BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009314
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis
thaliana GN=MBD13 PE=2 SV=1
Length = 746
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 7/80 (8%)
Query: 3 IIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 61
+I+EK GLP GW K++++T ++GRK RRDP++IDP S YIF+S KDA RYVETG IG
Sbjct: 29 VIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETGNIG 88
Query: 62 RLAYKPKDDGNQDEEDLEDD 81
A K K E D+EDD
Sbjct: 89 HYARKLK------ESDIEDD 102
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 59/121 (48%), Gaps = 23/121 (19%)
Query: 346 IDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENE 405
D DL DPCIAFAIKTLTGE+ L A
Sbjct: 598 FDSTLADLCKDPCIAFAIKTLTGESL--------------------CLLNTPAISSNPIN 637
Query: 406 GEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGN 465
KQ+ ++ + E NV + EKL P P A+IW+DPCI+FAIKTLTGAIP+G
Sbjct: 638 NHTKQKGVSFTPETPGNVNT---CSEKLVFPSPPPGANIWQDPCIDFAIKTLTGAIPIGL 694
Query: 466 D 466
D
Sbjct: 695 D 695
>sp|Q9SNC0|MBD5_ARATH Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis
thaliana GN=MBD5 PE=1 SV=1
Length = 182
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 11 DGLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 69
+ LPP W EI+V +G K D +Y +P +G FRS + + Y+E G + + K +
Sbjct: 33 NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92
Query: 70 DGNQDEEDLE 79
+G+ E E
Sbjct: 93 NGDSHSEHSE 102
>sp|Q9LTJ1|MBD6_ARATH Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis
thaliana GN=MBD6 PE=1 SV=1
Length = 225
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 13 LPPGWTKEIKVTKTGRKVRR-DPYYIDPASGYIFRSMKDAVRYVETG 58
LPPGW E K+ +G D YY +P +G FRS + + Y+E G
Sbjct: 81 LPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHG 127
>sp|Q838L2|RHAA_ENTFA L-rhamnose isomerase OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=rhaA PE=3 SV=1
Length = 428
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 412 NLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDW--DV 469
N+ E + ++L E+L+ D PFADIW C E +P+G DW DV
Sbjct: 356 NVLKEAELIGDFTTRLALTEELK---DFPFADIWNYYCQE-------NHVPIGLDWLTDV 405
Query: 470 QDYFQQQINSSQTQPNNNFCQ 490
Q+Y + + + Q + C+
Sbjct: 406 QEYEKVILPTRQLPTGKDSCR 426
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYV 55
LPPGW KE + K+G + D YY P SG FRS RY+
Sbjct: 155 LPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL 197
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 12 GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYV 55
LPPGW KE + K+G + D YY P SG FRS RY+
Sbjct: 157 ALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL 200
>sp|Q00566|MECP2_RAT Methyl-CpG-binding protein 2 OS=Rattus norvegicus GN=Mecp2 PE=1
SV=1
Length = 492
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 13 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 69
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|Q9Z2D6|MECP2_MOUSE Methyl-CpG-binding protein 2 OS=Mus musculus GN=Mecp2 PE=1 SV=1
Length = 484
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 13 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 69
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|Q95LG8|MECP2_MACFA Methyl-CpG-binding protein 2 OS=Macaca fascicularis GN=MECP2 PE=2
SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 13 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 69
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|P51608|MECP2_HUMAN Methyl-CpG-binding protein 2 OS=Homo sapiens GN=MECP2 PE=1 SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 13 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 69
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,009,944
Number of Sequences: 539616
Number of extensions: 8569364
Number of successful extensions: 28873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 28094
Number of HSP's gapped (non-prelim): 936
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)