BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009311
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHYD N + G K+ +L+PP LYP V+ HS + +NPD+ +P
Sbjct: 196 TPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRHSQVDFDNPDYERFPNF 255
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 256 QNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 313
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 314 QKVAIMRNIEKMLGEALG 331
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 106/279 (37%), Gaps = 57/279 (20%)
Query: 91 PSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAP 150
PS F Q P + KG W W+ L+Y+QE G RT P
Sbjct: 13 PSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-----LEYIQEIAGC--------RTVP 59
Query: 151 IFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDV 210
+ G E + T ++ EP DV
Sbjct: 60 VEVGSRYTDEEWSQTLMTVNEFISKYIVN---------EPR-----------------DV 93
Query: 211 APQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLET----KKLAAINLWMNNAKSKSS 266
YLAQ + Q+ LK+DI+ P + ++ IN W + S
Sbjct: 94 G----YLAQHQLFD-------QIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISP 142
Query: 267 AHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEH 326
H DP N L V G K + L+ P S LYP + N S + +ENPD +P+
Sbjct: 143 LHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTH-LLHNTSQVDVENPDLEKFPKFAK 201
Query: 327 SGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWW 365
+ S IL G+ LFIP ++H V + DL+ +V+FWW
Sbjct: 202 APFLS--CILSPGEILFIPVKYWHYVRALDLSFSVSFWW 238
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 106/279 (37%), Gaps = 57/279 (20%)
Query: 91 PSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAP 150
PS F Q P + KG W W+ L+Y+QE G RT P
Sbjct: 22 PSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-----LEYIQEIAGC--------RTVP 68
Query: 151 IFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDV 210
+ G E + T ++ EP DV
Sbjct: 69 VEVGSRYTDEEWSQTLMTVNEFISKYIVN---------EPR-----------------DV 102
Query: 211 APQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLET----KKLAAINLWMNNAKSKSS 266
YLAQ + Q+ LK+DI+ P + ++ IN W + S
Sbjct: 103 G----YLAQHQLFD-------QIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISP 151
Query: 267 AHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEH 326
H DP N L V G K + L+ P S LYP + N S + +ENPD +P+
Sbjct: 152 LHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTH-LLHNTSQVDVENPDLEKFPKFAK 210
Query: 327 SGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWW 365
+ S IL G+ LFIP ++H V + DL+ +V+FWW
Sbjct: 211 APFLS--CILSPGEILFIPVKYWHYVRALDLSFSVSFWW 247
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 106/279 (37%), Gaps = 57/279 (20%)
Query: 91 PSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAP 150
PS F Q P + KG W W+ L+Y+QE G RT P
Sbjct: 9 PSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-----LEYIQEIAGC--------RTVP 55
Query: 151 IFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDV 210
+ G E + T ++ EP DV
Sbjct: 56 VEVGSRYTDEEWSQTLMTVNEFISKYIVN---------EPR-----------------DV 89
Query: 211 APQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLET----KKLAAINLWMNNAKSKSS 266
YLAQ + Q+ LK+DI+ P + ++ IN W + S
Sbjct: 90 G----YLAQHQLFD-------QIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISP 138
Query: 267 AHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEH 326
H DP N L V G K + L+ P S LYP + N S + +ENPD +P+
Sbjct: 139 LHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTH-LLHNTSQVDVENPDLEKFPKFAK 197
Query: 327 SGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWW 365
+ S IL G+ LFIP ++H V + DL+ +V+FWW
Sbjct: 198 APFLS--CILSPGEILFIPVKYWHYVRALDLSFSVSFWW 234
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHYD N + G K+ +L+PP LYP V+ S + +NPD+ +P
Sbjct: 196 TPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF 255
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 256 QNVVGY--ETVVGPGDVLYIPXYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 313
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 314 QKVAIXRNIEKXLGEALG 331
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 106/279 (37%), Gaps = 57/279 (20%)
Query: 91 PSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAP 150
PS F Q P + KG W W+ L+Y+QE G RT P
Sbjct: 9 PSLQHFREQFLVPGRPVILKGVADHWPCXQKWS-----LEYIQEIAGC--------RTVP 55
Query: 151 IFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDV 210
+ G E + T ++ EP DV
Sbjct: 56 VEVGSRYTDEEWSQTLXTVNEFISKYIVN---------EPR-----------------DV 89
Query: 211 APQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLET----KKLAAINLWMNNAKSKSS 266
YLAQ + Q+ LK+DI+ P + ++ IN W + S
Sbjct: 90 G----YLAQHQLFD-------QIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISP 138
Query: 267 AHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEH 326
H DP N L V G K + L+ P S LYP + N S + +ENPD +P+
Sbjct: 139 LHQDPQQNFLVQVXGRKYIRLYSPQESGALYPHDTH-LLHNTSQVDVENPDLEKFPKFAK 197
Query: 327 SGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWW 365
+ S IL G+ LFIP ++H V + DL+ +V+FWW
Sbjct: 198 APFLS--CILSPGEILFIPVKYWHYVRALDLSFSVSFWW 234
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 232 QLETLKEDIATPAFLETKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPA 291
Q LK DI P F + ++ + +++ + HYD NLL V G K+VVL+ P
Sbjct: 147 QFPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPR 206
Query: 292 ASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQ 351
+ LY E N ++NPD + YP + Y + L AGD LFIP WFH
Sbjct: 207 DAQYLYLKGTKSEVLN-----IDNPDLAKYPLFSKARRY--ECSLEAGDVLFIPALWFHN 259
Query: 352 VDSDDLTIAVNFWWR 366
V S++ + VN +W+
Sbjct: 260 VISEEFGVGVNIFWK 274
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHYD N + G K+ +L+PP LYP V+ S + +NPD+ +P
Sbjct: 182 TPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF 241
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 242 QNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 299
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 300 QKVAIMRNIEKMLGEALG 317
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHYD N + G K+ +L+PP LYP V+ S + +NPD+ +P
Sbjct: 198 TPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF 257
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 258 QNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 315
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 316 QKVAIMRNIEKMLGEALG 333
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHYD N + G K+ +L+PP LYP V+ S + +NPD+ +P
Sbjct: 196 TPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF 255
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 256 QNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 313
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 314 QKVAIMRNIEKMLGEALG 331
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHYD N + G K+ +L+PP LYP V+ S + +NPD+ +P
Sbjct: 199 TPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF 258
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 259 QNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 316
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 317 QKVAIMRNIEKMLGEALG 334
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHY N + G K+ +L+PP LYP V+ S + +NPD+ +P
Sbjct: 196 TPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF 255
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 256 QNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 313
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 314 QKVAIMRNIEKMLGEALG 331
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 265 SSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324
+ AHY N + G K+ +L+PP LYP V+ S + +NPD+ +P
Sbjct: 196 TPAHYAEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF 255
Query: 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYY 381
++ Y + ++ GD L+IP W+H ++S +TI VNFW++ + E+ +
Sbjct: 256 QNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAH 313
Query: 382 LRRILRRMMDREMNQALA 399
+ + R +++ + +AL
Sbjct: 314 QKVAIMRNIEKMLGEALG 331
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 21/158 (13%)
Query: 222 IMSAENEETVQLETLKEDIATPAFL---------ETKKLAAINLWMNNAKSKSSAHYDPH 272
I + E + L ED P F E ++ M +S + H DP
Sbjct: 132 IFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPL 191
Query: 273 HN--LLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHS--SISLENPDFSIYPRAE--- 325
+V G K+ L+P ++P E N +I+ N IYPR +
Sbjct: 192 GTSAWNALVQGHKRWCLFP-TSTPRELIKVTRDEGGNQQDEAITWFN---VIYPRTQLPT 247
Query: 326 HSGEYSQKVILHA-GDALFIPEGWFHQVDSDDLTIAVN 362
E+ IL G+ +F+P GW+H V + D TIA+
Sbjct: 248 WPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 285
>pdb|2FSQ|A Chain A, Crystal Structure Of The Conserved Protein Of Unknown
Function Atu0111 From Agrobacterium Tumefaciens Str. C58
Length = 243
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 30 MLNIDLEFVSRLVTAAPERTARSLGYSRGK--PAADSFLSVHHDVGKEMEESLEIRSFEF 87
+++ DL+++S P R S + G+ P + + H G + E ++ F
Sbjct: 7 LVSKDLDYISTANHDQPPRHLGSRFSAEGEFLPEPGNTVVCHLVEGSQTESAIVSTRQRF 66
Query: 88 DQLPSATQFASQIESSNIPAVFKGCIKDWKAFSNW-------NPTEGGLDYLQERLGT 138
P A+Q A SS VF+G I+ +A W P + DY ++RL T
Sbjct: 67 LDXPEASQLAFTPVSSLHXTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDRLST 124
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 262 KSKSSAHYDPHHN--LLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHS--SISLENPD 317
+S + H DP +V G K+ L+P ++P E N +I+ N
Sbjct: 182 RSGTGIHIDPLGTSAWNALVQGHKRWCLFP-TSTPRELIKVTRDEGGNQQDEAITWFN-- 238
Query: 318 FSIYPRAE---HSGEYSQKVILHA-GDALFIPEGWFHQVDSDDLTIAVN 362
IYPR + E+ IL G+ +F+P GW+H V + D TIA+
Sbjct: 239 -VIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 286
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 332 QKVILHAGDALFIPEGWFHQVDS--DDLTIAVNFWWRSSIMSSLSEHMDAYYLRRILRRM 389
++V++ G L IP GW H V + D L NF + +L M Y+L +R+
Sbjct: 366 KRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNF----LHLGNLEMQMRVYHLENAIRKE 421
Query: 390 MDRE 393
+ E
Sbjct: 422 IRSE 425
>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
Length = 489
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 251 LAAINLWMNNAKSKSSA-HYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHS 309
+A N+++ S+ A HYD + + G K LW VY +
Sbjct: 163 MAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRK---LW-----------RVYRPRAPTE 208
Query: 310 SISL-ENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDD 356
++L +P+FS + GE + +L GD L+ P G+ HQ + D
Sbjct: 209 ELALTSSPNFS----QDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQD 252
>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|B Chain B, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|C Chain C, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|D Chain D, Crystal Structure Of Histone Demethylase No66
Length = 463
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 251 LAAINLWMNNAKSKSSA-HYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHS 309
+A N+++ S+ A HYD + + G K LW VY +
Sbjct: 144 MAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRK---LW-----------RVYRPRAPTE 189
Query: 310 SISL-ENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDD 356
++L +P+FS + GE + +L GD L+ P G+ HQ + D
Sbjct: 190 ELALTSSPNFS----QDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQD 233
>pdb|1VRB|A Chain A, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|B Chain B, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|C Chain C, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|D Chain D, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
Length = 342
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 233 LETLKEDIATPAFLETKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAA 292
+E LK ++ PA +K A + N K AH+D + NL+ + G K W A
Sbjct: 126 IEKLKAELRLPAGTSSK--AIVYAAKNGGGFK--AHFDAYTNLIFQIQGEKT---WKLAK 178
Query: 293 SPMLYPMSVYGEASNHSSISLENP----DFSIYPRAEHSGEY---SQKVILHAGDALFIP 345
+ + H +S E P D Y + + E ++ V L G L++P
Sbjct: 179 NENV------SNPXQHYDLS-EAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTXLYLP 231
Query: 346 EGWFHQVDSDDLTIAVN 362
G +H SD T+A+N
Sbjct: 232 RGLWHSTKSDQATLALN 248
>pdb|3BB6|A Chain A, Crystal Structure Of The P64488 Protein From E.Coli
(Strain K12). Northeast Structural Genomics Consortium
Target Er596
pdb|3BB6|B Chain B, Crystal Structure Of The P64488 Protein From E.Coli
(Strain K12). Northeast Structural Genomics Consortium
Target Er596
pdb|3BB6|C Chain C, Crystal Structure Of The P64488 Protein From E.Coli
(Strain K12). Northeast Structural Genomics Consortium
Target Er596
pdb|3BB6|D Chain D, Crystal Structure Of The P64488 Protein From E.Coli
(Strain K12). Northeast Structural Genomics Consortium
Target Er596
Length = 127
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 325 EHSGEYSQKVILHAGD-ALFIPEGWFH-QVDSDDLTIAVNFW 364
EHS E Q +++ AG A+F PE W + + +DD ++F+
Sbjct: 58 EHSAEPDQVILIEAGQFAVFPPEKWHNIEAXTDDTYFNIDFF 99
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 299 MSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVIL 336
MS+YGEA NH+S+ +FSI + G+ S VIL
Sbjct: 164 MSMYGEAFNHASVKESFGNFSII-ELPYVGDTSMVVIL 200
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 299 MSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVIL 336
MS+YGEA NH+S+ +FSI + G+ S VIL
Sbjct: 109 MSMYGEAFNHASVKESFGNFSII-ELPYVGDTSMVVIL 145
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 299 MSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVIL 336
MS+YGEA NH+S+ +FSI + G+ S VIL
Sbjct: 164 MSMYGEAFNHASVKESFGNFSII-ELPYVGDTSMVVIL 200
>pdb|1N7U|A Chain A, The Receptor-Binding Protein P2 Of Bacteriophage Prd1:
Crystal Form I
Length = 554
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 297 YPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDD 356
YP + Y A + + +ENPD I+ +G Y+ ++ GDAL I + F VD
Sbjct: 468 YPEAAYYVAGAATFMDVENPDEIIFILRNGAGWYACEI----GDALKIADDEFDSVDY-- 521
Query: 357 LTIAVNFWWRSSIM 370
F +R +M
Sbjct: 522 ------FAYRGGVM 529
>pdb|3DL3|A Chain A, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|B Chain B, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|D Chain D, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|E Chain E, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|G Chain G, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|H Chain H, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|F Chain F, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|I Chain I, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98
Length = 119
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 333 KVILHAGDALFIPEGWFHQVD-SDDLTIAVNFW 364
KV+++AG P ++H+++ SDD +NFW
Sbjct: 65 KVVINAGQFATSPPQYWHRIELSDDAQFNINFW 97
>pdb|1N7V|A Chain A, The Receptor-Binding Protein P2 Of Bacteriophage Prd1:
Crystal Form Iii
Length = 555
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 297 YPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDD 356
YP + Y A + + +ENPD I+ +G Y+ ++ GDAL I + F VD
Sbjct: 468 YPEAAYYVAGAATFMDVENPDEIIFILRNGAGWYACEI----GDALKIADDEFDSVDY-- 521
Query: 357 LTIAVNFWWRSSIM 370
F +R +M
Sbjct: 522 ------FAYRGGVM 529
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,420,023
Number of Sequences: 62578
Number of extensions: 600497
Number of successful extensions: 1333
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 45
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)