Query 009314
Match_columns 537
No_of_seqs 89 out of 91
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 23:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01396 MeCP2_MBD MeCP2, MBD1, 99.4 6.1E-13 1.3E-17 110.3 4.8 46 12-58 6-51 (77)
2 PF01429 MBD: Methyl-CpG bindi 99.4 6.3E-13 1.4E-17 108.9 4.4 50 9-59 7-57 (77)
3 cd00122 MBD MeCP2, MBD1, MBD2, 99.3 4.1E-12 8.8E-17 100.4 4.8 47 11-58 4-50 (62)
4 smart00391 MBD Methyl-CpG bind 99.0 3.8E-10 8.2E-15 93.7 4.7 45 13-58 8-53 (77)
5 cd01397 HAT_MBD Methyl-CpG bin 98.8 3E-09 6.5E-14 88.6 4.7 57 11-68 4-63 (73)
6 KOG4161 Methyl-CpG binding tra 98.2 4.8E-07 1E-11 90.2 1.9 48 12-60 18-66 (272)
7 cd01395 HMT_MBD Methyl-CpG bin 97.0 0.00066 1.4E-08 55.2 3.3 43 13-57 6-48 (60)
8 PF00397 WW: WW domain; Inter 83.5 0.67 1.5E-05 32.5 1.4 26 13-44 1-26 (31)
9 smart00456 WW Domain with 2 co 66.0 4.2 9.1E-05 27.8 1.6 24 13-43 1-24 (32)
10 KOG3259 Peptidyl-prolyl cis-tr 39.4 16 0.00036 35.4 1.5 28 11-44 5-32 (163)
11 KOG1891 Proline binding protei 33.7 24 0.00053 36.3 1.7 28 12-46 93-120 (271)
12 KOG4334 Uncharacterized conser 30.7 22 0.00048 40.0 1.0 46 10-65 152-197 (650)
13 cd00201 WW Two conserved trypt 26.6 44 0.00095 22.3 1.5 23 14-43 1-23 (31)
14 COG4871 Uncharacterized protei 25.3 37 0.0008 33.7 1.3 14 357-370 146-159 (193)
15 PHA03165 hypothetical protein; 24.9 21 0.00045 29.1 -0.4 12 348-359 44-55 (57)
16 PF14657 Integrase_AP2: AP2-li 24.0 56 0.0012 24.6 1.8 20 37-56 9-35 (46)
No 1
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=99.36 E-value=6.1e-13 Score=110.26 Aligned_cols=46 Identities=43% Similarity=0.845 Sum_probs=43.3
Q ss_pred CCCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314 12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG 58 (537)
Q Consensus 12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeTG 58 (537)
+||+||.+|+++|++|+.++.|.||++| +|++|||++||.+||+..
T Consensus 6 ~lp~GW~r~~~~R~~gs~~k~DvyY~sP-~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 6 RLPPGWKRELVPRKSGSAGKFDVYYISP-TGKKFRSKVELARYLEKN 51 (77)
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEECC-CCCEEECHHHHHHHHHhC
Confidence 5999999999999999778999999999 699999999999999874
No 2
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=99.35 E-value=6.3e-13 Score=108.86 Aligned_cols=50 Identities=40% Similarity=0.777 Sum_probs=44.6
Q ss_pred CCCCCCCCceeEEEEcCCCC-CccccccccCCCCCceeccHHHHHHHHHhCc
Q 009314 9 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETGE 59 (537)
Q Consensus 9 ~p~~LPdGWikEi~~RksGs-~~r~DkYY~dPvSGykFRSkkeV~rYLeTG~ 59 (537)
...+||+||.+|+++|++|. .++.|.||++| +|++|||++||.+||+.+.
T Consensus 7 ~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP-~Gk~~RS~~eV~~yL~~~~ 57 (77)
T PF01429_consen 7 LDPPLPDGWKREVVVRKSGSSAGKKDVYYYSP-CGKRFRSKKEVVRYLKENP 57 (77)
T ss_dssp EBTTSTTT-EEEEEESSSSTTTTSEEEEEEET-TSEEESSHHHHHHHHTTSS
T ss_pred ccCCCCCCCEEEEEEecCCCcCCceEEEEECC-CCCEEeCHHHHHHHHHhCC
Confidence 34599999999999999984 48999999999 8999999999999998775
No 3
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=99.27 E-value=4.1e-12 Score=100.37 Aligned_cols=47 Identities=40% Similarity=0.834 Sum_probs=43.8
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG 58 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeTG 58 (537)
.+||.||.+|+++|++|+.++.|.||++| +|++|||+.||++||...
T Consensus 4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP-~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 4 DPLPPGWKRELVIRKSGSAGKGDVYYYSP-CGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CCCCCCeEEEEEEcCCCCCCcceEEEECC-CCceecCHHHHHHHHHhC
Confidence 47899999999999999778999999999 699999999999999865
No 4
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=99.00 E-value=3.8e-10 Score=93.65 Aligned_cols=45 Identities=40% Similarity=0.746 Sum_probs=41.9
Q ss_pred CCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314 13 LPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG 58 (537)
Q Consensus 13 LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG 58 (537)
||.||.+++++|+.| +.++.|.||++| +|++|||+.||.+||..-
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP-~GkklRs~~ev~~YL~~~ 53 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISP-CGKKLRSKSELARYLHKN 53 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECC-CCCeeeCHHHHHHHHHhC
Confidence 999999999999998 567999999999 899999999999999753
No 5
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=98.85 E-value=3e-09 Score=88.63 Aligned_cols=57 Identities=19% Similarity=0.482 Sum_probs=47.4
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHh---CccCceeeccC
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVET---GEIGRLAYKPK 68 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeT---G~i~~~a~~P~ 68 (537)
-.||-||..|+++|..|++++.|.||+.| +|++|||++||.+||.. ..+.+..|...
T Consensus 4 ~Pl~~GW~Re~vir~~~~~~~~dV~Y~aP-cGKklRs~~ev~~yL~~~~~~~Lt~dnFsF~ 63 (73)
T cd01397 4 VPLELGWRRETRIRGLGGRIQGEVAYYAP-CGKKLRQYPEVIKYLSKNGISLLSRENFSFS 63 (73)
T ss_pred CCCCCCceeEEEeccCCCCccceEEEECC-CCcccccHHHHHHHHHhCCccCccHhHcccc
Confidence 36899999999999999888999999999 79999999999999984 23444444433
No 6
>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]
Probab=98.21 E-value=4.8e-07 Score=90.20 Aligned_cols=48 Identities=42% Similarity=0.713 Sum_probs=43.7
Q ss_pred CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhCcc
Q 009314 12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETGEI 60 (537)
Q Consensus 12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG~i 60 (537)
.||+||.++++.|++| +.++.|.||++| +|++|||+.+..+||+.-..
T Consensus 18 ~lp~GW~~~~~~r~~~~~~g~~dv~~~sp-~g~~frsk~~l~~~~~~~~~ 66 (272)
T KOG4161|consen 18 ALPPGWTREEVQRSSGLSAGKSDVYYISP-SGKKFRSKPQLARYLGKVGD 66 (272)
T ss_pred CCCCCcchhhhcccCCCcccccceEEeCC-cccccccccHHHHHhccccc
Confidence 7999999999999998 568999999999 79999999999999975443
No 7
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=96.99 E-value=0.00066 Score=55.19 Aligned_cols=43 Identities=28% Similarity=0.517 Sum_probs=37.4
Q ss_pred CCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHh
Q 009314 13 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVET 57 (537)
Q Consensus 13 LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeT 57 (537)
|==||......|+.| +.+.|.+|..| +|++.|++.||++||..
T Consensus 6 ll~gw~R~~~~~~~~-~~k~~V~Y~aP-CGr~Lr~~~EV~~YL~~ 48 (60)
T cd01395 6 LLCGFQRMKYRARVG-KVKKHVIYKAP-CGRSLRNMSEVHRYLRE 48 (60)
T ss_pred cccCeEEEEEeccCC-CcccceEEECC-cchhhhcHHHHHHHHHh
Confidence 335999999888877 45789999999 79999999999999974
No 8
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=83.48 E-value=0.67 Score=32.54 Aligned_cols=26 Identities=38% Similarity=0.937 Sum_probs=17.7
Q ss_pred CCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 13 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 13 LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
||+||.+-.... +| ..||++..+|..
T Consensus 1 LP~gW~~~~~~~-~g-----~~YY~N~~t~~s 26 (31)
T PF00397_consen 1 LPPGWEEYFDPD-SG-----RPYYYNHETGES 26 (31)
T ss_dssp SSTTEEEEEETT-TS-----EEEEEETTTTEE
T ss_pred CCcCCEEEEcCC-CC-----CEEEEeCCCCCE
Confidence 899997332212 34 689999988753
No 9
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=66.03 E-value=4.2 Score=27.81 Aligned_cols=24 Identities=38% Similarity=0.912 Sum_probs=18.0
Q ss_pred CCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 13 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 13 LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
||.||.+.+... | ..||++..|+.
T Consensus 1 lp~gW~~~~~~~--g-----~~yy~n~~t~~ 24 (32)
T smart00456 1 LPPGWEERKDPD--G-----RPYYYNHETKE 24 (32)
T ss_pred CCCCCEEEECCC--C-----CEEEEECCCCC
Confidence 799998876544 4 57999887764
No 10
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.41 E-value=16 Score=35.38 Aligned_cols=28 Identities=32% Similarity=0.837 Sum_probs=18.9
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
..||+||+|-. +-+ +.-.||+.+.|+..
T Consensus 5 ~~LP~~Wekr~----Srs--~gr~YyfN~~T~~S 32 (163)
T KOG3259|consen 5 EKLPPGWEKRM----SRS--SGRPYYFNTETNES 32 (163)
T ss_pred ccCCchhheec----ccc--CCCcceeccccchh
Confidence 48999998732 222 23579998877643
No 11
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=33.66 E-value=24 Score=36.33 Aligned_cols=28 Identities=36% Similarity=0.698 Sum_probs=20.7
Q ss_pred CCCCCceeEEEEcCCCCCccccccccCCCCCceec
Q 009314 12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFR 46 (537)
Q Consensus 12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFR 46 (537)
.||+||-+|...+ .-+||||-.+..+-=
T Consensus 93 PLPpgWav~~T~~-------grkYYIDHn~~tTHW 120 (271)
T KOG1891|consen 93 PLPPGWAVEFTTE-------GRKYYIDHNNRTTHW 120 (271)
T ss_pred CCCCCcceeeEec-------CceeEeecCCCcccc
Confidence 6999999998764 357999976554433
No 12
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=30.73 E-value=22 Score=40.03 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=32.4
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHhCccCceee
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAY 65 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeTG~i~~~a~ 65 (537)
.+.||+||++= +-.+| -+-|+.--|.-+-.|++ +||+||-+++|++
T Consensus 152 ~epLPeGW~~i--~HnSG-----mPvylHr~tRVvt~SrP---YflGtGsvRkH~i 197 (650)
T KOG4334|consen 152 SEPLPEGWTVI--SHNSG-----MPVYLHRFTRVVTHSRP---YFLGTGSVRKHEI 197 (650)
T ss_pred CCcCCCceEEE--eecCC-----CceEEeeeeeeEeccCc---eeeccccccccCC
Confidence 34899999973 34556 35566666666777776 7899998887654
No 13
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=26.61 E-value=44 Score=22.31 Aligned_cols=23 Identities=30% Similarity=0.758 Sum_probs=15.8
Q ss_pred CCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 14 PPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 14 PdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
|+||.+-.... | ..||++..++.
T Consensus 1 p~~W~~~~~~~--g-----~~yy~n~~t~~ 23 (31)
T cd00201 1 PPGWEERWDPD--G-----RVYYYNHNTKE 23 (31)
T ss_pred CCCCEEEECCC--C-----CEEEEECCCCC
Confidence 78998554333 4 67999887764
No 14
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.29 E-value=37 Score=33.66 Aligned_cols=14 Identities=64% Similarity=1.106 Sum_probs=12.7
Q ss_pred hhHHHHHhhhcccc
Q 009314 357 PCIAFAIKTLTGET 370 (537)
Q Consensus 357 Pci~fAIkTLtg~~ 370 (537)
-|.+||||.|.|..
T Consensus 146 tCmaFAiKLlnge~ 159 (193)
T COG4871 146 TCMAFAIKLLNGEV 159 (193)
T ss_pred HHHHHHHHHHcCcc
Confidence 69999999999974
No 15
>PHA03165 hypothetical protein; Provisional
Probab=24.88 E-value=21 Score=29.09 Aligned_cols=12 Identities=67% Similarity=1.508 Sum_probs=11.0
Q ss_pred cccCccCCchhH
Q 009314 348 LPFGDLLSDPCI 359 (537)
Q Consensus 348 lp~~~~wsDPci 359 (537)
.|||+++|.|||
T Consensus 44 spfgeilsspci 55 (57)
T PHA03165 44 SPFGEILSSPCI 55 (57)
T ss_pred CchhhhhcCccc
Confidence 589999999998
No 16
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=24.02 E-value=56 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=15.5
Q ss_pred cCCCCCc-------eeccHHHHHHHHH
Q 009314 37 IDPASGY-------IFRSMKDAVRYVE 56 (537)
Q Consensus 37 ~dPvSGy-------kFRSkkeV~rYLe 56 (537)
++|.+|+ -|++++|+..+|.
T Consensus 9 ~~~~~Gkrk~~~k~GF~TkkeA~~~~~ 35 (46)
T PF14657_consen 9 YDDETGKRKQKTKRGFKTKKEAEKALA 35 (46)
T ss_pred EECCCCCEEEEEcCCCCcHHHHHHHHH
Confidence 5666663 3999999999985
Done!