+|+||++.+.. .... ..++...+.+.+++.+++++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~i----------l~~~-d~~~~~~l~~~L~~~GI~i~~~~ 252 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNMI----------LRGF-DSTLRKELTKQLRANGINIMTNE 252 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCcc----------cccc-CHHHHHHHHHHHHHcCCEEEcCC
Confidence 478999999999999998776531 247899999998763 1111 1334455666777889999885
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.++.+...... ...+.+.++..+.+|.+++|+|..|+..
T Consensus 253 ~v~~i~~~~~~----------~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 253 NPAKVTLNADG----------SKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEEEcCCc----------eEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 67887543210 0135555677899999999999988754
No 213
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.03 E-value=0.00018 Score=75.47 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=30.1
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+|+|||||.+|+++|.+|++ .|++|+|+|++.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~------~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ------AGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH------CCCEEEEEeCCC
Confidence 89999999999999999998 688999999975
No 214
>PRK06996 hypothetical protein; Provisional
Probab=98.03 E-value=1.7e-05 Score=82.75 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
++.++|+||||||+|+++|..|++.+. .+|.+|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~--~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSA--TRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC--cCCceEEEecCCC
Confidence 455899999999999999999998431 0246899999964
No 215
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.03 E-value=2.9e-05 Score=82.32 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=34.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
+...||||||||.+|+++|..|+++ .++.+|+|+|+.+...
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~----~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKEL----DPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhC----CCCCeEEEEEcCCCcc
Confidence 3447999999999999999999984 3688999999955433
No 216
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.03 E-value=2.3e-05 Score=81.57 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=32.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+.+|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~------~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL------AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh------cCCCEEEEEcCCc
Confidence 4799999999999999999998 7889999999863
No 217
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.02 E-value=1.5e-05 Score=83.62 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=30.0
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCC-CEEEEEcCCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~ 119 (538)
+|+|||||+|||++|..|++ .| ++|+|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~------~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK------HSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh------cCCCCEEEEecCCc
Confidence 79999999999999999998 56 59999999874
No 218
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=1.5e-05 Score=82.49 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=30.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
.||+|||||++|+++|..|++ .|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~------~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ------KGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc------CCCeEEEecCC
Confidence 689999999999999999998 78899999985
No 219
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.00015 Score=66.59 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=104.6
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC-------C------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------T------------------------------ 287 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~-------~------------------------------ 287 (538)
..|+|||+|++|+-.|.+|++.+-+ |.++++.-.+.... +
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d 107 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD 107 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCce---EEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence 4899999999999999999987655 99999864443211 1
Q ss_pred -hhhHHHHHHHHHhCCCEEEcCceeeEEecccc-ccccccCCCCCcccccccccCCCceEEeecccc---cCCcceEEec
Q 009310 288 -PGNREAALKVLSARKVQLVLGYFVRCIRRVGE-FEASVKQPESGAIPNIAADKNSDKYILELQPAI---KGLESQIFEA 362 (538)
Q Consensus 288 -~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~g~~l~~ 362 (538)
.+....+....-+.|.++.....|+.+.-.++ .. .++.+...+.. ..-|.-.+++
T Consensus 108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rV--------------------aGvVvNWt~V~~~~lhvDPl~i~a 167 (262)
T COG1635 108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRV--------------------AGVVVNWTPVQMAGLHVDPLTIRA 167 (262)
T ss_pred HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCce--------------------EEEEEecchhhhcccccCcceeeE
Confidence 11122223334456888988888888755432 11 34444332211 1115567899
Q ss_pred cEEEEecCCCCCC-CCCCCCCCccCCCCcCCC--------CCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHH
Q 009310 363 DLVLWTVGSKPLL-PHVEPPNNRLHDLPLNAR--------GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433 (538)
Q Consensus 363 D~vI~a~G~~p~~-~~l~~~~~~~~~~~l~~~--------G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~ 433 (538)
+.||-+||..... .++..-.. ..+..+... -.+.|+.+.++ +||+|++|-+++.-+ |-+....+.-
T Consensus 168 ~~VvDaTGHda~v~~~~~kr~~-~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~--G~pRMGPiFG 242 (262)
T COG1635 168 KAVVDATGHDAEVVSFLAKRIP-ELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVH--GLPRMGPIFG 242 (262)
T ss_pred EEEEeCCCCchHHHHHHHHhcc-ccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhc--CCcccCchhh
Confidence 9999999997551 11110000 001111111 12445555554 899999999886533 3333222333
Q ss_pred -HHHHHHHHHHHHHHHHC
Q 009310 434 -AFQQADFAGWNLWAAIN 450 (538)
Q Consensus 434 -A~~qg~~aa~~i~~~l~ 450 (538)
=.-.|+.+|+.|...+.
T Consensus 243 gMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 243 GMLLSGKKAAEEILEKLK 260 (262)
T ss_pred hhhhchHHHHHHHHHHhh
Confidence 34788999988887764
No 220
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.01 E-value=4e-05 Score=81.60 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=71.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||||+.|+.+|..+++ .|.+|+|||+.++.. .+ .+ .++...+.+.+++.+++++.+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~------~G~~Vtlie~~~~il---------~~-~d-~~~~~~l~~~l~~~gV~i~~~ 235 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRR------LGAQVTVVEYLDRIC---------PG-TD-TETAKTLQKALTKQGMKFKLG 235 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCCCC---------CC-CC-HHHHHHHHHHHHhcCCEEEEC
Confidence 35899999999999999999988 577999999977631 11 11 223344566677789999976
Q ss_pred -eEEEEcCCCCcCcCCCceeecccEEEc-----CCceEEEeeEEEEeCCCCCCCC
Q 009310 158 -RVKLLCPSDHLGVNGPMACTHGGTVLL-----ESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~-----~~g~~~~yD~lVlAtG~~~~~p 206 (538)
+++.+..+... + .+.. .++..+++|.|++|+|..|+..
T Consensus 236 ~~V~~i~~~~~~------v-----~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 236 SKVTGATAGADG------V-----SLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred cEEEEEEEcCCe------E-----EEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 78888643211 0 1221 1235799999999999988654
No 221
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=3.3e-05 Score=81.73 Aligned_cols=99 Identities=22% Similarity=0.352 Sum_probs=71.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++++.+. .. . ..++...+.+.+++.+++++.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~~-~-~~~~~~~l~~~l~~~gV~v~~~~ 220 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFAN------FGSKVTILEAASLFL---------PR-E-DRDIADNIATILRDQGVDIILNA 220 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCC---------CC-c-CHHHHHHHHHHHHhCCCEEEeCC
Confidence 4689999999999999999998 578999999977531 11 1 1233345566777889999975
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.+++++.+... ..+..+++ ++.+|.+++|+|..|+..
T Consensus 221 ~v~~i~~~~~~-----------v~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 221 HVERISHHENQ-----------VQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEEEcCCE-----------EEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 78888644321 12444444 589999999999988754
No 222
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.00 E-value=2.9e-05 Score=81.62 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=71.5
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC--CCC---------hhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--TGT---------PGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~--~~~---------~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
+.++|||||||..|+.+|..|.. ....|++|++.+.+.. .++ ......+.+.++..+++++.+ +|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~---~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V 84 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDP---KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VV 84 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCc---CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EE
Confidence 35799999999999999887742 1224999998776432 110 112223445566778988764 78
Q ss_pred eEEeccccccccccCCCCCcccccccccCCCceEEeecccc--cCCcceEEeccEEEEecCCCCCCCCC
Q 009310 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI--KGLESQIFEADLVLWTVGSKPLLPHV 378 (538)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~g~~l~~D~vI~a~G~~p~~~~l 378 (538)
+.|+.+. +.|++...... ...++.++++|.+|+|+|.+|+.+-+
T Consensus 85 ~~Id~~~-----------------------~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~i 130 (424)
T PTZ00318 85 YDVDFEE-----------------------KRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNI 130 (424)
T ss_pred EEEEcCC-----------------------CEEEEecccccccccCCceEecCCEEEECCCcccCCCCC
Confidence 8998755 45555221000 01256789999999999999875433
No 223
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.00 E-value=4.3e-06 Score=76.98 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=30.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
..+||+||||||+||+||++|++ .|++|++||++...+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~------~g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK------AGLKVAVIERKLSPG 53 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH------HTS-EEEEESSSS-B
T ss_pred ccCCEEEECCChhHHHHHHHHHH------CCCeEEEEecCCCCC
Confidence 34799999999999999999999 688999999987644
No 224
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.00 E-value=3.8e-05 Score=83.39 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~------~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ------YGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCC
Confidence 456899999999999999999998 6889999999863
No 225
>PRK11445 putative oxidoreductase; Provisional
Probab=97.99 E-value=2.5e-05 Score=80.04 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+||+||||||||+++|..|++ . ++|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~------~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG------K-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc------c-CCEEEEECCCc
Confidence 799999999999999999988 5 79999998763
No 226
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.98 E-value=2.3e-05 Score=80.65 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.4
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+||+|||||.+|+++|++|++ .|++|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~------~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR------RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 489999999999999999998 688999999865
No 227
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.97 E-value=0.00015 Score=77.27 Aligned_cols=36 Identities=14% Similarity=0.331 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.||||||||.+|+++|+.|++. .+|.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~----~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLREL----EPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHh----CCCCeEEEEEcCCc
Confidence 4899999999999999999983 26889999999764
No 228
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.96 E-value=4.8e-05 Score=78.33 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=30.3
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
||+|||||+||+++|..|++. .+|++|+|+|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCC
Confidence 699999999999999999873 2589999999987
No 229
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.96 E-value=2.7e-05 Score=80.92 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.++|+|||||++|+++|..|++ .|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH------CCCCEEEEECCCC
Confidence 4799999999999999999998 7899999999773
No 230
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.96 E-value=3.2e-05 Score=80.18 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=33.6
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (538)
++|+|||||.+||+||++|++.+ +..+|+|+|++++.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~----p~~~i~lfE~~~r~GG 39 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAG----PDVEVTLFEADDRVGG 39 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC----CCCcEEEEecCCCCCc
Confidence 47999999999999999999943 4589999999987543
No 231
>PRK06126 hypothetical protein; Provisional
Probab=97.95 E-value=3.5e-05 Score=83.83 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=32.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...++|+||||||+||++|..|++ .|++|+|||+.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~------~G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR------RGVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 345899999999999999999999 789999999976
No 232
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.95 E-value=7.6e-06 Score=86.05 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=28.7
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (538)
||||||||+||++||..+++ .|.+|+|||+.+.++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr------~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR------AGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH------TTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHH------CCCEEEEEECCccCCC
Confidence 79999999999999999999 6889999999986543
No 233
>PTZ00058 glutathione reductase; Provisional
Probab=97.95 E-value=4.2e-05 Score=82.70 Aligned_cols=101 Identities=14% Similarity=0.265 Sum_probs=71.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+++|..|++ .|.+|+|+++.+.+. ...+ .++...+.+.+++.+++++.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~------~G~~Vtli~~~~~il----------~~~d-~~i~~~l~~~L~~~GV~i~~~~ 299 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNR------LGAESYIFARGNRLL----------RKFD-ETIINELENDMKKNNINIITHA 299 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------cCCcEEEEEeccccc----------ccCC-HHHHHHHHHHHHHCCCEEEeCC
Confidence 5799999999999999999988 567999999987521 1111 233445566677789999885
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEc-CCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~-~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.+.+++..... . ..+.. +++..+.+|.|++|+|..|+..
T Consensus 300 ~V~~I~~~~~~-----~-----v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 300 NVEEIEKVKEK-----N-----LTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEEEecCCC-----c-----EEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 67778643210 0 02222 3345799999999999887654
No 234
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.95 E-value=3.2e-05 Score=79.10 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=74.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-C----------ChhhHHHHHHHHHhCC-CEEEcCcee
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-G----------TPGNREAALKVLSARK-VQLVLGYFV 311 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-~----------~~~~~~~~~~~l~~~g-V~v~~~~~V 311 (538)
.++|||||||..|+.++..|.... ....|++|++.+..+-. + ..++...+.+.+++.+ |+++.+ +|
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V 80 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EV 80 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EE
Confidence 479999999999999999998765 22339999998764321 1 1233344566777555 888876 68
Q ss_pred eEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCC
Q 009310 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376 (538)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~ 376 (538)
++|+.+. +.|++. ++..+++|.+|+++|.++++.
T Consensus 81 ~~ID~~~-----------------------k~V~~~--------~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 81 TDIDRDA-----------------------KKVTLA--------DLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEEcccC-----------------------CEEEeC--------CCccccccEEEEecCCcCCcC
Confidence 8898865 567665 567899999999999999853
No 235
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.94 E-value=4.7e-05 Score=81.65 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|++++.. + ... ..++...+.+.+++.+++++.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~~~----------l-~~~-d~~~~~~l~~~l~~~GV~i~~~~ 243 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNE------LGFDVTVAVRSIP----------L-RGF-DRQCSEKVVEYMKEQGTLFLEGV 243 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCcc----------c-ccC-CHHHHHHHHHHHHHcCCEEEcCC
Confidence 4689999999999999999998 5779999986421 1 111 1223345666777889999876
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
.+..+...... ..+.+.+++.+.+|.|++|+|..|+...
T Consensus 244 ~v~~v~~~~~~-----------~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 244 VPINIEKMDDK-----------IKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred eEEEEEEcCCe-----------EEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 56666432210 1355566778999999999999887553
No 236
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=4.5e-05 Score=81.20 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||||+.|+.+|..|++ .|.+|+++++.+.+. ... ..++...+.+.+++. ++++.+
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l----------~~~-d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSR------LGVKVTVFERGDRIL----------PLE-DPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCcC----------cch-hHHHHHHHHHHHhhc-cEEEcC
Confidence 34799999999999999999998 577999999987631 111 123334455566666 888864
Q ss_pred -eEEEEcCCCCcCcCCCceeecccEEEc--CCceEEEeeEEEEeCCCCCCCCC
Q 009310 158 -RVKLLCPSDHLGVNGPMACTHGGTVLL--ESGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~--~~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
.+..++..... .+ .+.. .++..+.+|.+++|+|..|+...
T Consensus 230 ~~v~~i~~~~~~-----~v-----~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 230 AKVTSVEKSGDE-----KV-----EELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred CEEEEEEEcCCc-----eE-----EEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 78787543220 00 1212 23357999999999999887653
No 237
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.93 E-value=0.0001 Score=77.96 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=73.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC---------------------------------------
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--------------------------------------- 284 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~--------------------------------------- 284 (538)
.++|+|||+|++|+-+|..+.+.+.+ ++++++.+.+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m 86 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM 86 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence 57999999999999999999887654 888886432210
Q ss_pred ---CCC------------------hhhHHHHHHHHHhCCCE--EEcCceeeEEeccccccccccCCCCCcccccccccCC
Q 009310 285 ---TGT------------------PGNREAALKVLSARKVQ--LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341 (538)
Q Consensus 285 ---~~~------------------~~~~~~~~~~l~~~gV~--v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (538)
+++ .++.+++++..+..|++ +.+++.|++++..+
T Consensus 87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~----------------------- 143 (461)
T PLN02172 87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD----------------------- 143 (461)
T ss_pred cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-----------------------
Confidence 000 23455666677788988 89999999998744
Q ss_pred CceEEeecccccCCcceEEeccEEEEecC--CCCCCCCCC
Q 009310 342 DKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVE 379 (538)
Q Consensus 342 ~~v~~~~~~~~~~~~g~~l~~D~vI~a~G--~~p~~~~l~ 379 (538)
+..++.... .++...+..+|.||+|+| .+|+.+-++
T Consensus 144 ~~w~V~~~~--~~~~~~~~~~d~VIvAtG~~~~P~~P~ip 181 (461)
T PLN02172 144 GKWRVQSKN--SGGFSKDEIFDAVVVCNGHYTEPNVAHIP 181 (461)
T ss_pred CeEEEEEEc--CCCceEEEEcCEEEEeccCCCCCcCCCCC
Confidence 445554331 111123567999999999 467755443
No 238
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.93 E-value=4e-05 Score=79.48 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=32.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.++++|||||||.+|+++|++|++ .|.+|+++|++.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~------~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE------RGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH------cCCEEEEEecCc
Confidence 356899999999999999999999 677999999876
No 239
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.92 E-value=0.00038 Score=70.77 Aligned_cols=73 Identities=16% Similarity=0.032 Sum_probs=56.9
Q ss_pred cCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcc
Q 009310 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357 (538)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g 357 (538)
+.+++..+..+.+.+.+.+.+++.|+++++++.|.++.-.+... ..|.++ +|
T Consensus 163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~--------------------~~v~~~--------~g 214 (486)
T COG2509 163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEV--------------------LGVKLT--------KG 214 (486)
T ss_pred cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCce--------------------EEEEcc--------CC
Confidence 34566667778888999999999999999999999998755211 233332 88
Q ss_pred eEEeccEEEEecCCCCCCCCCC
Q 009310 358 QIFEADLVLWTVGSKPLLPHVE 379 (538)
Q Consensus 358 ~~l~~D~vI~a~G~~p~~~~l~ 379 (538)
.++++|.||+|+|.... +|+.
T Consensus 215 ~~i~~~~vvlA~Grsg~-dw~~ 235 (486)
T COG2509 215 EEIEADYVVLAPGRSGR-DWFE 235 (486)
T ss_pred cEEecCEEEEccCcchH-HHHH
Confidence 89999999999999877 4544
No 240
>PLN02612 phytoene desaturase
Probab=97.92 E-value=0.0005 Score=74.93 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=36.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
....++|+|||||.+||+||.+|.+ .|++|+|+|++++....
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~------~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLAD------AGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCCCCCc
Confidence 3445899999999999999999998 68899999998875544
No 241
>PLN02985 squalene monooxygenase
Probab=97.91 E-value=6.4e-05 Score=80.73 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=32.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...+||+|||||++|+++|..|++ .|++|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~------~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK------DGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH------cCCeEEEEECcC
Confidence 455799999999999999999998 788999999974
No 242
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.89 E-value=0.0004 Score=67.98 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=35.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~ 125 (538)
.+.+|.|||+|.+||+||..|.+ .++|||+|.+.+.+.+..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-------rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-------RHDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-------ccceEEEeccccccCccc
Confidence 44799999999999999999986 479999999998766544
No 243
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=6.1e-05 Score=80.29 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=67.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|.+ .|.+|+||++.+++. . ..+ .++...+.+.++.. ++++.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~------~G~~Vtlv~~~~~il---------~-~~d-~~~~~~~~~~l~~~-v~i~~~~ 235 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHR------LGSEVDVVEMFDQVI---------P-AAD-KDIVKVFTKRIKKQ-FNIMLET 235 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCCEEEEecCCCCC---------C-cCC-HHHHHHHHHHHhhc-eEEEcCC
Confidence 4799999999999999999988 577999999987631 1 111 22333444555555 777764
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCC----ceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLES----GLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~----g~~~~yD~lVlAtG~~~~~p 206 (538)
.++.+...... ..+.+.+ ...+++|.||+|+|..|+..
T Consensus 236 ~v~~i~~~~~~-----------~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 236 KVTAVEAKEDG-----------IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 77777533210 0233222 24699999999999988765
No 244
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.87 E-value=4.2e-05 Score=85.10 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=30.8
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.+|+|||||.+|+++|++|++ +|++|+|+|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~------~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR------RGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH------CCCeEEEEecCC
Confidence 699999999999999999998 788999999974
No 245
>PLN02529 lysine-specific histone demethylase 1
Probab=97.87 E-value=9.2e-06 Score=89.62 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHhhhcccccccccccccccCcCCCCCCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 47 FAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
.+.|.+||..+.. .++....++|+|||||+|||+||..|++ .|++|+|+|++++.+.+
T Consensus 141 ~inc~vnp~~~~~-------------~~~~~~~~~v~viGaG~aGl~aA~~l~~------~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 141 YINFGVSPSFASP-------------IPEEGTEGSVIIVGAGLAGLAAARQLLS------FGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CcceeecccccCC-------------CCcccCCCCEEEECcCHHHHHHHHHHHH------cCCcEEEEecCccCcCc
Confidence 3578888876551 1233456899999999999999999998 78999999999875544
No 246
>PRK13748 putative mercuric reductase; Provisional
Probab=97.87 E-value=6.7e-05 Score=81.97 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=70.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+||++...+ .. . ..++...+.+.++..+++++.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~~~l----------~~-~-d~~~~~~l~~~l~~~gI~i~~~~ 331 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFAR------LGSKVTILARSTLF----------FR-E-DPAIGEAVTAAFRAEGIEVLEHT 331 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCEEEEEecCccc----------cc-c-CHHHHHHHHHHHHHCCCEEEcCC
Confidence 4789999999999999999998 56799999985321 11 1 1233345666777889999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.++.+..+... ..+.++++ .+.+|.+++|+|..|+..
T Consensus 332 ~v~~i~~~~~~-----------~~v~~~~~-~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 332 QASQVAHVDGE-----------FVLTTGHG-ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EEEEEEecCCE-----------EEEEecCC-eEEeCEEEEccCCCcCCC
Confidence 77777543221 12444444 699999999999998764
No 247
>PRK06847 hypothetical protein; Provisional
Probab=97.87 E-value=0.00015 Score=74.93 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=71.1
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC---------------------------------------
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--------------------------------------- 284 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~--------------------------------------- 284 (538)
.++|+|||||+.|+-+|..|++.+.+ |+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 46899999999999999999887655 777776432100
Q ss_pred ------CC-----------------ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCC
Q 009310 285 ------TG-----------------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341 (538)
Q Consensus 285 ------~~-----------------~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (538)
.+ .+.+.+.+.+.+++.|++++.++.|++++.++
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~----------------------- 137 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD----------------------- 137 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-----------------------
Confidence 00 01233445566677899999999999987654
Q ss_pred CceEEeecccccCCcceEEeccEEEEecCCCCC
Q 009310 342 DKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (538)
Q Consensus 342 ~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~ 374 (538)
+.+.+.+. +|+++.+|.||.|.|..+.
T Consensus 138 ~~~~v~~~------~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 138 DGVTVTFS------DGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred CEEEEEEc------CCCEEEcCEEEECcCCCcc
Confidence 44555433 6678999999999998765
No 248
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.85 E-value=0.00015 Score=77.92 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=42.0
Q ss_pred CCCCCeeeCCCcccC-----CCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 391 NARGQAETDETLCVK-----GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 391 ~~~G~i~vd~~l~~~-----~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
.-.|.+.+|+..|+. -.|++||+|.++.........-......++-.|+.++++++...+
T Consensus 440 ~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 440 YTMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred ecccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 345788899888863 369999999997643321111134566788999999999987643
No 249
>PRK14727 putative mercuric reductase; Provisional
Probab=97.84 E-value=8e-05 Score=79.62 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=69.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+.+|..|++ .|.+|+|+++...+ .. .+ .++...+.+.+++.+++++.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~------~G~~Vtlv~~~~~l----------~~-~d-~~~~~~l~~~L~~~GV~i~~~~ 249 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYAR------LGSRVTILARSTLL----------FR-ED-PLLGETLTACFEKEGIEVLNNT 249 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCEEEEEEcCCCC----------Cc-ch-HHHHHHHHHHHHhCCCEEEcCc
Confidence 4789999999999999999988 56799999875321 11 11 223345566677789999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
+++.+..+... ..+..+++ .+.+|.+|+|+|..|+..
T Consensus 250 ~V~~i~~~~~~-----------~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 250 QASLVEHDDNG-----------FVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEEEEEeCCE-----------EEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 78777543221 13444454 689999999999998765
No 250
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=1.7e-05 Score=84.00 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=38.6
Q ss_pred CCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc
Q 009310 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (538)
Q Consensus 75 ~~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~ 125 (538)
....+++|+|||||.|||+||++|.+ .|++|+|+|.+++.+++..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~------~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD------FGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH------cCCceEEEeccCCcCceeE
Confidence 34566899999999999999999998 6789999999998766543
No 251
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.83 E-value=3.3e-05 Score=81.63 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
||||||||+||..+|..|++.+. ..++|+|||+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~---~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP---DALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT---CSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCC---CCcEEEEEecCC
Confidence 79999999999999999999652 228999999987
No 252
>PLN02661 Putative thiazole synthesis
Probab=97.83 E-value=0.00042 Score=69.60 Aligned_cols=180 Identities=18% Similarity=0.147 Sum_probs=99.3
Q ss_pred CeEEEECCChhHHHHHHHHHHH-HHhcCcEEEEecCCccCCC---------------------------CCh--------
Q 009310 245 IRVAVVGCGYSGVELAATVSER-LEEKGIVQAINVETTICPT---------------------------GTP-------- 288 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~-~~~~~~Vtlv~~~~~~l~~---------------------------~~~-------- 288 (538)
-.|+|||+|+.|+-+|..+++. +.+ |+++++...+... ++.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ 169 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIK 169 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEec
Confidence 4899999999999999999853 223 9999886543210 000
Q ss_pred ---hhHHHHH-HHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeeccc-ccC-----Ccce
Q 009310 289 ---GNREAAL-KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA-IKG-----LESQ 358 (538)
Q Consensus 289 ---~~~~~~~-~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-----~~g~ 358 (538)
.....+. +.+++.||+++.++.+.++..+++.. .++.+..... ..+ .+..
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grV--------------------aGVVvnw~~v~~~~~~~s~~dp~ 229 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRV--------------------GGVVTNWALVAQNHDTQSCMDPN 229 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEE--------------------EEEEeecchhhhccCCCCcccee
Confidence 0001122 23344678888888887776543211 3444321100 011 1234
Q ss_pred EEeccEEEEecCCCCCCC-----CCCCCCCc-----cCCCCcCCCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCC
Q 009310 359 IFEADLVLWTVGSKPLLP-----HVEPPNNR-----LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428 (538)
Q Consensus 359 ~l~~D~vI~a~G~~p~~~-----~l~~~~~~-----~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~ 428 (538)
.+.++.||+|||..+..- .+...+.. ...+..+..-...|+.+-++ +|++|++|-.++..+ |.+..
T Consensus 230 ~I~AkaVVlATGh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~--g~~rm 305 (357)
T PLN02661 230 VMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEID--GSPRM 305 (357)
T ss_pred EEECCEEEEcCCCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhc--CCCcc
Confidence 789999999999664310 11100000 00001111111233333333 899999999887533 34443
Q ss_pred ccHHHH-HHHHHHHHHHHHHHHCC
Q 009310 429 ATAQVA-FQQADFAGWNLWAAIND 451 (538)
Q Consensus 429 ~~~~~A-~~qg~~aa~~i~~~l~~ 451 (538)
.-..-+ .-.|+.+|..|+..+..
T Consensus 306 gp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 306 GPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred CchhHhHHhhhHHHHHHHHHHHcc
Confidence 333334 47899999999998864
No 253
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.82 E-value=1.9e-05 Score=73.83 Aligned_cols=149 Identities=19% Similarity=0.216 Sum_probs=100.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---CChh-----------hH--H--HHHHHHHhCCCEEEc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---GTPG-----------NR--E--AALKVLSARKVQLVL 307 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---~~~~-----------~~--~--~~~~~l~~~gV~v~~ 307 (538)
+|+|||||+.|+.+|..|++.+.+ +++++..+..... .... .. + .+.+.++..+++++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRL 77 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccccccccccccccccccccccceEEEee
Confidence 589999999999999999855444 9999765532110 0000 00 1 333445778999999
Q ss_pred CceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCCC------
Q 009310 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP------ 381 (538)
Q Consensus 308 ~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~~------ 381 (538)
+..+.+++...... . ...+.+... ..+++.++.+|.+|+|+|..|+.+.++..
T Consensus 78 ~~~v~~i~~~~~~~--------~----------~~~~~~~~~---~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~ 136 (201)
T PF07992_consen 78 NAKVVSIDPESKRV--------V----------CPAVTIQVV---ETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFL 136 (201)
T ss_dssp HHTEEEEEESTTEE--------E----------ETCEEEEEE---ETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBT
T ss_pred cccccccccccccc--------c----------cCcccceee---ccCCceEecCCeeeecCccccceeecCCCcccccc
Confidence 99999998754200 0 011122110 12377899999999999998774433321
Q ss_pred -------------------------CC-ccCCCCcCCCCCeeeCCCcccCCCCCEEEccccccc
Q 009310 382 -------------------------NN-RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419 (538)
Q Consensus 382 -------------------------~~-~~~~~~l~~~G~i~vd~~l~~~~~~~VfaiGD~~~~ 419 (538)
.+ ...+++++++|++.||+++|+ +.|+||++|||+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 137 RGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGI 199 (201)
T ss_dssp TSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 00 234677889999999999999 79999999999986
No 254
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.82 E-value=9.3e-05 Score=79.04 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=67.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++++|||||+.|+.+|..|++ .|.+|+|+++... +. .. ..++...+.+.++..+++++.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~~~----------l~-~~-d~~~~~~l~~~L~~~gV~i~~~~ 241 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAG------IGLDVTVMVRSIL----------LR-GF-DQDCANKVGEHMEEHGVKFKRQF 241 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------hCCcEEEEEeccc----------cc-cc-CHHHHHHHHHHHHHcCCEEEeCc
Confidence 4689999999999999999998 5779999987421 11 11 1233345556677789999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCc---eEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG---LIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g---~~~~yD~lVlAtG~~~~~p 206 (538)
.++.+...... ..+...++ .++.+|.+++|+|..|+..
T Consensus 242 ~v~~v~~~~~~-----------~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 242 VPIKVEQIEAK-----------VKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred eEEEEEEcCCe-----------EEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 56666432210 12433333 4799999999999888754
No 255
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.81 E-value=8.7e-05 Score=81.48 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHH-hccCCcEEEEe
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADL-LANTGVQFFKD 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~-~~~~~v~~~~~ 157 (538)
.++|+|||||+.|++.|..|.+ .|.+|+|||+.+++. . ..+ .++...+.+. ++..+|+++.+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~------~G~eVTLIe~~~~ll---------~-~~d-~eis~~l~~~ll~~~GV~I~~~ 374 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTA------LGSEVVSFEYSPQLL---------P-LLD-ADVAKYFERVFLKSKPVRVHLN 374 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHh------CCCeEEEEeccCccc---------c-cCC-HHHHHHHHHHHhhcCCcEEEcC
Confidence 4689999999999999999988 567999999987631 1 111 2222333333 34678999875
Q ss_pred -eEEEEcCCCCcCcCCCceeecccEEEcC---------------CceEEEeeEEEEeCCCCCCCCC
Q 009310 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLE---------------SGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~---------------~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
.|+.+...... ..+ .+.+. +.+.+.+|.|++|+|..|+...
T Consensus 375 ~~V~~I~~~~~~----~~v-----~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 375 TLIEYVRAGKGN----QPV-----IIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred CEEEEEEecCCc----eEE-----EEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 78888643210 000 12111 1137999999999999887543
No 256
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.78 E-value=0.00011 Score=83.15 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------CChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||||+.|+.+|..|++.+.+ |+++++.+.+... .+.+......+.+++.||++++++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V 612 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP 612 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee
Confidence 468999999999999999999988765 9999987654222 13334444556788899999999876
No 257
>PRK07236 hypothetical protein; Provisional
Probab=97.78 E-value=0.00016 Score=75.16 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=31.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
..+|+|||||++|+.+|..|++.+.+ |+++++.+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~ 41 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTE 41 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCC
Confidence 46899999999999999999987665 9999987644
No 258
>PLN02546 glutathione reductase
Probab=97.77 E-value=0.00013 Score=79.06 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe-
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (538)
.++|+|||||+.|+..|..|.+ .+.+|+|+++.+... ... ..++...+.+.++..+|+++.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~------~g~~Vtlv~~~~~il----------~~~-d~~~~~~l~~~L~~~GV~i~~~~ 314 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNG------LKSDVHVFIRQKKVL----------RGF-DEEVRDFVAEQMSLRGIEFHTEE 314 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEEeccccc----------ccc-CHHHHHHHHHHHHHCCcEEEeCC
Confidence 4799999999999999999987 567999999876521 111 1233334556677789999875
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.+..+.....- . ..+..+++....+|.+++|+|..|+..
T Consensus 315 ~v~~i~~~~~g-----~-----v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 315 SPQAIIKSADG-----S-----LSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEEEEEcCCC-----E-----EEEEECCeEEEecCEEEEeeccccCCC
Confidence 67777532110 0 023444554456899999999988754
No 259
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.76 E-value=9.3e-05 Score=72.10 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=32.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.+..+|+|||||.-|+++|++|++ +|.++.++|+-+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK------~g~killLeqf~ 40 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAK------RGDKILLLEQFP 40 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHh------cCCeEEEEeccC
Confidence 355799999999999999999999 678999999976
No 260
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.76 E-value=8e-05 Score=85.19 Aligned_cols=93 Identities=16% Similarity=0.077 Sum_probs=69.1
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------CChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 242 ~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
..+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+... ++.++.+...+.+++.||+|++|+.+-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 3479999999999999999999988776 9999987654321 234455666678889999999987542
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCC-CC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK-PL 374 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~-p~ 374 (538)
..++++ +.....+|.||+|+|.. |.
T Consensus 381 -----------------------------~dit~~--------~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 -----------------------------KTATLE--------DLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -----------------------------cEEeHH--------HhccccCCEEEEeCCCCCCC
Confidence 122222 33445799999999995 55
No 261
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.75 E-value=7.1e-05 Score=79.56 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=52.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------CC--CChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+++|..|++.+.+ |+++++.+.+. +. .+.++.....+.+++.||++++++.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 368999999999999999999887655 99999877652 21 24456666778888999999999865
No 262
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.73 E-value=0.00014 Score=76.21 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=31.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCC-CEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~ 118 (538)
...+||+|||||..|+++|++|++. .| .+|+|||++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~-----~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKE-----HGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHh-----cCCCeEEEEEccc
Confidence 3458999999999999999999982 26 3899999974
No 263
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.73 E-value=0.00084 Score=70.74 Aligned_cols=36 Identities=33% Similarity=0.583 Sum_probs=31.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
...||||||+|.|||+||..+. .|.+|+||||.+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-------~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-------KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-------cCCCEEEEecCCCC
Confidence 3479999999999999999973 46799999998763
No 264
>PRK10262 thioredoxin reductase; Provisional
Probab=97.73 E-value=0.00035 Score=70.65 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=66.8
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC---cc--------CCCC-----ChhhHHHHHHHHHhCCCEEEc
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET---TI--------CPTG-----TPGNREAALKVLSARKVQLVL 307 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~---~~--------l~~~-----~~~~~~~~~~~l~~~gV~v~~ 307 (538)
.++|+|||||+.|+.+|..+.+.+.+ +.+++... .+ ++.. .+.+.+.+.+.....++++..
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 82 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe
Confidence 57899999999999999999887665 77775321 11 0111 123456667777778888777
Q ss_pred CceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCC
Q 009310 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376 (538)
Q Consensus 308 ~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~ 376 (538)
+ .|..++... +.+++.. +...+.+|.||+|+|..|+.+
T Consensus 83 ~-~v~~v~~~~-----------------------~~~~v~~-------~~~~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 83 D-HINKVDLQN-----------------------RPFRLTG-------DSGEYTCDALIIATGASARYL 120 (321)
T ss_pred e-EEEEEEecC-----------------------CeEEEEe-------cCCEEEECEEEECCCCCCCCC
Confidence 5 455665433 3444431 223689999999999998744
No 265
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.73 E-value=0.00018 Score=75.94 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=29.9
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
+||+||||||+|+++|..|++... ..|++|+|||++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~--~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPL--TKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcc--cCCCeEEEEeCC
Confidence 589999999999999999987210 148899999994
No 266
>PTZ00367 squalene epoxidase; Provisional
Probab=97.71 E-value=0.00016 Score=78.34 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+..+||+|||||++|+++|..|++ .|++|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar------~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSK------QGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHh------cCCEEEEEcccc
Confidence 345899999999999999999998 788999999975
No 267
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.71 E-value=0.00014 Score=74.56 Aligned_cols=69 Identities=19% Similarity=0.082 Sum_probs=51.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------CChhhHHHHHHHHHhCCCEEEcCceeeEE
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~gV~v~~~~~V~~i 314 (538)
+++|+|||+|+.|+++|..|++.+.+ |+++++.+.+... .+........+.+.+.|++++.++.+..+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 67999999999999999999887655 9999997765421 12222333455677779999999888665
Q ss_pred e
Q 009310 315 R 315 (538)
Q Consensus 315 ~ 315 (538)
.
T Consensus 95 ~ 95 (352)
T PRK12770 95 E 95 (352)
T ss_pred c
Confidence 4
No 268
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.71 E-value=0.00025 Score=70.31 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=70.5
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC----------------------------------------
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------------------------------------- 285 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------------------------------------- 285 (538)
.|+|||+|++|+-+|..|++.+.+ |+++++.......
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 589999999999999999876554 9999987532110
Q ss_pred ---------C-ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCC
Q 009310 286 ---------G-TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (538)
Q Consensus 286 ---------~-~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 355 (538)
. ...+.+.+.+.+++.|++++.+++++++..++ +.+.+.+. +
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-----------------------~~~~~~~~-----~ 130 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD-----------------------DRVVVIVR-----G 130 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-----------------------CEEEEEEc-----C
Confidence 0 02234556677788899999999999987644 34444432 1
Q ss_pred cceEEeccEEEEecCCCC
Q 009310 356 ESQIFEADLVLWTVGSKP 373 (538)
Q Consensus 356 ~g~~l~~D~vI~a~G~~p 373 (538)
++.++.+|.||.|+|...
T Consensus 131 ~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 131 GEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccEEEEeCEEEECCCcch
Confidence 456899999999999864
No 269
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.71 E-value=0.00011 Score=77.81 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=51.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------C--CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------P--TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+++|..|++.+.+ |+++++.+.+. + ..+.++.....+.+++.||+++++..+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 367999999999999999999887665 99999876542 1 134455566667788999999998754
No 270
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.68 E-value=0.00014 Score=77.49 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------C--CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------P--TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+.+|..++..+.+ |+++++.+.+. + ..+..+.....+.+++.||++++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence 468999999999999999999887665 99999876542 1 124455556667889999999999866
No 271
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.67 E-value=0.00014 Score=79.36 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=41.1
Q ss_pred CCCeeeCCCcccC-----CCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVK-----GHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~-----~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.|.||...|+. ..|++||+|+|+.. .+...+.-......|+-.|+.++.++......
T Consensus 351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 415 (575)
T PRK05945 351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQG 415 (575)
T ss_pred CCCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888777763 58999999999752 12111222345677889999999999876543
No 272
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.64 E-value=0.00021 Score=75.71 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=47.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHH--HHhcCcEEEEecCCccCC--------CCC--hhhHHHHHHHHHhCCCEEEcCcee
Q 009310 244 LIRVAVVGCGYSGVELAATVSER--LEEKGIVQAINVETTICP--------TGT--PGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~--~~~~~~Vtlv~~~~~~l~--------~~~--~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
+++|+|||+|+.|+.+|..|+.. +.+ |+++++.+.+.. ... ..+...+.+.++..+|+++.|..+
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v 102 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL 102 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE
Confidence 57999999999999999999863 333 999999876542 111 122334556677789999988655
No 273
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.64 E-value=0.0019 Score=67.90 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=35.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
..+||||||+|.+|+.+|..|++ .|.+|+++|++++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~------~GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSV------NGKKVLHMDRNPYYGGE 42 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhh------CCCEEEEecCCCCcCcc
Confidence 45899999999999999999999 78899999999986544
No 274
>PRK06834 hypothetical protein; Provisional
Probab=97.64 E-value=0.00049 Score=73.63 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=68.9
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC---CC---CC-------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC---PT---GT------------------------------- 287 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l---~~---~~------------------------------- 287 (538)
..|+|||+|++|+-+|.+|++.+.+ |+++++.+... +. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 4899999999999999999987755 88887654211 00 00
Q ss_pred -------------------hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEee
Q 009310 288 -------------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 348 (538)
Q Consensus 288 -------------------~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 348 (538)
..+.+.+.+.+++.||+++.++.+++++.++ +++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-----------------------~~v~v~~ 137 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD-----------------------TGVDVEL 137 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-----------------------CeEEEEE
Confidence 1112223445567788899998888887654 4566654
Q ss_pred cccccCCcceEEeccEEEEecCCCCC
Q 009310 349 QPAIKGLESQIFEADLVLWTVGSKPL 374 (538)
Q Consensus 349 ~~~~~~~~g~~l~~D~vI~a~G~~p~ 374 (538)
. +++++.+|+||.|.|....
T Consensus 138 ~------~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 138 S------DGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred C------CCCEEEeCEEEEecCCCCC
Confidence 2 4568999999999999775
No 275
>PRK12831 putative oxidoreductase; Provisional
Probab=97.64 E-value=0.00018 Score=76.39 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------CC--CChh-hHHHHHHHHHhCCCEEEcCcee
Q 009310 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPG-NREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 242 ~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~~--~~~~-~~~~~~~~l~~~gV~v~~~~~V 311 (538)
..+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. +. ++.+ +.....+.+++.||++++++.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 3478999999999999999999988766 99999865431 11 1222 5555667788999999999865
No 276
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.64 E-value=0.00029 Score=73.91 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------CChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
+++|+|||+|+.|+.+|..|+..+.. |+++++.+.+... ++.++.+...+.|++.||+|+++.++-
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 57999999999999999999998877 9999987655321 245677788899999999999998764
No 277
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.63 E-value=5.7e-05 Score=80.72 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=35.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p 124 (538)
+.+||||||||++||+||..|++ .|++|+|+||++..+...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~------~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR------AGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh------CCCEEEEEEecCCCCcce
Confidence 35899999999999999999999 788999999988755433
No 278
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.60 E-value=0.00022 Score=76.21 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=52.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------CC--CChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
.+++|+|||+|+.|+++|..|++.+.+ |+++++.+.+. +. ++........+.+++.||++++++.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence 358999999999999999999987655 99999877642 21 234555556677889999999998763
No 279
>PRK07208 hypothetical protein; Provisional
Probab=97.60 E-value=6.9e-05 Score=80.23 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=36.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
+++++|+|||||++||+||+.|.+ .|++|+|+|++++++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~------~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK------RGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCce
Confidence 345799999999999999999998 68899999999986654
No 280
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.58 E-value=6.2e-05 Score=79.80 Aligned_cols=40 Identities=33% Similarity=0.544 Sum_probs=34.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
++|+|||||+|||+||+.|++.+ .+++|+|+|++++.+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G----~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKG----PDADITLLEASDRLGGK 40 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC----CCCCEEEEEcCCCCcce
Confidence 47999999999999999999832 23899999999986654
No 281
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.57 E-value=0.00063 Score=74.04 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=69.4
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC------------CCC----ChhhHHHHHHHHHhCCCEEEcC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC------------PTG----TPGNREAALKVLSARKVQLVLG 308 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l------------~~~----~~~~~~~~~~~l~~~gV~v~~~ 308 (538)
-.|+|||||+.|+.+|..+++.+.+ |+++++.. +. +.. ...+.+.+.+.+++.|++++ +
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~ 79 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-Q 79 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-c
Confidence 3799999999999999999886655 99998753 21 111 13455666777888899986 6
Q ss_pred ceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCC
Q 009310 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378 (538)
Q Consensus 309 ~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l 378 (538)
..|..++.++ +...+... ++ .+.+|.||+|+|.+|..+-+
T Consensus 80 ~~V~~i~~~~-----------------------~~~~V~~~------~g-~~~a~~lVlATGa~p~~~~i 119 (555)
T TIGR03143 80 AEVLDVDFDG-----------------------DIKTIKTA------RG-DYKTLAVLIATGASPRKLGF 119 (555)
T ss_pred cEEEEEEecC-----------------------CEEEEEec------CC-EEEEeEEEECCCCccCCCCC
Confidence 6788777533 22333321 33 58899999999999875433
No 282
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.55 E-value=7.9e-05 Score=82.83 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=36.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
....++|+|||||++||+||+.|.+ .|++|+|+|++++.+..
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~------~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLS------MGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeccccCCCc
Confidence 3456899999999999999999988 78899999999876544
No 283
>PLN02268 probable polyamine oxidase
Probab=97.54 E-value=8.6e-05 Score=78.42 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=35.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~ 125 (538)
++|+|||||.|||+||+.|.+ .|++|+|+|++++.+.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~------~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD------ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCceee
Confidence 489999999999999999988 6889999999999766544
No 284
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.53 E-value=9.5e-05 Score=73.74 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=39.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p 124 (538)
....||+|||||||||+||++|.++--..+...+|.|+|+......+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 345899999999999999999987655456789999999988755444
No 285
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.53 E-value=0.00025 Score=80.05 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=51.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------C--CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------P--TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. | .++....+...+.+++.||++++++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 468999999999999999999988766 99999865432 1 123445555567788999999998755
No 286
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=8.3e-05 Score=77.07 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=36.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~ 125 (538)
++|+|+|||.|||+||+.|++ +|++|||+|.+++.+.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~------~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD------AGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh------CCCceEEEeccCccCceee
Confidence 589999999999999999998 7899999999998766554
No 287
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.0001 Score=76.38 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=38.1
Q ss_pred CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 009310 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 454 (538)
Q Consensus 400 ~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~ 454 (538)
.+|+++..+|+|.+|-.... .-...|..||-.|+-|.+....++++
T Consensus 352 ~tLEtK~I~GLf~AGQINGT---------tGYEEAAaQGliAGiNAal~~~~~~p 397 (621)
T COG0445 352 PTLETKKIKGLFFAGQINGT---------TGYEEAAAQGLIAGINAALKVQGKEP 397 (621)
T ss_pred cchhhceecceEEcccccCC---------chhHHHHhhhHHHHHHHHHHhcCCCC
Confidence 46788788999999988874 34567999999999999988888763
No 288
>PRK06184 hypothetical protein; Provisional
Probab=97.50 E-value=0.00094 Score=71.93 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=68.5
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-----C---------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-----G--------------------------------- 286 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-----~--------------------------------- 286 (538)
..|+|||+|++|+-+|..|++.+.+ |+++++.+.+... +
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 3799999999999999999987765 7777654322100 0
Q ss_pred --------------------C-------hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCccccccccc
Q 009310 287 --------------------T-------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339 (538)
Q Consensus 287 --------------------~-------~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
+ ..+.+.+.+.+++.|+++..++++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--------------------- 139 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--------------------- 139 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC---------------------
Confidence 0 1122334555667788888888888887654
Q ss_pred CCCceEEeecccccCCcceEEeccEEEEecCCCCC
Q 009310 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (538)
Q Consensus 340 ~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~ 374 (538)
+++++.+. ..++++++.+|.||-|.|....
T Consensus 140 --~~v~v~~~---~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 140 --DGVTARVA---GPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred --CcEEEEEE---eCCCeEEEEeCEEEECCCCchH
Confidence 45555442 1125678999999999998753
No 289
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.49 E-value=0.00069 Score=69.16 Aligned_cols=94 Identities=21% Similarity=0.178 Sum_probs=61.4
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEec-CCccCCC-CC------------------------------------
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINV-ETTICPT-GT------------------------------------ 287 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~-~~~~l~~-~~------------------------------------ 287 (538)
.|+|||||..|+|.|..+++.+.+ |.++.. .+.+... ..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 489999999999999999998887 888843 2222211 00
Q ss_pred -----------------hhhHHHHHHHHHh-CCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeec
Q 009310 288 -----------------PGNREAALKVLSA-RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349 (538)
Q Consensus 288 -----------------~~~~~~~~~~l~~-~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 349 (538)
..+...+.+.|++ .+++++ ...|+++..+++.. .+|...
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v--------------------~GV~~~-- 134 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKV--------------------KGVVTK-- 134 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEE--------------------EEEEET--
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeE--------------------EEEEeC--
Confidence 1223445566666 678886 45788887654221 344443
Q ss_pred ccccCCcceEEeccEEEEecCC
Q 009310 350 PAIKGLESQIFEADLVLWTVGS 371 (538)
Q Consensus 350 ~~~~~~~g~~l~~D~vI~a~G~ 371 (538)
+|+.+.+|.||+|||.
T Consensus 135 ------~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 135 ------DGEEIEADAVVLATGT 150 (392)
T ss_dssp ------TSEEEEECEEEE-TTT
T ss_pred ------CCCEEecCEEEEeccc
Confidence 7899999999999998
No 290
>PLN02463 lycopene beta cyclase
Probab=97.49 E-value=0.00079 Score=70.92 Aligned_cols=96 Identities=24% Similarity=0.194 Sum_probs=66.4
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-CC-C-------------------------------------
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-PT-G------------------------------------- 286 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-~~-~------------------------------------- 286 (538)
.|+|||||++|.-+|..|++.+.+ |.++++.+... +. .
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 899999999999999999876544 88888754221 10 0
Q ss_pred ------ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEE
Q 009310 287 ------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (538)
Q Consensus 287 ------~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l 360 (538)
...+.+.+.+.+.+.||+++ ...|++++.++ +.+.+.+. +|+++
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-----------------------~~~~V~~~------dG~~i 156 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE-----------------------SKSLVVCD------DGVKI 156 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-----------------------CeEEEEEC------CCCEE
Confidence 01112334455567799986 46788887654 44555432 67789
Q ss_pred eccEEEEecCCCCC
Q 009310 361 EADLVLWTVGSKPL 374 (538)
Q Consensus 361 ~~D~vI~a~G~~p~ 374 (538)
++|.||.|+|....
T Consensus 157 ~A~lVI~AdG~~s~ 170 (447)
T PLN02463 157 QASLVLDATGFSRC 170 (447)
T ss_pred EcCEEEECcCCCcC
Confidence 99999999998754
No 291
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.47 E-value=0.00036 Score=74.44 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=51.4
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC---------CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP---------TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+.. ..+........+.+.+.||++++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 216 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEV 216 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 357999999999999999999987665 999998765531 123344455567788999999999866
No 292
>PRK08244 hypothetical protein; Provisional
Probab=97.47 E-value=0.00099 Score=71.59 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=68.5
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC----------------------------------------
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------------------------------------- 285 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------------------------------------- 285 (538)
.|+|||+|++|+-+|..|++.+.+ |+++++.+...+.
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 799999999999999999887765 7777764321100
Q ss_pred ---C-------------C-hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEee
Q 009310 286 ---G-------------T-PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 348 (538)
Q Consensus 286 ---~-------------~-~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 348 (538)
+ + ..+.+.+.+.+++.|++++.+++++++..++ +++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-----------------------~~v~v~~ 137 (493)
T PRK08244 81 RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG-----------------------DGVEVVV 137 (493)
T ss_pred cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-----------------------CeEEEEE
Confidence 0 0 1122334455667899999999999887654 4555544
Q ss_pred cccccCCcc-eEEeccEEEEecCCCCC
Q 009310 349 QPAIKGLES-QIFEADLVLWTVGSKPL 374 (538)
Q Consensus 349 ~~~~~~~~g-~~l~~D~vI~a~G~~p~ 374 (538)
.+ . ++ +++.+|+||-|.|....
T Consensus 138 ~~---~-~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 138 RG---P-DGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred Ee---C-CccEEEEeCEEEECCCCChH
Confidence 31 1 23 57999999999999764
No 293
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.47 E-value=0.00033 Score=80.99 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=52.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------CChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+... .+.++.+...+.+++.||++++++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v 503 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI 503 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 358999999999999999999998776 9999987654221 24556666778899999999998654
No 294
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.46 E-value=0.00092 Score=69.79 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCC
Q 009310 292 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 371 (538)
Q Consensus 292 ~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~ 371 (538)
+.+.+.+.+.|++++.+++|++++.++ +.+.+.+. +++.+.+|+||.|.|.
T Consensus 115 ~~L~~~~~~~gv~v~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~~~ad~vI~AdG~ 165 (403)
T PRK07333 115 NALRKRAEALGIDLREATSVTDFETRD-----------------------EGVTVTLS------DGSVLEARLLVAADGA 165 (403)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEcC-----------------------CEEEEEEC------CCCEEEeCEEEEcCCC
Confidence 334455666788888888888887644 45555532 5678999999999998
Q ss_pred CCC
Q 009310 372 KPL 374 (538)
Q Consensus 372 ~p~ 374 (538)
...
T Consensus 166 ~S~ 168 (403)
T PRK07333 166 RSK 168 (403)
T ss_pred ChH
Confidence 765
No 295
>PLN02576 protoporphyrinogen oxidase
Probab=97.45 E-value=0.00013 Score=78.41 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=35.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCC-CCEEEEEcCCCCcccCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDK-KPQVLLVDQSERFVFKP 124 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~-g~~V~lie~~~~~~~~p 124 (538)
..++|+|||||++||+||++|.+ . |++|+|+|++++.+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~------~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS------KHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------hcCCCEEEEecCCCCCCce
Confidence 44689999999999999999998 5 78999999999865543
No 296
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.45 E-value=0.0012 Score=68.79 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=29.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
..+|+|||+|+.|+-+|..|++.+.+ |+++++.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcc
Confidence 46899999999999999999886655 888887543
No 297
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.45 E-value=0.00012 Score=77.88 Aligned_cols=43 Identities=35% Similarity=0.492 Sum_probs=34.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
+++|+|||||++||+||+.|.+.+. ..|++|+|+|++++.+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~--~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIP--ELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC--CCCCcEEEEEcCCcCcce
Confidence 3699999999999999999998310 018999999999986544
No 298
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.43 E-value=0.00014 Score=74.80 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=45.4
Q ss_pred eCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCceec-CcccEE
Q 009310 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ-NLGEMM 466 (538)
Q Consensus 398 vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p~~~~-~~g~~~ 466 (538)
.+++|+++..|++|++|..... .-...|..||..|+.|+...+.|+++..+... ..|.++
T Consensus 321 l~~~l~~k~~~~l~~AGqi~g~---------~Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~~~iG~l~ 381 (436)
T PRK05335 321 LDPTLQLKKRPNLFFAGQITGV---------EGYVESAASGLLAGINAARLALGKEPVIPPPTTALGALL 381 (436)
T ss_pred CchhccccCCCCEEeeeeecCc---------hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCcHHHHH
Confidence 4578888889999999999985 23348999999999999999999875443222 245544
No 299
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.42 E-value=0.00044 Score=78.78 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------CChhhHHHHHHHHHhCCCEEEcCc
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
.+++|+|||||+.|+.+|..|++.+.+ |+++++.+.+... .+.+..+...+.+.+.||+++++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~ 608 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGC 608 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEec
Confidence 357999999999999999999987765 9999987654221 233344445567788899999874
No 300
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.42 E-value=0.00033 Score=75.03 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=60.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
..++|+|||+|++|+++|..|++ .|++|+++|+++.. ......+.++..+++++.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~------~G~~V~~~d~~~~~------------------~~~~~~~~l~~~gv~~~~~ 70 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE------LGARVTVVDDGDDE------------------RHRALAAILEALGATVRLG 70 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCchh------------------hhHHHHHHHHHcCCEEEEC
Confidence 34689999999999999999988 68899999976530 0112334455667777654
Q ss_pred eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCCCCCCcccc
Q 009310 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF 214 (538)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p~ipG~~~~ 214 (538)
.-. . ....+|.+|+++|..|..|.+....+.
T Consensus 71 ~~~----------------------~----~~~~~D~Vv~s~Gi~~~~~~~~~a~~~ 101 (480)
T PRK01438 71 PGP----------------------T----LPEDTDLVVTSPGWRPDAPLLAAAADA 101 (480)
T ss_pred CCc----------------------c----ccCCCCEEEECCCcCCCCHHHHHHHHC
Confidence 310 0 123589999999998887755554333
No 301
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.42 E-value=0.00049 Score=67.09 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=33.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...+|||||||-.|.+.|..|.+.- .+.|++|+++|+++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~--rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERA--RDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHh--hcCCceEEEEeccC
Confidence 3578999999999999999998754 34679999999988
No 302
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.42 E-value=0.00045 Score=68.46 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=76.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEEe
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (538)
-+++.+|||||+-||+.+.--.+ -|-+||++|--++ +.+.++ .++...+.+.+.+.+++|..+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~r------LGseVT~VEf~~~----------i~~~mD-~Eisk~~qr~L~kQgikF~l~ 272 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSR------LGSEVTVVEFLDQ----------IGGVMD-GEISKAFQRVLQKQGIKFKLG 272 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHh------cCCeEEEEEehhh----------hccccC-HHHHHHHHHHHHhcCceeEec
Confidence 45899999999999999998888 4669999998776 344433 455667788888899999986
Q ss_pred -eEEEEcCCCCcCcCCCceeecccEEEcC-----CceEEEeeEEEEeCCCCCCCCC
Q 009310 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLE-----SGLIVEYDWLVLSLGAEPKLDV 207 (538)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~-----~g~~~~yD~lVlAtG~~~~~p~ 207 (538)
+|.....+..- .+ .+.++ ..+++++|.|.+++|-+|+.-.
T Consensus 273 tkv~~a~~~~dg-----~v-----~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 273 TKVTSATRNGDG-----PV-----EIEVENAKTGKKETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred cEEEEeeccCCC-----ce-----EEEEEecCCCceeEEEeeEEEEEccCcccccC
Confidence 78887655431 01 22222 2348999999999998886543
No 303
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.40 E-value=0.00049 Score=76.19 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC---------CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP---------TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+..|..|+..+.+ |+++++.+.+.. .++....+...+.+++.||++++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 478999999999999999999987765 999998876431 134455555667788999999999865
No 304
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.38 E-value=0.00099 Score=69.06 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+++=|||+|.|+|+||.+|-|-+ .-+|-+|+|+|+.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa--~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDA--KMPGENIHILEELDV 40 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccC--CCCccceEEEeCCCC
Confidence 468899999999999999998754 347889999999774
No 305
>PRK07588 hypothetical protein; Provisional
Probab=97.37 E-value=0.0014 Score=68.25 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=28.2
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
+|+|||||+.|+-+|..|++.+.+ |+++++.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCC
Confidence 799999999999999999887655 888887544
No 306
>PRK09897 hypothetical protein; Provisional
Probab=97.37 E-value=0.0017 Score=69.68 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=28.8
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
++|+|||+|++|+-+|..|.+.... -.|+++++...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~-l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTP-LSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCC-CcEEEEecCCCC
Confidence 4899999999999999999875432 239999985433
No 307
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.37 E-value=0.00078 Score=73.52 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=41.9
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.|.+|...++ ..|++||+|+|+.. .+...+.-......++-.|+.++.++......
T Consensus 357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 357 MGGIETDINCET-RIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred CCCeeECcCccc-ccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 577999999998 89999999999742 11111111245667889999999998876543
No 308
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.36 E-value=0.00056 Score=75.81 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=51.7
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------C--CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------P--TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+.+|..|+..+.+ |+++++.+.+. + ..+..+.+...+.+++.||++++++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v 266 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF 266 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc
Confidence 368999999999999999999987765 99999877642 2 124455566667788899999988754
No 309
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.34 E-value=0.0006 Score=75.79 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC-------C--CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------P--TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+..|..|++.+.+ |+++++.+.+. + .++..+.+...+.+++.||++++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 478999999999999999999987766 99999876542 1 123444455567788899999999865
No 310
>PLN02487 zeta-carotene desaturase
Probab=97.33 E-value=0.00058 Score=73.86 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=34.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
.+++|+|||||++||++|..|.+ .|++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~------~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLD------QGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh------CCCeeEEEecCCCCC
Confidence 44699999999999999999998 788999999988754
No 311
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.32 E-value=0.00047 Score=69.36 Aligned_cols=34 Identities=41% Similarity=0.729 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+.+|||||||.+|+++|..|.+ .|++|+|+|+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r------~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR------KGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH------cCCeEEEEeecc
Confidence 4699999999999999999999 688999999966
No 312
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.31 E-value=0.00091 Score=69.91 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=27.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||||+.|+-+|..|++.+.+ |+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLE---VLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCE---EEEEcCCC
Confidence 799999999999999999876654 99998765
No 313
>PRK05868 hypothetical protein; Validated
Probab=97.30 E-value=0.0018 Score=66.89 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=29.2
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
++|+|||||+.|+-+|..|++.+.+ |+++++.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCC
Confidence 4899999999999999999887655 8888876543
No 314
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.29 E-value=0.0024 Score=66.95 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.8
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.+|+|||||+.|+-+|..|++.+.+ |+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 4899999999999999999887655 888887553
No 315
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.29 E-value=0.00059 Score=73.04 Aligned_cols=81 Identities=26% Similarity=0.254 Sum_probs=62.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceeeEEecccccccc
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 323 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~ 323 (538)
+++|+|+|+|.+|+++|..|.+.+.+ |+++++.+. .....+.+.|++.||+++++..+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~----------- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT----------- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence 57999999999999999999887765 999887542 233445677888999998775322
Q ss_pred ccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCC
Q 009310 324 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~ 379 (538)
....+|+||.++|..|+.+++.
T Consensus 75 ----------------------------------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ----------------------------------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ----------------------------------ccCCCCEEEECCCcCCCCHHHH
Confidence 1134899999999999988653
No 316
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.28 E-value=0.00024 Score=75.64 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=35.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~ 125 (538)
++|+|||||.+||+||+.|.+.+.....+++|+|+|++++.+....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 6899999999999999999874210012479999999998765533
No 317
>PRK07538 hypothetical protein; Provisional
Probab=97.28 E-value=0.00025 Score=74.43 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=31.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+|+|||||+||+++|..|++ .|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ------RGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEEcCCc
Confidence 389999999999999999998 6889999999764
No 318
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.27 E-value=0.0014 Score=70.59 Aligned_cols=144 Identities=20% Similarity=0.210 Sum_probs=83.4
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC-------------------------------CCC------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-------------------------------TGT------ 287 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~-------------------------------~~~------ 287 (538)
|+|+|||+|++|+-.+..+.+.+-+ ++++++.+.+.. +++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6999999999999999999887766 888888654321 111
Q ss_pred -----hhhHHHHHHHHHhCCC--EEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEE
Q 009310 288 -----PGNREAALKVLSARKV--QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (538)
Q Consensus 288 -----~~~~~~~~~~l~~~gV--~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l 360 (538)
.++.+++++..+..++ .+.+++.|.+++..++.. ..+...+... .++..++.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~------------------~~~~W~V~~~---~~g~~~~~ 137 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFS------------------ATGKWEVTTE---NDGKEETE 137 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-------------------ETEEEEEET---TTTEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccC------------------CCceEEEEee---cCCeEEEE
Confidence 3456667777777777 588999999998643210 0033444432 22223455
Q ss_pred eccEEEEecCCC--CCCCCCCCCCCccCCCCcCCCCCeeeCCCcccC---CCCCEEEcccccc
Q 009310 361 EADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVK---GHPRIFALGDSSA 418 (538)
Q Consensus 361 ~~D~vI~a~G~~--p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~~---~~~~VfaiGD~~~ 418 (538)
.+|.||+|+|.- |+.|.-.-. |++. -.|.+.--..++.+ ...+|-++|-..+
T Consensus 138 ~fD~VvvatG~~~~P~~P~~~~~-----G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 138 EFDAVVVATGHFSKPNIPEPSFP-----GLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp EECEEEEEE-SSSCESB-----C-----TGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred EeCeEEEcCCCcCCCCCChhhhh-----hhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 799999999984 554431011 2221 14555554444432 2466888887665
No 319
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.27 E-value=0.0021 Score=66.58 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=27.8
Q ss_pred eEEEECCChhHHHHHHHHHHHH-HhcCcEEEEecCCc
Q 009310 246 RVAVVGCGYSGVELAATVSERL-EEKGIVQAINVETT 281 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~-~~~~~Vtlv~~~~~ 281 (538)
.|+|||+|+.|+-+|..|++.+ .+ |+++++.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCc
Confidence 3899999999999999999877 65 888887543
No 320
>PRK07190 hypothetical protein; Provisional
Probab=97.27 E-value=0.003 Score=67.61 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=66.0
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT--------------------------------------- 285 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~--------------------------------------- 285 (538)
..|+|||+|++|+-+|.+|++.+.+ |.++++.+.....
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 4799999999999999999876654 6666653221000
Q ss_pred -----------------------CC-hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCC
Q 009310 286 -----------------------GT-PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341 (538)
Q Consensus 286 -----------------------~~-~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (538)
.+ ..+...+.+.+++.|+++..+++|+++..++
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~----------------------- 139 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ----------------------- 139 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-----------------------
Confidence 00 0112233445667899999999999887654
Q ss_pred CceEEeecccccCCcceEEeccEEEEecCCCC
Q 009310 342 DKYILELQPAIKGLESQIFEADLVLWTVGSKP 373 (538)
Q Consensus 342 ~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p 373 (538)
+++++.+. +++++.++.||.|.|.+.
T Consensus 140 ~~v~v~~~------~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 140 AGCLTTLS------NGERIQSRYVIGADGSRS 165 (487)
T ss_pred CeeEEEEC------CCcEEEeCEEEECCCCCH
Confidence 44554432 456899999999999864
No 321
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.26 E-value=0.00035 Score=71.63 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.4
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
.||+|||||++|+++|..|++ .|.+|+|+|++++.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~------~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ------LNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCCCC
Confidence 589999999999999999998 678999999987743
No 322
>PLN02661 Putative thiazole synthesis
Probab=97.26 E-value=0.00038 Score=69.95 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=33.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
.....||+|||||++|+.||+.|++. ++++|+|||++...
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~ 128 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSP 128 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCccc
Confidence 34457999999999999999999972 47899999998753
No 323
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.25 E-value=0.00033 Score=75.35 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...+||||||||..|+++|+.|++ +|++|+|||+++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~------rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG------RGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCC
Confidence 345899999999999999999998 7889999999865
No 324
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.25 E-value=0.0014 Score=68.82 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=44.1
Q ss_pred CCeEEEECCChhHHHHHHHHHH-HHHhcCcEEEEecCCccCCC----CC---h---hhHHHHHHHHHhCCCEEEcCcee
Q 009310 244 LIRVAVVGCGYSGVELAATVSE-RLEEKGIVQAINVETTICPT----GT---P---GNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~-~~~~~~~Vtlv~~~~~~l~~----~~---~---~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
+++|+|||+|++|+.+|..|.. .+.+ |+++++.+.+... .. + .+...+...+...++++..|..|
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 6799999999999999997754 3333 9999998766422 11 1 22333344455678888865444
No 325
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.22 E-value=0.00036 Score=75.04 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+...+||+|||||..|+++|+.|++ +|++|+|+|+++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~------rG~~V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAG------RGLKVLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHh------CCCcEEEEECCCC
Confidence 3455899999999999999999998 7889999999964
No 326
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.22 E-value=0.00032 Score=74.49 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=33.3
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
+|+|||||++||+||+.|.+ .|++|+|+|++++.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~------~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD------AGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCC
Confidence 58999999999999999998 68899999999876554
No 327
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.20 E-value=0.00055 Score=75.52 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
....+|+||||||+||++|..|+++ .|++|+|||+.+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~-----~Gi~v~IiE~~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAF-----PDITTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcC-----CCCcEEEEEcCC
Confidence 3467999999999999999999982 378999999976
No 328
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.20 E-value=0.0016 Score=67.08 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=28.2
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l 283 (538)
.|+|||||+.|+.+|..|++..+ ...|.++++.+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~-g~~V~lle~~~~~~ 37 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARP-DFRIRVIEAGRTIG 37 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCC
Confidence 38999999999999999986511 12399999876443
No 329
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.20 E-value=0.00035 Score=71.32 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=34.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
....+|||||||.|||+||.+|.+.+ ..+++|+|.+++.+.+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~g-----f~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENG-----FIDVLILEASDRIGGR 60 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhC-----CceEEEEEeccccCce
Confidence 34469999999999999999999754 4699999999985433
No 330
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.19 E-value=0.00038 Score=76.12 Aligned_cols=36 Identities=42% Similarity=0.641 Sum_probs=32.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.++.+|+|||||+|||++|..|++ .|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r------~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK------KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh------cCCeEEEEeccc
Confidence 455899999999999999999999 788999999965
No 331
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.17 E-value=0.0012 Score=72.05 Aligned_cols=67 Identities=22% Similarity=0.207 Sum_probs=50.8
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC---------CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP---------TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 242 ~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
..+++|+|||+|++|+-+|..+++.+.+ |+++++.+.+.. .++.+..+.-.+.+++.|++++.+..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 3478999999999999999999887765 999998665421 123344455556778899999988765
No 332
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.17 E-value=0.0042 Score=72.20 Aligned_cols=70 Identities=19% Similarity=0.105 Sum_probs=51.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC----------C-hhhHHHHHHHHHhC-CCEEEcCcee
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG----------T-PGNREAALKVLSAR-KVQLVLGYFV 311 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~----------~-~~~~~~~~~~l~~~-gV~v~~~~~V 311 (538)
..+|+|||+|+.|+..|..+++.+.+ |++++..+.+.... + .++.....+.+++. +|+++.++.|
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 35899999999999999999887665 99999876543211 1 12223445556656 5999999999
Q ss_pred eEEec
Q 009310 312 RCIRR 316 (538)
Q Consensus 312 ~~i~~ 316 (538)
..+..
T Consensus 240 ~~i~~ 244 (985)
T TIGR01372 240 FGYYD 244 (985)
T ss_pred EEEec
Confidence 88865
No 333
>PRK09126 hypothetical protein; Provisional
Probab=97.17 E-value=0.0037 Score=65.00 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
+|+|||||+.|+-+|..|++.+.+ |+++++.+.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 37 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPL 37 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCc
Confidence 799999999999999999887665 888887653
No 334
>PLN02568 polyamine oxidase
Probab=97.17 E-value=0.00049 Score=74.23 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=36.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (538)
+.++|+|||||+|||+||..|++.+. ...+++|+|+|++++.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCe
Confidence 34799999999999999999998542 1245899999999986554
No 335
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.16 E-value=0.00044 Score=73.75 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=41.9
Q ss_pred CCCCeeeCCCcccC-----CCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 392 ARGQAETDETLCVK-----GHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 392 ~~G~i~vd~~l~~~-----~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
-.|.+.+|++.|+. ..|++||+|.|+.. ......+-......++-.|+.+++++.+..+
T Consensus 398 t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 398 TYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred ecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 45779999888873 37999999999753 2221122224566788999999999987654
No 336
>PRK13984 putative oxidoreductase; Provisional
Probab=97.14 E-value=0.0014 Score=72.34 Aligned_cols=66 Identities=20% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC---------CCChhhHHHHHHHHHhCCCEEEcCcee
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP---------TGTPGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+++|+|||+|+.|+.+|..|.+.+.+ |+++++.+.+.. ..+.++.....+.+++.|++++.++.|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 478999999999999999999887665 999988765421 123344455567788999999999776
No 337
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.13 E-value=0.0036 Score=64.76 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=27.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.|+|||+|+.|.-+|..|++.+.+ |+++++.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCc
Confidence 389999999999999999887655 888888653
No 338
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.12 E-value=0.0032 Score=65.29 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=29.0
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.+|+|||||+.|+-+|..|++.+.+ |+++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR---VALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 3799999999999999999887655 899987654
No 339
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.11 E-value=0.0045 Score=67.31 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.6
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.+|+|||+|++|+-+|..|++.+.+ |+++++.
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~ 42 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVR---VLVLERW 42 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 4899999999999999999887654 6666654
No 340
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0054 Score=61.10 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=67.5
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC-c----------cCCC-----CChhhHHHHHHHHHhCCCEEEcC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET-T----------ICPT-----GTPGNREAALKVLSARKVQLVLG 308 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~-~----------~l~~-----~~~~~~~~~~~~l~~~gV~v~~~ 308 (538)
-.|+|||+|+.|+-.|.++.+...+. +.+++... . -.|. ..+++.+.+.+..+..|+++..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~- 80 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE- 80 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-
Confidence 37999999999999999998765331 33333310 0 0111 2356677777778888999988
Q ss_pred ceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCC
Q 009310 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376 (538)
Q Consensus 309 ~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~ 376 (538)
..|.+++..+ +.+.+.. ++++ +.++.||+|+|..+..+
T Consensus 81 ~~v~~v~~~~-----------------------~~F~v~t------~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 81 DEVEKVELEG-----------------------GPFKVKT------DKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEEEeecC-----------------------ceEEEEE------CCCe-EEEeEEEECcCCcccCC
Confidence 6777777643 2344442 2555 99999999999988744
No 341
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.10 E-value=0.0044 Score=64.39 Aligned_cols=99 Identities=24% Similarity=0.331 Sum_probs=69.2
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC-CccCCCC-C-----------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE-TTICPTG-T----------------------------------- 287 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~-~~~l~~~-~----------------------------------- 287 (538)
..|+|||||++|+-+|..|++.+.+ |+++++. ..+.+.. .
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~---V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLD---VTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDD 79 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEec
Confidence 4899999999999999999998865 9999886 2222110 0
Q ss_pred ------------------------hhhHHHHHHHHHhCC-CEEEcCceeeEEeccccccccccCCCCCcccccccccCCC
Q 009310 288 ------------------------PGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 342 (538)
Q Consensus 288 ------------------------~~~~~~~~~~l~~~g-V~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
..+.+.+.+.+.+.+ |+++.++.|+.++.++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-----------------------~ 136 (387)
T COG0654 80 GGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-----------------------D 136 (387)
T ss_pred CCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-----------------------C
Confidence 112233445555555 8888888888888765 4
Q ss_pred ceEEeecccccCCcceEEeccEEEEecCCCCC
Q 009310 343 KYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (538)
Q Consensus 343 ~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~ 374 (538)
.+.+.+. . +|+++.||+||-|=|....
T Consensus 137 ~v~v~l~----~-dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 137 GVTVTLS----F-DGETLDADLLVGADGANSA 163 (387)
T ss_pred ceEEEEc----C-CCcEEecCEEEECCCCchH
Confidence 4555442 2 6679999999999997543
No 342
>PRK06753 hypothetical protein; Provisional
Probab=97.10 E-value=0.0033 Score=64.83 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=28.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
+|+|||||++|+-+|..|++.+.+ |+++++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 799999999999999999887665 888887654
No 343
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.07 E-value=0.00058 Score=71.67 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=29.6
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
||||||+|.|||+||+.+++ .|.+|+||||.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae------~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE------AGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH------TTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhh------hcCeEEEEEeeccc
Confidence 79999999999999999999 67899999998863
No 344
>PRK08013 oxidoreductase; Provisional
Probab=97.07 E-value=0.0044 Score=64.70 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=29.2
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
..|+|||+|++|.-+|..|++.+.+ |+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCC
Confidence 3799999999999999999887665 899988654
No 345
>PLN02676 polyamine oxidase
Probab=97.06 E-value=0.00069 Score=72.40 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=35.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCC-EEEEEcCCCCcccC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFK 123 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~-~V~lie~~~~~~~~ 123 (538)
...++|+|||||++||+||.+|++ .|+ +|+|+|++++.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~------~g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSE------AGIEDILILEATDRIGGR 65 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------cCCCcEEEecCCCCCCCc
Confidence 345799999999999999999998 566 69999999985543
No 346
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.05 E-value=0.0027 Score=66.03 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.9
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
..|+|||||+.|+-+|..|++.+.+ |+++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCC
Confidence 4899999999999999999876654 88888754
No 347
>PRK07121 hypothetical protein; Validated
Probab=97.04 E-value=0.00093 Score=71.73 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
...||||||+|.||++||.++++ .|.+|+|+||....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae------~G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAA------AGARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCCC
Confidence 45899999999999999999998 68899999998753
No 348
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.00 E-value=0.00076 Score=72.46 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=32.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
+||||||||.+||++|..|++ .|++|+|+|+++..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~------~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV------KGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH------CCCcEEEEECCCCCC
Confidence 489999999999999999999 788999999998643
No 349
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.027 Score=59.43 Aligned_cols=140 Identities=15% Similarity=0.211 Sum_probs=82.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC------------------------------CC--hhhH
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT------------------------------GT--PGNR 291 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~------------------------------~~--~~~~ 291 (538)
-.+|+|||+|++|+-+|..|.+.+... +.++++.+.+... ++ ....
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 358999999999999999999887664 7777776433211 00 1257
Q ss_pred HHHHHHHHhCCCE--EEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEec
Q 009310 292 EAALKVLSARKVQ--LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 369 (538)
Q Consensus 292 ~~~~~~l~~~gV~--v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~ 369 (538)
+++...+++.++. +..++.|+.+..+.+. ...++... .+..++ +.+|.||+|+
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~---------------------~~w~V~~~---~~~~~~-~~a~~vV~AT 140 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDT---------------------KRWTVTTS---DGGTGE-LTADFVVVAT 140 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCC---------------------CeEEEEEc---CCCeee-EecCEEEEee
Confidence 7888888887764 4445556555544321 34444432 221222 7799999999
Q ss_pred CCC--CCCCCCCCCCCccCCCCcCCCCCeeeCCCccc---CCCCCEEEcccccc
Q 009310 370 GSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCV---KGHPRIFALGDSSA 418 (538)
Q Consensus 370 G~~--p~~~~l~~~~~~~~~~~l~~~G~i~vd~~l~~---~~~~~VfaiGD~~~ 418 (538)
|.- |+.|-+.. .+ +..|.+.--..+.- -..++|-+||-.++
T Consensus 141 G~~~~P~iP~~~G-------~~-~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 141 GHLSEPYIPDFAG-------LD-EFKGRILHSADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred cCCCCCCCCCCCC-------cc-CCCceEEchhcCCCccccCCCeEEEECCCcc
Confidence 993 44443322 11 12343332211111 13467888886666
No 350
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.99 E-value=0.0039 Score=67.20 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=77.3
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC-------CC-hh-h---HHHHHHHHHhCCCEEEcCceee
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-------GT-PG-N---REAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~-------~~-~~-~---~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
.+++|||.|..|.-+..++.+..++...||++...++.-.+ +. +. . .-.-.++.+++||+++++.++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 58999999999999999999866655568887765543221 11 11 1 1223467889999999999999
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~ 379 (538)
.|+.+. ..|+.+ .|.++.+|-+|+|||..|..+..+
T Consensus 84 ~idr~~-----------------------k~V~t~--------~g~~~~YDkLilATGS~pfi~PiP 119 (793)
T COG1251 84 QIDRAN-----------------------KVVTTD--------AGRTVSYDKLIIATGSYPFILPIP 119 (793)
T ss_pred EeccCc-----------------------ceEEcc--------CCcEeecceeEEecCccccccCCC
Confidence 999865 334332 789999999999999999865544
No 351
>PRK06996 hypothetical protein; Provisional
Probab=96.99 E-value=0.0056 Score=63.82 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=65.8
Q ss_pred CeEEEECCChhHHHHHHHHHHHHH-hcCcEEEEecCCccCCC--------------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLE-EKGIVQAINVETTICPT-------------------------------------- 285 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~-~~~~Vtlv~~~~~~l~~-------------------------------------- 285 (538)
..|+|||||++|.-+|..|++.+. +.-.|+++++.+..-+.
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 91 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRG 91 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCC
Confidence 589999999999999999987642 10127777764211000
Q ss_pred -------------C--------ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCce
Q 009310 286 -------------G--------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344 (538)
Q Consensus 286 -------------~--------~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 344 (538)
. ...+.+.+.+.+++.|++++.++++++++.++ +++
T Consensus 92 ~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-----------------------~~v 148 (398)
T PRK06996 92 HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA-----------------------DGV 148 (398)
T ss_pred CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-----------------------CeE
Confidence 0 01223444556677788888888888876644 566
Q ss_pred EEeecccccCCcceEEeccEEEEecCC
Q 009310 345 ILELQPAIKGLESQIFEADLVLWTVGS 371 (538)
Q Consensus 345 ~~~~~~~~~~~~g~~l~~D~vI~a~G~ 371 (538)
++.+. +++.++++.+|+||-|-|.
T Consensus 149 ~v~~~---~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 149 TLALG---TPQGARTLRARIAVQAEGG 172 (398)
T ss_pred EEEEC---CCCcceEEeeeEEEECCCC
Confidence 66653 1112368999999999995
No 352
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.99 E-value=0.0056 Score=63.53 Aligned_cols=96 Identities=21% Similarity=0.140 Sum_probs=62.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC------------------------------C--------
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG------------------------------T-------- 287 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~------------------------------~-------- 287 (538)
.|+|||+|+.|+-+|..+++.+.+ |+++++.+.+.... +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 389999999999999999866544 89998754321100 0
Q ss_pred -------hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEE
Q 009310 288 -------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (538)
Q Consensus 288 -------~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l 360 (538)
..+.+.+.+.+.+.|++++ ...+..+..++. +.+.+.+. +++++
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~----------------------~~~~v~~~------~g~~~ 128 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV----------------------ALSTVYCA------GGQRI 128 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC----------------------ceeEEEeC------CCCEE
Confidence 1112333444566688776 446666665421 33444432 56789
Q ss_pred eccEEEEecCCCC
Q 009310 361 EADLVLWTVGSKP 373 (538)
Q Consensus 361 ~~D~vI~a~G~~p 373 (538)
.+|.||.|+|..+
T Consensus 129 ~a~~VI~A~G~~s 141 (388)
T TIGR01790 129 QARLVIDARGFGP 141 (388)
T ss_pred EeCEEEECCCCch
Confidence 9999999999876
No 353
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.96 E-value=0.0064 Score=62.84 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=27.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
+|+|||||++|+-+|..|++.+.+ |+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK---TTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe---EEEecCC
Confidence 799999999999999999876655 8888864
No 354
>PLN02697 lycopene epsilon cyclase
Probab=96.96 E-value=0.0061 Score=65.47 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=63.4
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC----------C---------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG----------T--------------------------- 287 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~----------~--------------------------- 287 (538)
-.|+|||+|+.|+-+|..+++.+.+ |.++++...+.... +
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 4899999999999999999876554 88887642221110 0
Q ss_pred ------hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEe
Q 009310 288 ------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (538)
Q Consensus 288 ------~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~ 361 (538)
..+.+.+.+.+.+.|+++ .+..|+++..++ +++.+... .++.++.
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-----------------------~~~~vv~~-----~dG~~i~ 236 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS-----------------------DGLRLVAC-----EDGRVIP 236 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-----------------------CcEEEEEE-----cCCcEEE
Confidence 011233445556678988 566888887543 23222110 1567899
Q ss_pred ccEEEEecCCCC
Q 009310 362 ADLVLWTVGSKP 373 (538)
Q Consensus 362 ~D~vI~a~G~~p 373 (538)
+|.||.|+|...
T Consensus 237 A~lVI~AdG~~S 248 (529)
T PLN02697 237 CRLATVASGAAS 248 (529)
T ss_pred CCEEEECCCcCh
Confidence 999999999876
No 355
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.94 E-value=0.00097 Score=72.40 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
..+||+|||||..|+++|+.|++ +|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~------rG~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCAL------RGLRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHH------cCCeEEEEECCCC
Confidence 34899999999999999999998 7889999999763
No 356
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0021 Score=71.48 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=69.2
Q ss_pred CCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC---------CChhhHHHHHHHHHhCCCEEEcCceeeE
Q 009310 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFVRC 313 (538)
Q Consensus 243 ~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~gV~v~~~~~V~~ 313 (538)
.+++|.|||+|+.|+-.|..|.+.++. |++++|.+++..- ++..+.+.-.+.|.+.||+|++|+.|-.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence 479999999999999999999988877 9999999886431 1334455556789999999999976521
Q ss_pred EeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCC
Q 009310 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (538)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~ 374 (538)
.+.+ |+-.-+.|.||+|+|..-.
T Consensus 1861 -----------------------------~vs~---------d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1861 -----------------------------HVSL---------DELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred -----------------------------cccH---------HHHhhccCeEEEEeCCCCC
Confidence 1111 4445568999999998744
No 357
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.93 E-value=0.00092 Score=70.72 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=31.0
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCC-CEEEEEcCCCCc
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSERF 120 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~~ 120 (538)
||||||||.||++||..+++ .| .+|+|+||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~------~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK------AGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH------cCCccEEEEecCCCC
Confidence 69999999999999999998 67 899999998753
No 358
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.92 E-value=0.0006 Score=69.96 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhC-CCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEE
Q 009310 289 GNREAALKVLSAR-KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367 (538)
Q Consensus 289 ~~~~~~~~~l~~~-gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~ 367 (538)
.+.+.+.+.+++. |+++++++.|+.|+..++ +...+...+...+ +..++.+++|++
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d----------------------g~W~v~~~~~~~~-~~~~v~a~FVfv 238 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD----------------------GRWEVKVKDLKTG-EKREVRAKFVFV 238 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC----------------------CCEEEEEEecCCC-CeEEEECCEEEE
Confidence 4556666677776 999999999999998763 3355554433233 567899999999
Q ss_pred ecCCCCCCCCCCCC
Q 009310 368 TVGSKPLLPHVEPP 381 (538)
Q Consensus 368 a~G~~p~~~~l~~~ 381 (538)
.+|--.- +++...
T Consensus 239 GAGG~aL-~LLqks 251 (488)
T PF06039_consen 239 GAGGGAL-PLLQKS 251 (488)
T ss_pred CCchHhH-HHHHHc
Confidence 9987654 555543
No 359
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.91 E-value=0.00089 Score=71.42 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (538)
+|+|||||.+||++|..|++ .|++|+|+|+++..+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~------~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD------AGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEEecCCCCc
Confidence 58999999999999999998 7889999999987544
No 360
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.90 E-value=0.0029 Score=71.30 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCCCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 242 ~~~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
..+++|+|||+|+.|+.+|..|+..+.+ |++++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccc
Confidence 3579999999999999999999987776 9999974
No 361
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.90 E-value=0.00091 Score=69.33 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=45.8
Q ss_pred CCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCceecC-cccEEE
Q 009310 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN-LGEMMI 467 (538)
Q Consensus 399 d~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~p~~~~~-~g~~~~ 467 (538)
+.+|+++..+++|.+|=.+.. .-...|..||-+|+-|.+..+.|+++..+.... .|.++.
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~---------~GY~Eaaa~Gl~agina~~~~~~~~~~~~~~~~~iG~l~~ 381 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGV---------EGYVASTAGGWLAGINAARLALGEPLLTLPAETMMGALFN 381 (433)
T ss_pred hHHhccCCCCCEEECcccccc---------hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH
Confidence 457888889999999998885 456789999999999999999998754443222 255443
No 362
>PRK10015 oxidoreductase; Provisional
Probab=96.89 E-value=0.009 Score=62.91 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=26.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.|+|||||+.|.-+|..|++.+.+ |.++++.
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~ 37 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLD---VLVIERG 37 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 799999999999999999887655 7777764
No 363
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.88 E-value=0.0087 Score=62.08 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=28.2
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
+|+|||||+.|.-+|..|++.+.+ |+++++.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRS---VAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCC
Confidence 799999999999999999887665 99999754
No 364
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.88 E-value=0.0037 Score=59.89 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=34.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...++|+|||||.-|+.+|++|.++.--....++|+|||+..
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 445899999999999999999998642233448999999876
No 365
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.86 E-value=0.0029 Score=62.96 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
....||+|||||.+|-+.|..|++ .|-+|.+|||+=
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~k------dGRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAK------DGRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhh------CCcEEEEEeccc
Confidence 345799999999999999999999 778999999964
No 366
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.85 E-value=0.001 Score=75.16 Aligned_cols=36 Identities=36% Similarity=0.551 Sum_probs=31.6
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.+|+|||||||||++|..|++.+ +|++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~----~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLD----PAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC----CCCeEEEEecCCC
Confidence 38999999999999999999832 4899999999875
No 367
>PRK07045 putative monooxygenase; Reviewed
Probab=96.85 E-value=0.011 Score=61.52 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=28.5
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.+|+|||||++|+-+|..|++.+.+ |+++++.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS---VTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCc
Confidence 4899999999999999999887655 888876554
No 368
>PRK06126 hypothetical protein; Provisional
Probab=96.83 E-value=0.013 Score=63.94 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=27.4
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
..+|+|||||++|+-+|..|++.+.+ |+++++.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~ 39 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD---SILVERK 39 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCC
Confidence 35899999999999999999987755 7777654
No 369
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.82 E-value=0.012 Score=61.29 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=28.6
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.+|+|||+|+.|+-+|..|++.+.+ |+++++.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCC
Confidence 4899999999999999999887765 88888765
No 370
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.81 E-value=0.013 Score=52.46 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=25.6
Q ss_pred EEECCChhHHHHHHHHHHHH--HhcCcEEEEecC
Q 009310 248 AVVGCGYSGVELAATVSERL--EEKGIVQAINVE 279 (538)
Q Consensus 248 vVVGgG~~g~E~A~~l~~~~--~~~~~Vtlv~~~ 279 (538)
+|||+|++|+-++..|.+.. .....|+++++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 59999999999999999886 333348888873
No 371
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.81 E-value=0.0014 Score=70.02 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...||||||||..|+++|++|++.. ++.+|+|+||++.
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~----~g~~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELE----PEWSITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhC----CCCeEEEEEcCCc
Confidence 3479999999999999999998842 6889999999864
No 372
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.0013 Score=72.17 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=42.9
Q ss_pred CCCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 392 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 392 ~~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
..|.|.||...++ ..|++||+|+|+...+...+.-......|+..|+.++.++...+.+
T Consensus 354 ~~GGi~vd~~~~t-~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~ 412 (589)
T PRK08641 354 SMGGLWVDYDQMT-NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG 412 (589)
T ss_pred eCCCeEECCCCCe-ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3588999988888 8999999999974322111222345667888999999998876543
No 373
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.79 E-value=0.0075 Score=65.16 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=27.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.|+|||||+.|+++|..+++.+.+ |.++++.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~ 36 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAK---TLLLTHN 36 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCc---EEEEecc
Confidence 799999999999999999987766 8888876
No 374
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.79 E-value=0.0097 Score=61.77 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.7
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.+|+|||+|++|+-+|..|++.+.+ |+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 4799999999999999999876654 899988653
No 375
>PRK07538 hypothetical protein; Provisional
Probab=96.77 E-value=0.014 Score=61.15 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=28.0
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
+|+|||||+.|+-+|..|++.+.+ |+++++.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 799999999999999999887655 888887653
No 376
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.76 E-value=0.0018 Score=65.29 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=35.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
...++|+|+|||.+||++|++|+++. +...|+|+|++++.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~----p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLG----PDVTITLFEASPRVG 49 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcC----CCceEEEEecCCccc
Confidence 34579999999999999999999954 677889999999854
No 377
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.76 E-value=0.011 Score=61.75 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=27.9
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.+|+|||||++|+-+|..|++.+.+ |+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLR---IAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCE---EEEEcCC
Confidence 4799999999999999999886655 9999875
No 378
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.75 E-value=0.0027 Score=63.54 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=70.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEEE
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (538)
..++.|.|||+|+-|-..|..|.+.-. +.|.+|.-+=++.+ -.+.+-++.+...--+.+++.||.++.
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r--~~g~eV~QvF~Ek~----------nm~kiLPeyls~wt~ekir~~GV~V~p 412 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYR--NEGVEVHQVFEEKY----------NMEKILPEYLSQWTIEKIRKGGVDVRP 412 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhh--ccCcEEEEeecccC----------ChhhhhHHHHHHHHHHHHHhcCceecc
Confidence 345789999999999999999987542 35666654433322 112222333333333455677888876
Q ss_pred e-eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 157 ~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
. .|.++..... +-.+.+.+|.+++.|.+|+|+|..|+..
T Consensus 413 na~v~sv~~~~~-----------nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 413 NAKVESVRKCCK-----------NLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred chhhhhhhhhcc-----------ceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 4 5655543322 1257889999999999999999998753
No 379
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.75 E-value=0.013 Score=60.89 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=27.7
Q ss_pred CeEEEECCChhHHHHHHHHHHH---HHhcCcEEEEecC
Q 009310 245 IRVAVVGCGYSGVELAATVSER---LEEKGIVQAINVE 279 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~---~~~~~~Vtlv~~~ 279 (538)
.+|+|||+|+.|.-+|..|++. +.+ |+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~---v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLP---VALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCE---EEEEeCC
Confidence 4799999999999999999886 555 8999884
No 380
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.73 E-value=0.0017 Score=70.72 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...||||||+|.|||+||..+++ .|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~------~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD------AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 45799999999999999999998 688999999987
No 381
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.72 E-value=0.0018 Score=71.37 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
..+||||||||..|.++|+.|++ +|++|+|||+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~------rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT------RGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh------CCCEEEEEecccc
Confidence 34899999999999999999999 7889999999864
No 382
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0017 Score=66.15 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=36.2
Q ss_pred CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 009310 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 454 (538)
Q Consensus 400 ~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~ 454 (538)
.+|+|+..+++|.+|-.... .-...|..||-+++-|......+++.
T Consensus 381 ~sLeTkkV~GLF~AGQINGT---------TGYEEAAAQGIiAGiNA~~~a~~~~~ 426 (679)
T KOG2311|consen 381 PSLETKKVQGLFFAGQINGT---------TGYEEAAAQGIIAGINASLRASGKPP 426 (679)
T ss_pred hhhhhhhccceEEeeeecCc---------cchHHHHhhhhHhhhhhhhhhcCCCC
Confidence 46777788999999998874 34567889999999998876666653
No 383
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.68 E-value=0.0017 Score=70.05 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=31.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
..||||||+| |||+||.++++ .|.+|+||||.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~------~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR------EGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH------CCCcEEEEecCCC
Confidence 5799999999 99999999998 7889999999764
No 384
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.68 E-value=0.011 Score=62.02 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=29.0
Q ss_pred eEEEECCChhHHHHHHHHHHHHH-hcCcEEEEecCCcc
Q 009310 246 RVAVVGCGYSGVELAATVSERLE-EKGIVQAINVETTI 282 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~-~~~~Vtlv~~~~~~ 282 (538)
+|+|||||+.|+-+|..|++.+. + |+++++.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCcC
Confidence 79999999999999999987653 4 9999987654
No 385
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.68 E-value=0.011 Score=61.10 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=62.7
Q ss_pred EEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc--CCCC-----C--------------------------------
Q 009310 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI--CPTG-----T-------------------------------- 287 (538)
Q Consensus 247 VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~--l~~~-----~-------------------------------- 287 (538)
|+|||+|++|.-+|..|.+.... ..|.+|++.... ..+. .
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g-~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPG-LSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCC-CEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 89999999999999999433222 238999876544 1110 0
Q ss_pred ------hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEe
Q 009310 288 ------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (538)
Q Consensus 288 ------~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~ 361 (538)
..+.+.+.+.+++.| .+..+..|++|+.++ ..+.+.+. +|+++.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~-----------------------~~~~v~~~------~g~~i~ 130 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETG-----------------------DGVLVVLA------DGRTIR 130 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecC-----------------------ceEEEEEC------CCCEEE
Confidence 112233344455334 566778888888765 33333332 778999
Q ss_pred ccEEEEecCCCCC
Q 009310 362 ADLVLWTVGSKPL 374 (538)
Q Consensus 362 ~D~vI~a~G~~p~ 374 (538)
++.||-|.|..+.
T Consensus 131 a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 131 ARVVVDARGPSSP 143 (374)
T ss_pred eeEEEECCCcccc
Confidence 9999999996544
No 386
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.67 E-value=0.0018 Score=64.60 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=29.9
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
+|+||||+|+||..+|.+|++. .+.+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~-----~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA-----GNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS-----TTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhC-----CCCcEEEEEccccCc
Confidence 5899999999999999999982 347999999987643
No 387
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.67 E-value=0.0018 Score=71.02 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...||||||||.|||.||..+++ .|.+|+||||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLAR------AGLSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHH------CCCcEEEEeccC
Confidence 34799999999999999999988 678999999974
No 388
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.62 E-value=0.0017 Score=71.60 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
-|.|.||...+.+..|++||+|+|+...+...+.-......|+-.|+.++.+++..+.+
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~ 449 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRG 449 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 47899997765448999999999975432212222345677889999999998876643
No 389
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.62 E-value=0.0039 Score=64.70 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=30.6
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l 283 (538)
+|+|||||.+|+|+|..|++.+.+ |+++++.+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc
Confidence 799999999999999999988776 99999866543
No 390
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.61 E-value=0.0018 Score=70.73 Aligned_cols=58 Identities=17% Similarity=0.033 Sum_probs=41.8
Q ss_pred CCCCeeeCCCcc----cCCCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 392 ARGQAETDETLC----VKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 392 ~~G~i~vd~~l~----~~~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
-.|.|.||...| + ..|++||+|+|+.. .+...+.-......|+..|+.++.++...+.
T Consensus 341 t~GGi~id~~~~v~~~t-~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 341 SMGGIPTDYTGRVICET-IVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cCCCeEECcCcccccCc-ccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 357788998888 6 79999999999752 1111111234567789999999999987654
No 391
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.61 E-value=0.036 Score=56.26 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=66.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC--CCCC---------hhhHHHHHHHHHhC--CCEEEcCce
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC--PTGT---------PGNREAALKVLSAR--KVQLVLGYF 310 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l--~~~~---------~~~~~~~~~~l~~~--gV~v~~~~~ 310 (538)
.++|+|+|+|..|+-++..|.....+ |++|.+...++ |.++ ..+.+-+....++. +++++.. .
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-e 130 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-E 130 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-c
Confidence 57999999999999999888665555 99999877653 1221 23344455555444 4555443 3
Q ss_pred eeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCC
Q 009310 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (538)
Q Consensus 311 V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~ 375 (538)
-..|+.+. +.|..+...++.......+.+|.+|+|+|..|++
T Consensus 131 c~~iDp~~-----------------------k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 131 CTKIDPDN-----------------------KKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred cEeecccc-----------------------cEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 34555543 4454443222222234678999999999999995
No 392
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.60 E-value=0.0021 Score=70.16 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=42.8
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.|.||...|+++.|++||+|+|+.. .+...+.-......++-.|+.++.++...+.+
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999988887459999999999752 22111222345677899999999999877643
No 393
>PRK12839 hypothetical protein; Provisional
Probab=96.60 E-value=0.0029 Score=69.00 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=34.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
.....||||||+|.+|++||..+++ .|.+|+|||+.....
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~------~g~~v~~iek~~~~g 44 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAY------GGAKVLVVEKASTCG 44 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCC
Confidence 3456899999999999999999998 678999999987543
No 394
>PLN03000 amine oxidase
Probab=96.60 E-value=0.0027 Score=70.98 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=36.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p 124 (538)
...++|+|||||++||.||..|.+ .|++|+|+|++++.+...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~------~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMR------FGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHH------CCCcEEEEEccCcCCCCc
Confidence 345899999999999999999998 678999999998855443
No 395
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.58 E-value=0.002 Score=70.80 Aligned_cols=45 Identities=18% Similarity=0.056 Sum_probs=36.5
Q ss_pred CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 400 ~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.+++| +.|++||+|||+... ....+..+..+|++++.++...+..
T Consensus 389 ~~~~T-~v~glyA~Ge~~~~~------~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 YNRMT-TVEGLFAAGDVVGGS------PHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccc-CCCCEEEeeecCCCC------cchhHHHHHHHHHHHHHHHHHHHHh
Confidence 88998 899999999998531 1356778889999999999887654
No 396
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.58 E-value=0.023 Score=59.08 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=26.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.|+|||+|++|.-+|..|++.+.+ |.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 599999999999999999887655 8888875
No 397
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.57 E-value=0.026 Score=58.90 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=27.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
+|+|||+|+.|.-+|..+++.+.+ |.++++..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ---TFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 799999999999999999987765 88888753
No 398
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.56 E-value=0.0031 Score=69.72 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=36.4
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHH
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 444 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~ 444 (538)
.|.|.||...+| +.|++||+|+|+...+...+.-......+.-.|+.++.+
T Consensus 406 ~GGi~vd~~~~T-~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 406 MGGLWVDYNLMS-TIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred cCCEEECCCCcc-ccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 388999999998 899999999997543221122234456677788888766
No 399
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.019 Score=60.15 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=84.2
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC-------------------------------CCC-----
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-------------------------------TGT----- 287 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~-------------------------------~~~----- 287 (538)
.++|+|||+|++|+-.|..|.+.+.+ ++++++.+.+.. +++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 57999999999999999999988766 777777543321 000
Q ss_pred -------hhhHHHHHHHHHhCCC--EEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCc-c
Q 009310 288 -------PGNREAALKVLSARKV--QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE-S 357 (538)
Q Consensus 288 -------~~~~~~~~~~l~~~gV--~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-g 357 (538)
.++.+++....+..++ .+..++.|.+++...+ +...+... .... .
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~----------------------gkW~V~~~---~~~~~~ 137 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK----------------------GKWRVTTK---DNGTQI 137 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC----------------------CceeEEEe---cCCcce
Confidence 1334556666666665 5777887777776431 12233222 1112 2
Q ss_pred eEEeccEEEEecCCC--CCCCCCCCCCCccCCCCc-CCCCCeeeCCCcccC---CCCCEEEcccccc
Q 009310 358 QIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPL-NARGQAETDETLCVK---GHPRIFALGDSSA 418 (538)
Q Consensus 358 ~~l~~D~vI~a~G~~--p~~~~l~~~~~~~~~~~l-~~~G~i~vd~~l~~~---~~~~VfaiGD~~~ 418 (538)
++.-+|.|++|+|.- |+.|.... ... .-.|.+.--..++.. ....|.++|-..+
T Consensus 138 ~~~ifd~VvVctGh~~~P~~P~~~g-------~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 138 EEEIFDAVVVCTGHYVEPRIPQIPG-------PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred eEEEeeEEEEcccCcCCCCCCcCCC-------CchhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 567799999999997 66554432 111 123444433333321 1356888885555
No 400
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.54 E-value=0.0023 Score=70.47 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...||||||||.|||.||..+++ .|.+|+|+||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVE------LGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCcEEEEeccCC
Confidence 35799999999999999999998 6789999999864
No 401
>PRK08275 putative oxidoreductase; Provisional
Probab=96.54 E-value=0.0025 Score=69.47 Aligned_cols=51 Identities=22% Similarity=0.181 Sum_probs=40.9
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.|.||..++| +.|++||+|||+... ......|.-.|+.++.++...+.+
T Consensus 356 ~Ggi~~d~~~~t-~i~gl~a~Ge~~~~~-------~~~~~~~~~~G~~a~~~~~~~~~~ 406 (554)
T PRK08275 356 ASGVWVNEKAET-TVPGLYAAGDMASVP-------HNYMLGAFTYGWFAGENAAEYVAG 406 (554)
T ss_pred cCcEEECCCCcc-CCCCEEECcccCCch-------hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367999999998 999999999997531 245566888999999998877654
No 402
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.53 E-value=0.0023 Score=70.23 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...||||||||.|||+||..+++ .|.+|+|+||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~------~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE------AGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccC
Confidence 34799999999999999999998 678999999975
No 403
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.52 E-value=0.017 Score=61.17 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=26.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
+|+|||||..|.-+|..|++.++..-.|++|+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 5999999999999999999988654449998863
No 404
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.50 E-value=0.0027 Score=69.44 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...||||||+|.|||+||+.+++ .|.+|+|+||.+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae------~G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAA------RGLDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHH------CCCcEEEEEcCCC
Confidence 35799999999999999999998 6889999999874
No 405
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.47 E-value=0.0026 Score=70.11 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...||||||+|.|||.||..+++ .|.+|+||||...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae------~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSE------HGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHh------cCCcEEEEEcCCC
Confidence 34799999999999999999988 6789999999763
No 406
>PRK11445 putative oxidoreductase; Provisional
Probab=96.47 E-value=0.031 Score=57.16 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=26.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||+|+.|.-+|..|++. .+ |+++++.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK---VIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC---EEEEECCC
Confidence 799999999999999999875 43 99999765
No 407
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.47 E-value=0.004 Score=60.68 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
++|++|||+|.+|+..|..|++ .|.+|.|||++++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~------~gk~VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ------LGKRVLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH------cCCEEEEEeccccC
Confidence 3689999999999999998887 57799999999984
No 408
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.47 E-value=0.0029 Score=69.29 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
..||||||+|.|||+||..+++ .|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQ------SGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccCC
Confidence 4799999999999999999988 6789999999753
No 409
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.47 E-value=0.0043 Score=67.50 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=35.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCc
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p 124 (538)
.....||||||+| +|++||..+++ .|.+|+||||.+.+....
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~------~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHE------LGLSVLIVEKSSYVGGST 54 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHH------CCCcEEEEecCCCCcCcc
Confidence 3446899999999 89999999998 788999999987655443
No 410
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.45 E-value=0.0028 Score=69.33 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=33.7
Q ss_pred CCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 400 ~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
...+| +.|++||+|||+.. ..-..+.++..+|.+++.++...+..
T Consensus 400 ~~~~T-~i~gLyA~Ge~~~~------~~h~l~~nsl~eg~~ag~~a~~~~~~ 444 (614)
T TIGR02061 400 YNRMT-TVEGLFTCGDGVGA------SPHKFSSGSFTEGRIAAKAAVRWILD 444 (614)
T ss_pred cCCcc-ccCCEEeceecccC------cchhhHHhHHHHHHHHHHHHHHHHHh
Confidence 44556 89999999999763 11246677888899999998877654
No 411
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.45 E-value=0.0027 Score=69.54 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=41.6
Q ss_pred CCCeeeCCCcccCC------CCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKG------HPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~------~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.|.||...|+ . .|++||+|+|+.. .+...+.-......|+-.|+.++.+++..+..
T Consensus 352 ~GGi~vd~~~~t-~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~ 416 (577)
T PRK06069 352 MGGIHTDVYGRV-LTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALK 416 (577)
T ss_pred CCCceECCCCcC-cCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 578899999998 5 8999999999852 11111111244567889999999998876543
No 412
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.44 E-value=0.029 Score=57.91 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=26.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||||.+|+-+|..|++.+.+ |+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~---V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKK---TLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence 589999999999999999887654 88888743
No 413
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.42 E-value=0.002 Score=67.76 Aligned_cols=98 Identities=22% Similarity=0.191 Sum_probs=26.5
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCC----------------------------------------
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------------------------------------- 285 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~---------------------------------------- 285 (538)
.|+|||||+.|+-.|..+++.+.+ |.||++.+.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 389999999999999999998876 9999986544211
Q ss_pred ---------CCh-hhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCC
Q 009310 286 ---------GTP-GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (538)
Q Consensus 286 ---------~~~-~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 355 (538)
+++ .....+.+.+++.||++++++.|.++..+++.. .+|++... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i--------------------~~V~~~~~-----~ 132 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRI--------------------TGVIVETK-----S 132 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc--------------------cccccccc-----c
Confidence 000 011123455677899999999999888765322 45555421 1
Q ss_pred cceEEeccEEEEecCC
Q 009310 356 ESQIFEADLVLWTVGS 371 (538)
Q Consensus 356 ~g~~l~~D~vI~a~G~ 371 (538)
...++.++.+|-|+|.
T Consensus 133 g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 133 GRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 3678999999999994
No 414
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.38 E-value=0.0036 Score=68.13 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 79 ~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
..||||||+|.||++||..+++ .|.+|+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~------~G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAAD------SGLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCC
Confidence 5799999999999999999998 6789999999864
No 415
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.36 E-value=0.011 Score=55.48 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
..++|+|||||..|...+..|.+ .|.+|+||+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~------~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK------AGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH------CCCEEEEEcCCC
Confidence 34799999999999999999998 688999999864
No 416
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.35 E-value=0.0033 Score=69.62 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=42.2
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
-|.|.||...++...|++||+|+|+.. .....+.-......++-.|+.++.+++..+.+
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 477999999998459999999999752 11111112345567888999999998877644
No 417
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.35 E-value=0.0083 Score=58.23 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=33.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...+|+||||||..|++.|+.|.- ++++.+|.|+|++.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~l----rhp~l~V~vleke~ 83 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSL----RHPSLKVAVLEKEK 83 (453)
T ss_pred cccccEEEECCceeehhhhHHHhh----cCCCceEEeeehhh
Confidence 456999999999999999999865 34799999999976
No 418
>PLN02815 L-aspartate oxidase
Probab=96.34 E-value=0.0052 Score=67.15 Aligned_cols=56 Identities=14% Similarity=-0.006 Sum_probs=40.9
Q ss_pred CCCeeeCCCcccCCCCCEEEcccccc-ccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~-~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
-|.|.||...|+ ..|++||+|+|+. ......+.-......++-.|+.++.++...+
T Consensus 377 ~GGi~vD~~~~t-~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 377 CGGVRTGLQGET-NVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCCeeECCCCce-ecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 578999999998 8999999999974 2221112223456778888999999887654
No 419
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.27 E-value=0.031 Score=59.08 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=25.6
Q ss_pred eEEEECCChhHHHHHHHHHH----HHHhcCcEEEEec
Q 009310 246 RVAVVGCGYSGVELAATVSE----RLEEKGIVQAINV 278 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~----~~~~~~~Vtlv~~ 278 (538)
.|+|||||++|+-+|..|++ .+.+ |+++++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~---v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLK---VLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCe---EEEEeC
Confidence 59999999999999999986 3444 888887
No 420
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.27 E-value=0.03 Score=60.60 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.7
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.|+|||+|+.|+++|..++..+.+ |.++++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~---v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAK---TLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC---EEEEecc
Confidence 589999999999999999887665 8888764
No 421
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.24 E-value=0.015 Score=56.65 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=28.7
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.|||||+|.|||+|+..+.. .+-.|+|+|+..
T Consensus 11 pvvVIGgGLAGLsasn~iin------~gg~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN------KGGIVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHh------cCCeEEEEeccC
Confidence 69999999999999999987 455799999976
No 422
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.22 E-value=0.094 Score=48.82 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=63.5
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC-------C------------------------------
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------T------------------------------ 287 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~-------~------------------------------ 287 (538)
..|+|||+|++|+-+|.+|++.+.+ |.++++...+.... +
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d 94 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVAD 94 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-
T ss_pred CCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEc
Confidence 4799999999999999999998666 99999865443211 0
Q ss_pred -hhhHHHHHHHHHhCCCEEEcCceeeEEeccc-cccccccCCCCCcccccccccCCCceEEeeccccc---CCcceEEec
Q 009310 288 -PGNREAALKVLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIK---GLESQIFEA 362 (538)
Q Consensus 288 -~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~g~~l~~ 362 (538)
.+....+....-+.|+++.....|+.+--.+ ... .++.+...+-+. --|.-.+++
T Consensus 95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV--------------------~GvViNWt~V~~~glHvDPl~i~a 154 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRV--------------------AGVVINWTPVEMAGLHVDPLTIRA 154 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEE--------------------EEEEEEEHHHHTT--T-B-EEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeE--------------------EEEEEEehHHhHhhcCCCcceEEE
Confidence 1111222333345899999999998875433 111 345544322111 125568999
Q ss_pred cEEEEecCCCCC
Q 009310 363 DLVLWTVGSKPL 374 (538)
Q Consensus 363 D~vI~a~G~~p~ 374 (538)
..||-+||....
T Consensus 155 k~ViDaTGHda~ 166 (230)
T PF01946_consen 155 KVVIDATGHDAE 166 (230)
T ss_dssp SEEEE---SSSS
T ss_pred eEEEeCCCCchH
Confidence 999999998765
No 423
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.22 E-value=0.0059 Score=66.24 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=41.9
Q ss_pred CCCeeeCCCcccCCCCCEEEcccccc-ccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~-~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
.|.|.||...|+ ..|++||+|+|+. ......+.-......|.-.|+.+++++.....
T Consensus 353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 353 CGGVMVDLHGRT-DLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred cCCeeECCCCcc-ccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 577999999998 8999999999974 22211122234566788999999999987653
No 424
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.20 E-value=0.0076 Score=61.26 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
....++|+|||||.++.+.+..|.+.+ +..+|+++-++..
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~----~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRG----PEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCC----CCcEEEEEECCCc
Confidence 345689999999999999999998843 3469999999874
No 425
>PLN02976 amine oxidase
Probab=96.20 E-value=0.0057 Score=71.15 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (538)
...++|+|||||++|+++|..|.+ .|++|+|||+++..+.
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~------~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQR------QGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHH------CCCcEEEEeeccCCCC
Confidence 345899999999999999999998 6889999999887443
No 426
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.045 Score=56.68 Aligned_cols=38 Identities=24% Similarity=0.535 Sum_probs=30.9
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
.+|+|||+|++|+.+|.+|.+.......|+++++.+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 48999999999999999998876555458888876544
No 427
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.15 E-value=0.05 Score=56.09 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||||.+|+-+|.+|++.+.+ |+++++..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~---V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLR---VLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCe---EEEEeccc
Confidence 699999999999999999988654 99998753
No 428
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.14 E-value=0.0053 Score=66.71 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccc-cCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWA 447 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~-~~~~~~~~~~~~~~A~~qg~~aa~~i~~ 447 (538)
-|.|.||...|+ ..|++||+|+|+.. .+...+.-......++--|+.++.++..
T Consensus 347 ~GGi~vd~~~~t-~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 347 MGGVVTDLNNQT-SIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred CCCeeECCCCcc-cCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 477999999998 89999999999742 1111111123445667778888887754
No 429
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.13 E-value=0.031 Score=62.40 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.1
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.+|+|||||.+|+-+|..|++.+.+ |+++++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~---V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQ---VTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCe---EEEEecCC
Confidence 3799999999999999999988765 99999864
No 430
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.01 Score=63.04 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=31.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
..++|+|+|+|..|+++|..|++ .|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~------~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK------LGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence 35899999999999999999998 788999999875
No 431
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.10 E-value=0.013 Score=60.18 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=55.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCC-------Chh------hHHHHHHHHHhCCCEEEcCce
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------TPG------NREAALKVLSARKVQLVLGYF 310 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~-------~~~------~~~~~~~~l~~~gV~v~~~~~ 310 (538)
.++++|||||.+|++.|.+|++.|-+ |.+|+..+.+...+ +.. +...+.+.-..-+|++++.++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~---v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae 200 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFK---VYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE 200 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCe---EEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence 57999999999999999999998887 99999988765431 111 122233444456899999999
Q ss_pred eeEEeccc
Q 009310 311 VRCIRRVG 318 (538)
Q Consensus 311 V~~i~~~~ 318 (538)
|+++.+.-
T Consensus 201 V~ev~G~v 208 (622)
T COG1148 201 VEEVSGSV 208 (622)
T ss_pred eeeecccc
Confidence 99998853
No 432
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.10 E-value=0.0044 Score=68.02 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=40.4
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
.|.|.+|...++ +.|++||+|+|+...+...+.-......+.-.|+.++.+++..+
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999998 89999999999753221111112455678888999999987654
No 433
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.09 E-value=0.0098 Score=65.12 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCccc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (538)
...||||||+|.+|++||..+++ .|++|+|||+.+....
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAI------AGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCC
Confidence 35799999999999999999998 6889999999875443
No 434
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.08 E-value=0.064 Score=55.75 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.9
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~ 281 (538)
.+|+|||+|+.|+-+|..|++.+.+ |+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 4899999999999999999887766 999998764
No 435
>PRK02106 choline dehydrogenase; Validated
Probab=96.07 E-value=0.0075 Score=65.89 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
..+|+||||||.||+.+|.+|++ ++|++|+|||+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae-----~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSE-----DPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHh-----CCCCeEEEecCCCc
Confidence 34899999999999999999998 26899999999864
No 436
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.06 E-value=0.07 Score=56.48 Aligned_cols=33 Identities=33% Similarity=0.355 Sum_probs=28.2
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
-.|+|||||+.|.-+|..|++.+.+ |.++++..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE---TFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 3899999999999999999887665 88888753
No 437
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.05 E-value=0.0066 Score=65.17 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=32.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
+||+|||+||+|+.+|..|++ .|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~------~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD------AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH------CCCeEEEEeccCccC
Confidence 589999999999999999998 678999999988754
No 438
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.05 E-value=0.0061 Score=66.82 Aligned_cols=58 Identities=16% Similarity=0.008 Sum_probs=39.6
Q ss_pred CCCeeeCCCccc-----CCCCCEEEcccccc-ccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 393 RGQAETDETLCV-----KGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 393 ~G~i~vd~~l~~-----~~~~~VfaiGD~~~-~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
.|.|.+|...|+ +..|++||+|+|+. ......+.-......++-.|+.++.+++....
T Consensus 356 ~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 356 MGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 466777766664 36899999999975 21111122234566788899999999887654
No 439
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.05 E-value=0.0073 Score=71.37 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=34.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
+...||||||+|.||++||..+++ .|.+|+|+||.+...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae------~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAAS------CGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEEccCCCC
Confidence 445899999999999999999998 688999999987543
No 440
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.02 E-value=0.065 Score=59.33 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=25.9
Q ss_pred CeEEEECCChhHHHHHHHHHHH-HHhcCcEEEEecC
Q 009310 245 IRVAVVGCGYSGVELAATVSER-LEEKGIVQAINVE 279 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~-~~~~~~Vtlv~~~ 279 (538)
..|+|||+|++|+-+|..|+++ +-+ |.++++.
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~ 65 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERK 65 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcC
Confidence 4899999999999999999884 544 6666654
No 441
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.00 E-value=0.0084 Score=63.50 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcc
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (538)
+..||+|||||..|+.+|+.++. +|++|+|+|+++.-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~------RGl~v~LvE~~D~As 48 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG------RGLKVALVEKGDLAS 48 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh------CCCeEEEEecCcccC
Confidence 67999999999999999999998 899999999998643
No 442
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.97 E-value=0.065 Score=57.75 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.0
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||+|..|+-.|..+++.+.+ |.++++.+
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga~---VivlEK~~ 94 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGMN---PVILEKMP 94 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC---EEEEECCC
Confidence 799999999999999999887665 88888654
No 443
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.94 E-value=0.074 Score=57.84 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.5
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
-.|+|||||.+|+-+|.+|+.++.+ |+++++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~---V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLR---CILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCe---EEEEECC
Confidence 3799999999999999999987765 8888864
No 444
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.93 E-value=0.0072 Score=69.64 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=41.7
Q ss_pred CCCeeeCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~ 451 (538)
.|.|.||...+| +.|++||+|||+... ......+.-.|+.++.++...+.+
T Consensus 361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~-------~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 361 ASGVWVDEHART-TVPGLYAAGDLACVP-------HNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred cceEEecCCCcc-cCCCeEechhccCcc-------hhhhhhHHHhHHHHHHHHHHHHhc
Confidence 488999999998 899999999998641 355667889999999998876543
No 445
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.90 E-value=0.0082 Score=64.85 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=42.0
Q ss_pred CCCeeeCC-CcccCCCCCEEEccccccccCCCC-CCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 009310 393 RGQAETDE-TLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWNLWAAINDRPLL 455 (538)
Q Consensus 393 ~G~i~vd~-~l~~~~~~~VfaiGD~~~~~~~~~-~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~ 455 (538)
.|.|.+|. ...+ ..|++||+|+|+......+ +.-......+...|+.++.+....+......
T Consensus 355 mGGi~~~~~~~~t-~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~ 418 (562)
T COG1053 355 MGGIPTNTGRVET-KIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGS 418 (562)
T ss_pred cCCEeeccccccc-CCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46788884 4444 5899999999997543211 1113456677888999998888877655433
No 446
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.84 E-value=0.0027 Score=57.91 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=32.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
.||||||+|.|||+||+.+.+ +++..+|.|||.+-.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~----~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAK----NRPDLKVAIIESSVA 112 (328)
T ss_pred cceEEECCCccccceeeeeec----cCCCceEEEEEeeec
Confidence 599999999999999999987 458999999998754
No 447
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.56 E-value=0.015 Score=56.54 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=63.6
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc--CCCC---ChhhHHHHH-----HHHHhCCCEEEcCceeeEE
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI--CPTG---TPGNREAAL-----KVLSARKVQLVLGYFVRCI 314 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~--l~~~---~~~~~~~~~-----~~l~~~gV~v~~~~~V~~i 314 (538)
-+|+|||||.-|+-+|..+.+..... .|.++++.+.- .|.+ +..+..... ..|--.|.+++. ..|+++
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f 117 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEF 117 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCC-ceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHhc
Confidence 48999999999999999998876643 38888876532 2222 111111100 011112222222 345555
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~~ 380 (538)
.++. +.|.++ +|++|.+|.+|+|+|..-+.+.++.
T Consensus 118 ~P~~-----------------------N~v~t~--------gg~eIsYdylviA~Giql~y~~IkG 152 (446)
T KOG3851|consen 118 NPDK-----------------------NTVVTR--------GGEEISYDYLVIAMGIQLDYGKIKG 152 (446)
T ss_pred CCCc-----------------------CeEEcc--------CCcEEeeeeEeeeeeceeccchhcC
Confidence 5543 455554 8899999999999999887665543
No 448
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.52 E-value=0.096 Score=57.67 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
..+|+|||||+.|+-+|..|++.+.+ |+++++.+
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 57999999999999999999997766 99999865
No 449
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.44 E-value=0.022 Score=55.69 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...+|+|||+|.|||-||..|+. +|.+|+|+|++..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~------aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD------AGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh------cCceEEEEccccc
Confidence 34799999999999999999998 7889999999763
No 450
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.035 Score=54.70 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEE------EE-----ecCCccCCCCChhhHHHHHHHHHhCCCEEEcCceee
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQ------AI-----NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vt------lv-----~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~V~ 312 (538)
+-.|+|||||+.|...|-+.++.+-+.+.+. ++ +.--.....-.+++...+++..++..|.++...+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 5689999999999999988887765533110 00 000111123357888899999999999999877777
Q ss_pred EEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCC
Q 009310 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372 (538)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~ 372 (538)
.+.+..... +-..+++. +|-.+++.++|+++|.+
T Consensus 291 ~l~~a~~~~--------------------~l~ev~l~------nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEG--------------------GLIEVELA------NGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCC--------------------ccEEEEec------CCceeccceEEEecCcc
Confidence 776632110 34445543 88899999999999986
No 451
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.043 Score=53.09 Aligned_cols=41 Identities=32% Similarity=0.401 Sum_probs=30.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccC-CCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQ-DDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~-~~~g~~V~lie~~~ 118 (538)
+..+|+|||+|.-||+.|..+.++... .-+-.+|++++.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 347999999999999999777663210 12557999998765
No 452
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.1 Score=48.38 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=66.3
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec----------------CCccCCCC-----ChhhHHHHHHHHHhCCC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINV----------------ETTICPTG-----TPGNREAALKVLSARKV 303 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~----------------~~~~l~~~-----~~~~~~~~~~~l~~~gV 303 (538)
.+|+|||+|+.+.-.|.++++.--+ -.+++. .-.-+|.+ .+++.+.+++.-++.|-
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 4899999999999999888764211 111111 01113333 46778888888899999
Q ss_pred EEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCCCCCC
Q 009310 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379 (538)
Q Consensus 304 ~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~~~l~ 379 (538)
++++. .|..++-.. .-+.+- ++.+.+.+|.||+++|.....-.+.
T Consensus 86 ~i~tE-tVskv~~ss-----------------------kpF~l~-------td~~~v~~~avI~atGAsAkRl~~p 130 (322)
T KOG0404|consen 86 EIITE-TVSKVDLSS-----------------------KPFKLW-------TDARPVTADAVILATGASAKRLHLP 130 (322)
T ss_pred eeeee-ehhhccccC-----------------------CCeEEE-------ecCCceeeeeEEEecccceeeeecC
Confidence 99876 355555433 333333 2667899999999999987643443
No 453
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.40 E-value=0.016 Score=62.57 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=41.1
Q ss_pred CCCeeeCCCcccCCCCCEEEcccccc-ccCCCCCCCCccHHHHHHHHHHHHHHHHHHHC
Q 009310 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (538)
Q Consensus 393 ~G~i~vd~~l~~~~~~~VfaiGD~~~-~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~ 450 (538)
.|.|.||...++ ..|++||+|+|+. ......+.-......++..|+.++.++.....
T Consensus 341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 341 MGGIAVDADGRS-SLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred cCCEEECCCCcc-ccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999997 8999999999974 21111122234556778899999999887643
No 454
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.37 E-value=0.022 Score=53.98 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=58.7
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCce-----------eeEE
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF-----------VRCI 314 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~-----------V~~i 314 (538)
+.+|||||..|+.+|..|+.+.+... |.+++.++.+-. -..-..+-+.|++..|+=...+. |..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~-illitass~vks---vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~ 76 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAE-ILLITASSFVKS---VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTW 76 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCc-EEEEeccHHHHH---HhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhh
Confidence 36899999999999999998876653 777776554311 11123344555555544211100 1222
Q ss_pred eccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCCCCC
Q 009310 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p~~ 375 (538)
+... +-+.++ +|.++.++.+.+|+|++|-.
T Consensus 77 ~s~e-----------------------hci~t~--------~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 77 DSSE-----------------------HCIHTQ--------NGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cccc-----------------------ceEEec--------CCceeeEEEEEEecCCCcce
Confidence 2111 233333 88999999999999999973
No 455
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.36 E-value=0.13 Score=55.58 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=27.4
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
-.|+|||||.+|+-+|.+++.++.+ |.++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~---V~LvEk~ 38 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLS---VLLCEQD 38 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCe---EEEEecC
Confidence 4799999999999999999987765 7777764
No 456
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.17 E-value=0.019 Score=62.24 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=29.8
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCC-CEEEEEcCCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~ 119 (538)
|+||||||.||+.+|.+|++ .+ ++|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~------~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE------DVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhcc------CCCCeEEEEecCCC
Confidence 68999999999999999998 44 79999999864
No 457
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.15 E-value=0.16 Score=52.24 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=26.7
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.|+|||+|.+|+-+|.+|++.+.+ |+++++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~---V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLS---VTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence 589999999999999999887654 8888874
No 458
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.15 E-value=0.024 Score=61.50 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...+|+||||+|.||..+|..|.+ ++++|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~------~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD------AGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC------CCCeEEEEeCCCC
Confidence 456899999999999999999996 8999999999864
No 459
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.11 E-value=0.19 Score=53.09 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=23.6
Q ss_pred EEEECCChhHHHHHHHHHHHH-HhcCcEEEEecC
Q 009310 247 VAVVGCGYSGVELAATVSERL-EEKGIVQAINVE 279 (538)
Q Consensus 247 VvVVGgG~~g~E~A~~l~~~~-~~~~~Vtlv~~~ 279 (538)
|+|||+|..|+-.|..+++.+ .+ |.++++.
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~ 32 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAAN---VVLLEKM 32 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcc---EEEEecC
Confidence 788999999998888888776 44 7777754
No 460
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.00 E-value=0.032 Score=46.04 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
+.++|+|||||..|..-+..|.+ .|.+|+||.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~------~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE------AGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC------CTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh------CCCEEEEECCch
Confidence 45899999999999999999988 678999998874
No 461
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.99 E-value=0.24 Score=52.79 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.6
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||+|..|+-.|..+++.+.+ |.++++.+
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~---V~vlEk~~ 37 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGAS---VLLLEAAP 37 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 799999999999999999887665 88888754
No 462
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.91 E-value=0.24 Score=52.74 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=24.9
Q ss_pred eEEEECCChhHHHHHHHHHHH--HHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSER--LEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~--~~~~~~Vtlv~~~ 279 (538)
.|+|||+|.+|+-+|.+|++. +.+ |+++++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~---V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALD---VLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCe---EEEEeCC
Confidence 799999999999999999886 334 7888763
No 463
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.90 E-value=0.044 Score=57.44 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.2
Q ss_pred eEEEECCChhHHHHHHHHHHHHHh
Q 009310 246 RVAVVGCGYSGVELAATVSERLEE 269 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~ 269 (538)
.|+|||||..|+|.|...++.+.+
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~k 29 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAK 29 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCe
Confidence 799999999999999999988865
No 464
>PRK07121 hypothetical protein; Validated
Probab=94.88 E-value=0.24 Score=53.28 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=26.6
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||+|..|+-.|..+++.+.+ |.+++...
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~~---VillEK~~ 53 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGAR---VLVLERAA 53 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 799999999999999999887655 77777643
No 465
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.81 E-value=0.04 Score=49.30 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=29.9
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
||.|||||..|.++|..|++ .|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~------~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD------NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH------CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH------cCCEEEEEeccH
Confidence 69999999999999999999 789999999975
No 466
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.76 E-value=0.3 Score=52.56 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.0
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
-.|+|||||.+|+-+|.+++.++.+ |.++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLK---VLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 3799999999999999999987654 7777764
No 467
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.56 E-value=0.061 Score=48.10 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
..++|+|||||..|..-|..|.+ .|++|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~------~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD------TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCc
Confidence 45899999999999999999988 78899999754
No 468
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.56 E-value=0.12 Score=58.56 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=28.6
Q ss_pred eEEEECCChhHHHHHHHHHHH--HHhcCcEEEEecCCc
Q 009310 246 RVAVVGCGYSGVELAATVSER--LEEKGIVQAINVETT 281 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~--~~~~~~Vtlv~~~~~ 281 (538)
+|+|||||+.|+-+|..|++. +.+ |+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence 799999999999999999876 344 999998765
No 469
>PLN02985 squalene monooxygenase
Probab=94.55 E-value=0.44 Score=51.37 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
..+|+|||+|+.|+-+|..|++.+.+ |+++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcC
Confidence 45899999999999999999887665 99999864
No 470
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.50 E-value=0.11 Score=49.73 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=29.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
+|+|||+|..|+-+|..|...+.+ |++++++..+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCCc
Confidence 699999999999999999988877 9999986443
No 471
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.48 E-value=0.25 Score=51.76 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=23.4
Q ss_pred EEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 247 VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
|+|||+|.+|+-.|..+++.+.+ |.+++..
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~---V~lvek~ 31 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAK---VLLVEKG 31 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT----EEEEESS
T ss_pred EEEECCCHHHHHHHHHHhhhcCe---EEEEEee
Confidence 78999999999999999887765 7777754
No 472
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.46 E-value=0.092 Score=55.71 Aligned_cols=56 Identities=30% Similarity=0.325 Sum_probs=41.5
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCCCCChhhHHHHHHHHHhCCCEEEcCc
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 309 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~ 309 (538)
+++|+|+|+|.+|..+|..|++.+.+ |+++++... +.+ ....+.|.+.|++++.+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~ 60 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKEE------DQL-KEALEELGELGIELVLGE 60 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCch------HHH-HHHHHHHHhcCCEEEeCC
Confidence 57999999999999999999998877 999887542 122 333345677788766543
No 473
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.38 E-value=0.028 Score=59.32 Aligned_cols=58 Identities=22% Similarity=0.072 Sum_probs=39.2
Q ss_pred CCCCeeeCCCcccCC-----CCCEEEcccccc-ccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 009310 392 ARGQAETDETLCVKG-----HPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (538)
Q Consensus 392 ~~G~i~vd~~l~~~~-----~~~VfaiGD~~~-~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l 449 (538)
-.|.+.+|+..|+.. .|++||+|.++. ........-......|+-.|+++++++++..
T Consensus 367 T~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 367 TRYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred eccceEECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 357788888888743 489999999863 1111111112355678899999999998653
No 474
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.30 E-value=0.32 Score=49.95 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=56.0
Q ss_pred HHHHhcCcEEEEecCCccCCCC--ChhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCC
Q 009310 265 ERLEEKGIVQAINVETTICPTG--TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 342 (538)
Q Consensus 265 ~~~~~~~~Vtlv~~~~~~l~~~--~~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (538)
+++.+.+..+..+...++.|.. ...+.+.+++.+++.||++++++.|++|++ +
T Consensus 61 ~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~-------------------------~ 115 (376)
T TIGR03862 61 DWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG-------------------------G 115 (376)
T ss_pred HHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC-------------------------C
Confidence 3444455335566667887743 456778899999999999999999999933 2
Q ss_pred ceEEeecccccCCcceEEeccEEEEecCCCC
Q 009310 343 KYILELQPAIKGLESQIFEADLVLWTVGSKP 373 (538)
Q Consensus 343 ~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~p 373 (538)
+..+.+. .++..+.+|.||+|+|-.+
T Consensus 116 ~~~v~~~-----~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 116 TLRFETP-----DGQSTIEADAVVLALGGAS 141 (376)
T ss_pred cEEEEEC-----CCceEEecCEEEEcCCCcc
Confidence 3344321 1335699999999999864
No 475
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=94.29 E-value=0.44 Score=47.15 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEEecCCC
Q 009310 293 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372 (538)
Q Consensus 293 ~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~a~G~~ 372 (538)
.++..+++.|+.++.+..|..+.-.+... ..+.+.. ++|..+.++.+|+++|.-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~--------------------~~v~V~T------t~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEG--------------------NHVSVQT------TDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCC--------------------ceeEEEe------ccCCeeecceEEEEecHH
Confidence 34567788999999999998877322100 3444442 378889999999999976
Q ss_pred CC
Q 009310 373 PL 374 (538)
Q Consensus 373 p~ 374 (538)
-+
T Consensus 212 i~ 213 (399)
T KOG2820|consen 212 IN 213 (399)
T ss_pred HH
Confidence 55
No 476
>PLN02785 Protein HOTHEAD
Probab=94.05 E-value=0.068 Score=58.43 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
...+|+||||||.||+.+|.+|.+ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence 345999999999999999999987 369999999864
No 477
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.91 E-value=0.067 Score=50.95 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=31.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
++++|||+|..|.+.|..|.+ .|++|++||+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~------~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE------EGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh------CCCceEEEEcCHH
Confidence 479999999999999999998 7899999999864
No 478
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=93.73 E-value=0.17 Score=54.33 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=27.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCE-EEEEcCC
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQS 117 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~ 117 (538)
-+...+|||||||-+|.++|++|++ +|.+ .++.|+.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak------~g~k~avlle~~ 72 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAK------RGMKGAVLLERS 72 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHH------ccccceEEEeee
Confidence 3445799999999999999999999 4556 4444443
No 479
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.70 E-value=0.17 Score=51.26 Aligned_cols=71 Identities=25% Similarity=0.447 Sum_probs=47.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC----------cccCcchhhhhcCCCCC--ccccccHHHHh
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER----------FVFKPMLYELLSGEVDA--WEIAPRFADLL 147 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~----------~~~~p~~~~~~~g~~~~--~~~~~~~~~~~ 147 (538)
.+|.|||.|+.||..|.-|++ .||+|+.+|..+. .-|-|.+.+++...... -....+++.-+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~------~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~ 74 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE------LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAV 74 (414)
T ss_pred CceEEECCchHHHHHHHHHHH------cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHH
Confidence 379999999999999999998 6899999998762 23455555555433322 22334455545
Q ss_pred ccCCcEEEE
Q 009310 148 ANTGVQFFK 156 (538)
Q Consensus 148 ~~~~v~~~~ 156 (538)
+...+.|+.
T Consensus 75 ~~adv~fIa 83 (414)
T COG1004 75 KDADVVFIA 83 (414)
T ss_pred hcCCEEEEE
Confidence 455555543
No 480
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.64 E-value=0.11 Score=48.53 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (538)
..++|+|||||-.|...|..|.+ .|++|+||+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~------~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK------YGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEcCC
Confidence 45899999999999999999988 67899999875
No 481
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.62 E-value=0.08 Score=56.34 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=30.4
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+|+|||.|++|+++|+.|.+ .|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~------~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA------QGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH------CCCEEEEECCCCc
Confidence 69999999999999999998 7889999998765
No 482
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.57 E-value=0.085 Score=39.78 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.9
Q ss_pred EECCChhHHHHHHHHHHHHHhcCcEEEEecCCccC
Q 009310 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (538)
Q Consensus 249 VVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l 283 (538)
|||+|.+|+-+|..|.+.+.+ |+++++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCcccC
Confidence 899999999999999887554 99999988753
No 483
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=93.56 E-value=0.071 Score=54.46 Aligned_cols=56 Identities=9% Similarity=-0.075 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHhCCCEEEcCceeeEEeccccccccccCCCCCcccccccccCCCceEEeecccccCCcceEEeccEEEE
Q 009310 288 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 367 (538)
Q Consensus 288 ~~~~~~~~~~l~~~gV~v~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~D~vI~ 367 (538)
..+...+.+-+++.|-+|.+...|.+|.-+++.. .+|.++ +|+++.+..|+.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka--------------------~GV~L~--------dG~ev~sk~VvS 315 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKA--------------------VGVRLA--------DGTEVRSKIVVS 315 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeE--------------------EEEEec--------CCcEEEeeeeec
Confidence 4567778888999999999999999998766322 567776 899999977777
Q ss_pred ecCC
Q 009310 368 TVGS 371 (538)
Q Consensus 368 a~G~ 371 (538)
-++.
T Consensus 316 NAt~ 319 (561)
T KOG4254|consen 316 NATP 319 (561)
T ss_pred CCch
Confidence 6553
No 484
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.46 E-value=0.22 Score=46.70 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=29.0
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
+++|+|||||.+|..-+..|.+.+.+ |+++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~---VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQ---LRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence 67999999999999999999887766 9998764
No 485
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.34 E-value=0.077 Score=52.08 Aligned_cols=49 Identities=22% Similarity=0.193 Sum_probs=39.6
Q ss_pred eCCCcccCCCCCEEEccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 009310 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 455 (538)
Q Consensus 398 vd~~l~~~~~~~VfaiGD~~~~~~~~~~~~~~~~~~A~~qg~~aa~~i~~~l~~~~~~ 455 (538)
.|.++|..+.|++|++|-.+.. .-...+...|-.++.|.++...++++.
T Consensus 325 L~~tl~lk~~p~l~fAGQitG~---------EGYveSaA~Gllag~naa~~~~g~~~~ 373 (439)
T COG1206 325 LDPTLQLKKRPNLFFAGQITGV---------EGYVESAASGLLAGINAARLALGEEPL 373 (439)
T ss_pred hhHHhhcccCCCcEEeeeeecc---------hhhhHHhhhhHHHhhHHHHHhcCCCCC
Confidence 4567888889999999999985 345567788999999999998887643
No 486
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.29 E-value=0.28 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.7
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHh
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEE 269 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~ 269 (538)
-.|+|||||..|+|.|...++.+.+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~ 53 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGAR 53 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCc
Confidence 3799999999999999999998876
No 487
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.19 E-value=0.16 Score=50.36 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=65.7
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCcccCcchhhhhcCCCCCccccccHHHHhccCCcEEE
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (538)
...+++++|||||+.+++.|--++. -|.++-|+=|.+.. +.+. + +.+.....+.+...+++++
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~g------LgsethlfiR~~kv---------LR~F-D-~~i~~~v~~~~~~~ginvh 248 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAG------LGSETHLFIRQEKV---------LRGF-D-EMISDLVTEHLEGRGINVH 248 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhh------cCCeeEEEEecchh---------hcch-h-HHHHHHHHHHhhhcceeec
Confidence 3467899999999999999998887 45688887766542 1111 0 2222334456667788887
Q ss_pred Ee-eEEEEcCCCCcCcCCCceeecccEEEcCCceEEEeeEEEEeCCCCCCCC
Q 009310 156 KD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (538)
Q Consensus 156 ~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~yD~lVlAtG~~~~~p 206 (538)
.. .++.+.....- ...+....+.....|.|+-|+|-.|+..
T Consensus 249 ~~s~~~~v~K~~~g----------~~~~i~~~~~i~~vd~llwAiGR~Pntk 290 (478)
T KOG0405|consen 249 KNSSVTKVIKTDDG----------LELVITSHGTIEDVDTLLWAIGRKPNTK 290 (478)
T ss_pred ccccceeeeecCCC----------ceEEEEeccccccccEEEEEecCCCCcc
Confidence 63 55555322210 0123344454556999999999877654
No 488
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.18 E-value=0.11 Score=47.67 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.3
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 81 ~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
+|.|||+|..|...|..+++ .|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR------AGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH------TTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHh------CCCcEEEEECChH
Confidence 68999999999999999998 6889999999764
No 489
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.12 E-value=0.13 Score=55.12 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=35.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCCc
Q 009310 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (538)
Q Consensus 76 ~~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (538)
....+|.+|||||.||...|.+|.+ ++..+|.|+|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSE-----n~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSE-----NPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhcc-----CCCceEEEEecCCCC
Confidence 4566999999999999999999998 378999999997754
No 490
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.06 E-value=0.12 Score=52.36 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=30.0
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP 284 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~ 284 (538)
+|+|||||+.|+-+|..|++.+.+ |+++++.+.+.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~~~~ 38 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGID---VTIIERRPDPRP 38 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSSCCC
T ss_pred eEEEECCCHHHHHHHHHHHhcccc---cccchhcccccc
Confidence 799999999999999999998777 999999876544
No 491
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.82 E-value=0.86 Score=48.89 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=24.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~ 279 (538)
.|+|||+|..|+-.|..+++.+ .|.+++..
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G----~V~lleK~ 33 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQG----RVIVLSKA 33 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCC----CEEEEEcc
Confidence 6999999999999999987643 27777765
No 492
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.65 E-value=1.1 Score=48.74 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=26.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCC
Q 009310 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (538)
Q Consensus 246 ~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~ 280 (538)
.|+|||+|..|+-.|..+++.+.+ |.+++...
T Consensus 18 DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~ 49 (541)
T PRK07804 18 DVVVVGSGVAGLTAALAARRAGRR---VLVVTKAA 49 (541)
T ss_pred CEEEECccHHHHHHHHHHHHcCCe---EEEEEccC
Confidence 799999999999999999876654 88887644
No 493
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.63 E-value=0.096 Score=51.00 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
...+|+|||+|-.|-.+|..|++.|. -+++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCE
Confidence 44799999999999999999999542 4899999875
No 494
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.53 E-value=0.14 Score=47.11 Aligned_cols=34 Identities=38% Similarity=0.476 Sum_probs=27.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 80 ~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
++|.|||.|+.|+..|..|++ .|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~------~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE------KGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH------TTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHh------CCCEEEEEeCChH
Confidence 489999999999999999999 7899999999874
No 495
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.49 E-value=0.14 Score=53.17 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=30.6
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
++|+|||||.+|+|+|..|++.+.+ |+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCcc
Confidence 4899999999999999999987766 9999976554
No 496
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.46 E-value=0.19 Score=52.40 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=30.7
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCcc
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~ 282 (538)
++|+|||||+.|+-+|..|++.+.+ |+++++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcc
Confidence 5899999999999999999887665 9999987754
No 497
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.30 E-value=0.22 Score=45.09 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCC
Q 009310 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (538)
Q Consensus 78 ~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (538)
.+.+|||+|+|.+|..||..|.. -|++|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~------lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKG------LGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHH------TT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhH------CCCEEEeccCCH
Confidence 44799999999999999999998 578999999764
No 498
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.23 E-value=0.31 Score=45.52 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=27.9
Q ss_pred CCeEEEECCChhHHHHHHHHHHHHHhcCcEEEEec
Q 009310 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (538)
Q Consensus 244 ~~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~ 278 (538)
+++|+|||||.+|...+..|.+.+.+ |+++.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~---V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAH---IVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEcC
Confidence 68999999999999999999887655 999865
No 499
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.09 E-value=0.072 Score=55.60 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCEEEEEcCCCC
Q 009310 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (538)
Q Consensus 77 ~~~~~VVIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (538)
....||+|||||..|-.||.-.+- +|+++.|+|++++
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~T------RGLktaLVE~~DF 101 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAAT------RGLKTALVEAGDF 101 (680)
T ss_pred CCcccEEEECCCccCcceeehhhc------ccceeEEEecccc
Confidence 345899999999999999999987 8999999999985
No 500
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=91.94 E-value=0.48 Score=47.64 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=46.0
Q ss_pred CeEEEECCChhHHHHHHHHHHHHHhcCcEEEEecCCccCC--------CCC--hhhHHHHHHHHHhCCCEEEcCcee
Q 009310 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--------TGT--PGNREAALKVLSARKVQLVLGYFV 311 (538)
Q Consensus 245 ~~VvVVGgG~~g~E~A~~l~~~~~~~~~Vtlv~~~~~~l~--------~~~--~~~~~~~~~~l~~~gV~v~~~~~V 311 (538)
.+|.|||+|+.|+-+|..|.+.-. .-.|++++..+..+. +.+ +.+-..+.+.++.....+..|..|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~-~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHP-NAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCC-CCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 499999999999999999877522 223999998776542 211 223345666777777888877655
Done!