BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009315
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 115 SSLSDNLFPKAESGGVFCIHGVSRSN-------ATSG-SSDLCVRRLAELLVNRNNSYA- 165
SS N+ P+ E GGVF G +RS+ ATSG + V LA+ L++ A
Sbjct: 48 SSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAI 107
Query: 166 SGKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERV 215
+G+ R+ +F + P EV R+I+K Y ++ V D+ R+
Sbjct: 108 TGQVPRRMIGTDAFQ----ETPIVEV----TRSITKHNYLVMDVEDIPRI 149
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 115 SSLSDNLFPKAESGGVFCIHGVSRSN-------ATSG-SSDLCVRRLAELLVNRNNSYA- 165
SS N+ P+ E GGVF G +RS+ ATSG + V LA+ L++ A
Sbjct: 47 SSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAI 106
Query: 166 SGKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERV 215
+G+ R+ +F + P EV R+I+K Y ++ V D+ R+
Sbjct: 107 TGQVPRRMIGTDAFQ----ETPIVEV----TRSITKHNYLVMDVEDIPRI 148
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 209 VLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPK 268
L+L V P P+ +L L+H + L +P + LETL + R + LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 269 SIWKSSTLRHLYM 281
SI + LR L +
Sbjct: 145 SIASLNRLRELSI 157
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 200 SKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVK 259
SK +L LDL + + I K L + L L +P + +L +L LD+
Sbjct: 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS 278
Query: 260 RTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL 317
+ +LP + L++ Y D + P+ +L LQ +G + PL
Sbjct: 279 HNRLTSLPAELGSCFQLKYFYFFD---NMVTTLPWEFGNLCNLQ-----FLGVEGNPL 328
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 362 NDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAI-------DIND 398
+DF P ++ G L K K T+ Y++ K P AI DI+D
Sbjct: 413 DDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDD 456
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 42 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL L L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 147
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 148 SNLTNLEHLDLSS 160
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 215 VYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSS 274
V++ + ++ + L +H F + + L+ LD+ T+++ LP + S
Sbjct: 247 VFEGLCEMSVESINLQKHY-----FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS 301
Query: 275 TLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL----NWLRNSKDLRKLG 330
TL+ L +S +F+ Q S + +L L I ++ L L N ++LR+L
Sbjct: 302 TLKKLVLSANKFENLCQI-----SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 331 LTFHFESLQDQEITKWIKDLEHLESLML 358
L+ H + +++L HL+SL L
Sbjct: 357 LS-HDDIETSDCCNLQLRNLSHLQSLNL 383
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 40 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL + L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 145
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 146 SNLTNLEHLDLSS 158
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 41 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL + L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 146
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 147 SNLTNLEHLDLSS 159
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 64 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL + L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 169
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 170 SNLTNLEHLDLSS 182
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 40 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL + L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 145
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 146 SNLTNLEHLDLSS 158
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 40 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL + L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 145
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 146 SNLTNLEHLDLSS 158
>pdb|3MER|A Chain A, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|3MER|B Chain B, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|2KW5|A Chain A, Solution Nmr Structure Of The Slr1183 Protein From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
Length = 202
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 111 CRVPSSLSDNLFPKA----ESGGVFCIHGVSRSN---ATSGSSDL 148
C +PSSL L+PK + GGVF + G + T G DL
Sbjct: 103 CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDL 147
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 41 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL + L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 146
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 147 SNLTNLEHLDLSS 159
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 230 LRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKS-STLRHLYMSDIRFQL 288
LRH+G ++F P L+ LD+ R I T+ ++S S L L ++ Q
Sbjct: 42 LRHLG-SYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 289 SAQKPFVN-SSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI 347
A F SSL KL + L ++ P+ L K L++L + + +Q ++ ++
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNL--IQSFKLPEYF 147
Query: 348 KDLEHLESLMLRS 360
+L +LE L L S
Sbjct: 148 SNLTNLEHLDLSS 160
>pdb|3BBO|F Chain F, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 259
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 335 FESLQDQEITK---------WIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTEL 384
+ ++D+++TK I L HL+ L+S++ F LDFG L K L ++
Sbjct: 95 YRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDV 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,193,302
Number of Sequences: 62578
Number of extensions: 606427
Number of successful extensions: 1461
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 73
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)