Query 009314
Match_columns 537
No_of_seqs 89 out of 91
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 23:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009314.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009314hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ig4a_ d.10.1.3 (A:) Methylat 99.4 9E-14 6.6E-18 112.4 4.1 45 12-57 10-55 (75)
2 d1qk9a_ d.10.1.3 (A:) Methyl-C 99.3 7.9E-13 5.7E-17 110.1 3.9 46 12-58 23-69 (92)
3 d1pina1 b.72.1.1 (A:6-39) Mito 71.1 0.7 5.1E-05 31.0 1.3 27 12-44 1-27 (34)
4 d1tk7a1 b.72.1.1 (A:1-45) Supp 67.5 0.97 7.1E-05 32.3 1.5 25 12-43 12-36 (45)
5 d1i5hw_ b.72.1.1 (W:) Ubiquiti 64.8 1.6 0.00011 31.7 2.1 26 11-43 10-35 (50)
6 d1jmqa_ b.72.1.1 (A:) Yap65 ww 64.1 1.3 9.2E-05 31.7 1.5 26 11-43 7-32 (46)
7 d2jmfa1 b.72.1.1 (A:521-553) U 58.0 2.8 0.0002 28.1 2.3 25 12-43 2-26 (33)
8 d2ysca1 b.72.1.1 (A:8-33) Amyl 44.4 3.6 0.00026 26.7 1.1 8 12-19 1-8 (26)
9 d2ho2a1 b.72.1.1 (A:253-285) A 17.3 19 0.0014 24.4 0.9 25 12-44 2-26 (33)
10 d1qcfa2 d.93.1.1 (A:146-248) H 8.9 1.3E+02 0.0093 22.3 3.5 23 33-57 65-87 (103)
No 1
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.38 E-value=9e-14 Score=112.44 Aligned_cols=45 Identities=36% Similarity=0.659 Sum_probs=42.1
Q ss_pred CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHh
Q 009314 12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVET 57 (537)
Q Consensus 12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeT 57 (537)
.||+||.+|+++|++| ++++.|.||++| +|++||||+||.+||..
T Consensus 10 ~LP~GW~re~~~Rk~g~~~gk~DvyY~sP-~Gkk~RS~~ev~~yL~~ 55 (75)
T d1ig4a_ 10 ALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP 55 (75)
T ss_dssp TTCTTCEEEEECCCSSSSTTCCEEEEECS-SSCEECSHHHHHHHHCS
T ss_pred CCCCCcEEEEEEEcCCCCCCceeEEEECC-CCCEEeCHHHHHHHhcc
Confidence 7999999999999998 567999999999 89999999999999954
No 2
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.27 E-value=7.9e-13 Score=110.11 Aligned_cols=46 Identities=39% Similarity=0.734 Sum_probs=42.7
Q ss_pred CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314 12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG 58 (537)
Q Consensus 12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG 58 (537)
.||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+..
T Consensus 23 ~Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP-~Gkk~RS~~eV~~yL~~~ 69 (92)
T d1qk9a_ 23 TLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEKV 69 (92)
T ss_dssp CSSSSCEEEECCCCCSSSCSCCCEEEEET-TTEEESSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEecCCCCCceeeEEEECC-CCCeeecHHHHHHHHHHC
Confidence 5999999999999998 468999999999 799999999999999864
No 3
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.08 E-value=0.7 Score=30.97 Aligned_cols=27 Identities=33% Similarity=0.789 Sum_probs=18.2
Q ss_pred CCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
.||+||..-+-. .+| ..||++..|+.+
T Consensus 1 ~LP~GW~~~~d~-~~G-----~~YY~n~~T~~T 27 (34)
T d1pina1 1 KLPPGWEKRMSR-SSG-----RVYYFNHITNAS 27 (34)
T ss_dssp CCCTTEEEEECT-TSC-----CEEEEETTTCCE
T ss_pred CcCCCcEEEECC-CCC-----CEEEEECCCCCE
Confidence 399999753321 123 689999988754
No 4
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=67.46 E-value=0.97 Score=32.27 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=17.4
Q ss_pred CCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
.||+||.+-+ -.+| ..||++-.++.
T Consensus 12 pLP~GWe~~~--d~~G-----~~Yyinh~t~~ 36 (45)
T d1tk7a1 12 PLPDGWEKKI--QSDN-----RVYFVNHKNRT 36 (45)
T ss_dssp SSSSSCCEEE--ETTT-----EEEEEETTTTE
T ss_pred CCCCCceEEE--CCCC-----CEEEEECCCCC
Confidence 5999995433 3345 47999887764
No 5
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=64.78 E-value=1.6 Score=31.73 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=17.5
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
..||+||.+-+ -.+| ..||++-.++.
T Consensus 10 ~pLP~gWe~~~--~~~G-----~~YY~nh~t~~ 35 (50)
T d1i5hw_ 10 GPLPPGWEERT--HTDG-----RVFFINHNIKK 35 (50)
T ss_dssp SSCSTTEEEEE--CTTS-----CEEEEETTTTE
T ss_pred CCCCCCceEEE--CCCC-----CEEEEECCCCC
Confidence 36999995443 3445 48999877654
No 6
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.07 E-value=1.3 Score=31.74 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=17.5
Q ss_pred CCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
..||+||.+-+ -.+| ..||+|-.++.
T Consensus 7 ~~LP~GWe~~~--d~~G-----~~Yyinh~t~~ 32 (46)
T d1jmqa_ 7 VPLPAGWEMAK--TSSG-----QRYFKNHIDQT 32 (46)
T ss_dssp CCCCTTBCCBC--CSSC-----CCBEEETTTTE
T ss_pred CCCCCCceEEE--CCCC-----CEEEEECCCCC
Confidence 36999995543 2344 35999987664
No 7
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=58.01 E-value=2.8 Score=28.10 Aligned_cols=25 Identities=32% Similarity=0.830 Sum_probs=16.7
Q ss_pred CCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314 12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 43 (537)
Q Consensus 12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy 43 (537)
.||+||-+-+ -.+| ..||+|=.+..
T Consensus 2 pLP~GWe~~~--d~~G-----~~Yyinh~t~~ 26 (33)
T d2jmfa1 2 PLPPGWEIRY--TAAG-----ERFFVDHNTRR 26 (33)
T ss_dssp CCCTTEEEEE--CTTS-----CEEEEETTTCC
T ss_pred ccCCCeeEEE--CCCC-----CEEEEECCCCc
Confidence 4999996543 3455 36999876543
No 8
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.41 E-value=3.6 Score=26.74 Aligned_cols=8 Identities=88% Similarity=2.062 Sum_probs=6.7
Q ss_pred CCCCCcee
Q 009314 12 GLPPGWTK 19 (537)
Q Consensus 12 ~LPdGWik 19 (537)
+||+||.+
T Consensus 1 ~LPpGW~~ 8 (26)
T d2ysca1 1 GLPPGWRK 8 (26)
T ss_dssp CCCTTEEE
T ss_pred CcCcccee
Confidence 69999974
No 9
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.25 E-value=19 Score=24.38 Aligned_cols=25 Identities=36% Similarity=0.792 Sum_probs=14.1
Q ss_pred CCCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314 12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 44 (537)
Q Consensus 12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk 44 (537)
.||+||.+ +.... -.||-.--||-.
T Consensus 2 dLPpGW~k---i~D~~-----G~YYWHiptGtt 26 (33)
T d2ho2a1 2 DLPAGWMR---VQDTS-----GTYYWHIPTGTT 26 (33)
T ss_dssp CSCTTEEE---EECSS-----CEEEEETTTTEE
T ss_pred CCCCccee---eecCC-----CceEEEecCCcc
Confidence 59999965 33322 146655445543
No 10
>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.94 E-value=1.3e+02 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=18.4
Q ss_pred cccccCCCCCceeccHHHHHHHHHh
Q 009314 33 DPYYIDPASGYIFRSMKDAVRYVET 57 (537)
Q Consensus 33 DkYY~dPvSGykFRSkkeV~rYLeT 57 (537)
..||+++ +..|.|+.++..|...
T Consensus 65 g~~~~~~--~~~F~sl~~LV~~y~~ 87 (103)
T d1qcfa2 65 GGFYISP--RSTFSTLQELVDHYKK 87 (103)
T ss_dssp SCEESSS--SSCBSSHHHHHHHHTS
T ss_pred CceeecC--CcccCCHHHHHHHHhh
Confidence 3578875 6789999999998753
Done!