BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009313
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 118/314 (37%), Gaps = 50/314 (15%)
Query: 216 RPK-DVGILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDML 274
RP D+ LVV + P + ++ +R ++ L GC AG + LA+D+
Sbjct: 143 RPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLA 202
Query: 275 QANPNNYAVVVSTEMVGYNWYAGRD----RSMMIPNCFFRMGCSAILMSNRRRDYHRAKY 330
+ + +VV+ E+ ++ G D R++++ F G +A+++ D R +
Sbjct: 203 ENSRGARVLVVAAELT-LMYFTGPDEGCFRTLLV-QGLFGDGAAAVIVGADADDVERPLF 260
Query: 331 RLQLIVRTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPF 390
+ +T D + + E G G +V I GD ++ + + F
Sbjct: 261 EIVSAAQTIIPESDHALNMRFTERRLDGVLGRQVPGLI----GDNVERCLLDM------F 310
Query: 391 SEQLFFFATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQK 450
L W LF + VH S T++D++
Sbjct: 311 GPLLGGDGGGGWNDLF----------------------------WAVHPGSSTIMDQVDA 342
Query: 451 NLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW-----QIAFGSGF 505
L L + ASR L +GN S +++ + L L + + W +AFG G
Sbjct: 343 ALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGM 402
Query: 506 KCNSVVWQAMRRVK 519
++++ A V
Sbjct: 403 TVDAMLLHATSHVN 416
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 117/309 (37%), Gaps = 50/309 (16%)
Query: 216 RPK-DVGILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDML 274
RP D+ LVV + P + ++ +R ++ L GC AG + LA+D+
Sbjct: 113 RPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLA 172
Query: 275 QANPNNYAVVVSTEMVGYNWYAGRD----RSMMIPNCFFRMGCSAILMSNRRRDYHRAKY 330
+ + +VV+ E+ ++ G D R++++ F G +A+++ D R +
Sbjct: 173 ENSRGARVLVVAAELT-LMYFTGPDEGCFRTLLV-QGLFGDGAAAVIVGADADDVERPLF 230
Query: 331 RLQLIVRTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPF 390
+ +T D + + E G G +V I GD ++ + + F
Sbjct: 231 EIVSAAQTIIPESDHALNMRFTERRLDGVLGRQVPGLI----GDNVERCLLDM------F 280
Query: 391 SEQLFFFATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQK 450
L W LF + VH S T++D++
Sbjct: 281 GPLLGGDGGGGWNDLF----------------------------WAVHPGSSTIMDQVDA 312
Query: 451 NLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW-----QIAFGSGF 505
L L + ASR L +GN S +++ + L L + + W +AFG G
Sbjct: 313 ALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGM 372
Query: 506 KCNSVVWQA 514
++++ A
Sbjct: 373 TVDAMLLHA 381
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 119/303 (39%), Gaps = 41/303 (13%)
Query: 216 RPKDVGILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQ 275
R ++G+LV+ S P + I+ + +I + MGC+A + + A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 276 ANPNNYAVVVSTEMVGYNWYAGRDRSMMIPNCFFRMGCSAILMSNRRRDYHRAKYRLQLI 335
A+P A+VV E+ N D + ++ + F GC+A+++ + + ++
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGK--VV 248
Query: 336 VRTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLF 395
VR+ SF + ++ G+ + E+ + + + P+V
Sbjct: 249 VRS-------SFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVV-------- 293
Query: 396 FFATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELS 455
++W + I D L + +H ++++ ++L +S
Sbjct: 294 --TEMLWDNGL-----------------QISDIDL----WAIHPGGPKIIEQSVRSLGIS 330
Query: 456 EKNMEASRMTLHRFGNTSSSSIWYEL-AYLEAKERVKRGDRVWQIAFGSGFKCNSVVWQA 514
+ S L RFGN S S+ + L ++ E K AFG G +++
Sbjct: 331 AELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDI 390
Query: 515 MRR 517
+RR
Sbjct: 391 IRR 393
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 119/303 (39%), Gaps = 41/303 (13%)
Query: 216 RPKDVGILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQ 275
R ++G+LV+ S P + I+ + +I + MGC+A + + A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 276 ANPNNYAVVVSTEMVGYNWYAGRDRSMMIPNCFFRMGCSAILMSNRRRDYHRAKYRLQLI 335
A+P A+VV E+ N D + ++ + F GC+A+++ + + ++
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGK--VV 248
Query: 336 VRTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLF 395
VR+ SF + ++ G+ + E+ + + + P+V
Sbjct: 249 VRS-------SFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVV-------- 293
Query: 396 FFATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELS 455
++W + I D L + +H ++++ ++L +S
Sbjct: 294 --TEMLWDNGL-----------------QISDIDL----WAIHPGGPKIIEQSVRSLGIS 330
Query: 456 EKNMEASRMTLHRFGNTSSSSIWYEL-AYLEAKERVKRGDRVWQIAFGSGFKCNSVVWQA 514
+ S L RFGN S S+ + L ++ E K AFG G +++
Sbjct: 331 AELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDI 390
Query: 515 MRR 517
+RR
Sbjct: 391 IRR 393
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 115/316 (36%), Gaps = 63/316 (19%)
Query: 216 RPKDVGILVVNCSIFNPT-PSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDML 274
+PK ++ CS P P + +R + + GC AG + LA+D+
Sbjct: 123 QPKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLA 182
Query: 275 QANPNNYAVVVSTEMVGYNWYAGRDRSM--MIPNCFFRMGCSAILM-SNRRRDYHRAKYR 331
+ N +VV +E+ + D + ++ F G +A+++ S+ + + +
Sbjct: 183 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 242
Query: 332 L----QLIVRTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLV 387
+ Q I GA D R +G VSKNI + AL LG
Sbjct: 243 MVWTAQTIAPDSEGAIDGHLREAGLTFHLKGAVPDIVSKNITK----ALVEAFEPLG--- 295
Query: 388 LPFSEQLFFFATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDE 447
I DY F + H +LD+
Sbjct: 296 -------------------------------------ISDYNSIF--WIAHPGGPAILDQ 316
Query: 448 LQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRV------WQI-- 499
+++ L L + M A+R L +GN SS+ + + L + K+ + G + W +
Sbjct: 317 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGLEWGVLF 375
Query: 500 AFGSGFKCNSVVWQAM 515
FG G +VV +++
Sbjct: 376 GFGPGLTIETVVLRSV 391
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAK----ERVKRG 493
H +LD ++ L L +K +EA+R L +GN SS+ + + L + K ER G
Sbjct: 890 HPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGERATTG 949
Query: 494 DRV-WQI--AFGSGFKCNSVVWQAMRRV 518
+ + W + FG G +VV ++ V
Sbjct: 950 EGLDWGVLFGFGPGLTIETVVLHSIPMV 977
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 109/289 (37%), Gaps = 70/289 (24%)
Query: 246 MRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNNYAVVVSTEMVGYNWYAGRDRSM--M 303
+R + Y + GC AG + LA+D+ + N +VV +E+ + D + +
Sbjct: 150 LRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 304 IPNCFFRMGCSAILM-SNRRRDYHRAKYRL----QLIVRTHTGADDRSFR----SVYQEE 354
+ F G +A+++ S+ + + + + Q I GA D R + + +
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLK 269
Query: 355 DEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLFFFATLVWRHLFXXXXXXXX 414
D G VSKNI + AL LG
Sbjct: 270 DVPGI----VSKNITK----ALVEAFEPLG------------------------------ 291
Query: 415 XXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSS 474
I DY F + H +LD++++ L L + M A+R L +GN SS
Sbjct: 292 ----------ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSS 339
Query: 475 SSIWYELAYLEAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
+ + + L + K+ + G + W + FG G +VV +++
Sbjct: 340 ACVLFILDEMR-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYEL--- 481
I DY F + H + +LD++++ + L + M+A+R L +GN SS+ +++ +
Sbjct: 293 ISDYNSIF--WIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLM 350
Query: 482 --AYLEAKERVKRGDRVWQI--AFGSGFKCNSVVWQAM 515
LEA + W + FG G +VV ++M
Sbjct: 351 RKKSLEAGLKTTGEGLDWGVLFGFGPGLTIETVVLRSM 388
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 139 VTREQFIEVAGKWSKSDEASLDFQRRIMKSSGIGDETYIPKVVMSAEE------NCMTMK 192
+T E+ +E+A + +D L R+++++G+ + + + E N + +
Sbjct: 24 ITMEETLELA-RRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYER 82
Query: 193 HGRLEASMVMFGALDELFEKTKVRPKDVGILV-VNCSIFNPTPSLSAMIINHYKMRGNII 251
+ V+ ALD+ ++ D+ +++ V+C+ F PSL+A +IN
Sbjct: 83 EAKSRVPAVIQRALDD----AELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTR 137
Query: 252 SYNLGGMGCSAGVIGVDLARDMLQANPNNYAVVVSTEMVGYNWYAGRDRSM--MIPNCFF 309
+ +GC+AG ++ A D A P A++V+ E Y D + ++ N F
Sbjct: 138 QIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSL-CYQPTDLGVGSLLCNGLF 196
Query: 310 RMGCSAILMSNR 321
G +A ++ R
Sbjct: 197 GDGIAAAVVRGR 208
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 422 KPYIPDYK-LAFEH---------FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGN 471
+P P K LA EH + VHA +LD+L LE+ SR TL +GN
Sbjct: 252 EPLAPALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGN 311
Query: 472 TSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFKCNSVV--WQ 513
+S+ + L L + V+ G R FG G + WQ
Sbjct: 312 IASAVVLDALRRLFDEGGVEEGARGLLAGFGPGITAEMSLGCWQ 355
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 424 YIPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAY 483
+ P Y F + VH +LD+++ L LS M+ASR L +GN SS+S+ + L
Sbjct: 304 HFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQ 361
Query: 484 LEAKERVKRGDRVWQIAFGSGFKCNSVV 511
+ K + + G GF+ V+
Sbjct: 362 IR-----KNSEELHLPTTGEGFEWGFVI 384
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELA-----YLEAKER 489
+ VH +LD+++ LEL + +ASR L +GN SS+S+ + L LE+ +
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 490 VKRGDRVWQ--IAFGSGFKCNSVVWQAM 515
W I FG G +++ +A+
Sbjct: 378 TFGEGSEWGFLIGFGPGLTVETLLLRAL 405
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYEL--- 481
I D+ F + VH + +LD++++ L L E + ASR L +GN S+ + + +
Sbjct: 297 ITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEV 354
Query: 482 ---AYLEAKERVKRG-DRVWQIAFGSGFKCNSVVWQAMR 516
+ E K G D FG G +VV +++R
Sbjct: 355 RKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVR 393
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 49/277 (17%)
Query: 234 PSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNNYAVVVSTEMVGYN 293
P ++ +I+ + ++ +L MGC AG+ + A + +A+P N +VV TE+ +
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 294 WYAGRDRSMMIPNCFFRMGCSAILMSNRRRDYHRAKYRLQLIVRTHTGADDRSFRS---- 349
+ M+ + F G +A ++ R Y + + +RSF +
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSI-------NRSFPNTENA 243
Query: 350 -VYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLFFFATLVWRHLFXX 408
V+ E E GL S I+ +G + F + L A L
Sbjct: 244 MVWDLEKEGWNLGLDASIPIV-------------IGSGIEAFVDTLLDKAKL-------- 282
Query: 409 XXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHR 468
T D + F +H K++L ++ +L + K + + H
Sbjct: 283 ---------QTSTAISAKDCE-----FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHA 328
Query: 469 FGNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGF 505
+GN SS+S+ + + + A++ +AFG G
Sbjct: 329 YGNMSSASVIFVMDH--ARKSKSLPTYSISLAFGPGL 363
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 291 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 348
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 349 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + H +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 350 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 107/289 (37%), Gaps = 52/289 (17%)
Query: 221 GILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNN 280
G++V + F TP + M+ +G I+ ++L GC+ + A DM++
Sbjct: 105 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 162
Query: 281 YAVVVSTEMVG--YNWYAGRDRSMMIPNCF-FRMGCSAILMSNRRRDYHRAKYRLQLIVR 337
+VV TE + + Y DR NCF F G +A+++ + Q I
Sbjct: 163 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG---------ETPFQGIGP 206
Query: 338 THTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLFFF 397
T G+D ++ Q+ D F N + P V +F +
Sbjct: 207 TVAGSDGEQADAIRQDIDWITF-----------------AQNPSGPRPFVRLEGPAVFRW 249
Query: 398 ATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELSEK 457
A F +P D F H A+ + + L KNL+L
Sbjct: 250 AA------FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRPD 297
Query: 458 NMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFK 506
+ A+ + GNTS++SI +A L K GD I +G+G
Sbjct: 298 AVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 344
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGD 494
F +H A++ +LD L+K +++ E + + GNT SS++ L + A + RG
Sbjct: 289 FVLHQANRFMLDALRKKMKIPEHKFP---VLMEHCGNTVSSTLPLALETMRANGTLARGM 345
Query: 495 RVWQIAFGSGF 505
R+ + FG G+
Sbjct: 346 RLMLLGFGVGY 356
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 107/289 (37%), Gaps = 52/289 (17%)
Query: 221 GILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNN 280
G++V + F TP + M+ +G I+ ++L GC+ + A DM++
Sbjct: 85 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 142
Query: 281 YAVVVSTEMVG--YNWYAGRDRSMMIPNCF-FRMGCSAILMSNRRRDYHRAKYRLQLIVR 337
+VV TE + + Y DR NCF F G +A+++ + Q I
Sbjct: 143 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG---------ETPFQGIGP 186
Query: 338 THTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLFFF 397
T G+D ++ Q+ D F N + P V +F +
Sbjct: 187 TVAGSDGEQADAIRQDIDWITF-----------------AQNPSGPRPFVRLEGPAVFRW 229
Query: 398 ATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELSEK 457
A F +P D F H A+ + + L KNL+L
Sbjct: 230 AA------FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRPD 277
Query: 458 NMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFK 506
+ A+ + GNTS++SI +A L K GD I +G+G
Sbjct: 278 AVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 324
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGD 494
F H A+ ++D ++ L L E + + R+GNTS++SI L R++ GD
Sbjct: 243 FVPHQANLRIIDAARERLGLP---WERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGD 299
Query: 495 RVWQIAFGSGFKCNSVV 511
V ++FG+G + V
Sbjct: 300 HVLLVSFGAGLTWAAAV 316
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 106/290 (36%), Gaps = 54/290 (18%)
Query: 221 GILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNN 280
G++V + F TP + M+ +G I+ ++L GC+ + A DM++
Sbjct: 106 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 163
Query: 281 YAVVVSTEMVGYN---WYAGRDRSMMIPNCF-FRMGCSAILMSNRRRDYHRAKYRLQLIV 336
+VV TE + + AG NCF F G +A+++ + Q I
Sbjct: 164 TMLVVGTEKLSPTIDMYDAG--------NCFIFADGAAAVVVG---------ETPFQGIG 206
Query: 337 RTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLFF 396
T G+D ++ Q+ D F N + P V +F
Sbjct: 207 PTVAGSDGEQADAIRQDIDWITF-----------------AQNPSGPRPFVRLEGPAVFR 249
Query: 397 FATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELSE 456
+A F +P D F H A+ + + L KNL+L
Sbjct: 250 WAA------FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRP 297
Query: 457 KNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFK 506
+ A+ + GNTS++SI +A L K GD I +G+G
Sbjct: 298 DAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 345
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 106/290 (36%), Gaps = 54/290 (18%)
Query: 221 GILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNN 280
G++V + F TP + M+ +G I+ ++L GC+ + A DM++
Sbjct: 106 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 163
Query: 281 YAVVVSTEMVGYN---WYAGRDRSMMIPNCF-FRMGCSAILMSNRRRDYHRAKYRLQLIV 336
+VV TE + + AG NCF F G +A+++ + Q I
Sbjct: 164 TMLVVGTEKLSPTIDMYDAG--------NCFIFADGAAAVVVG---------ETPFQGIG 206
Query: 337 RTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLFF 396
T G+D ++ Q+ D F N + P V +F
Sbjct: 207 PTVAGSDGEQADAIRQDIDWITF-----------------AQNPSGPRPFVRLEGPAVFR 249
Query: 397 FATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELSE 456
+A F +P D F H A+ + + L KNL+L
Sbjct: 250 WAA------FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRP 297
Query: 457 KNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFK 506
+ A+ + GNTS++SI +A L K GD I +G+G
Sbjct: 298 DAVVAND--IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 345
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 432 FEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVK 491
+H H + +LD +Q+ L + + +T+ R GN +S+S LA ++
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 492 RGDRVWQIAFGSGFKCNSVVWQAMRRVKKP 521
G RV + +GSG + +++ V +P
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVNRP 358
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 432 FEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVK 491
+H H + +LD +Q+ L + + +T+ R GN +S+S LA ++
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 492 RGDRVWQIAFGSGFKCNSVVWQAMRRVKKP 521
G RV + +GSG + +++ V +P
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVNRP 358
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 432 FEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVK 491
+H H + +LD +Q+ L + + +T+ R GN +S+S LA ++
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 492 RGDRVWQIAFGSGFKCNSVVWQAMRRVKKP 521
G RV + +GSG + +++ V +P
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVNRP 358
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 108/293 (36%), Gaps = 60/293 (20%)
Query: 221 GILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIG----VDLARDMLQA 276
G++V + F TP + M+ +G I+ ++L SAG G + A DM++
Sbjct: 85 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDL-----SAGAAGFGYALGAAADMIRG 138
Query: 277 NPNNYAVVVSTEMVG--YNWYAGRDRSMMIPNCF-FRMGCSAILMSNRRRDYHRAKYRLQ 333
+VV TE + + Y DR NCF F G +A+++ + Q
Sbjct: 139 GGAATMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG---------ETPFQ 182
Query: 334 LIVRTHTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQ 393
I T G+D ++ Q+ D F N + P V
Sbjct: 183 GIGPTVAGSDGEQADAIRQDIDWITF-----------------AQNPSGPRPFVRLEGPA 225
Query: 394 LFFFATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLE 453
+F +A F +P D F H A+ + + L KNL+
Sbjct: 226 VFRWAA------FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQ 273
Query: 454 LSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFK 506
L + A+ + GNTS++SI +A L K GD I +G+G
Sbjct: 274 LRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 324
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 425 IPDYKLAFEHFCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYL 484
I DY F + +LD++++ L L + M A+R L +GN SS+ + + L +
Sbjct: 291 ISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 348
Query: 485 EAKERVKRGDRV------WQI--AFGSGFKCNSVVWQAM 515
K+ + G + W + FG G +VV +++
Sbjct: 349 R-KKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 432 FEHFCVHAASKTVLDELQKNLELSEKNMEASRMTL-HRFGNTSSSSIWYELAYLEAKERV 490
+ F +H S+ K+ + A MT+ GN +S+ L+ L+ R+
Sbjct: 259 LDQFVIHQVSRPHTAAFVKSFGIDP----AKVMTIFGEHGNIGPASVPIVLSKLKELGRL 314
Query: 491 KRGDRVWQIAFGSGFKCN--SVVW 512
K+GDR+ + GSG C+ VVW
Sbjct: 315 KKGDRIALLGIGSGLNCSMAEVVW 338
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 223 LVVNCSIFNP--TPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNN 280
L+VN S+ PS ++++ + + + +++++ C A + G+D+A ML+ +
Sbjct: 85 LLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVAN-ACLAFINGMDIAARMLERGEID 143
Query: 281 YAVVVSTEMVGYNWYAGRDRSMMIPNCF---FR-------MGCSAILMSNRRRD 324
YA+VV E + +R M P+ FR +GC A M R +
Sbjct: 144 YALVVDGETANLVYEKTLER-MTSPDVTEEEFRNELAALTLGCGAAAMVMARTE 196
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 432 FEHFCVHAASKTVLDELQKNLELSEKNMEASRMTL-HRFGNTSSSSIWYELAYLEAKERV 490
+ F +H S+ K+ + A MT+ GN +S+ L+ L+ R+
Sbjct: 266 LDQFVIHQVSRPHTAAFVKSFGIDP----AKVMTIFGEHGNIGPASVPIVLSKLKELGRL 321
Query: 491 KRGDRVWQIAFGSGFKCN--SVVW 512
K+GDR+ + GSG C+ VVW
Sbjct: 322 KKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 432 FEHFCVHAASKTVLDELQKNLELSEKNMEASRMTL-HRFGNTSSSSIWYELAYLEAKERV 490
+ F +H S+ K+ + A MT+ GN +S+ L+ L+ R+
Sbjct: 265 LDQFVIHQVSRPHTAAFVKSFGIDP----AKVMTIFGEHGNIGPASVPIVLSKLKELGRL 320
Query: 491 KRGDRVWQIAFGSGFKCN--SVVW 512
K+GDR+ + GSG C+ VVW
Sbjct: 321 KKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 106/289 (36%), Gaps = 52/289 (17%)
Query: 221 GILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANPNN 280
G++V + F TP + M+ +G I+ ++L GC+ + A DM++
Sbjct: 85 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 142
Query: 281 YAVVVSTEMVG--YNWYAGRDRSMMIPNCF-FRMGCSAILMSNRRRDYHRAKYRLQLIVR 337
+VV TE + + Y DR NCF F G +A+++ + Q I
Sbjct: 143 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG---------ETPFQGIGP 186
Query: 338 THTGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNITTLGPLVLPFSEQLFFF 397
T G+D ++ Q+ D F N + P V +F +
Sbjct: 187 TVAGSDGEQADAIRQDIDWITF-----------------AQNPSGPRPFVRLEGPAVFRW 229
Query: 398 ATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAASKTVLDELQKNLELSEK 457
A F +P D F H + + + L KNL+L
Sbjct: 230 AA------FKMGDVGRRAMDAAGVRPDQIDV------FVPHQFNSRINELLVKNLQLRPD 277
Query: 458 NMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFK 506
+ A+ + GNTS++SI +A L K GD I +G+G
Sbjct: 278 AVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 324
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVK--- 491
+ H + ++D ++ L+LS + +R +GN S+++++ + L + V+
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 492 -RGDRV-WQI--AFGSGFKCNSVVWQAM 515
GD + W + FG G +VV ++M
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVK--- 491
+ H + ++D ++ L+LS + +R +GN S+++++ + L + V+
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 492 -RGDRV-WQI--AFGSGFKCNSVVWQAM 515
GD + W + FG G +VV ++M
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
H A+ ++ K L +S N+ +TL R GNTS++S+ L R+K G V
Sbjct: 267 HQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 323
Query: 498 QIAFGSGFKCNSVV 511
AFG GF S +
Sbjct: 324 LEAFGGGFTWGSAL 337
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
H A+ ++ K L +S N+ +TL R GNTS++S+ L R+K G V
Sbjct: 244 HQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 498 QIAFGSGFKCNSVV 511
AFG GF S +
Sbjct: 301 LEAFGGGFTWGSAL 314
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
H A+ ++ K L +S N+ +TL R GNTS++S+ L R+K G V
Sbjct: 244 HQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 498 QIAFGSGFKCNSVV 511
AFG GF S +
Sbjct: 301 LEAFGGGFTWGSAL 314
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
H A+ +++ L + L + + E + + ++GNTS++SI L + +VKRGD +
Sbjct: 236 HQANVRIINALAEKLNIPK---EKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLIL 292
Query: 498 QIAFGSGFKCNSVV 511
A G G +V+
Sbjct: 293 MTAMGGGLTWGAVL 306
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKR----G 493
H + +LD+++ L+L + A+R L +GN S+S+ Y L + K K G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 494 DRV-WQI--AFGSGFKCNSVVWQAM 515
+ + W + FG G +++ ++
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKR----G 493
H + +LD+++ L+L + A+R L +GN S+S+ Y L + K K G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 494 DRV-WQI--AFGSGFKCNSVVWQAM 515
+ + W + FG G +++ ++
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
H A+ ++ K L S N+ +TL R GNTS++S+ L R+K G V
Sbjct: 244 HQANLRIISATAKKLGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 498 QIAFGSGFKCNSVV 511
AFG GF S +
Sbjct: 301 LEAFGGGFTWGSAL 314
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
H A+ ++ K L S N+ +TL R GNTS++S+ L R+K G V
Sbjct: 244 HQANLRIISATAKKLGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 498 QIAFGSGFKCNSVV 511
AFG GF S +
Sbjct: 301 LEAFGGGFTWGSAL 314
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAK--ERVKR 492
+ +H T+L + + L+ ++M AS GN+SS++I+ L L K + +
Sbjct: 322 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAP 381
Query: 493 GDRVWQIAFGSGFKCNSVVWQAM--RRVKKPARN 524
G +V + G F V M RR+ PAR
Sbjct: 382 GGKVKEYVVGCAFGPGINVEMCMLKRRMNAPART 415
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGD 494
F H A+ ++DE K L+L E + A + GNTS++SI + L + G
Sbjct: 272 FIPHQANMRIIDEFAKQLKLPESVVVARDIA--DAGNTSAASIPLAMHRLLEENPELSGG 329
Query: 495 RVWQIAFGSGF 505
QI FG+G
Sbjct: 330 LALQIGFGAGL 340
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGD 494
F H A+ +++ ++ L +S+ M S ++++GNTS++SI + ++K D
Sbjct: 235 FIPHQANIRIMESARERLGISKDKMSVS---VNKYGNTSAASIPLSIDQELKNGKLKDDD 291
Query: 495 RVWQIAFGSGFKCNSVVWQAM 515
+ + FG G W AM
Sbjct: 292 TIVLVGFGGGL-----TWGAM 307
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKE----RVKRG 493
H +LD++ + L ++ ++ +R L +GN SS+++++ + + K + G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 494 DRV-WQI--AFGSGFKCNSVVWQAM 515
+ + W + FG G +VV +++
Sbjct: 359 EGLEWGVLFGFGPGITVETVVLRSV 383
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKE----RVKRG 493
H +LD++ + L ++ ++ +R L +GN SS+++++ + + K + G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 494 DRV-WQI--AFGSGFKCNSVVWQAM 515
+ + W + FG G +VV +++
Sbjct: 359 EGLEWGVLFGFGPGITVETVVLRSV 383
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 438 HAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
H A+ ++ + L L ++ M +T+ GNTS++SI L R+KRG V
Sbjct: 260 HQANIRIMQSTCRKLGLPQERM---IVTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVL 316
Query: 498 QIAFGSGF 505
G GF
Sbjct: 317 IEGVGGGF 324
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 470 GNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFKCNSVVWQAMR 516
G+ + + LA+L V+ GDRV G+G+ C + V + +R
Sbjct: 294 GHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 470 GNTSSSSIWYELAYLEAKERVKRGDRVWQIAFGSGFKCNSVVWQAMR 516
G+ + + LA+L V+ GDRV G+G+ C + V + +R
Sbjct: 294 GHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 437 VHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYEL 481
VH + +LD ++ L L + +R + +GN SS+ + + L
Sbjct: 325 VHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFIL 369
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 437 VHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYEL 481
VH + +LD ++ L L + +R + +GN SS+ + + L
Sbjct: 309 VHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFIL 353
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
Query: 219 DVGILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSAGVIGVDLARDMLQANP 278
DV L+ + S P L + N +RG+ + C AG + LA D++ A+P
Sbjct: 158 DVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLALAADLVAADP 217
Query: 279 NNYAVVVSTEMVGYNWYAGRD--RSMMIPNCFFRMGCSAILMSNRR-------------- 322
+ +VV +E + + D S+++ F +A++ R
Sbjct: 218 DRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVVTGRPRPESVLRLDAAWHHT 277
Query: 323 ----RDYHRAKYRLQLIVRTHTGADDRSFRSVYQ 352
RD HR + R TH D R R+V +
Sbjct: 278 LPGTRDLHRLETRAD---GTHFVMDRRGPRAVQE 308
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAK--ERVKR 492
+ +H T+L + + L+ ++M AS GN+SS++I+ L L K + +
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAP 352
Query: 493 GDRVWQIAFGSGF 505
G +V + G F
Sbjct: 353 GGKVKEYVVGCAF 365
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 435 FCVHAASKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAK--ERVKR 492
+ +H T+L + + L+ ++M AS GN+SS++I+ L L K + +
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAP 352
Query: 493 GDRVWQIAFGSGF 505
G +V + G F
Sbjct: 353 GGKVKEYVVGCAF 365
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 58/311 (18%), Positives = 117/311 (37%), Gaps = 55/311 (17%)
Query: 203 FGALDELFEKTKVRPKDVGILVVNCSIFNPTPSLSAMIINHYKMRGNIISYNLGGMGCSA 262
F A E ++ P+D+ +++V + + +A + + IS++L +
Sbjct: 63 FEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDAISFDLAA-AXTG 121
Query: 263 GVIGVDLARDMLQANPNNYAVVVSTEMVGYNWYAGRDRSMMIPNCFFRMGCSAILMSNRR 322
V + +A ++A A+V+ +++ DRS ++ F G A+++
Sbjct: 122 FVYALSVADQFIRAGKVKKALVIGSDL-NSRKLDETDRSTVV---LFGDGAGAVILEASE 177
Query: 323 RDYHRAKYRLQLIVRTH--TGADDRSFRSVYQEEDEQGFRGLKVSKNIMEIGGDALKTNI 380
++ I+ TH AD + + Q E RG++ S I G + K +
Sbjct: 178 QEG---------IISTHLHASADKNNALVLAQPE-----RGIEKSGYIEMQGNETFKLAV 223
Query: 381 TTLGPLVLPFSEQLFFFATLVWRHLFXXXXXXXXXXXXXXTKPYIPDYKLAFEHFCVHAA 440
L +V E+ L + L + H A
Sbjct: 224 RELSNVV----EETLLANNLDKKDL---------------------------DWLVPHQA 252
Query: 441 SKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQIA 500
+ ++ K LE+ +M +TL ++ N S++++ L R++RG + A
Sbjct: 253 NLRIITATAKKLEM---DMSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEA 309
Query: 501 FGSGFKCNSVV 511
FG G+ S +
Sbjct: 310 FGGGWTWGSAL 320
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 237 SAMIINHYKMRGNIISYNLGGMG-------CSAGVIGVDLARDMLQANPNNYAVVVSTEM 289
+AM+ HY + + I Y + G G V +L+R L P N+A+V
Sbjct: 333 NAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFE 392
Query: 290 VGYNWYA 296
G+ W +
Sbjct: 393 DGFEWVS 399
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 259 GCSAGVIGVDLARDMLQANPNNYAVVVSTEMVGYNWYAG 297
C A + LA+D L PN +V++T+ Y +G
Sbjct: 110 ACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSG 148
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 260 CSAGVIGVDLARDMLQANPNNYAVVVSTEMVGYNWYAG 297
C A + LA+D L PN +V++T+ Y +G
Sbjct: 111 CYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSG 148
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 260 CSAGVIGVDLARDMLQANPNNYAVVVSTEMVGYNWYAG 297
C A + LA+D L PN +V++T+ Y +G
Sbjct: 111 CYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSG 148
>pdb|1OAH|A Chain A, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa).
pdb|1OAH|B Chain B, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa)
Length = 519
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 441 SKTVLDELQKNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVW 497
+ D+L K E+S K EA R+ G+ +++ YE EA+E V++G W
Sbjct: 369 QQKTFDQLLKAQEMSVKAHEAVRLANAYEGHRAAN---YEALMAEAREMVRKGQLFW 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,631,340
Number of Sequences: 62578
Number of extensions: 551861
Number of successful extensions: 1235
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 98
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)