Query 009315
Match_columns 537
No_of_seqs 379 out of 4095
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 23:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-32 6.7E-37 297.4 6.6 249 170-439 293-551 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.3E-32 7.9E-37 296.8 6.7 246 205-461 294-548 (768)
3 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-30 1.3E-34 267.9 18.4 316 171-508 21-454 (520)
4 4eco_A Uncharacterized protein 100.0 2.1E-31 7.1E-36 282.8 7.3 314 201-528 202-570 (636)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-30 5.2E-35 276.0 12.8 333 167-524 52-544 (606)
6 3o6n_A APL1; leucine-rich repe 100.0 1.7E-29 6E-34 252.8 19.1 307 167-509 41-350 (390)
7 2id5_A Lingo-1, leucine rich r 100.0 7.2E-29 2.4E-33 255.2 21.0 294 205-509 32-331 (477)
8 4fmz_A Internalin; leucine ric 100.0 5.2E-29 1.8E-33 245.3 17.7 304 168-509 41-344 (347)
9 2z63_A TOLL-like receptor 4, v 100.0 3.6E-30 1.2E-34 271.2 10.0 124 167-302 48-175 (570)
10 3v47_A TOLL-like receptor 5B a 100.0 3.7E-29 1.3E-33 255.9 16.8 322 167-509 50-406 (455)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3E-29 1E-33 266.1 16.5 341 170-528 31-525 (606)
12 3oja_B Anopheles plasmodium-re 100.0 7E-29 2.4E-33 261.9 18.7 306 168-509 48-356 (597)
13 4ecn_A Leucine-rich repeat pro 100.0 3.1E-30 1E-34 278.6 8.4 292 203-509 489-838 (876)
14 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.8E-29 2.7E-33 260.1 18.1 331 170-526 51-499 (562)
15 4ecn_A Leucine-rich repeat pro 100.0 6.3E-30 2.2E-34 276.2 9.4 314 201-528 444-810 (876)
16 3t6q_A CD180 antigen; protein- 100.0 2.2E-29 7.4E-34 267.2 13.2 125 402-528 325-453 (606)
17 3v47_A TOLL-like receptor 5B a 100.0 3.9E-30 1.3E-34 263.2 6.8 349 170-537 29-405 (455)
18 3t6q_A CD180 antigen; protein- 100.0 5.6E-29 1.9E-33 264.0 14.8 252 247-507 274-532 (606)
19 4eco_A Uncharacterized protein 100.0 4.6E-29 1.6E-33 264.8 13.9 313 169-509 247-598 (636)
20 1o6v_A Internalin A; bacterial 100.0 5.2E-28 1.8E-32 247.7 20.2 318 165-528 62-379 (466)
21 2z81_A CD282 antigen, TOLL-lik 100.0 8.2E-29 2.8E-33 259.6 13.7 158 167-337 46-209 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-28 7.5E-33 254.5 16.7 329 174-528 3-448 (520)
23 4fmz_A Internalin; leucine ric 100.0 1.1E-28 3.6E-33 243.1 13.3 295 203-528 42-337 (347)
24 3o6n_A APL1; leucine-rich repe 100.0 1.1E-28 3.6E-33 247.1 13.1 283 204-509 44-329 (390)
25 1o6v_A Internalin A; bacterial 100.0 1.8E-27 6.1E-32 243.8 22.4 301 167-509 86-386 (466)
26 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-28 1.4E-32 266.1 18.4 317 169-507 22-390 (844)
27 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-27 5.1E-32 250.0 20.4 322 170-509 25-421 (549)
28 2id5_A Lingo-1, leucine rich r 100.0 7.5E-28 2.6E-32 247.6 17.4 298 170-489 31-334 (477)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-27 6.3E-32 241.9 19.0 296 168-508 39-349 (457)
30 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-28 1.5E-32 260.6 14.7 112 167-288 45-159 (680)
31 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-27 7.8E-32 260.2 20.0 132 146-288 22-162 (844)
32 3oja_B Anopheles plasmodium-re 99.9 2.6E-28 8.8E-33 257.6 11.7 283 204-509 50-335 (597)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-27 6.6E-32 249.5 17.6 330 173-527 33-476 (562)
34 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-28 1.4E-32 260.8 10.7 175 171-360 25-204 (680)
35 2z63_A TOLL-like receptor 4, v 99.9 1.4E-27 4.8E-32 251.4 13.7 112 167-288 72-191 (570)
36 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-27 1.8E-31 238.5 13.9 286 202-528 39-343 (457)
37 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-27 5.3E-32 230.7 7.0 249 205-489 50-305 (313)
38 4fcg_A Uncharacterized protein 99.9 4.8E-26 1.6E-30 221.5 14.1 232 204-485 80-311 (328)
39 1xku_A Decorin; proteoglycan, 99.9 4.2E-26 1.4E-30 222.8 12.7 283 206-507 32-328 (330)
40 1xku_A Decorin; proteoglycan, 99.9 7.8E-26 2.7E-30 220.9 14.0 292 227-537 30-329 (330)
41 4g8a_A TOLL-like receptor 4; l 99.9 2E-25 6.9E-30 238.0 17.8 122 167-300 72-197 (635)
42 2ft3_A Biglycan; proteoglycan, 99.9 3.7E-26 1.3E-30 223.4 10.9 263 205-508 54-330 (332)
43 1jl5_A Outer protein YOPM; leu 99.9 3.1E-25 1.1E-29 225.2 16.8 311 148-523 91-421 (454)
44 2ft3_A Biglycan; proteoglycan, 99.9 6.4E-26 2.2E-30 221.6 8.8 288 205-536 33-329 (332)
45 4fcg_A Uncharacterized protein 99.9 3.8E-25 1.3E-29 215.1 13.0 230 227-507 80-310 (328)
46 1ogq_A PGIP-2, polygalacturona 99.9 5.8E-26 2E-30 219.6 7.1 248 171-465 50-305 (313)
47 1jl5_A Outer protein YOPM; leu 99.9 2.4E-24 8.2E-29 218.7 16.0 290 170-523 90-382 (454)
48 4g8a_A TOLL-like receptor 4; l 99.9 1E-24 3.5E-29 232.6 12.1 323 172-507 53-576 (635)
49 2z80_A TOLL-like receptor 2, v 99.9 4.1E-23 1.4E-27 203.5 17.1 253 170-463 51-313 (353)
50 2z80_A TOLL-like receptor 2, v 99.9 8.5E-24 2.9E-28 208.4 11.7 249 205-509 52-312 (353)
51 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-23 1.3E-27 216.3 15.2 265 206-521 41-305 (622)
52 2z66_A Variable lymphocyte rec 99.9 8.7E-24 3E-28 204.0 8.9 226 205-462 28-259 (306)
53 2z66_A Variable lymphocyte rec 99.9 6.4E-24 2.2E-28 205.0 6.3 247 207-488 9-261 (306)
54 1ozn_A Reticulon 4 receptor; N 99.9 6.9E-24 2.3E-28 202.5 6.2 131 205-337 32-166 (285)
55 1z7x_W Ribonuclease inhibitor; 99.9 4.8E-26 1.6E-30 233.2 -11.4 333 168-509 25-409 (461)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-22 4E-27 194.0 10.4 265 208-508 14-284 (285)
57 3zyj_A Leucine-rich repeat-con 99.9 1.7E-22 5.9E-27 205.2 11.0 223 205-462 64-290 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 1.9E-22 6.6E-27 205.5 11.1 223 205-462 75-301 (452)
59 3zyi_A Leucine-rich repeat-con 99.9 3.5E-22 1.2E-26 203.6 12.5 246 206-488 55-303 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 4.3E-22 1.5E-26 202.2 11.8 246 206-488 44-292 (440)
61 1z7x_W Ribonuclease inhibitor; 99.9 9E-25 3.1E-29 223.7 -8.7 330 168-509 53-438 (461)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1E-21 3.5E-26 205.5 14.1 242 205-493 61-303 (622)
63 3o53_A Protein LRIM1, AGAP0063 99.9 8.8E-23 3E-27 197.8 5.6 101 402-507 169-271 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-23 1.1E-27 200.9 1.3 241 204-489 33-276 (317)
65 1wwl_A Monocyte differentiatio 99.9 3.1E-23 1.1E-27 200.5 0.5 126 205-336 43-185 (312)
66 1wwl_A Monocyte differentiatio 99.9 2.3E-23 7.9E-28 201.4 -0.9 250 223-508 38-306 (312)
67 3oja_A Leucine-rich immune mol 99.8 8.7E-22 3E-26 201.9 8.8 80 204-288 33-113 (487)
68 3oja_A Leucine-rich immune mol 99.8 2.1E-22 7.3E-27 206.4 4.0 238 170-485 33-272 (487)
69 3ogk_B Coronatine-insensitive 99.8 5.2E-22 1.8E-26 209.8 2.4 298 204-509 191-524 (592)
70 2z62_A TOLL-like receptor 4, v 99.8 1.9E-20 6.5E-25 177.7 11.3 203 205-440 28-238 (276)
71 3ogk_B Coronatine-insensitive 99.8 5.8E-21 2E-25 201.8 7.8 325 168-507 189-547 (592)
72 2o6q_A Variable lymphocyte rec 99.8 9.2E-20 3.2E-24 172.3 13.5 127 207-337 18-146 (270)
73 1h6u_A Internalin H; cell adhe 99.8 8.5E-20 2.9E-24 175.8 11.4 193 204-441 40-232 (308)
74 3rfs_A Internalin B, repeat mo 99.8 1.1E-20 3.7E-25 178.8 4.9 89 402-498 157-246 (272)
75 2ast_B S-phase kinase-associat 99.8 5.3E-21 1.8E-25 187.1 1.5 254 207-496 49-315 (336)
76 2o6q_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 168.7 13.1 200 228-462 16-216 (270)
77 3rfs_A Internalin B, repeat mo 99.8 6.5E-20 2.2E-24 173.4 8.3 206 204-475 40-246 (272)
78 4ay9_X Follicle-stimulating ho 99.8 5.9E-19 2E-23 173.3 13.7 238 208-484 12-255 (350)
79 1p9a_G Platelet glycoprotein I 99.8 2.6E-19 8.9E-24 170.6 10.7 148 204-360 9-157 (290)
80 2xwt_C Thyrotropin receptor; s 99.8 1.7E-19 5.9E-24 167.2 8.5 204 217-462 23-237 (239)
81 2p1m_B Transport inhibitor res 99.8 2.2E-21 7.4E-26 205.2 -7.9 299 204-510 155-518 (594)
82 2z62_A TOLL-like receptor 4, v 99.8 5.3E-19 1.8E-23 167.7 8.1 222 209-462 11-235 (276)
83 1h6u_A Internalin H; cell adhe 99.8 1.6E-18 5.5E-23 166.8 10.9 205 210-462 24-228 (308)
84 2xwt_C Thyrotropin receptor; s 99.8 9.7E-19 3.3E-23 162.1 8.8 215 233-509 16-237 (239)
85 2ast_B S-phase kinase-associat 99.8 8.3E-20 2.8E-24 178.6 1.0 203 205-436 70-282 (336)
86 1p9a_G Platelet glycoprotein I 99.7 1E-18 3.6E-23 166.5 7.9 202 223-463 5-207 (290)
87 2ca6_A RAN GTPase-activating p 99.7 4.1E-20 1.4E-24 184.3 -2.5 84 204-287 31-135 (386)
88 2p1m_B Transport inhibitor res 99.7 3.3E-20 1.1E-24 196.0 -5.0 295 204-507 210-540 (594)
89 2ca6_A RAN GTPase-activating p 99.7 7.5E-20 2.6E-24 182.4 -2.8 156 204-360 59-253 (386)
90 4glp_A Monocyte differentiatio 99.7 1.3E-17 4.5E-22 160.8 10.6 201 229-462 92-305 (310)
91 3goz_A Leucine-rich repeat-con 99.7 6.2E-19 2.1E-23 174.0 0.9 235 204-462 21-295 (362)
92 4ay9_X Follicle-stimulating ho 99.7 4.5E-17 1.5E-21 159.8 12.4 237 174-460 12-255 (350)
93 3m19_A Variable lymphocyte rec 99.7 6.1E-17 2.1E-21 151.1 11.6 104 205-312 14-119 (251)
94 4glp_A Monocyte differentiatio 99.7 3.3E-17 1.1E-21 158.0 8.0 200 274-507 91-303 (310)
95 3goz_A Leucine-rich repeat-con 99.7 1.5E-18 5.2E-23 171.2 -1.6 256 210-489 3-298 (362)
96 3m19_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 148.1 11.2 152 171-337 14-168 (251)
97 1h6t_A Internalin B; cell adhe 99.7 1.1E-16 3.7E-21 152.6 9.6 167 169-361 44-210 (291)
98 1m9s_A Internalin B; cell inva 99.7 5E-17 1.7E-21 169.8 6.8 192 205-441 21-212 (605)
99 3cvr_A Invasion plasmid antige 99.7 1.4E-16 4.8E-21 164.6 9.7 190 205-444 59-248 (571)
100 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.6E-21 150.9 9.9 144 203-360 44-187 (291)
101 4ezg_A Putative uncharacterize 99.7 5.6E-17 1.9E-21 145.3 5.6 147 204-360 43-190 (197)
102 2a5y_B CED-4; apoptosis; HET: 99.6 1.2E-16 4.1E-21 166.0 5.3 99 22-129 361-472 (549)
103 2o6s_A Variable lymphocyte rec 99.6 2E-16 6.8E-21 143.1 5.9 124 209-336 11-136 (208)
104 1m9s_A Internalin B; cell inva 99.6 8.6E-16 2.9E-20 160.5 9.8 170 168-363 40-209 (605)
105 2o6s_A Variable lymphocyte rec 99.6 2.3E-15 7.8E-20 136.1 9.9 150 205-367 28-180 (208)
106 1xeu_A Internalin C; cellular 99.6 5.1E-16 1.7E-20 145.6 5.1 142 204-360 18-159 (263)
107 2v9t_B SLIT homolog 2 protein 99.6 1.6E-15 5.3E-20 138.2 7.8 130 205-336 32-164 (220)
108 3cvr_A Invasion plasmid antige 99.6 1.4E-15 4.7E-20 157.2 7.6 189 172-427 60-255 (571)
109 1xeu_A Internalin C; cellular 99.6 1E-15 3.5E-20 143.5 6.0 144 204-362 40-183 (263)
110 4ezg_A Putative uncharacterize 99.6 2.3E-15 7.9E-20 134.7 7.6 130 223-361 39-169 (197)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 4.3E-15 1.5E-19 135.3 9.2 148 175-337 15-166 (220)
112 2v9t_B SLIT homolog 2 protein 99.6 5.3E-15 1.8E-19 134.7 9.5 146 208-360 14-161 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 1.7E-15 5.7E-20 138.0 5.6 150 207-364 13-165 (220)
114 3e6j_A Variable lymphocyte rec 99.5 6.7E-15 2.3E-19 135.0 8.5 148 174-337 22-172 (229)
115 2ell_A Acidic leucine-rich nuc 99.5 1.2E-14 4.1E-19 126.5 8.3 130 204-335 23-158 (168)
116 4b8c_D Glucose-repressible alc 99.5 1.2E-15 4.2E-20 163.3 2.2 114 204-320 223-336 (727)
117 3e6j_A Variable lymphocyte rec 99.5 2E-14 6.9E-19 131.7 10.0 132 170-313 39-172 (229)
118 2xot_A Amphoterin-induced prot 99.5 1.3E-14 4.3E-19 142.9 7.7 127 207-337 20-149 (361)
119 1dce_A Protein (RAB geranylger 99.5 5E-17 1.7E-21 168.8 -10.6 123 301-458 442-567 (567)
120 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.8E-19 124.0 5.2 126 204-331 16-147 (149)
121 2xot_A Amphoterin-induced prot 99.5 2.3E-14 7.8E-19 141.1 8.1 129 207-337 41-176 (361)
122 1a9n_A U2A', U2A'; complex (nu 99.5 5.6E-14 1.9E-18 123.2 8.9 133 199-337 13-153 (176)
123 1w8a_A SLIT protein; signaling 99.5 3.9E-14 1.3E-18 126.0 7.2 126 208-337 11-139 (192)
124 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 122.8 8.6 124 209-336 14-138 (193)
125 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4E-18 148.1 8.2 149 167-334 220-369 (727)
126 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.3E-18 118.5 7.6 130 170-313 23-160 (168)
127 2je0_A Acidic leucine-rich nuc 99.4 7.9E-14 2.7E-18 118.6 4.1 131 226-359 15-148 (149)
128 1ds9_A Outer arm dynein; leuci 99.4 1.8E-14 6.3E-19 128.9 -0.7 147 206-357 24-180 (198)
129 1w8a_A SLIT protein; signaling 99.4 8.9E-13 3E-17 117.2 9.3 126 174-314 11-140 (192)
130 1a9n_A U2A', U2A'; complex (nu 99.4 5.7E-13 2E-17 116.7 7.9 131 168-313 16-153 (176)
131 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.8E-17 115.3 10.7 106 205-312 31-138 (193)
132 1dce_A Protein (RAB geranylger 99.4 7.3E-13 2.5E-17 137.5 8.8 152 202-358 406-567 (567)
133 3sb4_A Hypothetical leucine ri 99.4 1.6E-13 5.3E-18 133.4 2.8 286 170-505 24-328 (329)
134 2o6r_A Variable lymphocyte rec 99.3 3.4E-12 1.2E-16 111.9 9.7 127 208-338 10-138 (177)
135 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 6E-16 107.3 10.7 109 204-314 27-138 (177)
136 1ds9_A Outer arm dynein; leuci 99.3 7.3E-14 2.5E-18 125.0 -5.1 128 204-337 47-185 (198)
137 2r9u_A Variable lymphocyte rec 99.2 2.4E-11 8.1E-16 105.9 8.9 100 208-311 15-116 (174)
138 3g39_A Variable lymphocyte rec 99.2 2.4E-11 8.4E-16 105.4 8.8 103 206-312 10-114 (170)
139 1vt4_I APAF-1 related killer D 99.2 6.2E-12 2.1E-16 133.9 5.5 94 8-122 343-437 (1221)
140 3sb4_A Hypothetical leucine ri 99.2 1.3E-10 4.3E-15 112.7 13.4 261 170-481 48-327 (329)
141 3sfz_A APAF-1, apoptotic pepti 99.2 1.9E-11 6.6E-16 140.2 8.4 103 10-128 336-452 (1249)
142 2r9u_A Variable lymphocyte rec 99.1 1.1E-10 3.7E-15 101.7 9.4 102 174-288 15-119 (174)
143 3g39_A Variable lymphocyte rec 99.1 8.8E-11 3E-15 101.9 7.6 119 229-351 10-132 (170)
144 4fdw_A Leucine rich hypothetic 99.0 2.4E-09 8.3E-14 106.1 14.4 216 206-461 136-355 (401)
145 4fdw_A Leucine rich hypothetic 98.9 9.6E-09 3.3E-13 101.8 13.4 170 172-360 136-309 (401)
146 2ifg_A High affinity nerve gro 98.9 3E-09 1E-13 103.9 8.5 99 210-312 13-115 (347)
147 1z6t_A APAF-1, apoptotic prote 98.9 2.6E-09 8.9E-14 112.3 8.5 100 10-125 336-449 (591)
148 4fs7_A Uncharacterized protein 98.9 4E-08 1.4E-12 97.6 16.0 321 168-530 68-394 (394)
149 3un9_A NLR family member X1; l 98.8 4.2E-10 1.4E-14 110.5 0.9 163 170-337 71-252 (372)
150 2ifg_A High affinity nerve gro 98.8 7.2E-09 2.5E-13 101.1 6.3 104 231-338 11-117 (347)
151 3un9_A NLR family member X1; l 98.7 5.2E-10 1.8E-14 109.8 -3.6 160 204-364 71-251 (372)
152 2ra8_A Uncharacterized protein 98.6 1.9E-08 6.4E-13 97.9 3.7 108 402-509 193-318 (362)
153 4fs7_A Uncharacterized protein 98.5 1.6E-07 5.5E-12 93.2 8.9 297 203-529 69-371 (394)
154 2ra8_A Uncharacterized protein 98.4 1E-07 3.5E-12 92.7 4.0 155 204-360 138-316 (362)
155 3e4g_A ATP synthase subunit S, 98.2 2.1E-07 7E-12 79.5 1.0 88 402-510 61-151 (176)
156 4gt6_A Cell surface protein; l 98.2 1.6E-05 5.5E-10 78.7 14.7 117 401-529 264-383 (394)
157 3e4g_A ATP synthase subunit S, 98.2 3.5E-07 1.2E-11 78.1 1.4 87 378-466 60-154 (176)
158 1io0_A Tropomodulin; LRR prote 98.0 1.9E-06 6.6E-11 75.3 3.4 84 204-287 35-136 (185)
159 3rw6_A Nuclear RNA export fact 98.0 4.1E-07 1.4E-11 83.8 -1.3 62 226-288 168-234 (267)
160 3rw6_A Nuclear RNA export fact 98.0 4.3E-06 1.5E-10 77.0 5.1 78 203-281 168-258 (267)
161 1io0_A Tropomodulin; LRR prote 98.0 2.2E-06 7.7E-11 74.9 2.4 67 222-288 30-107 (185)
162 4gt6_A Cell surface protein; l 97.9 5E-05 1.7E-09 75.1 11.1 128 346-484 260-387 (394)
163 4h09_A Hypothetical leucine ri 97.6 0.00068 2.3E-08 66.5 13.7 54 204-260 68-122 (379)
164 4h09_A Hypothetical leucine ri 97.3 0.0033 1.1E-07 61.5 13.8 101 167-283 65-167 (379)
165 3rfe_A Platelet glycoprotein I 96.0 0.011 3.7E-07 47.7 5.9 52 209-262 12-66 (130)
166 3rfe_A Platelet glycoprotein I 95.7 0.016 5.3E-07 46.8 5.5 55 231-287 11-68 (130)
167 1pgv_A TMD-1, tropomodulin TMD 95.1 0.012 4.2E-07 51.0 3.1 38 250-287 69-111 (197)
168 1pgv_A TMD-1, tropomodulin TMD 93.8 0.022 7.5E-07 49.3 2.0 81 204-284 40-136 (197)
169 1w5s_A Origin recognition comp 40.3 33 0.0011 32.9 5.5 72 26-101 297-372 (412)
170 1hqc_A RUVB; extended AAA-ATPa 39.6 7 0.00024 36.4 0.4 71 28-99 238-324 (324)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2e-32 Score=297.37 Aligned_cols=249 Identities=24% Similarity=0.250 Sum_probs=121.2
Q ss_pred cCceeEEEeccCCCC-CCChhhhhhhhhhhccccCCceeeEEEcCCCCCC-CCchh-hccccccceeecCCCCCC-ccCc
Q 009315 170 LERLHSYLSFDNRKG-DKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKP-VLPET-IGKLRLLRHVGLRWTFLD-SIPK 245 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~lp~~-~~~l~~L~~L~l~~~~i~-~lp~ 245 (537)
+++|+.|.+.++... .+|.. +.+ +++|++|++++|.+. .+|.. ++++++|++|++++|.+. .+|.
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~-~~~----------l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPF-FGS----------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGG-GGG----------CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred cCcCCEEECcCCcCCCccchH-Hhc----------CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 467777766655433 33322 332 556666666655543 55543 556666666666666553 5555
Q ss_pred ccCCCC-CCcEEeecCCccc-cCCccccc--cccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhh
Q 009315 246 SLGDLP-SLETLDVKRTNIA-TLPKSIWK--SSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLR 321 (537)
Q Consensus 246 ~l~~l~-~L~~L~L~~~~l~-~lp~~i~~--l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~ 321 (537)
.+.++. +|++|++++|.++ .+|..+.. +++|++|++++|.+.+ .+|..++.+++|+.|++..|...+..|..++
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 555554 5555555555544 34444443 4455555555555544 3444455555555555555544444444555
Q ss_pred cCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecC--CcCCcccc
Q 009315 322 NSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLP--RAIDINDQ 399 (537)
Q Consensus 322 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~--~~~~~~~~ 399 (537)
.+++|+.|++++|.+.+ .+|..+..+++|+.|++++ +.+.+..+. .+..+++|+.+++.++.- ..+.++..
T Consensus 440 ~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~-N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEG---EIPQELMYVKTLETLILDF-NDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp GCTTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCS-SCCCSCCCG---GGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCCCCCEEECCCCcccC---cCCHHHcCCCCceEEEecC-CcccCcCCH---HHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 55555555555555443 3344444555555555554 233322221 122334445554443210 11112222
Q ss_pred CCCCeeEEEEecccCCCCchhhhhcCCCccEEEecccccc
Q 009315 400 LPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYI 439 (537)
Q Consensus 400 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 439 (537)
+ ++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.
T Consensus 513 l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 513 L-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp C-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred C-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 2 45555555555554444555555555555555555444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.3e-32 Score=296.79 Aligned_cols=246 Identities=24% Similarity=0.195 Sum_probs=119.6
Q ss_pred ceeeEEEcCCCCCC-CCchhhccccccceeecCCCCCC-ccCcc-cCCCCCCcEEeecCCccc-cCCccccccc-cccEE
Q 009315 205 RLLRVLDLERVYKP-VLPETIGKLRLLRHVGLRWTFLD-SIPKS-LGDLPSLETLDVKRTNIA-TLPKSIWKSS-TLRHL 279 (537)
Q Consensus 205 ~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~-l~~l~~L~~L~L~~~~l~-~lp~~i~~l~-~L~~L 279 (537)
++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|++|++++|.++ .+|..+.+++ +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 45555555555443 34555555555555555555543 45543 555555555555555554 5555555554 55555
Q ss_pred eccccccccccCCCccCCc--cccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEE
Q 009315 280 YMSDIRFQLSAQKPFVNSS--LTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLM 357 (537)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~--l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 357 (537)
++++|.+.+ ..+..+.. +++|++|++..|...+.+|..++.+++|+.|++++|.+.+ .+|..+..+++|+.|+
T Consensus 374 ~Ls~N~l~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 374 DLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLK 448 (768)
T ss_dssp ECCSSEEEE--ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES---CCCGGGGGCTTCCEEE
T ss_pred EccCCCcCC--CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC---cccHHHhcCCCCCEEE
Confidence 555555544 23333333 4555555555555444445555555555555555555443 3444455555555555
Q ss_pred EEeeCCCCCCCccccCCCCCCCCcceEEEeeecCC--cCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecc
Q 009315 358 LRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPR--AIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFA 435 (537)
Q Consensus 358 l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 435 (537)
+++ +.+.+..+. .+..+++|+.+++.++.-. .+..+..+ ++|+.|++++|.+.+.+|.+++.+++|++|+|++
T Consensus 449 L~~-n~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 449 LWL-NMLEGEIPQ---ELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCS-SCCCSCCCG---GGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCC-CcccCcCCH---HHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 555 233322221 1223345555555442110 11112222 4555555555555555555555555555555555
Q ss_pred ccccCceeeecCCCCccccEEEeccC
Q 009315 436 HSYIGEQMTCQKGWFPQLLVLKLWVL 461 (537)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (537)
|.+.+..|.. +..+++|+.|++++|
T Consensus 524 N~l~~~~p~~-l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 524 NSFSGNIPAE-LGDCRSLIWLDLNTN 548 (768)
T ss_dssp SCCEEECCGG-GGGCTTCCEEECCSS
T ss_pred CcccCcCCHH-HcCCCCCCEEECCCC
Confidence 5554443332 344444444444433
No 3
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=267.85 Aligned_cols=316 Identities=16% Similarity=0.119 Sum_probs=173.0
Q ss_pred CceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcccCC
Q 009315 171 ERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKSLGD 249 (537)
Q Consensus 171 ~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~l~~ 249 (537)
++++.|.+.++....+++..|.+ +++|++|++++|.+..+ |..++++++|++|++++|.+..+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS----------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT----------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred ccccEEECCCCcccccChhhccc----------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--c
Confidence 56777777666666666554444 57777777777777666 56777777777777777777777765 6
Q ss_pred CCCCcEEeecCCcccc--CCccccccccccEEeccccccccccCCCccCCccccc--cccceEEecC--CCCchH-----
Q 009315 250 LPSLETLDVKRTNIAT--LPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKL--QTLWGLLIGK--KSRPLN----- 318 (537)
Q Consensus 250 l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L--~~L~~~~~~~--~~~~~~----- 318 (537)
+++|++|++++|.++. +|..++++++|++|++++|.+.. ..++.+++| +.|++..|.. ....|.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeeccccccccccccccccc
Confidence 7777777777777764 45677777777777777776554 223444444 5555555444 222222
Q ss_pred ---------------------------------------------------HhhcCccCcEEeEEEecccccH-HHHHHH
Q 009315 319 ---------------------------------------------------WLRNSKDLRKLGLTFHFESLQD-QEITKW 346 (537)
Q Consensus 319 ---------------------------------------------------~l~~l~~L~~L~l~~~~~~~~~-~~~~~~ 346 (537)
.++.+++|+.|+++.+.+.+.. ..++..
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 3344455555555554443210 011111
Q ss_pred hccCCCcceEEEEeeCCCCCCCcccc-----CC---------------------------------------------CC
Q 009315 347 IKDLEHLESLMLRSVNDFLEPSDLDF-----GN---------------------------------------------LS 376 (537)
Q Consensus 347 l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~---------------------------------------------l~ 376 (537)
+ ..++|+.|++++|. +.+..+..+ .. ..
T Consensus 244 ~-~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 244 V-WHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp H-HTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred h-hhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 1 13456666666533 221111111 00 03
Q ss_pred CCCCcceEEEeeecCCc--CCccccCCCCeeEEEEecccCCC--CchhhhhcCCCccEEEeccccccCceeeecCCCCcc
Q 009315 377 KHKKLTELYLIGKLPRA--IDINDQLPEKLTVFTLSLSHLSK--DPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQ 452 (537)
Q Consensus 377 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 452 (537)
.+++|+.++++++.-.. +..+..+ ++|+.|++++|.+.+ ..|..++.+++|++|++++|.+.+..+...+..+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 44556666665432111 2222333 566666666666654 334556666666666666666655333333455566
Q ss_pred ccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecC
Q 009315 453 LLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDM 508 (537)
Q Consensus 453 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c 508 (537)
|+.|++++|......+... .++|+.|++++|....+|..+..+++|++|++++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECcCCCCCcchhhhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 6666666654322222111 14666666666655456666666666666666663
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.1e-31 Score=282.82 Aligned_cols=314 Identities=16% Similarity=0.113 Sum_probs=238.5
Q ss_pred ccCCceeeEEEcCCCCCCC------------------Cchhhc--cccccceeecCCCCC-CccCcccCCCCCCcEEeec
Q 009315 201 KRGYRLLRVLDLERVYKPV------------------LPETIG--KLRLLRHVGLRWTFL-DSIPKSLGDLPSLETLDVK 259 (537)
Q Consensus 201 ~~~~~~L~~L~L~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~i-~~lp~~l~~l~~L~~L~L~ 259 (537)
++++++|++|+|++|.+.. +|..++ ++++|++|++++|.+ +.+|..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5678999999999998888 999999 999999999999976 7899999999999999999
Q ss_pred CCc-cc--cCCcccccc------ccccEEeccccccccccCCCc--cCCccccccccceEEecCCCCchHHhhcCccCcE
Q 009315 260 RTN-IA--TLPKSIWKS------STLRHLYMSDIRFQLSAQKPF--VNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRK 328 (537)
Q Consensus 260 ~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 328 (537)
+|+ ++ .+|..++++ ++|++|++++|.+.. +|. .++.+++|++|++..|...+.+| .++.+++|+.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~---ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS---CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc---cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 998 88 499988887 999999999999885 677 89999999999999998876777 8899999999
Q ss_pred EeEEEecccccHHHHHHHhccCCC-cceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeec-----CCcCCcc----c
Q 009315 329 LGLTFHFESLQDQEITKWIKDLEH-LESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKL-----PRAIDIN----D 398 (537)
Q Consensus 329 L~l~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~-----~~~~~~~----~ 398 (537)
|++++|.+. .+|..+..+++ |+.|++++ +.++.. +..+. ...+++|+.++++++. |..+... .
T Consensus 358 L~L~~N~l~----~lp~~l~~l~~~L~~L~Ls~-N~l~~l-p~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 358 LNLAYNQIT----EIPANFCGFTEQVENLSFAH-NKLKYI-PNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EECCSSEEE----ECCTTSEEECTTCCEEECCS-SCCSSC-CSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred EECCCCccc----cccHhhhhhcccCcEEEccC-CcCccc-chhhh-hcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 999999887 56777889998 99999998 445432 22121 1124578888887642 2222200 0
Q ss_pred cCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCC-------CCccccEEEeccCCCCceeEeCC
Q 009315 399 QLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKG-------WFPQLLVLKLWVLKELKRWSIEK 471 (537)
Q Consensus 399 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~~ 471 (537)
.. ++|+.|++++|.+....+..+..+++|+.|++++|.+.. .+...+. .+++|+.|++++|. +..++...
T Consensus 431 ~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 507 (636)
T 4eco_A 431 KG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDF 507 (636)
T ss_dssp CC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGG
T ss_pred cC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCc-CCccChhh
Confidence 22 588899999988885444456668888888888888873 3322122 22378888888874 44666555
Q ss_pred C--cccccccccccccccCCCccccCCCCCCCEEEEecCc----hHHHHHHHhhccCccceEE
Q 009315 472 E--TMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDME----KSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 472 ~--~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~----n~~~~~~~~~~~~~~~l~~ 528 (537)
. .+++|+.|++++|....+|..+.++++|+.|++++|+ |.+.+.+|..+.++++|+.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 4 7788888888888776677777788888888886532 4455666766666665543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.5e-30 Score=276.03 Aligned_cols=333 Identities=19% Similarity=0.053 Sum_probs=212.0
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccC-
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIP- 244 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp- 244 (537)
...+++|++|.+.++....+++..|.+ +++|++|++++|.+..+ |..|+++++|++|++++|.+..+|
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~----------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHG----------LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTT----------CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhc----------hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence 456788888888777666665544443 67888888888877776 677888888888888888887665
Q ss_pred cccCCCCCCcEEeecCCccc--cCCccccccccccEEeccccccccccCCCccCCccc----------------------
Q 009315 245 KSLGDLPSLETLDVKRTNIA--TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLT---------------------- 300 (537)
Q Consensus 245 ~~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~---------------------- 300 (537)
..++++++|++|++++|.++ .+|..++++++|++|++++|.+.+ ..+..++.+.
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT--ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE--ECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee--cChhhhhhhhccccccceeeccCCCcceeCcc
Confidence 56788888888888888776 467788888888888888777655 2222222222
Q ss_pred -----cccccceEEe-----------------------------------------------------------------
Q 009315 301 -----KLQTLWGLLI----------------------------------------------------------------- 310 (537)
Q Consensus 301 -----~L~~L~~~~~----------------------------------------------------------------- 310 (537)
+|+.|++..+
T Consensus 200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence 2222322222
Q ss_pred --------------------------------------cCCCCchHHhhcCccCcEEeEEEe------------------
Q 009315 311 --------------------------------------GKKSRPLNWLRNSKDLRKLGLTFH------------------ 334 (537)
Q Consensus 311 --------------------------------------~~~~~~~~~l~~l~~L~~L~l~~~------------------ 334 (537)
.. ..+| .+ .+++|+.|++++|
T Consensus 280 ~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp SCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred ccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 22 1112 11 2333333333333
Q ss_pred ----cccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeec-CCcC--CccccCCCCeeEE
Q 009315 335 ----FESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKL-PRAI--DINDQLPEKLTVF 407 (537)
Q Consensus 335 ----~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~-~~~~--~~~~~~~~~L~~L 407 (537)
.+.+. ...+..+..+++|+.|++++|. +.... ..+..+++|+.+++.++. .... ..+..+ ++|+.|
T Consensus 357 ls~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L 429 (606)
T 3vq2_A 357 LSRNALSFS-GCCSYSDLGTNSLRHLDLSFNG-AIIMS----ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYL 429 (606)
T ss_dssp CCSSCEEEE-EECCHHHHCCSCCCEEECCSCS-EEEEC----CCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEE
T ss_pred CcCCccCCC-cchhhhhccCCcccEeECCCCc-cccch----hhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEE
Confidence 21110 0012334444555555554422 21111 334556778888776531 1111 122333 788888
Q ss_pred EEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCccccccccccccccc
Q 009315 408 TLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQK 487 (537)
Q Consensus 408 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 487 (537)
++++|.+.+..|..++.+++|++|++++|.+.+..++..++.+++|+.|++++|......+...+.+++|+.|++++|..
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 88888888777888888888999999888887754444478888888888888854444445567788888888888887
Q ss_pred CC-CccccCCCCCCCEEEEecCchHHHHHHHhhccCcc
Q 009315 488 LK-NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTV 524 (537)
Q Consensus 488 l~-lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~ 524 (537)
.. .|..+..+++|+.|++++|. +. .+|..+..++
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~--l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNR--IE-TSKGILQHFP 544 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSC--CC-CEESCGGGSC
T ss_pred CCcCHHHccCCCcCCEEECCCCc--Cc-ccCHhHhhhc
Confidence 77 68888888888888888854 33 4565555544
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.7e-29 Score=252.77 Aligned_cols=307 Identities=17% Similarity=0.136 Sum_probs=256.5
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccC-
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIP- 244 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp- 244 (537)
...+++++.+.+.++..+.+|...+.. +++|++|+++++.+..++ ..++.+++|++|++++|.+..+|
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~----------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDS----------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHH----------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCCceEEEecCCchhhCChhHhcc----------cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 345788999999888888889876666 799999999999988886 48999999999999999998775
Q ss_pred cccCCCCCCcEEeecCCccccCCccc-cccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcC
Q 009315 245 KSLGDLPSLETLDVKRTNIATLPKSI-WKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNS 323 (537)
Q Consensus 245 ~~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l 323 (537)
..++++++|++|++++|.++.+|..+ .++++|++|++++|.+.. ..+..++.+++|++|++..|..... .++.+
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l 185 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHV---DLSLI 185 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCEEECCSSCCSBC---CGGGC
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCEEECCCCcCCcc---ccccc
Confidence 55899999999999999999999874 899999999999999987 6677899999999999998887643 36778
Q ss_pred ccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCC
Q 009315 324 KDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEK 403 (537)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 403 (537)
++|+.|++++|.+.. +...++|+.|++++ +.+..... ...++|+.+++.++.-..+..+..+ ++
T Consensus 186 ~~L~~L~l~~n~l~~--------~~~~~~L~~L~l~~-n~l~~~~~------~~~~~L~~L~l~~n~l~~~~~l~~l-~~ 249 (390)
T 3o6n_A 186 PSLFHANVSYNLLST--------LAIPIAVEELDASH-NSINVVRG------PVNVELTILKLQHNNLTDTAWLLNY-PG 249 (390)
T ss_dssp TTCSEEECCSSCCSE--------EECCSSCSEEECCS-SCCCEEEC------CCCSSCCEEECCSSCCCCCGGGGGC-TT
T ss_pred cccceeecccccccc--------cCCCCcceEEECCC-Ceeeeccc------cccccccEEECCCCCCcccHHHcCC-CC
Confidence 999999999998774 34567899999998 44433211 1247899999988654555555665 89
Q ss_pred eeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCccccccccccc
Q 009315 404 LTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIR 483 (537)
Q Consensus 404 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 483 (537)
|+.|++++|.+.+..|..++.+++|+.|++++|.+.+. +. ....+++|+.|++++| .+..++.....+++|+.|+++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NL-YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-EC-SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECC
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cc-ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECC
Confidence 99999999999887889999999999999999999763 32 3678999999999998 555666666778999999999
Q ss_pred ccccCCCccccCCCCCCCEEEEecCc
Q 009315 484 RCQKLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 484 ~c~~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
+|+...+| +..+++|+.|++++++
T Consensus 327 ~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 327 HNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCccceeC--chhhccCCEEEcCCCC
Confidence 99977776 6788999999999955
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=7.2e-29 Score=255.23 Aligned_cols=294 Identities=17% Similarity=0.083 Sum_probs=198.5
Q ss_pred ceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCccccCCcc-ccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 281 (537)
+.+++|+|++|.+..+ |..|.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4567777777666665 35667777777777777766655 55667777777777777777766653 466777777777
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEee
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSV 361 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 361 (537)
++|.+.. ..+..++.+++|++|++..|......+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++
T Consensus 112 s~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~- 185 (477)
T 2id5_A 112 SENKIVI--LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---IPTEALSHLHGLIVLRLRH- 185 (477)
T ss_dssp TTSCCCE--ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---CCHHHHTTCTTCCEEEEES-
T ss_pred CCCcccc--CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---cChhHhcccCCCcEEeCCC-
Confidence 7776665 455666777777777776666655445566677777777777776664 2334566777777777776
Q ss_pred CCCCCCCccccCCCCCCCCcceEEEeeec--CCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecccccc
Q 009315 362 NDFLEPSDLDFGNLSKHKKLTELYLIGKL--PRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYI 439 (537)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~L~~l~l~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 439 (537)
+.+....+ ..+..+++|+.+++.++. .......... .+|+.|++++|.+....+..++.+++|+.|+|++|.+.
T Consensus 186 n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 186 LNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CCCCEECT---TCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CcCcEeCh---hhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 33333222 234455677777776531 0111111222 58999999999988666678889999999999999886
Q ss_pred CceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCc-cccCCCCCCCEEEEecCc
Q 009315 440 GEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNP-FESTNLTGLKELTLTDME 509 (537)
Q Consensus 440 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp-~~~~~l~~L~~L~l~~c~ 509 (537)
+..+ ..+..+++|+.|++++|......+..+..+++|+.|++++|....+| ..+..+++|+.|++++++
T Consensus 262 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 262 TIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECT-TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccCh-hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 5433 33778899999999988544433456677899999999999877744 456788999999998744
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.2e-29 Score=245.34 Aligned_cols=304 Identities=15% Similarity=0.105 Sum_probs=230.0
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCccc
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSL 247 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l 247 (537)
..+++++++.+.++....+|. +. .+++|++|++++|.+..++. +..+++|++|++++|.+..+| .+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~----------~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IE----------YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL 106 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GG----------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred hhcccccEEEEeCCccccchh--hh----------hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH
Confidence 346778888887776666653 22 37889999999998888877 888999999999999888886 48
Q ss_pred CCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCc
Q 009315 248 GDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLR 327 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 327 (537)
.++++|++|++++|.++.+|. +..+++|++|++++|.... .+..+..+++|++|++..+......+ +..+++|+
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLS---DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCC---CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcc---cccchhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 889999999999999888876 8889999999999986555 23448888999999888877654333 78889999
Q ss_pred EEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEE
Q 009315 328 KLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVF 407 (537)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L 407 (537)
.|++++|.+.. ++. +..+++|+.|++++ +.+.... .+..+++|+.+++.++.-..+..+..+ ++|+.|
T Consensus 181 ~L~l~~n~l~~----~~~-~~~l~~L~~L~l~~-n~l~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L 248 (347)
T 4fmz_A 181 SLSLNYNQIED----ISP-LASLTSLHYFTAYV-NQITDIT-----PVANMTRLNSLKIGNNKITDLSPLANL-SQLTWL 248 (347)
T ss_dssp EEECTTSCCCC----CGG-GGGCTTCCEEECCS-SCCCCCG-----GGGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEE
T ss_pred EEEccCCcccc----ccc-ccCCCccceeeccc-CCCCCCc-----hhhcCCcCCEEEccCCccCCCcchhcC-CCCCEE
Confidence 99999888774 222 77888999999988 4443322 245678888888877643333333444 788999
Q ss_pred EEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCccccccccccccccc
Q 009315 408 TLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQK 487 (537)
Q Consensus 408 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 487 (537)
++++|.+.+. +.+..+++|+.|++++|.+.+. . .+..+++|+.|++++|......+...+.+++|+.|++++|+.
T Consensus 249 ~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 249 EIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred ECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 9998888752 4688888999999988888764 2 267788899999988865444444456788899999999887
Q ss_pred CCCccccCCCCCCCEEEEecCc
Q 009315 488 LKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 488 l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
..++. +..+++|++|++++|+
T Consensus 324 ~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 324 TDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCGG-GGGCTTCSEESSSCC-
T ss_pred ccccC-hhhhhccceeehhhhc
Confidence 66444 7788889999888854
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.6e-30 Score=271.21 Aligned_cols=124 Identities=19% Similarity=0.110 Sum_probs=95.7
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCc
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPK 245 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~ 245 (537)
...+++|++|.+.++....++...|.+ +++|++|++++|.+..+| ..|+.+++|++|++++|.+..+|.
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 117 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQS----------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTT----------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred hhCCCCceEEECCCCcCCccCcccccC----------chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCC
Confidence 566888999988888776666654544 788899999988877775 678888889999998888887765
Q ss_pred -ccCCCCCCcEEeecCCcccc--CCccccccccccEEeccccccccccCCCccCCccccc
Q 009315 246 -SLGDLPSLETLDVKRTNIAT--LPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKL 302 (537)
Q Consensus 246 -~l~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 302 (537)
.++++++|++|++++|.++. +|..++++++|++|++++|.+.. ..+..++.+++|
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L 175 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQM 175 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE--ECGGGGHHHHTC
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce--ecHHHccchhcc
Confidence 58888889999998888874 68888888888888888887765 334444444444
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.7e-29 Score=255.86 Aligned_cols=322 Identities=18% Similarity=0.105 Sum_probs=226.5
Q ss_pred CCCcCceeEEEeccCCCC-CCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCc-c
Q 009315 167 GKHLERLHSYLSFDNRKG-DKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDS-I 243 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~-l 243 (537)
...+++|+.|.+.++... .++...|.. +++|++|++++|.+..+ |..++++++|++|++++|.+.. +
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRG----------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTT----------CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred hccCccccEEECcCCcccceECcccccc----------cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 456777777777665442 444443333 67788888887776665 6677778888888888877753 3
Q ss_pred Ccc--cCCCCCCcEEeecCCccccC-Ccc-ccccccccEEeccccccccccCCCccCCcc--ccccccceEEecCCCCch
Q 009315 244 PKS--LGDLPSLETLDVKRTNIATL-PKS-IWKSSTLRHLYMSDIRFQLSAQKPFVNSSL--TKLQTLWGLLIGKKSRPL 317 (537)
Q Consensus 244 p~~--l~~l~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~~~~~~~~~~~~ 317 (537)
|.. ++++++|++|++++|.++.+ |.. +.++++|++|++++|.+.+ ..+..+..+ .+|+.|++..+......+
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS--ICEEDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC--CCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc--cChhhhhccccccccccccccCcccccch
Confidence 433 77778888888888877755 444 6777888888888877766 455556555 566777766665543222
Q ss_pred HH--------hhcCccCcEEeEEEecccccHHHHHHHhcc---CCCcceEEEEeeCCCCCC---------CccccCCCCC
Q 009315 318 NW--------LRNSKDLRKLGLTFHFESLQDQEITKWIKD---LEHLESLMLRSVNDFLEP---------SDLDFGNLSK 377 (537)
Q Consensus 318 ~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~~~---------~~~~~~~l~~ 377 (537)
.. +..+++|+.|++++|.+.+ ..+..+.. .++|+.|+++++...... ....+..+ .
T Consensus 198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 273 (455)
T 3v47_A 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKE---SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL-E 273 (455)
T ss_dssp TCTTHHHHCCTTTTCEEEEEECTTSCCCH---HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG-T
T ss_pred hhccccccccccccceeeeEecCCCcccc---cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccc-c
Confidence 11 2356789999999998876 55555544 378999999874322211 11111111 2
Q ss_pred CCCcceEEEeee-----cCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCcc
Q 009315 378 HKKLTELYLIGK-----LPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQ 452 (537)
Q Consensus 378 ~~~L~~l~l~~~-----~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 452 (537)
.++|+.++++++ .|..+ ..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+. .+..+++
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~---~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 348 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVF---SHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR-MFENLDK 348 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTT---TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GGTTCTT
T ss_pred ccCceEEEecCccccccchhhc---ccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh-HhcCccc
Confidence 368999998764 23333 333 8999999999999987888999999999999999999664343 3789999
Q ss_pred ccEEEeccCCCCceeEeCCCcccccccccccccccCCCcc-ccCCCCCCCEEEEecCc
Q 009315 453 LLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPF-ESTNLTGLKELTLTDME 509 (537)
Q Consensus 453 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~-~~~~l~~L~~L~l~~c~ 509 (537)
|++|++++|......+.....+++|++|++++|....+|. .+..+++|+.|++++++
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 9999999995544345667889999999999998877554 56899999999999854
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3e-29 Score=266.10 Aligned_cols=341 Identities=19% Similarity=0.060 Sum_probs=224.3
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCcc-Cccc
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSI-PKSL 247 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~l 247 (537)
.++++.+.+.++....++...|.+ +++|++|++++|.+..+ |..|+++++|++|++++|.+..+ |..+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSN----------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CCCcCEEECCCCCcCEeChhhccC----------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 367899999888877777654544 89999999999988887 66899999999999999999877 8889
Q ss_pred CCCCCCcEEeecCCccccCC-ccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcC---
Q 009315 248 GDLPSLETLDVKRTNIATLP-KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNS--- 323 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l--- 323 (537)
+++++|++|++++|.++.+| ..++++++|++|++++|.+.. ..+|..++++++|++|++.+|......+..++.+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC-CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc-eechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 99999999999999999776 679999999999999999875 3468899999999999998887654333322222
Q ss_pred ------------------------ccCcEEeEEEecccccHHHHHHHhccCC----------------------------
Q 009315 324 ------------------------KDLRKLGLTFHFESLQDQEITKWIKDLE---------------------------- 351 (537)
Q Consensus 324 ------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~l~---------------------------- 351 (537)
.+|+.|++++|.+.+. ..+..+.+++
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN--IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH--HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred ccccceeeccCCCcceeCcccccCceeeeeeccCCccchh--HHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence 2566666666654421 3333332222
Q ss_pred --------------------------------------------------CcceEEEEeeCCCCCCCccc----------
Q 009315 352 --------------------------------------------------HLESLMLRSVNDFLEPSDLD---------- 371 (537)
Q Consensus 352 --------------------------------------------------~L~~L~l~~~~~~~~~~~~~---------- 371 (537)
+|+.|++++|.. +......
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~ 336 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLT 336 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEE
T ss_pred hhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeecc
Confidence 333333333211 1100000
Q ss_pred ------cCCCCCCCCcceEEEeeec-------CCc--------------------CCccccCCCCeeEEEEecccCCCCc
Q 009315 372 ------FGNLSKHKKLTELYLIGKL-------PRA--------------------IDINDQLPEKLTVFTLSLSHLSKDP 418 (537)
Q Consensus 372 ------~~~l~~~~~L~~l~l~~~~-------~~~--------------------~~~~~~~~~~L~~L~L~~~~~~~~~ 418 (537)
...+..+++|+.++++++. +.. +..+..+ ++|+.|++++|.+.+..
T Consensus 337 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l-~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL-EELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTC-TTCCEEECTTSEEESTT
T ss_pred CCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCC-CCCCeeECCCCccCCcc
Confidence 0011122333433332210 000 0111122 45555555555555444
Q ss_pred h-hhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCce-eEeCCCcccccccccccccccCC-CccccC
Q 009315 419 M-PVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKR-WSIEKETMPKLRELEIRRCQKLK-NPFEST 495 (537)
Q Consensus 419 ~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~c~~l~-lp~~~~ 495 (537)
+ ..++.+++|+.|++++|.+.+..+.. +..+++|++|++++|..... ++...+.+++|+.|++++|.... .|..+.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 4 45666666666666666665543333 66677777777777744432 45556778888888888887777 677788
Q ss_pred CCCCCCEEEEecCchHHHHHHHhhccCccceEE
Q 009315 496 NLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 496 ~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~ 528 (537)
.+++|++|++++| .+.+..|..+.++++++.
T Consensus 495 ~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 495 TLHRLQLLNMSHN--NLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECCSS--CCSCEEGGGTTTCTTCCE
T ss_pred ccccCCEEECCCC--cCCCcCHHHccCCCcCCE
Confidence 8888888888884 455555777777666554
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=7e-29 Score=261.92 Aligned_cols=306 Identities=17% Similarity=0.133 Sum_probs=256.5
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCc-
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPK- 245 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~- 245 (537)
..+++++.+.+.++..+.+|...+.. +++|++|++++|.+..++ ..|+.+++|++|++++|.+..+|.
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDS----------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHH----------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHcc----------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 35678899999888888899887766 799999999999988875 489999999999999999987765
Q ss_pred ccCCCCCCcEEeecCCccccCCccc-cccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCc
Q 009315 246 SLGDLPSLETLDVKRTNIATLPKSI-WKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSK 324 (537)
Q Consensus 246 ~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 324 (537)
.++++++|++|++++|.++.+|..+ +++++|++|++++|.+.+ ..+..++.+++|++|++.+|..... .++.++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~ 192 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 192 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBC---CGGGCT
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCCCCCCc---Chhhhh
Confidence 4799999999999999999988874 899999999999999988 6777899999999999998877643 267789
Q ss_pred cCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCe
Q 009315 325 DLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKL 404 (537)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 404 (537)
+|+.|++++|.+.+ +...++|+.|++++ +.+...... ..++|+.|++.++.-..+.++..+ ++|
T Consensus 193 ~L~~L~l~~n~l~~--------l~~~~~L~~L~ls~-n~l~~~~~~------~~~~L~~L~L~~n~l~~~~~l~~l-~~L 256 (597)
T 3oja_B 193 SLFHANVSYNLLST--------LAIPIAVEELDASH-NSINVVRGP------VNVELTILKLQHNNLTDTAWLLNY-PGL 256 (597)
T ss_dssp TCSEEECCSSCCSE--------EECCTTCSEEECCS-SCCCEEECS------CCSCCCEEECCSSCCCCCGGGGGC-TTC
T ss_pred hhhhhhcccCcccc--------ccCCchhheeeccC-Ccccccccc------cCCCCCEEECCCCCCCCChhhccC-CCC
Confidence 99999999998774 45567899999998 444322211 136899999988754555555666 899
Q ss_pred eEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccc
Q 009315 405 TVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRR 484 (537)
Q Consensus 405 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 484 (537)
+.|++++|.+.+..|..++.+++|+.|+|++|.+.+. +. ....+++|+.|++++|. +..++...+.+++|+.|++++
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NL-YGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-EC-SSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCS
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cc-ccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCC
Confidence 9999999999988899999999999999999999763 33 36779999999999984 556666667899999999999
Q ss_pred cccCCCccccCCCCCCCEEEEecCc
Q 009315 485 CQKLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 485 c~~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
|....+| +..+++|+.|++++++
T Consensus 334 N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 334 NSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCcC--hhhcCCCCEEEeeCCC
Confidence 9987765 6778999999999965
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.1e-30 Score=278.60 Aligned_cols=292 Identities=16% Similarity=0.099 Sum_probs=153.7
Q ss_pred CCceeeEEEcCCCC-CCCCchhhccccccceeecCCCC-CC--ccCcccCCCC-------CCcEEeecCCccccCCc--c
Q 009315 203 GYRLLRVLDLERVY-KPVLPETIGKLRLLRHVGLRWTF-LD--SIPKSLGDLP-------SLETLDVKRTNIATLPK--S 269 (537)
Q Consensus 203 ~~~~L~~L~L~~~~-~~~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~l~~l~-------~L~~L~L~~~~l~~lp~--~ 269 (537)
++++|++|+|++|. .+.+|..++++++|++|++++|. +. .+|..++++. +|++|++++|.++.+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 36666666666553 45566666666666666666665 54 3555444333 66666666666666666 6
Q ss_pred ccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCcc-CcEEeEEEecccccHHHHHHHhc
Q 009315 270 IWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKD-LRKLGLTFHFESLQDQEITKWIK 348 (537)
Q Consensus 270 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~ 348 (537)
++++++|++|++++|.+.. +| .++.+++|+.|++..|... .+|..+..+++ |+.|++++|.+. .+|..+.
T Consensus 569 l~~L~~L~~L~Ls~N~l~~---lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~----~lp~~~~ 639 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRH---LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK----YIPNIFN 639 (876)
T ss_dssp HTTCTTCCEEECTTSCCCB---CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC----SCCSCCC
T ss_pred hhcCCCCCEEECCCCCccc---ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC----cCchhhh
Confidence 6666666666666666553 34 5666666666666666655 55555666666 666666666655 3344444
Q ss_pred cCC--CcceEEEEeeCCCCCCCccccCCC--------------------------CCCCCcceEEEeeec-CCcCCcccc
Q 009315 349 DLE--HLESLMLRSVNDFLEPSDLDFGNL--------------------------SKHKKLTELYLIGKL-PRAIDINDQ 399 (537)
Q Consensus 349 ~l~--~L~~L~l~~~~~~~~~~~~~~~~l--------------------------~~~~~L~~l~l~~~~-~~~~~~~~~ 399 (537)
.++ +|+.|++++ |.+.+..+.....+ ..+++|+.|+++++. ...+.....
T Consensus 640 ~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~ 718 (876)
T 4ecn_A 640 AKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718 (876)
T ss_dssp TTCSSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS
T ss_pred ccccCCCCEEECcC-CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhc
Confidence 433 266666665 33332211100011 123445555554421 111111111
Q ss_pred CC-------CCeeEEEEecccCCCCchhhhh--cCCCccEEEeccccccCceeeecCCCCccccEEEecc------CCCC
Q 009315 400 LP-------EKLTVFTLSLSHLSKDPMPVLG--QLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWV------LKEL 464 (537)
Q Consensus 400 ~~-------~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l 464 (537)
.. ++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ .|. .+..+++|+.|++++ |...
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCccccccc
Confidence 10 15555666655555 3444444 55666666666655554 222 244555666665544 2223
Q ss_pred ceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecCc
Q 009315 465 KRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 465 ~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
..+|.....+++|+.|++++|....+|..+. ++|+.|++++|+
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCT
T ss_pred ccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCC
Confidence 3344444555566666666665522555443 456666666543
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.8e-29 Score=260.08 Aligned_cols=331 Identities=17% Similarity=0.155 Sum_probs=204.6
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcccC
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKSLG 248 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~l~ 248 (537)
.++++.|.+.++....+++..|.+ +++|++|++++|.+..+ |..|+++++|++|++++|.+..+|..
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-- 118 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISF----------LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-- 118 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTT----------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--
T ss_pred CCCcCEEECCCCCccccChhhhcc----------CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--
Confidence 378999999888888888765554 78999999999988887 67899999999999999999999987
Q ss_pred CCCCCcEEeecCCccccCC--ccccccccccEEeccccccccccCCCccCCccccc--cccceEEecC--CCCchHHhhc
Q 009315 249 DLPSLETLDVKRTNIATLP--KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKL--QTLWGLLIGK--KSRPLNWLRN 322 (537)
Q Consensus 249 ~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L--~~L~~~~~~~--~~~~~~~l~~ 322 (537)
.+++|++|++++|.++.+| ..++++++|++|++++|.+.. ..++.+++| +.|++..|.. ....|..+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-----CchhhhhhceeeEEEeecccccccccCcccccc
Confidence 8999999999999998654 789999999999999998765 235555555 8888887766 3322322222
Q ss_pred --------------------------CccCcEEeEEE----------------------------eccccc-HHHHHHHh
Q 009315 323 --------------------------SKDLRKLGLTF----------------------------HFESLQ-DQEITKWI 347 (537)
Q Consensus 323 --------------------------l~~L~~L~l~~----------------------------~~~~~~-~~~~~~~l 347 (537)
+++|+.|++++ +.+.+. ...++..+
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 23344444433 333221 01122222
Q ss_pred ccCCCcceEEEEeeCCCCCCCcccc-----CC---------------------------------------------CCC
Q 009315 348 KDLEHLESLMLRSVNDFLEPSDLDF-----GN---------------------------------------------LSK 377 (537)
Q Consensus 348 ~~l~~L~~L~l~~~~~~~~~~~~~~-----~~---------------------------------------------l~~ 377 (537)
..++|++|++++|. +.+..+..+ .. ...
T Consensus 274 -~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 274 -WPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp -TTSSEEEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred -hcccccEEEEeccE-eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 22367777777643 221111111 00 034
Q ss_pred CCCcceEEEeeecCCc--CCccccCCCCeeEEEEecccCCCC--chhhhhcCCCccEEEeccccccCceeeecCCCCccc
Q 009315 378 HKKLTELYLIGKLPRA--IDINDQLPEKLTVFTLSLSHLSKD--PMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQL 453 (537)
Q Consensus 378 ~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 453 (537)
+++|+.++++++.-.. +..+..+ ++|+.|++++|.+.+. .|..++.+++|+.|++++|.+.+..+...+..+++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 4566666665532111 2222333 5667777777666542 234566677777777777766653443335556666
Q ss_pred cEEEeccCCCCceeEeCCCcc-cccccccccccccCCCccccCCCCCCCEEEEecCchHHHHHHHhh-ccCccce
Q 009315 454 LVLKLWVLKELKRWSIEKETM-PKLRELEIRRCQKLKNPFESTNLTGLKELTLTDMEKSFEDEVKQS-LAGTVNV 526 (537)
Q Consensus 454 ~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~-~~~~~~l 526 (537)
+.|++++|......+. .+ ++|+.|++++|....+|..+..+++|++|++++ |.+. .+|.. +..++++
T Consensus 431 ~~L~l~~n~l~~~~~~---~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~--N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFR---CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS--NQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CEEECCSSCCCGGGGS---SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCS--SCCC-CCCTTSTTTCTTC
T ss_pred CEEECCCCCCCcchhh---hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCC--CCCC-CCCHHHHhcCCCC
Confidence 6666666543222211 22 567777777775545666666777777777777 3333 34444 4444443
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.3e-30 Score=276.16 Aligned_cols=314 Identities=15% Similarity=0.104 Sum_probs=241.4
Q ss_pred ccCCceeeEEEcCCCCCCC------------------Cchhhc--cccccceeecCCCCC-CccCcccCCCCCCcEEeec
Q 009315 201 KRGYRLLRVLDLERVYKPV------------------LPETIG--KLRLLRHVGLRWTFL-DSIPKSLGDLPSLETLDVK 259 (537)
Q Consensus 201 ~~~~~~L~~L~L~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~i-~~lp~~l~~l~~L~~L~L~ 259 (537)
++++++|++|+|++|.+.. +|..++ ++++|++|++++|.+ +.+|..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 5678999999999998887 999988 999999999999975 7899999999999999999
Q ss_pred CCc-ccc--CCccccccc-------cccEEeccccccccccCCCc--cCCccccccccceEEecCCCCchHHhhcCccCc
Q 009315 260 RTN-IAT--LPKSIWKSS-------TLRHLYMSDIRFQLSAQKPF--VNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLR 327 (537)
Q Consensus 260 ~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 327 (537)
+|+ ++. +|..+++++ +|++|++++|.+.. +|. .++++++|+.|++..|... .+| .++.+++|+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 998 884 898888777 99999999999886 677 8999999999999999887 777 899999999
Q ss_pred EEeEEEecccccHHHHHHHhccCCC-cceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeec-----CCcCCccccC-
Q 009315 328 KLGLTFHFESLQDQEITKWIKDLEH-LESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKL-----PRAIDINDQL- 400 (537)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~-----~~~~~~~~~~- 400 (537)
.|++++|.+. .+|..+..+++ |+.|++++ |.+... +..+. ....++|+.++++++. |.....+..+
T Consensus 599 ~L~Ls~N~l~----~lp~~l~~l~~~L~~L~Ls~-N~L~~l-p~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 599 DLKLDYNQIE----EIPEDFCAFTDQVEGLGFSH-NKLKYI-PNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp EEECCSSCCS----CCCTTSCEECTTCCEEECCS-SCCCSC-CSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred EEECcCCccc----cchHHHhhccccCCEEECcC-CCCCcC-chhhh-ccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 9999999987 56777899998 99999999 445422 22121 1223458888887642 2222121111
Q ss_pred CCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCC-------CCccccEEEeccCCCCceeEeCCC-
Q 009315 401 PEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKG-------WFPQLLVLKLWVLKELKRWSIEKE- 472 (537)
Q Consensus 401 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~~~- 472 (537)
.++|+.|++++|.+...+...+..+++|+.|+|++|.+.. .+...+. .+++|+.|+|++| .+..++....
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~ 749 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRA 749 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGST
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCC-CCccchHHhhh
Confidence 1489999999999884444444588899999998888863 3332122 2348888888887 4456665554
Q ss_pred -cccccccccccccccCCCccccCCCCCCCEEEEecCc----hHHHHHHHhhccCccceEE
Q 009315 473 -TMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDME----KSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 473 -~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~----n~~~~~~~~~~~~~~~l~~ 528 (537)
.+++|+.|++++|....+|..+.++++|+.|++++|+ |.+.+.+|..+.++++|+.
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence 7888888888888776688788888888888887754 5556667777766666553
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.2e-29 Score=267.16 Aligned_cols=125 Identities=18% Similarity=0.098 Sum_probs=64.7
Q ss_pred CCeeEEEEecccCCCCch-hhhhcCCCccEEEeccccccCcee-eecCCCCccccEEEeccCCCCceeEeCCCccccccc
Q 009315 402 EKLTVFTLSLSHLSKDPM-PVLGQLKELKILRLFAHSYIGEQM-TCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRE 479 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 479 (537)
++|+.|++++|.+.+..+ ..++.+++|++|++++|.+.+... ...+..+++|++|++++|......+.....+++|+.
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 455555555555443222 235555555555555555543321 112455556666666555332222334455666666
Q ss_pred ccccccccCC-Cc-cccCCCCCCCEEEEecCchHHHHHHHhhccCccceEE
Q 009315 480 LEIRRCQKLK-NP-FESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 480 L~l~~c~~l~-lp-~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~ 528 (537)
|++++|.... .| ..+..+++|++|++++|. +.+..|..+..+++++.
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL--LDISSEQLFDGLPALQH 453 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCC--CBTTCTTTTTTCTTCCE
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCc--cCCcCHHHHhCCCCCCE
Confidence 6666666655 33 236666777777777643 33444555555555543
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.9e-30 Score=263.15 Aligned_cols=349 Identities=17% Similarity=0.073 Sum_probs=256.2
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCC-CC-chhhccccccceeecCCCCCCcc-Ccc
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKP-VL-PETIGKLRLLRHVGLRWTFLDSI-PKS 246 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~ 246 (537)
.++++.|.+.++....+++..|. ++++|++|++++|.+. .+ +..+..+++|++|++++|.+..+ |..
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~----------~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFS----------RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTS----------SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CCccCEEEecCCccCcCChhHhc----------cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 36788898888777666544343 3789999999988765 44 56788999999999999988765 778
Q ss_pred cCCCCCCcEEeecCCcccc-CCcc--ccccccccEEeccccccccccCCCcc-CCccccccccceEEecCCCCchHHhhc
Q 009315 247 LGDLPSLETLDVKRTNIAT-LPKS--IWKSSTLRHLYMSDIRFQLSAQKPFV-NSSLTKLQTLWGLLIGKKSRPLNWLRN 322 (537)
Q Consensus 247 l~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~l~~ 322 (537)
++++++|++|++++|.++. +|.. +.++++|++|++++|.+.+ ..|.. ++.+++|++|++..|......+..+..
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS--CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc--cCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 8999999999999998874 4444 8889999999999998887 44544 788999999999888887766666666
Q ss_pred C--ccCcEEeEEEecccccH-----HHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCc--
Q 009315 323 S--KDLRKLGLTFHFESLQD-----QEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRA-- 393 (537)
Q Consensus 323 l--~~L~~L~l~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~-- 393 (537)
+ .+|+.|++++|.+.... ......+..+++|+.|++++ +.+.+..+..+.......+|+.+.+.++....
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCC-CcccccchhhhhccccccceeeEeeccccccccc
Confidence 5 67888888888765310 01112234567899999988 44443333223333334778888876541100
Q ss_pred C-----------CccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCC
Q 009315 394 I-----------DINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 394 ~-----------~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 462 (537)
+ .....-+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+. .+..+++|+.|++++|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEECCCCc
Confidence 0 00000126899999999999988899999999999999999999765443 38899999999999985
Q ss_pred CCceeEeCCCcccccccccccccccCC-CccccCCCCCCCEEEEecCchHHHHHHHhhccCccceEEcCceeeecC
Q 009315 463 ELKRWSIEKETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVIIPPVRVSFN 537 (537)
Q Consensus 463 ~l~~~~~~~~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~lp~~~~~~~ 537 (537)
.....+...+.+++|++|++++|.... .|..+..+++|++|++++ |.+.+..+..+..+++++. +.++.|
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~---L~l~~N 405 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT--NQLKSVPDGIFDRLTSLQK---IWLHTN 405 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCE---EECCSS
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC--CccccCCHhHhccCCcccE---EEccCC
Confidence 433334556789999999999998877 788999999999999999 4455433344566666554 444443
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=5.6e-29 Score=264.01 Aligned_cols=252 Identities=20% Similarity=0.175 Sum_probs=102.7
Q ss_pred cCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchH-HhhcCcc
Q 009315 247 LGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLN-WLRNSKD 325 (537)
Q Consensus 247 l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~-~l~~l~~ 325 (537)
++++++|++|++++|.++.+|..+.++++|++|++++|.+.. ..+..++.+++|++|++.+|.....++. .+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN--LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB--GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc--CchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 444444555555544444444444444445555554444443 2333444444444444444443322221 2444444
Q ss_pred CcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCC-c--CCccccCCC
Q 009315 326 LRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPR-A--IDINDQLPE 402 (537)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-~--~~~~~~~~~ 402 (537)
|+.|++++|.+.... ..+..+..+++|+.|++++| .+....+ ..+..+++|+.+++.++.-. . ...+..+ +
T Consensus 352 L~~L~l~~n~l~~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~ 425 (606)
T 3t6q_A 352 LRELDLSHDDIETSD-CCNLQLRNLSHLQSLNLSYN-EPLSLKT---EAFKECPQLELLDLAFTRLKVKDAQSPFQNL-H 425 (606)
T ss_dssp CCEEECCSSCCCEEE-ESTTTTTTCTTCCEEECCSC-SCEEECT---TTTTTCTTCSEEECTTCCEECCTTCCTTTTC-T
T ss_pred CCEEECCCCcccccc-CcchhcccCCCCCEEECCCC-cCCcCCH---HHhcCCccCCeEECCCCcCCCcccchhhhCc-c
Confidence 444444444443210 00223444444444444442 2211111 12223344444444332100 0 0001112 4
Q ss_pred CeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceee--ecCCCCccccEEEeccCCCCceeEeCCCcccccccc
Q 009315 403 KLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMT--CQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLREL 480 (537)
Q Consensus 403 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 480 (537)
+|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+. ..+..+++|+.|++++|......+...+.+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 444455544444444444444444455555544444332111 113344444444444442222222333444444444
Q ss_pred cccccccCC-CccccCCCCCCCEEEEec
Q 009315 481 EIRRCQKLK-NPFESTNLTGLKELTLTD 507 (537)
Q Consensus 481 ~l~~c~~l~-lp~~~~~l~~L~~L~l~~ 507 (537)
++++|.... .|..+.++++| .|++++
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred ECCCCccCcCChhHhCccccc-EEECcC
Confidence 444444443 44444444444 444444
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.6e-29 Score=264.78 Aligned_cols=313 Identities=16% Similarity=0.123 Sum_probs=253.6
Q ss_pred CcCceeEEEeccCC-CCCCChhhhhhhhhhhccccCCceeeEEEcCCCC-CC--CCchhhccc------cccceeecCCC
Q 009315 169 HLERLHSYLSFDNR-KGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVY-KP--VLPETIGKL------RLLRHVGLRWT 238 (537)
Q Consensus 169 ~~~~Lr~l~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~--~lp~~~~~l------~~L~~L~l~~~ 238 (537)
.+++|+.|.+.++. .+.+|.. +. ++++|++|++++|. +. .+|..++++ ++|++|++++|
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~-l~----------~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTF-LK----------ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTT-TT----------TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred ccCCCCEEEecCCcCCccChHH-Hh----------cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 78899999887664 6667743 33 38999999999886 76 489988887 99999999999
Q ss_pred CCCccCc--ccCCCCCCcEEeecCCccc-cCCccccccccccEEeccccccccccCCCccCCcccc-ccccceEEecCCC
Q 009315 239 FLDSIPK--SLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTK-LQTLWGLLIGKKS 314 (537)
Q Consensus 239 ~i~~lp~--~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~~~~~~~~~ 314 (537)
.+..+|. .++++++|++|++++|.++ .+| .++.+++|++|++++|.+.. +|..++.+++ |++|++..|...
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~---lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE---IPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE---CCTTSEEECTTCCEEECCSSCCS-
T ss_pred cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc---ccHhhhhhcccCcEEEccCCcCc-
Confidence 9999999 8999999999999999999 999 99999999999999999886 7788999999 999999999887
Q ss_pred CchHHhhcCc--cCcEEeEEEecccccHHHHHHHhc-------cCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEE
Q 009315 315 RPLNWLRNSK--DLRKLGLTFHFESLQDQEITKWIK-------DLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELY 385 (537)
Q Consensus 315 ~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~ 385 (537)
.+|..+..++ +|+.|++++|.+.+ ..|..+. .+++|+.|++++ +.++.... ..+..+++|+.|+
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~~~~~~~~~~~L~~L~Ls~-N~l~~lp~---~~~~~l~~L~~L~ 463 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGS---VDGKNFDPLDPTPFKGINVSSINLSN-NQISKFPK---ELFSTGSPLSSIN 463 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTT---TTTCSSCTTCSSCCCCCCEEEEECCS-SCCCSCCT---HHHHTTCCCSEEE
T ss_pred ccchhhhhcccCccCEEECcCCcCCC---cchhhhcccccccccCCCCCEEECcC-CccCcCCH---HHHccCCCCCEEE
Confidence 6777777655 89999999999886 5666666 778999999998 44543222 1233468899999
Q ss_pred EeeecCCcC-CccccCC-------CCeeEEEEecccCCCCchhhhh--cCCCccEEEeccccccCceeeecCCCCccccE
Q 009315 386 LIGKLPRAI-DINDQLP-------EKLTVFTLSLSHLSKDPMPVLG--QLKELKILRLFAHSYIGEQMTCQKGWFPQLLV 455 (537)
Q Consensus 386 l~~~~~~~~-~~~~~~~-------~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 455 (537)
++++.-..+ ....... ++|+.|++++|.+. .+|..+. .+++|+.|+|++|.+.+ .|.. +..+++|+.
T Consensus 464 Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~ 540 (636)
T 4eco_A 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-PLNSSTLKG 540 (636)
T ss_dssp CCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCSSCCE
T ss_pred CCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh-hhcCCCCCE
Confidence 987522221 1111111 28999999999998 6777776 99999999999999987 4443 778999999
Q ss_pred EEecc------CCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecCc
Q 009315 456 LKLWV------LKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 456 L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
|++++ |.....+|...+.+++|++|++++|....+|..+. ++|+.|++++|+
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCT
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCC
Confidence 99954 54556677777889999999999999844998765 899999999975
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.2e-28 Score=247.71 Aligned_cols=318 Identities=19% Similarity=0.142 Sum_probs=221.0
Q ss_pred CCCCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccC
Q 009315 165 ASGKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIP 244 (537)
Q Consensus 165 ~~~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp 244 (537)
+....+++|+.|.+.++....+|. + .++++|++|++++|.+..++. ++++++|++|++++|.+..+|
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~--~----------~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITP--L----------KNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--G----------TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred cchhhhcCCCEEECCCCccCCchh--h----------hccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence 334556777777777666555543 2 236777778887777777765 777777888888777777776
Q ss_pred cccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCc
Q 009315 245 KSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSK 324 (537)
Q Consensus 245 ~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 324 (537)
. +.++++|++|++++|.+..+| .++++++|++|++++ .... . ..++.+++|+.|++..+.... + ..+..++
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~---~-~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~ 199 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTD---L-KPLANLTTLERLDISSNKVSD-I-SVLAKLT 199 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCC---C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred H-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccC---c-hhhccCCCCCEEECcCCcCCC-C-hhhccCC
Confidence 5 777777888888777777665 477777777777753 3332 2 237777888888877776543 2 2477788
Q ss_pred cCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCe
Q 009315 325 DLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKL 404 (537)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 404 (537)
+|+.|++++|.+.+. .+ +..+++|+.|++++ +.+... +.+..+++|+.++++++.-.....+..+ ++|
T Consensus 200 ~L~~L~l~~n~l~~~---~~--~~~l~~L~~L~l~~-n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l-~~L 267 (466)
T 1o6v_A 200 NLESLIATNNQISDI---TP--LGILTNLDELSLNG-NQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGL-TKL 267 (466)
T ss_dssp TCSEEECCSSCCCCC---GG--GGGCTTCCEEECCS-SCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGTTC-TTC
T ss_pred CCCEEEecCCccccc---cc--ccccCCCCEEECCC-CCcccc-----hhhhcCCCCCEEECCCCccccchhhhcC-CCC
Confidence 888888888777642 12 66778888888877 334322 3455678888888877543333333444 788
Q ss_pred eEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccc
Q 009315 405 TVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRR 484 (537)
Q Consensus 405 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 484 (537)
+.|++++|.+.+..+ ++.+++|+.|++++|.+.+..+ +..+++|+.|++++|.... ++. ...+++|+.|++++
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFYN 340 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSC-CGG-GGGCTTCCEEECCS
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCC-chh-hccCccCCEeECCC
Confidence 999999888875433 8888999999999988876432 6778899999999885433 322 56789999999999
Q ss_pred cccCCCccccCCCCCCCEEEEecCchHHHHHHHhhccCccceEE
Q 009315 485 CQKLKNPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 485 c~~l~lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~ 528 (537)
|....++ .+.++++|+.|++++|+ +.+..| +..+++++.
T Consensus 341 n~l~~~~-~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 341 NKVSDVS-SLANLTNINWLSAGHNQ--ISDLTP--LANLTRITQ 379 (466)
T ss_dssp SCCCCCG-GGTTCTTCCEEECCSSC--CCBCGG--GTTCTTCCE
T ss_pred CccCCch-hhccCCCCCEEeCCCCc--cCccch--hhcCCCCCE
Confidence 9766664 67889999999999854 444334 556666553
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=8.2e-29 Score=259.57 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=124.4
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchh-hccccccceeecCCCCCCc--c
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPET-IGKLRLLRHVGLRWTFLDS--I 243 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~--l 243 (537)
...+++|++|.+.++....++++.|.. +++|++|++++|.+..+|.. ++++++|++|++++|.+.. +
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYS----------LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred hhcCCcccEEECCCCCcCccChhhccc----------cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence 567889999998888777766554544 78999999999988888654 8999999999999998874 4
Q ss_pred CcccCCCCCCcEEeecCCc-cccCC-ccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHH-h
Q 009315 244 PKSLGDLPSLETLDVKRTN-IATLP-KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNW-L 320 (537)
Q Consensus 244 p~~l~~l~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~-l 320 (537)
|..++++++|++|++++|. +..+| ..+.++++|++|++++|.+.+ ..|..++.+++|++|++..+... ..+.. +
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~ 192 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSESA-FLLEIFA 192 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--ECTTTTTTCSEEEEEEEECSBST-THHHHHH
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc--cChhhhhccccCceEecccCccc-ccchhhH
Confidence 6778999999999999997 56776 478899999999999999887 67788888888888887776654 33333 3
Q ss_pred hcCccCcEEeEEEeccc
Q 009315 321 RNSKDLRKLGLTFHFES 337 (537)
Q Consensus 321 ~~l~~L~~L~l~~~~~~ 337 (537)
..+++|+.|++++|.+.
T Consensus 193 ~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 193 DILSSVRYLELRDTNLA 209 (549)
T ss_dssp HSTTTBSEEEEESCBCT
T ss_pred hhcccccEEEccCCccc
Confidence 45677777777766654
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.2e-28 Score=254.47 Aligned_cols=329 Identities=14% Similarity=0.015 Sum_probs=224.5
Q ss_pred eEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCcc-CcccCCCC
Q 009315 174 HSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSI-PKSLGDLP 251 (537)
Q Consensus 174 r~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~ 251 (537)
+++.+.++....+|... .++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..+++++
T Consensus 3 ~~l~ls~n~l~~ip~~~-------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-------------SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSC-------------CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred ceEecCCCCcccccccc-------------cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc
Confidence 34555666666677531 267999999999998885 6899999999999999999877 77899999
Q ss_pred CCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccC--cEE
Q 009315 252 SLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDL--RKL 329 (537)
Q Consensus 252 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L--~~L 329 (537)
+|++|++++|+++.+|.. .+++|++|++++|.+.+ ...|..++.+++|++|++.+|.... ..+..+++| +.|
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~-~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSS-CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCcccc-ccchhhhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 999999999999999887 89999999999999876 3467889999999999999988764 356777777 999
Q ss_pred eEEEecc--ccc-----------------------------------------------------HHHHHHHhccCCCcc
Q 009315 330 GLTFHFE--SLQ-----------------------------------------------------DQEITKWIKDLEHLE 354 (537)
Q Consensus 330 ~l~~~~~--~~~-----------------------------------------------------~~~~~~~l~~l~~L~ 354 (537)
++++|.+ .+. .......+..+++|+
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 9999877 220 001111334444455
Q ss_pred eEEEEeeCCCCCCCccccCCCCCCCCcceEEEee-----ecCCcC-----Cc----------------------------
Q 009315 355 SLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIG-----KLPRAI-----DI---------------------------- 396 (537)
Q Consensus 355 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~-----~~~~~~-----~~---------------------------- 396 (537)
.|+++++. +.+.....+......++|+.+++.+ .+|..+ ..
T Consensus 224 ~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 224 NLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTC
T ss_pred hccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccC
Confidence 55554421 1100000000000012344443322 222221 00
Q ss_pred ----------------cccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccC--ceeeecCCCCccccEEEe
Q 009315 397 ----------------NDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIG--EQMTCQKGWFPQLLVLKL 458 (537)
Q Consensus 397 ----------------~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l 458 (537)
....+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+ ..+. .+..+++|+.|++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH-HHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH-HHhhCCCCCEEEC
Confidence 00123778888888888887778888888888888888888875 2222 2677888888888
Q ss_pred ccCCCCceeEeC-CCcccccccccccccccCC-CccccCCCCCCCEEEEecCchHHHHHHHhhccCccceEE
Q 009315 459 WVLKELKRWSIE-KETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 459 ~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~ 528 (537)
++|.....++.. ...+++|+.|++++|.... +|..+. ++|+.|++++|. +. .+|..+..+++++.
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~--l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK--IK-SIPKQVVKLEALQE 448 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC--CC-CCCGGGGGCTTCCE
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc--cc-ccchhhhcCCCCCE
Confidence 887554435433 5667888888888888766 665553 688899998854 33 56666655555443
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.1e-28 Score=243.15 Aligned_cols=295 Identities=18% Similarity=0.110 Sum_probs=241.1
Q ss_pred CCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 203 GYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 203 ~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
.+++|++|+++++.+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++|.++.+| .+.++++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 47889999999999998874 8899999999999999999987 999999999999999999886 68999999999999
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeC
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVN 362 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 362 (537)
+|.+.. .+. +..+++|++|++.+|......+ .+..+++|+.|++++|.+... +. +..+++|+.|++++|
T Consensus 119 ~n~i~~---~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~----~~-~~~l~~L~~L~l~~n- 187 (347)
T 4fmz_A 119 EDNISD---ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV----TP-IANLTDLYSLSLNYN- 187 (347)
T ss_dssp TSCCCC---CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC----GG-GGGCTTCSEEECTTS-
T ss_pred CCcccC---chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc----hh-hccCCCCCEEEccCC-
Confidence 999887 333 8899999999998886654444 489999999999999988752 22 789999999999984
Q ss_pred CCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCce
Q 009315 363 DFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQ 442 (537)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 442 (537)
.+... ..+..+++|+.+++.++.......+..+ ++|+.|++++|.+.+..+ ++.+++|++|++++|.+.+.
T Consensus 188 ~l~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 188 QIEDI-----SPLASLTSLHYFTAYVNQITDITPVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp CCCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred ccccc-----ccccCCCccceeecccCCCCCCchhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 44432 2256678999999988644444334444 899999999999985443 99999999999999998764
Q ss_pred eeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCC-CccccCCCCCCCEEEEecCchHHHHHHHhhcc
Q 009315 443 MTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTLTDMEKSFEDEVKQSLA 521 (537)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~ 521 (537)
. .+..+++|+.|++++| .+..++ ....+++|+.|++++|+... .|..+..+++|+.|++++|+ +.+..| +.
T Consensus 259 -~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~--~~ 330 (347)
T 4fmz_A 259 -N-AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH--ITDIRP--LA 330 (347)
T ss_dssp -G-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS--CCCCGG--GG
T ss_pred -h-hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc--cccccC--hh
Confidence 2 3788999999999998 455443 45678999999999999877 77889999999999999965 433333 55
Q ss_pred CccceEE
Q 009315 522 GTVNVVI 528 (537)
Q Consensus 522 ~~~~l~~ 528 (537)
.+++++.
T Consensus 331 ~l~~L~~ 337 (347)
T 4fmz_A 331 SLSKMDS 337 (347)
T ss_dssp GCTTCSE
T ss_pred hhhccce
Confidence 5555443
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-28 Score=247.07 Aligned_cols=283 Identities=14% Similarity=0.078 Sum_probs=238.9
Q ss_pred CceeeEEEcCCCCCCCCchh-hccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCC-ccccccccccEEe
Q 009315 204 YRLLRVLDLERVYKPVLPET-IGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLP-KSIWKSSTLRHLY 280 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~ 280 (537)
++++++|+++++.++.+|.. +..+++|++|++++|.+..+|. .++++++|++|++++|.++.+| ..++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 68899999999999999865 6899999999999999988864 7899999999999999999765 4589999999999
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+++|.+.. .++..++.+++|++|++.+|......+..++.+++|+.|++++|.+... .+..+++|+.|++++
T Consensus 124 L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 124 LERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSLFHANVSY 195 (390)
T ss_dssp CCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------CGGGCTTCSEEECCS
T ss_pred CCCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------ccccccccceeeccc
Confidence 99999887 4555579999999999999988776677899999999999999998752 267789999999988
Q ss_pred eCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccC
Q 009315 361 VNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIG 440 (537)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 440 (537)
+.++ .+....+|+.+++.++.-..+. ...+++|+.|++++|.+.+. ..++.+++|++|++++|.+.+
T Consensus 196 -n~l~--------~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 196 -NLLS--------TLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp -SCCS--------EEECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred -cccc--------ccCCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 4333 2334568999999875333222 12247999999999999853 589999999999999999987
Q ss_pred ceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecCc
Q 009315 441 EQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
..+.. +..+++|+.|++++| .+..++.....+|+|+.|++++|....+|..+..+++|+.|++++|+
T Consensus 263 ~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 263 IMYHP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EESGG-GTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred cChhH-ccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 54444 889999999999998 66777877788999999999999877788888899999999999965
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.8e-27 Score=243.78 Aligned_cols=301 Identities=23% Similarity=0.169 Sum_probs=245.3
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS 246 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~ 246 (537)
...+++|+.|.+.++....++. + .++++|++|++++|.+..++. +.++++|++|++++|.+..+|.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~----------~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~- 151 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--L----------ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA- 151 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--G----------TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-
T ss_pred hhccccCCEEECCCCccccChh--h----------cCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-
Confidence 5678899999998887766654 3 348999999999999999876 8999999999999999988875
Q ss_pred cCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccC
Q 009315 247 LGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDL 326 (537)
Q Consensus 247 l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 326 (537)
++++++|++|+++ +.+..++. +.++++|++|++++|.+.. + ..+..+++|++|++..+......+ ++.+++|
T Consensus 152 ~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 223 (466)
T 1o6v_A 152 LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD---I-SVLAKLTNLESLIATNNQISDITP--LGILTNL 223 (466)
T ss_dssp GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTC
T ss_pred hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC---C-hhhccCCCCCEEEecCCccccccc--ccccCCC
Confidence 8999999999997 45555543 8899999999999998876 3 348899999999999888765444 7889999
Q ss_pred cEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeE
Q 009315 327 RKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTV 406 (537)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~ 406 (537)
+.|++++|.+.. + ..+..+++|+.|++++ +.+.+.. .+..+++|+.+++.++....+..+..+ ++|+.
T Consensus 224 ~~L~l~~n~l~~----~-~~l~~l~~L~~L~l~~-n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~ 291 (466)
T 1o6v_A 224 DELSLNGNQLKD----I-GTLASLTNLTDLDLAN-NQISNLA-----PLSGLTKLTELKLGANQISNISPLAGL-TALTN 291 (466)
T ss_dssp CEEECCSSCCCC----C-GGGGGCTTCSEEECCS-SCCCCCG-----GGTTCTTCSEEECCSSCCCCCGGGTTC-TTCSE
T ss_pred CEEECCCCCccc----c-hhhhcCCCCCEEECCC-Cccccch-----hhhcCCCCCEEECCCCccCccccccCC-CccCe
Confidence 999999998874 2 3578899999999998 4444332 256678999999988643433334454 89999
Q ss_pred EEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccc
Q 009315 407 FTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQ 486 (537)
Q Consensus 407 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 486 (537)
|++++|.+.+..+ ++.+++|+.|++++|.+.+..+ +..+++|+.|++++|. +..+ .....+++|+.|++++|+
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNK-VSDV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSSC
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCc-cCCc-hhhccCCCCCEEeCCCCc
Confidence 9999999986443 8999999999999999987544 6789999999999984 4444 356789999999999998
Q ss_pred cCCCccccCCCCCCCEEEEecCc
Q 009315 487 KLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 487 ~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
...++. +..+++|+.|++++|+
T Consensus 365 l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 365 ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCBCGG-GTTCTTCCEEECCCEE
T ss_pred cCccch-hhcCCCCCEEeccCCc
Confidence 877433 8899999999999964
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=4.2e-28 Score=266.09 Aligned_cols=317 Identities=16% Similarity=0.077 Sum_probs=178.5
Q ss_pred CcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCC-CCCCC-chhhccccccceeecCCCCCCcc-Cc
Q 009315 169 HLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERV-YKPVL-PETIGKLRLLRHVGLRWTFLDSI-PK 245 (537)
Q Consensus 169 ~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~ 245 (537)
..++++.|.+.++....+++..|. ++++|++|+|++| ....+ |..|+++++|++|+|++|.+..+ |.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~----------~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFP----------FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCS----------SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCcCEEECCCCcCCccChhHCc----------ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 346677777766665555443333 3677888888766 45555 56777788888888887777655 66
Q ss_pred ccCCCCCCcEEeecCCcccc-CCcc--ccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhc
Q 009315 246 SLGDLPSLETLDVKRTNIAT-LPKS--IWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRN 322 (537)
Q Consensus 246 ~l~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~ 322 (537)
.++++++|++|++++|.++. +|.. ++++++|++|++++|.+.+ ..++..++++++|++|++..|......+..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-cccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 77778888888888877763 4544 7777888888888777766 223356777788888877777766655666665
Q ss_pred C--ccCcEEeEEEecccccHHHHHHHhccCCC------cceEEEEeeCCCCCCCccccCCCCCC----------------
Q 009315 323 S--KDLRKLGLTFHFESLQDQEITKWIKDLEH------LESLMLRSVNDFLEPSDLDFGNLSKH---------------- 378 (537)
Q Consensus 323 l--~~L~~L~l~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~l~~~---------------- 378 (537)
+ ++|+.|+++.|.+.+ ..+..+..+.+ |+.|++++ +.+.+..+..+......
T Consensus 171 l~~~~L~~L~L~~n~l~~---~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYS---RVSVDWGKCMNPFRNMVLEILDVSG-NGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHCSSCCCEECCSBSCC---CCCCCCCSSSCTTTTCCBSEEBCSS-CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred ccCCccceEECCCCcccc---ccccchhhcCCccccCceeEEecCC-CcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 5 677777777777654 23333333333 77777776 33332222222211112
Q ss_pred -------------------CCcceEEEeeecCCc--CCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecccc
Q 009315 379 -------------------KKLTELYLIGKLPRA--IDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHS 437 (537)
Q Consensus 379 -------------------~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 437 (537)
.+|+.++++++.... ...+..+ ++|+.|++++|.+.+..+..++.+++|++|+|++|.
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 345555543321000 0111122 455555555555554444455555555555555555
Q ss_pred ccCceeeecCCCCccccEEEeccCCCCceeE-eCCCcccccccccccccccCCCccccCCCCCCCEEEEec
Q 009315 438 YIGEQMTCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTD 507 (537)
Q Consensus 438 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~ 507 (537)
+.+..+.. +..+++|+.|++++|. +..++ ..+..+++|+.|++++|....++. +++|+.|++++
T Consensus 326 l~~~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~ 390 (844)
T 3j0a_A 326 LGELYSSN-FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSG 390 (844)
T ss_dssp CSCCCSCS-CSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEES
T ss_pred CCccCHHH-hcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCC
Confidence 54332222 4555555555555552 22222 223445555555555554433322 45555555555
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.5e-27 Score=249.98 Aligned_cols=322 Identities=19% Similarity=0.140 Sum_probs=230.1
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCcc-c
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPKS-L 247 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-l 247 (537)
.+++++|.+.++....+++..|. ++++|++|++++|.+..++ ..++.+++|++|++++|.+..+|.. +
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~----------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLR----------ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTS----------SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred CCCccEEECcCCccCccChhhhh----------cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 36889998888776666544343 4899999999999988875 6899999999999999999888765 9
Q ss_pred CCCCCCcEEeecCCccc--cCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCcc
Q 009315 248 GDLPSLETLDVKRTNIA--TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKD 325 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~ 325 (537)
+++++|++|++++|.++ ..|..++++++|++|++++|...+ ...+..++.+++|++|++.+|......|..++.+++
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 99999999999999998 457789999999999999998444 144568999999999999999988778889999999
Q ss_pred CcEEeEEEecccccHHHHHHH-hccCCCcceEEEEeeCCCCCCCccccCCCCCCC-------------------------
Q 009315 326 LRKLGLTFHFESLQDQEITKW-IKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHK------------------------- 379 (537)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~------------------------- 379 (537)
|+.|+++.|... .++.. +..+++|+.|++++| .+.+...........+.
T Consensus 174 L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (549)
T 2z81_A 174 IHHLTLHLSESA----FLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248 (549)
T ss_dssp EEEEEEECSBST----THHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred CceEecccCccc----ccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh
Confidence 999999999876 34443 456899999999984 44432100001111122
Q ss_pred ---CcceEEEeee-------------------------------cCCcC-----CccccCCCCeeEEEEecccCCCCchh
Q 009315 380 ---KLTELYLIGK-------------------------------LPRAI-----DINDQLPEKLTVFTLSLSHLSKDPMP 420 (537)
Q Consensus 380 ---~L~~l~l~~~-------------------------------~~~~~-----~~~~~~~~~L~~L~L~~~~~~~~~~~ 420 (537)
+|+.+.+.++ ++... ..+....++|+.|++++|.+. .+|.
T Consensus 249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~ 327 (549)
T 2z81_A 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327 (549)
T ss_dssp GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCH
T ss_pred hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCH
Confidence 2333333221 01000 000011256777888887776 4444
Q ss_pred hh-hcCCCccEEEeccccccCceee--ecCCCCccccEEEeccCCCCceeE---eCCCcccccccccccccccCCCcccc
Q 009315 421 VL-GQLKELKILRLFAHSYIGEQMT--CQKGWFPQLLVLKLWVLKELKRWS---IEKETMPKLRELEIRRCQKLKNPFES 494 (537)
Q Consensus 421 ~l-~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c~~l~lp~~~ 494 (537)
.+ +.+++|++|++++|.+.+..+. ..++.+++|+.|++++|. ++.++ .....+++|+.|++++|....+|..+
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 406 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCChhh
Confidence 44 5788888888888887764431 125677888888888873 33332 22456778888888888665577777
Q ss_pred CCCCCCCEEEEecCc
Q 009315 495 TNLTGLKELTLTDME 509 (537)
Q Consensus 495 ~~l~~L~~L~l~~c~ 509 (537)
..+++|++|++++|.
T Consensus 407 ~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG 421 (549)
T ss_dssp CCCTTCCEEECTTSC
T ss_pred cccccccEEECCCCC
Confidence 777777777777744
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=7.5e-28 Score=247.62 Aligned_cols=298 Identities=19% Similarity=0.088 Sum_probs=243.4
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcc-c
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKS-L 247 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-l 247 (537)
.++++.|.+.++....++...|.+ +++|++|+|++|.+..+ |..|+++++|++|++++|.+..+|.. +
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~----------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFAS----------FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTT----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CCCCcEEECCCCccceECHhHccC----------CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 357888888888777776654544 79999999999988877 78899999999999999999999864 7
Q ss_pred CCCCCCcEEeecCCcccc-CCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccC
Q 009315 248 GDLPSLETLDVKRTNIAT-LPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDL 326 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 326 (537)
.++++|++|++++|.++. .|..+.++++|++|++++|.+.. ..+..++.+++|++|++..|......+..+..+++|
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce--eChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 899999999999999985 46678999999999999999887 667789999999999999998887667789999999
Q ss_pred cEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCC--ccccCCCCe
Q 009315 327 RKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAID--INDQLPEKL 404 (537)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L 404 (537)
+.|++++|.+.. ..+..+..+++|+.|++++|+........ .....+|+.+++.++--..+. .+..+ ++|
T Consensus 179 ~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L 250 (477)
T 2id5_A 179 IVLRLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTMTPN----CLYGLNLTSLSITHCNLTAVPYLAVRHL-VYL 250 (477)
T ss_dssp CEEEEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEECTT----TTTTCCCSEEEEESSCCCSCCHHHHTTC-TTC
T ss_pred cEEeCCCCcCcE---eChhhcccCcccceeeCCCCccccccCcc----cccCccccEEECcCCcccccCHHHhcCc-ccc
Confidence 999999999875 33446888999999999986554432221 223358999999886333332 22334 899
Q ss_pred eEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEe-CCCccccccccccc
Q 009315 405 TVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSI-EKETMPKLRELEIR 483 (537)
Q Consensus 405 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~ 483 (537)
+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+. .+..+++|+.|++++| .+..++. .+..+++|+.|+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence 9999999999877778899999999999999999775444 3788999999999998 4444443 45778999999999
Q ss_pred ccccCC
Q 009315 484 RCQKLK 489 (537)
Q Consensus 484 ~c~~l~ 489 (537)
+|+...
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 998764
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.8e-27 Score=241.86 Aligned_cols=296 Identities=18% Similarity=0.120 Sum_probs=229.2
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCccc
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSL 247 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l 247 (537)
..+++|+.|.+.++....+|. +. .+++|++|++++|.+..+| ++.+++|++|++++|.+..+| +
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~--l~----------~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTG--IE----------KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTT--GG----------GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred hHcCCCCEEEccCCCcccChh--hc----------ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c
Confidence 346778888887776666652 33 3789999999999988886 889999999999999998886 8
Q ss_pred CCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCc
Q 009315 248 GDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLR 327 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 327 (537)
+++++|++|++++|.++.+| ++.+++|++|++++|.+.+ + .++.+++|+.|++..|...+.+ .++.+++|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~---l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE---I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC---C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce---e--ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 89999999999999999886 8899999999999999887 2 3788999999999888554444 478899999
Q ss_pred EEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEE
Q 009315 328 KLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVF 407 (537)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L 407 (537)
.|++++|.+.+ ++ +..+++|+.|++++ +.+++. .+..+++|+.++++++.-..+. +..+ ++|+.|
T Consensus 174 ~L~ls~n~l~~----l~--l~~l~~L~~L~l~~-N~l~~~------~l~~l~~L~~L~Ls~N~l~~ip-~~~l-~~L~~L 238 (457)
T 3bz5_A 174 TLDCSFNKITE----LD--VSQNKLLNRLNCDT-NNITKL------DLNQNIQLTFLDCSSNKLTEID-VTPL-TQLTYF 238 (457)
T ss_dssp EEECCSSCCCC----CC--CTTCTTCCEEECCS-SCCSCC------CCTTCTTCSEEECCSSCCSCCC-CTTC-TTCSEE
T ss_pred EEECCCCccce----ec--cccCCCCCEEECcC-CcCCee------ccccCCCCCEEECcCCcccccC-cccc-CCCCEE
Confidence 99999998884 33 78889999999988 545443 2556789999999875333333 3444 899999
Q ss_pred EEecccCCCCchhhhhcCC-------CccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeC--------CC
Q 009315 408 TLSLSHLSKDPMPVLGQLK-------ELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIE--------KE 472 (537)
Q Consensus 408 ~L~~~~~~~~~~~~l~~l~-------~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~ 472 (537)
++++|.+.+..+..+..+. +|+.|++++|...+..+ .+.+++|+.|++++|..++.++.. ..
T Consensus 239 ~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred EeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 9999999876544443333 44555566666555443 567899999999999888777642 24
Q ss_pred cccccccccccccccCCCccccCCCCCCCEEEEecC
Q 009315 473 TMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDM 508 (537)
Q Consensus 473 ~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c 508 (537)
.+++|+.|++++|....++ +.++++|+.|+++++
T Consensus 316 ~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSS
T ss_pred hcccCCEEECCCCcccccc--cccCCcCcEEECCCC
Confidence 5578888888888766664 888999999999983
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.3e-28 Score=260.65 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccC-
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIP- 244 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp- 244 (537)
...+++|++|.+.++....+++..|.+ +++|++|++++|.+..+|. .|+++++|++|++++|.+..+|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQK----------LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHH----------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhc----------ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence 455777888877776666666555555 6777777777777777765 4777777777777777776665
Q ss_pred cccCCCCCCcEEeecCCcccc-CCccccccccccEEecccccccc
Q 009315 245 KSLGDLPSLETLDVKRTNIAT-LPKSIWKSSTLRHLYMSDIRFQL 288 (537)
Q Consensus 245 ~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~ 288 (537)
..++++++|++|++++|.++. .|..++++++|++|++++|.+.+
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 457777777777777777763 34456667777777777766554
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=260.24 Aligned_cols=132 Identities=23% Similarity=0.180 Sum_probs=91.5
Q ss_pred CCCceeEEEEeecccCCcc-CC-CCCcCceeEEEeccC-CCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-c
Q 009315 146 SDLCVRRLAELLVNRNNSY-AS-GKHLERLHSYLSFDN-RKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-P 221 (537)
Q Consensus 146 ~~~~~~~ls~~~~~~~~~~-~~-~~~~~~Lr~l~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p 221 (537)
.+..++++.+.... .... +. ...+++|+.|.+.++ ..+.++++.|.+ +++|++|+|++|.+..+ |
T Consensus 22 lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~----------L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN----------LPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS----------CTTCCEEECTTCCCCEECT
T ss_pred CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcC----------CCCCCEEECCCCcCcccCH
Confidence 44666766543221 1111 11 567888888888776 445555444443 78888888888877766 7
Q ss_pred hhhccccccceeecCCCCCCc-cCcc--cCCCCCCcEEeecCCccccC--CccccccccccEEecccccccc
Q 009315 222 ETIGKLRLLRHVGLRWTFLDS-IPKS--LGDLPSLETLDVKRTNIATL--PKSIWKSSTLRHLYMSDIRFQL 288 (537)
Q Consensus 222 ~~~~~l~~L~~L~l~~~~i~~-lp~~--l~~l~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~ 288 (537)
..|+++++|++|++++|.+.. +|.. ++++++|++|++++|.++.+ +..++++++|++|++++|.+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 788888888888888888754 5554 78888888888888887744 3467888888888888876654
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.6e-28 Score=257.60 Aligned_cols=283 Identities=14% Similarity=0.076 Sum_probs=241.0
Q ss_pred CceeeEEEcCCCCCCCCchh-hccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCCc-cccccccccEEe
Q 009315 204 YRLLRVLDLERVYKPVLPET-IGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLY 280 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~ 280 (537)
+.++++|+++++.++.+|.. +..+++|++|++++|.+..+|. .++.+++|++|++++|.++.+|. .++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 67899999999999999765 6889999999999999987764 79999999999999999997765 568999999999
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+++|.+.. .++..++.+++|++|++.+|......|..++.+++|+.|++++|.+... .+..+++|+.|++++
T Consensus 130 L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 130 LERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSLFHANVSY 201 (597)
T ss_dssp CCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC------CGGGCTTCSEEECCS
T ss_pred eeCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc------Chhhhhhhhhhhccc
Confidence 99999987 5556679999999999999998877788899999999999999998752 266789999999988
Q ss_pred eCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccC
Q 009315 361 VNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIG 440 (537)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 440 (537)
+.++ .+..+.+|+.++++++....+. ...+++|+.|++++|.+.+ +..++.+++|+.|+|++|.+.+
T Consensus 202 -n~l~--------~l~~~~~L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 202 -NLLS--------TLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp -SCCS--------EEECCTTCSEEECCSSCCCEEE--CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred -Cccc--------cccCCchhheeeccCCcccccc--cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 4433 2334578999999875322222 2234799999999999985 4789999999999999999987
Q ss_pred ceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecCc
Q 009315 441 EQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
..+.. +..+++|+.|++++| .+..++.....+|+|+.|++++|....+|..+..+++|+.|++++|+
T Consensus 269 ~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 269 IMYHP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EESGG-GTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCHHH-hcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 65544 889999999999998 66778877788999999999999887799999999999999999965
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.9e-27 Score=249.51 Aligned_cols=330 Identities=14% Similarity=-0.006 Sum_probs=228.2
Q ss_pred eeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCcc-CcccCCC
Q 009315 173 LHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSI-PKSLGDL 250 (537)
Q Consensus 173 Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l 250 (537)
.+++.+.++....+|... .++|++|++++|.+..++ ..++++++|++|++++|.+..+ |..++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~-------------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-------------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-------------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CcEEEcCCCCCccCCCCC-------------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 356667676667777541 367999999999998886 6899999999999999999877 6779999
Q ss_pred CCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccC--cE
Q 009315 251 PSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDL--RK 328 (537)
Q Consensus 251 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L--~~ 328 (537)
++|++|++++|.++.+|.. .+++|++|++++|.+.. ...|..++++++|++|++..+..... .+..+++| +.
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~ 173 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSC 173 (562)
T ss_dssp TTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred CCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccc-cCchHhhcccCcccEEecCCCccccC---chhhhhhceeeE
Confidence 9999999999999999987 89999999999999887 23457899999999999999887653 34555555 99
Q ss_pred EeEEEecc--ccc---------------------------------------------------HHHHHHHhccCCCcce
Q 009315 329 LGLTFHFE--SLQ---------------------------------------------------DQEITKWIKDLEHLES 355 (537)
Q Consensus 329 L~l~~~~~--~~~---------------------------------------------------~~~~~~~l~~l~~L~~ 355 (537)
|++++|.+ .+. .......+..+++|+.
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99999877 320 0011112233333333
Q ss_pred EEEEeeCCCCCCCccccCCCCCCCCcceEEEeee-----cCCcCC-----------------------------------
Q 009315 356 LMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGK-----LPRAID----------------------------------- 395 (537)
Q Consensus 356 L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~-----~~~~~~----------------------------------- 395 (537)
+++..+. +.+.....+.......+|+.+++.++ +|..+.
T Consensus 254 L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 254 VTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 3333321 10000000000001125555555432 222220
Q ss_pred ------------c--cccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCcee-eecCCCCccccEEEecc
Q 009315 396 ------------I--NDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQM-TCQKGWFPQLLVLKLWV 460 (537)
Q Consensus 396 ------------~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~ 460 (537)
. ....+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+... +..+..+++|+.|++++
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 0 00223789999999999888788888999999999999998876321 22377889999999998
Q ss_pred CCCCceeEe-CCCcccccccccccccccCC-CccccCCCCCCCEEEEecCchHHHHHHHhhccCccceE
Q 009315 461 LKELKRWSI-EKETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVV 527 (537)
Q Consensus 461 ~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~ 527 (537)
|.....++. ....+++|+.|++++|.... .|..+. ++|+.|++++|. +. .+|..+..+++++
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~--l~-~ip~~~~~l~~L~ 476 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR--IM-SIPKDVTHLQALQ 476 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC--CC-CCCTTTTSSCCCS
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc--Cc-ccChhhcCCCCCC
Confidence 865443543 35678899999999998766 665543 689999999953 33 5676666555544
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.2e-28 Score=260.76 Aligned_cols=175 Identities=21% Similarity=0.165 Sum_probs=144.8
Q ss_pred CceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCc-ccC
Q 009315 171 ERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPK-SLG 248 (537)
Q Consensus 171 ~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~l~ 248 (537)
+++++|.+.++....+|...|.+ +++|++|++++|.+..+ |..++++++|++|++++|.+..+|. .++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTR----------YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGG----------GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhC----------CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 67899988888888888766655 78999999999888777 6789999999999999999999987 599
Q ss_pred CCCCCcEEeecCCccccCC-ccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhh--cCcc
Q 009315 249 DLPSLETLDVKRTNIATLP-KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLR--NSKD 325 (537)
Q Consensus 249 ~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~--~l~~ 325 (537)
++++|++|++++|.++.+| ..++++++|++|++++|.+.+ ..+..++.+++|++|++..|......+..+. .+++
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC--CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc--cCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 9999999999999999776 578999999999999999887 6778899999999999999888766666554 4689
Q ss_pred CcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 326 LRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
|+.|++++|.+.+ ..+..+..+++|+.|++.+
T Consensus 173 L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 173 LKKLELSSNQIKE---FSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp ESEEECTTCCCCC---BCTTGGGGSSEECEEECTT
T ss_pred ccEEECCCCcccc---cChhhhhhhhhhhhhhccc
Confidence 9999999888764 3344455555555555543
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=251.41 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=89.8
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCc--c
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDS--I 243 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~--l 243 (537)
...+++|++|.+.++....++.+.|.+ +++|++|++++|.+..++. .++++++|++|++++|.+.. +
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~----------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~l 141 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSG----------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTT----------CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCC
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcC----------ccccccccccccccccCCCccccccccccEEecCCCccceecC
Confidence 456889999999888777776654544 7889999999988888865 68899999999999998864 6
Q ss_pred CcccCCCCCCcEEeecCCccccC-Cccccccccc----cEEecccccccc
Q 009315 244 PKSLGDLPSLETLDVKRTNIATL-PKSIWKSSTL----RHLYMSDIRFQL 288 (537)
Q Consensus 244 p~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L----~~L~l~~~~~~~ 288 (537)
|..++++++|++|++++|.++.+ |..++.+++| ++|++++|.+..
T Consensus 142 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred hhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 88899999999999999988855 4567777777 777777776654
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=5.2e-27 Score=238.49 Aligned_cols=286 Identities=16% Similarity=0.108 Sum_probs=228.3
Q ss_pred cCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEec
Q 009315 202 RGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYM 281 (537)
Q Consensus 202 ~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 281 (537)
+++++|++|+++++.+..+| .++.+++|++|++++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 44789999999999999887 7999999999999999999886 899999999999999999886 889999999999
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEee
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSV 361 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 361 (537)
++|.+.+ ++ ++.+++|++|++..|.... + .++.+++|+.|++++|...+ .+ .+..+++|+.|++++
T Consensus 114 ~~N~l~~---l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~---~~--~~~~l~~L~~L~ls~- 179 (457)
T 3bz5_A 114 DTNKLTK---LD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKIT---KL--DVTPQTQLTTLDCSF- 179 (457)
T ss_dssp CSSCCSC---CC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCC---CC--CCTTCTTCCEEECCS-
T ss_pred CCCcCCe---ec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccc---cc--ccccCCcCCEEECCC-
Confidence 9999887 33 8999999999999888765 3 38899999999999996544 22 377899999999998
Q ss_pred CCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 362 NDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
+.+++. . +..+++|+.+++.++--..+. +..+ ++|+.|++++|++.+ +| ++.+++|+.|++++|.+.+.
T Consensus 180 n~l~~l-----~-l~~l~~L~~L~l~~N~l~~~~-l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 180 NKITEL-----D-VSQNKLLNRLNCDTNNITKLD-LNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SCCCCC-----C-CTTCTTCCEEECCSSCCSCCC-CTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred Ccccee-----c-cccCCCCCEEECcCCcCCeec-cccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 555542 1 556789999999876433332 3455 899999999999986 44 88999999999999999875
Q ss_pred eeeecCCCCccc----------cEEEeccCCCCceeEeCCCcccccccccccccccCC-Cccc--------cCCCCCCCE
Q 009315 442 QMTCQKGWFPQL----------LVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK-NPFE--------STNLTGLKE 502 (537)
Q Consensus 442 ~~~~~~~~~~~L----------~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~-lp~~--------~~~l~~L~~ 502 (537)
. .+.+++| +.|++++|..+..++ .+.+++|+.|++++|+.++ +|.. +.++++|+.
T Consensus 249 ~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 249 D----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp C----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred C----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 3 3445555 455666666666665 4678999999999998777 5542 556688999
Q ss_pred EEEecCchHHHHHHHhhccCccceEE
Q 009315 503 LTLTDMEKSFEDEVKQSLAGTVNVVI 528 (537)
Q Consensus 503 L~l~~c~n~~~~~~~~~~~~~~~l~~ 528 (537)
|++++ |.+.+ + .+.++++++.
T Consensus 323 L~L~~--N~l~~-l--~l~~l~~L~~ 343 (457)
T 3bz5_A 323 LYLNN--TELTE-L--DVSHNTKLKS 343 (457)
T ss_dssp EECTT--CCCSC-C--CCTTCTTCSE
T ss_pred EECCC--Ccccc-c--ccccCCcCcE
Confidence 99988 44444 2 2555665544
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.6e-27 Score=230.68 Aligned_cols=249 Identities=17% Similarity=0.080 Sum_probs=154.3
Q ss_pred ceeeEEEcCCCCCC---CCchhhccccccceeecCC-CCC-CccCcccCCCCCCcEEeecCCccc-cCCccccccccccE
Q 009315 205 RLLRVLDLERVYKP---VLPETIGKLRLLRHVGLRW-TFL-DSIPKSLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRH 278 (537)
Q Consensus 205 ~~L~~L~L~~~~~~---~lp~~~~~l~~L~~L~l~~-~~i-~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~ 278 (537)
..+++|+++++.+. .+|..++++++|++|++++ |.+ +.+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35677777766655 4666777777777777773 555 366666777777777777777776 66666777777777
Q ss_pred EeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCc-cCcEEeEEEecccccHHHHHHHhccCCCcceEE
Q 009315 279 LYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSK-DLRKLGLTFHFESLQDQEITKWIKDLEHLESLM 357 (537)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 357 (537)
|++++|.+.+ ..|..++.+++|++|++..|...+.+|..+..++ +|+.|++++|.+.+ ..|..+..++ |+.|+
T Consensus 130 L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~---~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 130 LDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG---KIPPTFANLN-LAFVD 203 (313)
T ss_dssp EECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---ECCGGGGGCC-CSEEE
T ss_pred EeCCCCccCC--cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---cCChHHhCCc-ccEEE
Confidence 7777777665 4566666677777777666666555666666666 67777777776654 4455555655 77777
Q ss_pred EEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecccc
Q 009315 358 LRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHS 437 (537)
Q Consensus 358 l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 437 (537)
+++ +.+++. .|..+ ..+ ++|+.|++++|.+.+.++ .++.+++|++|++++|.
T Consensus 204 Ls~-N~l~~~----------------------~~~~~---~~l-~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 204 LSR-NMLEGD----------------------ASVLF---GSD-KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CCS-SEEEEC----------------------CGGGC---CTT-SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSC
T ss_pred CcC-CcccCc----------------------CCHHH---hcC-CCCCEEECCCCceeeecC-cccccCCCCEEECcCCc
Confidence 765 222211 11111 112 566666666666654333 35666666666666666
Q ss_pred ccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCC
Q 009315 438 YIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK 489 (537)
Q Consensus 438 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 489 (537)
+.+..+.. +..+++|+.|++++|.....+|.. +.+++|+.|++.+|+.+.
T Consensus 256 l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 256 IYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CEECCCGG-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred ccCcCChH-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 66544443 556666666666666433344433 567777777777777555
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.8e-26 Score=221.53 Aligned_cols=232 Identities=23% Similarity=0.200 Sum_probs=161.0
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
.+.+++|+++++.+..+|..++++++|++|++++|.+..+|..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|...+ .+|..++.. ..+..+..+++|+.|++++|.+. .+|..+.++++|+.|++++ |.
T Consensus 160 n~~~~--~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~-N~ 217 (328)
T 4fcg_A 160 CPELT--ELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR----SLPASIANLQNLKSLKIRN-SP 217 (328)
T ss_dssp ETTCC--CCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC----CCCGGGGGCTTCCEEEEES-SC
T ss_pred CCCcc--ccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC----cchHhhcCCCCCCEEEccC-CC
Confidence 88777 566555431 01122445666666666666655 3455566666666666666 32
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCcee
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQM 443 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 443 (537)
+.+.. ..+ ..+ ++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+.+..+
T Consensus 218 l~~l~-----------------------~~l---~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 218 LSALG-----------------------PAI---HHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCCCC-----------------------GGG---GGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCcCc-----------------------hhh---ccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 22111 111 112 556666666666555556666666666666666666555444
Q ss_pred eecCCCCccccEEEeccCCCCceeEeCCCccccccccccccc
Q 009315 444 TCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRC 485 (537)
Q Consensus 444 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 485 (537)
.. +..+++|+.|++++|+.++.+|...+.+++|+.+.+..+
T Consensus 271 ~~-~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 271 LD-IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TT-GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hh-hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 33 555666666666666666666655556666666655544
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=4.2e-26 Score=222.75 Aligned_cols=283 Identities=15% Similarity=0.077 Sum_probs=134.5
Q ss_pred eeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccC-CccccccccccEEeccc
Q 009315 206 LLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 283 (537)
++++++++++.+..+|..+. ++|++|++++|.+..+|. .++++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 34445555444444444332 344555555555544433 344455555555555554433 44444555555555555
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|.+.. +|..+. ++|++|++..|......+..+..+++|+.|++++|.+... ...+..+..+++|+.|++++ +.
T Consensus 110 n~l~~---l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~-n~ 182 (330)
T 1xku_A 110 NQLKE---LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIAD-TN 182 (330)
T ss_dssp SCCSB---CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-GBCTTGGGGCTTCCEEECCS-SC
T ss_pred CcCCc---cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-CcChhhccCCCCcCEEECCC-Cc
Confidence 54443 222222 4455555544444434444556666666666666555310 01233455666666666666 32
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCc--CCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRA--IDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
++..... + .++|+.+++.++.-.. +..+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+..
T Consensus 183 l~~l~~~----~--~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 254 (330)
T 1xku_A 183 ITTIPQG----L--PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK- 254 (330)
T ss_dssp CCSCCSS----C--CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-
T ss_pred cccCCcc----c--cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-
Confidence 3211110 0 1334444443321010 0111222 566666666666655445556666666666666666552
Q ss_pred eeeecCCCCccccEEEeccCCCCceeEeC-C------CcccccccccccccccCC---CccccCCCCCCCEEEEec
Q 009315 442 QMTCQKGWFPQLLVLKLWVLKELKRWSIE-K------ETMPKLRELEIRRCQKLK---NPFESTNLTGLKELTLTD 507 (537)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~l~~c~~l~---lp~~~~~l~~L~~L~l~~ 507 (537)
.+.. +..+++|++|++++|. ++.++.. + ...++|+.|++.+|+... .|..+..+++++.+++++
T Consensus 255 lp~~-l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 255 VPGG-LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCTT-TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred CChh-hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 2222 5556666666666653 3322211 1 123556666666666543 344555666666666655
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=7.8e-26 Score=220.87 Aligned_cols=292 Identities=17% Similarity=0.106 Sum_probs=224.9
Q ss_pred ccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCcccccccc
Q 009315 227 LRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTL 305 (537)
Q Consensus 227 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 305 (537)
..+|++++++++.+..+|..+. ++|++|++++|+++.+|. .+.++++|++|++++|.+.. ..|..++.+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe--eCHHHhcCCCCCCEE
Confidence 4479999999999999998764 799999999999997776 78999999999999999987 668899999999999
Q ss_pred ceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEE
Q 009315 306 WGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELY 385 (537)
Q Consensus 306 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~ 385 (537)
++..|... .+|..+. ++|+.|++++|.+.. ..+..+..+++|+.|++++ +.+... ......+..+++|+.++
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITK---VRKSVFNGLNQMIVVELGT-NPLKSS-GIENGAFQGMKKLSYIR 177 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCS-SCCCGG-GBCTTGGGGCTTCCEEE
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccc---cCHhHhcCCccccEEECCC-CcCCcc-CcChhhccCCCCcCEEE
Confidence 99988776 4454433 799999999999885 4456788999999999998 444321 11124456679999999
Q ss_pred EeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCc
Q 009315 386 LIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELK 465 (537)
Q Consensus 386 l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 465 (537)
+.++.-..+.. ..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+. .+..+++|++|++++| .+.
T Consensus 178 l~~n~l~~l~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N-~l~ 253 (330)
T 1xku_A 178 IADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNN-KLV 253 (330)
T ss_dssp CCSSCCCSCCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSS-CCS
T ss_pred CCCCccccCCc--cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCC-cCc
Confidence 98753222221 2237999999999999887788999999999999999998764332 3778999999999998 566
Q ss_pred eeEeCCCcccccccccccccccCCCccc-cC------CCCCCCEEEEecCchHHHHHHHhhccCccceEEcCceeeecC
Q 009315 466 RWSIEKETMPKLRELEIRRCQKLKNPFE-ST------NLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVIIPPVRVSFN 537 (537)
Q Consensus 466 ~~~~~~~~~~~L~~L~l~~c~~l~lp~~-~~------~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~lp~~~~~~~ 537 (537)
.++.....+++|+.|++++|+...+|.. +. ..++|+.|++++.|-...+..|..+..+++ +..++++.|
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~---l~~l~L~~N 329 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV---RAAVQLGNY 329 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC---GGGEEC---
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc---eeEEEeccc
Confidence 7777788899999999999998774432 32 347899999999663333333455554444 444555544
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2e-25 Score=238.02 Aligned_cols=122 Identities=20% Similarity=0.091 Sum_probs=79.5
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccCc
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIPK 245 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~ 245 (537)
+..+++|+.|.+.++....+|++.|.+ +++|++|+|++|.+..+|. .|.++++|++|++++|.+..+|.
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~----------L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQS----------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTT----------CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcC----------CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 445667777777666666666554443 6777777777777776653 46777777777777777766654
Q ss_pred -ccCCCCCCcEEeecCCccc--cCCccccccccccEEeccccccccccCCCccCCccc
Q 009315 246 -SLGDLPSLETLDVKRTNIA--TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLT 300 (537)
Q Consensus 246 -~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 300 (537)
.++++++|++|++++|.++ .+|..++.+++|++|++++|.+.+ ..+..++.+.
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~L~ 197 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLH 197 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--ECGGGGHHHH
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc--cccccccchh
Confidence 3677777777777777665 345666777777777777776665 3344443333
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=3.7e-26 Score=223.35 Aligned_cols=263 Identities=16% Similarity=0.066 Sum_probs=152.5
Q ss_pred ceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 205 RLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 34666666666555553 3566666666666666666554 4456666666666666666666665544 566666666
Q ss_pred ccccccccCCCccCCccccccccceEEecCCC--CchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKS--RPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+|.+.. ..+..++.+++|++|++.+|.... ..+..+..+ +|+.|++++|.+.. +|..+. ++|+.|++++
T Consensus 132 ~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~----l~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 132 DNRIRK--VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG----IPKDLP--ETLNELHLDH 202 (332)
T ss_dssp SSCCCC--CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS----CCSSSC--SSCSCCBCCS
T ss_pred CCccCc--cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc----cCcccc--CCCCEEECCC
Confidence 666554 333445555556655555554431 223334444 55555555555442 222111 3455555544
Q ss_pred eCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccC
Q 009315 361 VNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIG 440 (537)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 440 (537)
+.++... +. .+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+..
T Consensus 203 -n~i~~~~----------------------~~---~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 203 -NKIQAIE----------------------LE---DLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp -SCCCCCC----------------------TT---SSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred -CcCCccC----------------------HH---HhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 2222111 11 11223 677888888888776666677888888888888887763
Q ss_pred ceeeecCCCCccccEEEeccCCCCceeEeC-C------CcccccccccccccccCC---CccccCCCCCCCEEEEecC
Q 009315 441 EQMTCQKGWFPQLLVLKLWVLKELKRWSIE-K------ETMPKLRELEIRRCQKLK---NPFESTNLTGLKELTLTDM 508 (537)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~l~~c~~l~---lp~~~~~l~~L~~L~l~~c 508 (537)
.+.. +..+++|+.|++++|. ++.++.. + ..+++|+.|++.+|+... .|..+..+++|+.++++++
T Consensus 256 -lp~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 256 -VPAG-LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -CCTT-GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred -cChh-hhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 3332 6677888888888774 3333311 1 125678888888888763 5667888888998888874
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.1e-25 Score=225.22 Aligned_cols=311 Identities=18% Similarity=0.178 Sum_probs=212.7
Q ss_pred CceeEEEEeecccCCccCC-CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhcc
Q 009315 148 LCVRRLAELLVNRNNSYAS-GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGK 226 (537)
Q Consensus 148 ~~~~~ls~~~~~~~~~~~~-~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~ 226 (537)
..++.+.+ ..+.+.+ ....++|+.|.+.++....+|.. .++|++|++++|.+..+| .+++
T Consensus 91 ~~L~~L~l----~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~--------------~~~L~~L~L~~n~l~~lp-~~~~ 151 (454)
T 1jl5_A 91 PHLESLVA----SCNSLTELPELPQSLKSLLVDNNNLKALSDL--------------PPLLEYLGVSNNQLEKLP-ELQN 151 (454)
T ss_dssp TTCSEEEC----CSSCCSSCCCCCTTCCEEECCSSCCSCCCSC--------------CTTCCEEECCSSCCSSCC-CCTT
T ss_pred CCCCEEEc----cCCcCCccccccCCCcEEECCCCccCcccCC--------------CCCCCEEECcCCCCCCCc-ccCC
Confidence 44555532 2334444 23357888888877766655531 367999999999888888 5899
Q ss_pred ccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccc
Q 009315 227 LRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLW 306 (537)
Q Consensus 227 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 306 (537)
+++|++|++++|.+..+|..+ .+|++|++++|.++.+| .++++++|++|++++|.+.+ +|... ++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~---l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK---LPDLP---LSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS---CCCCC---TTCCEEE
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc---CCCCc---CcccEEE
Confidence 999999999999998888754 58999999999999888 68899999999999998876 44332 5889999
Q ss_pred eEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEE
Q 009315 307 GLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYL 386 (537)
Q Consensus 307 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l 386 (537)
+.+|... .+| .++.+++|+.|++++|.+.+ +|. ..++|+.|++++ +.+++... .+++|+.+++
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~----l~~---~~~~L~~L~l~~-N~l~~l~~-------~~~~L~~L~l 284 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKT----LPD---LPPSLEALNVRD-NYLTDLPE-------LPQSLTFLDV 284 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS----CCS---CCTTCCEEECCS-SCCSCCCC-------CCTTCCEEEC
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc----ccc---cccccCEEECCC-CcccccCc-------ccCcCCEEEC
Confidence 9888776 566 48889999999999988773 332 247899999988 44543221 1378889998
Q ss_pred eeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcC-CCccEEEeccccccCceeeecCCCCccccEEEeccCCCCc
Q 009315 387 IGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQL-KELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELK 465 (537)
Q Consensus 387 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 465 (537)
+++....+ ...|++|+.|++++|.+.+ +..+ ++|+.|++++|.+.+ .+. .+++|+.|++++| .++
T Consensus 285 s~N~l~~l---~~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~N-~l~ 350 (454)
T 1jl5_A 285 SENIFSGL---SELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPA----LPPRLERLIASFN-HLA 350 (454)
T ss_dssp CSSCCSEE---SCCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSS-CCS
T ss_pred cCCccCcc---cCcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-ccc----cCCcCCEEECCCC-ccc
Confidence 87643322 2345789999999998864 2234 589999999999876 232 2689999999988 455
Q ss_pred eeEeCCCcccccccccccccccCC---CccccCCC-------------CCCCEEEEecCchHHHH--HHHhhccCc
Q 009315 466 RWSIEKETMPKLRELEIRRCQKLK---NPFESTNL-------------TGLKELTLTDMEKSFED--EVKQSLAGT 523 (537)
Q Consensus 466 ~~~~~~~~~~~L~~L~l~~c~~l~---lp~~~~~l-------------~~L~~L~l~~c~n~~~~--~~~~~~~~~ 523 (537)
.++. .+++|+.|++++|+... +|..+.++ ++|+.|++++ |.+.+ .+|.++..+
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~--N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET--NPLREFPDIPESVEDL 421 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC--CcCCccccchhhHhhe
Confidence 5554 57899999999998876 66777766 8899999999 55655 777766543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=6.4e-26 Score=221.63 Aligned_cols=288 Identities=14% Similarity=0.095 Sum_probs=217.6
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccC-CccccccccccEEecc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMS 282 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~ 282 (537)
.++++++++++.+..+|..+. ++|++|++++|.+..+| ..+.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 478999999999999998764 68999999999998885 5799999999999999999965 7789999999999999
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeC
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVN 362 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 362 (537)
+|.+.. +|..+. ++|++|++..|......+..+..+++|+.|++++|.+... ...+..+..+ +|+.|++++ +
T Consensus 111 ~n~l~~---l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l-~L~~L~l~~-n 182 (332)
T 2ft3_A 111 KNHLVE---IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-GFEPGAFDGL-KLNYLRISE-A 182 (332)
T ss_dssp SSCCCS---CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-GSCTTSSCSC-CCSCCBCCS-S
T ss_pred CCcCCc---cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-CCCcccccCC-ccCEEECcC-C
Confidence 998876 454444 7888888888877655555677888888888888776421 0223334444 677777766 2
Q ss_pred CCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCce
Q 009315 363 DFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQ 442 (537)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 442 (537)
.++. +|.. ++++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..
T Consensus 183 ~l~~-----------------------l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 183 KLTG-----------------------IPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp BCSS-----------------------CCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCc-----------------------cCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 2221 1111 1368999999999999888889999999999999999998754
Q ss_pred eeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCcc-ccCC------CCCCCEEEEecCchHHHHH
Q 009315 443 MTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPF-ESTN------LTGLKELTLTDMEKSFEDE 515 (537)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~-~~~~------l~~L~~L~l~~c~n~~~~~ 515 (537)
+.. +..+++|+.|++++| .+..++.....+++|+.|++++|+...+|. .+.. .++|+.|++++++....+.
T Consensus 234 ~~~-~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 234 NGS-LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp TTG-GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred hhH-hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 433 788999999999998 566777777889999999999998877443 3332 4789999999977443344
Q ss_pred HHhhccCccceEEcCceeeec
Q 009315 516 VKQSLAGTVNVVIIPPVRVSF 536 (537)
Q Consensus 516 ~~~~~~~~~~l~~lp~~~~~~ 536 (537)
.|..+..++++ ..+.++.
T Consensus 312 ~~~~~~~l~~L---~~l~l~~ 329 (332)
T 2ft3_A 312 QPATFRCVTDR---LAIQFGN 329 (332)
T ss_dssp CGGGGTTBCCS---TTEEC--
T ss_pred Ccccccccchh---hhhhccc
Confidence 55666655554 3445544
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.8e-25 Score=215.15 Aligned_cols=230 Identities=20% Similarity=0.192 Sum_probs=191.2
Q ss_pred ccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccc
Q 009315 227 LRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLW 306 (537)
Q Consensus 227 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 306 (537)
..+++.|++++|.+..+|..++++++|++|++++|.++.+|..++++++|++|++++|.+.. +|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA---LPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC---CCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc---CcHHHhcCcCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999998875 577777788888888
Q ss_pred eEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEE
Q 009315 307 GLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYL 386 (537)
Q Consensus 307 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l 386 (537)
+.+|...+.+|..+.. . .++..+..+++|+.|++++| .++.
T Consensus 157 L~~n~~~~~~p~~~~~-----------~-------~~~~~~~~l~~L~~L~L~~n-~l~~-------------------- 197 (328)
T 4fcg_A 157 IRACPELTELPEPLAS-----------T-------DASGEHQGLVNLQSLRLEWT-GIRS-------------------- 197 (328)
T ss_dssp EEEETTCCCCCSCSEE-----------E-------C-CCCEEESTTCCEEEEEEE-CCCC--------------------
T ss_pred CCCCCCccccChhHhh-----------c-------cchhhhccCCCCCEEECcCC-CcCc--------------------
Confidence 7777665555543322 1 11122567899999999984 3321
Q ss_pred eeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCce
Q 009315 387 IGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKR 466 (537)
Q Consensus 387 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 466 (537)
+|..+ ..+ ++|+.|++++|.+.+ +|..++.+++|++|++++|.+.+..+.. ++.+++|+.|++++|.....
T Consensus 198 ---lp~~l---~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 198 ---LPASI---ANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ---CCGGG---GGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCB
T ss_pred ---chHhh---cCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhh
Confidence 11222 233 799999999999985 6668999999999999999998877665 88999999999999999998
Q ss_pred eEeCCCcccccccccccccccCC-CccccCCCCCCCEEEEec
Q 009315 467 WSIEKETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTLTD 507 (537)
Q Consensus 467 ~~~~~~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l~~ 507 (537)
++...+.+++|+.|++++|+..+ +|..+.++++|+.+++..
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 88888899999999999999999 999999999999999876
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5.8e-26 Score=219.64 Aligned_cols=248 Identities=18% Similarity=0.116 Sum_probs=207.8
Q ss_pred CceeEEEeccCCCC---CCChhhhhhhhhhhccccCCceeeEEEcCC-CC-CCCCchhhccccccceeecCCCCCC-ccC
Q 009315 171 ERLHSYLSFDNRKG---DKPAAEVGNLLNRTISKRGYRLLRVLDLER-VY-KPVLPETIGKLRLLRHVGLRWTFLD-SIP 244 (537)
Q Consensus 171 ~~Lr~l~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~-~~~lp~~~~~l~~L~~L~l~~~~i~-~lp 244 (537)
.+++.+.+.++... .+|.. +. ++++|++|++++ +. .+.+|..++++++|++|++++|.+. .+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~----------~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LA----------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GG----------GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChh-Hh----------CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 46777766665544 45543 33 379999999993 54 4578999999999999999999996 889
Q ss_pred cccCCCCCCcEEeecCCccc-cCCccccccccccEEeccccccccccCCCccCCccc-cccccceEEecCCCCchHHhhc
Q 009315 245 KSLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLT-KLQTLWGLLIGKKSRPLNWLRN 322 (537)
Q Consensus 245 ~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L~~L~~~~~~~~~~~~~~l~~ 322 (537)
..++++++|++|++++|.++ .+|..+.++++|++|++++|.+.+ ..|..++.++ +|+.|++..|...+..|..+..
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--cCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 99999999999999999999 899999999999999999999986 5788899998 9999999999888778888999
Q ss_pred CccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCC
Q 009315 323 SKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPE 402 (537)
Q Consensus 323 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~ 402 (537)
++ |+.|++++|.+.+ ..+..+..+++|+.|++++ +.+.+.. +. + .. ++
T Consensus 197 l~-L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~-N~l~~~~----------------------~~-~---~~-l~ 244 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEG---DASVLFGSDKNTQKIHLAK-NSLAFDL----------------------GK-V---GL-SK 244 (313)
T ss_dssp CC-CSEEECCSSEEEE---CCGGGCCTTSCCSEEECCS-SEECCBG----------------------GG-C---CC-CT
T ss_pred Cc-ccEEECcCCcccC---cCCHHHhcCCCCCEEECCC-Cceeeec----------------------Cc-c---cc-cC
Confidence 97 9999999999886 5677789999999999988 4332211 11 1 12 38
Q ss_pred CeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCc
Q 009315 403 KLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELK 465 (537)
Q Consensus 403 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 465 (537)
+|++|++++|.+.+.+|..++.+++|+.|++++|.+++..|. ...+++|+.|++.+|+.+.
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--CccccccChHHhcCCCCcc
Confidence 999999999999988999999999999999999999887665 4789999999999986443
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=2.4e-24 Score=218.71 Aligned_cols=290 Identities=18% Similarity=0.171 Sum_probs=225.0
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCC
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGD 249 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~ 249 (537)
.++|+.|.+.++....+|.. +++|++|++++|.+..+|.. .++|++|++++|.+..+| .+++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--------------~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~ 151 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--------------PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQN 151 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--------------CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTT
T ss_pred cCCCCEEEccCCcCCccccc--------------cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCC
Confidence 46889998888777667642 57899999999988887643 278999999999999999 5999
Q ss_pred CCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEE
Q 009315 250 LPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKL 329 (537)
Q Consensus 250 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L 329 (537)
+++|++|++++|+++.+|..+ .+|++|++++|.+.+ +| .++.+++|++|++.+|...+ +|. ..++|+.|
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~---l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE---LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEE
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc---Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEE
Confidence 999999999999999888654 599999999999887 45 58999999999999887764 332 23589999
Q ss_pred eEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEE
Q 009315 330 GLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTL 409 (537)
Q Consensus 330 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L 409 (537)
++++|.+. .+| .+..+++|+.|++++ +.+.+... .+.+|+.+++.++....+ ...+++|+.|++
T Consensus 221 ~l~~n~l~----~lp-~~~~l~~L~~L~l~~-N~l~~l~~-------~~~~L~~L~l~~N~l~~l---~~~~~~L~~L~l 284 (454)
T 1jl5_A 221 VAGNNILE----ELP-ELQNLPFLTTIYADN-NLLKTLPD-------LPPSLEALNVRDNYLTDL---PELPQSLTFLDV 284 (454)
T ss_dssp ECCSSCCS----SCC-CCTTCTTCCEEECCS-SCCSSCCS-------CCTTCCEEECCSSCCSCC---CCCCTTCCEEEC
T ss_pred ECcCCcCC----ccc-ccCCCCCCCEEECCC-CcCCcccc-------cccccCEEECCCCccccc---CcccCcCCEEEC
Confidence 99999887 445 388999999999998 55543221 247899999987643322 223589999999
Q ss_pred ecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCC-ccccEEEeccCCCCceeEeCCCcccccccccccccccC
Q 009315 410 SLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWF-PQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKL 488 (537)
Q Consensus 410 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 488 (537)
++|.+.+ ++. -.++|+.|++++|.+.+. ..+ ++|+.|++++|. +..++. .+++|+.|++++|...
T Consensus 285 s~N~l~~-l~~---~~~~L~~L~l~~N~l~~i------~~~~~~L~~L~Ls~N~-l~~lp~---~~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 285 SENIFSG-LSE---LPPNLYYLNASSNEIRSL------CDLPPSLEELNVSNNK-LIELPA---LPPRLERLIASFNHLA 350 (454)
T ss_dssp CSSCCSE-ESC---CCTTCCEEECCSSCCSEE------CCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCS
T ss_pred cCCccCc-ccC---cCCcCCEEECcCCcCCcc------cCCcCcCCEEECCCCc-cccccc---cCCcCCEEECCCCccc
Confidence 9999875 221 127899999999998751 223 599999999984 444543 3799999999999876
Q ss_pred CCccccCCCCCCCEEEEecCchHHHH--HHHhhccCc
Q 009315 489 KNPFESTNLTGLKELTLTDMEKSFED--EVKQSLAGT 523 (537)
Q Consensus 489 ~lp~~~~~l~~L~~L~l~~c~n~~~~--~~~~~~~~~ 523 (537)
.+|. .+++|+.|+++++ .+.+ .+|.++.++
T Consensus 351 ~lp~---~l~~L~~L~L~~N--~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYN--PLREFPDIPESVEDL 382 (454)
T ss_dssp CCCC---CCTTCCEEECCSS--CCSSCCCCCTTCCEE
T ss_pred cccc---hhhhccEEECCCC--CCCcCCCChHHHHhh
Confidence 6887 4789999999994 4544 566665544
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1e-24 Score=232.55 Aligned_cols=323 Identities=19% Similarity=0.069 Sum_probs=197.7
Q ss_pred ceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCc-ccCC
Q 009315 172 RLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPK-SLGD 249 (537)
Q Consensus 172 ~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~l~~ 249 (537)
.++.|.+.++....+|+..|.+ +++|++|+|++|.+..+| .+|+++++|++|+|++|.+..+|. .|.+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~----------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFS----------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTT----------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCEEEeeCCCCCCCCHHHHhC----------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 5677777777666666654544 677888888877777774 357777888888888877777764 4677
Q ss_pred CCCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchH----------
Q 009315 250 LPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLN---------- 318 (537)
Q Consensus 250 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~---------- 318 (537)
+++|++|++++|+++.+|. .++++++|++|++++|.+.. ...|..++.+++|++|++..|......+.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc-CCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 7888888888887776665 46777788888888777665 33566677777777776554432100000
Q ss_pred --------------------------------------------------------------------------------
Q 009315 319 -------------------------------------------------------------------------------- 318 (537)
Q Consensus 319 -------------------------------------------------------------------------------- 318 (537)
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence
Q ss_pred -----------------------------------------Hh-------------------------------------
Q 009315 319 -----------------------------------------WL------------------------------------- 320 (537)
Q Consensus 319 -----------------------------------------~l------------------------------------- 320 (537)
.+
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 00
Q ss_pred ------hcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCc--------------------cccCC
Q 009315 321 ------RNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSD--------------------LDFGN 374 (537)
Q Consensus 321 ------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--------------------~~~~~ 374 (537)
..+++|+.|+++.|.+... ...+.....+.+|+.+++..+........ .....
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFK-GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEE-EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCCcccccccccccchhhccccccc-cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence 0122333333333332210 01233344556666666654221100000 00122
Q ss_pred CCCCCCcceEEEeeecC-CcCCccccCCCCeeEEEEecccCCC-CchhhhhcCCCccEEEeccccccCceeeecCCCCcc
Q 009315 375 LSKHKKLTELYLIGKLP-RAIDINDQLPEKLTVFTLSLSHLSK-DPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQ 452 (537)
Q Consensus 375 l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 452 (537)
+..+.+++.+++.++.. .........++.|+.|++++|.... ..|..++.+++|++|+|++|.+.+..+.. +.++++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~-f~~l~~ 519 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSS 519 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTT
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH-HcCCCC
Confidence 33345555555543210 0011111123788888888886433 45677888889999999988887654443 788889
Q ss_pred ccEEEeccCCCCceeEeCCCcccccccccccccccCC-CccccCCC-CCCCEEEEec
Q 009315 453 LLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK-NPFESTNL-TGLKELTLTD 507 (537)
Q Consensus 453 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~-lp~~~~~l-~~L~~L~l~~ 507 (537)
|++|+|++|......+..+..+++|+.|++++|.... .|..+.++ ++|+.|++++
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 9999998884333333456778889999999988877 67777777 5799999876
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=203.53 Aligned_cols=253 Identities=17% Similarity=0.136 Sum_probs=184.5
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcc-c
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKS-L 247 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-l 247 (537)
.++|+.|.+.++....+|...+.+ +++|++|++++|.+..+ |..++++++|++|++++|.+..+|.. +
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQR----------CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cccCcEEECCCCcCcccCHHHhcc----------CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 357788888777766666544443 68888888888877776 45688888888888888888888765 7
Q ss_pred CCCCCCcEEeecCCccccCCc--cccccccccEEeccccc-cccccCCCccCCccccccccceEEecCCCCchHHhhcCc
Q 009315 248 GDLPSLETLDVKRTNIATLPK--SIWKSSTLRHLYMSDIR-FQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSK 324 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 324 (537)
+++++|++|++++|.++.+|. .+.++++|++|++++|. +.. ..+..++.+++|++|++..|......|..+..++
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK--IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc--cCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 788888888888888887776 67788888888888874 444 4566788888888888888877766677788888
Q ss_pred cCcEEeEEEecccccHHHHHH-HhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCC
Q 009315 325 DLRKLGLTFHFESLQDQEITK-WIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEK 403 (537)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 403 (537)
+|+.|++++|.+. .++. .+..+++|+.|++++ +.+++.....+. . ....+.
T Consensus 199 ~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~----------------------~-~~~~~~ 250 (353)
T 2z80_A 199 NVSHLILHMKQHI----LLLEIFVDVTSSVECLELRD-TDLDTFHFSELS----------------------T-GETNSL 250 (353)
T ss_dssp EEEEEEEECSCST----THHHHHHHHTTTEEEEEEES-CBCTTCCCC-----------------------------CCCC
T ss_pred cCCeecCCCCccc----cchhhhhhhcccccEEECCC-Cccccccccccc----------------------c-ccccch
Confidence 8888888888875 3333 344578888888887 333322111110 0 011266
Q ss_pred eeEEEEecccCCC----CchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCC
Q 009315 404 LTVFTLSLSHLSK----DPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKE 463 (537)
Q Consensus 404 L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 463 (537)
++.+++.++.+.+ .+|..++.+++|+.|++++|.+.. .+...+..+++|++|++++|+.
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCc
Confidence 7788888887764 367788999999999999999874 3443357899999999999853
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=8.5e-24 Score=208.40 Aligned_cols=249 Identities=18% Similarity=0.086 Sum_probs=131.6
Q ss_pred ceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccCCcc-ccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 281 (537)
++|++|++++|.+..+|. .+.++++|++|++++|.+..++ ..++++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 456667777666666654 5666667777777666665553 4466666777777777666666654 566666777777
Q ss_pred cccccccccCCC-ccCCccccccccceEEec-CCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEE
Q 009315 282 SDIRFQLSAQKP-FVNSSLTKLQTLWGLLIG-KKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLR 359 (537)
Q Consensus 282 ~~~~~~~~~~~~-~~~~~l~~L~~L~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 359 (537)
++|.+.. ... ..++.+++|++|++..|. .....+..++.+++|+.|++++|.+.+ ..+..+..+
T Consensus 132 ~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l~~l--------- 197 (353)
T 2z80_A 132 LGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---YEPKSLKSI--------- 197 (353)
T ss_dssp TTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---ECTTTTTTC---------
T ss_pred CCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---cCHHHHhcc---------
Confidence 6666554 222 244555555555555442 211112333444444444444443332 112223333
Q ss_pred eeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecccccc
Q 009315 360 SVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYI 439 (537)
Q Consensus 360 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 439 (537)
++|++|++++|.+.......++.+++|+.|++++|.+.
T Consensus 198 ------------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 198 ------------------------------------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ------------------------------------------SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred ------------------------------------------ccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 45555555555554322223344556666666665554
Q ss_pred Cceeee--cCCCCccccEEEeccCCCCc----eeEeCCCcccccccccccccccCCCcccc-CCCCCCCEEEEecCc
Q 009315 440 GEQMTC--QKGWFPQLLVLKLWVLKELK----RWSIEKETMPKLRELEIRRCQKLKNPFES-TNLTGLKELTLTDME 509 (537)
Q Consensus 440 ~~~~~~--~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~lp~~~-~~l~~L~~L~l~~c~ 509 (537)
+..+.. .....+.++.+++.++.... .++.....+++|+.|++++|....+|..+ ..+++|+.|++++++
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 432211 01234455555555542211 12223345667777777777655566653 677777777777744
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.8e-23 Score=216.31 Aligned_cols=265 Identities=18% Similarity=0.112 Sum_probs=174.8
Q ss_pred eeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccc
Q 009315 206 LLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIR 285 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 285 (537)
.+++|+++++.+..+|..+. ++|++|++++|.+..+|. .+++|++|++++|+++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 46677777666666666554 567777777777766665 45667777777777666665 55667777777766
Q ss_pred cccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCC
Q 009315 286 FQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFL 365 (537)
Q Consensus 286 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 365 (537)
+.. +|. .+++|+.|++.+|.... +|. .+++|+.|++++|.+.. +|. ..++|+.|++++ |.++
T Consensus 113 l~~---l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~----l~~---~~~~L~~L~L~~-N~l~ 174 (622)
T 3g06_A 113 LTH---LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS----LPA---LPSELCKLWAYN-NQLT 174 (622)
T ss_dssp CCC---CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC----CCC---CCTTCCEEECCS-SCCS
T ss_pred CCC---CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC----cCC---ccCCCCEEECCC-CCCC
Confidence 655 333 45666666666665542 332 24677777777776653 221 345677777776 3333
Q ss_pred CCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeee
Q 009315 366 EPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTC 445 (537)
Q Consensus 366 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 445 (537)
... ..+++|+.|+++++....+ ...+++|+.|++++|.+.. +|. .+++|+.|++++|.+++. +
T Consensus 175 ~l~-------~~~~~L~~L~Ls~N~l~~l---~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p-- 237 (622)
T 3g06_A 175 SLP-------MLPSGLQELSVSDNQLASL---PTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P-- 237 (622)
T ss_dssp CCC-------CCCTTCCEEECCSSCCSCC---CCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C--
T ss_pred CCc-------ccCCCCcEEECCCCCCCCC---CCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C--
Confidence 221 2346677777766532222 2224788899999888874 342 357899999999888762 2
Q ss_pred cCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecCchHHHHHHHhhcc
Q 009315 446 QKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDMEKSFEDEVKQSLA 521 (537)
Q Consensus 446 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~ 521 (537)
..+++|+.|++++| .+..++. .+++|+.|++++|....+|..+.++++|+.|+++++ .+.+..+..+.
T Consensus 238 --~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N--~l~~~~~~~l~ 305 (622)
T 3g06_A 238 --VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN--PLSERTLQALR 305 (622)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSC--CCCHHHHHHHH
T ss_pred --CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCC--CCCCcCHHHHH
Confidence 45688999999887 5555554 678899999999876668888889999999999984 45565555444
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=8.7e-24 Score=204.05 Aligned_cols=226 Identities=19% Similarity=0.123 Sum_probs=156.9
Q ss_pred ceeeEEEcCCCCCCCCchh-hccccccceeecCCCCCCcc---CcccCCCCCCcEEeecCCccccCCccccccccccEEe
Q 009315 205 RLLRVLDLERVYKPVLPET-IGKLRLLRHVGLRWTFLDSI---PKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLY 280 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 280 (537)
++|++|+++++.+..+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4688888888888888754 67888888888888877654 5556678888888888888888888888888888888
Q ss_pred ccccccccccCCC-ccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEE
Q 009315 281 MSDIRFQLSAQKP-FVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLR 359 (537)
Q Consensus 281 l~~~~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 359 (537)
+++|.+.. ..+ ..+..+++|++|++..|......+..+..+++|+.|++++|.+... ..|..+..+++|+.|+++
T Consensus 108 l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 108 FQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CTTSEEES--STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECT
T ss_pred CCCCcccc--cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECC
Confidence 88888776 222 4677777777777777666555566677777777777777766531 234556667777777776
Q ss_pred eeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecccccc
Q 009315 360 SVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYI 439 (537)
Q Consensus 360 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 439 (537)
+ +.++.. .|..+ ..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.
T Consensus 184 ~-n~l~~~----------------------~~~~~---~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 184 Q-CQLEQL----------------------SPTAF---NSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp T-SCCCEE----------------------CTTTT---TTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred C-CCcCCc----------------------CHHHh---cCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 6 322211 11222 222 67777888888777666666777788888888888776
Q ss_pred CceeeecCCCCc-cccEEEeccCC
Q 009315 440 GEQMTCQKGWFP-QLLVLKLWVLK 462 (537)
Q Consensus 440 ~~~~~~~~~~~~-~L~~L~l~~~~ 462 (537)
+..+.. +..++ +|+.|++++|+
T Consensus 237 ~~~~~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSS-CCCCCTTCCEEECTTCC
T ss_pred ccCHHH-HHhhhccCCEEEccCCC
Confidence 654443 55563 77788877764
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=6.4e-24 Score=204.99 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=155.2
Q ss_pred eeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc-cCCCCCCcEEeecCCccccC---CccccccccccEEecc
Q 009315 207 LRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS-LGDLPSLETLDVKRTNIATL---PKSIWKSSTLRHLYMS 282 (537)
Q Consensus 207 L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~ 282 (537)
-+.++.+++.++.+|..+. ++|++|++++|.+..+|.. +.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3578888888999987654 6899999999999999876 68999999999999988754 6677789999999999
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCch-HHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEee
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL-NWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSV 361 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 361 (537)
+|.+.. ++..+..+++|++|++.++......+ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 87 ~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 87 FNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---AFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp SCSEEE---EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE---CSTTTTTTCTTCCEEECTTC
T ss_pred CCcccc---ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc---cchhhcccCcCCCEEECCCC
Confidence 998876 55556677777777766655443222 345555666666665555443 22333444555555555442
Q ss_pred CCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 362 NDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
.+.+ ...|..+ ..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.
T Consensus 161 -~l~~---------------------~~~~~~~---~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 161 -SFQE---------------------NFLPDIF---TEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp -EEGG---------------------GEECSCC---TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred -cccc---------------------ccchhHH---hhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 1110 0011222 122 5666666666666655566666666666666666666543
Q ss_pred eeeecCCCCccccEEEeccCCCCceeEeCCCccc-ccccccccccccC
Q 009315 442 QMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMP-KLRELEIRRCQKL 488 (537)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~c~~l 488 (537)
.+.. +..+++|+.|++++|......+.....+| +|+.|++++|+..
T Consensus 215 ~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 215 DTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSGG-GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred Chhh-ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 2222 45556666666666543333333334443 5555665555543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=6.9e-24 Score=202.53 Aligned_cols=131 Identities=21% Similarity=0.162 Sum_probs=74.1
Q ss_pred ceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCc-cccC-CccccccccccEEe
Q 009315 205 RLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTN-IATL-PKSIWKSSTLRHLY 280 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~ 280 (537)
++|++|+++++.+..++ ..+..+++|++|++++|.+..+ |..+.++++|++|++++|. ++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45666666666666554 3456666666666666666555 4556666666666666664 5544 44566666666666
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEeccc
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 337 (537)
+++|.+.. ..+..++.+++|++|++.+|......+..++.+++|+.|++++|.+.
T Consensus 112 l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 112 LDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CTTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCE--ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 66666555 34445555555555555555444333333444555555555544443
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=4.8e-26 Score=233.22 Aligned_cols=333 Identities=16% Similarity=0.099 Sum_probs=202.0
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhh-cccc----ccceeecCCCCCC
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETI-GKLR----LLRHVGLRWTFLD 241 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~-~~l~----~L~~L~l~~~~i~ 241 (537)
..+++|+++.+.++.........+...+ ..+++|++|++++|.+... +..+ ..++ +|++|++++|.+.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSAL------RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHH------HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHH------HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 4567788877776654322212222222 2267788888887766542 2222 2344 5888888888775
Q ss_pred -----ccCcccCCCCCCcEEeecCCcccc-CCcccc-----ccccccEEecccccccccc--CCCccCCccccccccceE
Q 009315 242 -----SIPKSLGDLPSLETLDVKRTNIAT-LPKSIW-----KSSTLRHLYMSDIRFQLSA--QKPFVNSSLTKLQTLWGL 308 (537)
Q Consensus 242 -----~lp~~l~~l~~L~~L~L~~~~l~~-lp~~i~-----~l~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~~~ 308 (537)
.+|..+.++++|++|++++|.++. .+..+. ..++|++|++++|.+.... .++..++.+++|++|++.
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 456777888888888888887762 222222 2456888888888766511 124445667788888887
Q ss_pred EecCCCCchHHhh-----cCccCcEEeEEEeccccc-HHHHHHHhccCCCcceEEEEeeCCCCCCCcccc-CC-CCCCCC
Q 009315 309 LIGKKSRPLNWLR-----NSKDLRKLGLTFHFESLQ-DQEITKWIKDLEHLESLMLRSVNDFLEPSDLDF-GN-LSKHKK 380 (537)
Q Consensus 309 ~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-l~~~~~ 380 (537)
+|......+..+. ..++|+.|++++|.+... ...++..+..+++|+.|++++| .++......+ .. ...+++
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCC
Confidence 7765433333332 255788888888877642 1235667777888888888773 3322110000 11 123577
Q ss_pred cceEEEeeecCCc------CCccccCCCCeeEEEEecccCCCCchhhhhc-----CCCccEEEeccccccCcee---eec
Q 009315 381 LTELYLIGKLPRA------IDINDQLPEKLTVFTLSLSHLSKDPMPVLGQ-----LKELKILRLFAHSYIGEQM---TCQ 446 (537)
Q Consensus 381 L~~l~l~~~~~~~------~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~~---~~~ 446 (537)
|+.+++.++.... ...+..+ ++|++|++++|.+.+..+..+.. .++|+.|++++|.+.+... ...
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 8888886652221 1111223 67888888888776444444433 2688888888887765421 112
Q ss_pred CCCCccccEEEeccCCCCcee-EeCC-----CcccccccccccccccCC-----CccccCCCCCCCEEEEecCc
Q 009315 447 KGWFPQLLVLKLWVLKELKRW-SIEK-----ETMPKLRELEIRRCQKLK-----NPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 447 ~~~~~~L~~L~l~~~~~l~~~-~~~~-----~~~~~L~~L~l~~c~~l~-----lp~~~~~l~~L~~L~l~~c~ 509 (537)
+..+++|++|++++|. +... +... ...++|++|++++|.... +|..+..+++|++|++++|+
T Consensus 337 l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 337 LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4456888888888873 3221 1111 125688899998887762 67777788889999998865
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.2e-22 Score=193.98 Aligned_cols=265 Identities=18% Similarity=0.107 Sum_probs=178.7
Q ss_pred eEEEcCCCCCCCCchhhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccC-CccccccccccEEeccccc
Q 009315 208 RVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSDIR 285 (537)
Q Consensus 208 ~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 285 (537)
++++.+++.+..+|..+ .++|++|++++|.+..+| ..+.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67888888888888654 468999999999988776 4588899999999999988865 6778889999999999987
Q ss_pred -cccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCC
Q 009315 286 -FQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDF 364 (537)
Q Consensus 286 -~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 364 (537)
+.. ..+..++.+++|++|++.++......+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++ +.+
T Consensus 92 ~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~-n~l 165 (285)
T 1ozn_A 92 QLRS--VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---LPDDTFRDLGNLTHLFLHG-NRI 165 (285)
T ss_dssp TCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCC
T ss_pred Cccc--cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---cCHhHhccCCCccEEECCC-Ccc
Confidence 555 457788889999999998888876667778889999999999988774 2334577888999999987 433
Q ss_pred CCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceee
Q 009315 365 LEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMT 444 (537)
Q Consensus 365 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 444 (537)
+.... ..+ ..+ ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+.
T Consensus 166 ~~~~~----------------------~~~---~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 166 SSVPE----------------------RAF---RGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp CEECT----------------------TTT---TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred cccCH----------------------HHh---cCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 32111 111 112 5666777777766655566666777777777777766653322
Q ss_pred ecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCC-CccccCC--CCCCCEEEEecC
Q 009315 445 CQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK-NPFESTN--LTGLKELTLTDM 508 (537)
Q Consensus 445 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~-lp~~~~~--l~~L~~L~l~~c 508 (537)
.+..+++|+.|++++|+....... ......++.+....+.... .|..+.. +..++..++.+|
T Consensus 220 -~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 220 -ALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp -HHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred -HcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 255667777777766642211100 0112345555555554444 5555432 334444444444
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=205.16 Aligned_cols=223 Identities=17% Similarity=0.159 Sum_probs=142.6
Q ss_pred ceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccCCc-cccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l 281 (537)
+++++|+|++|.+..++ ..|.++++|++|++++|.+..++ ..+.++++|++|++++|+++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46788888888777764 67788888888888888887665 557788888888888888887765 4777888888888
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCch-HHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL-NWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
++|.+.. ..+..+..+++|++|++..+.....++ ..+..+++|+.|++++|.+.. +| .+..+++|+.|++++
T Consensus 144 ~~N~i~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 144 RNNPIES--IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE----IP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp CSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS----CC-CCTTCSSCCEEECTT
T ss_pred CCCcccc--cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc----cc-ccCCCcccCEEECCC
Confidence 8887776 555567777788877777644433332 346667777777777776652 23 255666777777766
Q ss_pred eCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccC
Q 009315 361 VNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIG 440 (537)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 440 (537)
|.++...+ ..+..+ ++|+.|++++|.+.+..+..+..+++|+.|+|++|.+++
T Consensus 217 -N~l~~~~~---~~~~~l-----------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 217 -NHLSAIRP---GSFQGL-----------------------MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp -SCCCEECT---TTTTTC-----------------------TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred -CccCccCh---hhhccC-----------------------ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 33332211 111112 555666666666555555555666666666666665554
Q ss_pred ceeeecCCCCccccEEEeccCC
Q 009315 441 EQMTCQKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~~~ 462 (537)
..+. .+..+++|+.|++++|+
T Consensus 270 ~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 270 LPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCTT-TTSSCTTCCEEECCSSC
T ss_pred cChh-HhccccCCCEEEcCCCC
Confidence 3222 24555666666665553
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.9e-22 Score=205.50 Aligned_cols=223 Identities=19% Similarity=0.127 Sum_probs=147.6
Q ss_pred ceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccCCcc-ccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 281 (537)
+++++|+|++|.+..+ |..|.++++|++|++++|.+..++ ..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5688888888877776 567888888888888888887665 5678888888888888888877654 677888888888
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCch-HHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL-NWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
++|.+.. ..+..+..+++|+.|++..+.....++ ..+..+++|+.|++++|.+.. +| .+..+++|+.|++++
T Consensus 155 ~~N~l~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----~~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 155 RNNPIES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----MP-NLTPLVGLEELEMSG 227 (452)
T ss_dssp CSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----CC-CCTTCTTCCEEECTT
T ss_pred CCCCcce--eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----cc-cccccccccEEECcC
Confidence 8888776 555677778888888777654433332 346667777777777766653 22 255666666666665
Q ss_pred eCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccC
Q 009315 361 VNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIG 440 (537)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 440 (537)
|.+++..+ ..+ ..+ ++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+
T Consensus 228 -N~l~~~~~----------------------~~~---~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 228 -NHFPEIRP----------------------GSF---HGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp -SCCSEECG----------------------GGG---TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred -CcCcccCc----------------------ccc---cCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 33322111 111 222 566666666666665556666666677777776666654
Q ss_pred ceeeecCCCCccccEEEeccCC
Q 009315 441 EQMTCQKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~~~ 462 (537)
..+. .+..+++|+.|++++|+
T Consensus 281 ~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCTT-SSTTCTTCCEEECCSSC
T ss_pred cChH-HhccccCCCEEEccCCC
Confidence 3222 25566666667666653
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=3.5e-22 Score=203.61 Aligned_cols=246 Identities=18% Similarity=0.080 Sum_probs=180.6
Q ss_pred eeeEEEcCCCCCCCCchhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCccccCC-ccccccccccEEeccc
Q 009315 206 LLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTNIATLP-KSIWKSSTLRHLYMSD 283 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 283 (537)
..+.++.++..+..+|..+. ++|++|++++|.+..+ |..+.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35678888888888987664 6899999999999877 567899999999999999998655 6788999999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|.+.. ..+..++.+++|++|++.+|......+..+..+++|+.|++++++.... .-+..+..+++|+.|++++ +.
T Consensus 133 n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--i~~~~~~~l~~L~~L~L~~-n~ 207 (452)
T 3zyi_A 133 NWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFEGLFNLKYLNLGM-CN 207 (452)
T ss_dssp SCCSB--CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--ECTTTTTTCTTCCEEECTT-SC
T ss_pred CcCCc--cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc--cChhhccCCCCCCEEECCC-Cc
Confidence 99887 5666688888888888887776644444667777777777776443221 1122355666777777765 22
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCcee
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQM 443 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 443 (537)
++. +..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 208 l~~---------------------------~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 208 IKD---------------------------MPNLTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp CSS---------------------------CCCCTTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred ccc---------------------------ccccccc-ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 221 1111223 788888888888887778888888999999998888876444
Q ss_pred eecCCCCccccEEEeccCCCCceeE-eCCCcccccccccccccccC
Q 009315 444 TCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRELEIRRCQKL 488 (537)
Q Consensus 444 ~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l 488 (537)
.. +..+++|+.|++++| .+..++ .....+++|+.|++++|+..
T Consensus 260 ~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NA-FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TT-TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HH-hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcC
Confidence 33 778888888888887 444444 33466788888888888754
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=4.3e-22 Score=202.20 Aligned_cols=246 Identities=20% Similarity=0.112 Sum_probs=186.2
Q ss_pred eeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccCC-ccccccccccEEeccc
Q 009315 206 LLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATLP-KSIWKSSTLRHLYMSD 283 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 283 (537)
..+.++.++..+..+|..+. +++++|++++|.+..++ ..+.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 35678888888999998765 68999999999998775 67899999999999999998665 5788999999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|.+.. ..+..+..+++|++|++.+|......+..+..+++|+.|++++|+.... ..+..+..+++|+.|++++ +.
T Consensus 122 n~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--i~~~~~~~l~~L~~L~L~~-n~ 196 (440)
T 3zyj_A 122 NRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFEGLSNLRYLNLAM-CN 196 (440)
T ss_dssp SCCSS--CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--ECTTTTTTCSSCCEEECTT-SC
T ss_pred CcCCe--eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce--eCcchhhcccccCeecCCC-Cc
Confidence 98887 5556788888888888888877654455677778888888776543321 1122456677777777766 32
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCcee
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQM 443 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 443 (537)
++. +..+..+ ++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+
T Consensus 197 l~~---------------------------~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 197 LRE---------------------------IPNLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp CSS---------------------------CCCCTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred Ccc---------------------------ccccCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 221 1111223 789999999999887778889999999999999998876544
Q ss_pred eecCCCCccccEEEeccCCCCceeE-eCCCcccccccccccccccC
Q 009315 444 TCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRELEIRRCQKL 488 (537)
Q Consensus 444 ~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l 488 (537)
.. +..+++|+.|+|++|. +..++ .....+++|+.|++++|+..
T Consensus 249 ~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 249 NA-FDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TS-STTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hh-hcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCCcc
Confidence 33 7888999999999884 44444 33467889999999988854
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=9e-25 Score=223.71 Aligned_cols=330 Identities=18% Similarity=0.080 Sum_probs=210.5
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCc----eeeEEEcCCCCCC-----CCchhhccccccceeecCCC
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYR----LLRVLDLERVYKP-----VLPETIGKLRLLRHVGLRWT 238 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~-----~lp~~~~~l~~L~~L~l~~~ 238 (537)
..+++|++|.+.++..+... +..+... ++ +|++|++++|.+. .++..+..+++|++|++++|
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~---~~~l~~~------l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVG---VHCVLQG------LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHH---HHHHHHT------TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred HhCCCcCEEeCCCCcCChHH---HHHHHHH------HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 44678888888776533221 2222111 33 6899999988776 35778888889999999988
Q ss_pred CCCcc-----Ccc-cCCCCCCcEEeecCCcccc-----CCccccccccccEEeccccccccccCCCccCC-----ccccc
Q 009315 239 FLDSI-----PKS-LGDLPSLETLDVKRTNIAT-----LPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNS-----SLTKL 302 (537)
Q Consensus 239 ~i~~l-----p~~-l~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~l~~L 302 (537)
.++.. ... ....++|++|++++|.++. ++..+..+++|++|++++|.+.. ..+..+. ..++|
T Consensus 124 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~~L 201 (461)
T 1z7x_W 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE--AGVRVLCQGLKDSPCQL 201 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH--HHHHHHHHHHHHSCCCC
T ss_pred cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch--HHHHHHHHHHhcCCCCc
Confidence 87432 112 2235679999999988773 45566778899999999888665 2222222 24588
Q ss_pred cccceEEecCCCC----chHHhhcCccCcEEeEEEeccccc-HHHHHHH-hccCCCcceEEEEeeCCCCCCCcc-ccCCC
Q 009315 303 QTLWGLLIGKKSR----PLNWLRNSKDLRKLGLTFHFESLQ-DQEITKW-IKDLEHLESLMLRSVNDFLEPSDL-DFGNL 375 (537)
Q Consensus 303 ~~L~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~-~~~~l 375 (537)
++|++.+|..... ++..+..+++|+.|++++|.+... ...+... ...+++|+.|++++| .++..... ....+
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVL 280 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHH
Confidence 8888888877653 466777888999999988877642 1122222 335788999999884 44321100 01223
Q ss_pred CCCCCcceEEEeeecCC-----cC-CccccCCCCeeEEEEecccCCCC----chhhhhcCCCccEEEeccccccCceeee
Q 009315 376 SKHKKLTELYLIGKLPR-----AI-DINDQLPEKLTVFTLSLSHLSKD----PMPVLGQLKELKILRLFAHSYIGEQMTC 445 (537)
Q Consensus 376 ~~~~~L~~l~l~~~~~~-----~~-~~~~~~~~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 445 (537)
..+++|+.++++++... .+ ..+...+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 34678888888765211 01 11111125889999999888754 4566778899999999988876543321
Q ss_pred ---cCC-CCccccEEEeccCCCCc----eeEeCCCcccccccccccccccCC-----Ccccc-CCCCCCCEEEEecCc
Q 009315 446 ---QKG-WFPQLLVLKLWVLKELK----RWSIEKETMPKLRELEIRRCQKLK-----NPFES-TNLTGLKELTLTDME 509 (537)
Q Consensus 446 ---~~~-~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~-----lp~~~-~~l~~L~~L~l~~c~ 509 (537)
.+. ..++|++|++++|.... .++.....+++|++|++++|+... +...+ ...++|+.|++.++.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 111 26789999998885432 344444567889999999887654 22222 224568888877643
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1e-21 Score=205.51 Aligned_cols=242 Identities=18% Similarity=0.100 Sum_probs=131.8
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecccc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 284 (537)
++|++|++++|.+..+|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 345555555555555554 34555555555555555554 34555555555555555554 3455555555555
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCC
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDF 364 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 364 (537)
.+.. +|.. +++|++|++..|.... +|. .+++|+.|++++|.+.. +| ..+++|+.|++++ |.+
T Consensus 132 ~l~~---lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~----l~---~~~~~L~~L~Ls~-N~l 193 (622)
T 3g06_A 132 QLTS---LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS----LP---MLPSGLQELSVSD-NQL 193 (622)
T ss_dssp CCSC---CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC----CC---CCCTTCCEEECCS-SCC
T ss_pred CCCc---CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC----Cc---ccCCCCcEEECCC-CCC
Confidence 5444 2222 2555555555554432 221 23455666666665552 22 3345666666665 333
Q ss_pred CCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceee
Q 009315 365 LEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMT 444 (537)
Q Consensus 365 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 444 (537)
+.... .+.+|+.|.+.++....+. ..+++|+.|++++|.+++ +| ..+++|+.|++++|.+... +.
T Consensus 194 ~~l~~-------~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~ 258 (622)
T 3g06_A 194 ASLPT-------LPSELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM 258 (622)
T ss_dssp SCCCC-------CCTTCCEEECCSSCCSSCC---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC
T ss_pred CCCCC-------ccchhhEEECcCCcccccC---CCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc
Confidence 32111 1255666666554222221 123677777777777764 33 4557777777777777542 22
Q ss_pred ecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCC-Cccc
Q 009315 445 CQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLK-NPFE 493 (537)
Q Consensus 445 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~-lp~~ 493 (537)
.+++|+.|++++| .+..+|.....+++|+.|++++|+... .|..
T Consensus 259 ----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 259 ----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp ----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred ----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 4667777777776 444666556667777777777777655 4443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=8.8e-23 Score=197.80 Aligned_cols=101 Identities=10% Similarity=-0.080 Sum_probs=51.7
Q ss_pred CCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCccccccccc
Q 009315 402 EKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELE 481 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 481 (537)
++|+.|++++|.+.+. +....+++|++|++++|.+.+. +.. +..+++|+.|++++| .+..++.....+++|+.|+
T Consensus 169 ~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPE-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFD 243 (317)
T ss_dssp TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGG-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEE
T ss_pred CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc-hhh-hcccCcccEEECcCC-cccchhhHhhcCCCCCEEE
Confidence 4555555555555432 1223355566666655555432 111 445555555555555 3334444444555555555
Q ss_pred ccccccCC--CccccCCCCCCCEEEEec
Q 009315 482 IRRCQKLK--NPFESTNLTGLKELTLTD 507 (537)
Q Consensus 482 l~~c~~l~--lp~~~~~l~~L~~L~l~~ 507 (537)
+++|+... +|..+..+++|+.|++.+
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccCCCccCcCHHHHHhccccceEEECCC
Confidence 55555552 555555555555555554
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3.1e-23 Score=200.94 Aligned_cols=241 Identities=14% Similarity=0.019 Sum_probs=188.5
Q ss_pred CceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
+++|++|++++|.+..++ ..+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| ..++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence 678999999999888875 689999999999999999977765 899999999999999988766 34899999999
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHh-ccCCCcceEEEEee
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWI-KDLEHLESLMLRSV 361 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 361 (537)
+|.+.. ..+ ..+++|++|++..|......+..++.+++|+.|++++|.+.. ..+..+ ..+++|+.|++++
T Consensus 108 ~n~l~~--~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~~l~~L~~L~L~~- 178 (317)
T 3o53_A 108 NNNISR--VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT---VNFAELAASSDTLEHLNLQY- 178 (317)
T ss_dssp SSCCSE--EEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE---EEGGGGGGGTTTCCEEECTT-
T ss_pred CCccCC--cCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc---ccHHHHhhccCcCCEEECCC-
Confidence 998887 222 336788888888888776556677888888888888888775 223333 4678888888877
Q ss_pred CCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 362 NDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
+.++.. +.. .. +++|+.|++++|.+.+ ++..+..+++|+.|++++|.+.+
T Consensus 179 N~l~~~-----------------------~~~----~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~- 228 (317)
T 3o53_A 179 NFIYDV-----------------------KGQ----VV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL- 228 (317)
T ss_dssp SCCCEE-----------------------ECC----CC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred CcCccc-----------------------ccc----cc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-
Confidence 333211 011 11 3899999999999985 55569999999999999999974
Q ss_pred eeeecCCCCccccEEEeccCCCC-ceeEeCCCcccccccccccccccCC
Q 009315 442 QMTCQKGWFPQLLVLKLWVLKEL-KRWSIEKETMPKLRELEIRRCQKLK 489 (537)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~ 489 (537)
.+. .+..+++|+.|++++|+.. ..++.....+++|+.|++.+|..+.
T Consensus 229 l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 229 IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp ECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 333 3788999999999999765 3444555678999999999887776
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=3.1e-23 Score=200.50 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=55.7
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCC--ccCcccC-------CCCCCcEEeecCCccc-cCCccc--cc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLD--SIPKSLG-------DLPSLETLDVKRTNIA-TLPKSI--WK 272 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~l~-------~l~~L~~L~L~~~~l~-~lp~~i--~~ 272 (537)
++|+.|+++++.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.++ .+|..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 3444445554444 444444333 455555554442 2333332 3445555555555444 344443 44
Q ss_pred cccccEEeccccccccccCCCccCCcc-----ccccccceEEecCCCCchHHhhcCccCcEEeEEEecc
Q 009315 273 SSTLRHLYMSDIRFQLSAQKPFVNSSL-----TKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFE 336 (537)
Q Consensus 273 l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 336 (537)
+++|++|++++|.+.+ . |..++.+ ++|++|++.+|......+..++.+++|+.|++++|.+
T Consensus 120 l~~L~~L~Ls~N~l~~--~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 120 GPDLNILNLRNVSWAT--R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp SCCCSEEEEESCBCSS--S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred CCCccEEEccCCCCcc--h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 5555555555554444 1 3333333 4444444444444333333444444444444444443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.3e-23 Score=201.40 Aligned_cols=250 Identities=20% Similarity=0.159 Sum_probs=185.6
Q ss_pred hhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccc--cCCcccc-------ccccccEEeccccccccccCCC
Q 009315 223 TIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIA--TLPKSIW-------KSSTLRHLYMSDIRFQLSAQKP 293 (537)
Q Consensus 223 ~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~ 293 (537)
.++..++|++|++++|.+ .+|..+... |++|++++|.++ .+|..+. ++++|++|++++|.+.+ ..|
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG--TAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS--CCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc--hhH
Confidence 356778899999999988 888876654 999999999885 5777665 78999999999999886 456
Q ss_pred ccC--CccccccccceEEecCCCCchHHhhcC-----ccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCC
Q 009315 294 FVN--SSLTKLQTLWGLLIGKKSRPLNWLRNS-----KDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLE 366 (537)
Q Consensus 294 ~~~--~~l~~L~~L~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 366 (537)
..+ +.+++|++|++.+|..... |..++.+ ++|++|++++|.+.. ..+..+..+++|+.|++++| .+.+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N-~l~~ 187 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN---FSCEQVRVFPALSTLDLSDN-PELG 187 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC---CCTTTCCCCSSCCEEECCSC-TTCH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc---chHHHhccCCCCCEEECCCC-CcCc
Confidence 654 8888889888888887755 6666666 788888888888764 33456777888888888773 3221
Q ss_pred CCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCC--ch-hhhhcCCCccEEEeccccccCcee
Q 009315 367 PSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKD--PM-PVLGQLKELKILRLFAHSYIGEQM 443 (537)
Q Consensus 367 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~-~~l~~l~~L~~L~L~~~~~~~~~~ 443 (537)
... .+.... +..+ ++|++|++++|.+.+. .+ ..+..+++|+.|++++|.+.+..+
T Consensus 188 ~~~--------------------~~~~~~-~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 188 ERG--------------------LISALC-PLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHH--------------------HHHHSC-TTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred chH--------------------HHHHHH-hccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 100 000110 0222 7899999999998731 22 344678999999999999988654
Q ss_pred eecCCCCccccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCCCEEEEecC
Q 009315 444 TCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGLKELTLTDM 508 (537)
Q Consensus 444 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c 508 (537)
...+..+++|+.|++++|. ++.++.... ++|+.|++++|....+|. +..+++|++|++++.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred hhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 3336678999999999984 456655443 899999999998777876 889999999999983
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=8.7e-22 Score=201.86 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=42.7
Q ss_pred CceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
+++|++|+|++|.+..+ |..++.+++|++|++++|.+..+++ ++.+++|++|++++|.++.+|.. ++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 34566666665555554 2455555566666666555544433 55555555555555555544422 555555555
Q ss_pred cccccc
Q 009315 283 DIRFQL 288 (537)
Q Consensus 283 ~~~~~~ 288 (537)
+|.+..
T Consensus 108 ~N~l~~ 113 (487)
T 3oja_A 108 NNNISR 113 (487)
T ss_dssp SSCCCC
T ss_pred CCcCCC
Confidence 554433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.1e-22 Score=206.40 Aligned_cols=238 Identities=15% Similarity=0.106 Sum_probs=128.4
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCC
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGD 249 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~ 249 (537)
+++|+.|.+.++....+++..|.. +++|++|+|++|.+...++ ++.+++|++|++++|.+..+|.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~---- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAP----------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTT----------CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----
T ss_pred CCCccEEEeeCCcCCCCCHHHHhC----------CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----
Confidence 345566655555555554433332 4556666666555554433 5556666666666665555543
Q ss_pred CCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEE
Q 009315 250 LPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKL 329 (537)
Q Consensus 250 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L 329 (537)
.++|++|++++|.++.+|.. .+++|++|++++|.+.+ ..|..++.+++|+.|++.+|...+..
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~------------- 160 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEIDTVN------------- 160 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCS--GGGBCGGGGSSEEEEECTTSCCCEEE-------------
T ss_pred CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCC--CCchhhcCCCCCCEEECCCCCCCCcC-------------
Confidence 25566666666655544432 34556666666655544 22333333333333333322222111
Q ss_pred eEEEecccccHHHHHHHhc-cCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEE
Q 009315 330 GLTFHFESLQDQEITKWIK-DLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFT 408 (537)
Q Consensus 330 ~l~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~ 408 (537)
|..+. .+++|+.|++++ |.++ .+..... +++|+.|+
T Consensus 161 --------------~~~l~~~l~~L~~L~Ls~-N~l~---------------------------~~~~~~~-l~~L~~L~ 197 (487)
T 3oja_A 161 --------------FAELAASSDTLEHLNLQY-NFIY---------------------------DVKGQVV-FAKLKTLD 197 (487)
T ss_dssp --------------GGGGGGGTTTCCEEECTT-SCCC---------------------------EEECCCC-CTTCCEEE
T ss_pred --------------hHHHhhhCCcccEEecCC-Cccc---------------------------ccccccc-CCCCCEEE
Confidence 11121 333444444433 1111 1111111 37888888
Q ss_pred EecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCC-ceeEeCCCccccccccccccc
Q 009315 409 LSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKEL-KRWSIEKETMPKLRELEIRRC 485 (537)
Q Consensus 409 L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c 485 (537)
+++|.+++ +|+.++.+++|+.|++++|.+.+ .|.. +..+++|+.|++++|+.. ..++.....+++|+.+.+..+
T Consensus 198 Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchh-hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 88888875 44458888888888888888875 3333 677788888888887554 233444566778888887643
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=5.2e-22 Score=209.84 Aligned_cols=298 Identities=13% Similarity=0.057 Sum_probs=134.7
Q ss_pred CceeeEEEcCCCCCC-----CCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCcc----ccCCccccccc
Q 009315 204 YRLLRVLDLERVYKP-----VLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNI----ATLPKSIWKSS 274 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~-----~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l----~~lp~~i~~l~ 274 (537)
+++|++|+++++.+. .++..+.++++|++|++++|.+..+|..+.++++|++|+++.+.. ...+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 444555555544433 122233444555555555554444444444455555555543211 12223344444
Q ss_pred cccEEeccccccccccCCCccCCccccccccceEEecCCCCc-hHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCc
Q 009315 275 TLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRP-LNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHL 353 (537)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 353 (537)
+|+.|+++++... .++..+..+++|++|++.+|...... +..+..+++|+.|+++ +.+... .++.....+++|
T Consensus 271 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~--~l~~~~~~~~~L 344 (592)
T 3ogk_B 271 KLCRLGLSYMGPN---EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR--GLEVLAQYCKQL 344 (592)
T ss_dssp TCCEEEETTCCTT---TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH--HHHHHHHHCTTC
T ss_pred cccccCccccchh---HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH--HHHHHHHhCCCC
Confidence 4555544443211 24444555666666666555432211 1234556666666665 332221 444444555666
Q ss_pred ceEEEEe----------eCCCCCCCccccCCCCCCCCcceEEEeeecCC--cCCccccCCCCeeEEEEe----cccCCCC
Q 009315 354 ESLMLRS----------VNDFLEPSDLDFGNLSKHKKLTELYLIGKLPR--AIDINDQLPEKLTVFTLS----LSHLSKD 417 (537)
Q Consensus 354 ~~L~l~~----------~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~L~----~~~~~~~ 417 (537)
++|++++ |+.++..... .....+++|+.+.+...... .+..+...+++|+.|+++ .+.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLI--ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHH--HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CEEEeecCccccccccccCccCHHHHH--HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 6666662 3333211000 00112455666666332110 011111112566666665 3344432
Q ss_pred -----chhhhhcCCCccEEEecccc--ccCceeeecCCCCccccEEEeccCCCCc-eeEeCCCcccccccccccccccCC
Q 009315 418 -----PMPVLGQLKELKILRLFAHS--YIGEQMTCQKGWFPQLLVLKLWVLKELK-RWSIEKETMPKLRELEIRRCQKLK 489 (537)
Q Consensus 418 -----~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~ 489 (537)
++..+..+++|+.|+++.|. +++..+......+++|+.|++++|.... .++.....+++|++|+|++|+...
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 22334556666666665432 3332222112235666666666654221 122222445666666666666322
Q ss_pred --CccccCCCCCCCEEEEecCc
Q 009315 490 --NPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 490 --lp~~~~~l~~L~~L~l~~c~ 509 (537)
++.....+++|+.|++++|+
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHhcCccCeeECcCCc
Confidence 44444556666666666654
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.9e-20 Score=177.72 Aligned_cols=203 Identities=19% Similarity=0.142 Sum_probs=150.2
Q ss_pred ceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCC-ccccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLP-KSIWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l 281 (537)
+.|++|++++|.+..++. .+.++++|++|++++|.+..++. .+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999988888765 78889999999999998887764 6888999999999999888655 56888999999999
Q ss_pred cccccccccCCCccCCccccccccceEEecCCC-CchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcc----eE
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKS-RPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLE----SL 356 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~----~L 356 (537)
++|.+.. ..+..++.+++|++|++.+|.... .+|..++.+++|+.|++++|.+... .+..+..+++|+ .|
T Consensus 108 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 108 VETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp TTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---CGGGGHHHHTCTTCCEEE
T ss_pred CCCCccc--cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC---CHHHhhhhhhccccceee
Confidence 9998877 455568888888888888887765 3577788888888888888877642 122233333333 56
Q ss_pred EEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccc
Q 009315 357 MLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAH 436 (537)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 436 (537)
++++ +.++.. .+.. ... .+|+.|++++|.+.+..+..++.+++|+.|++++|
T Consensus 183 ~ls~-n~l~~~----------------------~~~~----~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 183 DLSL-NPMNFI----------------------QPGA----FKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCS-SCCCEE----------------------CTTS----SCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ecCC-Cccccc----------------------Cccc----cCC-CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 6665 322211 0111 111 47888999988888666666788888888888888
Q ss_pred cccC
Q 009315 437 SYIG 440 (537)
Q Consensus 437 ~~~~ 440 (537)
.+..
T Consensus 235 ~~~c 238 (276)
T 2z62_A 235 PWDC 238 (276)
T ss_dssp CBCC
T ss_pred cccc
Confidence 8754
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=5.8e-21 Score=201.82 Aligned_cols=325 Identities=13% Similarity=0.031 Sum_probs=233.4
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCC----Ccc
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFL----DSI 243 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i----~~l 243 (537)
..+++|++|.+.++....+....+..++. ++++|++|+++++.+..+|..+..+++|++|+++++.. ...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~------~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIAR------NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHH------HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHh------hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 34678888888776655555555555433 38999999999998888999999999999999986422 345
Q ss_pred CcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcC
Q 009315 244 PKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNS 323 (537)
Q Consensus 244 p~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l 323 (537)
+..+..+++|+.|+++++....+|..+..+++|++|++++|.+.. ..+...++.+++|++|++..+.....++.....+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH-HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH-HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 566888999999999998777888888999999999999998655 2233456889999999998332222344455778
Q ss_pred ccCcEEeEEE-----------ecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCC-CCCCcceEEEeeec-
Q 009315 324 KDLRKLGLTF-----------HFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLS-KHKKLTELYLIGKL- 390 (537)
Q Consensus 324 ~~L~~L~l~~-----------~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~~~~L~~l~l~~~~- 390 (537)
++|++|+++. +.++.. .++.....+++|++|+++. +.+++.. +..+. .+++|+.+++.+.-
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~L~l~~-~~l~~~~---~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQR--GLIALAQGCQELEYMAVYV-SDITNES---LESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHH--HHHHHHHHCTTCSEEEEEE-SCCCHHH---HHHHHHHCCSCCEEEEEECSC
T ss_pred CCCCEEEeecCccccccccccCccCHH--HHHHHHhhCccCeEEEeec-CCccHHH---HHHHHhhCCCCcEEEEeecCC
Confidence 9999999993 455542 4555567799999999955 6554322 22222 26789999997421
Q ss_pred CCcCCc----------cccCCCCeeEEEEeccc--CCCCchhhhhc-CCCccEEEeccccccCceeeecCCCCccccEEE
Q 009315 391 PRAIDI----------NDQLPEKLTVFTLSLSH--LSKDPMPVLGQ-LKELKILRLFAHSYIGEQMTCQKGWFPQLLVLK 457 (537)
Q Consensus 391 ~~~~~~----------~~~~~~~L~~L~L~~~~--~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 457 (537)
...+.. +..+ ++|+.|+++.|. +++..+..++. +++|+.|++++|.+++......+.++++|++|+
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred CccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 111111 1223 899999998654 55555555554 899999999999987644433357899999999
Q ss_pred eccCCCCce--eEeCCCcccccccccccccccCC--CccccCCCCCCCEEEEec
Q 009315 458 LWVLKELKR--WSIEKETMPKLRELEIRRCQKLK--NPFESTNLTGLKELTLTD 507 (537)
Q Consensus 458 l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~--lp~~~~~l~~L~~L~l~~ 507 (537)
+++|+ +.. ++.....+|+|+.|++++|+... +..-...+|.+....+..
T Consensus 495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred ccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 99997 332 22223468999999999999554 333345678887777765
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=9.2e-20 Score=172.25 Aligned_cols=127 Identities=22% Similarity=0.215 Sum_probs=75.8
Q ss_pred eeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCCccc-cccccccEEecccc
Q 009315 207 LRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLPKSI-WKSSTLRHLYMSDI 284 (537)
Q Consensus 207 L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~ 284 (537)
.+.++++++.++.+|..+. ++|++|++++|.+..+|. .+.++++|++|++++|.++.+|..+ .++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 5567777776666665543 567777777777766654 5667777777777777777666543 56777777777777
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEeccc
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 337 (537)
.+.. ..+..++.+++|++|++.++......+..++.+++|+.|++++|.+.
T Consensus 96 ~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 96 KLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCCC--CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCc--CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 6655 33444455555555555544443333333444444555544444443
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=8.5e-20 Score=175.80 Aligned_cols=193 Identities=17% Similarity=0.147 Sum_probs=139.6
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
+++|++|+++++.+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.+| .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 677888888888888876 57888888888888888888877 888888888988888888775 688888888888888
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|.+.. ++. ++.+++|++|++..|......+ +..+++|+.|++++|.+.. ++. +..+++|+.|++++ +.
T Consensus 117 n~l~~---~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----~~~-l~~l~~L~~L~l~~-n~ 184 (308)
T 1h6u_A 117 TQITD---VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD----LTP-LANLSKLTTLKADD-NK 184 (308)
T ss_dssp SCCCC---CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCS-SC
T ss_pred CCCCC---chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC----Chh-hcCCCCCCEEECCC-Cc
Confidence 88766 332 6777777777777666543222 6677777777777776663 222 66677777777766 33
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
++... .+..+ ++|+.|++++|.+.+.. .+..+++|+.|++++|.+.+.
T Consensus 185 l~~~~---------------------------~l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 ISDIS---------------------------PLASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCG---------------------------GGGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCcCh---------------------------hhcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 32111 11222 77888888888877543 378888888888888887653
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.1e-20 Score=178.84 Aligned_cols=89 Identities=21% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCccccccccc
Q 009315 402 EKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELE 481 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 481 (537)
++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+. .+..+++|+.|++++|+.. +.+|+|+.|.
T Consensus 157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~ 228 (272)
T 3rfs_A 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPWD-------CTCPGIRYLS 228 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBC-------CCTTTTHHHH
T ss_pred ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEccCCCcc-------ccCcHHHHHH
Confidence 4555555555555544444455555555555555555443222 2445555555555555321 2355666666
Q ss_pred ccccccCC-CccccCCCC
Q 009315 482 IRRCQKLK-NPFESTNLT 498 (537)
Q Consensus 482 l~~c~~l~-lp~~~~~l~ 498 (537)
+..|.... +|..++.++
T Consensus 229 ~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 229 EWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHHTGGGBBCTTSCBC
T ss_pred HHHHhCCCcccCcccccC
Confidence 66666555 665555444
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=5.3e-21 Score=187.12 Aligned_cols=254 Identities=18% Similarity=0.153 Sum_probs=165.5
Q ss_pred eeEEEcCCCCCCCCchhhccc--cccceeecCCCCCCccCcccCCCCCCcEEeecCCccc-c-CCccccccccccEEecc
Q 009315 207 LRVLDLERVYKPVLPETIGKL--RLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIA-T-LPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 207 L~~L~L~~~~~~~lp~~~~~l--~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~-~-lp~~i~~l~~L~~L~l~ 282 (537)
++.++++++.+. +..+..+ ++++.|++++|.+...+..+.++++|++|++++|.++ . +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 567777766554 5556666 7777777777777665555667777777777777766 2 66667777777777777
Q ss_pred ccccccccCCCccCCccccccccceEEec-CCC-CchHHhhcCccCcEEeEEEe-cccccHHHHHHHhccCC-CcceEEE
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIG-KKS-RPLNWLRNSKDLRKLGLTFH-FESLQDQEITKWIKDLE-HLESLML 358 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~-~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~-~L~~L~l 358 (537)
+|.+.. ..+..++.+++|++|++.+|. ... .++..+..+++|+.|++++| .++.. .++..+..++ +|++|++
T Consensus 127 ~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 127 GLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAHVSETITQLNL 202 (336)
T ss_dssp TCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHHSCTTCCEEEC
T ss_pred CcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--HHHHHHHhcccCCCEEEe
Confidence 776654 345556667777777776662 332 24556777888888888888 66642 4677777888 8888888
Q ss_pred EeeC-CCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEeccc-CCCCchhhhhcCCCccEEEeccc
Q 009315 359 RSVN-DFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSH-LSKDPMPVLGQLKELKILRLFAH 436 (537)
Q Consensus 359 ~~~~-~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~L~~~ 436 (537)
++|. .++. +.++..+ ..+ ++|+.|++++|. +++..+..++.+++|+.|++++|
T Consensus 203 ~~~~~~~~~---------------------~~l~~~~---~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 203 SGYRKNLQK---------------------SDLSTLV---RRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CSCGGGSCH---------------------HHHHHHH---HHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcccCCH---------------------HHHHHHH---hhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 7742 1210 0011111 222 788888888888 56566778888888888888888
Q ss_pred c-ccCceeeecCCCCccccEEEeccCCCCceeEeCCCcc-cccccccccccccCC-CccccCC
Q 009315 437 S-YIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETM-PKLRELEIRRCQKLK-NPFESTN 496 (537)
Q Consensus 437 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~-lp~~~~~ 496 (537)
. +..... ..+..+++|+.|++++| +... ....+ .+|+.|++++|.... .|..+.+
T Consensus 258 ~~~~~~~~-~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETL-LELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGG-GGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHH-HHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 322211 12567888888888887 2110 11123 347777888777766 6655543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.1e-19 Score=168.66 Aligned_cols=200 Identities=22% Similarity=0.250 Sum_probs=147.0
Q ss_pred cccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccc
Q 009315 228 RLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLW 306 (537)
Q Consensus 228 ~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 306 (537)
...++++++++.+..+|..+. .+|++|++++|+++.+|. .+.++++|++|++++|.+.. ..+..++.+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEE
Confidence 357899999999999998765 789999999999997775 68899999999999999887 5556678899999999
Q ss_pred eEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEE
Q 009315 307 GLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYL 386 (537)
Q Consensus 307 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l 386 (537)
+..+......+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++ +.++....
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~-n~l~~~~~----------------- 150 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKS---LPPRVFDSLTKLTYLSLGY-NELQSLPK----------------- 150 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCT-----------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCe---eCHHHhCcCcCCCEEECCC-CcCCccCH-----------------
Confidence 88887765555567778888888888887764 2334466777788888877 33322111
Q ss_pred eeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCC
Q 009315 387 IGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 387 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 462 (537)
..+ ..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|+
T Consensus 151 -----~~~---~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 151 -----GVF---DKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----TTT---TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred -----hHc---cCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCC
Confidence 011 122 677778888877776666667778888888888877765322 235667777778777764
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=6.5e-20 Score=173.44 Aligned_cols=206 Identities=19% Similarity=0.178 Sum_probs=119.0
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCcc-ccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 282 (537)
+++|+.|+++++.+..++ .++.+++|++|++++|.+..++ .++++++|++|++++|.++.+|.. +.++++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 566777777776666654 4666777777777777766654 466777777777777777655543 4667777777777
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeC
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVN 362 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 362 (537)
+|.+.. ..+..++.+++|++|++. +|.+.. ..+..+..+++|+.|++++ +
T Consensus 118 ~n~l~~--~~~~~~~~l~~L~~L~L~------------------------~n~l~~---~~~~~~~~l~~L~~L~l~~-n 167 (272)
T 3rfs_A 118 ENQLQS--LPDGVFDKLTNLTYLNLA------------------------HNQLQS---LPKGVFDKLTNLTELDLSY-N 167 (272)
T ss_dssp TSCCCC--CCTTTTTTCTTCCEEECC------------------------SSCCCC---CCTTTTTTCTTCCEEECCS-S
T ss_pred CCcCCc--cCHHHhccCCCCCEEECC------------------------CCccCc---cCHHHhccCccCCEEECCC-C
Confidence 776655 333334444444444444 444332 1122244555666666655 2
Q ss_pred CCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCce
Q 009315 363 DFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQ 442 (537)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 442 (537)
.+++..+ ..+ ..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+
T Consensus 168 ~l~~~~~----------------------~~~---~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 219 (272)
T 3rfs_A 168 QLQSLPE----------------------GVF---DKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 219 (272)
T ss_dssp CCCCCCT----------------------TTT---TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--
T ss_pred CcCccCH----------------------HHh---cCC-ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--
Confidence 2221111 011 111 566777777777666555566777777777777776532
Q ss_pred eeecCCCCccccEEEeccCCCCceeEeCCCccc
Q 009315 443 MTCQKGWFPQLLVLKLWVLKELKRWSIEKETMP 475 (537)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 475 (537)
.+++|+.|+++.|.....+|...+.++
T Consensus 220 ------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 220 ------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 356666666666655555554444433
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=5.9e-19 Score=173.31 Aligned_cols=238 Identities=16% Similarity=0.077 Sum_probs=118.8
Q ss_pred eEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccc-cCCc-cccccccccE-Eeccc
Q 009315 208 RVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIA-TLPK-SIWKSSTLRH-LYMSD 283 (537)
Q Consensus 208 ~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~-~lp~-~i~~l~~L~~-L~l~~ 283 (537)
++++.+++.++.+|..+ .+++++|+|++|.|+.+|. .|.++++|++|+|++|++. .+|. .+.++++|++ +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 55666677777777655 3567777777777777765 3677777777777777654 4543 3456666554 34444
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|++.. ..+..++.+++|++|++..|......+..+.. ..++..|++.+++.
T Consensus 90 N~l~~--l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 90 NNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIH---------------------------SLQKVLLDIQDNIN 140 (350)
T ss_dssp TTCCE--ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC---------------------------BSSCEEEEEESCTT
T ss_pred Ccccc--cCchhhhhccccccccccccccccCCchhhcc---------------------------cchhhhhhhccccc
Confidence 55554 34445555555555555555443222222222 22344444443332
Q ss_pred CCCCCccccCCCCCCCCcceEEEeeecCCc-CCccccCCCCeeEEEEec-ccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 364 FLEPSDLDFGNLSKHKKLTELYLIGKLPRA-IDINDQLPEKLTVFTLSL-SHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 364 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
+.......+..+ ...++.+++.++--.. ....+.. .+|+.+++.+ |.+....+..|+.+++|++|++++|.++..
T Consensus 141 i~~l~~~~f~~~--~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 141 IHTIERNSFVGL--SFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CCEECTTSSTTS--BSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cccccccchhhc--chhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 221111111000 0123333332211000 0111111 4566666654 334433334556666666666666666542
Q ss_pred eeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccc
Q 009315 442 QMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRR 484 (537)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 484 (537)
+ ...|.+|+.|.+.++..++.+| ....+++|+.+++.+
T Consensus 218 -p---~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 218 -P---SYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp -C---SSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred -C---hhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 1 2335566666665655566555 244566666666654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.6e-19 Score=170.65 Aligned_cols=148 Identities=20% Similarity=0.154 Sum_probs=69.2
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
+++++.++++++.+..+|..+. +++++|++++|.+..+ |..+.++++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4445555555555555554432 3455555555555443 23345555555555555555544432 445555555555
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+|.+.. +|..+..+++|+.|++..|......+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++
T Consensus 86 ~N~l~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 86 HNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---LPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp SSCCSS---CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTT
T ss_pred CCcCCc---CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---cChhhcccccCCCEEECCC
Confidence 554443 33344444444444444444332223334444445555544444432 1122234445555555544
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.7e-19 Score=167.17 Aligned_cols=204 Identities=18% Similarity=0.131 Sum_probs=116.6
Q ss_pred CCCCchhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCc-cccCCc-cccccccccEEeccc-cccccccCC
Q 009315 217 KPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTN-IATLPK-SIWKSSTLRHLYMSD-IRFQLSAQK 292 (537)
Q Consensus 217 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~~~ 292 (537)
++.+|. +. .+|++|++++|.+..+|. .+.++++|++|++++|+ ++.+|. .+.++++|++|++++ |.+.. ..
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~ 97 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--ID 97 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--EC
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cC
Confidence 556665 32 367777777777776665 56677777777777775 666654 566777777777776 66655 33
Q ss_pred CccCCccccccccceEEecCCCCchHHhhcCccCc---EEeEEEe-cccccHHHHHHHhccCCCcc-eEEEEeeCCCCCC
Q 009315 293 PFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLR---KLGLTFH-FESLQDQEITKWIKDLEHLE-SLMLRSVNDFLEP 367 (537)
Q Consensus 293 ~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~ 367 (537)
+..++.+++|++|++.+|.... +|. +..+++|+ .|++++| .+.. ..+..+..+++|+ .|++++ +.++.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~---i~~~~~~~l~~L~~~L~l~~-n~l~~- 170 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS---IPVNAFQGLCNETLTLKLYN-NGFTS- 170 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE---ECTTTTTTTBSSEEEEECCS-CCCCE-
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhh---cCcccccchhcceeEEEcCC-CCCcc-
Confidence 4455556666666665555443 333 44455554 5666655 4442 1112344555555 555554 22210
Q ss_pred CccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEeccc-CCCCchhhhhcC-CCccEEEeccccccCceeee
Q 009315 368 SDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSH-LSKDPMPVLGQL-KELKILRLFAHSYIGEQMTC 445 (537)
Q Consensus 368 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~ 445 (537)
+|... ... ++|+.|++++|+ +....+..++.+ ++|+.|++++|.+.+. +
T Consensus 171 ----------------------i~~~~---~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~-- 221 (239)
T 2xwt_C 171 ----------------------VQGYA---FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-P-- 221 (239)
T ss_dssp ----------------------ECTTT---TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-C--
T ss_pred ----------------------cCHhh---cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-C--
Confidence 11110 112 467777777774 664445566777 7777777777776542 1
Q ss_pred cCCCCccccEEEeccCC
Q 009315 446 QKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 446 ~~~~~~~L~~L~l~~~~ 462 (537)
...|++|+.|.+.++.
T Consensus 222 -~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 222 -SKGLEHLKELIARNTW 237 (239)
T ss_dssp -CTTCTTCSEEECTTC-
T ss_pred -hhHhccCceeeccCcc
Confidence 1256677777766653
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=2.2e-21 Score=205.20 Aligned_cols=299 Identities=16% Similarity=0.132 Sum_probs=167.7
Q ss_pred CceeeEEEcCCCCCCC-----CchhhccccccceeecCCCC--C--CccCcccCCCCCCcEEeecCC-ccccCCcccccc
Q 009315 204 YRLLRVLDLERVYKPV-----LPETIGKLRLLRHVGLRWTF--L--DSIPKSLGDLPSLETLDVKRT-NIATLPKSIWKS 273 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~-----lp~~~~~l~~L~~L~l~~~~--i--~~lp~~l~~l~~L~~L~L~~~-~l~~lp~~i~~l 273 (537)
+++|++|++++|.+.. ++.....+++|++|++++|. + ..++..+.++++|++|++++| .+..+|..+.++
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 6777777777665433 22222355677777777765 2 112222344677777777777 455666666677
Q ss_pred ccccEEecccccc-------cc---------------------ccCCCccCCccccccccceEEecCCCC-chHHhhcCc
Q 009315 274 STLRHLYMSDIRF-------QL---------------------SAQKPFVNSSLTKLQTLWGLLIGKKSR-PLNWLRNSK 324 (537)
Q Consensus 274 ~~L~~L~l~~~~~-------~~---------------------~~~~~~~~~~l~~L~~L~~~~~~~~~~-~~~~l~~l~ 324 (537)
++|++|+++.+.. .+ ...++..+..+++|++|++..+..... ....+..++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 7777777554321 00 001122223456677777666653322 222345677
Q ss_pred cCcEEeEEEecccccHHHHHHHhccCCCcceEEEEee--------CCCCCCCccccCCC-CCCCCcceEEEeeecCCc--
Q 009315 325 DLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSV--------NDFLEPSDLDFGNL-SKHKKLTELYLIGKLPRA-- 393 (537)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--------~~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~-- 393 (537)
+|+.|++.+| +.. ..++.....+++|+.|++.++ +.++. ..+..+ ..+++|+.+.+.+.....
T Consensus 315 ~L~~L~l~~~-~~~--~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~---~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 315 KLQRLWVLDY-IED--AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE---QGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp TCCEEEEEGG-GHH--HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH---HHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred CcCEEeCcCc-cCH--HHHHHHHHhCCCCCEEEEecCcccccccCCCCCH---HHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 7777777766 322 144444455777777777542 11111 111111 125677777554432111
Q ss_pred CCccccCCCCeeEEEEe--c----ccCCCC-----chhhhhcCCCccEEEeccccccCceeeecCC-CCccccEEEeccC
Q 009315 394 IDINDQLPEKLTVFTLS--L----SHLSKD-----PMPVLGQLKELKILRLFAHSYIGEQMTCQKG-WFPQLLVLKLWVL 461 (537)
Q Consensus 394 ~~~~~~~~~~L~~L~L~--~----~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~L~~L~l~~~ 461 (537)
+..+...+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++..+.. +. .+++|+.|++++|
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~-l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY-IGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH-HHHHCTTCCEEEEESC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH-HHHhchhccEeeccCC
Confidence 11111112788888888 3 334421 122366788888888866 444433222 22 3788999999888
Q ss_pred CCCceeEeC-CCcccccccccccccccCC--CccccCCCCCCCEEEEecCch
Q 009315 462 KELKRWSIE-KETMPKLRELEIRRCQKLK--NPFESTNLTGLKELTLTDMEK 510 (537)
Q Consensus 462 ~~l~~~~~~-~~~~~~L~~L~l~~c~~l~--lp~~~~~l~~L~~L~l~~c~n 510 (537)
......... ...+|+|++|++++|+... ++..+..+++|+.|++++|+.
T Consensus 467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 532221111 1458999999999999844 344556689999999999985
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=5.3e-19 Score=167.69 Aligned_cols=222 Identities=19% Similarity=0.140 Sum_probs=142.6
Q ss_pred EEEcCCCCCCCCchhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCCc-cccccccccEEecccccc
Q 009315 209 VLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRF 286 (537)
Q Consensus 209 ~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 286 (537)
+.+..+..+..+|..+. ++|++|++++|.+..+|. .+.++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45666677788887664 579999999999988875 68899999999999999986664 688899999999999988
Q ss_pred ccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCC
Q 009315 287 QLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLE 366 (537)
Q Consensus 287 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 366 (537)
.. ..+..++.+++|++|++..+......+..++.+++|+.|++++|.+... .+|..+..+++|+.|++++ +.++.
T Consensus 89 ~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~-N~l~~ 163 (276)
T 2z62_A 89 QS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSS-NKIQS 163 (276)
T ss_dssp CE--ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCS-SCCCE
T ss_pred Cc--cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCC-CCCCc
Confidence 77 5566778888888888777766544444566677777777776666532 2355566666666666665 32321
Q ss_pred CCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCee-EEEEecccCCCCchhhhhcCCCccEEEeccccccCceeee
Q 009315 367 PSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLT-VFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTC 445 (537)
Q Consensus 367 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 445 (537)
.... .+..+..+ +.+. .|++++|.+.+..+ ......+|+.|++++|.+.+.. ..
T Consensus 164 ~~~~----------------------~~~~l~~L-~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~-~~ 218 (276)
T 2z62_A 164 IYCT----------------------DLRVLHQM-PLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVP-DG 218 (276)
T ss_dssp ECGG----------------------GGHHHHTC-TTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCC-TT
T ss_pred CCHH----------------------Hhhhhhhc-cccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecC-Hh
Confidence 1110 11111111 2222 56666666653333 2223346666666666665432 22
Q ss_pred cCCCCccccEEEeccCC
Q 009315 446 QKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 446 ~~~~~~~L~~L~l~~~~ 462 (537)
.+..+++|+.|++++|+
T Consensus 219 ~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTTCCSCCEEECCSSC
T ss_pred HhcccccccEEEccCCc
Confidence 24556666666666653
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.6e-18 Score=166.83 Aligned_cols=205 Identities=16% Similarity=0.081 Sum_probs=156.1
Q ss_pred EEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccc
Q 009315 210 LDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLS 289 (537)
Q Consensus 210 L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 289 (537)
+.+..+.+... .....+++|++|+++++.+..+| .+..+++|++|++++|.++.++. +..+++|++|++++|.+..
T Consensus 24 ~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 24 IAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp HHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-
T ss_pred HHhCCCCcCce-ecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-
Confidence 34444444443 23567899999999999999998 58999999999999999998887 9999999999999999876
Q ss_pred cCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCc
Q 009315 290 AQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSD 369 (537)
Q Consensus 290 ~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 369 (537)
+ ..+..+++|++|++.+|.... ++ .+..+++|+.|++++|.+... +. +..+++|+.|++++ +.++...
T Consensus 100 --~-~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~----~~-l~~l~~L~~L~l~~-n~l~~~~- 167 (308)
T 1h6u_A 100 --V-SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI----SP-LAGLTNLQYLSIGN-AQVSDLT- 167 (308)
T ss_dssp --C-GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC----GG-GGGCTTCCEEECCS-SCCCCCG-
T ss_pred --c-hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC----cc-ccCCCCccEEEccC-CcCCCCh-
Confidence 3 357888888888888777654 33 377888888888888877642 22 67777888888876 3332111
Q ss_pred cccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCC
Q 009315 370 LDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGW 449 (537)
Q Consensus 370 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 449 (537)
.+..+ ++|+.|++++|.+.+.. .+..+++|+.|++++|.+.+..+ +..
T Consensus 168 --------------------------~l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~---l~~ 215 (308)
T 1h6u_A 168 --------------------------PLANL-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP---LAN 215 (308)
T ss_dssp --------------------------GGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG---GTT
T ss_pred --------------------------hhcCC-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCcccc---ccC
Confidence 11223 78999999999887543 38889999999999998876542 678
Q ss_pred CccccEEEeccCC
Q 009315 450 FPQLLVLKLWVLK 462 (537)
Q Consensus 450 ~~~L~~L~l~~~~ 462 (537)
+++|+.|++++|+
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 8999999998874
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=9.7e-19 Score=162.08 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=133.4
Q ss_pred eecCCCCCCccCcccCCCCCCcEEeecCCccccCCc-cccccccccEEeccccc-cccccCCCccCCccccccccceEEe
Q 009315 233 VGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIR-FQLSAQKPFVNSSLTKLQTLWGLLI 310 (537)
Q Consensus 233 L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~L~~~~~ 310 (537)
+.+....++.+|. +. .+|++|++++|+++.+|. .+..+++|++|++++|. +.. ..+..++.++
T Consensus 16 ~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~--i~~~~f~~l~---------- 80 (239)
T 2xwt_C 16 FRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ--LESHSFYNLS---------- 80 (239)
T ss_dssp TEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE--ECTTTEESCT----------
T ss_pred ceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce--eCHhHcCCCc----------
Confidence 3333334777887 43 488899999888887766 67788888888888886 555 3333444444
Q ss_pred cCCCCchHHhhcCccCcEEeEEE-ecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeee
Q 009315 311 GKKSRPLNWLRNSKDLRKLGLTF-HFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGK 389 (537)
Q Consensus 311 ~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~ 389 (537)
+|+.|++++ |.+.. ..+..+..+++|+.|++++|. ++...
T Consensus 81 --------------~L~~L~l~~~n~l~~---i~~~~f~~l~~L~~L~l~~n~-l~~lp--------------------- 121 (239)
T 2xwt_C 81 --------------KVTHIEIRNTRNLTY---IDPDALKELPLLKFLGIFNTG-LKMFP--------------------- 121 (239)
T ss_dssp --------------TCCEEEEEEETTCCE---ECTTSEECCTTCCEEEEEEEC-CCSCC---------------------
T ss_pred --------------CCcEEECCCCCCeeE---cCHHHhCCCCCCCEEeCCCCC-Ccccc---------------------
Confidence 455555554 44432 112335566666666666632 22110
Q ss_pred cCCcCCccccCCCCeeEEEEecc-cCCCCchhhhhcCCCcc-EEEeccccccCceeeecCCCCccccEEEeccCCCCcee
Q 009315 390 LPRAIDINDQLPEKLTVFTLSLS-HLSKDPMPVLGQLKELK-ILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRW 467 (537)
Q Consensus 390 ~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 467 (537)
. +..+..+ ..|+.|++++| .+....+..++.+++|+ .|++++|.+. ..+...+.. ++|+.|++++|+.++.+
T Consensus 122 --~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 122 --D-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp --C-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEE
T ss_pred --c-ccccccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccC
Confidence 0 1111111 22447788877 66655555677888888 8888888776 333332344 78888888887656665
Q ss_pred Ee-CCCcc-cccccccccccccCCCccccCCCCCCCEEEEecCc
Q 009315 468 SI-EKETM-PKLRELEIRRCQKLKNPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 468 ~~-~~~~~-~~L~~L~l~~c~~l~lp~~~~~l~~L~~L~l~~c~ 509 (537)
+. .+..+ ++|+.|++++|+...+|.. .+++|+.|+++++.
T Consensus 196 ~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 43 34566 8888888888877666654 57788888888764
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=8.3e-20 Score=178.59 Aligned_cols=203 Identities=16% Similarity=0.134 Sum_probs=153.7
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCc--cCcccCCCCCCcEEeecCCccc-cCCccccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDS--IPKSLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l 281 (537)
+.+++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67999999998887777777889999999999998753 7777889999999999999887 67788889999999999
Q ss_pred ccc-ccccccCCCccCCccccccccceEEe-cCCCC-chHHhhcCc-cCcEEeEEEec--ccccHHHHHHHhccCCCcce
Q 009315 282 SDI-RFQLSAQKPFVNSSLTKLQTLWGLLI-GKKSR-PLNWLRNSK-DLRKLGLTFHF--ESLQDQEITKWIKDLEHLES 355 (537)
Q Consensus 282 ~~~-~~~~~~~~~~~~~~l~~L~~L~~~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~~~l~~l~~L~~ 355 (537)
++| .+.. ..++..++.+++|++|++.+| ..... ++..+..++ +|+.|++++|. ++. ..++..+..+++|+.
T Consensus 150 ~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 150 SGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVH 226 (336)
T ss_dssp TTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSE
T ss_pred CCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH--HHHHHHHhhCCCCCE
Confidence 999 4553 225566788999999999988 66543 577788999 99999999994 442 278888889999999
Q ss_pred EEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEeccc-CCCCchhhhhcCCCccEEEec
Q 009315 356 LMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSH-LSKDPMPVLGQLKELKILRLF 434 (537)
Q Consensus 356 L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~L~ 434 (537)
|++++|..++.... ..+ ..+ ++|+.|++++|. +.......++.+++|+.|+++
T Consensus 227 L~l~~~~~l~~~~~---~~l----------------------~~l-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 227 LDLSDSVMLKNDCF---QEF----------------------FQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp EECTTCTTCCGGGG---GGG----------------------GGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCCCcCCHHHH---HHH----------------------hCC-CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 99998553432211 111 222 667777777774 222222356677777777777
Q ss_pred cc
Q 009315 435 AH 436 (537)
Q Consensus 435 ~~ 436 (537)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 77
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1e-18 Score=166.47 Aligned_cols=202 Identities=17% Similarity=0.081 Sum_probs=147.4
Q ss_pred hhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccC-CccccccccccEEeccccccccccCCCccCCcccc
Q 009315 223 TIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTK 301 (537)
Q Consensus 223 ~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 301 (537)
.++++++|+.++++++.+..+|..+. +++++|++++|.++.+ |..+..+++|++|++++|.+.. ++. .+.+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQV-DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---EEC-CSCCTT
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc---ccC-CCCCCc
Confidence 36788999999999999999998775 7999999999999865 5678999999999999998877 333 267788
Q ss_pred ccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCc
Q 009315 302 LQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKL 381 (537)
Q Consensus 302 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L 381 (537)
|++|++..|... .+|..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++ |.++...+
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~l~~L~~L~L~~-N~l~~~~~------------ 141 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS---LPLGALRGLGELQELYLKG-NELKTLPP------------ 141 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC---CCSSTTTTCTTCCEEECTT-SCCCCCCT------------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc---cCHHHHcCCCCCCEEECCC-CCCCccCh------------
Confidence 888888777665 455566777777777777777663 2224466677777777766 33322111
Q ss_pred ceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccC
Q 009315 382 TELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVL 461 (537)
Q Consensus 382 ~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (537)
..+ ..+ ++|+.|++++|++....+..+..+++|+.|+|++|.+.. .+.. +...++|+.|++.+|
T Consensus 142 ----------~~~---~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~-~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 142 ----------GLL---TPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG-FFGSHLLPFAFLHGN 205 (290)
T ss_dssp ----------TTT---TTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTT-TTTTCCCSEEECCSC
T ss_pred ----------hhc---ccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChh-hcccccCCeEEeCCC
Confidence 111 122 788888888888886666667888888888888888864 2332 556678888888887
Q ss_pred CC
Q 009315 462 KE 463 (537)
Q Consensus 462 ~~ 463 (537)
+.
T Consensus 206 p~ 207 (290)
T 1p9a_G 206 PW 207 (290)
T ss_dssp CB
T ss_pred Cc
Confidence 53
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=4.1e-20 Score=184.30 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=50.5
Q ss_pred CceeeEEEcCCCCCCC-----CchhhccccccceeecCCCCCC----ccCccc-------CCCCCCcEEeecCCcccc--
Q 009315 204 YRLLRVLDLERVYKPV-----LPETIGKLRLLRHVGLRWTFLD----SIPKSL-------GDLPSLETLDVKRTNIAT-- 265 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~----~lp~~l-------~~l~~L~~L~L~~~~l~~-- 265 (537)
+++|++|+|++|.+.. ++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5667777777665543 2233556667777777665443 233333 566677777777766653
Q ss_pred ---CCccccccccccEEeccccccc
Q 009315 266 ---LPKSIWKSSTLRHLYMSDIRFQ 287 (537)
Q Consensus 266 ---lp~~i~~l~~L~~L~l~~~~~~ 287 (537)
+|..+.++++|++|++++|.+.
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCC
Confidence 5556666667777777666654
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=3.3e-20 Score=196.05 Aligned_cols=295 Identities=17% Similarity=0.100 Sum_probs=182.5
Q ss_pred CceeeEEEcCCC-CCCCCchhhccccccceeecCCCC-------CCccCcccCCCCCCcEE-eecCCccccCCccccccc
Q 009315 204 YRLLRVLDLERV-YKPVLPETIGKLRLLRHVGLRWTF-------LDSIPKSLGDLPSLETL-DVKRTNIATLPKSIWKSS 274 (537)
Q Consensus 204 ~~~L~~L~L~~~-~~~~lp~~~~~l~~L~~L~l~~~~-------i~~lp~~l~~l~~L~~L-~L~~~~l~~lp~~i~~l~ 274 (537)
+++|++|+++++ .++.+|..+..+++|++|++..+. +..++..+.++++|+.| .+.+.....+|..+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 455555555544 233344445555555555543321 22333345555566655 343333335565566789
Q ss_pred cccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEE---------ecccccHHHHHH
Q 009315 275 TLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTF---------HFESLQDQEITK 345 (537)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~---------~~~~~~~~~~~~ 345 (537)
+|++|++++|.+.. ..+...++.+++|++|++.++.....++.....+++|+.|++.. +.++.. .+..
T Consensus 290 ~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~--~l~~ 366 (594)
T 2p1m_B 290 RLTTLNLSYATVQS-YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ--GLVS 366 (594)
T ss_dssp TCCEEECTTCCCCH-HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH--HHHH
T ss_pred CCCEEEccCCCCCH-HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH--HHHH
Confidence 99999999998654 22344467889999999987722222333344689999999954 334431 4444
Q ss_pred HhccCCCcceEEEEeeCCCCCCCccccCCC-CCCCCcceEEEe--e-----ecCCcC-----Cc-cccCCCCeeEEEEec
Q 009315 346 WIKDLEHLESLMLRSVNDFLEPSDLDFGNL-SKHKKLTELYLI--G-----KLPRAI-----DI-NDQLPEKLTVFTLSL 411 (537)
Q Consensus 346 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~L~~l~l~--~-----~~~~~~-----~~-~~~~~~~L~~L~L~~ 411 (537)
....+++|+.|.+.+ +.++... +..+ ..+++|+.+++. + .+...+ .. +..+ ++|+.|++++
T Consensus 367 l~~~~~~L~~L~~~~-~~l~~~~---~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~L~~L~L~~ 441 (594)
T 2p1m_B 367 VSMGCPKLESVLYFC-RQMTNAA---LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC-KDLRRLSLSG 441 (594)
T ss_dssp HHHHCTTCCEEEEEE-SCCCHHH---HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC-TTCCEEECCS
T ss_pred HHHhchhHHHHHHhc-CCcCHHH---HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC-CCccEEeecC
Confidence 444589999997655 5554321 1222 236889999998 3 121100 00 1233 7999999977
Q ss_pred ccCCCCchhhhhc-CCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCcee-EeCCCcccccccccccccccCC
Q 009315 412 SHLSKDPMPVLGQ-LKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRW-SIEKETMPKLRELEIRRCQKLK 489 (537)
Q Consensus 412 ~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~ 489 (537)
.+++..+..++. +++|+.|+|++|.+++..+.....++++|+.|++++|+..... ......+++|+.|++++|+...
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 666555666666 9999999999999866544332256899999999999763221 1233568999999999998843
Q ss_pred -Ccccc-CCCCCCCEEEEec
Q 009315 490 -NPFES-TNLTGLKELTLTD 507 (537)
Q Consensus 490 -lp~~~-~~l~~L~~L~l~~ 507 (537)
....+ ..+|.|+...+..
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECS
T ss_pred HHHHHHHHhCCCCEEEEecC
Confidence 22223 5568887666654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=7.5e-20 Score=182.44 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=73.7
Q ss_pred CceeeEEEcCCCCCCC----Cchhh-------ccccccceeecCCCCCCc-----cCcccCCCCCCcEEeecCCccc---
Q 009315 204 YRLLRVLDLERVYKPV----LPETI-------GKLRLLRHVGLRWTFLDS-----IPKSLGDLPSLETLDVKRTNIA--- 264 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~----lp~~~-------~~l~~L~~L~l~~~~i~~-----lp~~l~~l~~L~~L~L~~~~l~--- 264 (537)
+++|++|+|+++.+.. +|..+ ..+++|++|++++|.+.. +|..+.++++|++|++++|.++
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 5566666666544332 23332 455666666666665543 4555556666666666666554
Q ss_pred --cCCcccccc---------ccccEEeccccccccccCCC---ccCCccccccccceEEecCCC-----CchHHhhcCcc
Q 009315 265 --TLPKSIWKS---------STLRHLYMSDIRFQLSAQKP---FVNSSLTKLQTLWGLLIGKKS-----RPLNWLRNSKD 325 (537)
Q Consensus 265 --~lp~~i~~l---------~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~~~~~~~~~-----~~~~~l~~l~~ 325 (537)
.++..+..+ ++|++|++++|.+.. ...+ ..+..+++|++|++..|.... ..+..+..+++
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 122223333 566666666665542 0122 233344455555554444331 01113444455
Q ss_pred CcEEeEEEeccccc-HHHHHHHhccCCCcceEEEEe
Q 009315 326 LRKLGLTFHFESLQ-DQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 326 L~~L~l~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~ 360 (537)
|+.|++++|.++.. ...++..+..+++|+.|+|++
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 55555555444210 013444444445555555544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=160.78 Aligned_cols=201 Identities=14% Similarity=0.030 Sum_probs=100.6
Q ss_pred ccceeecCCCCCC-ccCccc--CCCCCCcEEeecCCcccc-CC----ccccccccccEEeccccccccccCCCccCCccc
Q 009315 229 LLRHVGLRWTFLD-SIPKSL--GDLPSLETLDVKRTNIAT-LP----KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLT 300 (537)
Q Consensus 229 ~L~~L~l~~~~i~-~lp~~l--~~l~~L~~L~L~~~~l~~-lp----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 300 (537)
+|++|++++|.+. ..|..+ +++++|++|++++|.++. .| ..+..+++|++|++++|.+.. ..+..++.++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~ 169 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA--FSCEQVRAFP 169 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC--CCTTSCCCCT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch--hhHHHhccCC
Confidence 3444444444442 233333 444444444444444431 11 122334444444444444433 3334444444
Q ss_pred cccccceEEecCCCC--c--hHHhhcCccCcEEeEEEecccccHHHHHH-HhccCCCcceEEEEeeCCCCCCCccccCCC
Q 009315 301 KLQTLWGLLIGKKSR--P--LNWLRNSKDLRKLGLTFHFESLQDQEITK-WIKDLEHLESLMLRSVNDFLEPSDLDFGNL 375 (537)
Q Consensus 301 ~L~~L~~~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 375 (537)
+|++|++.+|...+. + +..++.+++|++|++++|.++.. ...+. .+..+++|+.|++++ |.+++..+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhc
Confidence 444444444432210 1 11134566777777777776521 12222 356788999999988 54544322222222
Q ss_pred CCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccE
Q 009315 376 SKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLV 455 (537)
Q Consensus 376 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 455 (537)
.. +++|++|++++|.+. .+|..+. ++|+.|+|++|.+++. +. ...+++|+.
T Consensus 248 ~~-----------------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~--~~~l~~L~~ 298 (310)
T 4glp_A 248 MW-----------------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ--PDELPEVDN 298 (310)
T ss_dssp CC-----------------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC--TTSCCCCSC
T ss_pred cC-----------------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch--hhhCCCccE
Confidence 11 256667777777666 3444442 6777777777776653 11 455677777
Q ss_pred EEeccCC
Q 009315 456 LKLWVLK 462 (537)
Q Consensus 456 L~l~~~~ 462 (537)
|++++|+
T Consensus 299 L~L~~N~ 305 (310)
T 4glp_A 299 LTLDGNP 305 (310)
T ss_dssp EECSSTT
T ss_pred EECcCCC
Confidence 7777664
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=6.2e-19 Score=174.03 Aligned_cols=235 Identities=14% Similarity=0.066 Sum_probs=126.6
Q ss_pred CceeeEEEcCCCCCCCCc-----hhhcccc-ccceeecCCCCCCcc-CcccCCC-----CCCcEEeecCCccccCC-cc-
Q 009315 204 YRLLRVLDLERVYKPVLP-----ETIGKLR-LLRHVGLRWTFLDSI-PKSLGDL-----PSLETLDVKRTNIATLP-KS- 269 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~i~~l-p~~l~~l-----~~L~~L~L~~~~l~~lp-~~- 269 (537)
.++|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 345788888877776664 4566677 788888888777544 3334443 77888888888777433 32
Q ss_pred ---cccc-ccccEEeccccccccccCCCcc----CCc-cccccccceEEecCCCC----chHHhhcCc-cCcEEeEEEec
Q 009315 270 ---IWKS-STLRHLYMSDIRFQLSAQKPFV----NSS-LTKLQTLWGLLIGKKSR----PLNWLRNSK-DLRKLGLTFHF 335 (537)
Q Consensus 270 ---i~~l-~~L~~L~l~~~~~~~~~~~~~~----~~~-l~~L~~L~~~~~~~~~~----~~~~l~~l~-~L~~L~l~~~~ 335 (537)
+..+ ++|++|++++|.+.. ..+.. +.. .++|++|++.+|..... ++..+..++ +|+.|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSS--KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGG--SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCCc--HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3333 677888887777665 22222 222 23556665555544422 222233333 55555555555
Q ss_pred cccc-HHHHHHHhccC-CCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEeccc
Q 009315 336 ESLQ-DQEITKWIKDL-EHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSH 413 (537)
Q Consensus 336 ~~~~-~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 413 (537)
+... ...+...+..+ ++|+.|++++ |.++..... .++ ..+...+++|+.|++++|.
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~------------------~l~---~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYA------------------ELA---YIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHH------------------HHH---HHHHHSCTTCCEEECCSSC
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHH------------------HHH---HHHhcCCCCceEEECcCCC
Confidence 4421 11233334444 2555555555 222110000 000 1112223577788888877
Q ss_pred CCCCchh----hhhcCCCccEEEeccccccCcee------eecCCCCccccEEEeccCC
Q 009315 414 LSKDPMP----VLGQLKELKILRLFAHSYIGEQM------TCQKGWFPQLLVLKLWVLK 462 (537)
Q Consensus 414 ~~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~------~~~~~~~~~L~~L~l~~~~ 462 (537)
+.+..+. .+..+++|+.|++++|.+.+... ...+..+++|+.|++++|+
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 7665442 33556777888887776432211 1124566677777777764
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=4.5e-17 Score=159.81 Aligned_cols=237 Identities=15% Similarity=0.049 Sum_probs=163.9
Q ss_pred eEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCch-hhccccccceeecCCCCC-CccCc-ccCCC
Q 009315 174 HSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFL-DSIPK-SLGDL 250 (537)
Q Consensus 174 r~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i-~~lp~-~l~~l 250 (537)
+++...++....+|... .++++.|+|++|.++.+|. +|.++++|++|+|++|.+ +.+|. .+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-------------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-------------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCCSCCTTC-------------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCCCCCccCcCc-------------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 56677777777888641 2568999999999999975 689999999999999987 56764 46788
Q ss_pred CCCcE-EeecCCccccCC-ccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCch-HHhhcC-ccC
Q 009315 251 PSLET-LDVKRTNIATLP-KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL-NWLRNS-KDL 326 (537)
Q Consensus 251 ~~L~~-L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l-~~L 326 (537)
++|++ +.+++|+++.+| ..+..+++|++|++++|.+.. ..+..+....++..|++..+.....++ ..+..+ ..+
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS--CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred hhhhhhhcccCCcccccCchhhhhcccccccccccccccc--CCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 88775 566678898774 567899999999999999877 455555566677777765543332332 234444 357
Q ss_pred cEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeE
Q 009315 327 RKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTV 406 (537)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~ 406 (537)
+.|++++|.+. .++.......+|+.|.+.+++.++..... .+ ..+ ++|+.
T Consensus 157 ~~L~L~~N~i~----~i~~~~f~~~~L~~l~l~~~n~l~~i~~~----------------------~f---~~l-~~L~~ 206 (350)
T 4ay9_X 157 VILWLNKNGIQ----EIHNSAFNGTQLDELNLSDNNNLEELPND----------------------VF---HGA-SGPVI 206 (350)
T ss_dssp EEEECCSSCCC----EECTTSSTTEEEEEEECTTCTTCCCCCTT----------------------TT---TTE-ECCSE
T ss_pred hhhcccccccc----CCChhhccccchhHHhhccCCcccCCCHH----------------------Hh---ccC-cccch
Confidence 77888888776 34444445567777777654544322211 11 222 78999
Q ss_pred EEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEecc
Q 009315 407 FTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWV 460 (537)
Q Consensus 407 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 460 (537)
|++++|+++..++.. +.+|+.|.+.++......|. +..|++|+.+++.+
T Consensus 207 LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 207 LDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred hhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 999999988544433 55666666665554444443 78899999999865
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=6.1e-17 Score=151.05 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=74.5
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCCc-cccccccccEEecc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMS 282 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~ 282 (537)
...++++++++.+..+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 346788888888888887665 578888888888876654 57888888888888888886554 46788888888888
Q ss_pred ccccccccCCCccCCccccccccceEEecC
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGK 312 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~ 312 (537)
+|.+.. ..+..++.+++|++|++.+|..
T Consensus 92 ~n~l~~--~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 92 NNQLAS--LPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp TSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcccc--cChhHhcccCCCCEEEcCCCcC
Confidence 887766 4444455555555555444433
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=158.04 Aligned_cols=200 Identities=17% Similarity=0.102 Sum_probs=111.0
Q ss_pred ccccEEeccccccccccCCCccC--CccccccccceEEecCCCCch----HHhhcCccCcEEeEEEecccccHHHHHHHh
Q 009315 274 STLRHLYMSDIRFQLSAQKPFVN--SSLTKLQTLWGLLIGKKSRPL----NWLRNSKDLRKLGLTFHFESLQDQEITKWI 347 (537)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~--~~l~~L~~L~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 347 (537)
++|++|++++|.+.+ ..|..+ +.+++|++|++..|......+ ..+..+++|+.|++++|.+.. ..+..+
T Consensus 91 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~ 165 (310)
T 4glp_A 91 SRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA---FSCEQV 165 (310)
T ss_dssp SCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC---CCTTSC
T ss_pred CceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch---hhHHHh
Confidence 345555555555444 333333 445555555555444433211 233456666666666666653 333445
Q ss_pred ccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchh----hhh
Q 009315 348 KDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMP----VLG 423 (537)
Q Consensus 348 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~l~ 423 (537)
..+++|++|++++|. +.+..... .+..+ ..+ ++|++|++++|.++. .+. .++
T Consensus 166 ~~l~~L~~L~Ls~N~-l~~~~~~~------------------~~~~~---~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 166 RAFPALTSLDLSDNP-GLGERGLM------------------AALCP---HKF-PAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CCCTTCCEEECCSCT-TCHHHHHH------------------TTSCT---TSS-CCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred ccCCCCCEEECCCCC-Cccchhhh------------------HHHhh---hcC-CCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 566666666666632 21100000 00000 122 577777777777752 222 246
Q ss_pred cCCCccEEEeccccccCceeeecCCCC---ccccEEEeccCCCCceeEeCCCcccccccccccccccCCCccccCCCCCC
Q 009315 424 QLKELKILRLFAHSYIGEQMTCQKGWF---PQLLVLKLWVLKELKRWSIEKETMPKLRELEIRRCQKLKNPFESTNLTGL 500 (537)
Q Consensus 424 ~l~~L~~L~L~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~lp~~~~~l~~L 500 (537)
.+++|++|+|++|.+.+..|.. +..+ ++|++|++++| .++.++... +++|+.|++++|....+|. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSNRLNRAPQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSCCCCSCCC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCCcCCCCch-hhhCCCc
Confidence 7778888888888776654432 3333 67888888777 344554332 3788888888887666654 5677888
Q ss_pred CEEEEec
Q 009315 501 KELTLTD 507 (537)
Q Consensus 501 ~~L~l~~ 507 (537)
+.|++++
T Consensus 297 ~~L~L~~ 303 (310)
T 4glp_A 297 DNLTLDG 303 (310)
T ss_dssp SCEECSS
T ss_pred cEEECcC
Confidence 8888887
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1.5e-18 Score=171.24 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=174.4
Q ss_pred EEcCCCCCCCC-chhhccccccceeecCCCCCCccC-----cccCCCC-CCcEEeecCCccccC-Ccccccc-----ccc
Q 009315 210 LDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIP-----KSLGDLP-SLETLDVKRTNIATL-PKSIWKS-----STL 276 (537)
Q Consensus 210 L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-----~~l~~l~-~L~~L~L~~~~l~~l-p~~i~~l-----~~L 276 (537)
++++.+.+... |..+...++|++|++++|.++.++ ..+.+++ +|++|++++|.++.. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 56777766654 555556666999999999998776 5677888 899999999998844 5556665 899
Q ss_pred cEEeccccccccccCCCcc----CCcc-ccccccceEEecCCCCchHHhh----c-CccCcEEeEEEeccccc-HHHHHH
Q 009315 277 RHLYMSDIRFQLSAQKPFV----NSSL-TKLQTLWGLLIGKKSRPLNWLR----N-SKDLRKLGLTFHFESLQ-DQEITK 345 (537)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~----~~~l-~~L~~L~~~~~~~~~~~~~~l~----~-l~~L~~L~l~~~~~~~~-~~~~~~ 345 (537)
++|++++|.+.. ..+.. +..+ ++|++|++..|......+..+. . .++|++|++++|.+... ...++.
T Consensus 83 ~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 83 TSLNLSGNFLSY--KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CEEECCSSCGGG--SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred cEEECcCCcCCh--HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 999999999876 33333 3333 7888888888877655444433 3 35888888888876632 235566
Q ss_pred HhccCC-CcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCC----chh
Q 009315 346 WIKDLE-HLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKD----PMP 420 (537)
Q Consensus 346 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~ 420 (537)
.+...+ +|++|++++ +.++......+ ...+...|++|+.|++++|.+.+. ++.
T Consensus 161 ~l~~~~~~L~~L~Ls~-n~l~~~~~~~l---------------------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 161 ILAAIPANVNSLNLRG-NNLASKNCAEL---------------------AKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp HHHTSCTTCCEEECTT-SCGGGSCHHHH---------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred HHhcCCccccEeeecC-CCCchhhHHHH---------------------HHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 666665 788888877 33322111000 001122335899999999998753 445
Q ss_pred hhhc-CCCccEEEeccccccCcee---eecCCCCccccEEEeccCC---C----CceeEeCCCcccccccccccccccCC
Q 009315 421 VLGQ-LKELKILRLFAHSYIGEQM---TCQKGWFPQLLVLKLWVLK---E----LKRWSIEKETMPKLRELEIRRCQKLK 489 (537)
Q Consensus 421 ~l~~-l~~L~~L~L~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~---~----l~~~~~~~~~~~~L~~L~l~~c~~l~ 489 (537)
.+.. .++|++|+|++|.+.+..+ ...+..+++|+.|++++|. . +..+......+++|+.|++++|+...
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 5555 4599999999999876433 2235778999999999885 1 12223345577889999999998654
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.6e-16 Score=148.15 Aligned_cols=152 Identities=22% Similarity=0.199 Sum_probs=112.5
Q ss_pred CceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCc-ccC
Q 009315 171 ERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPK-SLG 248 (537)
Q Consensus 171 ~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~l~ 248 (537)
...+.+...++....+|... .+.++.|+++++.+..++ ..+.++++|++|++++|.+..++. .+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCeEEecCCCCccccCCCC-------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 34566777777777777541 357899999999888875 478999999999999999977754 478
Q ss_pred CCCCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCc
Q 009315 249 DLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLR 327 (537)
Q Consensus 249 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 327 (537)
++++|++|++++|.++.+|. .+..+++|++|++++|.+.. ..+..++.+++|++|++..|......+..++.+++|+
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC--cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 99999999999999997765 56889999999999998887 4555566777777777666655533333455555555
Q ss_pred EEeEEEeccc
Q 009315 328 KLGLTFHFES 337 (537)
Q Consensus 328 ~L~l~~~~~~ 337 (537)
.|++++|.+.
T Consensus 159 ~L~L~~N~l~ 168 (251)
T 3m19_A 159 TLSLSTNQLQ 168 (251)
T ss_dssp EEECCSSCCS
T ss_pred EEECCCCcCC
Confidence 5555555444
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1.1e-16 Score=152.62 Aligned_cols=167 Identities=20% Similarity=0.153 Sum_probs=105.5
Q ss_pred CcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccC
Q 009315 169 HLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLG 248 (537)
Q Consensus 169 ~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~ 248 (537)
.+++|+.+.+.++....++. +. .+++|++|++++|.+..++. +..+++|++|++++|.+..+|. +.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~----------~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQ----------YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GG----------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred hcCcccEEEccCCCcccChh--Hh----------cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hc
Confidence 35556666666555544432 22 25667777777777666655 6677777777777777766654 66
Q ss_pred CCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcE
Q 009315 249 DLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRK 328 (537)
Q Consensus 249 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 328 (537)
.+++|++|++++|.++.++ .+..+++|++|++++|.+.. + ..++.+++|+.|++.+|......+ +..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc---c-hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 7777777777777766653 56667777777777776665 2 456666667777666665553322 666666777
Q ss_pred EeEEEecccccHHHHHHHhccCCCcceEEEEee
Q 009315 329 LGLTFHFESLQDQEITKWIKDLEHLESLMLRSV 361 (537)
Q Consensus 329 L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 361 (537)
|++++|.+.. ++ .+..+++|+.|++++|
T Consensus 183 L~L~~N~i~~----l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 183 LYLSKNHISD----LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCSSCCCB----CG-GGTTCTTCSEEEEEEE
T ss_pred EECCCCcCCC----Ch-hhccCCCCCEEECcCC
Confidence 7766666653 22 2566666666666663
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=5e-17 Score=169.81 Aligned_cols=192 Identities=20% Similarity=0.193 Sum_probs=119.6
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecccc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 284 (537)
..+..+.++.+.+..++ .+..+++|+.|++++|.+..+|. +..+++|+.|+|++|.+..+|. +..+++|++|++++|
T Consensus 21 ~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 33444455544444442 24566677777777777766653 6667777777777777766654 667777777777777
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCC
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDF 364 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 364 (537)
.+.. ++ .+..+++|+.|++..|.... + ..+..+++|+.|++++|.+.. + ..+..+++|+.|+|++ |.+
T Consensus 98 ~l~~---l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~-N~l 165 (605)
T 1m9s_A 98 KIKD---LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD----I-TVLSRLTKLDTLSLED-NQI 165 (605)
T ss_dssp CCCC---CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC----C-GGGGSCTTCSEEECCS-SCC
T ss_pred CCCC---Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC----c-hhhcccCCCCEEECcC-CcC
Confidence 6655 22 46666666666666665543 2 346677777777777777664 2 4467777788887776 333
Q ss_pred CCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 365 LEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 365 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
.+..+ +..+ ++|+.|+|++|.+.+. +.++.+++|+.|+|++|.+.+.
T Consensus 166 ~~~~~---------------------------l~~l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP---------------------------LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG---------------------------GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCchh---------------------------hccC-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 32111 1222 6777777777777642 3577777777777777777553
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.4e-16 Score=164.61 Aligned_cols=190 Identities=17% Similarity=0.141 Sum_probs=138.7
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecccc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 284 (537)
.+|++|+++++.+..+|..+. ++|++|++++|.+..+| ..+++|++|++++|+++.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 378899999888888887663 78999999999998888 457899999999999988887 665 8999999999
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCC
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDF 364 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 364 (537)
.+.+ +|. .+++|+.|++.+|.+.. +|. .+++|+.|++++|.+.. +|. +. ++|+.|++++ |.+
T Consensus 131 ~l~~---lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~----lp~-l~--~~L~~L~Ls~-N~L 192 (571)
T 3cvr_A 131 QLTM---LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF----LPE-LP--ESLEALDVST-NLL 192 (571)
T ss_dssp CCSC---CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC----CCC-CC--TTCCEEECCS-SCC
T ss_pred cCCC---CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC----cch-hh--CCCCEEECcC-CCC
Confidence 8877 444 57788888888777654 443 56788888888887763 344 43 7788888877 333
Q ss_pred CCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceee
Q 009315 365 LEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMT 444 (537)
Q Consensus 365 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 444 (537)
+.... +.. + + ...++.|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+.
T Consensus 193 ~~lp~--~~~-----~-----L-----------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 193 ESLPA--VPV-----R-----N-----------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SSCCC--CC-----------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred Cchhh--HHH-----h-----h-----------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 31111 000 0 0 011244599999999988 5777788899999999999998776543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1.9e-16 Score=150.90 Aligned_cols=144 Identities=17% Similarity=0.084 Sum_probs=120.5
Q ss_pred CCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEecc
Q 009315 203 GYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 203 ~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 282 (537)
++++|+.|+++++.+..++ .+..+++|++|++++|.+..++. +.++++|++|++++|.++.+|. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 3688999999999988886 48889999999999999988887 8999999999999999988764 8899999999999
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+|.+.. + ..+..+++|+.|++..|..... ..+..+++|+.|++++|.+.. ++. +..+++|+.|++++
T Consensus 121 ~n~i~~---~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~----~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 121 HNGISD---I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD----IVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp TSCCCC---C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC----CGG-GTTCTTCCEEECCS
T ss_pred CCcCCC---C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc----chh-hcCCCccCEEECCC
Confidence 998877 2 4577888888888888877643 467888888888888888774 222 77888888888887
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.6e-17 Score=145.27 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=101.1
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccc-cCCccccccccccEEecc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIA-TLPKSIWKSSTLRHLYMS 282 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~ 282 (537)
+++|+.|+++++.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++ ..|..++.+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 566777788777777776 6777777888888777666654 4777777888888777777 356677777777777777
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+|.+.. ..+..++.+++|++|++..|.....++ .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++
T Consensus 121 ~n~i~~--~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~----~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 121 HSAHDD--SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD----YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp SSBCBG--GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC----CT-TGGGCSSCCEEEECB
T ss_pred CCccCc--HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC----hH-HhccCCCCCEEEeeC
Confidence 777765 445556667777777776665222334 46667777777777776653 22 466667777777766
No 102
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.63 E-value=1.2e-16 Score=165.98 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=82.0
Q ss_pred hhhhhHHHHhcCCCcHhHHHHhh-----------hhccCCCCcccchhhHHHHHHHh--cccccccCCCCChHHHHHHHH
Q 009315 22 RDISSIWVFANKSLSPHLKACLH-----------YFRLFPKSYEVSVRRLLQLWLAE--RLETPIEENYMAPEDQVKTIF 88 (537)
Q Consensus 22 ~~i~~~L~lSY~~L~~~lk~cFl-----------~~a~Fp~~~~i~~~~Li~~Wia~--g~i~~~~~~~~~~~~~g~~~~ 88 (537)
++|.++|++||++||+++|+||+ |||+||+|+.|+ |++|+|+ ||+....... +++++|+ ||
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~-~~~~~~~-~l 434 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ-LDDEVAD-RL 434 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC-CTHHHHH-HH
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC-CHHHHHH-HH
Confidence 46999999999999999999999 999999999999 8999999 9998776343 7889888 99
Q ss_pred HHHhhccceEeeecCCCCCeeEEEcChhHHHHHhhhhhcCC
Q 009315 89 DQLELMNMIEVVKRKPDGKPKTCRVPSSLSDNLFPKAESGG 129 (537)
Q Consensus 89 ~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~~~ 129 (537)
++|+++||+++...+ ....|+|||+||++|++++.+++
T Consensus 435 ~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 435 KRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 999999999987643 34579999999999999987654
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=2e-16 Score=143.10 Aligned_cols=124 Identities=22% Similarity=0.182 Sum_probs=58.8
Q ss_pred EEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc-cCCCCCCcEEeecCCccccCCcc-ccccccccEEecccccc
Q 009315 209 VLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS-LGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYMSDIRF 286 (537)
Q Consensus 209 ~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 286 (537)
.++.+++.+..+|..+ .++|++|++++|.+..+|.. +.++++|++|++++|+++.+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4445555555555433 23555555555555555432 44555555555555555544433 34555555555555555
Q ss_pred ccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecc
Q 009315 287 QLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFE 336 (537)
Q Consensus 287 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 336 (537)
.. ..+..++.+++|++|++.+|......+..+..+++|+.|++++|.+
T Consensus 89 ~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 89 QS--LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred Cc--cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 44 2333334444444444444333322222233444444444444443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=8.6e-16 Score=160.49 Aligned_cols=170 Identities=20% Similarity=0.161 Sum_probs=139.1
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCccc
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSL 247 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l 247 (537)
..+++|+.|.+.++....+|. + ..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..+| .+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~--l----------~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l 105 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQG--I----------QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL 105 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTT--G----------GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS
T ss_pred hcCCCCCEEECcCCCCCCChH--H----------ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh
Confidence 346677777777766666552 2 337899999999999888876 889999999999999998887 58
Q ss_pred CCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCc
Q 009315 248 GDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLR 327 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 327 (537)
..+++|+.|+|++|.+..+| .+..+++|+.|++++|.+.. + ..++.+++|+.|++..|.+....| +..+++|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~---l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC---C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC---c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 89999999999999988875 58899999999999998877 2 568889999999999888775544 88899999
Q ss_pred EEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 328 KLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
.|++++|.+.. + ..+..+++|+.|+|++|..
T Consensus 179 ~L~Ls~N~i~~----l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 179 NLYLSKNHISD----L-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCB----C-GGGTTCTTCSEEECCSEEE
T ss_pred EEECcCCCCCC----C-hHHccCCCCCEEEccCCcC
Confidence 99999998874 2 3488899999999988543
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.3e-15 Score=136.08 Aligned_cols=150 Identities=23% Similarity=0.172 Sum_probs=100.2
Q ss_pred ceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccCcc-cCCCCCCcEEeecCCccccCCcc-ccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIPKS-LGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 281 (537)
++|++|+++++.+..++. .++.+++|++|++++|.+..+|.. +..+++|++|++++|.++.+|.. +.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 457777777777666654 356777777777777777666554 46677777777777777766554 467777777777
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEee
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSV 361 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 361 (537)
++|.+.. ..+..++.+++|++|++..|......+..+..+++|+.|++++|.+.. .+++|+.|+++.
T Consensus 108 ~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~l~~L~~~~- 174 (208)
T 2o6s_A 108 NTNQLQS--LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPGIRYLSEWI- 174 (208)
T ss_dssp CSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----------CTTTTHHHHHHH-
T ss_pred CCCcCcc--cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----------CCCCHHHHHHHH-
Confidence 7777766 444556777777777777776654444456777777777777776542 445666666665
Q ss_pred CCCCCC
Q 009315 362 NDFLEP 367 (537)
Q Consensus 362 ~~~~~~ 367 (537)
+.+++.
T Consensus 175 n~~~g~ 180 (208)
T 2o6s_A 175 NKHSGV 180 (208)
T ss_dssp HHCTTT
T ss_pred HhCCce
Confidence 334433
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=5.1e-16 Score=145.59 Aligned_cols=142 Identities=17% Similarity=0.106 Sum_probs=83.9
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
+..+..++++++.+..++ .+..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 445555566666666555 4556666666666666666665 45666666666666666666555 66666666666666
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
|.+.. ++.. .. ++|+.|++.+|.... + ..+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++
T Consensus 95 N~l~~---l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~----~~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 95 NRLKN---LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS----IV-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SCCSC---CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB----CG-GGGGCTTCCEEECTT
T ss_pred CccCC---cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC----Ch-HHccCCCCCEEECCC
Confidence 66555 2222 22 566666666555543 2 235666666666666666653 22 356666666666665
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.6e-15 Score=138.24 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=86.7
Q ss_pred ceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCccccCCcc-ccccccccEEec
Q 009315 205 RLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYM 281 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 281 (537)
+.|++|++++|.+..++. .+..+++|++|++++|.+..+ |..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456777777776666643 566777777777777777655 55677777777777777777766654 456777777777
Q ss_pred cccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecc
Q 009315 282 SDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFE 336 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 336 (537)
++|.+.. ..+..++.+++|+.|++.+|......+..+..+++|+.|++++|.+
T Consensus 112 ~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCE--eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 7777666 4556666667777777666666554445566666666666666654
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=1.4e-15 Score=157.21 Aligned_cols=189 Identities=18% Similarity=0.141 Sum_probs=142.7
Q ss_pred ceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCC
Q 009315 172 RLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLP 251 (537)
Q Consensus 172 ~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~ 251 (537)
+++.|.+.++....+|... +++|++|++++|.+..+| ..+++|++|++++|.+..+|. +.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-------------~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-------------PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-------------CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--
T ss_pred CccEEEeCCCCCCccCHhH-------------cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--
Confidence 5677777666666666531 367899999999888888 557899999999999988988 665
Q ss_pred CCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeE
Q 009315 252 SLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGL 331 (537)
Q Consensus 252 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l 331 (537)
+|++|++++|.++.+|. .+++|++|++++|.+.+ +|. .+++|+.|++.+|.... +|. +. ++|+.|++
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM---LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc---CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 89999999999998887 68899999999998876 444 57889999998888765 555 55 89999999
Q ss_pred EEecccccHHHHHHHhccCCCc-------ceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCe
Q 009315 332 TFHFESLQDQEITKWIKDLEHL-------ESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKL 404 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 404 (537)
++|.++ .+|. +.. +| +.|++++ |.++. +|..+ ..+ ++|
T Consensus 188 s~N~L~----~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~-----------------------lp~~l---~~l-~~L 232 (571)
T 3cvr_A 188 STNLLE----SLPA-VPV--RNHHSEETEIFFRCRE-NRITH-----------------------IPENI---LSL-DPT 232 (571)
T ss_dssp CSSCCS----SCCC-CC----------CCEEEECCS-SCCCC-----------------------CCGGG---GGS-CTT
T ss_pred cCCCCC----chhh-HHH--hhhcccccceEEecCC-Cccee-----------------------cCHHH---hcC-CCC
Confidence 999887 3444 333 55 8888877 43331 22222 333 889
Q ss_pred eEEEEecccCCCCchhhhhcCCC
Q 009315 405 TVFTLSLSHLSKDPMPVLGQLKE 427 (537)
Q Consensus 405 ~~L~L~~~~~~~~~~~~l~~l~~ 427 (537)
+.|++++|.+++..|..++.++.
T Consensus 233 ~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 233 CTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHH
T ss_pred CEEEeeCCcCCCcCHHHHHHhhc
Confidence 99999999999888888877644
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=1e-15 Score=143.51 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=114.2
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
+++|++|+++++.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|+++.+|.... ++|++|++++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~ 115 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN 115 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence 678888888888888887 67888888888888888888877 8888888888888888887775433 8888888888
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVN 362 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 362 (537)
|.+.. + ..++.+++|+.|++.+|.... ++ .+..+++|+.|++++|.+... ..+..+++|+.|++++|.
T Consensus 116 N~l~~---~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-----~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 116 NELRD---T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCSB---S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-----TTSTTCCCCCEEEEEEEE
T ss_pred CccCC---C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-----HHhccCCCCCEEeCCCCc
Confidence 88776 3 347888888888888877754 33 578888899999988888752 557788888888888843
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=2.3e-15 Score=134.73 Aligned_cols=130 Identities=17% Similarity=0.122 Sum_probs=110.2
Q ss_pred hhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccc
Q 009315 223 TIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKL 302 (537)
Q Consensus 223 ~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 302 (537)
....+++|++|++++|.+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. ..+..++.+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS--DKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG--GGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc--ccChhhcCCCCC
Confidence 3478899999999999999998 6999999999999999877665 78899999999999999886 567778889999
Q ss_pred cccceEEecCCCCchHHhhcCccCcEEeEEEec-ccccHHHHHHHhccCCCcceEEEEee
Q 009315 303 QTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHF-ESLQDQEITKWIKDLEHLESLMLRSV 361 (537)
Q Consensus 303 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~ 361 (537)
++|++..|......+..++.+++|+.|++++|. +. .++ .+..+++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~----~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT----DIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC----CCG-GGGGCSSCCEEECTTB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc----ccH-hhcCCCCCCEEECCCC
Confidence 999998888876677888888899999988887 55 334 5778888888888773
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=4.3e-15 Score=135.33 Aligned_cols=148 Identities=12% Similarity=0.051 Sum_probs=115.5
Q ss_pred EEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCc--hhhccccccceeecCCCCCCccCc-ccCCCC
Q 009315 175 SYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLP--ETIGKLRLLRHVGLRWTFLDSIPK-SLGDLP 251 (537)
Q Consensus 175 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~ 251 (537)
++.+.++....+|... .+.+++|++++|.+..++ ..+..+++|++|++++|.+..+|. .+.+++
T Consensus 15 ~l~~s~n~l~~iP~~~-------------~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-------------PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCC-------------CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCC-------------CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence 4555555555666431 234678899988888773 347888999999999998887765 688889
Q ss_pred CCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEe
Q 009315 252 SLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLG 330 (537)
Q Consensus 252 ~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~ 330 (537)
+|++|++++|.++.+|. .+..+++|++|++++|.+.. ..+..+..+++|+.|++.+|......|..+..+++|+.|+
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC--BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe--ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 99999999998887665 47788999999999998887 5677788888888888888887766677788888888888
Q ss_pred EEEeccc
Q 009315 331 LTFHFES 337 (537)
Q Consensus 331 l~~~~~~ 337 (537)
+++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 8888765
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=5.3e-15 Score=134.69 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=86.1
Q ss_pred eEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccC-CccccccccccEEeccccc
Q 009315 208 RVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSDIR 285 (537)
Q Consensus 208 ~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 285 (537)
+.++++++.+..+|..+. ++|+.|++++|.+..+|. .+..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 455666666666665443 456666666666655543 456666666666666666643 4556666666666666666
Q ss_pred cccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEe
Q 009315 286 FQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 286 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 360 (537)
+.. ..+..++.+++|+.|++.+|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++
T Consensus 92 l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 92 ITE--LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT---IAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCS
T ss_pred CCc--cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE---ECHHHHhCCCCCCEEEeCC
Confidence 655 344445666666666666666655555556666666666666666553 2223355566666666665
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=138.04 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=125.9
Q ss_pred eeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc--ccCCCCCCcEEeecCCccccCCc-cccccccccEEeccc
Q 009315 207 LRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK--SLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSD 283 (537)
Q Consensus 207 L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 283 (537)
-++++++++.++.+|..+. ..+++|++++|.+..++. .+.++++|++|++++|.++.++. .+.++++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3689999999999998664 457899999999988843 47899999999999999997765 789999999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
|.+.. ..+..++.+++|++|++.+|.+....|..+..+++|+.|++++|.+.. ..|..+..+++|+.|++++ |.
T Consensus 91 N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~-N~ 164 (220)
T 2v70_A 91 NRLEN--VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT---VAPGAFDTLHSLSTLNLLA-NP 164 (220)
T ss_dssp SCCCC--CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC---BCTTTTTTCTTCCEEECCS-CC
T ss_pred CccCc--cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE---ECHHHhcCCCCCCEEEecC-cC
Confidence 99987 666778899999999999888877667788889999999999888875 3366778888899998887 44
Q ss_pred C
Q 009315 364 F 364 (537)
Q Consensus 364 ~ 364 (537)
+
T Consensus 165 l 165 (220)
T 2v70_A 165 F 165 (220)
T ss_dssp E
T ss_pred C
Confidence 3
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=6.7e-15 Score=134.98 Aligned_cols=148 Identities=21% Similarity=0.144 Sum_probs=105.6
Q ss_pred eEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcc-cCCCC
Q 009315 174 HSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKS-LGDLP 251 (537)
Q Consensus 174 r~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~ 251 (537)
+++...++..+.+|.. -.++|++|+|++|.+..+ |..+..+++|++|++++|.+..+|.. +..++
T Consensus 22 ~~v~c~~~~l~~ip~~-------------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAG-------------IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp TEEECTTSCCSSCCSC-------------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CEeEccCCCcCccCCC-------------CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 4566666666666653 135678888887777776 56677888888888888888777644 57788
Q ss_pred CCcEEeecCCccccCCcc-ccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEe
Q 009315 252 SLETLDVKRTNIATLPKS-IWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLG 330 (537)
Q Consensus 252 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~ 330 (537)
+|++|++++|.++.+|.. +..+++|++|++++|.+.. +|..+..+++|++|++.+|......+..+..+++|+.|+
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS---CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc---cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 888888888888776654 5678888888888887765 566677777777777777766644445566777777777
Q ss_pred EEEeccc
Q 009315 331 LTFHFES 337 (537)
Q Consensus 331 l~~~~~~ 337 (537)
+.+|.+.
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 7776654
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.2e-14 Score=126.50 Aligned_cols=130 Identities=18% Similarity=0.058 Sum_probs=94.0
Q ss_pred CceeeEEEcCCCCCC--CCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCcccc-CCccccccccccEEe
Q 009315 204 YRLLRVLDLERVYKP--VLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIAT-LPKSIWKSSTLRHLY 280 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~ 280 (537)
.++|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 578999999998887 8888889999999999999999888 678899999999999999986 777777899999999
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCCCch---HHhhcCccCcEEeEEEec
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL---NWLRNSKDLRKLGLTFHF 335 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~ 335 (537)
+++|.+.. ...+..++.+++|++|++.+|......+ ..+..+++|+.|+++.|.
T Consensus 102 Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99998776 1111445555555555555544432222 234444444444444443
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=1.2e-15 Score=163.35 Aligned_cols=114 Identities=23% Similarity=0.245 Sum_probs=70.7
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
++.|++|+|++|.+..+|..+..+++|++|+|++|.+..+|..+++|++|++|+|++|.++.+|..+++|++|++|+|++
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHh
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWL 320 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l 320 (537)
|.+.. +|..++.+++|++|++.+|...+..|..+
T Consensus 303 N~l~~---lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 303 NMVTT---LPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SCCCC---CCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCc---cChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 65543 44455556666666555555544444444
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=2e-14 Score=131.74 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=97.8
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccCcc-c
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIPKS-L 247 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-l 247 (537)
.++|+.|.+.++....++...|.. +++|++|+|++|.+..+|. .+..+++|++|++++|.+..+|.. +
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~----------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDS----------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTT----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhC----------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 467777777777666665544443 6778888888887777764 457788888888888888777654 5
Q ss_pred CCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCccccccccceEEecCC
Q 009315 248 GDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKK 313 (537)
Q Consensus 248 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~ 313 (537)
..+++|++|++++|+++.+|..+..+++|++|++++|.+.. ..+..+..+++|+.|++.+|...
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS--IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc--cCHHHHhCCCCCCEEEeeCCCcc
Confidence 67888888888888888888888888888888888887776 44566777888888877766554
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=1.3e-14 Score=142.95 Aligned_cols=127 Identities=18% Similarity=0.171 Sum_probs=91.7
Q ss_pred eeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc-cC-CCCCCcEEeecCCccccCCc-cccccccccEEeccc
Q 009315 207 LRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS-LG-DLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSD 283 (537)
Q Consensus 207 L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-l~-~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 283 (537)
-++++++++.+..+|..+. ..+++|+|++|.+..+|.. +. ++++|++|++++|+++.++. .+.++++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3688999999999987664 4689999999999888765 44 89999999999999997764 588999999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEeccc
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 337 (537)
|.+.. ..+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+.
T Consensus 98 N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHT--LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCc--CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 98876 44555666666666666655554333444444444444444444433
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=5e-17 Score=168.82 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=87.2
Q ss_pred cccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCC
Q 009315 301 KLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKK 380 (537)
Q Consensus 301 ~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 380 (537)
.|+.|++.+|.... +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|+|++ |.+++.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~Ls~-N~l~~l------------- 501 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASD-NALENV------------- 501 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC----CCCGGGGGCTTCCEEECCS-SCCCCC-------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc----ccchhhhcCCCCCEEECCC-CCCCCC-------------
Confidence 46667776666553 454 777888888888888877 5677788888888888887 444321
Q ss_pred cceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCc-hhhhhcCCCccEEEeccccccCceeee--cCCCCccccEEE
Q 009315 381 LTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDP-MPVLGQLKELKILRLFAHSYIGEQMTC--QKGWFPQLLVLK 457 (537)
Q Consensus 381 L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~~L~~L~ 457 (537)
| . +..+ ++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+.+..+.. ....+|+|+.|+
T Consensus 502 ----------p-~---l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 ----------D-G---VANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ----------G-G---GTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ----------c-c---cCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 1 1 1222 78889999999988765 888999999999999999887754321 123478888875
Q ss_pred e
Q 009315 458 L 458 (537)
Q Consensus 458 l 458 (537)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 3
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=1.1e-14 Score=123.95 Aligned_cols=126 Identities=18% Similarity=0.078 Sum_probs=92.9
Q ss_pred CceeeEEEcCCCCCC--CCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCcccc-CCccccccccccEEe
Q 009315 204 YRLLRVLDLERVYKP--VLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIAT-LPKSIWKSSTLRHLY 280 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~ 280 (537)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..++++++|++|++++|.++. +|..++.+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 578999999988887 7888889999999999999999887 668899999999999999986 777777899999999
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCCCch---HHhhcCccCcEEeE
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPL---NWLRNSKDLRKLGL 331 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~---~~l~~l~~L~~L~l 331 (537)
+++|.+.+ ...+..++.+++|++|++.+|......+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99998766 1112445555555555555554433222 23445555555443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=2.3e-14 Score=141.08 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=62.3
Q ss_pred eeEEEcCCCCCCCCchh-hc-cccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccCCc-cccccccccEEecc
Q 009315 207 LRVLDLERVYKPVLPET-IG-KLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMS 282 (537)
Q Consensus 207 L~~L~L~~~~~~~lp~~-~~-~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~ 282 (537)
+++|+|++|.+..++.. +. .+++|++|++++|.|..+| ..+.++++|++|+|++|+++.+|. .+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45555555555544332 32 4555555555555555444 234555555555555555554433 34455555555555
Q ss_pred ccccccccCCCccCCccccccccceEEecCCCCchHHh---hcCccCcEEeEEEeccc
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWL---RNSKDLRKLGLTFHFES 337 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~ 337 (537)
+|.+.. ..+..+..+++|+.|++.+|.+....+..+ ..+++|+.|++++|.+.
T Consensus 121 ~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 121 NNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCE--ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcccE--ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 555544 334445555555555555554442222222 34555555555555544
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=5.6e-14 Score=123.18 Aligned_cols=133 Identities=17% Similarity=0.083 Sum_probs=107.0
Q ss_pred ccccCCceeeEEEcCCCCCCCCchhhcccc-ccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccc-cccccc
Q 009315 199 ISKRGYRLLRVLDLERVYKPVLPETIGKLR-LLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSI-WKSSTL 276 (537)
Q Consensus 199 ~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L 276 (537)
+.+.++.+|++|++++|.+..+|. +..+. +|++|++++|.+..+ ..++.+++|++|++++|.++.+|..+ +.+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344557889999999999888865 45554 999999999999888 56899999999999999999888665 889999
Q ss_pred cEEeccccccccccCCCc--cCCccccccccceEEecCCCCchH----HhhcCccCcEEeEEEeccc
Q 009315 277 RHLYMSDIRFQLSAQKPF--VNSSLTKLQTLWGLLIGKKSRPLN----WLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~ 337 (537)
++|++++|.+.. ++. .++.+++|+.|++.+|... ..|. .+..+++|+.|+++.|...
T Consensus 91 ~~L~L~~N~i~~---~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE---LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC---GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc---chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998865 444 6778888888888887765 3344 3778888888888887754
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=3.9e-14 Score=126.03 Aligned_cols=126 Identities=18% Similarity=0.151 Sum_probs=72.7
Q ss_pred eEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc--cCCCCCCcEEeecCCccccC-CccccccccccEEecccc
Q 009315 208 RVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS--LGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 208 ~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~ 284 (537)
++++++++.++.+|..+.. +|++|++++|.+..+|.. ++.+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666666666554432 566666666666555542 55666666666666666543 445566666666666666
Q ss_pred ccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEeccc
Q 009315 285 RFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 285 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 337 (537)
.+.+ ..+..++.+++|++|++.+|......|..+..+++|+.|++++|.+.
T Consensus 89 ~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKE--ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCE--ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCc--cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6555 34444555566666665555555444555556666666666666554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=122.77 Aligned_cols=124 Identities=22% Similarity=0.178 Sum_probs=55.1
Q ss_pred EEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCc-cccccccccEEeccccccc
Q 009315 209 VLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQ 287 (537)
Q Consensus 209 ~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~ 287 (537)
+++++++.+..+|..+. ++|++|++++|.+..+|..+.++++|++|++++|.++.++. .+.++++|++|++++|.+.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 34444444444443322 34444444444444444444444444444444444443332 2444444444444444444
Q ss_pred cccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecc
Q 009315 288 LSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFE 336 (537)
Q Consensus 288 ~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 336 (537)
. ..+..++.+++|+.|++.+|.+....+..+..+++|+.|++++|.+
T Consensus 92 ~--i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 C--IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp B--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred E--eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4 3333444444444444444444322223344555555555555543
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=1.2e-13 Score=148.08 Aligned_cols=149 Identities=17% Similarity=0.069 Sum_probs=105.9
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS 246 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~ 246 (537)
...++.|+.|.+.++....+|...+ ++++|++|+|++|.+..+|..|+++++|++|+|++|.|..+|..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-----------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-----------KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-----------GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-----------CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 4557788888888887777776533 26888899999888888888888889999999999888888888
Q ss_pred cCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCcccc-ccccceEEecCCCCchHHhhcCcc
Q 009315 247 LGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTK-LQTLWGLLIGKKSRPLNWLRNSKD 325 (537)
Q Consensus 247 l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~~ 325 (537)
+++|++|++|+|++|.++.+|..++++++|++|+|++|.+.+ .+|..+..+.. +..+++..|.....+|. .
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~ 360 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK--QFLKILTEKSVTGLIFYLRDNRPEIPLPH------E 360 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS--HHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC--CChHHHhhcchhhhHHhhccCcccCcCcc------c
Confidence 888899999999998888888888888999999999888876 45555544322 12345556655544443 3
Q ss_pred CcEEeEEEe
Q 009315 326 LRKLGLTFH 334 (537)
Q Consensus 326 L~~L~l~~~ 334 (537)
|+.|+++.|
T Consensus 361 l~~l~l~~n 369 (727)
T 4b8c_D 361 RRFIEINTD 369 (727)
T ss_dssp ---------
T ss_pred cceeEeecc
Confidence 444555544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=2.1e-13 Score=118.48 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=105.0
Q ss_pred cCceeEEEeccCCCC--CCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCc-cCcc
Q 009315 170 LERLHSYLSFDNRKG--DKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDS-IPKS 246 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~ 246 (537)
.++++.|.+.++... .+|.. +. .+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~----------~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TA----------EFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CG----------GGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCChhhHHHH-HH----------hCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH
Confidence 466777777766554 55543 22 378899999999988888 788899999999999999876 7776
Q ss_pred cCCCCCCcEEeecCCccccCC--ccccccccccEEeccccccccccCCC---ccCCccccccccceEEecCC
Q 009315 247 LGDLPSLETLDVKRTNIATLP--KSIWKSSTLRHLYMSDIRFQLSAQKP---FVNSSLTKLQTLWGLLIGKK 313 (537)
Q Consensus 247 l~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~~~~~~~~ 313 (537)
+.++++|++|++++|.++.+| ..+..+++|++|++++|.+.. ..+ ..+..+++|+.|++..|...
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN--LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT--STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc--hHHHHHHHHHhCccCcEecCCCCChh
Confidence 777999999999999999876 688899999999999998887 333 37888999999999888764
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=7.9e-14 Score=118.59 Aligned_cols=131 Identities=16% Similarity=0.058 Sum_probs=105.8
Q ss_pred cccccceeecCCCCCC--ccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccccccccccCCCccCCcccccc
Q 009315 226 KLRLLRHVGLRWTFLD--SIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQ 303 (537)
Q Consensus 226 ~l~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 303 (537)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.+ .+|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG--GLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS--CTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc--hHHHHhhhCCCCC
Confidence 3578999999999997 8999889999999999999999977 778999999999999999887 4677777788899
Q ss_pred ccceEEecCCCC-chHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEE
Q 009315 304 TLWGLLIGKKSR-PLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLR 359 (537)
Q Consensus 304 ~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 359 (537)
+|++.+|..... .+..++.+++|+.|++++|.+.+........+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 998888877642 34678888888999888888774311122467778888888764
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.8e-14 Score=128.92 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=117.0
Q ss_pred eeeEEEcCCC--CCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 206 LLRVLDLERV--YKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 206 ~L~~L~L~~~--~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
.|+...+++. .++.+|..++.+++|++|++++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 3455555543 56677779999999999999999998898 78899999999999999999998888889999999999
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCc-hHHhhcCccCcEEeEEEeccccc-------HHHHHHHhccCCCcce
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRP-LNWLRNSKDLRKLGLTFHFESLQ-------DQEITKWIKDLEHLES 355 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-------~~~~~~~l~~l~~L~~ 355 (537)
|.+.. ++ .++.+++|+.|++.+|...... ...+..+++|+.|++++|.+... .......+..+++|+.
T Consensus 103 N~l~~---l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 103 NQIAS---LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EECCC---HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CcCCc---CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 98877 44 5788899999999988876422 24788999999999999987641 0111234778889998
Q ss_pred EE
Q 009315 356 LM 357 (537)
Q Consensus 356 L~ 357 (537)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=8.9e-13 Score=117.16 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=101.2
Q ss_pred eEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchh--hccccccceeecCCCCCCcc-CcccCCC
Q 009315 174 HSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPET--IGKLRLLRHVGLRWTFLDSI-PKSLGDL 250 (537)
Q Consensus 174 r~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--~~~l~~L~~L~l~~~~i~~l-p~~l~~l 250 (537)
+++.+.++..+.+|... ...|++|++++|.+..++.. ++.+++|++|++++|.+..+ |..+.++
T Consensus 11 ~~l~~s~~~l~~ip~~~-------------~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-------------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCSCC-------------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcCccCC-------------CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 34555566666666531 23688999999988888753 88999999999999999776 6778899
Q ss_pred CCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccceEEecCCC
Q 009315 251 PSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKS 314 (537)
Q Consensus 251 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~ 314 (537)
++|++|++++|+++.++. .+..+++|++|++++|.+.+ ..|..++.+++|++|++.+|....
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe--eCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999999986654 47889999999999999888 667888999999999988877653
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=5.7e-13 Score=116.68 Aligned_cols=131 Identities=15% Similarity=0.074 Sum_probs=110.3
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCccc
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSL 247 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l 247 (537)
..+.+|+.|.+.++....+|. +... .++|++|++++|.+..+ ..++.+++|++|++++|.+..+|..+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~--~~~~---------~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN--LGAT---------LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC--GGGG---------TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred CCcCCceEEEeeCCCCchhHH--hhhc---------CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 446778888888877766643 2221 35899999999999887 68899999999999999999998765
Q ss_pred -CCCCCCcEEeecCCccccCCc--cccccccccEEeccccccccccCCCc----cCCccccccccceEEecCC
Q 009315 248 -GDLPSLETLDVKRTNIATLPK--SIWKSSTLRHLYMSDIRFQLSAQKPF----VNSSLTKLQTLWGLLIGKK 313 (537)
Q Consensus 248 -~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~----~~~~l~~L~~L~~~~~~~~ 313 (537)
+.+++|++|++++|.++.+|. .+..+++|++|++++|.+.. .|. .++.+++|+.|++..+...
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~---~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN---KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG---STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC---cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 889999999999999998887 88999999999999999876 455 4889999999999888653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=115.32 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=91.8
Q ss_pred ceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccCCc-cccccccccEEecc
Q 009315 205 RLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMS 282 (537)
Q Consensus 205 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~ 282 (537)
+.|++|++++|.+..+|..+..+++|++|++++|.+..++ ..+.++++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5689999999999999999999999999999999998876 458899999999999999997765 68899999999999
Q ss_pred ccccccccCCCccCCccccccccceEEecC
Q 009315 283 DIRFQLSAQKPFVNSSLTKLQTLWGLLIGK 312 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~ 312 (537)
+|.+.. ..+..+..+++|+.|++.+|..
T Consensus 111 ~N~l~~--~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISV--VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCB--CCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCe--eChhhhhcCccccEEEeCCCCe
Confidence 999887 5566788899999998877754
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=7.3e-13 Score=137.53 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=109.2
Q ss_pred cCCceeeEEE-cCCCCCCCCch------hhcc--ccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccc
Q 009315 202 RGYRLLRVLD-LERVYKPVLPE------TIGK--LRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWK 272 (537)
Q Consensus 202 ~~~~~L~~L~-L~~~~~~~lp~------~~~~--l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~ 272 (537)
+.+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.+..+|. ++.+++|++|++++|.++.+|..+++
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~ 484 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA 484 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGG
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhc
Confidence 3466777777 45443333221 1111 1258888888888888887 88888888888888888888888888
Q ss_pred cccccEEeccccccccccCCCccCCccccccccceEEecCCCCc-hHHhhcCccCcEEeEEEecccccHHHHHHHhccCC
Q 009315 273 SSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRP-LNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLE 351 (537)
Q Consensus 273 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 351 (537)
+++|++|++++|.+.+ +| .++.+++|+.|++.+|.+.... |..++.+++|+.|++++|.+.+........+..++
T Consensus 485 l~~L~~L~Ls~N~l~~---lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 485 LRCLEVLQASDNALEN---VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp CTTCCEEECCSSCCCC---CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred CCCCCEEECCCCCCCC---Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 8888888888888876 45 6888888888888888877655 78888888899998888887642112223344577
Q ss_pred CcceEEE
Q 009315 352 HLESLML 358 (537)
Q Consensus 352 ~L~~L~l 358 (537)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8887753
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=1.6e-13 Score=133.36 Aligned_cols=286 Identities=12% Similarity=0.000 Sum_probs=163.7
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCc-ccC
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPK-SLG 248 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~l~ 248 (537)
+.+++.|.+.+. +....+..+-. .+++|++|||++|.+......-+.++.++++.+..+ .||+ .|.
T Consensus 24 ~~~l~~L~l~g~----i~~~~~~~l~~------~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGK----LNAEDFRHLRD------EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEE----ECHHHHHHHHH------SCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTE
T ss_pred hCceeEEEEecc----ccHHHHHHHHH------hhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhc
Confidence 556666666542 33333443211 157788888888776622211222333455555544 3332 355
Q ss_pred C--------CCCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccceEEecC----CCC
Q 009315 249 D--------LPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGK----KSR 315 (537)
Q Consensus 249 ~--------l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~----~~~ 315 (537)
+ +++|+.|++.+ .++.++. .+..+++|+.+++.+|.+.. ..+..|..+.++..+....... ...
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~--i~~~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN--LLPEALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE--ECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred ccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc--cchhhhcCCCceEEecCcchhhhhccccc
Confidence 5 88888888888 7776665 46778888888888887665 5566676666555554322100 000
Q ss_pred chHHhhcCccCc-EEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCC-c
Q 009315 316 PLNWLRNSKDLR-KLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPR-A 393 (537)
Q Consensus 316 ~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-~ 393 (537)
....+..+..|+ .+.+.. .. .++..+.. ......++..+.+.|.+.. .
T Consensus 168 ~~~~f~~~~~L~~~i~~~~--~~----~l~~~~~~------------------------~~~~~~~~~~l~~~~~l~~~~ 217 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGA--MG----KLEDEIMK------------------------AGLQPRDINFLTIEGKLDNAD 217 (329)
T ss_dssp TTSCEEESCCCEEEEEECT--TC----CHHHHHHH------------------------TTCCGGGCSEEEEEECCCHHH
T ss_pred cccccccccccceeEEecC--CC----cHHHHHhh------------------------cccCccccceEEEeeeecHHH
Confidence 011123333333 121111 11 11211110 0011223333333332110 0
Q ss_pred CCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCcccc-EEEeccCCCCceeE-eCC
Q 009315 394 IDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLL-VLKLWVLKELKRWS-IEK 471 (537)
Q Consensus 394 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~ 471 (537)
+..+...+++|+.+++.+|.+.......|.++++|+.+++.+| + ..+....+.++++|+ .+.+.+ .++.+. ..+
T Consensus 218 ~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF 293 (329)
T 3sb4_A 218 FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF 293 (329)
T ss_dssp HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT--TCCEECTTTT
T ss_pred HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc--cceEEchhhh
Confidence 0000111378999999998888666778999999999999887 4 334444588899999 999977 566554 456
Q ss_pred CcccccccccccccccCC-CccccCCCCCCCEEEE
Q 009315 472 ETMPKLRELEIRRCQKLK-NPFESTNLTGLKELTL 505 (537)
Q Consensus 472 ~~~~~L~~L~l~~c~~l~-lp~~~~~l~~L~~L~l 505 (537)
..+++|+.|++.++.... -+..+.++++|+.|+.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 778899999998877666 4456888999998863
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=3.4e-12 Score=111.86 Aligned_cols=127 Identities=22% Similarity=0.190 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcc-cCCCCCCcEEeecCCccccCCcc-ccccccccEEeccccc
Q 009315 208 RVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKS-LGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYMSDIR 285 (537)
Q Consensus 208 ~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 285 (537)
+.++++++.+..+|..+. ++|++|++++|.+..+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555555554332 4555555555555544432 35555555555555555544433 3455555555555555
Q ss_pred cccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccc
Q 009315 286 FQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESL 338 (537)
Q Consensus 286 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 338 (537)
+.. ..+..++.+++|++|++.+|......+..+..+++|+.|++++|.+..
T Consensus 88 l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQS--LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccc--cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 554 333344555555555555555443323334556666666666666554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=1.7e-11 Score=107.28 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=85.5
Q ss_pred CceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccCcc-cCCCCCCcEEeecCCccccCCcc-ccccccccEEe
Q 009315 204 YRLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIPKS-LGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLY 280 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~ 280 (537)
.+.|++|++++|.+..+|. .++.+++|++|++++|.+..+|.. ++.+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3568888888888877764 467888888888888888877654 57888888888888888877664 57888888888
Q ss_pred ccccccccccCCCccCCccccccccceEEecCCC
Q 009315 281 MSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKS 314 (537)
Q Consensus 281 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~ 314 (537)
+++|.+.. .++..+..+++|++|++.+|....
T Consensus 107 l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 107 LDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCcceE--eCHHHhcCCcccCEEEecCCCeec
Confidence 88888876 455556788888888888776654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=7.3e-14 Score=125.01 Aligned_cols=128 Identities=21% Similarity=0.139 Sum_probs=107.7
Q ss_pred CceeeEEEcCCCCCCCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 204 YRLLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+++|++|++++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCC
Confidence 789999999999888888 899999999999999999999988888899999999999999887 688999999999999
Q ss_pred cccccccCCC-ccCCccccccccceEEecCCCCchH----------HhhcCccCcEEeEEEeccc
Q 009315 284 IRFQLSAQKP-FVNSSLTKLQTLWGLLIGKKSRPLN----------WLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 284 ~~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~----------~l~~l~~L~~L~l~~~~~~ 337 (537)
|.+.. ..+ ..+..+++|++|++.+|......|. .+..+++|+.|+ ++.+.
T Consensus 125 N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 125 NKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECCC--HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CcCCc--hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 98876 111 4688899999999988876543332 378899999987 55554
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=2.4e-11 Score=105.89 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=53.7
Q ss_pred eEEEcCCCCCCCCchhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCccccCCcc-ccccccccEEeccccc
Q 009315 208 RVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYMSDIR 285 (537)
Q Consensus 208 ~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 285 (537)
+.++++++.++.+|..+. ++|++|++++|.+..+ |..++++++|++|+|++|+++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455555555555555443 5566666666655544 34455566666666666666555544 3455666666666655
Q ss_pred cccccCCCccCCccccccccceEEec
Q 009315 286 FQLSAQKPFVNSSLTKLQTLWGLLIG 311 (537)
Q Consensus 286 ~~~~~~~~~~~~~l~~L~~L~~~~~~ 311 (537)
+.. .++..++.+++|+.|++.+|.
T Consensus 93 l~~--l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKS--IPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCC--CCTTTTTTCTTCSEEECCSSC
T ss_pred cce--eCHHHhccccCCCEEEeCCCC
Confidence 554 233334445555555444443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=2.4e-11 Score=105.43 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=72.9
Q ss_pred eeeEEEcCCCCCCCCchhhccccccceeecCCCCCCcc-CcccCCCCCCcEEeecCCccccCCcc-ccccccccEEeccc
Q 009315 206 LLRVLDLERVYKPVLPETIGKLRLLRHVGLRWTFLDSI-PKSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYMSD 283 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 283 (537)
..++++++++.+..+|..+. ++|++|++++|.|..+ |..+.++++|++|++++|+++.+|.. +.++++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35677888887777776653 7788888888888766 45577788888888888888777665 46778888888888
Q ss_pred cccccccCCCccCCccccccccceEEecC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGK 312 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~ 312 (537)
|.+.. ..+..++.+++|+.|++.+|..
T Consensus 88 N~l~~--~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKS--IPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCE--eCHHHhcCCCCCCEEEeCCCCC
Confidence 87766 4444566666666666555543
No 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.21 E-value=6.2e-12 Score=133.89 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=80.2
Q ss_pred ChhhHHHHHhhcChhhhhhHHHHhcCCCcHhH-HHHhhhhccCCCCcccchhhHHHHHHHhcccccccCCCCChHHHHHH
Q 009315 8 ALDDQSTTLDQLSFRDISSIWVFANKSLSPHL-KACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEENYMAPEDQVKT 86 (537)
Q Consensus 8 ~~~~W~~~l~~~~~~~i~~~L~lSY~~L~~~l-k~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~~~g~~ 86 (537)
+.++|+.. ....|..+|++||+.||+++ |+||+|||+||+++.|+++.++.+|+++| ++.++.
T Consensus 343 s~eeW~~~----~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------------eedAe~ 406 (1221)
T 1vt4_I 343 TWDNWKHV----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------------KSDVMV 406 (1221)
T ss_dssp SHHHHHHC----SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------------SHHHHH
T ss_pred CHHHHhcC----ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------------HHHHHH
Confidence 56788764 34679999999999999999 99999999999999999999999999887 124788
Q ss_pred HHHHHhhccceEeeecCCCCCeeEEEcChhHHHHHh
Q 009315 87 IFDQLELMNMIEVVKRKPDGKPKTCRVPSSLSDNLF 122 (537)
Q Consensus 87 ~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~ 122 (537)
++++|+++|||+.. +....|+|||++++++.
T Consensus 407 ~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 99999999999873 12247899999999653
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=1.3e-10 Score=112.72 Aligned_cols=261 Identities=12% Similarity=0.010 Sum_probs=139.1
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCchhhcc--------ccccceeecCCCCCC
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPETIGK--------LRLLRHVGLRWTFLD 241 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~--------l~~L~~L~l~~~~i~ 241 (537)
+++|++|.+.++....+... ...++.++.+.+..+.+. +..|.+ +++|+.+.+.+ .+.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~-----------~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~ 113 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK-----------AGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIK 113 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES-----------SSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCC
T ss_pred hccCeEEecCcceeEEecCc-----------cccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-ccc
Confidence 78899998877654411100 011233444555544222 245667 99999999999 888
Q ss_pred ccCc-ccCCCCCCcEEeecCCccccCCc-cccccccccEEecccccccc--ccCCCccCCcccccc-ccceEEecCCCCc
Q 009315 242 SIPK-SLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQL--SAQKPFVNSSLTKLQ-TLWGLLIGKKSRP 316 (537)
Q Consensus 242 ~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~-~L~~~~~~~~~~~ 316 (537)
.|++ .|.+|++|+.+++++|.+..++. .+..+.++..+....+.... .......+..+.+|+ .+.+ .....+
T Consensus 114 ~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~---~~~~~l 190 (329)
T 3sb4_A 114 NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQV---GAMGKL 190 (329)
T ss_dssp EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEE---CTTCCH
T ss_pred chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEe---cCCCcH
Confidence 8875 48899999999999998876654 46677777777766532211 001223344555555 2221 111223
Q ss_pred hHHhh----cCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCC
Q 009315 317 LNWLR----NSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPR 392 (537)
Q Consensus 317 ~~~l~----~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~ 392 (537)
+..+. ...++..+.+.++-... ........+++|+.++|.. +.++.... ..+..+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~l~~~---~~~~l~~~~~~L~~l~L~~-n~i~~I~~---~aF~~~-------------- 249 (329)
T 3sb4_A 191 EDEIMKAGLQPRDINFLTIEGKLDNA---DFKLIRDYMPNLVSLDISK-TNATTIPD---FTFAQK-------------- 249 (329)
T ss_dssp HHHHHHTTCCGGGCSEEEEEECCCHH---HHHHHHHHCTTCCEEECTT-BCCCEECT---TTTTTC--------------
T ss_pred HHHHhhcccCccccceEEEeeeecHH---HHHHHHHhcCCCeEEECCC-CCcceecH---hhhhCC--------------
Confidence 33222 35677788777654332 3333233488999999987 33332222 223333
Q ss_pred cCCccccCCCCeeEEEEecccCCCCchhhhhcCCCcc-EEEeccccccCceeeecCCCCccccEEEeccCCCCceeEe-C
Q 009315 393 AIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELK-ILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSI-E 470 (537)
Q Consensus 393 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~ 470 (537)
++|+.+++.+| +.......|.++++|+ .+++.+ .+.. +....+.++++|+.|++.++ .++.++. .
T Consensus 250 ---------~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a 316 (329)
T 3sb4_A 250 ---------KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGD-KITTLGDEL 316 (329)
T ss_dssp ---------TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSS-CCCEECTTT
T ss_pred ---------CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCC-ccCccchhh
Confidence 44555555444 3333344555555555 555554 2222 22223555555666655443 3333322 3
Q ss_pred CCccccccccc
Q 009315 471 KETMPKLRELE 481 (537)
Q Consensus 471 ~~~~~~L~~L~ 481 (537)
+..+++|+.++
T Consensus 317 F~~~~~L~~ly 327 (329)
T 3sb4_A 317 FGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCCCEEE
T ss_pred hcCCcchhhhc
Confidence 34445555443
No 141
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.19 E-value=1.9e-11 Score=140.15 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=87.5
Q ss_pred hhHHHHHhhcCh--------------hhhhhHHHHhcCCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhcccccccC
Q 009315 10 DDQSTTLDQLSF--------------RDISSIWVFANKSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEE 75 (537)
Q Consensus 10 ~~W~~~l~~~~~--------------~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~ 75 (537)
.+|+..++.+.. +.+..+|++||+.||+++|+||+|||+||+++.|+++.++.+|.++
T Consensus 336 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------- 407 (1249)
T 3sfz_A 336 NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------- 407 (1249)
T ss_dssp SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC--------
T ss_pred hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC--------
Confidence 468888876522 2489999999999999999999999999999999999999999543
Q ss_pred CCCChHHHHHHHHHHHhhccceEeeecCCCCCeeEEEcChhHHHHHhhhhhcC
Q 009315 76 NYMAPEDQVKTIFDQLELMNMIEVVKRKPDGKPKTCRVPSSLSDNLFPKAESG 128 (537)
Q Consensus 76 ~~~~~~~~g~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~~ 128 (537)
++.+++++++|++++|++... .+....|+|||++|+++++.+.++
T Consensus 408 -----~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -----TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -----HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -----HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 466889999999999998764 345567999999999999887654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.1e-10 Score=101.67 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=87.0
Q ss_pred eEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcc-cCCCC
Q 009315 174 HSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKS-LGDLP 251 (537)
Q Consensus 174 r~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~ 251 (537)
+.+...++..+.+|... .+.|++|+|++|.+..+ |..++.+++|++|+|++|.+..+|.. +.+++
T Consensus 15 ~~l~~~~n~l~~iP~~~-------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCCSSCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCCCCccCCCc-------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 34566666677777541 36799999999999888 66899999999999999999999876 58999
Q ss_pred CCcEEeecCCccccCCcc-ccccccccEEecccccccc
Q 009315 252 SLETLDVKRTNIATLPKS-IWKSSTLRHLYMSDIRFQL 288 (537)
Q Consensus 252 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~ 288 (537)
+|++|++++|+++.+|.. +..+++|++|++++|.+..
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999999999999988876 8899999999999998765
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=8.8e-11 Score=101.87 Aligned_cols=119 Identities=20% Similarity=0.136 Sum_probs=98.3
Q ss_pred ccceeecCCCCCCccCcccCCCCCCcEEeecCCccccC-CccccccccccEEeccccccccccCCCccCCccccccccce
Q 009315 229 LLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWG 307 (537)
Q Consensus 229 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 307 (537)
..+.++++++.+..+|..+. .+|++|++++|.++.+ |..+.++++|++|++++|.+.. ..+..++.+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEEC
Confidence 46789999999999998774 8999999999999977 5678999999999999999987 66667899999999999
Q ss_pred EEecCCCCchHHhhcCccCcEEeEEEeccccc---HHHHHHHhccCC
Q 009315 308 LLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQ---DQEITKWIKDLE 351 (537)
Q Consensus 308 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~l~ 351 (537)
.+|.+....+..+..+++|+.|++++|.+... ...+..++...+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~ 132 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHP 132 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCc
Confidence 99988765566688999999999999986532 224555555444
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.03 E-value=2.4e-09 Score=106.11 Aligned_cols=216 Identities=11% Similarity=0.012 Sum_probs=129.0
Q ss_pred eeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccC-cccCCCCCCcEEeecCCccccCCccccccccccEEeccc
Q 009315 206 LLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIP-KSLGDLPSLETLDVKRTNIATLPKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 206 ~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 283 (537)
+|+.+.+.++ +..++ .+|.++ +|+.+.+.. .+..|+ ..|.+|.+|+.+++.+|+++.+|.......+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 5888888765 55553 456664 688888876 566675 457889999999999998888887766678899998875
Q ss_pred cccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCC
Q 009315 284 IRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVND 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 363 (537)
+ +.. .....|..+++|+.+.+..+ ...--...+.+ .+|+.+.+. +.+.. --...+.+|++|+.+.+.+ +.
T Consensus 213 ~-l~~--I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~---I~~~aF~~c~~L~~l~l~~-~~ 282 (401)
T 4fdw_A 213 T-LKE--IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN---IASRAFYYCPELAEVTTYG-ST 282 (401)
T ss_dssp T-CCE--ECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE---ECTTTTTTCTTCCEEEEES-SC
T ss_pred c-hhe--ehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE---EChhHhhCCCCCCEEEeCC-cc
Confidence 4 443 45667888888888876532 11111233444 567777763 22221 1123466677777777765 22
Q ss_pred CCCCC--ccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCc
Q 009315 364 FLEPS--DLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGE 441 (537)
Q Consensus 364 ~~~~~--~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 441 (537)
..... ...-..+.. +++|+.+.+.. .+.......|.+|++|+.+.|..+ +..
T Consensus 283 ~~~~~~~~I~~~aF~~-----------------------c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~- 336 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEG-----------------------CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ- 336 (401)
T ss_dssp CCCCTTCEECTTTTTT-----------------------CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE-
T ss_pred ccCCcccEECHHHhhC-----------------------CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE-
Confidence 21000 000111222 35666666653 344334556677777777777544 222
Q ss_pred eeeecCCCCccccEEEeccC
Q 009315 442 QMTCQKGWFPQLLVLKLWVL 461 (537)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~ 461 (537)
+....+.++ +|+.+.+.++
T Consensus 337 I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCS
T ss_pred EcHHhCCCC-CCCEEEEcCC
Confidence 222235666 7777777665
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=9.6e-09 Score=101.81 Aligned_cols=170 Identities=9% Similarity=-0.002 Sum_probs=120.1
Q ss_pred ceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCcccCCC
Q 009315 172 RLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPKSLGDL 250 (537)
Q Consensus 172 ~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~l~~l 250 (537)
+|+++.+.++ ...++...|.+ ..|+.+.+.+ .+..+ +.+|.++++|+.+++.+|.+..+|.....+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-----------~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-----------STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-----------CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred CccEEEeCCC-ccEECHHhcCC-----------CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 5666665443 44455444443 3589999986 45555 468999999999999999999998876668
Q ss_pred CCCcEEeecCCccccCCc-cccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEE
Q 009315 251 PSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKL 329 (537)
Q Consensus 251 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L 329 (537)
.+|+.+.+..+ ++.++. .+.++++|+.+++..+ +.. ....+|.. .+|+.+.+. +.....-...+.++++|+.+
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~--I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST--IGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE--ECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC--cccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence 99999999854 676654 5778999999999875 333 34566766 789988873 33332235678899999999
Q ss_pred eEEEeccccc-HH-HHHHHhccCCCcceEEEEe
Q 009315 330 GLTFHFESLQ-DQ-EITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 330 ~l~~~~~~~~-~~-~~~~~l~~l~~L~~L~l~~ 360 (537)
.+..+..... .. --...+..|++|+.+.+..
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 9987764300 00 1134578889999998863
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=3e-09 Score=103.86 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=57.0
Q ss_pred EEcCCC-CCCCCchhhccccccceeecCC-CCCCccC-cccCCCCCCcEEeecCCccccCCc-cccccccccEEeccccc
Q 009315 210 LDLERV-YKPVLPETIGKLRLLRHVGLRW-TFLDSIP-KSLGDLPSLETLDVKRTNIATLPK-SIWKSSTLRHLYMSDIR 285 (537)
Q Consensus 210 L~L~~~-~~~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 285 (537)
++++++ .+..+|. +..+++|++|+|++ |.+..+| ..|++|++|++|+|++|+++.+|. .+.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 355555 5666666 66666666666664 6666555 346666666666666666664433 45666666666666666
Q ss_pred cccccCCCccCCccccccccceEEecC
Q 009315 286 FQLSAQKPFVNSSLTKLQTLWGLLIGK 312 (537)
Q Consensus 286 ~~~~~~~~~~~~~l~~L~~L~~~~~~~ 312 (537)
+.. .++..+..++ |+.|++.+|..
T Consensus 92 l~~--~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LES--LSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSC--CCSTTTCSCC-CCEEECCSSCC
T ss_pred cce--eCHHHcccCC-ceEEEeeCCCc
Confidence 655 3333343333 55555554443
No 147
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.88 E-value=2.6e-09 Score=112.28 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=83.1
Q ss_pred hhHHHHHhhcCh--------------hhhhhHHHHhcCCCcHhHHHHhhhhccCCCCcccchhhHHHHHHHhcccccccC
Q 009315 10 DDQSTTLDQLSF--------------RDISSIWVFANKSLSPHLKACLHYFRLFPKSYEVSVRRLLQLWLAERLETPIEE 75 (537)
Q Consensus 10 ~~W~~~l~~~~~--------------~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~Wia~g~i~~~~~ 75 (537)
.+|+.+++.+.. ..|..+++.||+.||++.|+||++||+||+|+.|+.+.++.+|.++
T Consensus 336 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------- 407 (591)
T 1z6t_A 336 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------- 407 (591)
T ss_dssp TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------
T ss_pred hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC--------
Confidence 469888876531 3588999999999999999999999999999999999999999532
Q ss_pred CCCChHHHHHHHHHHHhhccceEeeecCCCCCeeEEEcChhHHHHHhhhh
Q 009315 76 NYMAPEDQVKTIFDQLELMNMIEVVKRKPDGKPKTCRVPSSLSDNLFPKA 125 (537)
Q Consensus 76 ~~~~~~~~g~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 125 (537)
.+.+..++++|+++||++... ++....|+||+++|++++...
T Consensus 408 -----~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 -----TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -----HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 234688999999999998654 234457999999999998773
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.86 E-value=4e-08 Score=97.59 Aligned_cols=321 Identities=10% Similarity=0.006 Sum_probs=174.4
Q ss_pred CCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccC-c
Q 009315 168 KHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIP-K 245 (537)
Q Consensus 168 ~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~ 245 (537)
..+.+|+++.+.++ ...+....|.+ |++|+.+++.++ +..+ ..+|..+..|+.+.+..+ +..++ .
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~~----------c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFEN----------CSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTTT----------CTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred hCCCCceEEEeCCC-ccCcchhHhhC----------CCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34555666555332 23344333333 566777766543 3333 234556666666555433 22222 1
Q ss_pred ccCCCCCCcEEeecCCccccC-CccccccccccEEeccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCc
Q 009315 246 SLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSK 324 (537)
Q Consensus 246 ~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 324 (537)
.+.++..++...... +..+ ...+.++++|+.+.+..+.. . .....+..+.+|+.+.+..+- .......+.++.
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~--I~~~~F~~c~~L~~i~l~~~~-~~I~~~~F~~~~ 208 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-T--LHNGLFSGCGKLKSIKLPRNL-KIIRDYCFAECI 208 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-E--ECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCT
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc-e--eccccccCCCCceEEEcCCCc-eEeCchhhcccc
Confidence 233333222222211 1111 22456677777777765432 1 344567777777777654321 111123455666
Q ss_pred cCcEEeEEEecccccHHHHHHHhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCe
Q 009315 325 DLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKL 404 (537)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 404 (537)
.|+.+.+..+.... .........|+.+.+.. ..... .-..+..+..++.+.+...........+..+..+
T Consensus 209 ~L~~i~~~~~~~~i-----~~~~~~~~~l~~i~ip~--~~~~i---~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 209 LLENMEFPNSLYYL-----GDFALSKTGVKNIIIPD--SFTEL---GKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGL 278 (394)
T ss_dssp TCCBCCCCTTCCEE-----CTTTTTTCCCCEEEECT--TCCEE---CSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTC
T ss_pred ccceeecCCCceEe-----ehhhcccCCCceEEECC--Cceec---ccccccccccceeEEcCCCcceeecccccccccc
Confidence 66666554332211 11123445677777643 11111 1123445667777776543221111112224677
Q ss_pred eEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeE-eCCCccccccccccc
Q 009315 405 TVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRELEIR 483 (537)
Q Consensus 405 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~ 483 (537)
+.+......+. ...+..+.+|+.+.+.++ + ..+....+.++.+|+.+.+.+ .++.+. ..+..+++|+.+.+.
T Consensus 279 ~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp CEEEECSSEEC---TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred ceeccCceeec---cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 77777655432 346778899999998654 2 223333478889999999964 355553 345678899999997
Q ss_pred ccccCC--CccccCCCCCCCEEEEecCchHHHHHHHhhccCccceEEcC
Q 009315 484 RCQKLK--NPFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVIIP 530 (537)
Q Consensus 484 ~c~~l~--lp~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~lp 530 (537)
.+ +. -...+..|++|+.+++.. +. ..+...+.+|.+|+.|.
T Consensus 352 ~~--l~~I~~~aF~~C~~L~~i~lp~--~~--~~~~~~F~~c~~L~~IK 394 (394)
T 4fs7_A 352 LS--LRKIGANAFQGCINLKKVELPK--RL--EQYRYDFEDTTKFKWIK 394 (394)
T ss_dssp TT--CCEECTTTBTTCTTCCEEEEEG--GG--GGGGGGBCTTCEEEEEC
T ss_pred cc--ccEehHHHhhCCCCCCEEEECC--CC--EEhhheecCCCCCcEEC
Confidence 65 44 455688999999999976 21 23456788999998764
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=4.2e-10 Score=110.46 Aligned_cols=163 Identities=18% Similarity=0.114 Sum_probs=85.8
Q ss_pred cCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCC--chhhccccccceeecCCCCCCccC---
Q 009315 170 LERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVL--PETIGKLRLLRHVGLRWTFLDSIP--- 244 (537)
Q Consensus 170 ~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--p~~~~~l~~L~~L~l~~~~i~~lp--- 244 (537)
.+.++.+.+.++..+......+...+. ...+.|++|+|++|.++.. ......+++|++|+|++|.++...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~-----~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLG-----SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHS-----SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHh-----hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 345666666655544333333333221 1235788888887766532 122234567888888888775321
Q ss_pred --ccc-CCCCCCcEEeecCCcccc-----CCccccccccccEEecccccccccc--CCCccCCccccccccceEEecCCC
Q 009315 245 --KSL-GDLPSLETLDVKRTNIAT-----LPKSIWKSSTLRHLYMSDIRFQLSA--QKPFVNSSLTKLQTLWGLLIGKKS 314 (537)
Q Consensus 245 --~~l-~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~~~~~~~~~ 314 (537)
..+ ...++|++|+|++|.++. ++..+..+++|++|++++|.+.... .+...+...++|++|++.+|.+..
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 112 345778888888887652 4445566777888888887765400 112223334444444444444332
Q ss_pred ----CchHHhhcCccCcEEeEEEeccc
Q 009315 315 ----RPLNWLRNSKDLRKLGLTFHFES 337 (537)
Q Consensus 315 ----~~~~~l~~l~~L~~L~l~~~~~~ 337 (537)
.+...+...++|+.|++++|.+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11222333444444444444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=7.2e-09 Score=101.14 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=89.3
Q ss_pred ceeecCCC-CCCccCcccCCCCCCcEEeecC-CccccCC-ccccccccccEEeccccccccccCCCccCCccccccccce
Q 009315 231 RHVGLRWT-FLDSIPKSLGDLPSLETLDVKR-TNIATLP-KSIWKSSTLRHLYMSDIRFQLSAQKPFVNSSLTKLQTLWG 307 (537)
Q Consensus 231 ~~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~-~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 307 (537)
..++.+++ .+..+|. +..+.+|++|+|++ |.++.+| ..+..+++|++|+|++|.+.+ ..+..|+.+++|+.|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeC
Confidence 35688887 8999999 99999999999996 9999877 568999999999999999998 67788999999999999
Q ss_pred EEecCCCCchHHhhcCccCcEEeEEEecccc
Q 009315 308 LLIGKKSRPLNWLRNSKDLRKLGLTFHFESL 338 (537)
Q Consensus 308 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 338 (537)
.+|.+....+..+..++ |+.|++.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99988754444555555 9999999998763
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=5.2e-10 Score=109.81 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=109.6
Q ss_pred CceeeEEEcCCCCCCCCc-hhhcc-----ccccceeecCCCCCCc--cCcccCCCCCCcEEeecCCccccCC-ccc----
Q 009315 204 YRLLRVLDLERVYKPVLP-ETIGK-----LRLLRHVGLRWTFLDS--IPKSLGDLPSLETLDVKRTNIATLP-KSI---- 270 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp-~~~~~-----l~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L~L~~~~l~~lp-~~i---- 270 (537)
++.|+.|++++|.+.... ..+.. .++|+.|+|++|.++. +..-...+.+|++|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999876542 23332 3789999999998853 2222234678999999999886322 222
Q ss_pred -cccccccEEeccccccccc--cCCCccCCccccccccceEEecCCC----CchHHhhcCccCcEEeEEEeccccc-HHH
Q 009315 271 -WKSSTLRHLYMSDIRFQLS--AQKPFVNSSLTKLQTLWGLLIGKKS----RPLNWLRNSKDLRKLGLTFHFESLQ-DQE 342 (537)
Q Consensus 271 -~~l~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~-~~~ 342 (537)
...++|++|++++|.+... ..++..+..+++|++|++..|.+.. .++..+...++|+.|++++|.++.. ...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2467899999999987641 1133344667888888888877643 2345567778888888888887642 124
Q ss_pred HHHHhccCCCcceEEEEeeCCC
Q 009315 343 ITKWIKDLEHLESLMLRSVNDF 364 (537)
Q Consensus 343 ~~~~l~~l~~L~~L~l~~~~~~ 364 (537)
++..+...++|+.|+|++ |.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~-N~i 251 (372)
T 3un9_A 231 LARAAREHPSLELLHLYF-NEL 251 (372)
T ss_dssp HHHHHHHCSSCCEEECTT-SSC
T ss_pred HHHHHHhCCCCCEEeccC-CCC
Confidence 555666778888888887 434
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=1.9e-08 Score=97.89 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=72.4
Q ss_pred CCeeEEEEecccCCCCchhhhh--cCCCccEEEecc--ccccCce------eeecCCCCccccEEEeccCCCCceeE---
Q 009315 402 EKLTVFTLSLSHLSKDPMPVLG--QLKELKILRLFA--HSYIGEQ------MTCQKGWFPQLLVLKLWVLKELKRWS--- 468 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~~--~~~~~~~------~~~~~~~~~~L~~L~l~~~~~l~~~~--- 468 (537)
++|+.|++..|.+.......++ .+|+|+.|+|+. +...+.. +......||+|+.|.+.+|.......
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 7899999988887655555554 789999999863 2211110 11112468999999998875432211
Q ss_pred eCCCcccccccccccccccCC-----CccccCCCCCCCEEEEecCc
Q 009315 469 IEKETMPKLRELEIRRCQKLK-----NPFESTNLTGLKELTLTDME 509 (537)
Q Consensus 469 ~~~~~~~~L~~L~l~~c~~l~-----lp~~~~~l~~L~~L~l~~c~ 509 (537)
.....+|+|++|+|+.|.... ++.++.++++|+.|++++|.
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 122468999999998886544 45555678999999999865
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=1.6e-07 Score=93.18 Aligned_cols=297 Identities=8% Similarity=-0.008 Sum_probs=174.2
Q ss_pred CCceeeEEEcCCCCCCCC-chhhccccccceeecCCCCCCccCc-ccCCCCCCcEEeecCCccccCC-ccccccccccEE
Q 009315 203 GYRLLRVLDLERVYKPVL-PETIGKLRLLRHVGLRWTFLDSIPK-SLGDLPSLETLDVKRTNIATLP-KSIWKSSTLRHL 279 (537)
Q Consensus 203 ~~~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L 279 (537)
++.+|+.+.+..+ ++.+ ..+|.++++|+.+++..+ +..++. .+.++.+|+.+.+..+ +..++ ..+.++..+...
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 3788999999744 5555 357888999999999754 566653 4677888888777654 33332 233444333333
Q ss_pred eccccccccccCCCccCCccccccccceEEecCCCCchHHhhcCccCcEEeEEEecccccHHHHHHHhccCCCcceEEEE
Q 009315 280 YMSDIRFQLSAQKPFVNSSLTKLQTLWGLLIGKKSRPLNWLRNSKDLRKLGLTFHFESLQDQEITKWIKDLEHLESLMLR 359 (537)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 359 (537)
....... ....++..+++|+.+.+..... ......+..+.+|+.+.+..+- .. --...+.++..|+.+.+.
T Consensus 146 ~~~~~~~----i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~~-~~---I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 146 IPEGVTV----IGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRNL-KI---IRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCTTCCE----ECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTTC-CE---ECTTTTTTCTTCCBCCCC
T ss_pred cCccccc----cchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCCc-eE---eCchhhccccccceeecC
Confidence 2222211 2245678888888887643221 1123456777888877765431 11 012235667777777664
Q ss_pred eeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcCCCccEEEecccccc
Q 009315 360 SVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYI 439 (537)
Q Consensus 360 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 439 (537)
. +.. ... ........|+.+.+.......-......+..++.+.+..+... .....+..++.++.+......+
T Consensus 217 ~-~~~-~i~----~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 217 N-SLY-YLG----DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV- 288 (394)
T ss_dssp T-TCC-EEC----TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-
T ss_pred C-Cce-Eee----hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee-
Confidence 3 111 000 1111235667666643221111111222477888888766432 3455778888888888766543
Q ss_pred CceeeecCCCCccccEEEeccCCCCceeE-eCCCcccccccccccccccCC-C-ccccCCCCCCCEEEEecCchHHHHHH
Q 009315 440 GEQMTCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRELEIRRCQKLK-N-PFESTNLTGLKELTLTDMEKSFEDEV 516 (537)
Q Consensus 440 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~-l-p~~~~~l~~L~~L~l~~c~n~~~~~~ 516 (537)
+...+..+.+|+.+.+.+ .++.+. ..+..+++|+.++|... ++ + ...+.+|++|+.+.+.. + +..--
T Consensus 289 ---~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~--~-l~~I~ 358 (394)
T 4fs7_A 289 ---PEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL--S-LRKIG 358 (394)
T ss_dssp ---CTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT--T-CCEEC
T ss_pred ---cccccccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc--c-ccEeh
Confidence 222367889999999865 355553 23566789999999643 44 4 55688899999999865 2 22111
Q ss_pred HhhccCccceEEc
Q 009315 517 KQSLAGTVNVVII 529 (537)
Q Consensus 517 ~~~~~~~~~l~~l 529 (537)
..++.+|.+|+.+
T Consensus 359 ~~aF~~C~~L~~i 371 (394)
T 4fs7_A 359 ANAFQGCINLKKV 371 (394)
T ss_dssp TTTBTTCTTCCEE
T ss_pred HHHhhCCCCCCEE
Confidence 3467777777653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1e-07 Score=92.72 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=80.5
Q ss_pred CceeeEEEcCCCCC----------CCCchhhccccccceeecCCCCCCccCcccCCCCCCcEEeecCCccc-cCCcccc-
Q 009315 204 YRLLRVLDLERVYK----------PVLPETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKRTNIA-TLPKSIW- 271 (537)
Q Consensus 204 ~~~L~~L~L~~~~~----------~~lp~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~i~- 271 (537)
+++|+.|.+..... ..+...+..+++|+.|+++++.-..+|. +. +++|+.|++..|.+. .....+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 56777777754321 2345556677888888888773224444 33 788888888887765 2222333
Q ss_pred -ccccccEEecccc--cccccc---CCCccC--CccccccccceEEecCCCCchHHhh---cCccCcEEeEEEeccccc-
Q 009315 272 -KSSTLRHLYMSDI--RFQLSA---QKPFVN--SSLTKLQTLWGLLIGKKSRPLNWLR---NSKDLRKLGLTFHFESLQ- 339 (537)
Q Consensus 272 -~l~~L~~L~l~~~--~~~~~~---~~~~~~--~~l~~L~~L~~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~- 339 (537)
.+++|++|+|+.+ ...+.. .+...+ ..+++|++|++..|......+..+. .+++|+.|+++.|.+...
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 6788888887532 111100 001111 2355666666555444322222221 355566666655554431
Q ss_pred HHHHHHHhccCCCcceEEEEe
Q 009315 340 DQEITKWIKDLEHLESLMLRS 360 (537)
Q Consensus 340 ~~~~~~~l~~l~~L~~L~l~~ 360 (537)
...++..+..+++|+.|+++.
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHhhcccCCcceEEECCC
Confidence 112232334455666666654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=2.1e-07 Score=79.53 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=51.1
Q ss_pred CCeeEEEEecccCCCCchhhhhcCCCccEEEecccc-ccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccc
Q 009315 402 EKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHS-YIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLREL 480 (537)
Q Consensus 402 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 480 (537)
..|+.|++++|.++......+..+++|+.|+|++|. +++..... +..++ ...++|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~--------------------~~~~~L~~L 119 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLE--------------------NLQKSMLEM 119 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCH--------------------HHHHHCCEE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcc--------------------cccCCCCEE
Confidence 357777777777665555555666666666666664 32221111 11110 013567777
Q ss_pred cccccccCC--CccccCCCCCCCEEEEecCch
Q 009315 481 EIRRCQKLK--NPFESTNLTGLKELTLTDMEK 510 (537)
Q Consensus 481 ~l~~c~~l~--lp~~~~~l~~L~~L~l~~c~n 510 (537)
+|++|+.++ --..+.++++|+.|++++|+.
T Consensus 120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp EEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred EcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 777777666 223456678888888888873
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.23 E-value=1.6e-05 Score=78.70 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=75.4
Q ss_pred CCCeeEEEEecccCCCCchhhhhcCCCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeE-eCCCccccccc
Q 009315 401 PEKLTVFTLSLSHLSKDPMPVLGQLKELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWS-IEKETMPKLRE 479 (537)
Q Consensus 401 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 479 (537)
+..|+.+.+..+.. ......+.++++|+.+.+... +. .+....+.++.+|+.+.|.. .++.+. ..+..+.+|+.
T Consensus 264 c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 264 CAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLER 338 (394)
T ss_dssp CSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred cccccEEecccccc-eecCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCE
Confidence 36788887765432 234557788899999988532 22 23334478889999999965 355543 34567789999
Q ss_pred ccccccccCC-C-ccccCCCCCCCEEEEecCchHHHHHHHhhccCccceEEc
Q 009315 480 LEIRRCQKLK-N-PFESTNLTGLKELTLTDMEKSFEDEVKQSLAGTVNVVII 529 (537)
Q Consensus 480 L~l~~c~~l~-l-p~~~~~l~~L~~L~l~~c~n~~~~~~~~~~~~~~~l~~l 529 (537)
+.|-.+ +. + ...+.+|++|+.+++.+ +... ...+..+.+|+.+
T Consensus 339 i~ip~s--v~~I~~~aF~~C~~L~~i~~~~--~~~~---~~~~~~~~~L~~i 383 (394)
T 4gt6_A 339 IAIPSS--VTKIPESAFSNCTALNNIEYSG--SRSQ---WNAISTDSGLQNL 383 (394)
T ss_dssp EEECTT--CCBCCGGGGTTCTTCCEEEESS--CHHH---HHTCBCCCCC---
T ss_pred EEECcc--cCEEhHhHhhCCCCCCEEEECC--ceee---hhhhhccCCCCEE
Confidence 999644 33 4 45688999999999988 3221 1345556665553
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=3.5e-07 Score=78.13 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred CCCcceEEEeeecC--CcCCccccCCCCeeEEEEeccc-CCCCchhhhhcC----CCccEEEecccc-ccCceeeecCCC
Q 009315 378 HKKLTELYLIGKLP--RAIDINDQLPEKLTVFTLSLSH-LSKDPMPVLGQL----KELKILRLFAHS-YIGEQMTCQKGW 449 (537)
Q Consensus 378 ~~~L~~l~l~~~~~--~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l----~~L~~L~L~~~~-~~~~~~~~~~~~ 449 (537)
...|+.++++++.. ..+..+..+ ++|+.|+|++|. +++.....++.+ ++|++|+|++|. +++..... +..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~-~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGL-QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTC-SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCC-CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-Hhc
Confidence 35799999998632 233344444 899999999996 665566677765 479999999986 65544433 667
Q ss_pred CccccEEEeccCCCCce
Q 009315 450 FPQLLVLKLWVLKELKR 466 (537)
Q Consensus 450 ~~~L~~L~l~~~~~l~~ 466 (537)
+++|+.|++++|+.++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 88899999988877664
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=1.9e-06 Score=75.34 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=37.5
Q ss_pred CceeeEEEcCCC-CCCC-----CchhhccccccceeecCCCCCCc-----cCcccCCCCCCcEEeecCCcccc-----CC
Q 009315 204 YRLLRVLDLERV-YKPV-----LPETIGKLRLLRHVGLRWTFLDS-----IPKSLGDLPSLETLDVKRTNIAT-----LP 267 (537)
Q Consensus 204 ~~~L~~L~L~~~-~~~~-----lp~~~~~l~~L~~L~l~~~~i~~-----lp~~l~~l~~L~~L~L~~~~l~~-----lp 267 (537)
.+.|++|+|++| .++. +...+...++|++|+|++|.++. +...+...++|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 344555555544 4332 22333344455555555554431 22223334455555555554441 23
Q ss_pred ccccccccccEEec--cccccc
Q 009315 268 KSIWKSSTLRHLYM--SDIRFQ 287 (537)
Q Consensus 268 ~~i~~l~~L~~L~l--~~~~~~ 287 (537)
..+...+.|++|++ ++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHhCCCceEEEecCCCCCCC
Confidence 33444445555555 444443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=4.1e-07 Score=83.81 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=34.0
Q ss_pred cccccceeecCCCCCCcc---CcccCCCCCCcEEeecCCccccCCccccccc--cccEEecccccccc
Q 009315 226 KLRLLRHVGLRWTFLDSI---PKSLGDLPSLETLDVKRTNIATLPKSIWKSS--TLRHLYMSDIRFQL 288 (537)
Q Consensus 226 ~l~~L~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~ 288 (537)
++++|+.|+|++|.|..+ |..+..+++|++|+|++|.++.+ ..+..+. +|++|++++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcc
Confidence 455666666666655433 23344566666666666665544 2233333 66666666665544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=4.3e-06 Score=77.03 Aligned_cols=78 Identities=21% Similarity=0.092 Sum_probs=62.8
Q ss_pred CCceeeEEEcCCCCCCCCc---hhhccccccceeecCCCCCCccCcccCCCC--CCcEEeecCCccc-cCCc-------c
Q 009315 203 GYRLLRVLDLERVYKPVLP---ETIGKLRLLRHVGLRWTFLDSIPKSLGDLP--SLETLDVKRTNIA-TLPK-------S 269 (537)
Q Consensus 203 ~~~~L~~L~L~~~~~~~lp---~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~--~L~~L~L~~~~l~-~lp~-------~ 269 (537)
+++.|++|+|++|.+..++ ..+..+++|++|+|++|.|..+. .+..+. +|++|+|++|.+. .+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4789999999999888764 56789999999999999998773 344444 9999999999987 4552 3
Q ss_pred ccccccccEEec
Q 009315 270 IWKSSTLRHLYM 281 (537)
Q Consensus 270 i~~l~~L~~L~l 281 (537)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 567888888873
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=2.2e-06 Score=74.92 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=51.4
Q ss_pred hhhccccccceeecCCC-CCCc-----cCcccCCCCCCcEEeecCCccc-----cCCccccccccccEEecccccccc
Q 009315 222 ETIGKLRLLRHVGLRWT-FLDS-----IPKSLGDLPSLETLDVKRTNIA-----TLPKSIWKSSTLRHLYMSDIRFQL 288 (537)
Q Consensus 222 ~~~~~l~~L~~L~l~~~-~i~~-----lp~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~ 288 (537)
..+...+.|++|+|++| .++. +...+...++|++|+|++|.+. .+...+...+.|++|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 45667789999999998 8853 4555677889999999999876 244456666889999999887765
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.91 E-value=5e-05 Score=75.07 Aligned_cols=128 Identities=9% Similarity=0.051 Sum_probs=73.5
Q ss_pred HhccCCCcceEEEEeeCCCCCCCccccCCCCCCCCcceEEEeeecCCcCCccccCCCCeeEEEEecccCCCCchhhhhcC
Q 009315 346 WIKDLEHLESLMLRSVNDFLEPSDLDFGNLSKHKKLTELYLIGKLPRAIDINDQLPEKLTVFTLSLSHLSKDPMPVLGQL 425 (537)
Q Consensus 346 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l 425 (537)
.+..+..|+.+.+.. + ... ..-..+..+..|+.+.+...+.......+.-+.+|+.+.+..+ ++.....+|.+|
T Consensus 260 aF~~c~~L~~i~lp~-~-~~~---I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-S-VVS---IGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCT-T-CCE---ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeeecccccEEeccc-c-cce---ecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 466778888888753 2 111 1123455677888887754332222222333578999998754 443445688999
Q ss_pred CCccEEEeccccccCceeeecCCCCccccEEEeccCCCCceeEeCCCcccccccccccc
Q 009315 426 KELKILRLFAHSYIGEQMTCQKGWFPQLLVLKLWVLKELKRWSIEKETMPKLRELEIRR 484 (537)
Q Consensus 426 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 484 (537)
.+|+.+.|..+ ++. +....+.+|++|+.+.+.++. ..+ .....+.+|+.+.+..
T Consensus 334 ~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 334 EQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCH--HHH-HTCBCCCCC-------
T ss_pred CCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeCC
Confidence 99999999654 322 233347889999999997742 112 1233456666666644
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.60 E-value=0.00068 Score=66.45 Aligned_cols=54 Identities=4% Similarity=-0.062 Sum_probs=25.3
Q ss_pred CceeeEEEcCCCCCCCCc-hhhccccccceeecCCCCCCccCcccCCCCCCcEEeecC
Q 009315 204 YRLLRVLDLERVYKPVLP-ETIGKLRLLRHVGLRWTFLDSIPKSLGDLPSLETLDVKR 260 (537)
Q Consensus 204 ~~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 260 (537)
|.+|+.+++..+ +..+. .+|.++ .|+.+.+.. .+..+++......+|+.+.+..
T Consensus 68 C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 68 CYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred CCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 566666666533 33332 344444 455544432 2344443322233566666544
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.27 E-value=0.0033 Score=61.53 Aligned_cols=101 Identities=8% Similarity=-0.007 Sum_probs=50.9
Q ss_pred CCCcCceeEEEeccCCCCCCChhhhhhhhhhhccccCCceeeEEEcCCCCCCCCch-hhccccccceeecCCCCCCccCc
Q 009315 167 GKHLERLHSYLSFDNRKGDKPAAEVGNLLNRTISKRGYRLLRVLDLERVYKPVLPE-TIGKLRLLRHVGLRWTFLDSIPK 245 (537)
Q Consensus 167 ~~~~~~Lr~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~ 245 (537)
+..+.+|+++.+.++ ...+....|.+ + .|..+.+..+ +..+.. +|.. .+|+.+.+..+ +..+..
T Consensus 65 F~~C~~L~~I~lp~~-v~~Ig~~aF~~----------c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~ 129 (379)
T 4h09_A 65 FNSCYNMTKVTVAST-VTSIGDGAFAD----------T-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA-TTEIGN 129 (379)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTT----------C-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT-CCEECT
T ss_pred hhCCCCCCEEEeCCc-ceEechhhhcC----------C-CCceEECCce-eeEeccceecc-CCcccccCCCc-cccccc
Confidence 566778888776543 34555554543 3 4556655433 344433 3433 47888888654 333433
Q ss_pred ccCCCCCCcEEeecCCccccC-CccccccccccEEeccc
Q 009315 246 SLGDLPSLETLDVKRTNIATL-PKSIWKSSTLRHLYMSD 283 (537)
Q Consensus 246 ~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 283 (537)
....-.+|+...+..+ ++.+ ...+..+.++..+.+..
T Consensus 130 ~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 130 YIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred cccccceeeeeeccce-eeccccchhccccccccccccc
Confidence 3222234555554432 2222 22344556666655543
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.00 E-value=0.011 Score=47.75 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=25.6
Q ss_pred EEEcCCCCCC--CCchhhccccccceeecCCCCCCccCcc-cCCCCCCcEEeecCCc
Q 009315 209 VLDLERVYKP--VLPETIGKLRLLRHVGLRWTFLDSIPKS-LGDLPSLETLDVKRTN 262 (537)
Q Consensus 209 ~L~L~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~ 262 (537)
+++.+++.++ .+|..+. .+|++|+|++|.|..||.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555554 5553321 2455555555555555433 3445555555555553
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.66 E-value=0.016 Score=46.79 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=40.5
Q ss_pred ceeecCCCCCC--ccCcccCCCCCCcEEeecCCccccCCcc-ccccccccEEeccccccc
Q 009315 231 RHVGLRWTFLD--SIPKSLGDLPSLETLDVKRTNIATLPKS-IWKSSTLRHLYMSDIRFQ 287 (537)
Q Consensus 231 ~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 287 (537)
..++.+++.++ .+|..+. .+|++|+|++|+|+.+|.. +..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777777 7876542 4688888888888887764 467888888888887654
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.05 E-value=0.012 Score=50.96 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=17.4
Q ss_pred CCCCcEEeecCCccc-----cCCccccccccccEEeccccccc
Q 009315 250 LPSLETLDVKRTNIA-----TLPKSIWKSSTLRHLYMSDIRFQ 287 (537)
Q Consensus 250 l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~ 287 (537)
-..|+.|+|++|.+. .+...+..-+.|++|+|++|.+.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344455555554443 12223333445555555555544
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.83 E-value=0.022 Score=49.35 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=53.4
Q ss_pred CceeeEEEcCCC-CCCC-----CchhhccccccceeecCCCCCC-----ccCcccCCCCCCcEEeecCCccc-----cCC
Q 009315 204 YRLLRVLDLERV-YKPV-----LPETIGKLRLLRHVGLRWTFLD-----SIPKSLGDLPSLETLDVKRTNIA-----TLP 267 (537)
Q Consensus 204 ~~~L~~L~L~~~-~~~~-----lp~~~~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~l~-----~lp 267 (537)
-+.|+.|+|+++ .++. +-..+..-+.|+.|+|++|.|+ .|-+.+..-+.|++|+|+.|.|. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467888888864 5543 3345555678888888888874 23334445678889999888876 223
Q ss_pred ccccccccccEEecccc
Q 009315 268 KSIWKSSTLRHLYMSDI 284 (537)
Q Consensus 268 ~~i~~l~~L~~L~l~~~ 284 (537)
..+..-+.|++|+++++
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 33444456778877654
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=40.29 E-value=33 Score=32.87 Aligned_cols=72 Identities=14% Similarity=0.037 Sum_probs=44.5
Q ss_pred hHHHHhcCCCcHhHHHHhhhhccCC--CCcccchhhHHHHHHH-h-cccccccCCCCChHHHHHHHHHHHhhccceEeee
Q 009315 26 SIWVFANKSLSPHLKACLHYFRLFP--KSYEVSVRRLLQLWLA-E-RLETPIEENYMAPEDQVKTIFDQLELMNMIEVVK 101 (537)
Q Consensus 26 ~~L~lSY~~L~~~lk~cFl~~a~Fp--~~~~i~~~~Li~~Wia-~-g~i~~~~~~~~~~~~~g~~~~~~L~~~~ll~~~~ 101 (537)
..+.-+++.||++.|.++..+|.+. .+..+...++...|.. . ....... ........|++.|++.++|....
T Consensus 297 ~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 297 SIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKP----RGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp ---CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCC----CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCC----CCHHHHHHHHHHHHhCCCEEeec
Confidence 3455567899999999999888654 3335566666665532 1 1111111 12345668899999999997653
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=39.62 E-value=7 Score=36.43 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=38.8
Q ss_pred HHHhcCCCcHhHHHHhhhhccCCCCcc-----------cchhhHHH----HHHHhcccccccCCCCChHHHHHHHHH-HH
Q 009315 28 WVFANKSLSPHLKACLHYFRLFPKSYE-----------VSVRRLLQ----LWLAERLETPIEENYMAPEDQVKTIFD-QL 91 (537)
Q Consensus 28 L~lSY~~L~~~lk~cFl~~a~Fp~~~~-----------i~~~~Li~----~Wia~g~i~~~~~~~~~~~~~g~~~~~-~L 91 (537)
+..++..++...+..+....-.-.+-. +++..+.+ +-+..|++.....+. .+++.|..||+ ++
T Consensus 238 ~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~-~~~~~~~~~~~~~~ 316 (324)
T 1hqc_A 238 LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR-VPTELAYRHLGYPP 316 (324)
T ss_dssp HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEE-EECHHHHHHTTCCC
T ss_pred hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccc-eecHHHHHHHhcCC
Confidence 344556677766666665442222221 33333332 355678887655554 78889999997 88
Q ss_pred hhccceEe
Q 009315 92 ELMNMIEV 99 (537)
Q Consensus 92 ~~~~ll~~ 99 (537)
.+|++||+
T Consensus 317 ~~~~~~~~ 324 (324)
T 1hqc_A 317 PVGPLLEP 324 (324)
T ss_dssp CC------
T ss_pred CCCCCCCC
Confidence 99998885
Done!