Citrus Sinensis ID: 009310

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MASIALSASAALLPLKRNSGAWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS
cccccccccccEEccccccccccccccccccccccHHccccccccEEEEccccccccccCECccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccccccccEEEEEcccccccccccHHHHHcccccccccHHHHHHHHcccccEEEEEEEEECcccccEEcccccccccccEEEcccccEEcccEEEEEccccccccccccHHHcccccccHHHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEEcEEEEEEEEcccccccccccccccccccccccccccEEEEEcccEEccccEEEEccEEEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEcccccEEEEccccEEEcccccccCEECcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHEEEcccccccc
***********LLPLKRNSGAWSKLFPFSSKSYLSFKTCRKNRFISFA****************************KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV**PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQST*T******
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SSSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASIALSASAALLPLKRNSGAWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
NADH dehydrogenase C1, chloroplastic/mitochondrial Involved in an elecron flow toward the plastoglobule plastoquinone pool. Required for plastochromanol-8 accumulation and for phylloquinone (vitamin K1) production.probableQ8GXR9

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1Q1R, chain A
Confidence level:very confident
Coverage over the Query: 78-167,181-232,243-318,342-462
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Template: 3NTD, chain A
Confidence level:very confident
Coverage over the Query: 80-168,182-447
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Template: 4G6H, chain A
Confidence level:very confident
Coverage over the Query: 76-316,342-519
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Template: 3CGB, chain A
Confidence level:very confident
Coverage over the Query: 81-167,181-318,342-445
View the alignment between query and template
View the model in PyMOL
Template: 3K30, chain A
Confidence level:very confident
Coverage over the Query: 30-158,181-227,240-317,343-460
View the alignment between query and template
View the model in PyMOL