Query 009314
Match_columns 537
No_of_seqs 89 out of 91
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 23:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d9n_A Methyl-CPG-binding prot 99.3 4.9E-13 1.7E-17 109.8 3.3 46 11-57 9-55 (75)
2 2ky8_A Methyl-CPG-binding doma 99.3 9.7E-13 3.3E-17 107.1 4.7 46 12-58 12-58 (72)
3 3c2i_A Methyl-CPG-binding prot 99.3 1.5E-12 5.1E-17 111.9 5.5 46 11-57 22-68 (97)
4 3vxv_A Methyl-CPG-binding doma 99.3 2.7E-12 9.1E-17 103.9 4.9 47 11-58 4-51 (69)
5 1ub1_A MECP2, attachment regio 99.1 2.6E-11 8.9E-16 109.2 4.0 46 11-57 36-82 (133)
6 1ymz_A CC45; artificial protei 81.0 0.9 3.1E-05 32.7 2.4 29 8-43 4-32 (43)
7 2ysg_A Syntaxin-binding protei 80.2 1.1 3.8E-05 32.1 2.7 27 10-43 5-31 (40)
8 2ysh_A GAS-7, growth-arrest-sp 77.2 1.8 6.2E-05 30.6 3.0 28 10-44 5-32 (40)
9 1wr3_A Ubiquitin-protein ligas 69.7 2.5 8.4E-05 29.3 2.1 27 11-44 3-29 (36)
10 2law_A Yorkie homolog; YAP, SM 68.7 2.7 9.1E-05 29.8 2.2 27 11-44 5-31 (38)
11 2jv4_A Peptidyl-prolyl CIS/tra 66.8 2.8 9.6E-05 32.2 2.1 27 11-44 6-33 (54)
12 1e0m_A Wwprototype; SH3 protot 66.5 2.7 9.4E-05 28.9 1.8 27 11-44 2-28 (37)
13 1i5h_W Rnedd4, ubiquitin ligas 65.7 3 0.0001 31.4 2.1 29 8-43 7-35 (50)
14 2ysf_A E3 ubiquitin-protein li 65.0 3.3 0.00011 29.7 2.1 27 10-43 5-31 (40)
15 2kyk_A E3 ubiquitin-protein li 64.5 4.2 0.00014 28.7 2.5 28 10-44 4-31 (39)
16 2kpz_A E3 ubiquitin-protein li 63.1 3.3 0.00011 30.9 1.8 29 9-44 9-37 (49)
17 2l4j_A YES-associated protein 61.3 4.5 0.00015 29.9 2.3 28 9-43 8-35 (46)
18 1wr4_A Ubiquitin-protein ligas 60.0 4.8 0.00016 27.5 2.1 27 11-44 3-29 (36)
19 1wr7_A NEDD4-2; all-beta, liga 59.4 5.2 0.00018 28.6 2.3 28 10-44 6-33 (41)
20 1wmv_A WWOX, WW domain contain 58.8 5.1 0.00017 30.7 2.3 27 9-42 8-34 (54)
21 2ez5_W Dnedd4, E3 ubiquitin-pr 58.3 5.4 0.00018 29.5 2.2 27 10-43 8-34 (46)
22 2djy_A SMAD ubiquitination reg 58.0 5.6 0.00019 28.9 2.3 27 10-43 5-31 (42)
23 2jmf_A E3 ubiquitin-protein li 56.3 6 0.00021 30.2 2.3 27 10-43 16-42 (53)
24 2kxq_A E3 ubiquitin-protein li 55.9 6.1 0.00021 32.4 2.4 28 10-44 7-34 (90)
25 2ysb_A Salvador homolog 1 prot 55.8 4 0.00014 30.7 1.2 26 11-43 10-35 (49)
26 2dmv_A Itchy homolog E3 ubiqui 52.3 5.9 0.0002 28.6 1.6 28 10-44 5-32 (43)
27 3l4h_A E3 ubiquitin-protein li 51.4 7.2 0.00025 34.3 2.3 25 11-42 71-95 (109)
28 2zaj_A Membrane-associated gua 50.4 10 0.00035 28.6 2.7 28 9-43 10-37 (49)
29 2ysc_A Amyloid beta A4 precurs 49.1 7.4 0.00025 28.2 1.7 27 10-44 6-32 (39)
30 1yw5_A Peptidyl prolyl CIS/tra 45.5 7.5 0.00026 34.9 1.5 41 11-57 6-52 (177)
31 2ysd_A Membrane-associated gua 45.4 12 0.0004 29.1 2.4 28 9-43 11-38 (57)
32 2yse_A Membrane-associated gua 45.1 11 0.00038 29.7 2.3 29 9-44 10-38 (60)
33 2dwv_A Salvador homolog 1 prot 40.0 16 0.00055 27.4 2.3 26 11-43 12-37 (49)
34 3tc5_A Peptidyl-prolyl CIS-tra 39.1 15 0.0005 33.3 2.3 28 10-44 7-35 (166)
35 1tk7_A CG4244-PB; WW domain, n 35.1 16 0.00056 29.7 1.8 28 10-44 10-37 (88)
36 2ho2_A Fe65 protein, amyloid b 33.2 16 0.00056 26.3 1.4 25 11-43 2-26 (38)
37 1tk7_A CG4244-PB; WW domain, n 32.5 21 0.00071 29.1 2.1 27 11-44 55-81 (88)
38 2kxq_A E3 ubiquitin-protein li 32.5 20 0.00067 29.4 1.9 27 10-43 53-79 (90)
39 1o6w_A PRP40, PRE-mRNA process 29.2 12 0.00042 29.1 0.2 26 12-44 40-65 (75)
40 1jmq_A YAP65, 65 kDa YES-assoc 28.1 24 0.00083 25.5 1.6 25 11-42 7-31 (46)
No 1
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.32 E-value=4.9e-13 Score=109.84 Aligned_cols=46 Identities=35% Similarity=0.637 Sum_probs=42.6
Q ss_pred CCCCCCceeEEEEcCCCC-CccccccccCCCCCceeccHHHHHHHHHh
Q 009314 11 DGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 57 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs-~~r~DkYY~dPvSGykFRSkkeV~rYLeT 57 (537)
..||+||.+|+++|++|. .++.|.||++| +|++|||++||.+||+.
T Consensus 9 p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~ev~ryL~~ 55 (75)
T 1d9n_A 9 PALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP 55 (75)
T ss_dssp TTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHHHHHHHCT
T ss_pred CCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHHHHHHhcc
Confidence 489999999999999984 47999999999 89999999999999964
No 2
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.31 E-value=9.7e-13 Score=107.07 Aligned_cols=46 Identities=43% Similarity=0.827 Sum_probs=43.1
Q ss_pred CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314 12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG 58 (537)
Q Consensus 12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG 58 (537)
+||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+.+
T Consensus 12 ~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr~RS~~ev~~YL~~~ 58 (72)
T 2ky8_A 12 ALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGNA 58 (72)
T ss_dssp SSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCEEESHHHHHHHHTTS
T ss_pred CCCCCCEEEEEEecCCCCCCceEEEEECC-CCCEeEcHHHHHHHHhcC
Confidence 8999999999999988 468999999999 899999999999999773
No 3
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.30 E-value=1.5e-12 Score=111.85 Aligned_cols=46 Identities=39% Similarity=0.745 Sum_probs=42.7
Q ss_pred CCCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHh
Q 009314 11 DGLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVET 57 (537)
Q Consensus 11 ~~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeT 57 (537)
.+||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+.
T Consensus 22 ~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~GkkfRSk~ev~ryL~~ 68 (97)
T 3c2i_A 22 PTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK 68 (97)
T ss_dssp TTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEEECHHHHHHHHHH
Confidence 37999999999999998 457999999999 89999999999999974
No 4
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.27 E-value=2.7e-12 Score=103.87 Aligned_cols=47 Identities=30% Similarity=0.622 Sum_probs=43.1
Q ss_pred CCCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314 11 DGLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG 58 (537)
Q Consensus 11 ~~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG 58 (537)
..||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+..
T Consensus 4 ~plp~GW~R~~~~R~~G~s~gk~DvyY~sP-~Gkk~RSk~ev~~yL~~~ 51 (69)
T 3vxv_A 4 KPVPCGWERVVKQRLSGKTAGKFDVYFISP-QGLKFRSKRSLANYLLKN 51 (69)
T ss_dssp CCSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHHH
T ss_pred CcCCCCCEEEEEEeccCCCCCcceEEEEcC-CCCEeeCHHHHHHHHHhC
Confidence 47999999999999998 467899999999 599999999999999864
No 5
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.12 E-value=2.6e-11 Score=109.19 Aligned_cols=46 Identities=39% Similarity=0.753 Sum_probs=42.8
Q ss_pred CCCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHh
Q 009314 11 DGLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVET 57 (537)
Q Consensus 11 ~~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeT 57 (537)
.+||+||.+|+++|++| +.++.|.|||+| +|++|||+.||.+||+.
T Consensus 36 ~~LP~GWkRe~~~RksG~Sagk~DVYY~SP-~GKkfRSk~Ev~ryL~~ 82 (133)
T 1ub1_A 36 PTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEK 82 (133)
T ss_dssp CCBTTBCEEEEEECCCSSSCCSEEEEEECT-TSCEESSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEecCCCCCCceeEEEECC-CCCeeeCHHHHHHHHHH
Confidence 48999999999999998 568999999999 69999999999999974
No 6
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=81.00 E-value=0.9 Score=32.71 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=18.5
Q ss_pred cCCCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 8 DTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 8 ~~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
+.+..||+||....- .+| ..||++-.++.
T Consensus 4 e~~~~LP~gW~~~~~--~~G-----r~YY~n~~T~~ 32 (43)
T 1ymz_A 4 GRSMPLPPGWERRTD--VEG-----KVYYFNVRTLT 32 (43)
T ss_dssp ---CCCCSSEEEEEC--TTS-----CEEEEETTTTE
T ss_pred ccCCCCCCCCEEEEC--CCC-----CEEEEECCCCC
Confidence 356789999965432 344 57999887764
No 7
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=80.20 E-value=1.1 Score=32.09 Aligned_cols=27 Identities=33% Similarity=0.714 Sum_probs=18.2
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
...||+||.+. ...+| ..||++-.++.
T Consensus 5 ~~~LP~gWe~~--~~~~G-----r~Yy~nh~t~~ 31 (40)
T 2ysg_A 5 SSGLPYGWEEA--YTADG-----IKYFINHVTQT 31 (40)
T ss_dssp SSCCCTTEEEE--ECSSS-----CEEEEESSSCC
T ss_pred cCCCCCCcEEE--EcCCC-----CEEEEECCCCc
Confidence 35799999444 44444 57999887653
No 8
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=77.19 E-value=1.8 Score=30.57 Aligned_cols=28 Identities=32% Similarity=0.871 Sum_probs=19.1
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
...||+||... .-.+| ..||++..++..
T Consensus 5 ~~~LP~gW~~~--~d~~G-----r~YY~n~~T~~t 32 (40)
T 2ysh_A 5 SSGLPPGWQSY--LSPQG-----RRYYVNTTTNET 32 (40)
T ss_dssp CSSCCTTCEEE--ECTTS-----CEEEECSSSCCE
T ss_pred CCCCCCCceEE--ECCCC-----CEEEEECCCCCE
Confidence 45899999533 33344 579999887754
No 9
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=69.72 E-value=2.5 Score=29.26 Aligned_cols=27 Identities=30% Similarity=0.820 Sum_probs=19.5
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
..||+||.+..- .+| ..||++-.++.+
T Consensus 3 ~~LP~GWe~~~d--~~G-----~~Yy~n~~t~~t 29 (36)
T 1wr3_A 3 PPLPPGWEEKVD--NLG-----RTYYVNHNNRST 29 (36)
T ss_dssp SCSCTTEEEEEC--SSS-----CEEEEETTTCCE
T ss_pred CCCCCCCEEEEC--CCC-----CEEEEECCCCCE
Confidence 579999987643 344 579999877654
No 10
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=68.70 E-value=2.7 Score=29.77 Aligned_cols=27 Identities=30% Similarity=0.741 Sum_probs=19.8
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
..||+||.+.+- .+| ..||++-.++.+
T Consensus 5 ~~LP~gWe~~~~--~~G-----~~Yy~nh~t~~t 31 (38)
T 2law_A 5 GPLPDGWEQAMT--QDG-----EIYYINHKNKTT 31 (38)
T ss_dssp CCCSSSCCEEEE--TTT-----EEEEEETTTTEE
T ss_pred CCCCCCcEEEEC--CCC-----CEEEEECCCCCE
Confidence 479999988755 444 579999877643
No 11
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=66.76 E-value=2.8 Score=32.21 Aligned_cols=27 Identities=37% Similarity=0.856 Sum_probs=18.1
Q ss_pred CCCCCCceeEEEEcC-CCCCccccccccCCCCCce
Q 009314 11 DGLPPGWTKEIKVTK-TGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 11 ~~LPdGWikEi~~Rk-sGs~~r~DkYY~dPvSGyk 44 (537)
..||+||.. +.-+ +| ..||++..|+..
T Consensus 6 ~~LP~GW~~--~~~~~~G-----r~YY~N~~T~~s 33 (54)
T 2jv4_A 6 TGLPAGWEV--RHSNSKN-----LPYYFNPATRES 33 (54)
T ss_dssp CCCCSSCCE--EECSSSS-----CEEEEETTTTEE
T ss_pred CCCCCCcEE--EEECCCC-----CEEEEECCCCcE
Confidence 479999983 2222 33 579999887753
No 12
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=66.52 E-value=2.7 Score=28.94 Aligned_cols=27 Identities=33% Similarity=0.751 Sum_probs=18.9
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
..||+||.+-.- .+| ..||++-.++..
T Consensus 2 ~~LP~gW~~~~~--~~G-----~~Yy~n~~t~~t 28 (37)
T 1e0m_A 2 MGLPPGWDEYKT--HNG-----KTYYYNHNTKTS 28 (37)
T ss_dssp CCSCTTEEEEEC--SSC-----CEEEEETTTTEE
T ss_pred CCCCCCcEEEEC--CCC-----CEEEEECCCCCe
Confidence 369999987432 344 579998877654
No 13
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=65.66 E-value=3 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.627 Sum_probs=20.1
Q ss_pred cCCCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 8 DTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 8 ~~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
.....||+||.+.+- .+| ..||++-.++.
T Consensus 7 ~~~~~LP~gWe~~~~--~~G-----r~Yy~nh~t~~ 35 (50)
T 1i5h_W 7 NDLGPLPPGWEERTH--TDG-----RVFFINHNIKK 35 (50)
T ss_dssp SCCSSCSTTEEEEEC--TTS-----CEEEEETTTTE
T ss_pred ccCCCCCcCcEEEEc--CCC-----CEEEEECCCCC
Confidence 445689999987643 444 57898877654
No 14
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=65.04 E-value=3.3 Score=29.65 Aligned_cols=27 Identities=33% Similarity=0.794 Sum_probs=18.7
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
...||+||.+.+- .+| ..||++-.+..
T Consensus 5 ~~~LP~gWe~~~~--~~G-----~~Yy~nh~t~~ 31 (40)
T 2ysf_A 5 SSGLPEGWEMRFT--VDG-----IPYFVDHNRRT 31 (40)
T ss_dssp CCCCCSSEEEEEC--TTC-----CEEEEETTTCC
T ss_pred cCCCCcCcEEEEc--CCC-----CEEEEECCCCc
Confidence 3579999987643 344 57898876653
No 15
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=64.54 E-value=4.2 Score=28.69 Aligned_cols=28 Identities=32% Similarity=0.769 Sum_probs=19.8
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
...||+||.+..- .+| ..||++-.++.+
T Consensus 4 ~~~LP~gWe~~~d--~~G-----~~YY~n~~t~~t 31 (39)
T 2kyk_A 4 MGPLPPGWERRVD--NMG-----RIYYVDHFTRTT 31 (39)
T ss_dssp SCCCCSSCEEEEC--TTS-----CEEEECSSSCCE
T ss_pred cCCCCCCcEEEEc--CCC-----CEEEEECCCCCE
Confidence 3479999987643 344 579999877643
No 16
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=63.14 E-value=3.3 Score=30.86 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=18.6
Q ss_pred CCCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 9 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 9 ~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
....||+||.+.+- .+| ..||++-.++.+
T Consensus 9 ~~~~LP~gWe~~~~--~~G-----~~Yy~nh~T~~t 37 (49)
T 2kpz_A 9 EQGFLPKGWEVRHA--PNG-----RPFFIDHNTKTT 37 (49)
T ss_dssp ---CCCTTEEEEEC--TTS-----CEEEEETTTTEE
T ss_pred cCCCCCCCcEEEEC--CCC-----CEEEEECCCCCE
Confidence 44589999987643 344 579998776543
No 17
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=61.29 E-value=4.5 Score=29.94 Aligned_cols=28 Identities=32% Similarity=0.727 Sum_probs=19.5
Q ss_pred CCCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 9 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 9 ~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
....||+||.+.+- .+| ..||++-.++.
T Consensus 8 ~~~~LP~gWe~~~~--~~G-----~~Yyinh~t~~ 35 (46)
T 2l4j_A 8 ASGPLPEGWEQAIT--PEG-----EIYYINHKNKT 35 (46)
T ss_dssp TTSCCCTTCEEEEC--TTS-----CEEEEETTTTE
T ss_pred cCCCCCcCceeEEC--CCC-----CEEEEECCCCC
Confidence 34579999987643 444 57899876654
No 18
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=59.98 E-value=4.8 Score=27.46 Aligned_cols=27 Identities=30% Similarity=0.761 Sum_probs=18.9
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
..||+||.+-.. .+| ..||++-.++.+
T Consensus 3 ~~LP~gWe~~~d--~~g-----~~Yy~n~~t~~t 29 (36)
T 1wr4_A 3 PGLPSGWEERKD--AKG-----RTYYVNHNNRTT 29 (36)
T ss_dssp TTCCTTEEEEEC--SSS-----CEEEEETTTTEE
T ss_pred CCCCCCCEEEEC--CCC-----CEEEEECCCCCE
Confidence 479999977533 344 459999877654
No 19
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=59.40 E-value=5.2 Score=28.62 Aligned_cols=28 Identities=36% Similarity=0.795 Sum_probs=20.0
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
...||+||.+.+- .+| ..||++-.++.+
T Consensus 6 ~~~LP~gWe~~~~--~~G-----~~Yy~n~~t~~t 33 (41)
T 1wr7_A 6 QSFLPPGWEMRIA--PNG-----RPFFIDHNTKTT 33 (41)
T ss_dssp CCSSCTTEEEEEC--TTS-----CEEEEETTTTEE
T ss_pred cCCCCCCcEEEEc--CCC-----CEEEEECCCCCe
Confidence 3589999987643 344 579999877643
No 20
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=58.81 E-value=5.1 Score=30.68 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=18.3
Q ss_pred CCCCCCCCceeEEEEcCCCCCccccccccCCCCC
Q 009314 9 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 42 (537)
Q Consensus 9 ~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSG 42 (537)
....||+||.+.+- .+| -.||+|-.+.
T Consensus 8 ~~~~LP~GWe~~~~--~~G-----~~Yyinh~tk 34 (54)
T 1wmv_A 8 VAGDLPYGWEQETD--ENG-----QVFFVDHINK 34 (54)
T ss_dssp CSSCSCTTEEEEEC--TTS-----CEEEEESSSC
T ss_pred cCCCCCcCcEEEEC--CCC-----CEEEEeCCCC
Confidence 34579999987654 344 4688887654
No 21
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=58.31 E-value=5.4 Score=29.46 Aligned_cols=27 Identities=33% Similarity=0.783 Sum_probs=18.9
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
...||+||.+.+- .+| ..||++-.+..
T Consensus 8 ~~~LP~gWe~~~~--~~G-----r~Yyinh~t~~ 34 (46)
T 2ez5_W 8 EEPLPPRWSMQVA--PNG-----RTFFIDHASRR 34 (46)
T ss_dssp SCCCCTTEEEEEC--TTS-----SEEEEETTTTE
T ss_pred CCCCCcCcEEEEc--CCC-----CEEEEECCCCC
Confidence 3579999987644 344 57898876654
No 22
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=58.00 E-value=5.6 Score=28.91 Aligned_cols=27 Identities=33% Similarity=0.720 Sum_probs=18.8
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
...||+||.+.+- .+| -.||++-.++.
T Consensus 5 ~~~LP~GWe~~~~--~~G-----~~Yy~nh~t~~ 31 (42)
T 2djy_A 5 SGPLPPGWEIRNT--ATG-----RVYFVDHNNRT 31 (42)
T ss_dssp CSCCCSSEEEEEC--SSS-----CEEEEETTTTE
T ss_pred cCCCCcCcEEEEC--CCC-----CEEEEECCCCC
Confidence 3479999987642 344 57999876653
No 23
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=56.29 E-value=6 Score=30.24 Aligned_cols=27 Identities=26% Similarity=0.735 Sum_probs=18.7
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
...||+||.+.+- .+| -.||++-.+..
T Consensus 16 ~~~LP~GWe~~~~--~~G-----r~Yyinh~tk~ 42 (53)
T 2jmf_A 16 EGPLPPGWEIRYT--AAG-----ERFFVDHNTRR 42 (53)
T ss_dssp CSCCCTTEEEEEC--TTS-----CEEEEETTTCC
T ss_pred CCCCCcCcEEEEc--CCC-----CEEEEeCCCCc
Confidence 3479999987653 344 46898876553
No 24
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=55.86 E-value=6.1 Score=32.39 Aligned_cols=28 Identities=29% Similarity=0.725 Sum_probs=18.5
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
...||+||.+.+ ..+| -.||++..++..
T Consensus 7 ~~~LP~gWe~~~--~~~G-----r~YY~n~~t~~t 34 (90)
T 2kxq_A 7 PPDLPEGYEQRT--TQQG-----QVYFLHTQTGVS 34 (90)
T ss_dssp CCSCCSSCEEEE--ETTT-----EEEEEETTTTEE
T ss_pred CCCCCCCcEEEE--CCCC-----CEEEEECCCCeE
Confidence 357999995444 3455 368888876553
No 25
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=55.84 E-value=4 Score=30.71 Aligned_cols=26 Identities=38% Similarity=0.797 Sum_probs=18.4
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
..||+||.+.+- .+| ..||++-.+..
T Consensus 10 ~~LP~gWe~~~~--~~G-----r~Yy~nh~t~~ 35 (49)
T 2ysb_A 10 LPLPPGWSVDWT--MRG-----RKYYIDHNTNT 35 (49)
T ss_dssp CCCCTTEEEEEC--SSS-----CEEEEETTTTE
T ss_pred CCCCCCceEEEC--CCC-----CEEEEEcCCCC
Confidence 479999987654 344 57999876554
No 26
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.29 E-value=5.9 Score=28.60 Aligned_cols=28 Identities=36% Similarity=0.924 Sum_probs=19.7
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
...||+||.+-+- .+| ..||++-.++.+
T Consensus 5 ~~~LP~GWe~~~d--~~G-----r~YY~n~~t~~T 32 (43)
T 2dmv_A 5 SSGLPPGWEQRVD--QHG-----RVYYVDHVEKRT 32 (43)
T ss_dssp CCSCCTTEEEEEC--TTS-----CEEEEETTTCCE
T ss_pred CCCCCCCceEEEC--CCC-----CEEEEECCCCCE
Confidence 4589999977644 244 579998877654
No 27
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=51.40 E-value=7.2 Score=34.25 Aligned_cols=25 Identities=40% Similarity=0.857 Sum_probs=18.0
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCC
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 42 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSG 42 (537)
..||+|| |.+.-.+| ..||+|-.+.
T Consensus 71 ~pLP~GW--E~r~d~~G-----r~YfIdH~tk 95 (109)
T 3l4h_A 71 LELPRGW--EIKTDQQG-----KSFFVDHNSR 95 (109)
T ss_dssp SCCCTTE--EEEECTTC-----CEEEEETTTT
T ss_pred CCCCCCC--eEEECCCC-----CEEEEeCCCC
Confidence 4799999 56665566 4788887654
No 28
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=50.39 E-value=10 Score=28.59 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=19.6
Q ss_pred CCCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 9 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 9 ~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
....||+||.+..- .+| -.||++-.+..
T Consensus 10 ~~~~LP~GWe~~~d--~~G-----r~YYvnh~t~~ 37 (49)
T 2zaj_A 10 SELELPAGWEKIED--PVY-----GIYYVDHINRK 37 (49)
T ss_dssp CSSCCCTTEEEEEE--TTT-----EEEEEETTTTE
T ss_pred CCCCCCcCceEEEc--CCC-----CEEEEeCCCCC
Confidence 45689999987654 344 36999887654
No 29
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=49.11 E-value=7.4 Score=28.16 Aligned_cols=27 Identities=44% Similarity=0.884 Sum_probs=18.3
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
...||+||.+..- .+| +||++-.++.+
T Consensus 6 ~~~LP~GWe~~~~--~~G------~YY~n~~t~~t 32 (39)
T 2ysc_A 6 SGGLPPGWRKIHD--AAG------TYYWHVPSGST 32 (39)
T ss_dssp CCCCCTTEEEEEE--TTE------EEEEESSSCCE
T ss_pred CCCCCCCcEEEEc--CCC------CEEEEcCCCCE
Confidence 4589999986532 223 39998877754
No 30
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=45.48 E-value=7.5 Score=34.95 Aligned_cols=41 Identities=20% Similarity=0.546 Sum_probs=27.4
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCcee------ccHHHHHHHHHh
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIF------RSMKDAVRYVET 57 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykF------RSkkeV~rYLeT 57 (537)
.+||+||.+.+- ++ +...||+++++...= -|-.+|..|+..
T Consensus 6 ~~lp~~w~~~~s--~s----~~~~Yy~~~~~~~~~~~~~~~vs~~ei~~yy~~ 52 (177)
T 1yw5_A 6 TGLPPNWTIRVS--RS----HNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAK 52 (177)
T ss_dssp CCCCTTEEEEEC--SS----TTCEEEEETTTCCEESSCCTTCCHHHHHHHHHH
T ss_pred CCCCchHHHHhc--cc----CCchhhhhHHHhhHhhcCcccCCHHHHHHHHHH
Confidence 569999976443 22 236788888764321 367889998875
No 31
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=45.41 E-value=12 Score=29.10 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=19.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 9 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 9 ~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
....||+||.+.+- .+| ..||++-.+..
T Consensus 11 ~~~~LP~GWe~~~~--~~G-----r~Yyinh~tk~ 38 (57)
T 2ysd_A 11 NLGPLPENWEMAYT--ENG-----EVYFIDHNTKT 38 (57)
T ss_dssp CCCSCCSSEEEEEC--SSC-----CEEEEETTTTE
T ss_pred CCCCCCcCcEEEEC--CCC-----CEEEEECCCCc
Confidence 34579999987754 344 57888876543
No 32
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.15 E-value=11 Score=29.67 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=20.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 9 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 9 ~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
....||+||.+.+- ..| -.||++-.+..+
T Consensus 10 ~~~~LP~GWE~~~d--~~G-----r~YYvnh~tk~T 38 (60)
T 2yse_A 10 SELELPAGWEKIED--PVY-----GIYYVDHINRKT 38 (60)
T ss_dssp CCSSCCSSEEEEEC--SSS-----CEEEEETTTTEE
T ss_pred CCCCCCCCcEEEEC--CCC-----CEEEEeCCCCCe
Confidence 44689999976543 334 368999877654
No 33
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.99 E-value=16 Score=27.42 Aligned_cols=26 Identities=35% Similarity=0.811 Sum_probs=18.3
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
..||+||.+..- ..| -.||+|-.++.
T Consensus 12 ~~LP~GWe~~~d--~~g-----~~YYvnh~t~~ 37 (49)
T 2dwv_A 12 EGLPPGWERVES--SEF-----GTYYVDHTNKR 37 (49)
T ss_dssp SCCCTTEEEEEE--TTT-----EEEEEETTTTE
T ss_pred CCCCcCcEEEEC--CCC-----CEEEEECCCCC
Confidence 589999977643 244 37899887654
No 34
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=39.08 E-value=15 Score=33.26 Aligned_cols=28 Identities=29% Similarity=0.744 Sum_probs=15.9
Q ss_pred CCCCCCCceeEEEEc-CCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~R-ksGs~~r~DkYY~dPvSGyk 44 (537)
+..||+||. .+.- ..| -.||++..++.+
T Consensus 7 ~~~LP~gWe--~~~~~~~g-----~~yy~n~~t~~t 35 (166)
T 3tc5_A 7 EEKLPPGWE--KAMSRSSG-----RVYYFNHITNAS 35 (166)
T ss_dssp ---CCTTEE--EEECTTTC-----CEEEEETTTCCE
T ss_pred CCCCCCCce--EEEcCCCC-----CEEEEECCCCCE
Confidence 457999994 3333 233 468888766543
No 35
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=35.10 E-value=16 Score=29.72 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=19.1
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
...||+||.+.+- .+| -.||++-.++..
T Consensus 10 ~~~LP~gWe~~~~--~~G-----r~Yy~n~~t~~t 37 (88)
T 1tk7_A 10 LGPLPDGWEKKIQ--SDN-----RVYFVNHKNRTT 37 (88)
T ss_dssp TSSSSSSCCEEEE--TTT-----EEEEEETTTTEE
T ss_pred cCCCCCCcEEEEC--CCC-----CEEEEECCCCCe
Confidence 3479999966543 445 478988776654
No 36
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=33.23 E-value=16 Score=26.27 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=16.7
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
..||+||.+..- . . . .||++-.++.
T Consensus 2 ~~LP~GWe~~~d--~--~---g-~YY~n~~t~~ 26 (38)
T 2ho2_A 2 SDLPAGWMRVQD--T--S---G-TYYWHIPTGT 26 (38)
T ss_dssp CCSCTTEEEEEC--S--S---C-EEEEETTTTE
T ss_pred CcCCCCceEEEe--C--C---C-CEEEecCCCC
Confidence 469999986543 1 1 3 7898876654
No 37
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=32.54 E-value=21 Score=29.09 Aligned_cols=27 Identities=26% Similarity=0.733 Sum_probs=19.4
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
..||.||.+-+- .+| -.||++..++..
T Consensus 55 ~~LP~gWe~~~~--~~G-----~~Yy~nh~t~~t 81 (88)
T 1tk7_A 55 GPLPPGWEIRYT--AAG-----ERFFVDHNTRRT 81 (88)
T ss_dssp CSSCSSCEEEEE--TTT-----EEEEEETTTTEE
T ss_pred cccCCceEEEEC--CCC-----CEEEEECCCCcE
Confidence 479999987643 344 579999877643
No 38
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=32.52 E-value=20 Score=29.36 Aligned_cols=27 Identities=33% Similarity=0.687 Sum_probs=19.0
Q ss_pred CCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
...||.||.+.+- .+| -.||++..++.
T Consensus 53 ~~~LP~gWe~~~~--~~G-----~~Yy~n~~t~~ 79 (90)
T 2kxq_A 53 LGPLPPGWEIRNT--ATG-----RVYFVDHNNRT 79 (90)
T ss_dssp TCCCCSSCCEEEC--TTS-----CEEEEETTTTE
T ss_pred ccccCCCceEEEC--CCC-----CEEEEECCCCc
Confidence 3579999987642 344 57999987654
No 39
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=29.19 E-value=12 Score=29.13 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=17.7
Q ss_pred CCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
.||.||..- ...+| -.||++..++..
T Consensus 40 ~lp~gW~~~--~~~~G-----r~Yy~n~~t~~t 65 (75)
T 1o6w_A 40 LRENGWKAA--KTADG-----KVYYYNPTTRET 65 (75)
T ss_dssp HHHHTCEEE--ECTTC-----CEEEEETTTTEE
T ss_pred CCCCeEEEE--ECCCC-----CEEEEECCCCCE
Confidence 478999543 34445 479999987754
No 40
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=28.10 E-value=24 Score=25.48 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=16.1
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCC
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 42 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSG 42 (537)
..||+||.+.. ..+| -.||++-++.
T Consensus 7 ~~LP~GWe~~~--~~~g-----r~y~~n~~t~ 31 (46)
T 1jmq_A 7 VPLPAGWEMAK--TSSG-----QRYFKNHIDQ 31 (46)
T ss_dssp CCCCTTBCCBC--CSSC-----CCBEEETTTT
T ss_pred CCCCcCcEEEE--cCCC-----ceEEEEecCC
Confidence 47999997653 2333 4577776654
Done!