Query 009311
Match_columns 538
No_of_seqs 280 out of 1532
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 23:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13621 Cupin_8: Cupin-like d 100.0 1.5E-45 3.2E-50 364.8 19.1 237 93-368 1-248 (251)
2 KOG2130 Phosphatidylserine-spe 100.0 2.7E-41 5.8E-46 334.9 11.8 271 63-413 37-324 (407)
3 KOG2132 Uncharacterized conser 100.0 2E-34 4.3E-39 288.7 5.0 219 89-361 133-355 (355)
4 KOG2508 Predicted phospholipas 100.0 2E-30 4.4E-35 261.5 12.9 241 80-368 22-310 (437)
5 KOG2131 Uncharacterized conser 99.9 3.7E-22 7.9E-27 202.5 8.8 263 81-370 29-306 (427)
6 PF08007 Cupin_4: Cupin superf 99.4 8.7E-13 1.9E-17 137.3 12.9 97 252-368 114-212 (319)
7 COG2850 Uncharacterized conser 99.4 2.8E-12 6.1E-17 132.0 12.9 113 232-368 102-215 (383)
8 PF02373 JmjC: JmjC domain, hy 99.1 2.1E-11 4.7E-16 106.9 1.1 109 256-365 2-114 (114)
9 KOG3706 Uncharacterized conser 98.7 1.5E-08 3.2E-13 107.1 6.7 127 251-404 316-451 (629)
10 KOG1633 F-box protein JEMMA an 98.5 1.8E-07 4E-12 106.5 8.1 103 252-367 126-231 (776)
11 KOG2132 Uncharacterized conser 97.7 1.1E-05 2.5E-10 82.5 1.8 107 258-367 180-291 (355)
12 COG2140 Thermophilic glucose-6 97.2 0.0017 3.6E-08 63.4 9.2 70 261-367 89-163 (209)
13 KOG1356 Putative transcription 96.8 0.00085 1.8E-08 76.1 3.7 46 330-381 797-842 (889)
14 PF00190 Cupin_1: Cupin; Inte 95.5 0.047 1E-06 50.2 7.4 79 258-367 41-121 (144)
15 PRK04190 glucose-6-phosphate i 95.1 0.16 3.6E-06 49.3 10.0 67 264-367 86-157 (191)
16 PF06560 GPI: Glucose-6-phosph 94.7 0.12 2.6E-06 49.9 7.6 79 258-369 62-148 (182)
17 PF07883 Cupin_2: Cupin domain 94.5 0.23 5E-06 39.1 7.9 53 262-356 8-61 (71)
18 smart00558 JmjC A domain famil 94.4 0.031 6.6E-07 43.1 2.5 28 254-281 28-57 (57)
19 TIGR03404 bicupin_oxalic bicup 94.2 0.43 9.3E-06 51.1 11.5 75 256-368 250-326 (367)
20 PF02041 Auxin_BP: Auxin bindi 92.8 0.52 1.1E-05 43.8 7.9 70 252-355 42-114 (167)
21 TIGR03404 bicupin_oxalic bicup 92.1 1.7 3.7E-05 46.5 12.2 76 254-367 70-145 (367)
22 TIGR03037 anthran_nbaC 3-hydro 90.9 0.84 1.8E-05 43.1 7.2 69 256-362 32-100 (159)
23 smart00835 Cupin_1 Cupin. This 90.6 2.4 5.1E-05 39.0 10.0 76 255-367 34-110 (146)
24 KOG2508 Predicted phospholipas 89.8 0.8 1.7E-05 48.2 6.6 38 330-367 359-403 (437)
25 PRK13264 3-hydroxyanthranilate 89.2 1.5 3.2E-05 42.1 7.6 69 257-363 39-107 (177)
26 TIGR02272 gentisate_1_2 gentis 88.5 1.2 2.6E-05 47.0 7.1 60 260-360 89-148 (335)
27 TIGR01221 rmlC dTDP-4-dehydror 85.8 5.8 0.00013 38.2 9.4 85 252-367 44-133 (176)
28 PF05523 FdtA: WxcM-like, C-te 85.6 4.9 0.00011 36.6 8.5 72 256-367 35-111 (131)
29 COG0662 {ManC} Mannose-6-phosp 85.1 0.89 1.9E-05 41.0 3.4 25 333-357 76-100 (127)
30 COG1917 Uncharacterized conser 84.4 6.8 0.00015 35.1 8.9 63 254-358 45-108 (131)
31 COG4101 Predicted mannose-6-ph 83.1 1.2 2.6E-05 39.9 3.2 23 333-355 89-111 (142)
32 PF00908 dTDP_sugar_isom: dTDP 80.4 17 0.00036 35.0 10.2 84 253-367 44-133 (176)
33 TIGR02466 conserved hypothetic 79.8 10 0.00022 37.2 8.8 97 254-364 96-197 (201)
34 COG1898 RfbC dTDP-4-dehydrorha 79.0 16 0.00036 35.0 9.6 87 252-369 45-135 (173)
35 PF06052 3-HAO: 3-hydroxyanthr 78.0 9.8 0.00021 35.6 7.5 70 254-361 35-104 (151)
36 PRK13290 ectC L-ectoine syntha 73.6 6 0.00013 35.8 4.9 30 332-361 75-104 (125)
37 PF02311 AraC_binding: AraC-li 72.6 31 0.00068 29.6 9.2 64 262-367 13-78 (136)
38 PF05899 Cupin_3: Protein of u 69.5 2.8 6E-05 34.2 1.6 16 333-348 45-60 (74)
39 PLN00212 glutelin; Provisional 67.1 24 0.00051 39.4 8.6 68 262-365 358-426 (493)
40 COG3450 Predicted enzyme of th 63.7 5.3 0.00011 35.9 2.3 19 332-350 82-100 (116)
41 PRK09943 DNA-binding transcrip 62.3 11 0.00024 36.0 4.4 35 332-366 146-180 (185)
42 KOG2107 Uncharacterized conser 62.3 8.1 0.00018 36.7 3.3 27 330-356 114-140 (179)
43 PF13759 2OG-FeII_Oxy_5: Putat 60.3 12 0.00026 32.1 3.9 33 331-363 65-100 (101)
44 PF01050 MannoseP_isomer: Mann 59.8 11 0.00023 35.4 3.7 24 333-356 103-126 (151)
45 PF09313 DUF1971: Domain of un 58.3 54 0.0012 27.6 7.3 50 275-359 28-77 (82)
46 PRK15457 ethanolamine utilizat 57.0 21 0.00045 35.9 5.3 24 332-355 193-216 (233)
47 TIGR03214 ura-cupin putative a 56.9 14 0.00031 37.5 4.4 37 333-369 99-135 (260)
48 PRK05467 Fe(II)-dependent oxyg 56.6 28 0.00061 34.8 6.3 37 332-368 141-179 (226)
49 TIGR03214 ura-cupin putative a 55.3 12 0.00026 38.1 3.5 26 332-357 218-243 (260)
50 PF03079 ARD: ARD/ARD' family; 53.2 31 0.00067 32.6 5.7 37 331-367 114-151 (157)
51 PRK13502 transcriptional activ 53.2 48 0.001 33.3 7.6 34 332-365 56-89 (282)
52 PRK15131 mannose-6-phosphate i 51.9 15 0.00032 39.8 3.7 28 333-361 238-265 (389)
53 PF06249 EutQ: Ethanolamine ut 50.1 12 0.00025 35.3 2.2 17 332-348 113-129 (152)
54 COG5285 Protein involved in bi 48.6 36 0.00078 35.4 5.6 51 313-368 179-232 (299)
55 TIGR02272 gentisate_1_2 gentis 48.1 72 0.0016 33.9 8.0 66 258-367 256-321 (335)
56 PF07385 DUF1498: Protein of u 42.8 91 0.002 31.2 7.2 90 256-360 91-182 (225)
57 KOG0958 DNA damage-responsive 41.9 5.9 0.00013 45.1 -1.2 170 252-430 173-353 (690)
58 PRK11171 hypothetical protein; 41.8 38 0.00083 34.5 4.7 37 332-368 101-137 (266)
59 TIGR03027 pepcterm_export puta 41.2 15 0.00032 34.6 1.5 17 333-349 149-165 (165)
60 COG4766 EutQ Ethanolamine util 39.1 19 0.00042 33.8 1.9 16 333-348 137-152 (176)
61 PF13640 2OG-FeII_Oxy_3: 2OG-F 37.8 35 0.00077 28.6 3.2 30 336-365 66-99 (100)
62 PLN02288 mannose-6-phosphate i 37.6 24 0.00052 38.2 2.6 23 333-355 252-274 (394)
63 PRK11171 hypothetical protein; 37.5 48 0.001 33.8 4.7 36 332-367 223-258 (266)
64 COG1482 ManA Phosphomannose is 37.4 33 0.00071 36.0 3.5 23 333-355 159-181 (312)
65 TIGR01479 GMP_PMI mannose-1-ph 35.0 46 0.001 36.8 4.4 26 332-357 415-440 (468)
66 TIGR00218 manA mannose-6-phosp 34.4 19 0.00042 37.3 1.3 21 332-352 151-171 (302)
67 PF15138 Syncollin: Syncollin 33.4 46 0.00099 29.3 3.1 37 331-367 34-73 (112)
68 PLN00212 glutelin; Provisional 33.3 3E+02 0.0065 30.9 10.2 92 254-358 83-174 (493)
69 PRK13501 transcriptional activ 32.0 55 0.0012 33.2 4.1 35 332-366 56-90 (290)
70 PF05995 CDO_I: Cysteine dioxy 29.8 2.3E+02 0.005 26.9 7.7 78 261-367 84-165 (175)
71 COG3435 Gentisate 1,2-dioxygen 28.4 1.8E+02 0.0039 30.6 6.9 63 260-364 269-332 (351)
72 KOG2414 Putative Xaa-Pro amino 28.0 29 0.00062 37.7 1.2 71 279-362 385-462 (488)
73 PF12852 Cupin_6: Cupin 27.8 52 0.0011 31.1 2.9 23 333-355 56-78 (186)
74 PRK10296 DNA-binding transcrip 27.0 89 0.0019 31.4 4.6 35 333-367 62-97 (278)
75 TIGR03028 EpsE polysaccharide 26.5 32 0.00069 34.4 1.2 15 335-349 225-239 (239)
76 smart00702 P4Hc Prolyl 4-hydro 25.5 75 0.0016 29.8 3.5 35 332-366 139-178 (178)
77 COG1791 Uncharacterized conser 23.6 4.8E+02 0.01 25.2 8.3 33 332-364 118-152 (181)
78 PRK15460 cpsB mannose-1-phosph 23.3 1.1E+02 0.0023 34.2 4.6 29 332-360 424-452 (478)
79 PRK13500 transcriptional activ 22.6 1.1E+02 0.0024 31.5 4.4 36 332-367 86-121 (312)
80 COG3435 Gentisate 1,2-dioxygen 22.3 1.3E+02 0.0029 31.5 4.6 52 262-354 102-153 (351)
81 COG3128 PiuC Uncharacterized i 20.9 2E+02 0.0043 28.2 5.3 37 332-368 144-182 (229)
No 1
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=100.00 E-value=1.5e-45 Score=364.84 Aligned_cols=237 Identities=34% Similarity=0.631 Sum_probs=175.8
Q ss_pred HHHHHHHhhcCCCcEEEecCCCCcccccCCCCCCCChhhHHHHhCCCceEEEeccCC---CcccCC---cCccceeeecH
Q 009311 93 ATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTA---PIFYGD---IRRHERVALPF 166 (538)
Q Consensus 93 ~eeF~~~y~~~~~PVVIrG~~~~WpA~~kWt~~~~~ldYL~e~~Gd~~V~v~~~~~g---~~fy~d---~~s~~~~~m~f 166 (538)
|+||.++|+.+++||||+|++++|+|+++|++.+..++||++++|+..|.+....++ ...+.+ ........|+|
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTDDEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMPF 80 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-----HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEEH
T ss_pred CHHHHHHHhCCCCCEEEeCCccCCchhhhccchhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECcH
Confidence 689999999999999999999999999999964456799999999999999765422 122111 11245678999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeeeeccCCccchhhhhchhhHHhhcCCCcc-
Q 009311 167 STFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEETVQLETLKEDIATPAF- 245 (538)
Q Consensus 167 ~eFLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~q~~i~~~~~~e~~~~p~L~~Di~~P~~- 245 (538)
++|++.+...... .....+|+.+..+.. .+|.|.+|..+|..
T Consensus 81 ~~f~~~~~~~~~~------------------------------~~~~~~y~~~~~~~~-------~~~~l~~~~~~~~~~ 123 (251)
T PF13621_consen 81 RDFLDRLRANRDQ------------------------------RDKPYYYLQNWNLFE-------DFPELREDNDLPFPP 123 (251)
T ss_dssp HHHHHHHHHSCHS------------------------------TSSSEEEEEEETHHH-------HSHHHHCCS-CHHHH
T ss_pred HHHHHHHHhcccc------------------------------cCCceEEEecCchHH-------Hhhhhhhccccccch
Confidence 9999998764210 123578988776654 68999998666521
Q ss_pred -cccccccceEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcc
Q 009311 246 -LETKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324 (538)
Q Consensus 246 -l~~~~~~~~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f 324 (538)
+.+......++|||++|+.|++|+|+.+||+|||+|+|+|+||||++..+||+.+......++|.+|+.++|.++||++
T Consensus 124 ~~~~~~~~~~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~ 203 (251)
T PF13621_consen 124 ELFGKEPQSSNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKF 203 (251)
T ss_dssp CHSCCHCCEEEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGG
T ss_pred hhcccCccccEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhh
Confidence 1122345689999999999999999999999999999999999999999999988765556788999999999999999
Q ss_pred cccCCccEEEEEcCCCEEecCCCCeEEEeeC--C-ceEEEEEeeCCc
Q 009311 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDSD--D-LTIAVNFWWRSS 368 (538)
Q Consensus 325 ~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~--~-~sIaVN~w~~~~ 368 (538)
+.+ .+++|+|+|||+||||+||||+|+|+ + .|||||+||+..
T Consensus 204 ~~~--~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 204 RKA--PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp GG----EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred ccC--ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 988 47999999999999999999999999 6 499999999984
No 2
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-41 Score=334.86 Aligned_cols=271 Identities=20% Similarity=0.311 Sum_probs=203.9
Q ss_pred CCccccccccCcccccCCceeEEeCCCCCCHHHHHHHhhcCCCcEEEecCCCCcccccCCCCCCCChhhHHHHhCCCceE
Q 009311 63 DSFLSVHHDVGKEMEESLEIRSFEFDQLPSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVE 142 (538)
Q Consensus 63 ~~f~~~~~~~~~~~~~~~~I~r~~~~~~~S~eeF~~~y~~~~~PVVIrG~~~~WpA~~kWt~~~~~ldYL~e~~Gd~~V~ 142 (538)
++|.+..-.....+...+++.|. .++|.+||.++|+.+++||||+|++.+|||..+|| +++|.++||++++.
T Consensus 37 ~~y~e~f~~~~~~~~dn~~r~~~---~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT-----~drLskkyrnq~Fk 108 (407)
T KOG2130|consen 37 KRYYESFTLLDPFFFDNGNRERR---RNISVEEFIERFERPYKPVLLSGLTDGWPASEKWT-----LDRLSKKYRNQKFK 108 (407)
T ss_pred HHHHHhccccCccccccchhhhh---cCCCHHHHHHHhcccCCceEeeccccCCchhhhhh-----HHHHHHHhcCcccc
Confidence 34444444444444444556665 89999999999999999999999999999999999 99999999999999
Q ss_pred EEeccCCCcccCCcCccceeeecHHHHHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeeeeccC
Q 009311 143 AMLSRTAPIFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQAPI 222 (538)
Q Consensus 143 v~~~~~g~~fy~d~~s~~~~~m~f~eFLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~q~~i 222 (538)
+....+| ..++|+|+.|++|++... ...++|+++
T Consensus 109 cged~~g----------nsv~MKmkyY~~Ym~~~R---------------------------------ddsPLYiFD--- 142 (407)
T KOG2130|consen 109 CGEDNNG----------NSVKMKMKYYIEYMKSTR---------------------------------DDSPLYIFD--- 142 (407)
T ss_pred ccccCCC----------cceeeeHHHHHHHHhccc---------------------------------cCCCeEEec---
Confidence 9654433 357999999999987542 246899985
Q ss_pred CccchhhhhchhhHHhhcCCCcccccc-------cccceEEE--EeCCCCCceeeeccC--CceeEEEEeEEEEEEeCCC
Q 009311 223 MSAENEETVQLETLKEDIATPAFLETK-------KLAAINLW--MNNAKSKSSAHYDPH--HNLLCIVAGCKQVVLWPPA 291 (538)
Q Consensus 223 ~~~~~~e~~~~p~L~~Di~~P~~l~~~-------~~~~~~lW--iG~~gs~T~lH~D~~--~N~~~qI~G~Krw~LfPP~ 291 (538)
..++|+..-..|.+||.+|.||..+ .-...+.| |||++++|.+|+||. ++|+++|+|+|||+||||.
T Consensus 143 --ssFgE~~~~rkLl~dY~VPk~F~dDlF~y~g~e~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~GhKrW~LfPp~ 220 (407)
T KOG2130|consen 143 --SSFGEHAPRRKLLEDYSVPKYFRDDLFQYLGEERRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQGHKRWVLFPPG 220 (407)
T ss_pred --chhhcccchhhhhhhcCcchhhhHHHHHhcCcccCCCceeEEecCCCCCceeEECCcchHHHHHHhhccceeEEcCCC
Confidence 4455543344999999999988652 22335666 799999999999997 7999999999999999999
Q ss_pred CCCCCc-cccccCCCCCcccCCCCCCCCC-----CCCcccccCCccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEee
Q 009311 292 ASPMLY-PMSVYGEASNHSSISLENPDFS-----IYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWW 365 (538)
Q Consensus 292 ~~~~LY-p~p~~~~~~~~S~Vd~~~pD~~-----kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~ 365 (538)
..+.+- +.+..+.. .++.+..|.-. ++|....- ..++||++.|||++|||+||||.|.|++.+|||+.+|
T Consensus 221 ~p~~lvkv~~~e~g~---~~de~itwf~~~y~rt~~Pswp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf 296 (407)
T KOG2130|consen 221 TPPELVKVTVDEGGK---QPDEIITWFSTIYPRTQLPSWPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNF 296 (407)
T ss_pred CCCCceeecccccCC---CCcceechhhhccccccCCCCccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeecc
Confidence 986543 33322222 23333334333 44443332 3589999999999999999999999999999999999
Q ss_pred CCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhhc
Q 009311 366 RSSIMSSLSEHMDAYYLRRILRRMMDREMNQALAKASSADRERLKRHA 413 (538)
Q Consensus 366 ~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~~~lp~~~r~~w~~~~ 413 (538)
.+. +++.-.+|+.+.+ ..+|++ .|.+++
T Consensus 297 ~s~------eNf~~Vw~ktv~G----------rpkls~----~w~~~L 324 (407)
T KOG2130|consen 297 ASK------ENFPFVWHKTVRG----------RPKLSR----KWARLL 324 (407)
T ss_pred ccc------cCCceeeecccCC----------Ccchhh----HHHHHH
Confidence 996 3455667766666 566665 555554
No 3
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=2e-34 Score=288.74 Aligned_cols=219 Identities=32% Similarity=0.548 Sum_probs=184.1
Q ss_pred CCCCHHHHHHHhhcCCCcEEEecCCCCcccccCCCCCCCChhhHHHHhCCCceEEEeccCCCcccCCcCccceeeecHHH
Q 009311 89 QLPSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAPIFYGDIRRHERVALPFST 168 (538)
Q Consensus 89 ~~~S~eeF~~~y~~~~~PVVIrG~~~~WpA~~kWt~~~~~ldYL~e~~Gd~~V~v~~~~~g~~fy~d~~s~~~~~m~f~e 168 (538)
..++.++|..+++.+++|+|++|.+.+|||.++|. ++||.+..|...|.++++.+ |.+.. ..+.-|++.+
T Consensus 133 ~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~-----l~~l~~va~~rTvpvEvg~~----y~~~~-w~q~l~t~~~ 202 (355)
T KOG2132|consen 133 DRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWS-----LGYLQQVAGNRTVPVEVGST----YADED-WSQNLMTQIK 202 (355)
T ss_pred cchHHHHHHHHhhcCCCceEEecccccchHhhhcc-----hhHHHhcccceeeeeecccc----cchhH-HHhhhHHHhh
Confidence 77899999999999999999999999999999996 99999999998888776533 33322 1223566777
Q ss_pred HHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeeeeccCCccchhhhhchhhHHhhcCCCccccc
Q 009311 169 FIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLET 248 (538)
Q Consensus 169 FLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~q~~i~~~~~~e~~~~p~L~~Di~~P~~l~~ 248 (538)
|+.++.... ..+..|++|+.+++ +.|+++.|+.+|++...
T Consensus 203 g~~R~~~~~---------------------------------p~~~~YlAqh~lfd-------qi~elk~Di~iPDyc~~ 242 (355)
T KOG2132|consen 203 GIKRCILFE---------------------------------PRECLYLAQHHLFD-------QIPELKFDISIPDYCSF 242 (355)
T ss_pred hhhhhhcCC---------------------------------ccccchhhhhhhhc-------cchhhhhccCCCceeec
Confidence 776653210 12578999999998 89999999999987643
Q ss_pred c----cccceEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcc
Q 009311 249 K----KLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324 (538)
Q Consensus 249 ~----~~~~~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f 324 (538)
. +....+.|+|++|++|++|.|++||+.+||.|+|+|+|+||..++.+||...+- ..+|.||+++||+.+||.+
T Consensus 243 ~~f~~~~v~~~~w~GpaGtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~--~~tsqvdvenPdlk~fp~~ 320 (355)
T KOG2132|consen 243 PNFENEVVDINAWIGPAGTVLPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDTYL--LETSQVDVENPDLKAFPKF 320 (355)
T ss_pred CCCCccccceeEEeccCCceeccccccccceeeeeecceEEEEecCcccCCCCCccchh--hcccccccCCCChhhhhHH
Confidence 1 235689999999999999999999999999999999999999999999975432 3489999999999999999
Q ss_pred cccCCccEEEEEcCCCEEecCCCCeEEEeeCCceEEE
Q 009311 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAV 361 (538)
Q Consensus 325 ~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaV 361 (538)
+.++ .+.|+|+|||+||||.-|||.|++.+.++++
T Consensus 321 ~k~~--~l~~lL~pGe~L~iP~kwwhyvrs~d~s~s~ 355 (355)
T KOG2132|consen 321 AKAR--FLDCLLEPGEALFIPPKWWHYVRSLDKSFSV 355 (355)
T ss_pred HHHH--HHHHhcCCchhccccHHHhhhhhhccccccC
Confidence 8885 6899999999999999999999998877653
No 4
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=261.46 Aligned_cols=241 Identities=28% Similarity=0.447 Sum_probs=178.3
Q ss_pred CceeEEeCCCCCCHHHHHHHhhcCCCcEEEecCCCCcccccCCCCCCCChhhHHHHhCCCceEEEeccCCCcccCCcC--
Q 009311 80 LEIRSFEFDQLPSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAPIFYGDIR-- 157 (538)
Q Consensus 80 ~~I~r~~~~~~~S~eeF~~~y~~~~~PVVIrG~~~~WpA~~kWt~~~~~ldYL~e~~Gd~~V~v~~~~~g~~fy~d~~-- 157 (538)
..|.++ +..||+-+|+++|+.+|+|||||.+..+|||.++|++ .+||.+..||..|.|.++++| |+|..
T Consensus 22 ~~v~~l--D~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~----p~Yl~~algd~vvsvaitPng---yadgav~ 92 (437)
T KOG2508|consen 22 VLVNLL--DLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQ----PDYLLSALGDIVVSVAITPNG---YADGAVM 92 (437)
T ss_pred cccccc--cCCCchHHHHHhhhcCCCcEEEecccccCchhhccCc----hHHHHHhccCeEEEEEeCCCC---ccccccc
Confidence 467888 8999999999999999999999999999999999996 579999999999999998887 33311
Q ss_pred cc-ce------eeecHHHHHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeee-eccCCccchhh
Q 009311 158 RH-ER------VALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLA-QAPIMSAENEE 229 (538)
Q Consensus 158 s~-~~------~~m~f~eFLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~-q~~i~~~~~~e 229 (538)
+. +. ++|++++-|..+.++ ......+|+. |.+.+..
T Consensus 93 ~g~e~f~~pae~KlklsevL~vl~~~--------------------------------~~~~~Vly~qkQ~snl~~---- 136 (437)
T KOG2508|consen 93 SGNEMFIKPAEQKLKLSEVLYVLTQY--------------------------------DESNEVLYGQKQNSNLVK---- 136 (437)
T ss_pred cCcceeechhhhhccchhhheehhcc--------------------------------cCCCceeehhhhcccccc----
Confidence 11 11 245555555544322 1123577885 4444442
Q ss_pred hhchhhHHhhc-----CCCcccccccccceEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCc----ccc
Q 009311 230 TVQLETLKEDI-----ATPAFLETKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLY----PMS 300 (538)
Q Consensus 230 ~~~~p~L~~Di-----~~P~~l~~~~~~~~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LY----p~p 300 (538)
.+|.+..|. .+-.-..++.+...|+|||...++|++|.|+|+|++|+|+|.|+|+|+||++.+.|+ |..
T Consensus 137 --elp~la~Dl~~~d~~wa~eafgk~PdavNlWiG~~~avTSlHkDhyENlYaViSGeKhFvlipP~d~~~lp~eiyp~g 214 (437)
T KOG2508|consen 137 --ELPPLATDLLLTDFSWAPEAFGKVPDAVNLWIGKSEAVTSLHKDHYENLYAVISGEKHFVLIPPDDANQLPLEIYPNG 214 (437)
T ss_pred --cccccccccccccccccHHHhCCChhheeeeecccccccccccccccceEEEEeccceEEEeCcccccccceeecCCc
Confidence 455555544 433333446778899999999999999999999999999999999999999987654 433
Q ss_pred ccC---CCC----------------CcccCCCC-CC-----CCCCCCcccccCCccEEEEEcCCCEEecCCCCeEEEeeC
Q 009311 301 VYG---EAS----------------NHSSISLE-NP-----DFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSD 355 (538)
Q Consensus 301 ~~~---~~~----------------~~S~Vd~~-~p-----D~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~ 355 (538)
.|. +.. ..+.++.- .| +..+||.+..-. ++..+.+.+|+++|.|..|.|+|...
T Consensus 215 ~ysy~~e~g~fk~e~~dEe~~~~a~~~~svd~~~s~~~~a~~~~k~~l~~~~~-k~~~~rv~a~~i~~lp~~w~h~~sq~ 293 (437)
T KOG2508|consen 215 LYSYEGEDGPFKSEGLDEEDAAIAKTWFSVDPIGSPKELAVPQEKIPLLEAEY-KPEMDRVLAGQILYLPEDWFHHVSQV 293 (437)
T ss_pred ceeeecCCCceeecccchhhhhhcceeeeecccCCHHHhccchhhCccccccc-cceeeeeeccccccChhhhhhhcccc
Confidence 221 111 01222221 23 567888876432 46789999999999999999999884
Q ss_pred ----CceEEEEEeeCCc
Q 009311 356 ----DLTIAVNFWWRSS 368 (538)
Q Consensus 356 ----~~sIaVN~w~~~~ 368 (538)
+.+|+||+|+...
T Consensus 294 ~gd~~~~Iavn~~~d~~ 310 (437)
T KOG2508|consen 294 GGDPESDIAVNEWYDIE 310 (437)
T ss_pred CCCccceeEEeeecccc
Confidence 7899999999874
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.86 E-value=3.7e-22 Score=202.53 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=156.8
Q ss_pred ceeEEeCCCCCCHHHHHHHhhcCCCcEEEecCCCCcccc----cCCCCCCC--C-----hhhHHHHhCCCceEEEeccCC
Q 009311 81 EIRSFEFDQLPSATQFASQIESSNIPAVFKGCIKDWKAF----SNWNPTEG--G-----LDYLQERLGTSVVEAMLSRTA 149 (538)
Q Consensus 81 ~I~r~~~~~~~S~eeF~~~y~~~~~PVVIrG~~~~WpA~----~kWt~~~~--~-----ldYL~e~~Gd~~V~v~~~~~g 149 (538)
.|+|+- ..-.+++.|.+.|...+.||++.++..+|+++ ..|.+.+. . ..|.+.+..+-.+.|......
T Consensus 29 ~v~r~~-g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~v~~~~~s 107 (427)
T KOG2131|consen 29 CVLRLI-GPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKNVFLCDLS 107 (427)
T ss_pred hhhhhc-ccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCccccccccc
Confidence 466661 24578899999999999999999999999999 45553322 1 235554443332222221110
Q ss_pred CcccCCcCccceeeecHHHHHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeeeeccCCccchhh
Q 009311 150 PIFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEE 229 (538)
Q Consensus 150 ~~fy~d~~s~~~~~m~f~eFLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~q~~i~~~~~~e 229 (538)
. ...+++..+++.+|+..+.+....+... ...+..++..... +..| ...+.+|+.++.+...-...
T Consensus 108 -~----f~~~~~Le~ny~d~~v~~a~~~e~e~~~-l~lad~~~~e~~~----~~~~----~q~p~ly~kDwHL~~~~d~~ 173 (427)
T KOG2131|consen 108 -L----FPDYEYLERNYGDFVVPVANCNEKERYS-LKLADWEFREEQV----QLAC----PQAPSLYGKDWHLYRFLDND 173 (427)
T ss_pred -c----CccHHHHHhhhhhcchhhccccchhhhh-hhhccchhHHHhH----hhhc----CCCccccccchheeeecCcc
Confidence 0 1123445677888887765543221110 0011111111000 0011 12346777766544311111
Q ss_pred h-hchhhHHhhcCCCccccc-ccccceEEEEeCCCCCceeeeccC--CceeEEEEeEEEEEEeCCCCCCCCccccccCCC
Q 009311 230 T-VQLETLKEDIATPAFLET-KKLAAINLWMNNAKSKSSAHYDPH--HNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEA 305 (538)
Q Consensus 230 ~-~~~p~L~~Di~~P~~l~~-~~~~~~~lWiG~~gs~T~lH~D~~--~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~ 305 (538)
. ...|.+..+.-++.+... +.-+....++|++||.|++|-|.+ ..|...|.|+|+|.|+||++...|+.. +|..
T Consensus 174 ~~~~~pd~F~~dwlne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~dr--~gnl 251 (427)
T KOG2131|consen 174 FPYWTPDLFAKDWLNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLADR--YGNL 251 (427)
T ss_pred cccccchhhhhcccchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhhhhhhh--ccCc
Confidence 1 123433333334434322 222235578999999999999998 579999999999999999998777643 2321
Q ss_pred CCcccCCCCCCCCCCCCcccccCCccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCCccc
Q 009311 306 SNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSSIM 370 (538)
Q Consensus 306 ~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~~~~ 370 (538)
. .++..+-+.. ++ .+.++++++|||++|+|+||.|||.|++.|||||.+|.+..+
T Consensus 252 p----~~~~~~~ld~---~~---~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~n 306 (427)
T KOG2131|consen 252 P----LPSWITKLDL---FR---GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATN 306 (427)
T ss_pred C----Cccccccccc---cc---cchhhhhccCCceeeccCccccccccccceeeeccccccccc
Confidence 1 1111111111 11 234789999999999999999999999999999999999654
No 6
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=99.43 E-value=8.7e-13 Score=137.27 Aligned_cols=97 Identities=28% Similarity=0.557 Sum_probs=66.0
Q ss_pred cceEEEEeCCC-CCceeeeccCCceeEEEEeEEEEEEeCCCCC-CCCccccccCCCCCcccCCCCCCCCCCCCcccccCC
Q 009311 252 AAINLWMNNAK-SKSSAHYDPHHNLLCIVAGCKQVVLWPPAAS-PMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGE 329 (538)
Q Consensus 252 ~~~~lWiG~~g-s~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~-~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~ 329 (538)
...|++++++| .+...|+|.++++.+|+.|+|+|.|+++... ...+ +..+ +.....+ .
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~-----------~~~~-----~~~~~~~----~ 173 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLY-----------SDQP-----FKQLEEF----E 173 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSS-----------CE-------TTTCG------S
T ss_pred cceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCccccccc-----------CCCC-----ccccccC----c
Confidence 45899999988 5889999999999999999999999994332 1111 1111 1111111 1
Q ss_pred ccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCCc
Q 009311 330 YSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSS 368 (538)
Q Consensus 330 ~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~~ 368 (538)
...+++|+|||+||||+||||++.+.+.|+.+++.+...
T Consensus 174 ~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~ 212 (319)
T PF08007_consen 174 PVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAP 212 (319)
T ss_dssp TSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCE
T ss_pred eeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCC
Confidence 257899999999999999999999988999999998874
No 7
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.8e-12 Score=132.02 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=82.4
Q ss_pred chhhHHhhcC-CCcccccccccceEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCccc
Q 009311 232 QLETLKEDIA-TPAFLETKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSS 310 (538)
Q Consensus 232 ~~p~L~~Di~-~P~~l~~~~~~~~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~ 310 (538)
....|.+.|. +|.+- .+.+.+-....|.+...|+|.|++++.|..|+|||.+-.+.....+++.+.
T Consensus 102 ~v~~l~~~FrflP~wr----~ddiMIS~a~~GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d--------- 168 (383)
T COG2850 102 EVAALMEPFRFLPDWR----IDDIMISFAAPGGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPD--------- 168 (383)
T ss_pred HHHHHHHHhccCcccc----ccceEEEEecCCCccCccccchheeEEeecccceeecCCcccccCcCCCcc---------
Confidence 3456666665 55443 344555567778889999999999999999999999988876656665321
Q ss_pred CCCCCCCCCCCCcccccCCccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCCc
Q 009311 311 ISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSS 368 (538)
Q Consensus 311 Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~~ 368 (538)
..+..|. + .-++.+++|||+||||++|||+-...+.|+..++-++..
T Consensus 169 ~~~~~~f---~--------~~~d~vlepGDiLYiPp~~~H~gvae~dc~tySvG~r~P 215 (383)
T COG2850 169 LLILAPF---E--------PDIDEVLEPGDILYIPPGFPHYGVAEDDCMTYSVGFRAP 215 (383)
T ss_pred hhhcCCC---C--------chhhhhcCCCceeecCCCCCcCCcccccccceeeeccCC
Confidence 1111111 1 124679999999999999999999998888888877774
No 8
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.09 E-value=2.1e-11 Score=106.89 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=64.3
Q ss_pred EEEeCCCCCceeeeccCC---ceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCc-ccccCCcc
Q 009311 256 LWMNNAKSKSSAHYDPHH---NLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPR-AEHSGEYS 331 (538)
Q Consensus 256 lWiG~~gs~T~lH~D~~~---N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~-f~~a~~~~ 331 (538)
+.||..+|.|++|.|... -++....|.|.|+++||+....+...-........+.. +.......-|. +++..-..
T Consensus 2 ~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~l~~~gi~~ 80 (114)
T PF02373_consen 2 LYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSKESQNCPQF-LDHKNIFVSPEQLKKAGIPV 80 (114)
T ss_dssp EEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHHHHHHSTTG-GCTGGEEEGHHHHHHTTS--
T ss_pred EEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhccccccccc-ccccccccceeeeeccCccc
Confidence 679999999999999862 24667888999999999986544321000000000000 00000000011 22232346
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEEEEee
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWW 365 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~ 365 (538)
+.++++|||++|||+||||+|.|.+.||+++.+|
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred ccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 8999999999999999999999999999988776
No 9
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.5e-08 Score=107.10 Aligned_cols=127 Identities=21% Similarity=0.313 Sum_probs=83.4
Q ss_pred ccceEEEEeCCCC-CceeeeccCCceeEEEEeEEEEEEeCCCCC-CCCccccccCCCCCcccCCCCCCCCCCCCcccccC
Q 009311 251 LAAINLWMNNAKS-KSSAHYDPHHNLLCIVAGCKQVVLWPPAAS-PMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSG 328 (538)
Q Consensus 251 ~~~~~lWiG~~gs-~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~-~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~ 328 (538)
+...|+++-|+|| +-+.|||--+.+..||.|||+|+||.|... ..|+.. .+.|++.-+ +.
T Consensus 316 ~vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~----sS~Nf~eed-----lg--------- 377 (629)
T KOG3706|consen 316 LVGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALV----SSDNFTEED-----LG--------- 377 (629)
T ss_pred ccccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhc----cCCCCChhH-----hC---------
Confidence 4457999998886 778999999999999999999999988764 334321 122333322 21
Q ss_pred CccEEEEEcCCCEEecCCCCeEEEeeC----CceEEEEEeeCCcccchhhhhhHHHHHHHHHHHHHHH---HHHHHHhhC
Q 009311 329 EYSQKVILHAGDALFIPEGWFHQVDSD----DLTIAVNFWWRSSIMSSLSEHMDAYYLRRILRRMMDR---EMNQALAKA 401 (538)
Q Consensus 329 ~~~~e~~L~pGD~LfIP~gWWH~V~s~----~~sIaVN~w~~~~~~~~~~~~~~~~~~r~~l~~l~~~---~~~~~~~~l 401 (538)
+..++.+|+|||+||+|.|..||.... +..|.++..=...| ..++. +++-..+.. +..+.++.|
T Consensus 378 ePV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlStyqq~s~--------anlle-~~ip~av~~a~d~~velRrGL 448 (629)
T KOG3706|consen 378 EPVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLSTYQQNSW--------ANLLE-DTIPGAVFDAADEDVELRRGL 448 (629)
T ss_pred CchHHhhcCCCcEEEecCcceeeccccchhceeEEEeehhhhhhH--------HHHHH-HHHHHHHHHHHhhhhHHhhCC
Confidence 124578999999999999999999873 34444443322211 22222 333333322 346778889
Q ss_pred CHH
Q 009311 402 SSA 404 (538)
Q Consensus 402 p~~ 404 (538)
|+.
T Consensus 449 P~~ 451 (629)
T KOG3706|consen 449 PRG 451 (629)
T ss_pred Chh
Confidence 983
No 10
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=98.52 E-value=1.8e-07 Score=106.52 Aligned_cols=103 Identities=27% Similarity=0.354 Sum_probs=76.4
Q ss_pred cceEEEEeCCCCCceeeeccC--CceeEEEEeEEEEEEeCCCCCCC-CccccccCCCCCcccCCCCCCCCCCCCcccccC
Q 009311 252 AAINLWMNNAKSKSSAHYDPH--HNLLCIVAGCKQVVLWPPAASPM-LYPMSVYGEASNHSSISLENPDFSIYPRAEHSG 328 (538)
Q Consensus 252 ~~~~lWiG~~gs~T~lH~D~~--~N~~~qI~G~Krw~LfPP~~~~~-LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~ 328 (538)
...+.-|+.+++.|.+|.|+. ..|+-++.|.|.|+|++|..... +|.. +. +..+- |-..|+. .-
T Consensus 126 vqkyclmsv~~~Ytdfhidfggtsvwyhil~G~K~f~lI~pt~~nl~~ye~--w~-----~s~~q---~~~ffGd---~V 192 (776)
T KOG1633|consen 126 VQKYCLMSVKDSYTDFHIDFGGTSVWYHILAGEKTFYLIPPTCENLELYEC--WE-----SSTPQ---DEIFFGD---CV 192 (776)
T ss_pred cccceeeeccccccccccCCCCcchhhhhhccccceeeeCCcccchhhhhh--hh-----hcccc---cccccCC---cc
Confidence 345677999999999999996 78999999999999999998753 3321 11 11111 1112332 22
Q ss_pred CccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 329 EYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 329 ~~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
..++.|+|++|++||||+||-|.|..-..|+++-..|-+
T Consensus 193 dkC~~~~l~~g~T~~iPsGwIhAV~Tp~d~l~fgGnflh 231 (776)
T KOG1633|consen 193 DKCYKCILKQGQTLFIPSGWIHAVLTPTDCLVFGGNFLH 231 (776)
T ss_pred ceeEEEEeccCceEecccceeEeeecCcchheeccchhh
Confidence 347899999999999999999999998878877666664
No 11
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=97.74 E-value=1.1e-05 Score=82.53 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=75.1
Q ss_pred EeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCcccccc--CCCCCcccCCCCCCCCCCCCcccccCCccEEEE
Q 009311 258 MNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVY--GEASNHSSISLENPDFSIYPRAEHSGEYSQKVI 335 (538)
Q Consensus 258 iG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~--~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~ 335 (538)
++.....+..|+|-..|+..|+.|.||.++++|... +| .+.+ -..-..-..|+..||+.+||.|..-......++
T Consensus 180 vpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~p~~~--~Y-lAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~~~~w~ 256 (355)
T KOG2132|consen 180 VPVEVGSTYADEDWSQNLMTQIKGIKRCILFEPREC--LY-LAQHHLFDQIPELKFDISIPDYCSFPNFENEVVDINAWI 256 (355)
T ss_pred eeeecccccchhHHHhhhHHHhhhhhhhhcCCcccc--ch-hhhhhhhccchhhhhccCCCceeecCCCCccccceeEEe
Confidence 444455688999999999999999999999999943 33 2211 111123345778899999999987211234556
Q ss_pred EcCCCEEecCCCCeEEEeeC---CceEEEEEeeCC
Q 009311 336 LHAGDALFIPEGWFHQVDSD---DLTIAVNFWWRS 367 (538)
Q Consensus 336 L~pGD~LfIP~gWWH~V~s~---~~sIaVN~w~~~ 367 (538)
..+|++++||..|||.+.+. .-.|-++.|..+
T Consensus 257 GpaGtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s 291 (355)
T KOG2132|consen 257 GPAGTVLPIHMDPWHNILSQVFGRKRIRLYPPEDS 291 (355)
T ss_pred ccCCceeccccccccceeeeeecceEEEEecCccc
Confidence 66699999999999999994 344444555443
No 12
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=97.22 E-value=0.0017 Score=63.39 Aligned_cols=70 Identities=17% Similarity=0.425 Sum_probs=56.3
Q ss_pred CCCCceeeeccC-Cc--eeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEc
Q 009311 261 AKSKSSAHYDPH-HN--LLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILH 337 (538)
Q Consensus 261 ~gs~T~lH~D~~-~N--~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~ 337 (538)
.|+...+|+.+. +- |+-+|.|+=+.+|+.|+- .+.++.++
T Consensus 89 ~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G-------------------------------------~~~v~~~~ 131 (209)
T COG2140 89 PGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG-------------------------------------EARVIAVR 131 (209)
T ss_pred CCcccccccCCCCCcccEEEEEeccEEEEEEcCCC-------------------------------------cEEEEEec
Confidence 367777899997 55 999999999999988651 03578999
Q ss_pred CCCEEecCCCCeEEEeeC--CceEEEEEeeCC
Q 009311 338 AGDALFIPEGWFHQVDSD--DLTIAVNFWWRS 367 (538)
Q Consensus 338 pGD~LfIP~gWWH~V~s~--~~sIaVN~w~~~ 367 (538)
+||++|||++|-|.+.|. +.=+.+|.|+.+
T Consensus 132 ~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~ 163 (209)
T COG2140 132 AGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD 163 (209)
T ss_pred CCcEEEeCCCcceEeecCCCCCEEEEEEEeCC
Confidence 999999999999999994 445556666665
No 13
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=96.83 E-value=0.00085 Score=76.13 Aligned_cols=46 Identities=33% Similarity=0.388 Sum_probs=39.4
Q ss_pred ccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCCcccchhhhhhHHHH
Q 009311 330 YSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSSIMSSLSEHMDAYY 381 (538)
Q Consensus 330 ~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~~~~~~~~~~~~~~~ 381 (538)
.++.+++..||++|||+|--|||+|+--||.|..-|-+. +++...+
T Consensus 797 e~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSP------E~v~ec~ 842 (889)
T KOG1356|consen 797 EPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSP------EHVSECF 842 (889)
T ss_pred CccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCCh------hhHHHHH
Confidence 368999999999999999999999998899998888883 5666553
No 14
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=95.50 E-value=0.047 Score=50.23 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=54.8
Q ss_pred EeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEc
Q 009311 258 MNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILH 337 (538)
Q Consensus 258 iG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~ 337 (538)
|.+ |+....||-..+-+..+++|+=++.++.|.... .+++.. ..++.++
T Consensus 41 i~p-g~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~---------------------------~~~~~~---~~~v~l~ 89 (144)
T PF00190_consen 41 IEP-GGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQ---------------------------EEFRDF---SQKVRLK 89 (144)
T ss_dssp EET-TEEEEEEEESSEEEEEEEESEEEEEEEETTCSS---------------------------SEEEEE---EEEEEEE
T ss_pred hhc-CCccceeEeeeeEEeeeeccceEEEEEecCCcc---------------------------ccceee---eceeeee
Confidence 344 788888998446789999999998888765421 011111 1122699
Q ss_pred CCCEEecCCCCeEEEeeC--CceEEEEEeeCC
Q 009311 338 AGDALFIPEGWFHQVDSD--DLTIAVNFWWRS 367 (538)
Q Consensus 338 pGD~LfIP~gWWH~V~s~--~~sIaVN~w~~~ 367 (538)
+||+++||+||+|.+.|. +..+.+..+...
T Consensus 90 ~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~ 121 (144)
T PF00190_consen 90 AGDVFVVPAGHPHWIINDGDDEALVLIIFDTN 121 (144)
T ss_dssp TTEEEEE-TT-EEEEEECSSSSEEEEEEEEES
T ss_pred cccceeeccceeEEEEcCCCCCCEEEEEEECC
Confidence 999999999999999997 677777666555
No 15
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=95.09 E-value=0.16 Score=49.34 Aligned_cols=67 Identities=13% Similarity=0.339 Sum_probs=48.7
Q ss_pred CceeeeccCC---ceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCCC
Q 009311 264 KSSAHYDPHH---NLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGD 340 (538)
Q Consensus 264 ~T~lH~D~~~---N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD 340 (538)
.|+.|+.+.. =++.+++|+-.++|-.++ | ......++|||
T Consensus 86 mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~-----------G--------------------------~~~~~~v~pGd 128 (191)
T PRK04190 86 MTKGHFHAKADRAEIYYGLKGKGLMLLQDPE-----------G--------------------------EARWIEMEPGT 128 (191)
T ss_pred cCCCeEcCCCCCCEEEEEEeCEEEEEEecCC-----------C--------------------------cEEEEEECCCC
Confidence 4777876542 478899999888873211 0 02468999999
Q ss_pred EEecCCCCeEEEeeC--CceEEEEEeeCC
Q 009311 341 ALFIPEGWFHQVDSD--DLTIAVNFWWRS 367 (538)
Q Consensus 341 ~LfIP~gWWH~V~s~--~~sIaVN~w~~~ 367 (538)
++|||++|-|.+.|. +.-..+++|+..
T Consensus 129 ~v~IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 129 VVYVPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EEEECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 999999999999993 455566766665
No 16
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=94.65 E-value=0.12 Score=49.92 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=48.0
Q ss_pred EeCCCCCceeeeccC-------CceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCc
Q 009311 258 MNNAKSKSSAHYDPH-------HNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEY 330 (538)
Q Consensus 258 iG~~gs~T~lH~D~~-------~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~ 330 (538)
+|..-..|.-||.+. .=++.++.|+=.++|-.++.. ++ ..
T Consensus 62 vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~---------------------~~------------~~ 108 (182)
T PF06560_consen 62 VGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGD---------------------DV------------GD 108 (182)
T ss_dssp ETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS--------------------------------------
T ss_pred cCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCC---------------------cc------------ee
Confidence 566666777787764 126899999999888775420 00 01
Q ss_pred cEEEEEcCCCEEecCCCCeEEEee-CCceEEEEEeeCCcc
Q 009311 331 SQKVILHAGDALFIPEGWFHQVDS-DDLTIAVNFWWRSSI 369 (538)
Q Consensus 331 ~~e~~L~pGD~LfIP~gWWH~V~s-~~~sIaVN~w~~~~~ 369 (538)
.+.+.++|||+++||++|-|.+.| .+..+.+-.||...+
T Consensus 109 ~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~~ 148 (182)
T PF06560_consen 109 VIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPRDA 148 (182)
T ss_dssp EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT-
T ss_pred EEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEecCC
Confidence 456899999999999999999999 455666667777643
No 17
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=94.48 E-value=0.23 Score=39.12 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=43.9
Q ss_pred CCCceeeeccCC-ceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCCC
Q 009311 262 KSKSSAHYDPHH-NLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGD 340 (538)
Q Consensus 262 gs~T~lH~D~~~-N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD 340 (538)
|..++.|.++.. -++.++.|+-.+.+ . .....+++||
T Consensus 8 G~~~~~h~H~~~~e~~~vl~G~~~~~~-~-----------------------------------------~~~~~l~~Gd 45 (71)
T PF07883_consen 8 GGSIPPHRHPGEDEFFYVLSGEGTLTV-D-----------------------------------------GERVELKPGD 45 (71)
T ss_dssp TEEEEEEEESSEEEEEEEEESEEEEEE-T-----------------------------------------TEEEEEETTE
T ss_pred CCCCCCEECCCCCEEEEEEECCEEEEE-c-----------------------------------------cEEeEccCCE
Confidence 568889998876 89999999988763 1 0257999999
Q ss_pred EEecCCCCeEEEeeCC
Q 009311 341 ALFIPEGWFHQVDSDD 356 (538)
Q Consensus 341 ~LfIP~gWWH~V~s~~ 356 (538)
+++||++=+|++.|.+
T Consensus 46 ~~~i~~~~~H~~~n~~ 61 (71)
T PF07883_consen 46 AIYIPPGVPHQVRNPG 61 (71)
T ss_dssp EEEEETTSEEEEEEES
T ss_pred EEEECCCCeEEEEECC
Confidence 9999999999999943
No 18
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=94.43 E-value=0.031 Score=43.15 Aligned_cols=28 Identities=36% Similarity=0.293 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCceeeeccCC--ceeEEEEe
Q 009311 254 INLWMNNAKSKSSAHYDPHH--NLLCIVAG 281 (538)
Q Consensus 254 ~~lWiG~~gs~T~lH~D~~~--N~~~qI~G 281 (538)
.++|||+.+|.|++|+|+++ |++.+..|
T Consensus 28 ~~~~~G~~~s~t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 28 PYLYMGMAGSVTPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred ceEEEeCCCCccceeEcCCCeEEEEEecCC
Confidence 78999999999999999998 77766544
No 19
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.23 E-value=0.43 Score=51.09 Aligned_cols=75 Identities=13% Similarity=0.296 Sum_probs=54.9
Q ss_pred EEEeCCCCCceeeeccC-CceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEE
Q 009311 256 LWMNNAKSKSSAHYDPH-HNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKV 334 (538)
Q Consensus 256 lWiG~~gs~T~lH~D~~-~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~ 334 (538)
+-+.+ |..+.+|+.+. +-|+.++.|+=++.++.++.. ..+.
T Consensus 250 ~~l~P-G~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~-------------------------------------~~~~ 291 (367)
T TIGR03404 250 VTVEP-GAMRELHWHPNADEWQYFIQGQARMTVFAAGGN-------------------------------------ARTF 291 (367)
T ss_pred EEECC-CCccCCeeCcCCCeEEEEEEEEEEEEEEecCCc-------------------------------------EEEE
Confidence 44565 66778999886 569999999999988765310 2356
Q ss_pred EEcCCCEEecCCCCeEEEeeCC-ceEEEEEeeCCc
Q 009311 335 ILHAGDALFIPEGWFHQVDSDD-LTIAVNFWWRSS 368 (538)
Q Consensus 335 ~L~pGD~LfIP~gWWH~V~s~~-~sIaVN~w~~~~ 368 (538)
.+++||++|||.|..|+++|.+ ..+-+=..|.+.
T Consensus 292 ~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~ 326 (367)
T TIGR03404 292 DYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKAD 326 (367)
T ss_pred EECCCCEEEECCCCeEEEEECCCCCEEEEEEECCC
Confidence 8999999999999999999953 334343445553
No 20
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=92.81 E-value=0.52 Score=43.83 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=42.8
Q ss_pred cceEEEE---eCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccC
Q 009311 252 AAINLWM---NNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSG 328 (538)
Q Consensus 252 ~~~~lWi---G~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~ 328 (538)
..+.+|+ ++ |+.|+.|+..++-++.++.|+=...|...+. +||.
T Consensus 42 kevEVwlQTfAP-G~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~---------------------------~~pG----- 88 (167)
T PF02041_consen 42 KEVEVWLQTFAP-GSATPIHRHSCEEVFVVLKGSGTLYLASSHE---------------------------KYPG----- 88 (167)
T ss_dssp SSEEEEEEEE-T-T-B--EEEESS-EEEEEEE--EEEEE--SSS---------------------------SS-------
T ss_pred eeeeEEeeeecC-CCCCCCccccccEEEEEEecceEEEEecccc---------------------------cCCC-----
Confidence 3468885 66 8999999999999999999999887762211 3332
Q ss_pred CccEEEEEcCCCEEecCCCCeEEEeeC
Q 009311 329 EYSQKVILHAGDALFIPEGWFHQVDSD 355 (538)
Q Consensus 329 ~~~~e~~L~pGD~LfIP~gWWH~V~s~ 355 (538)
.++++...|+++++||.+=-|||.|.
T Consensus 89 -~pqef~~~pnSTf~IPvn~~HQv~NT 114 (167)
T PF02041_consen 89 -KPQEFPIFPNSTFHIPVNDAHQVWNT 114 (167)
T ss_dssp -S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred -CceEEEecCCCeEEeCCCCcceeecC
Confidence 25789999999999999999999994
No 21
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=92.13 E-value=1.7 Score=46.50 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=53.2
Q ss_pred eEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEE
Q 009311 254 INLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQK 333 (538)
Q Consensus 254 ~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e 333 (538)
..+-+.+ |...++|.....-|..++.|+=++.+..... ..+.
T Consensus 70 ~~~~l~p-G~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g-------------------------------------~~~~ 111 (367)
T TIGR03404 70 VNMRLEP-GAIRELHWHKEAEWAYVLYGSCRITAVDENG-------------------------------------RNYI 111 (367)
T ss_pred eEEEEcC-CCCCCcccCCCceEEEEEeeEEEEEEEcCCC-------------------------------------cEEE
Confidence 4555666 4456788876667999999999988865310 0123
Q ss_pred EEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 334 VILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 334 ~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
..|++||++|||+|..|...+.+....+=+.|..
T Consensus 112 ~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~ 145 (367)
T TIGR03404 112 DDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDD 145 (367)
T ss_pred eEECCCCEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence 4899999999999999999996544333333443
No 22
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=90.87 E-value=0.84 Score=43.13 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=53.9
Q ss_pred EEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEE
Q 009311 256 LWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVI 335 (538)
Q Consensus 256 lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~ 335 (538)
+-+|+.+.++..|++..+-|+.|+.|.=.+.+.... ....+.
T Consensus 32 ~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g--------------------------------------~~~~v~ 73 (159)
T TIGR03037 32 TVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEEG--------------------------------------KREDVP 73 (159)
T ss_pred EEeCCCCCCcccccCCCceEEEEEcceEEEEEEcCC--------------------------------------cEEEEE
Confidence 336777899999998889999999999766553311 023689
Q ss_pred EcCCCEEecCCCCeEEEeeCCceEEEE
Q 009311 336 LHAGDALFIPEGWFHQVDSDDLTIAVN 362 (538)
Q Consensus 336 L~pGD~LfIP~gWWH~V~s~~~sIaVN 362 (538)
|++||+++||+|--|.....+.++.+-
T Consensus 74 L~eGd~flvP~gvpHsP~r~~~t~~Lv 100 (159)
T TIGR03037 74 IREGDIFLLPPHVPHSPQRPAGSIGLV 100 (159)
T ss_pred ECCCCEEEeCCCCCcccccCCCcEEEE
Confidence 999999999999999998866666653
No 23
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=90.64 E-value=2.4 Score=38.97 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=51.6
Q ss_pred EEEEeCCCCCceeeecc-CCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEE
Q 009311 255 NLWMNNAKSKSSAHYDP-HHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQK 333 (538)
Q Consensus 255 ~lWiG~~gs~T~lH~D~-~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e 333 (538)
.+-|.+ |+..+.|+.+ .+-+..++.|+=.+.+.-+.. . ....
T Consensus 34 ~~~i~p-g~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~--------------------------------~----~~~~ 76 (146)
T smart00835 34 RVNLEP-GGMLPPHYHPRATELLYVVRGEGRVGVVDPNG--------------------------------N----KVYD 76 (146)
T ss_pred EEEecC-CcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC--------------------------------C----eEEE
Confidence 344655 6667788865 356788899998777643211 0 1246
Q ss_pred EEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 334 VILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 334 ~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
..+++||+++||++.+|...|.+..-++-+++..
T Consensus 77 ~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~ 110 (146)
T smart00835 77 ARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNT 110 (146)
T ss_pred EEecCCCEEEECCCCEEEEEcCCCCCEEEEEEec
Confidence 8999999999999999999985433233345544
No 24
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=89.80 E-value=0.8 Score=48.24 Aligned_cols=38 Identities=42% Similarity=0.931 Sum_probs=34.1
Q ss_pred ccEEEEEcCCCEEecCCCCeEEEee-------CCceEEEEEeeCC
Q 009311 330 YSQKVILHAGDALFIPEGWFHQVDS-------DDLTIAVNFWWRS 367 (538)
Q Consensus 330 ~~~e~~L~pGD~LfIP~gWWH~V~s-------~~~sIaVN~w~~~ 367 (538)
-.+.+.+++||++|+|+.|.|.|++ ....|++|+|+..
T Consensus 359 ~~l~v~~~~~~~~~l~~~~~~~~~~~~~ssg~~~v~l~~~y~~~~ 403 (437)
T KOG2508|consen 359 VPLVVDLEPGDMLYLPASWFHEVTSSSASSGGSDVHIAFNYWFHP 403 (437)
T ss_pred eeEEEecccCceeeechhheeeeeccccccCCcceeEEeeccccc
Confidence 4689999999999999999999997 2578999999987
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=89.23 E-value=1.5 Score=42.14 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=55.0
Q ss_pred EEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEE
Q 009311 257 WMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVIL 336 (538)
Q Consensus 257 WiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L 336 (538)
-.|..+.++..|+|+.+-|+-|+.|.=.+.+.... ....+.|
T Consensus 39 vvgGpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g--------------------------------------~~~~v~L 80 (177)
T PRK13264 39 VVGGPNARTDFHYDPGEEFFYQLEGDMYLKVQEDG--------------------------------------KRRDVPI 80 (177)
T ss_pred EEccCCcccccccCCCceEEEEECCeEEEEEEcCC--------------------------------------ceeeEEE
Confidence 36777899999999999999999999776664311 0135899
Q ss_pred cCCCEEecCCCCeEEEeeCCceEEEEE
Q 009311 337 HAGDALFIPEGWFHQVDSDDLTIAVNF 363 (538)
Q Consensus 337 ~pGD~LfIP~gWWH~V~s~~~sIaVN~ 363 (538)
++||+++||+|--|.......++.+-+
T Consensus 81 ~eGd~fllP~gvpHsP~r~~~tv~Lvi 107 (177)
T PRK13264 81 REGEMFLLPPHVPHSPQREAGSIGLVI 107 (177)
T ss_pred CCCCEEEeCCCCCcCCccCCCeEEEEE
Confidence 999999999999999988766766644
No 26
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=88.52 E-value=1.2 Score=47.02 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=48.2
Q ss_pred CCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCC
Q 009311 260 NAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAG 339 (538)
Q Consensus 260 ~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pG 339 (538)
+.|..++.|......+..+|.|.-.++.+. ...+..++|
T Consensus 89 ~pGe~~~~HRht~sAl~~vveG~G~~t~V~-----------------------------------------g~~~~~~~g 127 (335)
T TIGR02272 89 LPGEVAPSHRHTQSALRFIVEGKGAFTAVD-----------------------------------------GERTTMHPG 127 (335)
T ss_pred CCCCCCCccccccceEEEEEEcCceEEEEC-----------------------------------------CEEEeeeCC
Confidence 348889999999999999999986555521 236899999
Q ss_pred CEEecCCCCeEEEeeCCceEE
Q 009311 340 DALFIPEGWFHQVDSDDLTIA 360 (538)
Q Consensus 340 D~LfIP~gWWH~V~s~~~sIa 360 (538)
|++.+|+++||.-.|.+....
T Consensus 128 D~~~tP~w~wH~H~n~~d~~~ 148 (335)
T TIGR02272 128 DFIITPSWTWHDHGNPGDEPM 148 (335)
T ss_pred CEEEeCCCeeEecccCCCCcE
Confidence 999999999999988665543
No 27
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=85.76 E-value=5.8 Score=38.15 Aligned_cols=85 Identities=19% Similarity=0.137 Sum_probs=59.5
Q ss_pred cceEEEEeCCCCCceeeecc---CCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccC
Q 009311 252 AAINLWMNNAKSKSSAHYDP---HHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSG 328 (538)
Q Consensus 252 ~~~~lWiG~~gs~T~lH~D~---~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~ 328 (538)
...|+=++..|+.-.+|+.. ..=+.++++|+=.-+++..... . |.|..
T Consensus 44 ~Q~n~S~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~---------------------S------pTfG~-- 94 (176)
T TIGR01221 44 VQDNHSKSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRN---------------------S------PTFGK-- 94 (176)
T ss_pred ceeEEEEecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCC---------------------c------CCCCe--
Confidence 34666677789999999984 2457889999988888875421 0 11111
Q ss_pred CccEEEEEcC--CCEEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 329 EYSQKVILHA--GDALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 329 ~~~~e~~L~p--GD~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
...++|.+ +-+||||+|.||-..+++....|.|--..
T Consensus 95 --~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~~~ 133 (176)
T TIGR01221 95 --WVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKCTD 133 (176)
T ss_pred --EEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeCCC
Confidence 24567777 66999999999999997776555554333
No 28
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=85.57 E-value=4.9 Score=36.61 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=38.2
Q ss_pred EEE--eCCCCCceeeeccC-CceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccE
Q 009311 256 LWM--NNAKSKSSAHYDPH-HNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQ 332 (538)
Q Consensus 256 lWi--G~~gs~T~lH~D~~-~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~ 332 (538)
.|+ -+.+..-..|.... .-++++++|+=++.+..... ..
T Consensus 35 y~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~--------------------------------------~~ 76 (131)
T PF05523_consen 35 YYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGRE--------------------------------------EE 76 (131)
T ss_dssp EEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS---------------------------------------EE
T ss_pred EEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCC--------------------------------------cE
Confidence 444 34555567888765 56789999999988533110 13
Q ss_pred EEEEcCCC-EEecCCCCeEEEeeCC-ceEEEEEeeCC
Q 009311 333 KVILHAGD-ALFIPEGWFHQVDSDD-LTIAVNFWWRS 367 (538)
Q Consensus 333 e~~L~pGD-~LfIP~gWWH~V~s~~-~sIaVN~w~~~ 367 (538)
+++|...+ .|+||+|+||...+.+ .+|-+. |.+
T Consensus 77 ~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv--~as 111 (131)
T PF05523_consen 77 EFILDEPNKGLYIPPGVWHGIKNFSEDSVLLV--LAS 111 (131)
T ss_dssp EEEE--TTEEEEE-TT-EEEEE---TT-EEEE--EES
T ss_pred EEEECCCCeEEEECCchhhHhhccCCCcEEEE--EcC
Confidence 45665554 8999999999999844 344444 455
No 29
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=85.14 E-value=0.89 Score=41.03 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.9
Q ss_pred EEEEcCCCEEecCCCCeEEEeeCCc
Q 009311 333 KVILHAGDALFIPEGWFHQVDSDDL 357 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~~~ 357 (538)
++.|++||++|||+|=+|.+.|.+.
T Consensus 76 ~~~v~~gd~~~iP~g~~H~~~N~G~ 100 (127)
T COG0662 76 EVEVKAGDSVYIPAGTPHRVRNTGK 100 (127)
T ss_pred EEEecCCCEEEECCCCcEEEEcCCC
Confidence 6899999999999999999999654
No 30
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=84.41 E-value=6.8 Score=35.06 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=49.5
Q ss_pred eEEEEeCCCCCceeeecc-CCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccE
Q 009311 254 INLWMNNAKSKSSAHYDP-HHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQ 332 (538)
Q Consensus 254 ~~lWiG~~gs~T~lH~D~-~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~ 332 (538)
..++-..+|..++.|+-+ ..-...++.|+=++.+- ..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~------------------------------------------g~ 82 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE------------------------------------------GE 82 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec------------------------------------------CC
Confidence 445666779999999998 55778888998776651 01
Q ss_pred EEEEcCCCEEecCCCCeEEEeeCCce
Q 009311 333 KVILHAGDALFIPEGWFHQVDSDDLT 358 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~~~s 358 (538)
..++++||+++||+|=+|.+.+.+.+
T Consensus 83 ~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 83 KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred ceEecCCCEEEECCCCeeeeccCCCC
Confidence 35899999999999999999996555
No 31
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=83.06 E-value=1.2 Score=39.95 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.5
Q ss_pred EEEEcCCCEEecCCCCeEEEeeC
Q 009311 333 KVILHAGDALFIPEGWFHQVDSD 355 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~ 355 (538)
.++..|||.+|||+|--||-.|.
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~ 111 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANL 111 (142)
T ss_pred eEEecCCCeEEcCCCCCCccccc
Confidence 68999999999999999999984
No 32
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=80.42 E-value=17 Score=35.00 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=59.1
Q ss_pred ceEEEEeCCCCCceeeeccCC----ceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccC
Q 009311 253 AINLWMNNAKSKSSAHYDPHH----NLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSG 328 (538)
Q Consensus 253 ~~~lWiG~~gs~T~lH~D~~~----N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~ 328 (538)
..|+-.+..|+.-.+|+.... =+.++++|+=.-+++..... | |.|.+
T Consensus 44 q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~---------------S------------pTfg~-- 94 (176)
T PF00908_consen 44 QDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKG---------------S------------PTFGK-- 94 (176)
T ss_dssp EEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTT---------------S------------TTTT---
T ss_pred ceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCC---------------C------------CCCCE--
Confidence 356777777999999998763 47888999988887753211 0 12222
Q ss_pred CccEEEEEcCCC--EEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 329 EYSQKVILHAGD--ALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 329 ~~~~e~~L~pGD--~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
...++|.+++ +||||+|.+|-..+++....|.|.-..
T Consensus 95 --~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~ 133 (176)
T PF00908_consen 95 --WVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTN 133 (176)
T ss_dssp --EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEESS
T ss_pred --EEEEEeCccccCEEEeCCcceeeEEeccCceEEEEecCC
Confidence 3578888886 799999999999998877666665444
No 33
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=79.80 E-value=10 Score=37.22 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=49.8
Q ss_pred eEEEE--eCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCcc
Q 009311 254 INLWM--NNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYS 331 (538)
Q Consensus 254 ~~lWi--G~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~ 331 (538)
.+.|+ -..|..-..|+.+. +.|+|.=.+.+ |+.....-+..|... ..+ ..+. ..|..+......
T Consensus 96 ~~~W~ni~~~Gg~h~~H~Hp~----~~lSgvyYl~~-p~~~g~~~f~~p~~~-----~~~--~~~~--~~~~~~~~~~~~ 161 (201)
T TIGR02466 96 QKAWVNILPQGGTHSPHLHPG----SVISGTYYVQT-PENCGAIKFEDPRLD-----DMM--AAPM--RIPNAKRAVQRF 161 (201)
T ss_pred eeEeEEEcCCCCccCceECCC----ceEEEEEEEeC-CCCCCceeEecCcch-----hhh--cccc--ccCccccccCcc
Confidence 56884 55677778888874 56677655554 433222111111000 000 0000 001111111112
Q ss_pred EEEEEcCCCEEecCCCCeEEEee---CCceEEEEEe
Q 009311 332 QKVILHAGDALFIPEGWFHQVDS---DDLTIAVNFW 364 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s---~~~sIaVN~w 364 (538)
+.+.-++|++|+.|+.-||.|.. .+.-|+|+|+
T Consensus 162 ~~v~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 162 VYVPPQEGRVLLFESWLRHEVPPNESEEERISVSFN 197 (201)
T ss_pred EEECCCCCeEEEECCCCceecCCCCCCCCEEEEEEe
Confidence 34556999999999999999986 3444554443
No 34
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=78.99 E-value=16 Score=35.01 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=62.7
Q ss_pred cceEEEEeCCCCCceeeeccCC--ceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCC
Q 009311 252 AAINLWMNNAKSKSSAHYDPHH--NLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGE 329 (538)
Q Consensus 252 ~~~~lWiG~~gs~T~lH~D~~~--N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~ 329 (538)
...|+-++.+|+.-.+||..-. =+.++|+|+=..+++.-... .| .| ..
T Consensus 45 ~Q~n~S~S~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~---------------------Sp---Ty---g~--- 94 (173)
T COG1898 45 VQDNHSFSYPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKD---------------------SP---TY---GK--- 94 (173)
T ss_pred ccceEEEecCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCC---------------------CC---Cc---ce---
Confidence 3467777888999999999864 36888899888888763321 11 12 11
Q ss_pred ccEEEEEcCC--CEEecCCCCeEEEeeCCceEEEEEeeCCcc
Q 009311 330 YSQKVILHAG--DALFIPEGWFHQVDSDDLTIAVNFWWRSSI 369 (538)
Q Consensus 330 ~~~e~~L~pG--D~LfIP~gWWH~V~s~~~sIaVN~w~~~~~ 369 (538)
...++|.+- .+|+||+|+.|-..+++.+..|.|+-...+
T Consensus 95 -~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~~Y 135 (173)
T COG1898 95 -WVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTEEY 135 (173)
T ss_pred -EEEEEecCCCceEEEeCCcccceeEEccCceEEEEEeccee
Confidence 234666655 899999999999999888888888766543
No 35
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=77.99 E-value=9.8 Score=35.58 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=45.9
Q ss_pred eEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEE
Q 009311 254 INLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQK 333 (538)
Q Consensus 254 ~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e 333 (538)
+-+.+|+..+++-.|+|..+=|+-|+.|.=...+.... ....
T Consensus 35 ~VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g--------------------------------------~~kd 76 (151)
T PF06052_consen 35 IVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDG--------------------------------------KFKD 76 (151)
T ss_dssp EEEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEETT--------------------------------------EEEE
T ss_pred EEEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeCC--------------------------------------ceEE
Confidence 44557888999999999999999999998766654321 0236
Q ss_pred EEEcCCCEEecCCCCeEEEeeCCceEEE
Q 009311 334 VILHAGDALFIPEGWFHQVDSDDLTIAV 361 (538)
Q Consensus 334 ~~L~pGD~LfIP~gWWH~V~s~~~sIaV 361 (538)
+.+++||+.++|++--|.-.-...||.+
T Consensus 77 i~I~EGe~fLLP~~vpHsP~R~~~tiGL 104 (151)
T PF06052_consen 77 IPIREGEMFLLPANVPHSPQRPADTIGL 104 (151)
T ss_dssp EEE-TTEEEEE-TT--EEEEE-TT-EEE
T ss_pred EEeCCCcEEecCCCCCCCCcCCCCcEEE
Confidence 8999999999999999998876666664
No 36
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=73.58 E-value=6 Score=35.83 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=24.8
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEE
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAV 361 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaV 361 (538)
.+..|+|||++|+|++=.|+..|.+....+
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l 104 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHYLRAGEDMRLV 104 (125)
T ss_pred EEEEeCCCeEEEECCCCcEEEEcCCCEEEE
Confidence 367999999999999999999997544433
No 37
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=72.58 E-value=31 Score=29.57 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=38.7
Q ss_pred CCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCCCE
Q 009311 262 KSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDA 341 (538)
Q Consensus 262 gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD~ 341 (538)
+...+.|...+..+..++.|.-.+.+ + ..+..++|||+
T Consensus 13 ~~~~~~h~h~~~~i~~v~~G~~~~~~---------------~---------------------------~~~~~l~~g~~ 50 (136)
T PF02311_consen 13 NFEFPPHWHDFYEIIYVLSGEGTLHI---------------D---------------------------GQEYPLKPGDL 50 (136)
T ss_dssp T-SEEEETT-SEEEEEEEEE-EEEEE---------------T---------------------------TEEEEE-TT-E
T ss_pred CCccCCEECCCEEEEEEeCCEEEEEE---------------C---------------------------CEEEEEECCEE
Confidence 44556687777788888888877543 0 13579999999
Q ss_pred EecCCCCeEEEeeCC--ceEEEEEeeCC
Q 009311 342 LFIPEGWFHQVDSDD--LTIAVNFWWRS 367 (538)
Q Consensus 342 LfIP~gWWH~V~s~~--~sIaVN~w~~~ 367 (538)
++||++=.|.....+ .......-+..
T Consensus 51 ~li~p~~~H~~~~~~~~~~~~~~i~~~~ 78 (136)
T PF02311_consen 51 FLIPPGQPHSYYPDSNEPWEYYWIYFSP 78 (136)
T ss_dssp EEE-TTS-EEEEE-TTSEEEEEEEEE--
T ss_pred EEecCCccEEEecCCCCCEEEEEEEECH
Confidence 999999999999865 44444444444
No 38
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=69.47 E-value=2.8 Score=34.24 Aligned_cols=16 Identities=56% Similarity=1.311 Sum_probs=14.1
Q ss_pred EEEEcCCCEEecCCCC
Q 009311 333 KVILHAGDALFIPEGW 348 (538)
Q Consensus 333 e~~L~pGD~LfIP~gW 348 (538)
...++|||++|+|.||
T Consensus 45 ~~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGW 60 (74)
T ss_dssp EEEEETTEEEEE-TTE
T ss_pred EEEEcCCcEEEECCCC
Confidence 5799999999999999
No 39
>PLN00212 glutelin; Provisional
Probab=67.14 E-value=24 Score=39.41 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=51.5
Q ss_pred CCCceeeeccC-CceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCCC
Q 009311 262 KSKSSAHYDPH-HNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGD 340 (538)
Q Consensus 262 gs~T~lH~D~~-~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD 340 (538)
|+..+.|+.+. +.+..++.|+=++-++.+.- . ..+...|++||
T Consensus 358 gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g--------------------------------~----~vf~~~L~~Gd 401 (493)
T PLN00212 358 NALLSPFWNVNAHSVVYITQGRARVQVVSNNG--------------------------------K----TVFNGVLRPGQ 401 (493)
T ss_pred CcccCCeecCCCCEEEEEeecceEEEEEcCCC--------------------------------C----EEEEEEEcCCC
Confidence 67788899887 66888889988888875320 0 12568999999
Q ss_pred EEecCCCCeEEEeeCCceEEEEEee
Q 009311 341 ALFIPEGWFHQVDSDDLTIAVNFWW 365 (538)
Q Consensus 341 ~LfIP~gWWH~V~s~~~sIaVN~w~ 365 (538)
++.||.|..|...+.....-++..-
T Consensus 402 vfVVPqg~~v~~~A~~egfe~v~F~ 426 (493)
T PLN00212 402 LLIIPQHYAVLKKAEREGCQYIAFK 426 (493)
T ss_pred EEEECCCCeEEEeecCCceEEEEee
Confidence 9999999999988876666555443
No 40
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=63.66 E-value=5.3 Score=35.87 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=16.6
Q ss_pred EEEEEcCCCEEecCCCCeE
Q 009311 332 QKVILHAGDALFIPEGWFH 350 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH 350 (538)
..+.++|||.+|+|+||+=
T Consensus 82 e~v~~~aGD~~~~~~G~~g 100 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFKG 100 (116)
T ss_pred eEEEEcCCCEEEECCCCeE
Confidence 3579999999999999964
No 41
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=62.34 E-value=11 Score=35.99 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=27.5
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeC
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWR 366 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~ 366 (538)
....|++||++|+|++=.|...|.+..-+.-+|+.
T Consensus 146 ~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 146 QDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH 180 (185)
T ss_pred EEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEe
Confidence 35799999999999999999999655544445543
No 42
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=62.29 E-value=8.1 Score=36.66 Aligned_cols=27 Identities=19% Similarity=0.536 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCEEecCCCCeEEEeeCC
Q 009311 330 YSQKVILHAGDALFIPEGWFHQVDSDD 356 (538)
Q Consensus 330 ~~~e~~L~pGD~LfIP~gWWH~V~s~~ 356 (538)
..+.+-++.||.|+||+|-+|.....+
T Consensus 114 ~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 114 QWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred CEEEEEEecCCEEEecCcceeeeecCc
Confidence 368899999999999999999988743
No 43
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=60.30 E-value=12 Score=32.06 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=22.0
Q ss_pred cEEEEEcCCCEEecCCCCeEEEee---CCceEEEEE
Q 009311 331 SQKVILHAGDALFIPEGWFHQVDS---DDLTIAVNF 363 (538)
Q Consensus 331 ~~e~~L~pGD~LfIP~gWWH~V~s---~~~sIaVN~ 363 (538)
...+..++||+|+.|+.-+|.|.. .+.=|+|+|
T Consensus 65 ~~~~~p~~G~lvlFPs~l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 65 YYIVEPEEGDLVLFPSWLWHGVPPNNSDEERISISF 100 (101)
T ss_dssp EEEE---TTEEEEEETTSEEEE----SSS-EEEEEE
T ss_pred eEEeCCCCCEEEEeCCCCEEeccCcCCCCCEEEEEc
Confidence 457889999999999999999986 345666665
No 44
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=59.80 E-value=11 Score=35.41 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=21.6
Q ss_pred EEEEcCCCEEecCCCCeEEEeeCC
Q 009311 333 KVILHAGDALFIPEGWFHQVDSDD 356 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~~ 356 (538)
...+.+||.+|||.|-.|++.|.+
T Consensus 103 ~~~~~~g~sv~Ip~g~~H~i~n~g 126 (151)
T PF01050_consen 103 EFTLKEGDSVYIPRGAKHRIENPG 126 (151)
T ss_pred EEEEcCCCEEEECCCCEEEEECCC
Confidence 568999999999999999999954
No 45
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=58.35 E-value=54 Score=27.60 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=36.7
Q ss_pred eeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCCCEEecCCCCeEEEee
Q 009311 275 LLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDS 354 (538)
Q Consensus 275 ~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s 354 (538)
.++++.|+=+|+.+.+... . ...++.+.+|+.-+||+.-||.|..
T Consensus 28 ~l~Vl~G~L~f~~~~~~~~---------------------------------~--~~~~~~~~~~~~~~i~Pq~wH~V~p 72 (82)
T PF09313_consen 28 KLRVLEGELKFYGLDEEGE---------------------------------E--PEEEVFIPAGQPPVIEPQQWHRVEP 72 (82)
T ss_dssp EEEEEESEEEEEEESSTT----------------------------------S--ESEEEEEETTEEEEE-TT-EEEEEE
T ss_pred EEEEEeeEEEEEEECCCCC---------------------------------c--eeEEEEeCCCCCceeCCCceEEEEE
Confidence 4789999999999886421 0 1257899999999999999999998
Q ss_pred CCceE
Q 009311 355 DDLTI 359 (538)
Q Consensus 355 ~~~sI 359 (538)
.+.-+
T Consensus 73 ~s~D~ 77 (82)
T PF09313_consen 73 LSDDL 77 (82)
T ss_dssp SSTT-
T ss_pred CCCCE
Confidence 65433
No 46
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=56.99 E-value=21 Score=35.89 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeC
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSD 355 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~ 355 (538)
.+.+++|||++|||+|=.|+-.+.
T Consensus 193 ~t~~l~pGDvlfIPkGs~~hf~tp 216 (233)
T PRK15457 193 ETMIAKAGDVMFIPKGSSIEFGTP 216 (233)
T ss_pred EEEEeCCCcEEEECCCCeEEecCC
Confidence 467999999999999999666543
No 47
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=56.93 E-value=14 Score=37.53 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=30.7
Q ss_pred EEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCCcc
Q 009311 333 KVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSSI 369 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~~~ 369 (538)
..+|++||.+|+|++=-|...|.+..-+.=+|++.++
T Consensus 99 ~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y 135 (260)
T TIGR03214 99 THELREGGYAYLPPGSKWTLANAQAEDARFFLYKKRY 135 (260)
T ss_pred EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeee
Confidence 4699999999999999999999665556667777655
No 48
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=56.58 E-value=28 Score=34.83 Aligned_cols=37 Identities=32% Similarity=0.579 Sum_probs=33.2
Q ss_pred EEEEEcCCCEEecCCCCeEEEee--CCceEEEEEeeCCc
Q 009311 332 QKVILHAGDALFIPEGWFHQVDS--DDLTIAVNFWWRSS 368 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s--~~~sIaVN~w~~~~ 368 (538)
..+.+.+|++|+.|+.-+|.|.. .+.-.++++|.++.
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~S~ 179 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQSL 179 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeeccCccEEEEEecHHHH
Confidence 46889999999999999999997 57889999999984
No 49
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=55.28 E-value=12 Score=38.09 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=23.3
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCc
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDL 357 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~ 357 (538)
-...+++||++|||++--|+..|.+.
T Consensus 218 ~~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 218 NWVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred EEEEecCCCEEEECCCCCEEEEecCC
Confidence 46899999999999999999999654
No 50
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=53.18 E-value=31 Score=32.57 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=24.1
Q ss_pred cEEEEEcCCCEEecCCCCeEEEee-CCceEEEEEeeCC
Q 009311 331 SQKVILHAGDALFIPEGWFHQVDS-DDLTIAVNFWWRS 367 (538)
Q Consensus 331 ~~e~~L~pGD~LfIP~gWWH~V~s-~~~sIaVN~w~~~ 367 (538)
.+.+.+++||.|.||+|-+|...- ....|.+=-.|..
T Consensus 114 wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 114 WIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp EEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS
T ss_pred EEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC
Confidence 356999999999999999999986 3344444333443
No 51
>PRK13502 transcriptional activator RhaR; Provisional
Probab=53.18 E-value=48 Score=33.31 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=25.3
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEEEEee
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWW 365 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~ 365 (538)
.+..+.|||+++||++=.|.....+.....++.|
T Consensus 56 ~~~~l~~g~l~li~~~~~H~~~~~~~~~~~~~~~ 89 (282)
T PRK13502 56 RPYRITRGDLFYIRAEDKHSYTSVNDLVLQNIIY 89 (282)
T ss_pred EEEeecCCcEEEECCCCcccccccCCceEEEEEe
Confidence 3579999999999999999987744444344433
No 52
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=51.90 E-value=15 Score=39.81 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.8
Q ss_pred EEEEcCCCEEecCCCCeEEEeeCCceEEE
Q 009311 333 KVILHAGDALFIPEGWFHQVDSDDLTIAV 361 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~~~sIaV 361 (538)
.+.|+|||++|||+|=-|...+.. +|=|
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G~-~iEi 265 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQGV-ALEV 265 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCCe-EEEE
Confidence 689999999999999999998754 4444
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=50.10 E-value=12 Score=35.30 Aligned_cols=17 Identities=47% Similarity=0.835 Sum_probs=12.6
Q ss_pred EEEEEcCCCEEecCCCC
Q 009311 332 QKVILHAGDALFIPEGW 348 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gW 348 (538)
...+.+|||+||||.|=
T Consensus 113 ~~~~A~~GDvi~iPkGs 129 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGS 129 (152)
T ss_dssp EEEEEETT-EEEE-TT-
T ss_pred EEEEEcCCcEEEECCCC
Confidence 46899999999999985
No 54
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.58 E-value=36 Score=35.37 Aligned_cols=51 Identities=25% Similarity=0.407 Sum_probs=37.9
Q ss_pred CCCCCCCCCCcccccCCccEEEEEcCCCEEecCCCCeEEEeeC---CceEEEEEeeCCc
Q 009311 313 LENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSD---DLTIAVNFWWRSS 368 (538)
Q Consensus 313 ~~~pD~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~---~~sIaVN~w~~~~ 368 (538)
+..||.+.|++-. ...+.|++||+||.=..-||..... -.-+|+++.|...
T Consensus 179 ~~r~d~~~y~~~~-----~~pv~lekGDallF~~~L~HaA~aNrT~~~R~A~~~~~~~~ 232 (299)
T COG5285 179 PERPDHETYLERN-----AVPVELEKGDALLFNGSLWHAAGANRTSADRVALTLQFTVS 232 (299)
T ss_pred CCCCCccchhhhc-----ceeeeecCCCEEEEcchhhhhhhcCCCCcccceEEEEEeec
Confidence 6677777675421 3578999999999999999998762 3456777777764
No 55
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=48.09 E-value=72 Score=33.88 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=48.2
Q ss_pred EeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEc
Q 009311 258 MNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILH 337 (538)
Q Consensus 258 iG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~ 337 (538)
+-++|..|..|......++++|.|+=+.++ + ...+..+
T Consensus 256 ~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i------------------------g------------------~~~~~W~ 293 (335)
T TIGR02272 256 LLPKGFRTATYRSTDATVFCVVEGRGQVRI------------------------G------------------DAVFRFS 293 (335)
T ss_pred ccCCCCCCCCccccccEEEEEEeCeEEEEE------------------------C------------------CEEEEec
Confidence 455678888888888888999988766544 0 1357899
Q ss_pred CCCEEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 338 AGDALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 338 pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
+||++.||+.-+|+-.+.+. ++=|++..
T Consensus 294 ~gD~f~vPsW~~~~h~a~~d--a~Lf~~~D 321 (335)
T TIGR02272 294 PKDVFVVPSWHPVRFEASDD--AVLFSFSD 321 (335)
T ss_pred CCCEEEECCCCcEecccCCC--eEEEEecC
Confidence 99999999977777666655 44555555
No 56
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=42.78 E-value=91 Score=31.20 Aligned_cols=90 Identities=11% Similarity=0.194 Sum_probs=46.7
Q ss_pred EEEeCCCCCceeeeccC--CceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEE
Q 009311 256 LWMNNAKSKSSAHYDPH--HNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQK 333 (538)
Q Consensus 256 lWiG~~gs~T~lH~D~~--~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e 333 (538)
+-|...+..||+|+... +.+.+-=-|.=.+.||-......+- ..+.|.+. .|-.+ +.. ...-+
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~---------~~~~v~V~-~DG~~----~t~-~aG~~ 155 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELD---------ADTDVTVP-VDGIR----RTV-PAGTQ 155 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB----------SS-EEEE-ETTEE----EEE--TT-E
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccc---------cCCCeEEe-cCCcE----EEe-cCCce
Confidence 44666789999999886 5566655566667777654321111 11222110 11111 011 12457
Q ss_pred EEEcCCCEEecCCCCeEEEeeCCceEE
Q 009311 334 VILHAGDALFIPEGWFHQVDSDDLTIA 360 (538)
Q Consensus 334 ~~L~pGD~LfIP~gWWH~V~s~~~sIa 360 (538)
++|.||+-|-||+|-||.-...+..+-
T Consensus 156 l~L~PGESiTL~Pg~yH~Fw~e~g~vL 182 (225)
T PF07385_consen 156 LRLNPGESITLPPGIYHWFWGEGGDVL 182 (225)
T ss_dssp EEE-TT-EEEE-TTEEEEEEE-TTSEE
T ss_pred EEeCCCCeEeeCCCCeeeEEecCCCEE
Confidence 999999999999999999988544443
No 57
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=41.88 E-value=5.9 Score=45.09 Aligned_cols=170 Identities=12% Similarity=0.105 Sum_probs=97.4
Q ss_pred cceEEEEeCCCCCceeeeccC--CceeEEEEeE-EEEEEeCCCCCCCCccccc--c-CCCCCcc-----cCCCCCCCCCC
Q 009311 252 AAINLWMNNAKSKSSAHYDPH--HNLLCIVAGC-KQVVLWPPAASPMLYPMSV--Y-GEASNHS-----SISLENPDFSI 320 (538)
Q Consensus 252 ~~~~lWiG~~gs~T~lH~D~~--~N~~~qI~G~-Krw~LfPP~~~~~LYp~p~--~-~~~~~~S-----~Vd~~~pD~~k 320 (538)
...+|++|-=.|.=++|.+-. +.++..-.|. |.|+-+||++...++.... . ++..+.. ..-+..|++
T Consensus 173 Nt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK~~LiSP~~-- 250 (690)
T KOG0958|consen 173 NTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHKMTLISPSV-- 250 (690)
T ss_pred CccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhcccccCHHH--
Confidence 346788888889999999764 5777777776 9999999999876654311 0 0111000 011111221
Q ss_pred CCcccccCCccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 009311 321 YPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSSIMSSLSEHMDAYYLRRILRRMMDREMNQALAK 400 (538)
Q Consensus 321 yP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~~~ 400 (538)
+++.--....+++++||.|.-=++=+|.--|.+++.|=++.|....-.... -.+... ....+-+.-.++...+.
T Consensus 251 ---LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~Yg--K~a~~C-~C~~d~vkism~~fvr~ 324 (690)
T KOG0958|consen 251 ---LKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYG--KQALLC-SCRSDSVKISMDPFVRS 324 (690)
T ss_pred ---HHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhc--cccccc-ccccceeeeechhhhhh
Confidence 111111245899999999998788899999999999988888874211111 000100 11111111112333333
Q ss_pred CCHHHHHHHHhhcceeccCCCCCccccccc
Q 009311 401 ASSADRERLKRHACEIHTNGELDSMEHDLD 430 (538)
Q Consensus 401 lp~~~r~~w~~~~~~~~~~~~~~~~~h~~~ 430 (538)
.=..-.+-|+..-+.|+++... +.-|.+.
T Consensus 325 ~qPery~~wk~g~d~~l~d~~~-p~~~~~~ 353 (690)
T KOG0958|consen 325 FQPERYELWKTGQDNYLHDHTE-PTPHDSG 353 (690)
T ss_pred cCcchhhhhccCccccccCCCC-CCccccc
Confidence 3333456788877778877543 4444333
No 58
>PRK11171 hypothetical protein; Provisional
Probab=41.81 E-value=38 Score=34.52 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=28.1
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCCc
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSS 368 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~~ 368 (538)
.+.+|++||++|+|++=-|+..|.+..-+.=.|...+
T Consensus 101 ~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~ 137 (266)
T PRK11171 101 KTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRKR 137 (266)
T ss_pred EEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEcC
Confidence 3679999999999999999999955444444455443
No 59
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=41.16 E-value=15 Score=34.58 Aligned_cols=17 Identities=59% Similarity=1.167 Sum_probs=14.9
Q ss_pred EEEEcCCCEEecCCCCe
Q 009311 333 KVILHAGDALFIPEGWF 349 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWW 349 (538)
...|+|||+||||..|+
T Consensus 149 n~~L~~gD~I~Vp~~~f 165 (165)
T TIGR03027 149 NVELKPGDVLIIPESWF 165 (165)
T ss_pred CceeCCCCEEEEecccC
Confidence 46899999999999875
No 60
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=39.05 E-value=19 Score=33.76 Aligned_cols=16 Identities=56% Similarity=0.928 Sum_probs=14.3
Q ss_pred EEEEcCCCEEecCCCC
Q 009311 333 KVILHAGDALFIPEGW 348 (538)
Q Consensus 333 e~~L~pGD~LfIP~gW 348 (538)
.++-+|||++|||.|=
T Consensus 137 tv~a~aGDvifiPKgs 152 (176)
T COG4766 137 TVIAGAGDVIFIPKGS 152 (176)
T ss_pred eEecCCCcEEEecCCC
Confidence 6788999999999984
No 61
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=37.76 E-value=35 Score=28.57 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=25.3
Q ss_pred EcCCCEEecCC-CCeEEEeeC---CceEEEEEee
Q 009311 336 LHAGDALFIPE-GWFHQVDSD---DLTIAVNFWW 365 (538)
Q Consensus 336 L~pGD~LfIP~-gWWH~V~s~---~~sIaVN~w~ 365 (538)
-++|++++.|+ ..||.|... ..-++|++||
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~~~ 99 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSLTFWF 99 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEEEEEE
Confidence 89999999999 999999874 5677888887
No 62
>PLN02288 mannose-6-phosphate isomerase
Probab=37.58 E-value=24 Score=38.25 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEcCCCEEecCCCCeEEEeeC
Q 009311 333 KVILHAGDALFIPEGWFHQVDSD 355 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~ 355 (538)
.+.|+|||+||+|+|=-|.-.+.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G 274 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSG 274 (394)
T ss_pred eEecCCCCEEEecCCCCceecCC
Confidence 58999999999999999998873
No 63
>PRK11171 hypothetical protein; Provisional
Probab=37.50 E-value=48 Score=33.79 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=30.1
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
.+..|++||+|++|++=-|...|.+..-+.=+++++
T Consensus 223 ~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~ 258 (266)
T PRK11171 223 DWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKD 258 (266)
T ss_pred EEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcc
Confidence 467899999999999999999997666666666666
No 64
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=37.37 E-value=33 Score=36.02 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEcCCCEEecCCCCeEEEeeC
Q 009311 333 KVILHAGDALFIPEGWFHQVDSD 355 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~ 355 (538)
.+.|+|||++|+|+|=-|.....
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred EEecCCCCEEEecCCCceeeccc
Confidence 68999999999999999998764
No 65
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=34.98 E-value=46 Score=36.79 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=22.9
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCc
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDL 357 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~ 357 (538)
.+..|++||++|||++=-|+..|.+.
T Consensus 415 ~~~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 415 ETLLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 46789999999999999999999543
No 66
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=34.43 E-value=19 Score=37.28 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEEcCCCEEecCCCCeEEE
Q 009311 332 QKVILHAGDALFIPEGWFHQV 352 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V 352 (538)
-.+.++|||++|||+|=-|.-
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 368999999999999999994
No 67
>PF15138 Syncollin: Syncollin
Probab=33.39 E-value=46 Score=29.34 Aligned_cols=37 Identities=24% Similarity=0.619 Sum_probs=30.0
Q ss_pred cEEEEEcCCCE-EecCCCCeEEEee--CCceEEEEEeeCC
Q 009311 331 SQKVILHAGDA-LFIPEGWFHQVDS--DDLTIAVNFWWRS 367 (538)
Q Consensus 331 ~~e~~L~pGD~-LfIP~gWWH~V~s--~~~sIaVN~w~~~ 367 (538)
.-+..++|||= =|+|++|=|.+.| ...-..++.|=..
T Consensus 34 G~~l~v~pg~DlPylPs~w~n~iSSlvV~~RCeLtVWS~~ 73 (112)
T PF15138_consen 34 GAELSVEPGDDLPYLPSGWANKISSLVVAPRCELTVWSRS 73 (112)
T ss_pred CcEEeecCCCCCCcCCccccCeeeeEEEcCceEEEEEecc
Confidence 45789999965 4999999999998 4667778888765
No 68
>PLN00212 glutelin; Provisional
Probab=33.26 E-value=3e+02 Score=30.90 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=53.8
Q ss_pred eEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEE
Q 009311 254 INLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQK 333 (538)
Q Consensus 254 ~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e 333 (538)
..+=|.+ ++....||-...-+..++.|+=.+-++-|.... -|-.. +......+. ..-.++++-. --.
T Consensus 83 ~R~~i~p-~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpe-T~~~~-~~~~~~~~~--------~~~~~~~d~h--qkv 149 (493)
T PLN00212 83 IRRVIEP-QGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPA-TYQQQ-FQQFLTEGQ--------SQSQKFRDEH--QKI 149 (493)
T ss_pred EEEEecC-CcccCccccCCCeEEEEEeCeEEEEEEeCCCcc-hhhhh-ccccccccc--------cccccccccc--ccc
Confidence 3344666 455555665557788999999999998775432 12110 000000000 1112223221 124
Q ss_pred EEEcCCCEEecCCCCeEEEeeCCce
Q 009311 334 VILHAGDALFIPEGWFHQVDSDDLT 358 (538)
Q Consensus 334 ~~L~pGD~LfIP~gWWH~V~s~~~s 358 (538)
-.+++||++.||+|--|...|.+.+
T Consensus 150 ~~lr~GDViaiPaG~~hw~yN~Gd~ 174 (493)
T PLN00212 150 HQFRQGDVVALPAGVAHWFYNDGDA 174 (493)
T ss_pred eEeccCCEEEECCCCeEEEEeCCCC
Confidence 6899999999999999999996544
No 69
>PRK13501 transcriptional activator RhaR; Provisional
Probab=32.03 E-value=55 Score=33.20 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.6
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeC
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWR 366 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~ 366 (538)
....+++||++|||++=.|++.+.+.....++.|.
T Consensus 56 ~~~~l~~g~~~~I~p~~~H~~~~~~~~~~~~~~~~ 90 (290)
T PRK13501 56 HPYRITCGDVFYIQAADHHSYESVHDLVLDNIIYC 90 (290)
T ss_pred eeeeecCCeEEEEcCCCcccccccCCeEEEEEEec
Confidence 35789999999999999999887544333333443
No 70
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=29.77 E-value=2.3e+02 Score=26.95 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=46.5
Q ss_pred CCCCceeeeccC-CceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCC
Q 009311 261 AKSKSSAHYDPH-HNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAG 339 (538)
Q Consensus 261 ~gs~T~lH~D~~-~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pG 339 (538)
.|..|+.|=... .-+..++.|.=+-..|-.... ...|... ......+.+|
T Consensus 84 pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~-------------------------~~~~~~~----~~~~~~~~~g 134 (175)
T PF05995_consen 84 PGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDD-------------------------GGAPLEL----VGRERLLPGG 134 (175)
T ss_dssp TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTS-------------------------SS-EEEE----CEEEEEETTT
T ss_pred CCCcCCCCCCCCceEEEEEecceEEEEEeccCCc-------------------------ccCcccc----cCceEecCCC
Confidence 489999997654 567889999977666543221 0111111 1234567788
Q ss_pred CEEecCCCCeEEEee---CCceEEEEEeeCC
Q 009311 340 DALFIPEGWFHQVDS---DDLTIAVNFWWRS 367 (538)
Q Consensus 340 D~LfIP~gWWH~V~s---~~~sIaVN~w~~~ 367 (538)
.+.+.+.+..|+|.| .+.+|++......
T Consensus 135 ~~~~~~~~~iH~v~n~s~~~~avSLHvYspP 165 (175)
T PF05995_consen 135 VTYIFDPHGIHRVENPSGDEPAVSLHVYSPP 165 (175)
T ss_dssp EEEEBTTTBEEEEEES-SSS-EEEEEEEES-
T ss_pred eEEecCCCCeEEeccCCCCCCEEEEEEcCCC
Confidence 888889999999986 4567777765444
No 71
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.38 E-value=1.8e+02 Score=30.61 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCC
Q 009311 260 NAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAG 339 (538)
Q Consensus 260 ~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pG 339 (538)
+.|-.+..|.-..+.+++++.|+-..++ + ...+.-.+|
T Consensus 269 ~~Gf~~~~~r~t~s~iy~V~eGsg~~~I------------------------g------------------~~rf~~~~~ 306 (351)
T COG3435 269 PPGFHGKAHRHTDSTIYHVVEGSGYTII------------------------G------------------GERFDWSAG 306 (351)
T ss_pred CCcccCCceeccCCEEEEEEecceeEEE------------------------C------------------CEEeeccCC
Confidence 5577778888888889999988765443 0 124566899
Q ss_pred CEEecCCCCeEEEee-CCceEEEEEe
Q 009311 340 DALFIPEGWFHQVDS-DDLTIAVNFW 364 (538)
Q Consensus 340 D~LfIP~gWWH~V~s-~~~sIaVN~w 364 (538)
|++.||+.=||...+ .+.++..+|.
T Consensus 307 D~fvVPsW~~~~~~~gs~da~LFsfs 332 (351)
T COG3435 307 DIFVVPSWAWHEHVNGSEDAVLFSFS 332 (351)
T ss_pred CEEEccCcceeecccCCcceEEEecC
Confidence 999999999999998 5666666653
No 72
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=28.02 E-value=29 Score=37.68 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=42.1
Q ss_pred EEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCC-CCCCCCCcccccCCccEEEEEcCCCEEecCCCC----eEEEe
Q 009311 279 VAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLEN-PDFSIYPRAEHSGEYSQKVILHAGDALFIPEGW----FHQVD 353 (538)
Q Consensus 279 I~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~-pD~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gW----WH~V~ 353 (538)
|.+.+++-|. +...|||+.+.+ .=..|+.+ |+..++-.++ ..+.+++||| ||||..| |-+-.
T Consensus 385 I~kt~~ee~~---~~~klcPHhVgH----yLGmDVHD~p~v~r~~pL~----pg~ViTIEPG--vYIP~d~d~P~~FrGI 451 (488)
T KOG2414|consen 385 IRKTDREEMI---QAEKLCPHHVGH----YLGMDVHDCPTVSRDIPLQ----PGMVITIEPG--VYIPEDDDPPEEFRGI 451 (488)
T ss_pred cccchHHHHH---hhhhcCCcccch----hcCcccccCCCCCCCccCC----CCceEEecCc--eecCccCCCchHhcCc
Confidence 7788887444 455677765422 22345443 4444443332 2578999999 9999999 22222
Q ss_pred e--CCceEEEE
Q 009311 354 S--DDLTIAVN 362 (538)
Q Consensus 354 s--~~~sIaVN 362 (538)
. .++.|+|+
T Consensus 452 GiRIEDDV~i~ 462 (488)
T KOG2414|consen 452 GIRIEDDVAIG 462 (488)
T ss_pred eEEeecceEec
Confidence 2 45666665
No 73
>PF12852 Cupin_6: Cupin
Probab=27.77 E-value=52 Score=31.12 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.6
Q ss_pred EEEEcCCCEEecCCCCeEEEeeC
Q 009311 333 KVILHAGDALFIPEGWFHQVDSD 355 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s~ 355 (538)
.+.|++||++++|.|=-|...+.
T Consensus 56 ~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 56 PIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred eEEecCCCEEEEcCCCCeEeCCC
Confidence 47999999999999999999763
No 74
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=26.96 E-value=89 Score=31.36 Aligned_cols=35 Identities=34% Similarity=0.356 Sum_probs=25.4
Q ss_pred EEEEcCCCEEecCCCCeEEEee-CCceEEEEEeeCC
Q 009311 333 KVILHAGDALFIPEGWFHQVDS-DDLTIAVNFWWRS 367 (538)
Q Consensus 333 e~~L~pGD~LfIP~gWWH~V~s-~~~sIaVN~w~~~ 367 (538)
...+.|||+++||+|=.|+... .+.+..++..+..
T Consensus 62 ~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~~l~~~~ 97 (278)
T PRK10296 62 RVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISK 97 (278)
T ss_pred EEEECCCcEEEeCCCCccceeeeCCCcEEEEEEecH
Confidence 5799999999999999998754 2334445554443
No 75
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.54 E-value=32 Score=34.43 Aligned_cols=15 Identities=20% Similarity=0.698 Sum_probs=13.7
Q ss_pred EEcCCCEEecCCCCe
Q 009311 335 ILHAGDALFIPEGWF 349 (538)
Q Consensus 335 ~L~pGD~LfIP~gWW 349 (538)
.|+|||++|||..|+
T Consensus 225 ~l~~gDii~V~~s~~ 239 (239)
T TIGR03028 225 LVQPDDVIYVRESLF 239 (239)
T ss_pred ccCCCCEEEEeCccC
Confidence 499999999999985
No 76
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=25.54 E-value=75 Score=29.75 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=29.8
Q ss_pred EEEEEcCCCEEecCCC---CeEEEee--CCceEEEEEeeC
Q 009311 332 QKVILHAGDALFIPEG---WFHQVDS--DDLTIAVNFWWR 366 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~g---WWH~V~s--~~~sIaVN~w~~ 366 (538)
..+.-.+|++|+.|.+ .||.|.. .+.-.+++.|++
T Consensus 139 ~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 139 ATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred eEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEEC
Confidence 4678889999999985 9999987 468889999985
No 77
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.59 E-value=4.8e+02 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=25.7
Q ss_pred EEEEEcCCCEEecCCCCeEEEee--CCceEEEEEe
Q 009311 332 QKVILHAGDALFIPEGWFHQVDS--DDLTIAVNFW 364 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s--~~~sIaVN~w 364 (538)
+.+.|++||.|-||+|-.|.-.- ...=.||.++
T Consensus 118 ~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF 152 (181)
T COG1791 118 YQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF 152 (181)
T ss_pred EEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe
Confidence 46788999999999999999875 3344566664
No 78
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=23.27 E-value=1.1e+02 Score=34.21 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=24.2
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEE
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIA 360 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIa 360 (538)
.+..|+|||.+|||++=-|...|.+..-.
T Consensus 424 ~~~~L~~GDSi~ip~g~~H~~~N~g~~~l 452 (478)
T PRK15460 424 DIKLLGENESIYIPLGATHCLENPGKIPL 452 (478)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCCCCE
Confidence 46899999999999999999999644333
No 79
>PRK13500 transcriptional activator RhaR; Provisional
Probab=22.62 E-value=1.1e+02 Score=31.53 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=26.9
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeCC
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRS 367 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~~ 367 (538)
....+++||++|||++=.|...+.+.....|+-|..
T Consensus 86 ~~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~i~~~~ 121 (312)
T PRK13500 86 RPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCP 121 (312)
T ss_pred EEEeecCCeEEEECCCCeecccccCCceEEEEEEcc
Confidence 367999999999999999998875443344544443
No 80
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.30 E-value=1.3e+02 Score=31.52 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=42.5
Q ss_pred CCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCCCE
Q 009311 262 KSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDA 341 (538)
Q Consensus 262 gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD~ 341 (538)
|-.++-|....+++-++|.|+--|+.+. | ....+++||.
T Consensus 102 GEvApsHrHsqsAlRFvveG~Ga~T~Vd-------------G----------------------------er~~M~~GDf 140 (351)
T COG3435 102 GEVAPSHRHNQSALRFVVEGKGAYTVVD-------------G----------------------------ERTPMEAGDF 140 (351)
T ss_pred cccCCcccccccceEEEEeccceeEeec-------------C----------------------------ceeeccCCCE
Confidence 6788889998899999999987666532 1 2467899999
Q ss_pred EecCCCCeEEEee
Q 009311 342 LFIPEGWFHQVDS 354 (538)
Q Consensus 342 LfIP~gWWH~V~s 354 (538)
|..|.+=||---+
T Consensus 141 ilTP~w~wHdHgn 153 (351)
T COG3435 141 ILTPAWTWHDHGN 153 (351)
T ss_pred EEccCceeccCCC
Confidence 9999999998777
No 81
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=20.93 E-value=2e+02 Score=28.24 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=31.0
Q ss_pred EEEEEcCCCEEecCCCCeEEEeeC--CceEEEEEeeCCc
Q 009311 332 QKVILHAGDALFIPEGWFHQVDSD--DLTIAVNFWWRSS 368 (538)
Q Consensus 332 ~e~~L~pGD~LfIP~gWWH~V~s~--~~sIaVN~w~~~~ 368 (538)
.++.|-+||.+..|+---|.|... +.-++.=||..+.
T Consensus 144 h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qsl 182 (229)
T COG3128 144 HRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQSL 182 (229)
T ss_pred eEEeccCCCEEEcccccceeccccccCceEEEeeehHHH
Confidence 578999999999999999999985 5566777787773
Done!