Query 009315
Match_columns 537
No_of_seqs 379 out of 4095
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 23:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-51 4.9E-56 434.8 18.7 459 1-485 366-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.1E-41 4.5E-46 378.2 22.2 453 6-509 401-904 (1153)
3 PLN00113 leucine-rich repeat r 100.0 6.2E-31 1.4E-35 294.2 14.7 346 167-525 89-453 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.3E-29 2.8E-34 283.7 14.5 305 204-526 92-430 (968)
5 KOG0444 Cytoskeletal regulator 99.9 4.9E-29 1.1E-33 241.1 -5.1 299 167-512 74-376 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 6.7E-28 1.5E-32 233.3 -7.0 302 204-527 31-342 (1255)
7 KOG4194 Membrane glycoprotein 99.9 3.6E-26 7.8E-31 219.8 1.4 330 171-523 78-439 (873)
8 KOG4194 Membrane glycoprotein 99.9 2.3E-25 4.9E-30 214.3 0.4 312 205-530 78-422 (873)
9 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.7E-27 227.7 15.5 281 171-489 589-907 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 2.5E-25 5.5E-30 205.0 -10.5 198 168-389 65-285 (565)
11 KOG0618 Serine/threonine phosp 99.8 4.2E-23 9.2E-28 209.0 -2.7 333 173-528 47-480 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 9.4E-24 2E-28 194.8 -8.5 127 204-336 182-309 (565)
13 KOG0618 Serine/threonine phosp 99.8 2E-21 4.4E-26 197.0 -7.9 321 167-509 64-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 3.3E-18 7E-23 178.9 11.9 265 205-520 201-465 (788)
15 KOG0617 Ras suppressor protein 99.7 5.7E-19 1.2E-23 144.7 -4.4 130 204-337 55-186 (264)
16 PRK15387 E3 ubiquitin-protein 99.7 8.2E-17 1.8E-21 168.5 9.5 261 174-494 204-465 (788)
17 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.7E-23 142.7 -3.5 155 204-365 32-186 (264)
18 PRK15370 E3 ubiquitin-protein 99.7 8.1E-17 1.8E-21 169.6 7.1 244 205-508 178-425 (754)
19 PRK15370 E3 ubiquitin-protein 99.6 3.9E-16 8.4E-21 164.5 7.8 256 173-480 180-438 (754)
20 KOG4237 Extracellular matrix p 99.6 2.8E-17 6E-22 152.1 -5.4 125 175-311 71-199 (498)
21 KOG4658 Apoptotic ATPase [Sign 99.6 1.2E-14 2.6E-19 155.6 10.7 312 165-508 517-856 (889)
22 KOG4237 Extracellular matrix p 99.5 6.3E-17 1.4E-21 149.8 -8.1 129 205-335 67-199 (498)
23 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-15 2.6E-20 149.1 -2.2 84 204-287 22-121 (319)
24 cd00116 LRR_RI Leucine-rich re 99.5 9E-16 2E-20 150.0 -4.7 80 209-288 2-95 (319)
25 KOG0532 Leucine-rich repeat (L 99.2 2.2E-12 4.7E-17 125.5 -2.3 151 204-365 97-247 (722)
26 PF14580 LRR_9: Leucine-rich r 99.1 2.6E-11 5.7E-16 104.5 3.8 131 203-360 17-149 (175)
27 KOG0532 Leucine-rich repeat (L 99.1 3.3E-12 7.1E-17 124.2 -3.0 195 204-437 74-271 (722)
28 PF00931 NB-ARC: NB-ARC domain 99.0 6.3E-11 1.4E-15 113.8 2.1 67 8-74 211-286 (287)
29 KOG3207 Beta-tubulin folding c 99.0 4.5E-11 9.8E-16 112.9 0.1 229 225-508 118-364 (505)
30 COG4886 Leucine-rich repeat (L 99.0 2.7E-10 5.9E-15 114.6 5.3 104 204-310 115-219 (394)
31 PF14580 LRR_9: Leucine-rich r 99.0 7.7E-11 1.7E-15 101.6 0.8 139 216-386 8-147 (175)
32 KOG3207 Beta-tubulin folding c 99.0 4.5E-11 9.7E-16 112.9 -1.1 215 202-440 118-340 (505)
33 COG4886 Leucine-rich repeat (L 99.0 3.2E-10 6.9E-15 114.2 4.4 196 209-418 97-293 (394)
34 KOG4341 F-box protein containi 98.9 5.3E-11 1.1E-15 111.9 -4.6 298 229-529 139-457 (483)
35 KOG2120 SCF ubiquitin ligase, 98.9 3E-11 6.6E-16 108.5 -6.1 90 275-366 186-275 (419)
36 KOG1259 Nischarin, modulator o 98.8 6.1E-10 1.3E-14 100.3 0.5 133 322-492 282-416 (490)
37 KOG1909 Ran GTPase-activating 98.8 5.2E-10 1.1E-14 103.0 -0.2 247 204-487 29-310 (382)
38 KOG1259 Nischarin, modulator o 98.8 2.6E-10 5.6E-15 102.6 -2.4 82 205-287 284-365 (490)
39 KOG1909 Ran GTPase-activating 98.8 4.9E-10 1.1E-14 103.2 -1.0 115 168-288 27-171 (382)
40 PLN03150 hypothetical protein; 98.6 5.5E-08 1.2E-12 102.7 7.4 82 207-288 420-504 (623)
41 PF13855 LRR_8: Leucine rich r 98.6 3.7E-08 8E-13 69.7 3.6 57 229-285 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.6 5.1E-08 1.1E-12 69.0 3.5 59 205-263 1-61 (61)
43 PLN03150 hypothetical protein; 98.5 9.6E-08 2.1E-12 100.9 5.9 106 252-362 419-526 (623)
44 KOG0531 Protein phosphatase 1, 98.5 9.4E-09 2E-13 103.7 -2.8 82 206-288 73-154 (414)
45 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.8E-13 102.7 -2.1 264 205-489 49-319 (414)
46 KOG2120 SCF ubiquitin ligase, 98.4 3.7E-09 8E-14 95.3 -6.8 41 325-365 287-327 (419)
47 KOG4341 F-box protein containi 98.3 1.5E-08 3.2E-13 95.7 -6.4 297 207-507 140-461 (483)
48 PF12799 LRR_4: Leucine Rich r 98.3 7.2E-07 1.6E-11 57.7 3.3 38 229-266 2-39 (44)
49 KOG2982 Uncharacterized conser 98.3 6.8E-08 1.5E-12 87.3 -2.8 210 229-467 46-265 (418)
50 KOG1859 Leucine-rich repeat pr 98.2 4.5E-08 9.8E-13 98.6 -6.4 123 208-336 167-291 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.1 2E-06 4.4E-11 55.6 2.6 41 205-245 1-41 (44)
52 COG5238 RNA1 Ran GTPase-activa 98.1 1.2E-06 2.7E-11 78.3 1.7 249 204-489 29-317 (388)
53 KOG1859 Leucine-rich repeat pr 98.0 1E-07 2.2E-12 96.1 -7.1 106 204-313 186-292 (1096)
54 PRK15386 type III secretion pr 97.9 2.4E-05 5.3E-10 76.2 7.6 132 204-360 51-186 (426)
55 KOG4579 Leucine-rich repeat (L 97.9 5.2E-07 1.1E-11 72.2 -3.1 99 206-307 28-130 (177)
56 KOG3665 ZYG-1-like serine/thre 97.9 3.5E-06 7.5E-11 89.0 1.2 84 204-288 147-234 (699)
57 KOG1644 U2-associated snRNP A' 97.8 3E-05 6.5E-10 66.7 4.4 104 402-509 42-151 (233)
58 KOG2982 Uncharacterized conser 97.8 6.7E-06 1.4E-10 74.7 0.4 82 424-506 197-287 (418)
59 KOG4579 Leucine-rich repeat (L 97.7 5.5E-06 1.2E-10 66.5 -0.7 85 204-288 52-137 (177)
60 KOG3665 ZYG-1-like serine/thre 97.7 2.1E-05 4.5E-10 83.2 3.1 103 205-309 122-229 (699)
61 KOG1644 U2-associated snRNP A' 97.7 4.1E-05 8.9E-10 65.9 3.8 104 229-334 43-150 (233)
62 PRK15386 type III secretion pr 97.5 0.00019 4E-09 70.2 6.4 138 346-508 47-187 (426)
63 KOG1947 Leucine rich repeat pr 97.4 9.4E-06 2E-10 84.2 -4.5 237 227-511 187-440 (482)
64 COG5238 RNA1 Ran GTPase-activa 97.3 0.00026 5.7E-09 63.8 4.2 242 170-462 29-314 (388)
65 KOG2123 Uncharacterized conser 97.0 3.6E-05 7.8E-10 69.4 -3.7 80 204-285 18-99 (388)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00042 9E-09 62.4 1.5 61 226-287 41-104 (260)
67 KOG2739 Leucine-rich acidic nu 96.7 0.00054 1.2E-08 61.7 0.9 113 247-360 39-152 (260)
68 KOG3864 Uncharacterized conser 96.4 0.00011 2.4E-09 63.3 -5.1 61 448-508 122-186 (221)
69 KOG2123 Uncharacterized conser 96.4 7.7E-05 1.7E-09 67.3 -6.4 95 404-504 21-123 (388)
70 PF00560 LRR_1: Leucine Rich R 96.3 0.0019 4.1E-08 34.6 0.9 17 230-246 2-18 (22)
71 PF00560 LRR_1: Leucine Rich R 96.2 0.0019 4.2E-08 34.6 0.9 21 252-272 1-21 (22)
72 KOG1947 Leucine rich repeat pr 95.7 0.0022 4.7E-08 66.5 -0.6 107 401-507 213-330 (482)
73 KOG0473 Leucine-rich repeat pr 95.6 0.00031 6.8E-09 61.8 -6.3 85 204-288 41-125 (326)
74 PF13306 LRR_5: Leucine rich r 95.2 0.036 7.8E-07 45.6 4.9 96 204-306 11-109 (129)
75 PF13504 LRR_7: Leucine rich r 95.1 0.014 3.1E-07 28.9 1.4 15 252-266 2-16 (17)
76 PF13504 LRR_7: Leucine rich r 94.7 0.019 4.1E-07 28.4 1.2 16 229-244 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 93.3 0.0023 5E-08 56.5 -6.1 87 222-311 36-122 (326)
78 PF13306 LRR_5: Leucine rich r 93.2 0.21 4.6E-06 40.9 5.6 100 169-283 10-112 (129)
79 KOG3864 Uncharacterized conser 92.4 0.015 3.2E-07 50.6 -2.4 88 402-489 101-190 (221)
80 smart00370 LRR Leucine-rich re 91.9 0.13 2.8E-06 28.7 1.8 19 251-269 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 91.9 0.13 2.8E-06 28.7 1.8 19 251-269 2-20 (26)
82 smart00370 LRR Leucine-rich re 91.2 0.14 3.1E-06 28.5 1.6 20 227-246 1-20 (26)
83 smart00369 LRR_TYP Leucine-ric 91.2 0.14 3.1E-06 28.5 1.6 20 227-246 1-20 (26)
84 KOG4308 LRR-containing protein 82.5 0.032 6.8E-07 56.9 -7.9 157 204-360 114-299 (478)
85 KOG4308 LRR-containing protein 82.2 0.019 4.1E-07 58.5 -9.6 182 207-388 89-299 (478)
86 smart00364 LRR_BAC Leucine-ric 79.6 1.2 2.7E-05 24.7 1.3 17 229-245 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 74.3 2.4 5.2E-05 23.6 1.5 14 251-264 2-15 (26)
88 PF13516 LRR_6: Leucine Rich r 74.2 2 4.3E-05 23.2 1.2 14 251-264 2-15 (24)
89 smart00367 LRR_CC Leucine-rich 72.7 2.7 5.8E-05 23.3 1.5 15 497-511 1-15 (26)
90 KOG3763 mRNA export factor TAP 63.5 1.8 4E-05 43.8 -0.7 79 402-481 218-307 (585)
91 KOG3763 mRNA export factor TAP 58.1 4.2 9.1E-05 41.4 0.7 57 401-457 243-307 (585)
92 smart00368 LRR_RI Leucine rich 53.3 10 0.00022 21.4 1.5 12 229-240 3-14 (28)
93 PF09328 Phytochelatin_C: Doma 39.8 56 0.0012 29.9 4.7 62 10-90 15-87 (264)
94 PF14162 YozD: YozD-like prote 37.8 33 0.00072 22.4 2.2 21 79-99 9-29 (57)
95 PF05725 FNIP: FNIP Repeat; I 33.0 83 0.0018 19.9 3.6 10 400-409 32-41 (44)
96 PRK04841 transcriptional regul 32.9 83 0.0018 35.6 6.1 81 24-125 251-332 (903)
97 PF15385 SARG: Specifically an 29.3 26 0.00057 35.8 1.1 16 31-46 7-22 (497)
98 cd04438 DEP_dishevelled DEP (D 25.9 1.8E+02 0.004 21.7 4.8 60 33-103 12-71 (84)
99 PF09150 Carot_N: Orange carot 25.8 1.3E+02 0.0027 25.5 4.3 56 26-96 86-141 (159)
100 cd04443 DEP_GPR155 DEP (Dishev 25.1 1.7E+02 0.0036 21.8 4.5 39 56-102 32-70 (83)
101 cd04441 DEP_2_DEP6 DEP (Dishev 23.5 1.7E+02 0.0038 21.9 4.3 38 57-102 35-72 (85)
102 COG3432 Predicted transcriptio 21.8 2.7E+02 0.0058 21.4 5.0 39 79-120 43-81 (95)
103 cd04440 DEP_2_P-Rex DEP (Dishe 21.2 2E+02 0.0044 22.0 4.3 39 57-103 40-78 (93)
104 PF00610 DEP: Domain found in 21.2 1.9E+02 0.0041 20.5 4.2 41 55-103 18-60 (74)
105 cd04448 DEP_PIKfyve DEP (Dishe 20.7 2.3E+02 0.005 20.9 4.5 40 56-103 30-69 (81)
106 PF13463 HTH_27: Winged helix 20.3 2.1E+02 0.0046 19.6 4.2 29 84-112 35-63 (68)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-51 Score=434.78 Aligned_cols=459 Identities=25% Similarity=0.321 Sum_probs=332.4
Q ss_pred CCCCCCCChhhHHHHHhhcCh----------hhhhhHHHHhcCCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhccc
Q 009315 1 MSGKKQGALDDQSTTLDQLSF----------RDISSIWVFANKSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLE 70 (537)
Q Consensus 1 m~~~~~~~~~~W~~~l~~~~~----------~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i 70 (537)
||+|+ +.+||+++.+.+.+ +.|+++|++|||.||+++|.||+|||+|||||+|++++||.+||||||+
T Consensus 366 ma~K~--t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi 443 (889)
T KOG4658|consen 366 LACKK--TVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFI 443 (889)
T ss_pred hcCCC--cHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCc
Confidence 67777 78899999998865 3599999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHhhccceEeeecCCCCCeeEEEcChhHHHHHhhhhh-----cCCcEEEeCCCCCccccCC
Q 009315 71 TPIEENYMAPEDQVKTIFDQLELMNMIEVVKRKPDGKPKTCRVPSSLSDNLFPKAE-----SGGVFCIHGVSRSNATSGS 145 (537)
Q Consensus 71 ~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 145 (537)
.+..+.. +++|+|.+|+.+||++++++..+.. ++..+|+|||+|||||.++|+ +|+++...+......+...
T Consensus 444 ~~~~~~~-~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~ 520 (889)
T KOG4658|consen 444 DPLDGGE-TAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVK 520 (889)
T ss_pred Ccccccc-chhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcccccccc
Confidence 9966555 9999999999999999999887643 566799999999999999999 6775555443444444555
Q ss_pred CCCceeEEEEeecccCCccCCCCCcCceeEEEeccCC--CCCCChhhhhhhhhhhccccCCceeeEEEcCCC-CCCCCch
Q 009315 146 SDLCVRRLAELLVNRNNSYASGKHLERLHSYLSFDNR--KGDKPAAEVGNLLNRTISKRGYRLLRVLDLERV-YKPVLPE 222 (537)
Q Consensus 146 ~~~~~~~ls~~~~~~~~~~~~~~~~~~Lr~l~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~lp~ 222 (537)
.+..+||++. +.......+.....++|+||++..+. ...++.++|.. ++.||||||++| .+..+|.
T Consensus 521 ~~~~~rr~s~-~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~----------m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 521 SWNSVRRMSL-MNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRS----------LPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred chhheeEEEE-eccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhh----------CcceEEEECCCCCccCcCCh
Confidence 6788999986 44444455556677789999888775 56667665554 899999999965 6789999
Q ss_pred hhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCc-cccCCccccccccccEEeccccccccccCCCccCCcccc
Q 009315 223 TIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTN-IATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTK 301 (537)
Q Consensus 223 ~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 301 (537)
++++|.+||||+++++.+..+|.++++|..|.+|++..+. +..+|..+..|++|++|.+....... -...++.+.+
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~ 666 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELEN 666 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHhhhc
Confidence 9999999999999999999999999999999999999994 44666666669999999998765322 1223344444
Q ss_pred ccccceEEecCCC-CchHHhhcCccCcE----EeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCC
Q 009315 302 LQTLWGLLIGKKS-RPLNWLRNSKDLRK----LGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLS 376 (537)
Q Consensus 302 L~~L~~~~~~~~~-~~~~~l~~l~~L~~----L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 376 (537)
|++|....+.... .+...+..++.|.. +.+.++... ..+..+..+.+|+.|.+.+|......... .....
T Consensus 667 Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~----~~~~~~~~l~~L~~L~i~~~~~~e~~~~~-~~~~~ 741 (889)
T KOG4658|consen 667 LEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR----TLISSLGSLGNLEELSILDCGISEIVIEW-EESLI 741 (889)
T ss_pred ccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc----eeecccccccCcceEEEEcCCCchhhccc-ccccc
Confidence 4444443333322 12223444444443 332222222 55667888999999999997765322111 11111
Q ss_pred ---CCCCcceEEEee-ecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCcc
Q 009315 377 ---KHKKLTELYLIG-KLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQ 452 (537)
Q Consensus 377 ---~~~~L~~l~l~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 452 (537)
.++++..+.+.. ..+..+.| ..+|++|+.|++..|.....+++....+..+..+.+..+.+.+.......++|++
T Consensus 742 ~~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 742 VLLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred hhhhHHHHHHHHhhccccccccch-hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence 123444444433 34556665 4567999999999999888888888888888877676666665533334667777
Q ss_pred ccEEEeccCCCCceeEeCC----Cccccccccccccc
Q 009315 453 LLVLKLWVLKELKRWSIEK----ETMPKLRELEIRRC 485 (537)
Q Consensus 453 L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~l~~c 485 (537)
+..+.+.+- .++.|.... +.+|.+.++.+.+|
T Consensus 821 i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 821 LYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred eEecccCcc-chhheehhcCcccccCccccccceecc
Confidence 766666553 255444443 45566666666664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-41 Score=378.22 Aligned_cols=453 Identities=16% Similarity=0.104 Sum_probs=305.8
Q ss_pred CCChhhHHHHHhhcCh---hhhhhHHHHhcCCCcH-hHHHHhhhhccCCCCcccchhhHHHHHHHhcccccccCCCCChH
Q 009315 6 QGALDDQSTTLDQLSF---RDISSIWVFANKSLSP-HLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEENYMAPE 81 (537)
Q Consensus 6 ~~~~~~W~~~l~~~~~---~~i~~~L~lSY~~L~~-~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~ 81 (537)
.++.++|+.+++++.+ ++|+++|++|||+|++ ..|.||+|||+||.++.+ +.|..|+|.+.+....
T Consensus 401 ~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~~------- 470 (1153)
T PLN03210 401 GRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVNI------- 470 (1153)
T ss_pred CCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCchh-------
Confidence 3478999999999876 5799999999999987 599999999999998754 4577888887653321
Q ss_pred HHHHHHHHHHhhccceEeeecCCCCCeeEEEcChhHHHHHhhhhhcCC-------cEEEeCCCCCccccCCCCCceeEEE
Q 009315 82 DQVKTIFDQLELMNMIEVVKRKPDGKPKTCRVPSSLSDNLFPKAESGG-------VFCIHGVSRSNATSGSSDLCVRRLA 154 (537)
Q Consensus 82 ~~g~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ls 154 (537)
-++.|++++|++... ..++|||++|+||+++++++. ++....+.+.......+..+++.++
T Consensus 471 -----~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 471 -----GLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred -----ChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence 288999999998743 258999999999999997753 3322222222223344556788887
Q ss_pred EeecccCC-ccCC--CCCcCceeEEEeccCC-------CCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhh
Q 009315 155 ELLVNRNN-SYAS--GKHLERLHSYLSFDNR-------KGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETI 224 (537)
Q Consensus 155 ~~~~~~~~-~~~~--~~~~~~Lr~l~~~~~~-------~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~ 224 (537)
..+..... .+.. +..+.+|+.|.++++. ...+|.+ +..+ ...||.|++.++.++.+|..+
T Consensus 539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~l---------p~~Lr~L~~~~~~l~~lP~~f 608 (1153)
T PLN03210 539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYL---------PPKLRLLRWDKYPLRCMPSNF 608 (1153)
T ss_pred eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhc---------CcccEEEEecCCCCCCCCCcC
Confidence 65443221 1111 5668888888765432 1223432 2221 246888888888888888777
Q ss_pred ccccccceeecCCCCCCccCcccCCCCCCcEEeecCC-ccccCCccccccccccEEeccccccccccCCCccCCcccccc
Q 009315 225 GKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRT-NIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQ 303 (537)
Q Consensus 225 ~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 303 (537)
...+|+.|+++++.+..+|.++..+++|++|+++++ .++.+| .++.+++|++|++++|.... .+|..++++++|+
T Consensus 609 -~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~ 684 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV--ELPSSIQYLNKLE 684 (1153)
T ss_pred -CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc--ccchhhhccCCCC
Confidence 467888888888888888888888888888888887 466776 47788888888888877655 5777888888888
Q ss_pred ccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcce
Q 009315 304 TLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTE 383 (537)
Q Consensus 304 ~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~ 383 (537)
.|++.+|.....+|..+ ++++|+.|++++|.... .+|. ...+|+.|+++++. +... +....+++|+.
T Consensus 685 ~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~---~~p~---~~~nL~~L~L~~n~-i~~l-----P~~~~l~~L~~ 751 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK---SFPD---ISTNISWLDLDETA-IEEF-----PSNLRLENLDE 751 (1153)
T ss_pred EEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc---cccc---ccCCcCeeecCCCc-cccc-----ccccccccccc
Confidence 88888776666666554 68888888888876443 4443 23578888887733 3221 11113455555
Q ss_pred EEEeee--------cCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccE
Q 009315 384 LYLIGK--------LPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLV 455 (537)
Q Consensus 384 l~l~~~--------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 455 (537)
|.+.+. ...........|++|+.|++++|.....+|..++++++|+.|+|++|...+..|.. ..+++|+.
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~ 829 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLES 829 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCE
Confidence 555431 10111111223467888888888766677888888888888888887655544433 25677777
Q ss_pred EEeccCCCCceeE--------------------eCCCcccccccccccccccCC-CccccCCCCCCCEEEEecCc
Q 009315 456 LKLWVLKELKRWS--------------------IEKETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 456 L~l~~~~~l~~~~--------------------~~~~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l~~c~ 509 (537)
|++++|..+..++ ...+.+++|+.|++.+|+.+. +|..+..+++|+.+++++|+
T Consensus 830 L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 7777776655443 223345566666666666655 55555566666666666665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=6.2e-31 Score=294.17 Aligned_cols=346 Identities=21% Similarity=0.175 Sum_probs=217.4
Q ss_pred CCCcCceeEEEeccCC-CCCCChhhhhhh------------hhhhccccCCceeeEEEcCCCCCC-CCchhhccccccce
Q 009315 167 GKHLERLHSYLSFDNR-KGDKPAAEVGNL------------LNRTISKRGYRLLRVLDLERVYKP-VLPETIGKLRLLRH 232 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~-~~~~p~~~~~~~------------~~~~~~~~~~~~L~~L~L~~~~~~-~lp~~~~~l~~L~~ 232 (537)
...+++|+.|.+.++. .+.+|...+... +.+.++...+++|++|++++|.+. .+|..++++++|++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 3456666666665443 335565533221 111122234667777777766554 56777778888888
Q ss_pred eecCCCCC-CccCcccCCCCCCcEEeecCCccc-cCCccccccccccEEeccccccccccCCCccCCccccccccceEEe
Q 009315 233 VGLRWTFL-DSIPKSLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLI 310 (537)
Q Consensus 233 L~l~~~~i-~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~ 310 (537)
|++++|.+ +.+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+ .+|..++++++|++|++..|
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCEEECcCc
Confidence 88887766 467777778888888888888776 677777788888888888877776 56777778888888888777
Q ss_pred cCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeec
Q 009315 311 GKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKL 390 (537)
Q Consensus 311 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 390 (537)
...+..|..++++++|+.|++++|.+.+ .+|..+.++++|+.|++++| .+.+..+. .+..+++|+.+++.++.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~---~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSG---PIPPSIFSLQKLISLDLSDN-SLSGEIPE---LVIQLQNLEILHLFSNN 319 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeec---cCchhHhhccCcCEEECcCC-eeccCCCh---hHcCCCCCcEEECCCCc
Confidence 7766777777888888888887777765 56667777778888888763 33333222 23345667777765531
Q ss_pred C--CcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeE
Q 009315 391 P--RAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWS 468 (537)
Q Consensus 391 ~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 468 (537)
- ..+..+..+ ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+.. +..+++|+.|++.+|.....++
T Consensus 320 ~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 320 FTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred cCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCC
Confidence 1 111122233 67777777777777777777777777777777777776544433 4445566666666554444444
Q ss_pred eCCCcccccccccccccccCC-CccccCCCCCCCEEEEecCchHHHHHHHhhccCccc
Q 009315 469 IEKETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVN 525 (537)
Q Consensus 469 ~~~~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~ 525 (537)
...+.+++|+.|++++|.... +|..+..+++|+.|++++ |.+.+.++..+..+++
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN--NNLQGRINSRKWDMPS 453 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC--CcccCccChhhccCCC
Confidence 444555666666666665554 555555555666666555 3344444443333333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.3e-29 Score=283.65 Aligned_cols=305 Identities=26% Similarity=0.271 Sum_probs=167.7
Q ss_pred CceeeEEEcCCCCCC-CCchhhc-cccccceeecCCCCCC-ccCcccCCCCCCcEEeecCCccc-cCCccccccccccEE
Q 009315 204 YRLLRVLDLERVYKP-VLPETIG-KLRLLRHVGLRWTFLD-SIPKSLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRHL 279 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~-~lp~~~~-~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L 279 (537)
+++|++|+|++|.+. .+|..+. .+++|++|++++|.+. .+|. +.+++|++|++++|.+. .+|..++++++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 677788888776654 5666544 7777777777777663 4443 34666666666666665 566666666666666
Q ss_pred eccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEE
Q 009315 280 YMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLR 359 (537)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 359 (537)
++++|.+.+ ..|..++++++|++|++..|...+..|..++++++|+.|++++|.+.+ .+|..+.++++|+.|+++
T Consensus 170 ~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 170 DLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---EIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred ECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC---cCChhHhcCCCCCEEECc
Confidence 666666655 455666666666666666666555566666666666666666666554 455556666666666666
Q ss_pred eeCCCCCCCccccCCCCCCCCcceEEEeee-----cCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEec
Q 009315 360 SVNDFLEPSDLDFGNLSKHKKLTELYLIGK-----LPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLF 434 (537)
Q Consensus 360 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~-----~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 434 (537)
+| .+.+..+. .+..+++|+.|++.++ +|..+ ..+ ++|+.|++++|.+.+.+|..++++++|+.|+++
T Consensus 245 ~n-~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 245 YN-NLTGPIPS---SLGNLKNLQYLFLYQNKLSGPIPPSI---FSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred Cc-eeccccCh---hHhCCCCCCEEECcCCeeeccCchhH---hhc-cCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 53 22222221 2233344555544332 22211 222 455555555555554555555555555555555
Q ss_pred cccccCceeeecCCCCccccEEEeccCCCCceeEeCCCc------------------------ccccccccccccccCC-
Q 009315 435 AHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKET------------------------MPKLRELEIRRCQKLK- 489 (537)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~------------------------~~~L~~L~l~~c~~l~- 489 (537)
+|.+.+..+.. +..+++|+.|++++|.....++...+. +++|+.|++.+|....
T Consensus 317 ~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 317 SNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred CCccCCcCChh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 55554433332 444555555555554333333333334 4455555555555444
Q ss_pred CccccCCCCCCCEEEEecCchHHHHHHHhhccCccce
Q 009315 490 NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNV 526 (537)
Q Consensus 490 lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l 526 (537)
+|..+..+++|+.|++++ |.+.+.+|..+..++++
T Consensus 396 ~p~~~~~~~~L~~L~L~~--n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQD--NSFSGELPSEFTKLPLV 430 (968)
T ss_pred CCHHHhCCCCCCEEECcC--CEeeeECChhHhcCCCC
Confidence 555555556666666665 23444445544444443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=4.9e-29 Score=241.10 Aligned_cols=299 Identities=22% Similarity=0.198 Sum_probs=248.6
Q ss_pred CCCcCceeEEEeccCCC--CCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccC
Q 009315 167 GKHLERLHSYLSFDNRK--GDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIP 244 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp 244 (537)
...++.||++++..|.. ..+|.+.|. +..|.+||||+|.++..|..+..-+++-.|+|++|+|++||
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~-----------l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIP 142 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFR-----------LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIP 142 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcc-----------cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCC
Confidence 66788999987755432 356766333 78999999999999999999999999999999999999999
Q ss_pred ccc-CCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCC-CCchHHhhc
Q 009315 245 KSL-GDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKK-SRPLNWLRN 322 (537)
Q Consensus 245 ~~l-~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~-~~~~~~l~~ 322 (537)
..+ -+|..|-.|||++|.+..+|+.+..|..|+.|++++|.+.. .-...+..|++|++|.+++.... ..+|..+..
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h--fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH--FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH--HHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 774 58899999999999999999999999999999999998766 22234556677777777665543 357888999
Q ss_pred CccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCC
Q 009315 323 SKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPE 402 (537)
Q Consensus 323 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~ 402 (537)
+.+|+.++++.|++. .+|+.+.++++|+.|+|++ |.++. |.+. . -.| .
T Consensus 221 l~NL~dvDlS~N~Lp----~vPecly~l~~LrrLNLS~-N~ite-----------------L~~~--~---~~W-----~ 268 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP----IVPECLYKLRNLRRLNLSG-NKITE-----------------LNMT--E---GEW-----E 268 (1255)
T ss_pred hhhhhhccccccCCC----cchHHHhhhhhhheeccCc-Cceee-----------------eecc--H---HHH-----h
Confidence 999999999999988 7899999999999999998 44432 1111 0 012 6
Q ss_pred CeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccc
Q 009315 403 KLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEI 482 (537)
Q Consensus 403 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 482 (537)
+|+.|+++.|+++ ..|..+..+++|+.|.+.+|+++-+.+++.++.+.+|+.+...+| .++-+|.....|++|+.|.+
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcc
Confidence 8999999999988 789999999999999999999877767777999999999999886 78888888889999999999
Q ss_pred cccccCCCccccCCCCCCCEEEEecCchHH
Q 009315 483 RRCQKLKNPFESTNLTGLKELTLTDMEKSF 512 (537)
Q Consensus 483 ~~c~~l~lp~~~~~l~~L~~L~l~~c~n~~ 512 (537)
..|...++|+.|.-++.|+.|++...||..
T Consensus 347 ~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 347 DHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cccceeechhhhhhcCCcceeeccCCcCcc
Confidence 999988899999999999999999987653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.7e-28 Score=233.31 Aligned_cols=302 Identities=21% Similarity=0.217 Sum_probs=210.2
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccc--cCCccccccccccEEec
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIA--TLPKSIWKSSTLRHLYM 281 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l 281 (537)
|+.+++|.|....+..+|..++.+.+|.+|.+++|++.++-..++.|+.|+.+++++|+++ .+|..|.+|..|..||+
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 6777777777777777777777777777777777777777666777777777777777766 67777777777777777
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEee
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSV 361 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 361 (537)
++|++.. .|..+..-.++-.|++++|.+......-+.+++.|-.|++++|++. .+|..+..+.+|++|.|++
T Consensus 111 ShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe----~LPPQ~RRL~~LqtL~Ls~- 182 (1255)
T KOG0444|consen 111 SHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE----MLPPQIRRLSMLQTLKLSN- 182 (1255)
T ss_pred chhhhhh---cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh----hcCHHHHHHhhhhhhhcCC-
Confidence 7777766 6677777777777777777765322234567777777788877776 6777777777888888876
Q ss_pred CCCCCCCccccCCCCCCCCcceEEEee------ecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecc
Q 009315 362 NDFLEPSDLDFGNLSKHKKLTELYLIG------KLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFA 435 (537)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~L~~l~l~~------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 435 (537)
|-+.. ..+..+..+.+|+.|++++ ++|..+..+ .+|..++++.|.+. ..|..+-.+++|+.|+|++
T Consensus 183 NPL~h---fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l----~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 183 NPLNH---FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL----HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred ChhhH---HHHhcCccchhhhhhhcccccchhhcCCCchhhh----hhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence 32221 1233444556666667765 345555442 77888888888876 6788888888888888888
Q ss_pred ccccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCC--CccccCCCCCCCEEEEecCchHHH
Q 009315 436 HSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK--NPFESTNLTGLKELTLTDMEKSFE 513 (537)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~--lp~~~~~l~~L~~L~l~~c~n~~~ 513 (537)
|.++... ...+.-.+|++|.++.| .+..+|.....+|+|+.|.+.+|...- +|.+|+.+.+|+++..++ | ..
T Consensus 255 N~iteL~--~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan--N-~L 328 (1255)
T KOG0444|consen 255 NKITELN--MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN--N-KL 328 (1255)
T ss_pred Cceeeee--ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc--c-cc
Confidence 8886532 22455667788888776 566666666677777777777766543 777777777777777665 2 24
Q ss_pred HHHHhhccCccceE
Q 009315 514 DEVKQSLAGTVNVV 527 (537)
Q Consensus 514 ~~~~~~~~~~~~l~ 527 (537)
+-+|+++..|++++
T Consensus 329 ElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQ 342 (1255)
T ss_pred ccCchhhhhhHHHH
Confidence 45666666666554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.6e-26 Score=219.82 Aligned_cols=330 Identities=20% Similarity=0.163 Sum_probs=193.8
Q ss_pred CceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccC-cccCC
Q 009315 171 ERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIP-KSLGD 249 (537)
Q Consensus 171 ~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~l~~ 249 (537)
+..++|.+.+|....+..+.|.+ +++|+.+.+.+|.++.+|.......||+.|+|.+|.|.++. +++.-
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~n----------l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYN----------LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred cceeeeeccccccccCcHHHHhc----------CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHh
Confidence 34455666666666666555554 56666666666666666665555566666666666665553 23455
Q ss_pred CCCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcE
Q 009315 250 LPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRK 328 (537)
Q Consensus 250 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 328 (537)
++.|++|||+.|.++++|. .+..-.++++|+|++|.++. .-...|..+.+|.+|.+..|.+..--+..|.++++|+.
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~--l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT--LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc--cccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 5666666666666655543 23333556666666666555 33445555566666666665555444445555666666
Q ss_pred EeEEEecccccHH--------------------HH-HHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEe
Q 009315 329 LGLTFHFESLQDQ--------------------EI-TKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLI 387 (537)
Q Consensus 329 L~l~~~~~~~~~~--------------------~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~ 387 (537)
|++..|.+....- .+ -..+..+.+++.|+|.. |.+.... -+.+-.+..|+.|+++
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn---~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVN---EGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhh---cccccccchhhhhccc
Confidence 6666555432100 00 01233444555555554 2222211 1233345556666665
Q ss_pred eec-----CCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCC
Q 009315 388 GKL-----PRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 388 ~~~-----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 462 (537)
.+- +..++ |+++|++|+|+.|+++...+..|..|..|++|+|+.|.+.... ...+.++.+|++|+|++|.
T Consensus 302 ~NaI~rih~d~Ws----ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 302 YNAIQRIHIDSWS----FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhhhheeecchhh----hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH-hhHHHHhhhhhhhcCcCCe
Confidence 431 12222 2477888888888887777778888888888888888775432 2236778888888888874
Q ss_pred CCceeE---eCCCcccccccccccccccCCCcc-ccCCCCCCCEEEEecCchHHHHHHHhhccCc
Q 009315 463 ELKRWS---IEKETMPKLRELEIRRCQKLKNPF-ESTNLTGLKELTLTDMEKSFEDEVKQSLAGT 523 (537)
Q Consensus 463 ~l~~~~---~~~~~~~~L~~L~l~~c~~l~lp~-~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~ 523 (537)
.--.+. ..+..+|+|++|.+.+|+.-.+|. .+..+++|++|++.+ |-+...-|.++..+
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~--NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD--NAIASIQPNAFEPM 439 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCC--Ccceeecccccccc
Confidence 322121 123458999999999998777554 477889999999988 54544444555433
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-25 Score=214.35 Aligned_cols=312 Identities=19% Similarity=0.118 Sum_probs=223.1
Q ss_pred ceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCC-ccccccccccEEecc
Q 009315 205 RLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLP-KSIWKSSTLRHLYMS 282 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~ 282 (537)
..-++||+++|.+..+ +..|.++++|+.+++.+|.+..||...+...+|+.|+|.+|.++++. +.+..++.|+.|||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4578899999998887 67789999999999999999999997777888999999999998664 468889999999999
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeC
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVN 362 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 362 (537)
.|.++. .....+..-.++++|++..|.+...-...|..+.+|..|.++.|+++. --+..+.++++|+.|+|.. |
T Consensus 158 rN~is~--i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt---Lp~r~Fk~L~~L~~LdLnr-N 231 (873)
T KOG4194|consen 158 RNLISE--IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT---LPQRSFKRLPKLESLDLNR-N 231 (873)
T ss_pred hchhhc--ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc---cCHHHhhhcchhhhhhccc-c
Confidence 999988 566677788899999999999876666778889999999999999984 3344677799999999988 5
Q ss_pred CCCCCCccccCCCCCCCCcceEEEee------------------------e-cC-CcCCccccCCCCeeEEEEecccCCC
Q 009315 363 DFLEPSDLDFGNLSKHKKLTELYLIG------------------------K-LP-RAIDINDQLPEKLTVFTLSLSHLSK 416 (537)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~L~~l~l~~------------------------~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~ 416 (537)
.+.......+ ..+++|+.+.+.. + +. -.-+|+..+ +.|+.|+++.|.+..
T Consensus 232 ~irive~ltF---qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 232 RIRIVEGLTF---QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQR 307 (873)
T ss_pred ceeeehhhhh---cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhhe
Confidence 5543322222 2333333333311 1 00 011233444 566666666666666
Q ss_pred CchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCcee-EeCCCcccccccccccccccCC-Cc---
Q 009315 417 DPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRW-SIEKETMPKLRELEIRRCQKLK-NP--- 491 (537)
Q Consensus 417 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~-lp--- 491 (537)
..++.++.+++|++|+|++|.++...+. ++..+..|++|.|++|. +..+ ...+..+.+|++|++++|.... +.
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred eecchhhhcccceeEeccccccccCChh-HHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 6666666666666666666666553332 25566666666666652 2222 2234457888888888887665 32
Q ss_pred cccCCCCCCCEEEEecCchHHHHHHHhhccCccceEEcC
Q 009315 492 FESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVIIP 530 (537)
Q Consensus 492 ~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~lp 530 (537)
..+..+++|+.|++.| |.+...-..++.+++.|+++.
T Consensus 386 ~~f~gl~~LrkL~l~g--Nqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTG--NQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhccchhhhheeecC--ceeeecchhhhccCcccceec
Confidence 2356688999999998 666554456777777777753
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-22 Score=227.74 Aligned_cols=281 Identities=22% Similarity=0.163 Sum_probs=201.5
Q ss_pred CceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCC-CCCccCcccCC
Q 009315 171 ERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWT-FLDSIPKSLGD 249 (537)
Q Consensus 171 ~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~l~~ 249 (537)
.+||.|...++....+|..+ .+.+|+.|+++++.+..+|..+..+++|++|+++++ .++.+|. ++.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f------------~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF------------RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC------------CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 45888888877777777651 257899999999999999999999999999999986 5788886 888
Q ss_pred CCCCcEEeecCC-ccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcE
Q 009315 250 LPSLETLDVKRT-NIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRK 328 (537)
Q Consensus 250 l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 328 (537)
+++|++|++++| .+..+|..++++++|++|++++|.... .+|..+ ++++|+.|++.+|.....+|. ..++|+.
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~--~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~ 729 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE--ILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISW 729 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC--ccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCe
Confidence 999999999998 577999999999999999999986655 466655 788999998887765544443 2456777
Q ss_pred EeEEEecccccHHHHHHHhccCC-------------------------------CcceEEEEeeCCCCCCCccccCCCCC
Q 009315 329 LGLTFHFESLQDQEITKWIKDLE-------------------------------HLESLMLRSVNDFLEPSDLDFGNLSK 377 (537)
Q Consensus 329 L~l~~~~~~~~~~~~~~~l~~l~-------------------------------~L~~L~l~~~~~~~~~~~~~~~~l~~ 377 (537)
|+++++.+. .+|..+ .++ +|+.|++++|...... + ..+..
T Consensus 730 L~L~~n~i~----~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P---~si~~ 800 (1153)
T PLN03210 730 LDLDETAIE----EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-P---SSIQN 800 (1153)
T ss_pred eecCCCccc----cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc-C---hhhhC
Confidence 888777654 344332 233 4455555443322211 1 12334
Q ss_pred CCCcceEEEeee-----cCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCcc
Q 009315 378 HKKLTELYLIGK-----LPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQ 452 (537)
Q Consensus 378 ~~~L~~l~l~~~-----~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 452 (537)
+++|+.|++.++ +|... . +++|+.|++++|.....+|.. .++|+.|+|++|.+.. .|. .+..+++
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~----~-L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~-si~~l~~ 870 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI----N-LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPW-WIEKFSN 870 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC----C-ccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChH-HHhcCCC
Confidence 556666666543 12211 1 256667777666544333322 3567777777777754 333 3778999
Q ss_pred ccEEEeccCCCCceeEeCCCcccccccccccccccCC
Q 009315 453 LLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK 489 (537)
Q Consensus 453 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 489 (537)
|+.|++.+|+.++.++.....+++|+.+++++|+.+.
T Consensus 871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 9999999999999998888899999999999999887
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=2.5e-25 Score=205.02 Aligned_cols=198 Identities=25% Similarity=0.254 Sum_probs=116.2
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCccc
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSL 247 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l 247 (537)
..+..+.++.+.++.....|+. ++. +..++.|+.+.|.+..+|..++.+..|+.|+.++|.+..+|+++
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~a-ig~----------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i 133 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAA-IGE----------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI 133 (565)
T ss_pred hcccceeEEEeccchhhhCCHH-HHH----------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH
Confidence 4455566666666666666665 222 45566666676666667777777777777777777666666666
Q ss_pred CCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccC-
Q 009315 248 GDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDL- 326 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L- 326 (537)
+.+..|+.|+..+|++..+|++++++.+|..+++.+|.+.. .++..+. |+.|++|+...|... .+|.+++.+.+|
T Consensus 134 ~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~--l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA--LPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLE 209 (565)
T ss_pred HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh--CCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhH
Confidence 66667777776666666666666666666666666665554 2233222 555555554444332 344444444444
Q ss_pred ---------------------cEEeEEEecccccHHHHHHHhc-cCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceE
Q 009315 327 ---------------------RKLGLTFHFESLQDQEITKWIK-DLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTEL 384 (537)
Q Consensus 327 ---------------------~~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l 384 (537)
.+|.++.|++. .+|+... +++++..||+++ |.++..++. +.-+.+|+.+
T Consensus 210 ~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~----~lpae~~~~L~~l~vLDLRd-Nklke~Pde----~clLrsL~rL 280 (565)
T KOG0472|consen 210 LLYLRRNKIRFLPEFPGCSLLKELHVGENQIE----MLPAEHLKHLNSLLVLDLRD-NKLKEVPDE----ICLLRSLERL 280 (565)
T ss_pred HHHhhhcccccCCCCCccHHHHHHHhcccHHH----hhHHHHhcccccceeeeccc-cccccCchH----HHHhhhhhhh
Confidence 44444444444 4555444 677788888877 555433221 2234666777
Q ss_pred EEeee
Q 009315 385 YLIGK 389 (537)
Q Consensus 385 ~l~~~ 389 (537)
+++.+
T Consensus 281 DlSNN 285 (565)
T KOG0472|consen 281 DLSNN 285 (565)
T ss_pred cccCC
Confidence 77653
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=4.2e-23 Score=209.03 Aligned_cols=333 Identities=22% Similarity=0.197 Sum_probs=206.7
Q ss_pred eeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCC
Q 009315 173 LHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPS 252 (537)
Q Consensus 173 Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~ 252 (537)
|++|.+.|+..+.+|.. ...+.+|+.|.++.|.+..+|.+.+++.+|++|.|.+|.+..+|.++..+.+
T Consensus 47 L~~l~lsnn~~~~fp~~-----------it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQ-----------ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eEEeeccccccccCCch-----------hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 66777777777766643 1225677777777777777777777777777777777777777777777777
Q ss_pred CcEEeecCCccccCCccccccccccEEecccccccc-----------------ccCCCccCCccccccccceEEecCCCC
Q 009315 253 LETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQL-----------------SAQKPFVNSSLTKLQTLWGLLIGKKSR 315 (537)
Q Consensus 253 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-----------------~~~~~~~~~~l~~L~~L~~~~~~~~~~ 315 (537)
|++|++++|.+..+|..+..++.+..+..++|.... ...++..+..+.. .|++.+|.....
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~ 193 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL 193 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence 777777777777777777766666666666651110 0011111222222 133322221100
Q ss_pred ch---------------------------------------HHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceE
Q 009315 316 PL---------------------------------------NWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESL 356 (537)
Q Consensus 316 ~~---------------------------------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 356 (537)
.. ..-.--.+|+.++++.+++. .+|+++..+.+|+.+
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~----~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS----NLPEWIGACANLEAL 269 (1081)
T ss_pred hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh----cchHHHHhcccceEe
Confidence 00 00000123444444444443 455666666666666
Q ss_pred EEEeeCCCCCCCc-------------------cccCCCCCCCCcceEEEeee-cCCcC----------------------
Q 009315 357 MLRSVNDFLEPSD-------------------LDFGNLSKHKKLTELYLIGK-LPRAI---------------------- 394 (537)
Q Consensus 357 ~l~~~~~~~~~~~-------------------~~~~~l~~~~~L~~l~l~~~-~~~~~---------------------- 394 (537)
.... |.+..... ..-..+.....|+.|++..+ ++..+
T Consensus 270 ~~n~-N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 270 NANH-NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred cccc-hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 6655 22211000 00112233456666666331 11111
Q ss_pred ---CccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCC
Q 009315 395 ---DINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEK 471 (537)
Q Consensus 395 ---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 471 (537)
..-....+.|+.|++.+|.+++...+.+.+.++|+.|+|++|.+.. .|...+..++.|++|.|+|| .++.++...
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~tv 426 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGN-KLTTLPDTV 426 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccc-hhhhhhHHH
Confidence 0000111468889999999998888899999999999999998854 46666889999999999998 778888777
Q ss_pred CcccccccccccccccCCCccccCCCCCCCEEEEecCchHHHHHHHhhccCccceEE
Q 009315 472 ETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 472 ~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~ 528 (537)
..++.|++|...+|..+.+| .+..+++|+.+|++. |.+....-.....+++|++
T Consensus 427 a~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~--N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC--NNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred HhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc--chhhhhhhhhhCCCcccce
Confidence 88999999999999888888 788899999999998 6766644433334455554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=9.4e-24 Score=194.75 Aligned_cols=127 Identities=23% Similarity=0.166 Sum_probs=81.0
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCcccc-ccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIW-KSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~l~ 282 (537)
|+.|+.||...|.++.+|+.++.+..|..|++++|+|..+| +|.++..|.+|.++.|.++.+|..+. .++++..||+.
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 45566666666666666666666666666666666666666 36666666666666666666666554 56666666666
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecc
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFE 336 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 336 (537)
+|++.. .|.++..+.+|..|++++|.++ .+|..++++ .|+.|-+.+|.+
T Consensus 261 dNklke---~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 261 DNKLKE---VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccccc---CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 666665 5666666666666666666654 455666666 666666666653
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=2e-21 Score=197.01 Aligned_cols=321 Identities=21% Similarity=0.227 Sum_probs=206.4
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS 246 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~ 246 (537)
...+.+|+.+.+..+.....|.. .+++.+|+.|.|.+|....+|.++..+++|++|++++|.+..+|..
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s-----------~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~ 132 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSS-----------CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLV 132 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchh-----------hhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchh
Confidence 44577788888877777777743 2348999999999999999999999999999999999999988876
Q ss_pred cCCCCCCcEEeecCC-ccccC-------------------CccccccccccEEeccccccccccCC--------------
Q 009315 247 LGDLPSLETLDVKRT-NIATL-------------------PKSIWKSSTLRHLYMSDIRFQLSAQK-------------- 292 (537)
Q Consensus 247 l~~l~~L~~L~L~~~-~l~~l-------------------p~~i~~l~~L~~L~l~~~~~~~~~~~-------------- 292 (537)
+..+..++.+..++| ++..+ +.++..++. .|++++|.+.. ..+
T Consensus 133 i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-~dls~~~~l~~l~c~rn 209 (1081)
T KOG0618|consen 133 IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-LDLSNLANLEVLHCERN 209 (1081)
T ss_pred HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh-hhhhhccchhhhhhhhc
Confidence 666655555555555 11111 112222222 24444443321 000
Q ss_pred ------------------------CccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEeccccc---------
Q 009315 293 ------------------------PFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQ--------- 339 (537)
Q Consensus 293 ------------------------~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------- 339 (537)
...-..-.+|+.++++.+... .+|.+++.+.+|+.+++..|++..-
T Consensus 210 ~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 210 QLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITS 288 (1081)
T ss_pred ccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhh
Confidence 000011234555555555443 4667788888888888877775410
Q ss_pred ----------HHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCC--------------C--------CCCCcceEEEe
Q 009315 340 ----------DQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNL--------------S--------KHKKLTELYLI 387 (537)
Q Consensus 340 ----------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l--------------~--------~~~~L~~l~l~ 387 (537)
.+.+|..+..+++|++|+|..+ .+....+..+... . .+..|+.|.+.
T Consensus 289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 0123334455778888998884 3332222111000 0 01223333333
Q ss_pred eec-C-CcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCc
Q 009315 388 GKL-P-RAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELK 465 (537)
Q Consensus 388 ~~~-~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 465 (537)
++. . ..+..+..+ .+|+.|+|++|++...+-..+.+++.|+.|+|++|+++.. +.+ +..++.|++|...+| .+.
T Consensus 368 nN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~t-va~~~~L~tL~ahsN-~l~ 443 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDT-VANLGRLHTLRAHSN-QLL 443 (1081)
T ss_pred cCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHH-HHhhhhhHHHhhcCC-cee
Confidence 321 1 111122333 8999999999998866667789999999999999999763 333 788999999998776 555
Q ss_pred eeEeCCCcccccccccccccccCC--CccccCCCCCCCEEEEecCc
Q 009315 466 RWSIEKETMPKLRELEIRRCQKLK--NPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 466 ~~~~~~~~~~~L~~L~l~~c~~l~--lp~~~~~l~~L~~L~l~~c~ 509 (537)
..| ....+|.|+.++++.|.... +|..... |+|+.|+++|..
T Consensus 444 ~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 666 67789999999999888766 6665544 899999999944
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=3.3e-18 Score=178.94 Aligned_cols=265 Identities=18% Similarity=0.149 Sum_probs=193.0
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecccc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 284 (537)
..-.+|+++++.+..+|+.+. .+|+.|++.+|+++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 346688999888888888775 4789999999999888863 57899999999999888853 467888999988
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCC
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDF 364 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 364 (537)
.+.. +|.. .++|+.|++.+|... .+|. ..++|+.|++++|++. .+|.. ..+|+.|.+++ |.+
T Consensus 273 ~L~~---Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~----~Lp~l---p~~L~~L~Ls~-N~L 334 (788)
T PRK15387 273 PLTH---LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA----SLPAL---PSELCKLWAYN-NQL 334 (788)
T ss_pred chhh---hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc----cCCCC---ccccccccccc-Ccc
Confidence 8766 4432 256777877777665 3443 2467899999988877 33431 23577888877 444
Q ss_pred CCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceee
Q 009315 365 LEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMT 444 (537)
Q Consensus 365 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 444 (537)
+.... + +.+|+.|+++++....+ ...|++|+.|++++|.+.. +|.. .++|+.|++++|.+.+. |.
T Consensus 335 ~~LP~-----l--p~~Lq~LdLS~N~Ls~L---P~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L-P~ 399 (788)
T PRK15387 335 TSLPT-----L--PSGLQELSVSDNQLASL---PTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL-PV 399 (788)
T ss_pred ccccc-----c--ccccceEecCCCccCCC---CCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCC-CC
Confidence 33211 1 25788888887643332 2346789999999999874 5533 35799999999998752 32
Q ss_pred ecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecCchHHHHHHHhhc
Q 009315 445 CQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDMEKSFEDEVKQSL 520 (537)
Q Consensus 445 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~ 520 (537)
..++|+.|++++|. +..+|. .+.+|+.|++++|....+|..+.++++|+.|++++ |.+.+..+..+
T Consensus 400 ----l~s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~--N~Ls~~~~~~L 465 (788)
T PRK15387 400 ----LPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG--NPLSERTLQAL 465 (788)
T ss_pred ----cccCCCEEEccCCc-CCCCCc---chhhhhhhhhccCcccccChHHhhccCCCeEECCC--CCCCchHHHHH
Confidence 24689999999984 555653 24578999999998777999999999999999999 56766666655
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=5.7e-19 Score=144.70 Aligned_cols=130 Identities=28% Similarity=0.368 Sum_probs=85.2
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccc--cCCccccccccccEEec
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIA--TLPKSIWKSSTLRHLYM 281 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l 281 (537)
+.+|++|++++|+++++|.+++.++.||.|++.-|.+..+|..|+.++.|++||+.+|++. .+|..+..|+.|+.|.+
T Consensus 55 l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 5666666666666666666666666666666666666666666666666666666666665 56666666666666666
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEeccc
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 337 (537)
++|.+.- +|..++++++||.|.+.+|... .+|.+++.++.|++|.+.+|+++
T Consensus 135 ~dndfe~---lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 135 GDNDFEI---LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cCCCccc---CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 6666544 5566666666666666665553 45666666666666666666655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=8.2e-17 Score=168.53 Aligned_cols=261 Identities=17% Similarity=0.102 Sum_probs=185.9
Q ss_pred eEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCC
Q 009315 174 HSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSL 253 (537)
Q Consensus 174 r~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L 253 (537)
..|.+.++....+|.. + .++|+.|++++|.++.+|.. .++|++|++++|.+..+|.. .++|
T Consensus 204 ~~LdLs~~~LtsLP~~-l------------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL 264 (788)
T PRK15387 204 AVLNVGESGLTTLPDC-L------------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGL 264 (788)
T ss_pred cEEEcCCCCCCcCCcc-h------------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---cccc
Confidence 3456666666667754 1 24688999999988888853 57899999999999888863 4688
Q ss_pred cEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEE
Q 009315 254 ETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTF 333 (537)
Q Consensus 254 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 333 (537)
+.|++++|.++.+|... ++|+.|++++|.+.. +|. ..++|+.|++.+|.... +|.. ..+|+.|++++
T Consensus 265 ~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~---LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 265 LELSIFSNPLTHLPALP---SGLCKLWIFGNQLTS---LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred ceeeccCCchhhhhhch---hhcCEEECcCCcccc---ccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 99999999888887633 568889999998776 443 24678999988887653 3331 34677888888
Q ss_pred ecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEeccc
Q 009315 334 HFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSH 413 (537)
Q Consensus 334 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 413 (537)
|.+. .+|.. ..+|+.|++++ |.++..+. + ..+|+.|.+.++....+ ...+.+|+.|++++|.
T Consensus 332 N~L~----~LP~l---p~~Lq~LdLS~-N~Ls~LP~-----l--p~~L~~L~Ls~N~L~~L---P~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 332 NQLT----SLPTL---PSGLQELSVSD-NQLASLPT-----L--PSELYKLWAYNNRLTSL---PALPSGLKELIVSGNR 393 (788)
T ss_pred Cccc----ccccc---ccccceEecCC-CccCCCCC-----C--CcccceehhhccccccC---cccccccceEEecCCc
Confidence 8876 44431 14789999988 55543221 1 24566676665422222 2235789999999999
Q ss_pred CCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCC-Ccc
Q 009315 414 LSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK-NPF 492 (537)
Q Consensus 414 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~-lp~ 492 (537)
+.. +|.. .++|+.|++++|.+.. .|.. +.+|+.|++++| .+..+|.....+++|+.|++++|+... .|.
T Consensus 394 Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l----~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 394 LTS-LPVL---PSELKELMVSGNRLTS-LPML----PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccC-CCCc---ccCCCEEEccCCcCCC-CCcc----hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 874 4432 3689999999999875 3322 457889999987 566788777889999999999999876 555
Q ss_pred cc
Q 009315 493 ES 494 (537)
Q Consensus 493 ~~ 494 (537)
.+
T Consensus 464 ~L 465 (788)
T PRK15387 464 AL 465 (788)
T ss_pred HH
Confidence 44
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-18 Score=142.72 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=143.8
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
+.+++.|-||+|.+..+|+.+..+.+|+.|++++|+|+.+|.+++.++.|+.|+++-|.+..+|.+++.++.|+.||+.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|.+.. ..+|..|-.|+-|+.|++.+|+.. .+|..++++++|+.|.+..|.+. .+|..++.++.|+.|.+.+ |.
T Consensus 112 nnl~e-~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll----~lpkeig~lt~lrelhiqg-nr 184 (264)
T KOG0617|consen 112 NNLNE-NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL----SLPKEIGDLTRLRELHIQG-NR 184 (264)
T ss_pred ccccc-ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh----hCcHHHHHHHHHHHHhccc-ce
Confidence 99887 568888889999999999998875 67889999999999999999887 7899999999999999998 54
Q ss_pred CC
Q 009315 364 FL 365 (537)
Q Consensus 364 ~~ 365 (537)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 43
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=8.1e-17 Score=169.59 Aligned_cols=244 Identities=17% Similarity=0.135 Sum_probs=151.0
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecccc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 284 (537)
.+..+|+++++.+..+|..+. ++|+.|++++|.+..+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 456788888888888887653 578888888888888887664 588888888888888887654 47888888888
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCC
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDF 364 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 364 (537)
.+.. +|..+. ++|+.|++..|... .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++ |.+
T Consensus 252 ~L~~---LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt----~LP~~lp--~sL~~L~Ls~-N~L 316 (754)
T PRK15370 252 RITE---LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR----TLPAHLP--SGITHLNVQS-NSL 316 (754)
T ss_pred ccCc---CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc----cCcccch--hhHHHHHhcC-Ccc
Confidence 7765 444332 35666666655444 3443332 35666666666655 2332221 2455566655 222
Q ss_pred CCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceee
Q 009315 365 LEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMT 444 (537)
Q Consensus 365 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 444 (537)
+.. |. .++++|+.|++++|.++. +|..+ .++|+.|++++|.+.. .|.
T Consensus 317 t~L-----------------------P~------~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~ 363 (754)
T PRK15370 317 TAL-----------------------PE------TLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPE 363 (754)
T ss_pred ccC-----------------------Cc------cccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CCh
Confidence 211 11 113567777777777663 44433 2577777777777653 222
Q ss_pred ecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCcccc----CCCCCCCEEEEecC
Q 009315 445 CQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFES----TNLTGLKELTLTDM 508 (537)
Q Consensus 445 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~----~~l~~L~~L~l~~c 508 (537)
. + .++|+.|++++| .+..+|.. ..++|+.|++++|....+|..+ ..++++..|++.+.
T Consensus 364 ~-l--p~~L~~LdLs~N-~Lt~LP~~--l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 364 T-L--PPTITTLDVSRN-ALTNLPEN--LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred h-h--cCCcCEEECCCC-cCCCCCHh--HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 1 2 357777777776 34444432 1246777888877765555543 33467777888773
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=3.9e-16 Score=164.50 Aligned_cols=256 Identities=16% Similarity=0.124 Sum_probs=158.6
Q ss_pred eeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCC
Q 009315 173 LHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPS 252 (537)
Q Consensus 173 Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~ 252 (537)
...|.+.+.....+|.. + .+.|+.|++++|.+..+|..+. .+|++|++++|.+..+|..+. .+
T Consensus 180 ~~~L~L~~~~LtsLP~~-I------------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~ 242 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-I------------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DT 242 (754)
T ss_pred ceEEEeCCCCcCcCCcc-c------------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--cc
Confidence 34455555555555542 1 2457788888887777776654 478888888888877776553 46
Q ss_pred CcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEE
Q 009315 253 LETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLT 332 (537)
Q Consensus 253 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~ 332 (537)
|+.|++++|++..+|..+. .+|+.|++++|.+.. +|..+. ++|+.|++.+|... .+|..+. ++|+.|+++
T Consensus 243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~---LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 243 IQEMELSINRITELPERLP--SALQSLDLFHNKISC---LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred ccEEECcCCccCcCChhHh--CCCCEEECcCCccCc---cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 8888888888877777654 478888888877765 444443 46778877777654 3443332 467777888
Q ss_pred EecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecc
Q 009315 333 FHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLS 412 (537)
Q Consensus 333 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 412 (537)
+|.+. .+|..+ .++|+.|++++| .++.... .+ +++|+.|+++++.-..+. ..+|++|+.|++++|
T Consensus 313 ~N~Lt----~LP~~l--~~sL~~L~Ls~N-~Lt~LP~----~l--~~sL~~L~Ls~N~L~~LP--~~lp~~L~~LdLs~N 377 (754)
T PRK15370 313 SNSLT----ALPETL--PPGLKTLEAGEN-ALTSLPA----SL--PPELQVLDVSKNQITVLP--ETLPPTITTLDVSRN 377 (754)
T ss_pred CCccc----cCCccc--cccceeccccCC-ccccCCh----hh--cCcccEEECCCCCCCcCC--hhhcCCcCEEECCCC
Confidence 77776 344333 257788888773 3332211 11 256777777654211111 123467888888888
Q ss_pred cCCCCchhhhhcCCCccEEEeccccccCceeee---cCCCCccccEEEeccCCCCceeEeCCCcccccccc
Q 009315 413 HLSKDPMPVLGQLKELKILRLFAHSYIGEQMTC---QKGWFPQLLVLKLWVLKELKRWSIEKETMPKLREL 480 (537)
Q Consensus 413 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 480 (537)
.+.. +|..+. +.|+.|++++|.+... |.. ....++++..|++.+|+.. ...+++|+.|
T Consensus 378 ~Lt~-LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls------~~tl~~L~~L 438 (754)
T PRK15370 378 ALTN-LPENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFS------ERTIQNMQRL 438 (754)
T ss_pred cCCC-CCHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCcc------HHHHHHHHHh
Confidence 8773 454443 3688888888887642 221 1344577788888877432 3456666666
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=2.8e-17 Score=152.09 Aligned_cols=125 Identities=21% Similarity=0.207 Sum_probs=101.9
Q ss_pred EEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCC-CCCCccCcc-cCCCC
Q 009315 175 SYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRW-TFLDSIPKS-LGDLP 251 (537)
Q Consensus 175 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~-~~i~~lp~~-l~~l~ 251 (537)
.+.+..|....+|++.|+. +++||.||||+|.+..| |++|..++.|..|-+.+ |+|.++|+. |++|.
T Consensus 71 eirLdqN~I~~iP~~aF~~----------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKT----------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred EEEeccCCcccCChhhccc----------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 3567777888899887776 68999999999988888 88899999888877766 789999865 78899
Q ss_pred CCcEEeecCCccccCC-ccccccccccEEeccccccccccCCCccCCccccccccceEEec
Q 009315 252 SLETLDVKRTNIATLP-KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIG 311 (537)
Q Consensus 252 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~ 311 (537)
.|+.|.+..|++..++ ..+..|++|..|.+.+|.+.. .....+..+.+++++.+..+.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHhhhcCc
Confidence 9999999999888544 467889999999999988876 444578888888888876665
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.56 E-value=1.2e-14 Score=155.65 Aligned_cols=312 Identities=21% Similarity=0.182 Sum_probs=203.2
Q ss_pred CCCCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCC--CCCCch-hhccccccceeecCCC-CC
Q 009315 165 ASGKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVY--KPVLPE-TIGKLRLLRHVGLRWT-FL 240 (537)
Q Consensus 165 ~~~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~lp~-~~~~l~~L~~L~l~~~-~i 240 (537)
+........|...+.++....++.. ..++.|++|-+.++. +..++. .|..++.|++||+++| .+
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~~------------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAGS------------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred ccccchhheeEEEEeccchhhccCC------------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 3345566777777666654444332 346789999999775 566654 5788999999999987 77
Q ss_pred CccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCC--CCchH
Q 009315 241 DSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKK--SRPLN 318 (537)
Q Consensus 241 ~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~--~~~~~ 318 (537)
..+|+++++|.+|++|+++++.++.+|.++++|.+|.+|++..+.... .++.....|++|++|.+...... .....
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~ 662 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRSALSNDKLLLK 662 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc--cccchhhhcccccEEEeeccccccchhhHH
Confidence 999999999999999999999999999999999999999999987766 45677777999999998776522 23445
Q ss_pred HhhcCccCcEEeEEEecccccHHHHHHHhccCCCcc----eEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCC--
Q 009315 319 WLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLE----SLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPR-- 392 (537)
Q Consensus 319 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-- 392 (537)
++.++.+|+.+.++.... .+...+..++.|. .+.+.++.. ......+..+.+|+.|.+.++...
T Consensus 663 el~~Le~L~~ls~~~~s~-----~~~e~l~~~~~L~~~~~~l~~~~~~~-----~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSV-----LLLEDLLGMTRLRSLLQSLSIEGCSK-----RTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hhhcccchhhheeecchh-----HhHhhhhhhHHHHHHhHhhhhccccc-----ceeecccccccCcceEEEEcCCCchh
Confidence 666777777777754433 1111223333333 223222111 112344556788888888664221
Q ss_pred cCCcc-----cc-CCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeee---------cCCCCccccEE-
Q 009315 393 AIDIN-----DQ-LPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTC---------QKGWFPQLLVL- 456 (537)
Q Consensus 393 ~~~~~-----~~-~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---------~~~~~~~L~~L- 456 (537)
.+.+. .. | +++..+.+.+|... ..+.+..-.|+|+.|.+..|....++++. ....|.+++.+
T Consensus 733 ~~~~~~~~~~~~~f-~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~ 810 (889)
T KOG4658|consen 733 VIEWEESLIVLLCF-PNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR 810 (889)
T ss_pred hcccccccchhhhH-HHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce
Confidence 11110 00 2 34555555555543 24555667799999999988776654432 02234555555
Q ss_pred EeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecC
Q 009315 457 KLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDM 508 (537)
Q Consensus 457 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c 508 (537)
.+.+...+..+....-.++.|+.+.+..||++. .+|.+.++.+.+|
T Consensus 811 ~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~------~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 811 MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLG------KLPLLSTLTIVGC 856 (889)
T ss_pred eeecCCCCceeEecccCccchhheehhcCcccc------cCccccccceecc
Confidence 355555555555555566778888888888766 2345556666665
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=6.3e-17 Score=149.75 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=99.9
Q ss_pred ceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecC-CccccCCcc-ccccccccEEe
Q 009315 205 RLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKR-TNIATLPKS-IWKSSTLRHLY 280 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~ 280 (537)
+.-..++|..|.++.+| .+|+.+++||.|+|++|.|+.| |+.|.++..|..|-+.+ |+|+.+|.+ +++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 35678899999999996 5789999999999999999877 77888998888887776 789988874 67888888888
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEec
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHF 335 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 335 (537)
+.-|.+.- .....+..+++|..|.+.++.........+..+..++.+.+..|.
T Consensus 147 lNan~i~C--ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINC--IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcc--hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 88887766 566777888888888887776653333356666666666655444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=1.2e-15 Score=149.11 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=45.0
Q ss_pred CceeeEEEcCCCCCC-----CCchhhccccccceeecCCCCCCc-------cCcccCCCCCCcEEeecCCccc-cCCccc
Q 009315 204 YRLLRVLDLERVYKP-----VLPETIGKLRLLRHVGLRWTFLDS-------IPKSLGDLPSLETLDVKRTNIA-TLPKSI 270 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~-----~lp~~~~~l~~L~~L~l~~~~i~~-------lp~~l~~l~~L~~L~L~~~~l~-~lp~~i 270 (537)
+..|++|+++++.+. .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 455777777766552 234455556666777766665442 2233445566666666666554 233333
Q ss_pred ccccc---ccEEeccccccc
Q 009315 271 WKSST---LRHLYMSDIRFQ 287 (537)
Q Consensus 271 ~~l~~---L~~L~l~~~~~~ 287 (537)
..+.+ |++|++++|.+.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHhccCcccEEEeeCCccc
Confidence 33333 666666655443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=9e-16 Score=150.04 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=51.6
Q ss_pred EEEcCCCCC--CCCchhhccccccceeecCCCCC-----CccCcccCCCCCCcEEeecCCcccc-------CCccccccc
Q 009315 209 VLDLERVYK--PVLPETIGKLRLLRHVGLRWTFL-----DSIPKSLGDLPSLETLDVKRTNIAT-------LPKSIWKSS 274 (537)
Q Consensus 209 ~L~L~~~~~--~~lp~~~~~l~~L~~L~l~~~~i-----~~lp~~l~~l~~L~~L~L~~~~l~~-------lp~~i~~l~ 274 (537)
.|+|.++.+ ...+..+..+.+|+.|+++++.+ ..++..+...++|+.|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 355665544 33455566777788888888876 2355556677778888888775542 233455667
Q ss_pred cccEEecccccccc
Q 009315 275 TLRHLYMSDIRFQL 288 (537)
Q Consensus 275 ~L~~L~l~~~~~~~ 288 (537)
+|++|++++|.+..
T Consensus 82 ~L~~L~l~~~~~~~ 95 (319)
T cd00116 82 GLQELDLSDNALGP 95 (319)
T ss_pred ceeEEEccCCCCCh
Confidence 77777777776653
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=2.2e-12 Score=125.47 Aligned_cols=151 Identities=27% Similarity=0.267 Sum_probs=132.9
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
|-.|..+.|+.|.+..+|.+++++..|.||+|+.|++..+|..++.|+ |++|.+++|+++.+|..++.+..|.+||.+.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh
Confidence 456888899999999999999999999999999999999999888765 8999999999999999999999999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|.+.. +|..++.+.+|+.|.+..|... .+|.++..+ .|..|++++|++. .+|-.+.++++|+.|.|.+ |-
T Consensus 176 nei~s---lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis----~iPv~fr~m~~Lq~l~Len-NP 245 (722)
T KOG0532|consen 176 NEIQS---LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS----YLPVDFRKMRHLQVLQLEN-NP 245 (722)
T ss_pred hhhhh---chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee----ecchhhhhhhhheeeeecc-CC
Confidence 98877 7888999999999998887765 567778755 5889999999998 7899999999999999987 54
Q ss_pred CC
Q 009315 364 FL 365 (537)
Q Consensus 364 ~~ 365 (537)
+.
T Consensus 246 Lq 247 (722)
T KOG0532|consen 246 LQ 247 (722)
T ss_pred CC
Confidence 43
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.6e-11 Score=104.51 Aligned_cols=131 Identities=22% Similarity=0.215 Sum_probs=48.5
Q ss_pred CCceeeEEEcCCCCCCCCchhhc-cccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCcccc-ccccccEEe
Q 009315 203 GYRLLRVLDLERVYKPVLPETIG-KLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIW-KSSTLRHLY 280 (537)
Q Consensus 203 ~~~~L~~L~L~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~ 280 (537)
+...+|.|+|+++.+..+. .++ .+.+|+.|++++|.|..++ .+..+++|++|++++|.++.++..+. .+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3567899999999888874 455 5788999999999998886 48889999999999999998876664 689999999
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+++|++.. ..--. .+..+++|+.|++.+|.+......-...+..+|+|+.||-..
T Consensus 95 L~~N~I~~-l~~l~------------------------~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISD-LNELE------------------------PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---S-CCCCG------------------------GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCC-hHHhH------------------------HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99988765 11111 234455666666666665533223344456667777776543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.3e-12 Score=124.23 Aligned_cols=195 Identities=21% Similarity=0.209 Sum_probs=151.1
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
+..-...|++.|.+..+|..+..+..|..+.+..|.+..+|..++++..|.+||++.|+++.+|..++.|+ |+.|-+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 45567789999999999999999999999999999999999999999999999999999999999998765 89999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|++.. +|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|.+||+++ |.
T Consensus 153 Nkl~~---lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~----~lp~El~~L-pLi~lDfSc-Nk 222 (722)
T KOG0532|consen 153 NKLTS---LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE----DLPEELCSL-PLIRLDFSC-NK 222 (722)
T ss_pred Ccccc---CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh----hCCHHHhCC-ceeeeeccc-Cc
Confidence 98877 7888888888888888877765 56777888888888888888776 677777744 477788876 43
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhh---cCCCccEEEecccc
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLG---QLKELKILRLFAHS 437 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~l~~L~~L~L~~~~ 437 (537)
+. .+|..+.. + +.|++|-|.+|.+. .+|..+. ...--++|+...|.
T Consensus 223 is-----------------------~iPv~fr~---m-~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-----------------------YLPVDFRK---M-RHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-----------------------ecchhhhh---h-hhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 32 12222222 2 67888888888875 4554443 33334666666663
No 28
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.04 E-value=6.3e-11 Score=113.83 Aligned_cols=67 Identities=27% Similarity=0.569 Sum_probs=57.1
Q ss_pred ChhhHHHHHhhcCh---------hhhhhHHHHhcCCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhccccccc
Q 009315 8 ALDDQSTTLDQLSF---------RDISSIWVFANKSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIE 74 (537)
Q Consensus 8 ~~~~W~~~l~~~~~---------~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~ 74 (537)
+.++|+++++++.+ ..+..++.+||+.||+++|+||+|||+||+++.|+++.||++|+|+|||...+
T Consensus 211 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 211 TVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp SSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 67899999987543 34999999999999999999999999999999999999999999999997653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.5e-11 Score=112.92 Aligned_cols=229 Identities=20% Similarity=0.175 Sum_probs=148.4
Q ss_pred ccccccceeecCCCCCCccCc--ccCCCCCCcEEeecCCccc---cCCccccccccccEEeccccccccccCCCccCCcc
Q 009315 225 GKLRLLRHVGLRWTFLDSIPK--SLGDLPSLETLDVKRTNIA---TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSL 299 (537)
Q Consensus 225 ~~l~~L~~L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 299 (537)
.+++.||...|+++.++..+. ....|++++.|||+.|-+. .+-.-...|++|+.|+++.|++.. +.. .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~---~~~---s- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN---FIS---S- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC---Ccc---c-
Confidence 467888888998888776663 4667888999999888544 333445678888888888887654 110 0
Q ss_pred ccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCC
Q 009315 300 TKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHK 379 (537)
Q Consensus 300 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~ 379 (537)
.. -..+++|+.|.++.|.++.. .+...+..+++|+.|.+..|+......
T Consensus 191 ---------------~~---~~~l~~lK~L~l~~CGls~k--~V~~~~~~fPsl~~L~L~~N~~~~~~~----------- 239 (505)
T KOG3207|consen 191 ---------------NT---TLLLSHLKQLVLNSCGLSWK--DVQWILLTFPSLEVLYLEANEIILIKA----------- 239 (505)
T ss_pred ---------------cc---hhhhhhhheEEeccCCCCHH--HHHHHHHhCCcHHHhhhhcccccceec-----------
Confidence 00 11456777888888887754 666667788899999998853221000
Q ss_pred CcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCC-chhhhhcCCCccEEEeccccccCceeee-----cCCCCccc
Q 009315 380 KLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKD-PMPVLGQLKELKILRLFAHSYIGEQMTC-----QKGWFPQL 453 (537)
Q Consensus 380 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~~~L 453 (537)
.+ ...+..|+.|+|++|.+... .....+.+|.|+.|+++.|.+....... ....|++|
T Consensus 240 ----------~~------~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 240 ----------TS------TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred ----------ch------hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 00 11136788888888887642 2356788888988888888876533222 13678999
Q ss_pred cEEEeccCCCCceeEe--CCCcccccccccccccccCC-----CccccCCCCCCCEEEEecC
Q 009315 454 LVLKLWVLKELKRWSI--EKETMPKLRELEIRRCQKLK-----NPFESTNLTGLKELTLTDM 508 (537)
Q Consensus 454 ~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~~l~-----lp~~~~~l~~L~~L~l~~c 508 (537)
++|.+..|+ +..|+. ....+++|+.|.+..++... --.-|..+++|..|.=.+|
T Consensus 304 ~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di 364 (505)
T KOG3207|consen 304 EYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDI 364 (505)
T ss_pred eeeecccCc-cccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhccccc
Confidence 999998874 344442 23456788888887776654 1112445555555544444
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=2.7e-10 Score=114.63 Aligned_cols=104 Identities=28% Similarity=0.332 Sum_probs=69.7
Q ss_pred CceeeEEEcCCCCCCCCchhhcccc-ccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLR-LLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
++.++.|++.++.+..+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|++..+|...+.++.|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 4567777777777777777666664 777777777777777666777777777777777777777666677777777777
Q ss_pred ccccccccCCCccCCccccccccceEEe
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLI 310 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~ 310 (537)
+|.+.. +|..++....|+++.+..+
T Consensus 195 ~N~i~~---l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 195 GNKISD---LPPEIELLSALEELDLSNN 219 (394)
T ss_pred CCcccc---CchhhhhhhhhhhhhhcCC
Confidence 776665 4444434444555544444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=7.7e-11 Score=101.65 Aligned_cols=139 Identities=22% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCCCCchhhccccccceeecCCCCCCccCcccC-CCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCc
Q 009315 216 YKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLG-DLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPF 294 (537)
Q Consensus 216 ~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 294 (537)
.+...|. +.+..++|.|+|++|.|..+. .++ .+.+|+.|++++|.++.++ ++..+++|+.|++++|.+.. +..
T Consensus 8 ~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~---i~~ 81 (175)
T PF14580_consen 8 MIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS---ISE 81 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S----CH
T ss_pred ccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc---ccc
Confidence 3444433 345567888999998888774 465 5788899999999888775 67788888888888887765 111
Q ss_pred cCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCC
Q 009315 295 VNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGN 374 (537)
Q Consensus 295 ~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 374 (537)
.+ ...+++|+.|++++|++..- .-...+..+++|+.|++.+|. +..........
T Consensus 82 ~l-----------------------~~~lp~L~~L~L~~N~I~~l--~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~v 135 (175)
T PF14580_consen 82 GL-----------------------DKNLPNLQELYLSNNKISDL--NELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFV 135 (175)
T ss_dssp HH-----------------------HHH-TT--EEE-TTS---SC--CCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHH
T ss_pred ch-----------------------HHhCCcCCEEECcCCcCCCh--HHhHHHHcCCCcceeeccCCc-ccchhhHHHHH
Confidence 11 12456666677766665432 112346788999999999843 33222222222
Q ss_pred CCCCCCcceEEE
Q 009315 375 LSKHKKLTELYL 386 (537)
Q Consensus 375 l~~~~~L~~l~l 386 (537)
+..+|+|+.|+-
T Consensus 136 i~~lP~Lk~LD~ 147 (175)
T PF14580_consen 136 IYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT-SEETT
T ss_pred HHHcChhheeCC
Confidence 334677887764
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.5e-11 Score=112.95 Aligned_cols=215 Identities=18% Similarity=0.149 Sum_probs=139.8
Q ss_pred cCCceeeEEEcCCCCCCCCc--hhhccccccceeecCCCCCCcc---CcccCCCCCCcEEeecCCccccCCc--cccccc
Q 009315 202 RGYRLLRVLDLERVYKPVLP--ETIGKLRLLRHVGLRWTFLDSI---PKSLGDLPSLETLDVKRTNIATLPK--SIWKSS 274 (537)
Q Consensus 202 ~~~~~L~~L~L~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~~l~~lp~--~i~~l~ 274 (537)
+++++||...|.++.+...+ .....|+++|.|+|++|-+..+ -.....|++|+.|+++.|.+....+ .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45889999999999888776 3678899999999999876433 2335689999999999998773322 223678
Q ss_pred cccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcc
Q 009315 275 TLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLE 354 (537)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 354 (537)
.|+.|.++.|.++. ..+......+++|+.|++..|............+..|+.|++++|++-.. ......+.++.|+
T Consensus 198 ~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~--~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF--DQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc--ccccccccccchh
Confidence 89999999998876 23334455678888888877742211122233456677778877776532 2223456677777
Q ss_pred eEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCC-chhhhhcCCCccEEEe
Q 009315 355 SLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKD-PMPVLGQLKELKILRL 433 (537)
Q Consensus 355 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L 433 (537)
.|.++.|...+... +....+ +....+ ++|++|++..|++.+. ....+..+++|+.|.+
T Consensus 275 ~Lnls~tgi~si~~----------~d~~s~----------~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 275 QLNLSSTGIASIAE----------PDVESL----------DKTHTF-PKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hhhccccCcchhcC----------CCccch----------hhhccc-ccceeeecccCccccccccchhhccchhhhhhc
Confidence 77776632211000 000111 111223 7889999998887532 3345566778888887
Q ss_pred ccccccC
Q 009315 434 FAHSYIG 440 (537)
Q Consensus 434 ~~~~~~~ 440 (537)
..|.+..
T Consensus 334 ~~n~ln~ 340 (505)
T KOG3207|consen 334 TLNYLNK 340 (505)
T ss_pred ccccccc
Confidence 7776654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=3.2e-10 Score=114.16 Aligned_cols=196 Identities=22% Similarity=0.175 Sum_probs=107.4
Q ss_pred EEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCC-CCcEEeecCCccccCCccccccccccEEeccccccc
Q 009315 209 VLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLP-SLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQ 287 (537)
Q Consensus 209 ~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 287 (537)
.++++.+.+...+..+..++.++.|++.++.+..+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4555555554444445555666666666666666666555553 666666666666666666666666666666666665
Q ss_pred cccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCC
Q 009315 288 LSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEP 367 (537)
Q Consensus 288 ~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 367 (537)
. ++...+..++|+.|++.++... .+|..+..+..|+++.++.|... ..+..+.++.++..+.+.. +.....
T Consensus 177 ~---l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~----~~~~~~~~~~~l~~l~l~~-n~~~~~ 247 (394)
T COG4886 177 D---LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII----ELLSSLSNLKNLSGLELSN-NKLEDL 247 (394)
T ss_pred h---hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce----ecchhhhhcccccccccCC-ceeeec
Confidence 5 4444446666666666666554 34444445555666666666432 3344455555565555444 222211
Q ss_pred CccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCc
Q 009315 368 SDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDP 418 (537)
Q Consensus 368 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 418 (537)
...+..+.+++.++++++....+..+..+ .+++.|+++++.+...+
T Consensus 248 ----~~~~~~l~~l~~L~~s~n~i~~i~~~~~~-~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 248 ----PESIGNLSNLETLDLSNNQISSISSLGSL-TNLRELDLSGNSLSNAL 293 (394)
T ss_pred ----cchhccccccceecccccccccccccccc-CccCEEeccCccccccc
Confidence 12223344455555555433333333333 56666666666655433
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=5.3e-11 Score=111.87 Aligned_cols=298 Identities=18% Similarity=0.147 Sum_probs=170.5
Q ss_pred ccceeecCCCC-C--CccCcccCCCCCCcEEeecCC-ccc--cCCccccccccccEEeccccccccccCCCccCCccccc
Q 009315 229 LLRHVGLRWTF-L--DSIPKSLGDLPSLETLDVKRT-NIA--TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKL 302 (537)
Q Consensus 229 ~L~~L~l~~~~-i--~~lp~~l~~l~~L~~L~L~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 302 (537)
.||.|.++++. . ..+-....++++++.|.+.+| +++ .+-.--..+++|++|++..|....+..+......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666666652 2 222222345666666666666 333 11112235666777777665433322233334456666
Q ss_pred cccceEEecCCC--CchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCC
Q 009315 303 QTLWGLLIGKKS--RPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKK 380 (537)
Q Consensus 303 ~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 380 (537)
++|+++.+.... .+..-.+.++.++.+...+|.-. .++.+...-+.+..+.++++..|+.++...-. .....+..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--~i~~~c~~ 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-ELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--LIACGCHA 295 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-cHHHHHHHhccChHhhccchhhhccccchHHH--HHhhhhhH
Confidence 666666554321 12223445555666655554322 12233333344445566666666555543311 11122455
Q ss_pred cceEEEeeec--CC-cCCccccCCCCeeEEEEeccc-CCCCchhhh-hcCCCccEEEeccccccCce-eeecCCCCcccc
Q 009315 381 LTELYLIGKL--PR-AIDINDQLPEKLTVFTLSLSH-LSKDPMPVL-GQLKELKILRLFAHSYIGEQ-MTCQKGWFPQLL 454 (537)
Q Consensus 381 L~~l~l~~~~--~~-~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~ 454 (537)
|+.+..+++- +. .+..+..-..+|+.|.++.|+ ++..-...+ .+++.|+.+++..+....+. ...--..++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 5555554431 11 111122224788888888886 333223333 35788888888887654332 222245789999
Q ss_pred EEEeccCCCCcee-----EeCCCcccccccccccccccCC--CccccCCCCCCCEEEEecCchHHHHHHHhhccCccceE
Q 009315 455 VLKLWVLKELKRW-----SIEKETMPKLRELEIRRCQKLK--NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVV 527 (537)
Q Consensus 455 ~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~--lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~ 527 (537)
.|.+++|.....- .....++..|+.+.+.+||.+. .-+.+..+++|+.+++.+|.+-..+.+...-..+|+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 9999988765543 2223467789999999999988 66678889999999999999877788877777788777
Q ss_pred Ec
Q 009315 528 II 529 (537)
Q Consensus 528 ~l 529 (537)
..
T Consensus 456 v~ 457 (483)
T KOG4341|consen 456 VH 457 (483)
T ss_pred eh
Confidence 54
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3e-11 Score=108.47 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=59.9
Q ss_pred cccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcc
Q 009315 275 TLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLE 354 (537)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 354 (537)
.|++||+++..++. ..+...++.+.+|+.|++.++.....+...+.+-.+|+.|+++.++.-.. .++.-.+.+|+.|.
T Consensus 186 Rlq~lDLS~s~it~-stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeH-HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-hHHHHHHHhhhhHh
Confidence 46666666665554 22334456667777777777777667777788888888888887663221 14444577888889
Q ss_pred eEEEEeeCCCCC
Q 009315 355 SLMLRSVNDFLE 366 (537)
Q Consensus 355 ~L~l~~~~~~~~ 366 (537)
.|+|+||..++.
T Consensus 264 ~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 264 ELNLSWCFLFTE 275 (419)
T ss_pred hcCchHhhccch
Confidence 999988766543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.1e-10 Score=100.28 Aligned_cols=133 Identities=19% Similarity=0.161 Sum_probs=78.4
Q ss_pred cCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCC
Q 009315 322 NSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLP 401 (537)
Q Consensus 322 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 401 (537)
.-+.|+++++++|.++ .+-++..-.+.++.|+++. |.+.. .+++..+
T Consensus 282 TWq~LtelDLS~N~I~----~iDESvKL~Pkir~L~lS~-N~i~~-----v~nLa~L----------------------- 328 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT----QIDESVKLAPKLRRLILSQ-NRIRT-----VQNLAEL----------------------- 328 (490)
T ss_pred hHhhhhhccccccchh----hhhhhhhhccceeEEeccc-cceee-----ehhhhhc-----------------------
Confidence 3456778888888877 5666677778888888887 33321 1122222
Q ss_pred CCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCcee--EeCCCccccccc
Q 009315 402 EKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRW--SIEKETMPKLRE 479 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~ 479 (537)
++|+.|||++|.++ ....+-..+-+++.|.|++|.+... . .++.+-+|..|++.+| +++.+ ....|++|.|+.
T Consensus 329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--S-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--S-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLET 403 (490)
T ss_pred ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--h-hhHhhhhheecccccc-chhhHHHhcccccccHHHH
Confidence 56666666666655 2333445566666666666665431 1 1455566666666665 33322 234567777777
Q ss_pred ccccccccCCCcc
Q 009315 480 LEIRRCQKLKNPF 492 (537)
Q Consensus 480 L~l~~c~~l~lp~ 492 (537)
+.+.+||...+|.
T Consensus 404 l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 404 LRLTGNPLAGSVD 416 (490)
T ss_pred HhhcCCCccccch
Confidence 7777777655443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=5.2e-10 Score=103.01 Aligned_cols=247 Identities=19% Similarity=0.130 Sum_probs=119.7
Q ss_pred CceeeEEEcCCCCCCC-----CchhhccccccceeecCCCCC----CccCcc-------cCCCCCCcEEeecCCccc-cC
Q 009315 204 YRLLRVLDLERVYKPV-----LPETIGKLRLLRHVGLRWTFL----DSIPKS-------LGDLPSLETLDVKRTNIA-TL 266 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i----~~lp~~-------l~~l~~L~~L~L~~~~l~-~l 266 (537)
+..+..++||||.++. +-+.+.+.+.||..+++.-.. ..+|+. +-.+++|++||||+|.+. .-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 5667777777765543 334455666777777765321 234433 345567777777777554 22
Q ss_pred C----ccccccccccEEeccccccccccCCCccCCcc-ccccccceEEecCCCCchHHhhcCccCcEEeEEEeccccc-H
Q 009315 267 P----KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSL-TKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQ-D 340 (537)
Q Consensus 267 p----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~ 340 (537)
+ .-+.++..|++|.+.+|.+.. .+=+.+ ..|..|. .......-+.|+.+.+..|+.... .
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~-----~ag~~l~~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGP-----EAGGRLGRALFELA---------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCCh-----hHHHHHHHHHHHHH---------HHhccCCCcceEEEEeeccccccccH
Confidence 2 234556777777777765443 111111 1122221 011233445666666666664421 1
Q ss_pred HHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCC---
Q 009315 341 QEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKD--- 417 (537)
Q Consensus 341 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--- 417 (537)
..+...+...+.|+.+.+..+...+.........+.. +++|+.|+|.+|.++..
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-----------------------~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-----------------------CPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHh-----------------------CCcceeeecccchhhhHHHH
Confidence 2344455566667777766632221111111111111 25555555555555432
Q ss_pred -chhhhhcCCCccEEEeccccccCceeee----cCCCCccccEEEeccCCCCce----eEeCCCccccccccccccccc
Q 009315 418 -PMPVLGQLKELKILRLFAHSYIGEQMTC----QKGWFPQLLVLKLWVLKELKR----WSIEKETMPKLRELEIRRCQK 487 (537)
Q Consensus 418 -~~~~l~~l~~L~~L~L~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~c~~ 487 (537)
.-..+..+|+|+.|++++|.+....... -....|+|+.|.+.+|..... +.......|.|+.|++++|..
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2233444555666666655554322111 113356666666666533221 111122356677777777765
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=2.6e-10 Score=102.64 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=45.2
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecccc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 284 (537)
+.|+.+|||+|.+..+..++.-++.+|.|++++|.|..+.. +..|++|+.|||++|.++++-..=.++-+.+.|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 44555666666555555555555566666666665555433 55555666666666555544433344555555555555
Q ss_pred ccc
Q 009315 285 RFQ 287 (537)
Q Consensus 285 ~~~ 287 (537)
.+.
T Consensus 363 ~iE 365 (490)
T KOG1259|consen 363 KIE 365 (490)
T ss_pred hHh
Confidence 443
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.82 E-value=4.9e-10 Score=103.19 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=73.6
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCC----CCCCchh-------hccccccceeecC
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVY----KPVLPET-------IGKLRLLRHVGLR 236 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~----~~~lp~~-------~~~l~~L~~L~l~ 236 (537)
..+..+..+.+.++..|.-..+++...+.. -+.||..+++.-. ...+|+. +..+++|++|+||
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~------~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLAS------KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhh------cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 344556667777777666666666665433 5688999988543 3345543 4456789999999
Q ss_pred CCCCC--ccC---cccCCCCCCcEEeecCCccccCCc--------------cccccccccEEecccccccc
Q 009315 237 WTFLD--SIP---KSLGDLPSLETLDVKRTNIATLPK--------------SIWKSSTLRHLYMSDIRFQL 288 (537)
Q Consensus 237 ~~~i~--~lp---~~l~~l~~L~~L~L~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~ 288 (537)
.|-++ .++ +-+..++.|+.|.|.+|.+..... -+.+-++|+++..++|++..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 98763 222 235678999999999998763221 12344566666666665543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.63 E-value=5.5e-08 Score=102.71 Aligned_cols=82 Identities=29% Similarity=0.447 Sum_probs=40.6
Q ss_pred eeEEEcCCCCCC-CCchhhccccccceeecCCCCC-CccCcccCCCCCCcEEeecCCccc-cCCccccccccccEEeccc
Q 009315 207 LRVLDLERVYKP-VLPETIGKLRLLRHVGLRWTFL-DSIPKSLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 207 L~~L~L~~~~~~-~lp~~~~~l~~L~~L~l~~~~i-~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~ 283 (537)
++.|+|+++.+. .+|..++++++|+.|+|++|.+ +.+|..++.+++|++|+|++|++. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555544332 3444555555555555555544 244544555555555555555544 4454555555555555555
Q ss_pred ccccc
Q 009315 284 IRFQL 288 (537)
Q Consensus 284 ~~~~~ 288 (537)
|.+.+
T Consensus 500 N~l~g 504 (623)
T PLN03150 500 NSLSG 504 (623)
T ss_pred Ccccc
Confidence 54444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=3.7e-08 Score=69.69 Aligned_cols=57 Identities=33% Similarity=0.503 Sum_probs=29.9
Q ss_pred ccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCCc-cccccccccEEeccccc
Q 009315 229 LLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIR 285 (537)
Q Consensus 229 ~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 285 (537)
+|++|++++|.+..+|. .+.++++|++|++++|.++.+|+ .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555542 34555555555555555554443 34555555555555553
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=5.1e-08 Score=68.98 Aligned_cols=59 Identities=31% Similarity=0.458 Sum_probs=52.3
Q ss_pred ceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCcc
Q 009315 205 RLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNI 263 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l 263 (537)
++|++|++++|.+..+| ..|..+++|++|++++|.+..+|. .+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999999997 578899999999999999988864 689999999999999875
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=9.6e-08 Score=100.90 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=85.3
Q ss_pred CCcEEeecCCccc-cCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEe
Q 009315 252 SLETLDVKRTNIA-TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLG 330 (537)
Q Consensus 252 ~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~ 330 (537)
.++.|+|++|.+. .+|..++++++|+.|++++|.+.+ .+|..++.+++|+.|++..|...+.+|..++++++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 3678888888887 778888888888888888888876 6777788888888888888888878888889999999999
Q ss_pred EEEecccccHHHHHHHhccC-CCcceEEEEeeC
Q 009315 331 LTFHFESLQDQEITKWIKDL-EHLESLMLRSVN 362 (537)
Q Consensus 331 l~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 362 (537)
+++|.+.+ .+|..+... .++..+++.+|.
T Consensus 497 Ls~N~l~g---~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSG---RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccc---cCChHHhhccccCceEEecCCc
Confidence 99988877 677776653 466778887744
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=9.4e-09 Score=103.70 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=40.0
Q ss_pred eeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccc
Q 009315 206 LLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIR 285 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 285 (537)
.++.+.+..+.+..+-..+..+++|.+|++.+|.|..+...+..+++|++|++++|.|+.+. ++..++.|+.|++.+|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 34444444444444333344555555555555555544433444555555555555555442 34444445555555554
Q ss_pred ccc
Q 009315 286 FQL 288 (537)
Q Consensus 286 ~~~ 288 (537)
+..
T Consensus 152 i~~ 154 (414)
T KOG0531|consen 152 ISD 154 (414)
T ss_pred chh
Confidence 443
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.3e-08 Score=102.67 Aligned_cols=264 Identities=24% Similarity=0.155 Sum_probs=172.2
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecccc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 284 (537)
+.++.++...+...........+..++.+.++.|.+..+-..++.+.+|+.|++.+|.+..+...+..+++|++|++++|
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred chhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc
Confidence 34455555544333221111567778888899998887555588899999999999999988766899999999999999
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHH-hccCCCcceEEEEeeCC
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKW-IKDLEHLESLMLRSVND 363 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 363 (537)
.+.. ...+..++.|+.|++.+|.+.. ...+..+++|+.+++++|.+.. +... +..+..++.+.+.+ +.
T Consensus 129 ~I~~----i~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~----ie~~~~~~~~~l~~l~l~~-n~ 197 (414)
T KOG0531|consen 129 KITK----LEGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVD----IENDELSELISLEELDLGG-NS 197 (414)
T ss_pred cccc----ccchhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhh----hhhhhhhhccchHHHhccC-Cc
Confidence 9887 3457788889999999988753 2345668999999999999873 3332 57788999999987 44
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCC--eeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEK--LTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~--L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
+.... .+.....+..+.+..+.-..+..+... .. |+.+++.+|.+.. .+..+..++.+..|++.++.+...
T Consensus 198 i~~i~-----~~~~~~~l~~~~l~~n~i~~~~~l~~~-~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 198 IREIE-----GLDLLKKLVLLSLLDNKISKLEGLNEL-VMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred hhccc-----chHHHHHHHHhhcccccceeccCcccc-hhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc
Confidence 43222 122222222223322211222221211 22 7888888888763 335677888888888888877542
Q ss_pred eeeecCCCCccccEEEeccCCCCceeE---e-CCCcccccccccccccccCC
Q 009315 442 QMTCQKGWFPQLLVLKLWVLKELKRWS---I-EKETMPKLRELEIRRCQKLK 489 (537)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~~~l~~~~---~-~~~~~~~L~~L~l~~c~~l~ 489 (537)
.. ....+.+..+....++....+. . .....+.++.+.+.+++.-.
T Consensus 271 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 271 EG---LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cc---ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 21 3445566666665554332211 1 13456777888887777655
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.7e-09 Score=95.30 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=19.6
Q ss_pred cCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCC
Q 009315 325 DLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFL 365 (537)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 365 (537)
+|..|+++++.-.-+...+......+++|..|||++|+.++
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 34445555443221111333334556666666666655543
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.29 E-value=1.5e-08 Score=95.72 Aligned_cols=297 Identities=16% Similarity=0.074 Sum_probs=150.8
Q ss_pred eeEEEcCCCCC---CCCchhhccccccceeecCCC-CCCc--cCcccCCCCCCcEEeecCC-ccc--cCCcccccccccc
Q 009315 207 LRVLDLERVYK---PVLPETIGKLRLLRHVGLRWT-FLDS--IPKSLGDLPSLETLDVKRT-NIA--TLPKSIWKSSTLR 277 (537)
Q Consensus 207 L~~L~L~~~~~---~~lp~~~~~l~~L~~L~l~~~-~i~~--lp~~l~~l~~L~~L~L~~~-~l~--~lp~~i~~l~~L~ 277 (537)
||.|.+.|+.- ..+-....+++++..|.+.++ .++. +-..-..+++|+.|++..| .++ .+-.....+++|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 55555554432 122233345555555555555 2211 1011124566666666664 343 1111233456666
Q ss_pred EEeccccccccccCCCccCCccccccccceEEecCCC--CchHHhhcCccCcEEeEEEec-ccccHHHHHHHhccCCCcc
Q 009315 278 HLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKS--RPLNWLRNSKDLRKLGLTFHF-ESLQDQEITKWIKDLEHLE 354 (537)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~ 354 (537)
+|++++|.-.....+......+..++.+...+|.... .+...=..+..+.++++..+. ++.. .+...-..+..|+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~--~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE--DLWLIACGCHALQ 297 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch--HHHHHhhhhhHhh
Confidence 6666665432211222233444445555444332211 000001122334444433332 2221 3333334556677
Q ss_pred eEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeec---CCcCCccccCCCCeeEEEEecccCCCC--chhhhhcCCCcc
Q 009315 355 SLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKL---PRAIDINDQLPEKLTVFTLSLSHLSKD--PMPVLGQLKELK 429 (537)
Q Consensus 355 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~---~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~l~~L~ 429 (537)
.|..++|...+...-..+ -.+..+|+.+.+.++- ...+..+.+-.+.|+.+++..+..... +...-.+++.|+
T Consensus 298 ~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhcccCCCCCchHHHHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 777766555332211111 1234666766666542 111222233347788888888765422 222234688999
Q ss_pred EEEeccccccCce----eeecCCCCccccEEEeccCCCCceeE-eCCCcccccccccccccccCC---CccccCCCCCCC
Q 009315 430 ILRLFAHSYIGEQ----MTCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRELEIRRCQKLK---NPFESTNLTGLK 501 (537)
Q Consensus 430 ~L~L~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~---lp~~~~~l~~L~ 501 (537)
.|.++.|....+. ......+...|+.+.+++|+.+++-. .....+++||.+++-+|.... +...-.++|+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 9999988764432 11123567789999999998776532 233567899999999998876 444456788887
Q ss_pred EEEEec
Q 009315 502 ELTLTD 507 (537)
Q Consensus 502 ~L~l~~ 507 (537)
......
T Consensus 456 v~a~~a 461 (483)
T KOG4341|consen 456 VHAYFA 461 (483)
T ss_pred ehhhcc
Confidence 765543
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=7.2e-07 Score=57.68 Aligned_cols=38 Identities=29% Similarity=0.529 Sum_probs=20.5
Q ss_pred ccceeecCCCCCCccCcccCCCCCCcEEeecCCccccC
Q 009315 229 LLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATL 266 (537)
Q Consensus 229 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~l 266 (537)
+|++|++++|.|..+|..+++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555555555555566666655555543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=6.8e-08 Score=87.28 Aligned_cols=210 Identities=16% Similarity=0.047 Sum_probs=100.1
Q ss_pred ccceeecCCCCCCccCcc--c-CCCCCCcEEeecCCccc---cCCccccccccccEEeccccccccccCCCccCCccccc
Q 009315 229 LLRHVGLRWTFLDSIPKS--L-GDLPSLETLDVKRTNIA---TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKL 302 (537)
Q Consensus 229 ~L~~L~l~~~~i~~lp~~--l-~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 302 (537)
-+..|.+.++.|.+.-+. + ...+.++.|||.+|.++ ++..-+.+||.|+.|+++.|++.. . |+.++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s---~---I~~lp-- 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS---D---IKSLP-- 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC---c---cccCc--
Confidence 344556666666444321 2 34678889999998776 455556788999999999887655 1 22221
Q ss_pred cccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcc
Q 009315 303 QTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLT 382 (537)
Q Consensus 303 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~ 382 (537)
....+|+.|-+.+..+... .....+..++.++.|.++.|+.-....+. -+.-...+.+.
T Consensus 118 ------------------~p~~nl~~lVLNgT~L~w~--~~~s~l~~lP~vtelHmS~N~~rq~n~Dd-~c~e~~s~~v~ 176 (418)
T KOG2982|consen 118 ------------------LPLKNLRVLVLNGTGLSWT--QSTSSLDDLPKVTELHMSDNSLRQLNLDD-NCIEDWSTEVL 176 (418)
T ss_pred ------------------ccccceEEEEEcCCCCChh--hhhhhhhcchhhhhhhhccchhhhhcccc-ccccccchhhh
Confidence 1122334444433333321 23334445555555555552111000000 00000123344
Q ss_pred eEEEeeecCC---cCCccccCCCCeeEEEEecccCCCC-chhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEe
Q 009315 383 ELYLIGKLPR---AIDINDQLPEKLTVFTLSLSHLSKD-PMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKL 458 (537)
Q Consensus 383 ~l~l~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l 458 (537)
++++.++.-. ....+.+..+++..+-+..|.+... .-.....+|.+-.|+|+.+++........+.+|++|..|.+
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv 256 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRV 256 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeec
Confidence 4444333110 0011112225666666666654321 22334445555566666666544322223556666666666
Q ss_pred ccCCCCcee
Q 009315 459 WVLKELKRW 467 (537)
Q Consensus 459 ~~~~~l~~~ 467 (537)
.+++.+..+
T Consensus 257 ~~~Pl~d~l 265 (418)
T KOG2982|consen 257 SENPLSDPL 265 (418)
T ss_pred cCCcccccc
Confidence 666555443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=4.5e-08 Score=98.58 Aligned_cols=123 Identities=18% Similarity=0.102 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCc-cccccccccEEecccccc
Q 009315 208 RVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRF 286 (537)
Q Consensus 208 ~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 286 (537)
.+.+.++|.+..+..++.-++.|+.|+|++|++.... .+..|++|++|||++|.+..+|. +...+. |+.|.+++|.+
T Consensus 167 ~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 167 ATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred hhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 3344444444444445555556666666666555443 35556666666666666555553 122222 66666666655
Q ss_pred ccccCCCccCCccccccccceEEecCCCCc-hHHhhcCccCcEEeEEEecc
Q 009315 287 QLSAQKPFVNSSLTKLQTLWGLLIGKKSRP-LNWLRNSKDLRKLGLTFHFE 336 (537)
Q Consensus 287 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 336 (537)
.. ..++.++.+|+.|++++|-+.+.- ...+..+..|+.|++.+|.+
T Consensus 245 ~t----L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 245 TT----LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hh----hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 44 233555666666666555443311 12244455555666665554
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2e-06 Score=55.60 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=35.8
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK 245 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 245 (537)
++|++|++++|.+..+|+.+++|++|++|++++|.+.++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999999999889999999999999999988764
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=1.2e-06 Score=78.31 Aligned_cols=249 Identities=19% Similarity=0.163 Sum_probs=142.9
Q ss_pred CceeeEEEcCCCCCCC-----CchhhccccccceeecCCCCC----CccCc-------ccCCCCCCcEEeecCCccc-cC
Q 009315 204 YRLLRVLDLERVYKPV-----LPETIGKLRLLRHVGLRWTFL----DSIPK-------SLGDLPSLETLDVKRTNIA-TL 266 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i----~~lp~-------~l~~l~~L~~L~L~~~~l~-~l 266 (537)
+..+..++||||.+++ +...+.+-.+|+..+++.-.. ..+|+ .+-+|++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 6788999999887764 345566778888888876322 23333 3567899999999998766 44
Q ss_pred Cc----cccccccccEEeccccccccccCCCccCCcc-ccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHH
Q 009315 267 PK----SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSL-TKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQ 341 (537)
Q Consensus 267 p~----~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 341 (537)
|+ .|++-+.|.||.+++|.+.. .+=++. ..|++|. ......+-+.|+...+..|++.....
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp-----~aG~rigkal~~la---------~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGP-----IAGGRIGKALFHLA---------YNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCc-----cchhHHHHHHHHHH---------HHhhhccCCCceEEEeccchhccCcH
Confidence 44 35667788888888886543 111111 1233331 11123445677777777777653211
Q ss_pred H-HHHHhccCCCcceEEEEeeCCCCC-CCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCch
Q 009315 342 E-ITKWIKDLEHLESLMLRSVNDFLE-PSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPM 419 (537)
Q Consensus 342 ~-~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 419 (537)
. ....+..-..|+.+.+..|..-.. .....+..+ +. +.+|+.|+|.+|.++....
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl----------------------~y-~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL----------------------FY-SHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH----------------------HH-hCcceeeeccccchhhhhH
Confidence 2 222233335777777776322111 000011111 11 2677777777777664322
Q ss_pred ----hhhhcCCCccEEEeccccccCceeee-----cCCCCccccEEEeccCCCCceeE-------eCCCccccccccccc
Q 009315 420 ----PVLGQLKELKILRLFAHSYIGEQMTC-----QKGWFPQLLVLKLWVLKELKRWS-------IEKETMPKLRELEIR 483 (537)
Q Consensus 420 ----~~l~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~~~L~~L~l~ 483 (537)
..+...+.|+.|.+..|-+....... .-..+|+|..|...+|..-.... +..+++|-|..|.++
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 23344566777777777665432221 12346677777666654322211 234678999999999
Q ss_pred ccccCC
Q 009315 484 RCQKLK 489 (537)
Q Consensus 484 ~c~~l~ 489 (537)
+|..-.
T Consensus 312 gNr~~E 317 (388)
T COG5238 312 GNRIKE 317 (388)
T ss_pred cCcchh
Confidence 888754
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1e-07 Score=96.14 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=87.8
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc-cCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS-LGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
++.|+.|+|++|.+.+.- .+..|++|++|||++|.+..+|.- ...+. |+.|.+++|.++++- +|.+|.+|++||++
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccchh
Confidence 678999999999988874 888999999999999999988852 22344 999999999999874 78999999999999
Q ss_pred ccccccccCCCccCCccccccccceEEecCC
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKK 313 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~ 313 (537)
+|-+.+ ..-...++.+..|+.|++.+|...
T Consensus 263 yNll~~-hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 263 YNLLSE-HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhhhhc-chhhhHHHHHHHHHHHhhcCCccc
Confidence 998877 222334677889999999988764
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=2.4e-05 Score=76.18 Aligned_cols=132 Identities=24% Similarity=0.191 Sum_probs=77.8
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCC-CCCccCcccCCCCCCcEEeecCC-ccccCCccccccccccEEec
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWT-FLDSIPKSLGDLPSLETLDVKRT-NIATLPKSIWKSSTLRHLYM 281 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l 281 (537)
+++++.|++++|.+..+|. --.+|+.|.+++| .+..+|..+ ..+|++|++++| .+..+|.. |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEe
Confidence 6788999999888888882 2246999999875 667788755 368999999998 77777754 556666
Q ss_pred cccccccccCCCccCCccccccccceEEecCC--CCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEE
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKK--SRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLR 359 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 359 (537)
..+....-..+|. +|+.|.+..+... ...+. .-.++|+.|.+++|... .+|..+. .+|+.|.++
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i----~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI----ILPEKLP--ESLQSITLH 185 (426)
T ss_pred CCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcc----cCccccc--ccCcEEEec
Confidence 6544322011222 3455554221110 01110 01256777777766543 2232222 367777765
Q ss_pred e
Q 009315 360 S 360 (537)
Q Consensus 360 ~ 360 (537)
.
T Consensus 186 ~ 186 (426)
T PRK15386 186 I 186 (426)
T ss_pred c
Confidence 4
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=5.2e-07 Score=72.21 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=55.1
Q ss_pred eeeEEEcCCCCCCCCchhhc---cccccceeecCCCCCCccCcccC-CCCCCcEEeecCCccccCCccccccccccEEec
Q 009315 206 LLRVLDLERVYKPVLPETIG---KLRLLRHVGLRWTFLDSIPKSLG-DLPSLETLDVKRTNIATLPKSIWKSSTLRHLYM 281 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp~~~~---~l~~L~~L~l~~~~i~~lp~~l~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 281 (537)
.+-.+||+.+.+..+++... ...+|+..++++|.++..|+.+. +.+.+++|++++|.+..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34455666665555544433 33445555666666666665543 234666666666666666666666666666666
Q ss_pred cccccccccCCCccCCccccccccce
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWG 307 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~ 307 (537)
+.|.+.. .|..+..+.++..|+.
T Consensus 108 ~~N~l~~---~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 108 RFNPLNA---EPRVIAPLIKLDMLDS 130 (177)
T ss_pred ccCcccc---chHHHHHHHhHHHhcC
Confidence 6666554 3343444444444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=3.5e-06 Score=89.02 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=51.6
Q ss_pred CceeeEEEcCCCCC--CCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCC--ccccccccccEE
Q 009315 204 YRLLRVLDLERVYK--PVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLP--KSIWKSSTLRHL 279 (537)
Q Consensus 204 ~~~L~~L~L~~~~~--~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L 279 (537)
+|.|+.|.++|-.+ .++-.-..++++|+.||+|+++++.+ .++++|++||+|.+++=.+..-. ..+.+|++|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 66777777776432 22233345667777777777777666 55777777777777665554221 355667777777
Q ss_pred ecccccccc
Q 009315 280 YMSDIRFQL 288 (537)
Q Consensus 280 ~l~~~~~~~ 288 (537)
|+|......
T Consensus 226 DIS~~~~~~ 234 (699)
T KOG3665|consen 226 DISRDKNND 234 (699)
T ss_pred ecccccccc
Confidence 777654433
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=3e-05 Score=66.68 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=74.3
Q ss_pred CCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeE--eCCCccccccc
Q 009315 402 EKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWS--IEKETMPKLRE 479 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~ 479 (537)
.....++|++|.+.. ...|..+++|.+|.+.+|.++...+.. ...+|+|..|.+.+| .+.++. .....+|+|+.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccch-hhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 456678888887653 346777888888888888887755543 455778888888886 343332 23357889999
Q ss_pred ccccccccCC----CccccCCCCCCCEEEEecCc
Q 009315 480 LEIRRCQKLK----NPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 480 L~l~~c~~l~----lp~~~~~l~~L~~L~l~~c~ 509 (537)
|.+-+|+... --..+..+|+|+.||+.+..
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9998888765 23346778999999998865
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=6.7e-06 Score=74.71 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=60.1
Q ss_pred cCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEe--CCCcccccccccccccccCC-Ccc------cc
Q 009315 424 QLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSI--EKETMPKLRELEIRRCQKLK-NPF------ES 494 (537)
Q Consensus 424 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~~l~-lp~------~~ 494 (537)
-+|++..+-+..|.+...........+|.+..|.|..+ ++.+|.. ....||.|..|.+.++|... +-. -+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 46888888888887766555555778888888888775 6666653 34579999999999999876 222 36
Q ss_pred CCCCCCCEEEEe
Q 009315 495 TNLTGLKELTLT 506 (537)
Q Consensus 495 ~~l~~L~~L~l~ 506 (537)
++++.++.|+=+
T Consensus 276 aRL~~v~vLNGs 287 (418)
T KOG2982|consen 276 ARLTKVQVLNGS 287 (418)
T ss_pred eeccceEEecCc
Confidence 777888877543
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=5.5e-06 Score=66.49 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=74.5
Q ss_pred CceeeEEEcCCCCCCCCchhhcc-ccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGK-LRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~-l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
-..|...+|++|.++++|+.|.. .+..+.|++++|.|..+|.++..++.|+.|+++.|.+...|.-+..|.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 56788999999999999877754 45899999999999999999999999999999999999999988889999999988
Q ss_pred cccccc
Q 009315 283 DIRFQL 288 (537)
Q Consensus 283 ~~~~~~ 288 (537)
+|....
T Consensus 132 ~na~~e 137 (177)
T KOG4579|consen 132 ENARAE 137 (177)
T ss_pred CCcccc
Confidence 876654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2.1e-05 Score=83.24 Aligned_cols=103 Identities=27% Similarity=0.311 Sum_probs=54.6
Q ss_pred ceeeEEEcCCCC--CCCCchhhc-cccccceeecCCCCC--CccCcccCCCCCCcEEeecCCccccCCccccccccccEE
Q 009315 205 RLLRVLDLERVY--KPVLPETIG-KLRLLRHVGLRWTFL--DSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHL 279 (537)
Q Consensus 205 ~~L~~L~L~~~~--~~~lp~~~~-~l~~L~~L~l~~~~i--~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 279 (537)
.+|+.||++|.. ....|..++ .||.|+.|.+.+-.+ .+.-.-..+++||..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567777777642 222233333 457777777776443 12222234567777777777776666 566677777776
Q ss_pred eccccccccccCCCccCCccccccccceEE
Q 009315 280 YMSDIRFQLSAQKPFVNSSLTKLQTLWGLL 309 (537)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~ 309 (537)
.+.+-.+.. ..--..+-++++|+.|+++.
T Consensus 201 ~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFES-YQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCc-hhhHHHHhcccCCCeeeccc
Confidence 665543332 00111233445555555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=4.1e-05 Score=65.86 Aligned_cols=104 Identities=21% Similarity=0.129 Sum_probs=59.0
Q ss_pred ccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccc-cccccEEeccccccccccCCCccCCccccccccce
Q 009315 229 LLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWK-SSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWG 307 (537)
Q Consensus 229 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 307 (537)
..-.++|++|++..++. +..++.|.+|.+.+|.++.+.+.+.. +++|..|.+.+|++.. ..-..-+..++.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCCccceeee
Confidence 34556777776666543 56677777777777777766555543 4567777777776655 111222445555666655
Q ss_pred EEecCCC---CchHHhhcCccCcEEeEEEe
Q 009315 308 LLIGKKS---RPLNWLRNSKDLRKLGLTFH 334 (537)
Q Consensus 308 ~~~~~~~---~~~~~l~~l~~L~~L~l~~~ 334 (537)
.+|.... .-...+..+++|+.|++..-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5544331 11122455666666665543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00019 Score=70.15 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=80.8
Q ss_pred HhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeec--CCcCCccccCCCCeeEEEEecccCCCCchhhhh
Q 009315 346 WIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKL--PRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLG 423 (537)
Q Consensus 346 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 423 (537)
-+..+.+++.|++++| .++.. +. -+.+|+.|.+.++. ...+ ..+|++|++|++++|.....+|
T Consensus 47 r~~~~~~l~~L~Is~c-~L~sL-----P~--LP~sLtsL~Lsnc~nLtsLP---~~LP~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDC-DIESL-----PV--LPNELTEITIENCNNLTTLP---GSIPEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHHHhcCCCEEEeCCC-CCccc-----CC--CCCCCcEEEccCCCCcccCC---chhhhhhhheEccCcccccccc----
Confidence 3666789999999986 33321 11 23579999997642 1122 2346899999999984333444
Q ss_pred cCCCccEEEeccccccCceeeecCCC-CccccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCE
Q 009315 424 QLKELKILRLFAHSYIGEQMTCQKGW-FPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKE 502 (537)
Q Consensus 424 ~l~~L~~L~L~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~ 502 (537)
++|+.|+++.+.... +.. .++|+.|.+.++...........-.++|+.|.+.+|....+|..+. .+|+.
T Consensus 112 --~sLe~L~L~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~ 181 (426)
T PRK15386 112 --ESVRSLEIKGSATDS------IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQS 181 (426)
T ss_pred --cccceEEeCCCCCcc------cccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcE
Confidence 357777776554422 122 2467777775432211111111112578888888887666555443 47777
Q ss_pred EEEecC
Q 009315 503 LTLTDM 508 (537)
Q Consensus 503 L~l~~c 508 (537)
|+++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 777653
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=9.4e-06 Score=84.18 Aligned_cols=237 Identities=19% Similarity=0.124 Sum_probs=112.0
Q ss_pred ccccceeecCCC-CCCc--cCcccCCCCCCcEEeecCC--ccccCC----ccccccccccEEeccccccccccCCCccCC
Q 009315 227 LRLLRHVGLRWT-FLDS--IPKSLGDLPSLETLDVKRT--NIATLP----KSIWKSSTLRHLYMSDIRFQLSAQKPFVNS 297 (537)
Q Consensus 227 l~~L~~L~l~~~-~i~~--lp~~l~~l~~L~~L~L~~~--~l~~lp----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 297 (537)
++.|+.|.+.++ .+.. +-.....+++|+.|+++++ .....+ .....+.+|+.|+++.+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~----------- 255 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL----------- 255 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-----------
Confidence 566677766665 3433 2233455677777777663 111111 1222345555555555441
Q ss_pred ccccccccceEEecCCCCchHHhh-cCccCcEEeEEEec-ccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCC
Q 009315 298 SLTKLQTLWGLLIGKKSRPLNWLR-NSKDLRKLGLTFHF-ESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNL 375 (537)
Q Consensus 298 ~l~~L~~L~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 375 (537)
........+. .+++|+.|.+..+. ++.. .+......++.|++|++++|..++...-. ...
T Consensus 256 --------------isd~~l~~l~~~c~~L~~L~l~~c~~lt~~--gl~~i~~~~~~L~~L~l~~c~~~~d~~l~--~~~ 317 (482)
T KOG1947|consen 256 --------------VTDIGLSALASRCPNLETLSLSNCSNLTDE--GLVSIAERCPSLRELDLSGCHGLTDSGLE--ALL 317 (482)
T ss_pred --------------cCchhHHHHHhhCCCcceEccCCCCccchh--HHHHHHHhcCcccEEeeecCccchHHHHH--HHH
Confidence 1111112222 25566666655444 3332 55555556666777777765554221111 112
Q ss_pred CCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCC---CchhhhhcCCCccEEEeccccccCceeeecCCCCcc
Q 009315 376 SKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSK---DPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQ 452 (537)
Q Consensus 376 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 452 (537)
..+++++.+.+.+... ++.++.+.+..+.... ...-....+++++.+.+..+..........+.+++.
T Consensus 318 ~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~ 388 (482)
T KOG1947|consen 318 KNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPN 388 (482)
T ss_pred HhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcc
Confidence 2244444443322210 1445555555443321 222345677888888887776333221222444555
Q ss_pred ccEEEeccCCCCceeEeCCCcccccccccccccccCC--CccccCC-CCCCCEEEEecCchH
Q 009315 453 LLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK--NPFESTN-LTGLKELTLTDMEKS 511 (537)
Q Consensus 453 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~--lp~~~~~-l~~L~~L~l~~c~n~ 511 (537)
|. ..+.. .....++++.|.++.|...+ .-..... +..++.+++.+|+..
T Consensus 389 l~-~~l~~---------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 389 LT-ESLEL---------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cc-hHHHH---------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 42 22211 11223337777777777665 1111111 566777777777633
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=0.00026 Score=63.79 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=130.7
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCC----CCc-------hhhccccccceeecCCC
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKP----VLP-------ETIGKLRLLRHVGLRWT 238 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~----~lp-------~~~~~l~~L~~L~l~~~ 238 (537)
+..+..+.+.+|..|.-..+++.+.+. +-++|++.+++.-..+ .+| +.+-+|++|+..+||.|
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia------~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIA------NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHh------hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 444555666677666655555555432 2578888888844322 233 34567899999999998
Q ss_pred CCC-ccCc----ccCCCCCCcEEeecCCccccCCc-ccc-------------ccccccEEeccccccccccCCCccCCcc
Q 009315 239 FLD-SIPK----SLGDLPSLETLDVKRTNIATLPK-SIW-------------KSSTLRHLYMSDIRFQLSAQKPFVNSSL 299 (537)
Q Consensus 239 ~i~-~lp~----~l~~l~~L~~L~L~~~~l~~lp~-~i~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~l 299 (537)
-++ ..|+ -+++-+.|..|.+++|.+..+.. .|+ .-|.|+......|++.. .+..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen---gs~~---- 175 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN---GSKE---- 175 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc---CcHH----
Confidence 763 3333 35677899999999998763321 222 23556666655555433 1100
Q ss_pred ccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHH--HHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCC
Q 009315 300 TKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQ--EITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSK 377 (537)
Q Consensus 300 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 377 (537)
.....+....+|+.+.+..|.+....- -+-..+..+++|+.|+|.+ |.++......+
T Consensus 176 ---------------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~L----- 234 (388)
T COG5238 176 ---------------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYL----- 234 (388)
T ss_pred ---------------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHH-----
Confidence 011223334566666666666543200 1112344566777777776 43332111000
Q ss_pred CCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchh----hhh--cCCCccEEEeccccccCceeee------
Q 009315 378 HKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMP----VLG--QLKELKILRLFAHSYIGEQMTC------ 445 (537)
Q Consensus 378 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~l~--~l~~L~~L~L~~~~~~~~~~~~------ 445 (537)
...+ ..| +.|+.|.+.+|-++..... .+. ..|+|..|...+|...+..+..
T Consensus 235 ---------a~al---~~W-----~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~ 297 (388)
T COG5238 235 ---------ADAL---CEW-----NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF 297 (388)
T ss_pred ---------HHHh---ccc-----chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh
Confidence 0011 122 4466677777766543222 222 3567777777777665543322
Q ss_pred cCCCCccccEEEeccCC
Q 009315 446 QKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 446 ~~~~~~~L~~L~l~~~~ 462 (537)
.-..+|-|..|.+.+|.
T Consensus 298 e~~~~p~L~~le~ngNr 314 (388)
T COG5238 298 EQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhcccHHHHHHHHccCc
Confidence 12456667777776663
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=3.6e-05 Score=69.40 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=38.1
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCc--cccccccccEEec
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPK--SIWKSSTLRHLYM 281 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l 281 (537)
+.+.+.|+..|+.+.++ ....+++.|..|.|+-|+|.++-. +..|++|++|.|+.|.|..+.+ .+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 33445555555555444 223345555555555555555422 4455555555555554443321 2334444444444
Q ss_pred cccc
Q 009315 282 SDIR 285 (537)
Q Consensus 282 ~~~~ 285 (537)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 4443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00042 Score=62.42 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=34.2
Q ss_pred cccccceeecCCCCCCccCcccCCCCCCcEEeecCC--ccc-cCCccccccccccEEeccccccc
Q 009315 226 KLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRT--NIA-TLPKSIWKSSTLRHLYMSDIRFQ 287 (537)
Q Consensus 226 ~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~~ 287 (537)
.+..|..|.+.+..+.++- .+-.|++|+.|.++.| .+. .++.-..++++|++|++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444555555554443331 1334667777777777 333 45444555677777777777654
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00054 Score=61.69 Aligned_cols=113 Identities=22% Similarity=0.110 Sum_probs=71.8
Q ss_pred cCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCC-CchHHhhcCcc
Q 009315 247 LGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKS-RPLNWLRNSKD 325 (537)
Q Consensus 247 l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~ 325 (537)
.-.+..|+.|.+.++.++.+. .+-.|++|+.|.++.|.......++.....+++|++|+++.|.+.. .....+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 345677888888888776543 4557899999999999433322455556667888888888887652 22334566777
Q ss_pred CcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 326 LRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
|..|++.+|..+.....-...+.-+++|+.|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77788777765532112223344556666665443
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00011 Score=63.27 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCccccEEEeccCCCCceeEe--CCCcccccccccccccccCC--CccccCCCCCCCEEEEecC
Q 009315 448 GWFPQLLVLKLWVLKELKRWSI--EKETMPKLRELEIRRCQKLK--NPFESTNLTGLKELTLTDM 508 (537)
Q Consensus 448 ~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~~l~--lp~~~~~l~~L~~L~l~~c 508 (537)
..+++++.|.+.+|..+..|.. -.+..|+|+.|+|++|+.++ --..+..+++|+.|.+.+-
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 3344444444444444444321 11245666666666666665 3445566666666666653
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=7.7e-05 Score=67.33 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=39.7
Q ss_pred eeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeE--eCCCccccccccc
Q 009315 404 LTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWS--IEKETMPKLRELE 481 (537)
Q Consensus 404 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~ 481 (537)
.++|+..+|.+.+ ......+|.|+.|.|+-|+++...+ +..|++|++|+|..| .+.++. .-..++|+|+.|.
T Consensus 21 vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 21 VKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred hhhhcccCCCccH--HHHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 3444444444431 2233444444444444444433221 334444444444443 111111 1113455555555
Q ss_pred ccccccCC-Ccc-----ccCCCCCCCEEE
Q 009315 482 IRRCQKLK-NPF-----ESTNLTGLKELT 504 (537)
Q Consensus 482 l~~c~~l~-lp~-----~~~~l~~L~~L~ 504 (537)
|..||-.. -+. .+.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 55555443 111 134455666554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.27 E-value=0.0019 Score=34.61 Aligned_cols=17 Identities=41% Similarity=0.421 Sum_probs=7.5
Q ss_pred cceeecCCCCCCccCcc
Q 009315 230 LRHVGLRWTFLDSIPKS 246 (537)
Q Consensus 230 L~~L~l~~~~i~~lp~~ 246 (537)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.24 E-value=0.0019 Score=34.57 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=14.1
Q ss_pred CCcEEeecCCccccCCccccc
Q 009315 252 SLETLDVKRTNIATLPKSIWK 272 (537)
Q Consensus 252 ~L~~L~L~~~~l~~lp~~i~~ 272 (537)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766544
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.74 E-value=0.0022 Score=66.50 Aligned_cols=107 Identities=25% Similarity=0.243 Sum_probs=47.8
Q ss_pred CCCeeEEEEecc-cCCCCc----hhhhhcCCCccEEEecccc-ccCceeeecCCCCccccEEEeccCCCCce--eEeCCC
Q 009315 401 PEKLTVFTLSLS-HLSKDP----MPVLGQLKELKILRLFAHS-YIGEQMTCQKGWFPQLLVLKLWVLKELKR--WSIEKE 472 (537)
Q Consensus 401 ~~~L~~L~L~~~-~~~~~~----~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~ 472 (537)
.+.|+.|+++++ ...... ......+++|+.|+++.+. +++.........+++|+.|.+.+|..+.. +.....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 356666666652 111111 1223345566666666655 33222222122355666666555543221 111123
Q ss_pred cccccccccccccccCC---CccccCCCCCCCEEEEec
Q 009315 473 TMPKLRELEIRRCQKLK---NPFESTNLTGLKELTLTD 507 (537)
Q Consensus 473 ~~~~L~~L~l~~c~~l~---lp~~~~~l~~L~~L~l~~ 507 (537)
.+|+|++|++++|.... +.....++++|+.+.+..
T Consensus 293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 45556666666665543 333334455555544433
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.57 E-value=0.00031 Score=61.84 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=72.5
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
++..++||++.+....+-..++.++.|..|+++.|.+..+|..++.+..+..+++..|+++..|.+.++++.+++++..+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 57788999998877777777888888888999988888889888888888888888888888898999999999988888
Q ss_pred ccccc
Q 009315 284 IRFQL 288 (537)
Q Consensus 284 ~~~~~ 288 (537)
+.+..
T Consensus 121 ~~~~~ 125 (326)
T KOG0473|consen 121 TEFFR 125 (326)
T ss_pred CcchH
Confidence 76554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.15 E-value=0.036 Score=45.63 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=41.5
Q ss_pred CceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCCc-cccccccccEEe
Q 009315 204 YRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLY 280 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~ 280 (537)
+++|+.+.+.. .+..++ ..|..+++|+.+.+.++ +..++. .+.++..|+.+.+.. .+..++. .+..+++|+.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 55666666654 344442 34566666777777654 555543 245565677777754 4443333 334466677666
Q ss_pred ccccccccccCCCccCCccccccccc
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLW 306 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~ 306 (537)
+..+ +.. .....+.++ +|+.+.
T Consensus 88 ~~~~-~~~--i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 88 IPSN-ITE--IGSSSFSNC-NLKEIN 109 (129)
T ss_dssp ETTT--BE--EHTTTTTT--T--EEE
T ss_pred cCcc-ccE--EchhhhcCC-CceEEE
Confidence 6543 222 223344444 555443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.09 E-value=0.014 Score=28.86 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=5.5
Q ss_pred CCcEEeecCCccccC
Q 009315 252 SLETLDVKRTNIATL 266 (537)
Q Consensus 252 ~L~~L~L~~~~l~~l 266 (537)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.70 E-value=0.019 Score=28.43 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=7.8
Q ss_pred ccceeecCCCCCCccC
Q 009315 229 LLRHVGLRWTFLDSIP 244 (537)
Q Consensus 229 ~L~~L~l~~~~i~~lp 244 (537)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.33 E-value=0.0023 Score=56.54 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=76.0
Q ss_pred hhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCcccc
Q 009315 222 ETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTK 301 (537)
Q Consensus 222 ~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 301 (537)
..+.....-+.||++.|.+..+-..++.++.|..||++.+.+..+|.+.+.+..+++++++.|.... .|..++..+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~---~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ---QPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh---CCccccccCC
Confidence 3566788899999999988777777888999999999999999999999999999999999998877 7888999999
Q ss_pred ccccceEEec
Q 009315 302 LQTLWGLLIG 311 (537)
Q Consensus 302 L~~L~~~~~~ 311 (537)
++.++.-.+.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 9988876654
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.16 E-value=0.21 Score=40.91 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=52.3
Q ss_pred CcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCc-c
Q 009315 169 HLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPK-S 246 (537)
Q Consensus 169 ~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~ 246 (537)
.+++|+.+.+.+ ....++...|.+ ++.|+.+.+.++ +..++ ..+.+++.|+.+.+.+ .+..++. .
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~----------~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSN----------CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-----------TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred CCCCCCEEEECC-CeeEeChhhccc----------cccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 344566655443 233444443433 677888888875 55554 4677887899999976 5555554 3
Q ss_pred cCCCCCCcEEeecCCccccCCc-cccccccccEEeccc
Q 009315 247 LGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSD 283 (537)
Q Consensus 247 l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 283 (537)
+..+++|+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 566899999999765 555544 34555 888887765
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=0.015 Score=50.55 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCcee-eecCCCCccccEEEeccCCCCceeE-eCCCccccccc
Q 009315 402 EKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQM-TCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRE 479 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 479 (537)
..++.++-+++.+..+...-+.+++.++.|.+.+|...++.- ..--+..++|+.|+|++|+.+++-. .....+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 468889999998887788889999999999999987654321 1112468999999999999876532 22356899999
Q ss_pred ccccccccCC
Q 009315 480 LEIRRCQKLK 489 (537)
Q Consensus 480 L~l~~c~~l~ 489 (537)
|.|.+-+...
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 9998766544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.92 E-value=0.13 Score=28.69 Aligned_cols=19 Identities=32% Similarity=0.732 Sum_probs=9.3
Q ss_pred CCCcEEeecCCccccCCcc
Q 009315 251 PSLETLDVKRTNIATLPKS 269 (537)
Q Consensus 251 ~~L~~L~L~~~~l~~lp~~ 269 (537)
++|++|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555544443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.92 E-value=0.13 Score=28.69 Aligned_cols=19 Identities=32% Similarity=0.732 Sum_probs=9.3
Q ss_pred CCCcEEeecCCccccCCcc
Q 009315 251 PSLETLDVKRTNIATLPKS 269 (537)
Q Consensus 251 ~~L~~L~L~~~~l~~lp~~ 269 (537)
++|++|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555544443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.22 E-value=0.14 Score=28.46 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=13.5
Q ss_pred ccccceeecCCCCCCccCcc
Q 009315 227 LRLLRHVGLRWTFLDSIPKS 246 (537)
Q Consensus 227 l~~L~~L~l~~~~i~~lp~~ 246 (537)
+++|++|+|++|.|..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777777654
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.22 E-value=0.14 Score=28.46 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=13.5
Q ss_pred ccccceeecCCCCCCccCcc
Q 009315 227 LRLLRHVGLRWTFLDSIPKS 246 (537)
Q Consensus 227 l~~L~~L~l~~~~i~~lp~~ 246 (537)
+++|++|+|++|.|..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777777654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.47 E-value=0.032 Score=56.90 Aligned_cols=157 Identities=21% Similarity=0.097 Sum_probs=76.1
Q ss_pred CceeeEEEcCCCCCCCC-----chhhccc-cccceeecCCCCCC-----ccCcccCCCCCCcEEeecCCccc-----cCC
Q 009315 204 YRLLRVLDLERVYKPVL-----PETIGKL-RLLRHVGLRWTFLD-----SIPKSLGDLPSLETLDVKRTNIA-----TLP 267 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~l-----p~~~~~l-~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~l~-----~lp 267 (537)
...|..|++++|.++.. -..+... ..|++|++..|.+. .+.+.+.....++.++++.|.+. .++
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 55667777776655521 1112222 45666666666552 33444555677777777777542 222
Q ss_pred cccc----ccccccEEecccccccccc--CCCccCCcccc-ccccceEEecCCCC----chHHhhcC-ccCcEEeEEEec
Q 009315 268 KSIW----KSSTLRHLYMSDIRFQLSA--QKPFVNSSLTK-LQTLWGLLIGKKSR----PLNWLRNS-KDLRKLGLTFHF 335 (537)
Q Consensus 268 ~~i~----~l~~L~~L~l~~~~~~~~~--~~~~~~~~l~~-L~~L~~~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~ 335 (537)
..+. ...++++|++++|.++... .....+...++ +..+++..|..... ....+..+ ..++.+++..|.
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC
Confidence 2232 3556666666666544300 01112223333 34455444444321 12223333 455666666666
Q ss_pred cccc-HHHHHHHhccCCCcceEEEEe
Q 009315 336 ESLQ-DQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 336 ~~~~-~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+... ...+...+..++.++.+.++.
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhccc
Confidence 5432 224445555555666666655
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.19 E-value=0.019 Score=58.49 Aligned_cols=182 Identities=21% Similarity=0.068 Sum_probs=110.9
Q ss_pred eeEEEcCCCCCCCC-----chhhccccccceeecCCCCCCcc-----CcccCCC-CCCcEEeecCCccc-----cCCccc
Q 009315 207 LRVLDLERVYKPVL-----PETIGKLRLLRHVGLRWTFLDSI-----PKSLGDL-PSLETLDVKRTNIA-----TLPKSI 270 (537)
Q Consensus 207 L~~L~L~~~~~~~l-----p~~~~~l~~L~~L~l~~~~i~~l-----p~~l~~l-~~L~~L~L~~~~l~-----~lp~~i 270 (537)
+..|.|.+|.+..- -..+....+|..|++++|.++.- -..+... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77888888766543 24566778899999999988621 1122222 56788888888665 345567
Q ss_pred cccccccEEecccccccc--ccCCCccC----CccccccccceEEecCCCC----chHHhhcCcc-CcEEeEEEeccccc
Q 009315 271 WKSSTLRHLYMSDIRFQL--SAQKPFVN----SSLTKLQTLWGLLIGKKSR----PLNWLRNSKD-LRKLGLTFHFESLQ 339 (537)
Q Consensus 271 ~~l~~L~~L~l~~~~~~~--~~~~~~~~----~~l~~L~~L~~~~~~~~~~----~~~~l~~l~~-L~~L~l~~~~~~~~ 339 (537)
.....++.++++.|.+.. ...++..+ ....++++|.+..+..... .-..+...+. +++|++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 778889999999887642 01122233 3577888888888776531 1233445555 67788888877642
Q ss_pred -HHHHHHHhccC-CCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEee
Q 009315 340 -DQEITKWIKDL-EHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIG 388 (537)
Q Consensus 340 -~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 388 (537)
.+.+...+..+ ..++.+++..|.............+..+..++.+.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 33455556666 67888888884433322222222233344555555533
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.58 E-value=1.2 Score=24.69 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=8.9
Q ss_pred ccceeecCCCCCCccCc
Q 009315 229 LLRHVGLRWTFLDSIPK 245 (537)
Q Consensus 229 ~L~~L~l~~~~i~~lp~ 245 (537)
+|++|++++|++.++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555555554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.33 E-value=2.4 Score=23.62 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=7.8
Q ss_pred CCCcEEeecCCccc
Q 009315 251 PSLETLDVKRTNIA 264 (537)
Q Consensus 251 ~~L~~L~L~~~~l~ 264 (537)
.+|++|++++|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555666655554
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.20 E-value=2 Score=23.20 Aligned_cols=14 Identities=50% Similarity=0.840 Sum_probs=6.5
Q ss_pred CCCcEEeecCCccc
Q 009315 251 PSLETLDVKRTNIA 264 (537)
Q Consensus 251 ~~L~~L~L~~~~l~ 264 (537)
++|++|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555544
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.72 E-value=2.7 Score=23.27 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=10.0
Q ss_pred CCCCCEEEEecCchH
Q 009315 497 LTGLKELTLTDMEKS 511 (537)
Q Consensus 497 l~~L~~L~l~~c~n~ 511 (537)
+++|++|++++|++.
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 466777777777643
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.54 E-value=1.8 Score=43.83 Aligned_cols=79 Identities=23% Similarity=0.064 Sum_probs=47.2
Q ss_pred CCeeEEEEecccCCCC--chhhhhcCCCccEEEeccc--cccCceeeecCCCCccccEEEeccCCCCceeEeC-------
Q 009315 402 EKLTVFTLSLSHLSKD--PMPVLGQLKELKILRLFAH--SYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIE------- 470 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~------- 470 (537)
+.+..++|++|++... .-..-...|+|+.|+|++| .+....... --+...|++|-+.||+..+.....
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 6788899999987642 1122234688899999888 332221111 223456888888888765543311
Q ss_pred CCccccccccc
Q 009315 471 KETMPKLRELE 481 (537)
Q Consensus 471 ~~~~~~L~~L~ 481 (537)
...||+|..|+
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 13577776664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.07 E-value=4.2 Score=41.37 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCCeeEEEEecccCCCCchhhhhc--CCCccEEEeccccccCceeee------cCCCCccccEEE
Q 009315 401 PEKLTVFTLSLSHLSKDPMPVLGQ--LKELKILRLFAHSYIGEQMTC------QKGWFPQLLVLK 457 (537)
Q Consensus 401 ~~~L~~L~L~~~~~~~~~~~~l~~--l~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~L~ 457 (537)
.|+|..|+|++|...-.....+.. ...|++|-+.+|.+....... ....||+|..|+
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 367777777777221112223332 234677777777765432211 123577776664
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.34 E-value=10 Score=21.41 Aligned_cols=12 Identities=33% Similarity=0.288 Sum_probs=5.7
Q ss_pred ccceeecCCCCC
Q 009315 229 LLRHVGLRWTFL 240 (537)
Q Consensus 229 ~L~~L~l~~~~i 240 (537)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344455554444
No 93
>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process
Probab=39.77 E-value=56 Score=29.88 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=47.3
Q ss_pred hhHHHHHhhcCh-----------hhhhhHHHHhcCCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhcccccccCCCC
Q 009315 10 DDQSTTLDQLSF-----------RDISSIWVFANKSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEENYM 78 (537)
Q Consensus 10 ~~W~~~l~~~~~-----------~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~ 78 (537)
+-|..+.+.+.. ++|.++|..-+..||....+ | | -|+||=-.+++++..+
T Consensus 15 EsW~s~AKyL~eDvP~LLkse~v~~v~~vls~vf~SlPsn~~~-------F-----I-------KWVaEVRR~Edg~~~L 75 (264)
T PF09328_consen 15 ESWISMAKYLMEDVPRLLKSEDVKDVEEVLSVVFKSLPSNFGE-------F-----I-------KWVAEVRRQEDGGSSL 75 (264)
T ss_pred CcHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHhcCchhHHH-------H-----h-------hhheeEEecccCCCCC
Confidence 679999988754 46999999999999987544 1 1 3899888888887777
Q ss_pred ChHHHHHHHHHH
Q 009315 79 APEDQVKTIFDQ 90 (537)
Q Consensus 79 ~~~~~g~~~~~~ 90 (537)
+.||.++-.+.+
T Consensus 76 S~EEk~RL~lKe 87 (264)
T PF09328_consen 76 SKEEKERLALKE 87 (264)
T ss_pred CHHHHHHHHHHH
Confidence 888888655543
No 94
>PF14162 YozD: YozD-like protein
Probab=37.79 E-value=33 Score=22.44 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHhhccceEe
Q 009315 79 APEDQVKTIFDQLELMNMIEV 99 (537)
Q Consensus 79 ~~~~~g~~~~~~L~~~~ll~~ 99 (537)
+.|++|+-.+.+|+.||++-.
T Consensus 9 DTEEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCc
Confidence 678999999999999999843
No 95
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.03 E-value=83 Score=19.91 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=4.8
Q ss_pred CCCCeeEEEE
Q 009315 400 LPEKLTVFTL 409 (537)
Q Consensus 400 ~~~~L~~L~L 409 (537)
+|++|++|.+
T Consensus 32 lP~sl~~L~f 41 (44)
T PF05725_consen 32 LPNSLKSLSF 41 (44)
T ss_pred cCCCceEEEe
Confidence 3445555544
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=32.88 E-value=83 Score=35.58 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=52.5
Q ss_pred hhhHHHH-hcCCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhcccccccCCCCChHHHHHHHHHHHhhccceEeeec
Q 009315 24 ISSIWVF-ANKSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEENYMAPEDQVKTIFDQLELMNMIEVVKR 102 (537)
Q Consensus 24 i~~~L~l-SY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~ 102 (537)
+.+.+.- .|+.||++.++.++..|+++ .|+. ++.. ...+. +.+...+++|...+++.....
T Consensus 251 ~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~-----~l~~~---------~~~~~~L~~l~~~~l~~~~~~ 312 (903)
T PRK04841 251 LSDYLVEEVLDNVDLETRHFLLRCSVLR---SMND-ALIV-----RVTGE---------ENGQMRLEELERQGLFIQRMD 312 (903)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCH-HHHH-----HHcCC---------CcHHHHHHHHHHCCCeeEeec
Confidence 4444333 37899999999999999986 3342 2222 22211 124677999999999753221
Q ss_pred CCCCCeeEEEcChhHHHHHhhhh
Q 009315 103 KPDGKPKTCRVPSSLSDNLFPKA 125 (537)
Q Consensus 103 ~~~~~~~~~~mhdl~~d~~~~~~ 125 (537)
..+ ..|+.|++++++..+..
T Consensus 313 -~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 313 -DSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CCC--CEEehhHHHHHHHHHHH
Confidence 112 25778999999988764
No 97
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=29.32 E-value=26 Score=35.80 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=15.2
Q ss_pred hcCCCcHhHHHHhhhh
Q 009315 31 ANKSLSPHLKACLHYF 46 (537)
Q Consensus 31 SY~~L~~~lk~cFl~~ 46 (537)
|||+|..+.|.|+||+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999986
No 98
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=25.92 E-value=1.8e+02 Score=21.67 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhcccccccCCCCChHHHHHHHHHHHhhccceEeeecC
Q 009315 33 KSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEENYMAPEDQVKTIFDQLELMNMIEVVKRK 103 (537)
Q Consensus 33 ~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~ 103 (537)
.+++-..+.++ ...||.- |--.++|. |+.+.+-.. ...+.|..|-..|++.++|..+..+
T Consensus 12 ~Gl~ikdR~~~--~~~~p~~--F~GsdlVd-WL~~~~~~~------~~R~eAv~~g~~Ll~~G~i~HV~~~ 71 (84)
T cd04438 12 SGLEIKDRMWL--KITIPNS--FIGSDLVD-WLLSHVEGL------TDRREARKYASSLLKLGYIRHTVNK 71 (84)
T ss_pred CCCceEEEEEe--eEECCcc--ccchHHHH-HHHHhCCCC------CCHHHHHHHHHHHHHCCcEEecCCC
Confidence 34444444443 2344432 23567888 666644211 3346788999999999999887544
No 99
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=25.85 E-value=1.3e+02 Score=25.50 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=36.9
Q ss_pred hHHHHhcCCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhcccccccCCCCChHHHHHHHHHHHhhccc
Q 009315 26 SIWVFANKSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEENYMAPEDQVKTIFDQLELMNM 96 (537)
Q Consensus 26 ~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~~~~~L~~~~l 96 (537)
.-+--+|-.|....|-.|.|- .-.||++|.|-+...++ .+-+.|...++.+..-.|
T Consensus 86 t~isR~Y~~ls~n~KL~fWY~--------------Lae~M~~G~VipvP~~Y-~ls~~a~~vl~~I~~Ldf 141 (159)
T PF09150_consen 86 TPISRAYGALSANTKLGFWYQ--------------LAEGMEQGTVIPVPSGY-QLSENANEVLEAIKQLDF 141 (159)
T ss_dssp -HHHHHHHCC-HHHHHHHHHH--------------HHHHHHTTSS--S-TT-----HHHHHHHHHHHCS-H
T ss_pred CHHHHHHhccCCcchHHHHHH--------------HHHHhcCCcEecCCCCC-CcCHHHHHHHHHHHcCCh
Confidence 345778999999999999993 45799999999988887 777888888877654443
No 100
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=25.10 E-value=1.7e+02 Score=21.84 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=28.8
Q ss_pred chhhHHHHHHHhcccccccCCCCChHHHHHHHHHHHhhccceEeeec
Q 009315 56 SVRRLLQLWLAERLETPIEENYMAPEDQVKTIFDQLELMNMIEVVKR 102 (537)
Q Consensus 56 ~~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~ 102 (537)
.-.++|.+.+..|.+ ...+.|-.+-+.|++.|+|..+..
T Consensus 32 ~GselVdWL~~~~~~--------~sR~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 32 CGCDLVSWLIEVGLA--------QDRGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHCCCEEecCC
Confidence 456888866655554 334568888999999999998753
No 101
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=23.46 E-value=1.7e+02 Score=21.88 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=29.2
Q ss_pred hhhHHHHHHHhcccccccCCCCChHHHHHHHHHHHhhccceEeeec
Q 009315 57 VRRLLQLWLAERLETPIEENYMAPEDQVKTIFDQLELMNMIEVVKR 102 (537)
Q Consensus 57 ~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~ 102 (537)
-.++|.+-+..|.+ ...+.|-.|-..|++.++|+.+..
T Consensus 35 GsElVdWL~~~~~~--------~sR~eAv~lgq~Ll~~gii~HV~~ 72 (85)
T cd04441 35 GSEFIDWLLQEGEA--------ESRREAVQLCRRLLEHGIIQHVSN 72 (85)
T ss_pred chHHHHHHHHcCCC--------CCHHHHHHHHHHHHHCCCEEecCC
Confidence 45788887777743 345678889999999999998753
No 102
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=21.80 E-value=2.7e+02 Score=21.43 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHhhccceEeeecCCCCCeeEEEcChhHHHH
Q 009315 79 APEDQVKTIFDQLELMNMIEVVKRKPDGKPKTCRVPSSLSDN 120 (537)
Q Consensus 79 ~~~~~g~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~ 120 (537)
.....|+.|++.|++++++...+ .|+.+.|..-+--.++
T Consensus 43 lny~~~~~yi~~L~~~Gli~~~~---~~~~~~y~lT~KG~~f 81 (95)
T COG3432 43 LNYKRAQKYIEMLVEKGLIIKQD---NGRRKVYELTEKGKRF 81 (95)
T ss_pred cCHHHHHHHHHHHHhCCCEEecc---CCccceEEEChhHHHH
Confidence 45789999999999999776543 3333355555554444
No 103
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.24 E-value=2e+02 Score=21.98 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=30.4
Q ss_pred hhhHHHHHHHhcccccccCCCCChHHHHHHHHHHHhhccceEeeecC
Q 009315 57 VRRLLQLWLAERLETPIEENYMAPEDQVKTIFDQLELMNMIEVVKRK 103 (537)
Q Consensus 57 ~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~ 103 (537)
-.++|.+.+.+|-+. ..+.|-.|-..|++.++|+-+..+
T Consensus 40 GsElVdWLi~~g~~~--------tR~eAv~~gq~Ll~~gii~HV~~~ 78 (93)
T cd04440 40 ASKLVDWLLAQGDCR--------TREEAVILGVGLCNNGFMHHVLEK 78 (93)
T ss_pred hhHHHHHHHHcCCCC--------CHHHHHHHHHHHHhCCCEEecCCC
Confidence 458898888888663 356788889999999999887643
No 104
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=21.20 E-value=1.9e+02 Score=20.55 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.3
Q ss_pred cchhhHHHHHHH--hcccccccCCCCChHHHHHHHHHHHhhccceEeeecC
Q 009315 55 VSVRRLLQLWLA--ERLETPIEENYMAPEDQVKTIFDQLELMNMIEVVKRK 103 (537)
Q Consensus 55 i~~~~Li~~Wia--~g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~ 103 (537)
|.-.++|++-+. +|++ ...+.|..+-+.|+++++|+.+...
T Consensus 18 F~G~e~v~WL~~~~~~~~--------~~r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 18 FTGSEAVDWLMDNFEGFV--------RDREEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEHHHHHHHHHHTSCTST--------SSHHHHHHHHHHHHHCTSEEESSSS
T ss_pred eEhHHHHHHHHHhccccc--------cCHHHHHHHHHHHHHCCCEEECCCC
Confidence 345677776664 4554 4567788889999999999987543
No 105
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=20.73 E-value=2.3e+02 Score=20.92 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=29.7
Q ss_pred chhhHHHHHHHhcccccccCCCCChHHHHHHHHHHHhhccceEeeecC
Q 009315 56 SVRRLLQLWLAERLETPIEENYMAPEDQVKTIFDQLELMNMIEVVKRK 103 (537)
Q Consensus 56 ~~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~ 103 (537)
--.++|++-+..|.+ ...+.|-.+-..|++.++|+++..+
T Consensus 30 ~GselVdWL~~~~~~--------~~R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 30 LGKELVNWLIRQGKA--------ATRVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred ChHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHCCCEEecCCC
Confidence 345788887777654 3356788889999999999987643
No 106
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=20.27 E-value=2.1e+02 Score=19.65 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=22.0
Q ss_pred HHHHHHHHhhccceEeeecCCCCCeeEEE
Q 009315 84 VKTIFDQLELMNMIEVVKRKPDGKPKTCR 112 (537)
Q Consensus 84 g~~~~~~L~~~~ll~~~~~~~~~~~~~~~ 112 (537)
+...++.|+.+++++......+++...+.
T Consensus 35 vs~~i~~L~~~glv~~~~~~~d~R~~~~~ 63 (68)
T PF13463_consen 35 VSRIIKKLEEKGLVEKERDPHDKRSKRYR 63 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCTTSEEEE
T ss_pred HHHHHHHHHHCCCEEecCCCCcCCeeEEE
Confidence 44779999999999887766666655554
Done!