Query 009316
Match_columns 537
No_of_seqs 408 out of 3674
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 23:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 5E-125 1E-129 965.3 42.8 453 70-522 1-453 (645)
2 KOG0238 3-Methylcrotonyl-CoA c 100.0 1E-120 2E-125 918.2 39.7 451 74-524 1-452 (670)
3 COG1038 PycA Pyruvate carboxyl 100.0 5E-107 1E-111 852.1 46.2 450 69-518 5-462 (1149)
4 COG0439 AccC Biotin carboxylas 100.0 6E-102 1E-106 809.2 49.0 446 70-515 1-446 (449)
5 PRK08654 pyruvate carboxylase 100.0 1.1E-96 2E-101 794.0 55.0 443 70-513 1-443 (499)
6 KOG0369 Pyruvate carboxylase [ 100.0 7.1E-97 2E-101 761.6 41.0 447 71-517 33-484 (1176)
7 PRK07178 pyruvate carboxylase 100.0 4.8E-91 1E-95 749.7 54.5 446 70-517 1-446 (472)
8 PRK08463 acetyl-CoA carboxylas 100.0 7.8E-91 1.7E-95 748.7 54.7 449 70-519 1-450 (478)
9 PRK12833 acetyl-CoA carboxylas 100.0 3.6E-90 7.7E-95 742.0 55.1 452 69-521 3-455 (467)
10 TIGR01235 pyruv_carbox pyruvat 100.0 1E-90 2.2E-95 798.1 52.9 445 73-517 1-455 (1143)
11 PRK12999 pyruvate carboxylase; 100.0 2.9E-86 6.3E-91 765.1 56.3 449 69-517 3-459 (1146)
12 PRK05586 biotin carboxylase; V 100.0 1.9E-85 4.2E-90 703.2 53.1 445 70-514 1-445 (447)
13 TIGR00514 accC acetyl-CoA carb 100.0 3.7E-84 8.1E-89 693.9 54.0 446 70-515 1-446 (449)
14 PRK08462 biotin carboxylase; V 100.0 5.8E-82 1.3E-86 676.7 54.0 443 70-514 3-445 (445)
15 PRK08591 acetyl-CoA carboxylas 100.0 8E-81 1.7E-85 669.4 54.0 446 70-515 1-446 (451)
16 TIGR02712 urea_carbox urea car 100.0 5.3E-77 1.1E-81 691.7 55.2 440 71-513 1-443 (1201)
17 KOG0368 Acetyl-CoA carboxylase 100.0 8.1E-74 1.7E-78 626.6 37.3 448 65-516 48-553 (2196)
18 PRK06111 acetyl-CoA carboxylas 100.0 8.6E-70 1.9E-74 583.9 54.0 444 70-514 1-444 (450)
19 PLN02948 phosphoribosylaminoim 100.0 8.4E-45 1.8E-49 396.6 44.0 384 66-482 17-402 (577)
20 TIGR01369 CPSaseII_lrg carbamo 100.0 5.3E-45 1.1E-49 424.1 43.6 376 70-478 5-401 (1050)
21 TIGR01142 purT phosphoribosylg 100.0 2.2E-44 4.9E-49 378.7 44.1 375 73-482 1-380 (380)
22 PLN02735 carbamoyl-phosphate s 100.0 6.2E-45 1.3E-49 422.1 40.4 340 70-428 573-942 (1102)
23 PF02786 CPSase_L_D2: Carbamoy 100.0 1.1E-45 2.3E-50 354.8 25.2 208 184-391 1-209 (211)
24 PLN02735 carbamoyl-phosphate s 100.0 9E-44 2E-48 412.5 43.7 378 70-478 22-420 (1102)
25 PRK06019 phosphoribosylaminoim 100.0 2.7E-43 5.8E-48 368.8 42.7 364 71-477 2-366 (372)
26 PRK09288 purT phosphoribosylgl 100.0 5.5E-42 1.2E-46 362.4 44.2 381 71-483 12-394 (395)
27 PRK07206 hypothetical protein; 100.0 1.1E-41 2.3E-46 362.6 40.4 382 70-476 1-405 (416)
28 TIGR01161 purK phosphoribosyla 100.0 1E-40 2.2E-45 347.4 39.1 351 73-464 1-352 (352)
29 PRK05294 carB carbamoyl phosph 100.0 1.3E-40 2.8E-45 388.7 44.5 396 70-499 6-429 (1066)
30 PRK02186 argininosuccinate lya 100.0 3.7E-40 8E-45 379.0 45.3 379 71-482 2-395 (887)
31 PRK12815 carB carbamoyl phosph 100.0 6.4E-40 1.4E-44 381.8 44.3 408 70-512 6-462 (1068)
32 PRK00885 phosphoribosylamine-- 100.0 1.8E-38 4E-43 338.0 43.1 387 72-485 1-408 (420)
33 PRK13789 phosphoribosylamine-- 100.0 3.2E-38 6.8E-43 334.7 43.4 387 71-484 4-415 (426)
34 TIGR00877 purD phosphoribosyla 100.0 4.2E-38 9E-43 335.7 42.7 389 72-484 1-411 (423)
35 TIGR01369 CPSaseII_lrg carbamo 100.0 4.6E-38 1E-42 366.1 41.2 304 71-391 554-870 (1050)
36 PLN02257 phosphoribosylamine-- 100.0 4E-37 8.7E-42 326.4 44.4 389 75-485 1-415 (434)
37 PRK06395 phosphoribosylamine-- 100.0 5.4E-37 1.2E-41 326.0 41.9 389 70-483 1-410 (435)
38 PRK12815 carB carbamoyl phosph 100.0 3.2E-37 6.9E-42 359.2 42.9 364 70-476 554-930 (1068)
39 COG0458 CarB Carbamoylphosphat 100.0 5.5E-37 1.2E-41 310.0 36.8 375 72-478 6-389 (400)
40 PRK05294 carB carbamoyl phosph 100.0 5E-37 1.1E-41 358.7 40.7 305 70-391 553-870 (1066)
41 COG0026 PurK Phosphoribosylami 100.0 2E-36 4.4E-41 302.4 38.7 365 71-479 1-368 (375)
42 PRK05784 phosphoribosylamine-- 100.0 1.6E-35 3.5E-40 317.2 43.9 390 72-485 1-436 (486)
43 PRK12767 carbamoyl phosphate s 100.0 1.6E-36 3.5E-41 312.5 34.4 293 71-391 1-298 (326)
44 PRK13790 phosphoribosylamine-- 100.0 3.4E-36 7.4E-41 315.5 36.0 334 128-485 12-366 (379)
45 COG0027 PurT Formate-dependent 100.0 6.4E-35 1.4E-39 281.6 33.4 380 71-482 12-393 (394)
46 PRK14569 D-alanyl-alanine synt 100.0 1.3E-32 2.9E-37 279.4 32.0 273 71-385 3-292 (296)
47 PRK06524 biotin carboxylase-li 100.0 1.3E-32 2.8E-37 289.2 30.5 252 134-397 95-362 (493)
48 PRK01966 ddl D-alanyl-alanine 100.0 9.8E-33 2.1E-37 284.9 28.6 299 70-384 2-327 (333)
49 COG0151 PurD Phosphoribosylami 100.0 3.6E-31 7.7E-36 268.4 38.7 385 72-485 1-413 (428)
50 PRK01372 ddl D-alanine--D-alan 100.0 8.3E-32 1.8E-36 274.8 31.9 277 69-384 2-296 (304)
51 PF15632 ATPgrasp_Ter: ATP-gra 100.0 1.4E-31 2.9E-36 271.0 31.5 294 75-392 2-310 (329)
52 PRK06849 hypothetical protein; 100.0 5.3E-32 1.1E-36 285.6 26.5 279 71-370 4-284 (389)
53 TIGR01205 D_ala_D_alaTIGR D-al 100.0 3.4E-31 7.5E-36 271.6 30.0 274 83-385 20-312 (315)
54 PRK14568 vanB D-alanine--D-lac 100.0 2.7E-31 5.9E-36 275.3 28.8 292 71-383 3-335 (343)
55 PF02785 Biotin_carb_C: Biotin 100.0 1.8E-33 3.8E-38 239.1 8.3 107 405-511 1-107 (107)
56 PRK14572 D-alanyl-alanine synt 100.0 1.4E-30 3.1E-35 270.1 31.3 302 72-384 2-341 (347)
57 PRK14570 D-alanyl-alanine synt 100.0 1.9E-30 4.2E-35 269.6 30.1 305 71-386 2-347 (364)
58 smart00878 Biotin_carb_C Bioti 100.0 6E-32 1.3E-36 230.1 10.9 107 405-511 1-107 (107)
59 PRK14571 D-alanyl-alanine synt 100.0 7.1E-29 1.5E-33 252.7 31.9 269 73-386 2-296 (299)
60 PRK14573 bifunctional D-alanyl 100.0 3.1E-28 6.6E-33 278.6 33.5 297 71-382 451-780 (809)
61 COG2232 Predicted ATP-dependen 100.0 3E-27 6.5E-32 230.2 26.9 349 71-478 11-371 (389)
62 PRK10446 ribosomal protein S6 99.9 7.2E-26 1.6E-30 230.6 28.0 276 73-388 2-289 (300)
63 TIGR00768 rimK_fam alpha-L-glu 99.9 1.5E-25 3.3E-30 225.1 28.1 264 79-384 9-276 (277)
64 PF13535 ATP-grasp_4: ATP-gras 99.9 2.9E-26 6.4E-31 215.8 19.8 177 181-366 1-183 (184)
65 PRK13278 purP 5-formaminoimida 99.9 1.2E-24 2.6E-29 223.7 30.4 267 73-365 20-315 (358)
66 KOG0370 Multifunctional pyrimi 99.9 4.5E-27 9.8E-32 252.0 12.5 383 69-485 375-776 (1435)
67 KOG0370 Multifunctional pyrimi 99.9 3E-25 6.5E-30 238.2 25.2 377 71-476 918-1319(1435)
68 TIGR02144 LysX_arch Lysine bio 99.9 9.2E-25 2E-29 220.2 27.7 263 83-386 12-276 (280)
69 PRK13277 5-formaminoimidazole- 99.9 2.8E-24 6.1E-29 217.5 27.8 294 73-391 19-349 (366)
70 KOG0237 Glycinamide ribonucleo 99.9 1.8E-23 4E-28 216.0 33.2 396 71-491 2-425 (788)
71 PF00289 CPSase_L_chain: Carba 99.9 3.5E-26 7.6E-31 196.5 10.6 110 70-179 1-110 (110)
72 COG1181 DdlA D-alanine-D-alani 99.9 2.9E-23 6.3E-28 210.6 27.1 269 83-384 23-312 (317)
73 TIGR03103 trio_acet_GNAT GNAT- 99.9 2.5E-24 5.5E-29 234.8 15.2 270 86-385 203-540 (547)
74 PF02222 ATP-grasp: ATP-grasp 99.9 5.6E-23 1.2E-27 190.7 19.9 167 192-370 1-169 (172)
75 PF07478 Dala_Dala_lig_C: D-al 99.9 7.8E-23 1.7E-27 195.9 18.9 184 191-384 1-201 (203)
76 PRK14016 cyanophycin synthetas 99.9 9.3E-23 2E-27 229.4 18.6 255 103-386 141-472 (727)
77 COG0189 RimK Glutathione synth 99.9 6.2E-20 1.3E-24 186.8 23.8 285 82-385 18-311 (318)
78 PF01071 GARS_A: Phosphoribosy 99.9 2.4E-20 5.3E-25 174.8 18.1 174 183-363 1-190 (194)
79 PF02655 ATP-grasp_3: ATP-gras 99.8 1E-20 2.2E-25 175.1 10.2 156 182-364 1-160 (161)
80 PF08443 RimK: RimK-like ATP-g 99.8 1.5E-19 3.3E-24 171.8 15.7 182 182-383 1-188 (190)
81 COG3919 Predicted ATP-grasp en 99.8 1.1E-18 2.4E-23 167.9 17.9 297 73-389 5-314 (415)
82 PRK12458 glutathione synthetas 99.8 1.8E-16 4E-21 163.6 25.2 277 79-386 9-322 (338)
83 COG1821 Predicted ATP-utilizin 99.7 2.7E-16 5.8E-21 148.9 18.4 194 158-390 89-284 (307)
84 TIGR02068 cya_phycin_syn cyano 99.7 6.6E-16 1.4E-20 177.3 22.9 241 131-386 160-471 (864)
85 TIGR01380 glut_syn glutathione 99.7 3E-15 6.5E-20 153.2 24.2 273 82-385 19-308 (312)
86 PRK05246 glutathione synthetas 99.7 2.6E-15 5.6E-20 154.1 23.8 275 82-387 20-311 (316)
87 TIGR01435 glu_cys_lig_rel glut 99.7 1.5E-15 3.4E-20 168.2 21.1 198 174-384 465-735 (737)
88 PRK02471 bifunctional glutamat 99.7 3.3E-15 7.2E-20 168.0 22.5 243 128-384 430-749 (752)
89 PLN02941 inositol-tetrakisphos 99.7 1.6E-14 3.5E-19 147.0 22.1 226 83-363 38-305 (328)
90 COG1759 5-formaminoimidazole-4 99.6 4.7E-13 1E-17 131.0 25.1 267 79-367 25-320 (361)
91 TIGR02291 rimK_rel_E_lig alpha 99.5 3.7E-13 8E-18 136.1 19.5 205 173-384 26-291 (317)
92 PF14398 ATPgrasp_YheCD: YheC/ 99.2 1E-09 2.3E-14 109.4 17.7 185 164-364 4-235 (262)
93 TIGR01016 sucCoAbeta succinyl- 99.1 2.8E-09 6E-14 112.6 19.6 173 184-358 4-214 (386)
94 PRK00696 sucC succinyl-CoA syn 99.1 4.3E-09 9.2E-14 111.2 19.2 109 184-294 4-125 (388)
95 PF14397 ATPgrasp_ST: Sugar-tr 99.1 1.2E-08 2.5E-13 103.1 19.8 197 174-378 16-273 (285)
96 PF13549 ATP-grasp_5: ATP-gras 98.8 1.9E-08 4E-13 97.5 11.1 174 183-362 10-207 (222)
97 PF02955 GSH-S_ATP: Prokaryoti 98.6 3.4E-07 7.3E-12 85.2 9.4 146 199-363 12-163 (173)
98 PRK14046 malate--CoA ligase su 98.5 4.4E-06 9.5E-11 88.1 18.9 108 185-294 5-125 (392)
99 COG0045 SucC Succinyl-CoA synt 98.5 2.6E-06 5.7E-11 86.8 14.9 107 185-293 5-122 (387)
100 PLN00124 succinyl-CoA ligase [ 98.5 6.8E-06 1.5E-10 86.9 18.3 107 183-292 30-159 (422)
101 PF08442 ATP-grasp_2: ATP-gras 98.2 2E-06 4.4E-11 82.1 6.6 102 185-288 4-117 (202)
102 PF02750 Synapsin_C: Synapsin, 98.2 3.7E-05 8.1E-10 71.4 14.5 167 174-361 1-177 (203)
103 PLN02235 ATP citrate (pro-S)-l 98.2 6.5E-05 1.4E-09 78.8 18.0 107 185-293 8-132 (423)
104 PF05770 Ins134_P3_kin: Inosit 98.1 2E-05 4.3E-10 79.8 11.6 181 160-363 69-290 (307)
105 PF14305 ATPgrasp_TupA: TupA-l 98.1 0.00011 2.5E-09 72.2 16.3 179 177-365 13-221 (239)
106 PF02844 GARS_N: Phosphoribosy 97.9 0.00012 2.6E-09 61.5 10.3 95 72-181 1-99 (100)
107 PF03133 TTL: Tubulin-tyrosine 97.7 0.0002 4.3E-09 72.7 10.9 55 223-286 67-128 (292)
108 KOG3895 Synaptic vesicle prote 97.4 0.00066 1.4E-08 68.0 9.0 201 140-360 152-365 (488)
109 PF06849 DUF1246: Protein of u 97.3 0.0004 8.6E-09 59.9 5.3 113 80-202 6-122 (124)
110 PF06973 DUF1297: Domain of un 97.1 0.0058 1.3E-07 56.4 11.2 100 264-365 21-145 (188)
111 PF14403 CP_ATPgrasp_2: Circul 96.9 0.0063 1.4E-07 64.7 11.2 195 42-274 161-385 (445)
112 PF11379 DUF3182: Protein of u 96.6 0.05 1.1E-06 55.1 13.6 150 137-299 59-210 (355)
113 PF14243 DUF4343: Domain of un 96.5 0.04 8.6E-07 49.0 11.6 114 222-362 2-116 (130)
114 TIGR00715 precor6x_red precorr 96.1 0.05 1.1E-06 54.1 10.6 93 72-172 1-96 (256)
115 PF13380 CoA_binding_2: CoA bi 95.8 0.084 1.8E-06 45.9 9.7 98 72-177 1-111 (116)
116 PRK08057 cobalt-precorrin-6x r 95.4 0.16 3.5E-06 50.2 11.3 94 70-172 1-96 (248)
117 COG2099 CobK Precorrin-6x redu 95.2 0.22 4.9E-06 48.7 11.1 94 70-172 1-97 (257)
118 CHL00194 ycf39 Ycf39; Provisio 95.1 0.35 7.5E-06 49.5 13.3 119 72-199 1-139 (317)
119 KOG2157 Predicted tubulin-tyro 94.9 0.15 3.2E-06 55.1 9.8 75 221-297 199-281 (497)
120 COG1064 AdhP Zn-dependent alco 94.6 0.23 4.9E-06 51.2 9.9 159 68-255 164-326 (339)
121 COG1748 LYS9 Saccharopine dehy 94.0 0.21 4.5E-06 52.5 8.4 118 71-202 1-122 (389)
122 PF05368 NmrA: NmrA-like famil 93.9 0.49 1.1E-05 45.9 10.4 117 74-199 1-137 (233)
123 PLN00016 RNA-binding protein; 93.8 0.49 1.1E-05 49.8 10.9 101 65-175 46-164 (378)
124 PF02571 CbiJ: Precorrin-6x re 93.5 0.51 1.1E-05 46.8 9.8 94 72-172 1-97 (249)
125 KOG2799 Succinyl-CoA synthetas 93.2 0.4 8.8E-06 48.9 8.5 74 179-254 21-106 (434)
126 PRK05849 hypothetical protein; 93.0 5.6 0.00012 45.9 18.3 171 181-359 7-213 (783)
127 PRK03659 glutathione-regulated 92.8 0.14 2.9E-06 57.6 5.1 116 71-200 400-515 (601)
128 KOG2156 Tubulin-tyrosine ligas 92.7 0.81 1.8E-05 48.9 10.2 64 197-274 280-344 (662)
129 COG0569 TrkA K+ transport syst 92.6 0.33 7.1E-06 47.4 6.9 110 72-196 1-113 (225)
130 PLN02657 3,8-divinyl protochlo 92.6 3.1 6.8E-05 44.0 14.8 75 69-150 58-143 (390)
131 PRK04148 hypothetical protein; 92.5 0.28 6E-06 43.7 5.7 73 72-150 18-109 (134)
132 PF07065 D123: D123; InterPro 92.5 9.4 0.0002 38.9 17.4 141 211-363 75-240 (299)
133 PLN02819 lysine-ketoglutarate 92.2 0.98 2.1E-05 53.4 11.2 164 70-250 568-763 (1042)
134 TIGR02964 xanthine_xdhC xanthi 91.9 1.2 2.6E-05 44.1 10.0 35 71-105 100-134 (246)
135 PF02254 TrkA_N: TrkA-N domain 91.7 0.12 2.6E-06 44.4 2.3 112 74-199 1-112 (116)
136 TIGR01470 cysG_Nterm siroheme 91.6 0.62 1.3E-05 44.8 7.4 32 71-102 9-40 (205)
137 COG1087 GalE UDP-glucose 4-epi 91.5 0.84 1.8E-05 46.0 8.3 70 72-148 1-72 (329)
138 PRK03562 glutathione-regulated 91.4 0.28 6E-06 55.3 5.5 137 71-223 400-537 (621)
139 COG2910 Putative NADH-flavin r 91.4 1.2 2.7E-05 41.6 8.6 72 72-154 1-73 (211)
140 PRK10669 putative cation:proto 91.3 0.44 9.6E-06 53.0 7.0 134 71-223 417-550 (558)
141 KOG1057 Arp2/3 complex-interac 90.6 0.13 2.8E-06 57.0 1.8 185 165-362 111-323 (1018)
142 PRK06718 precorrin-2 dehydroge 90.6 1.1 2.4E-05 43.0 7.9 31 71-101 10-40 (202)
143 PF13460 NAD_binding_10: NADH( 90.5 1.7 3.8E-05 40.1 9.2 68 74-152 1-69 (183)
144 PRK06988 putative formyltransf 89.6 1.2 2.6E-05 45.7 7.9 38 70-107 1-38 (312)
145 PF13478 XdhC_C: XdhC Rossmann 89.5 0.79 1.7E-05 41.0 5.6 85 74-173 1-85 (136)
146 PRK13303 L-aspartate dehydroge 89.2 2.3 5.1E-05 42.5 9.4 113 72-198 2-115 (265)
147 PRK06719 precorrin-2 dehydroge 89.0 1.4 3.1E-05 40.4 7.1 31 71-101 13-43 (157)
148 PF01820 Dala_Dala_lig_N: D-al 89.0 0.92 2E-05 39.4 5.5 88 83-174 21-117 (117)
149 PF04321 RmlD_sub_bind: RmlD s 88.0 1.1 2.5E-05 45.2 6.3 86 72-179 1-104 (286)
150 TIGR01285 nifN nitrogenase mol 87.4 3.2 7E-05 44.6 9.6 85 71-172 311-395 (432)
151 PF00070 Pyr_redox: Pyridine n 87.1 1.4 3E-05 35.1 5.2 32 73-104 1-32 (80)
152 cd03466 Nitrogenase_NifN_2 Nit 87.0 4 8.7E-05 43.8 10.1 88 71-172 300-394 (429)
153 PRK10537 voltage-gated potassi 86.8 1.8 4E-05 45.8 7.3 113 71-199 240-352 (393)
154 PLN02695 GDP-D-mannose-3',5'-e 86.8 2.9 6.4E-05 43.8 8.8 68 72-148 22-90 (370)
155 PF13241 NAD_binding_7: Putati 86.7 0.68 1.5E-05 39.2 3.3 82 71-171 7-88 (103)
156 TIGR03025 EPS_sugtrans exopoly 86.7 3.9 8.6E-05 44.0 10.0 89 71-171 125-218 (445)
157 COG0702 Predicted nucleoside-d 86.4 14 0.00031 36.1 13.2 118 72-199 1-136 (275)
158 PRK09496 trkA potassium transp 86.0 2.1 4.7E-05 46.0 7.5 92 70-168 230-322 (453)
159 PF02639 DUF188: Uncharacteriz 85.9 17 0.00037 32.2 11.8 116 86-218 2-122 (130)
160 PF01113 DapB_N: Dihydrodipico 85.8 2.5 5.4E-05 37.0 6.5 32 72-103 1-34 (124)
161 PRK00208 thiG thiazole synthas 85.6 14 0.00031 36.3 12.0 149 82-262 77-232 (250)
162 cd04728 ThiG Thiazole synthase 85.4 10 0.00022 37.3 10.9 149 82-262 77-232 (248)
163 KOG1447 GTP-specific succinyl- 85.1 6 0.00013 39.0 9.1 106 185-292 24-150 (412)
164 COG0771 MurD UDP-N-acetylmuram 84.9 5.6 0.00012 42.8 9.8 89 71-173 7-98 (448)
165 PLN02572 UDP-sulfoquinovose sy 84.7 8.3 0.00018 41.6 11.2 33 69-101 45-78 (442)
166 TIGR03649 ergot_EASG ergot alk 84.6 7.1 0.00015 38.9 10.1 66 73-148 1-72 (285)
167 PRK05472 redox-sensing transcr 84.4 8.6 0.00019 37.0 10.1 89 71-172 84-174 (213)
168 PF01370 Epimerase: NAD depend 83.8 4.1 8.9E-05 39.0 7.7 72 74-152 1-74 (236)
169 TIGR03023 WcaJ_sugtrans Undeca 83.7 6.6 0.00014 42.4 10.0 89 71-171 128-221 (451)
170 cd01965 Nitrogenase_MoFe_beta_ 83.7 3.9 8.5E-05 43.8 8.2 86 71-172 299-393 (428)
171 PLN03209 translocon at the inn 83.7 8.4 0.00018 42.7 10.7 37 69-105 78-115 (576)
172 PRK10217 dTDP-glucose 4,6-dehy 83.4 5.9 0.00013 40.9 9.2 73 71-150 1-81 (355)
173 COG0289 DapB Dihydrodipicolina 83.4 13 0.00028 36.9 10.8 110 70-186 1-136 (266)
174 COG1832 Predicted CoA-binding 83.3 3 6.4E-05 37.1 5.7 97 71-172 16-124 (140)
175 PRK06552 keto-hydroxyglutarate 83.3 11 0.00024 36.4 10.3 28 74-101 18-45 (213)
176 PRK05993 short chain dehydroge 83.2 4.8 0.0001 40.1 8.2 35 70-104 3-38 (277)
177 cd01075 NAD_bind_Leu_Phe_Val_D 83.2 15 0.00033 34.9 11.2 109 71-202 28-138 (200)
178 PRK05693 short chain dehydroge 83.2 4.1 8.9E-05 40.4 7.7 33 71-103 1-34 (274)
179 PRK12475 thiamine/molybdopteri 83.2 2.9 6.3E-05 43.4 6.7 122 71-202 24-147 (338)
180 PLN00141 Tic62-NAD(P)-related 83.0 9.4 0.0002 37.4 10.0 35 71-105 17-52 (251)
181 KOG2774 NAD dependent epimeras 83.0 9.4 0.0002 37.2 9.3 70 71-148 44-115 (366)
182 PRK12446 undecaprenyldiphospho 82.9 6.1 0.00013 41.2 9.0 100 71-172 1-118 (352)
183 PRK01368 murD UDP-N-acetylmura 82.9 15 0.00032 39.8 12.2 92 70-178 5-96 (454)
184 COG1671 Uncharacterized protei 82.8 36 0.00079 30.8 13.1 107 79-199 10-121 (150)
185 PRK10124 putative UDP-glucose 82.8 8.5 0.00018 41.8 10.3 86 71-171 143-233 (463)
186 PRK08177 short chain dehydroge 82.5 4.6 0.0001 38.7 7.5 75 71-152 1-80 (225)
187 PRK05562 precorrin-2 dehydroge 82.3 5.3 0.00012 38.9 7.6 31 72-102 26-56 (223)
188 PRK12825 fabG 3-ketoacyl-(acyl 82.2 6.3 0.00014 37.8 8.4 35 68-102 3-38 (249)
189 TIGR03466 HpnA hopanoid-associ 82.2 6 0.00013 40.0 8.5 68 72-148 1-69 (328)
190 PRK09496 trkA potassium transp 82.1 3.5 7.5E-05 44.3 7.1 34 72-105 1-34 (453)
191 PRK13302 putative L-aspartate 81.9 11 0.00024 37.8 10.1 117 69-202 4-124 (271)
192 cd05211 NAD_bind_Glu_Leu_Phe_V 81.8 2.5 5.5E-05 40.9 5.3 32 70-101 22-53 (217)
193 PF13727 CoA_binding_3: CoA-bi 81.8 5.2 0.00011 36.4 7.2 89 72-171 78-171 (175)
194 cd01976 Nitrogenase_MoFe_alpha 81.6 4 8.7E-05 43.7 7.2 88 71-172 300-391 (421)
195 COG1648 CysG Siroheme synthase 81.4 3.7 7.9E-05 39.6 6.1 32 71-102 12-43 (210)
196 PRK08017 oxidoreductase; Provi 81.3 7.3 0.00016 37.9 8.5 36 70-105 1-37 (256)
197 PRK00124 hypothetical protein; 81.2 43 0.00093 30.5 14.0 114 73-199 2-122 (151)
198 PRK12826 3-ketoacyl-(acyl-carr 80.9 6.1 0.00013 38.2 7.7 35 69-103 4-39 (251)
199 PF03435 Saccharop_dh: Sacchar 80.8 4.2 9.1E-05 42.8 7.0 115 74-202 1-121 (386)
200 PRK05678 succinyl-CoA syntheta 80.8 13 0.00028 37.7 10.2 109 71-185 8-133 (291)
201 TIGR02717 AcCoA-syn-alpha acet 80.6 14 0.0003 40.0 10.9 109 71-185 7-138 (447)
202 TIGR01283 nifE nitrogenase mol 80.6 8.3 0.00018 41.8 9.3 88 71-172 326-417 (456)
203 PLN02775 Probable dihydrodipic 80.3 34 0.00073 34.6 12.7 71 72-148 12-84 (286)
204 TIGR00518 alaDH alanine dehydr 80.3 4.3 9.3E-05 42.7 6.7 71 71-150 167-237 (370)
205 TIGR02355 moeB molybdopterin s 80.1 16 0.00035 36.0 10.4 31 71-101 24-54 (240)
206 PRK00048 dihydrodipicolinate r 80.0 21 0.00044 35.5 11.2 87 72-174 2-91 (257)
207 TIGR02622 CDP_4_6_dhtase CDP-g 80.0 9 0.0002 39.6 9.1 75 71-150 4-82 (349)
208 PRK09987 dTDP-4-dehydrorhamnos 79.9 6.9 0.00015 39.6 8.0 58 72-148 1-59 (299)
209 PRK08267 short chain dehydroge 79.9 5.6 0.00012 39.0 7.2 34 71-104 1-35 (260)
210 CHL00162 thiG thiamin biosynth 79.9 50 0.0011 32.7 13.3 119 131-262 122-246 (267)
211 PF02826 2-Hacid_dh_C: D-isome 79.8 5.4 0.00012 37.2 6.7 36 69-104 34-69 (178)
212 PRK05878 pyruvate phosphate di 79.7 66 0.0014 35.6 15.8 39 318-359 257-295 (530)
213 TIGR03586 PseI pseudaminic aci 79.7 24 0.00051 36.5 11.7 78 159-255 81-158 (327)
214 cd08239 THR_DH_like L-threonin 79.6 5.2 0.00011 41.0 7.1 97 71-174 164-263 (339)
215 PRK09424 pntA NAD(P) transhydr 79.5 6.9 0.00015 42.9 8.2 53 68-120 162-214 (509)
216 TIGR02356 adenyl_thiF thiazole 79.5 12 0.00026 35.7 9.0 30 71-100 21-51 (202)
217 PRK11908 NAD-dependent epimera 79.4 6.3 0.00014 40.6 7.7 31 71-101 1-33 (347)
218 PRK00141 murD UDP-N-acetylmura 79.3 9.1 0.0002 41.6 9.1 86 71-173 15-103 (473)
219 PRK06182 short chain dehydroge 79.2 7.3 0.00016 38.5 7.8 76 71-153 3-84 (273)
220 PF01408 GFO_IDH_MocA: Oxidore 79.2 7.4 0.00016 33.2 6.9 87 73-172 2-90 (120)
221 PRK00726 murG undecaprenyldiph 79.1 9.5 0.00021 39.4 8.9 99 72-172 2-118 (357)
222 COG0223 Fmt Methionyl-tRNA for 79.1 3.7 8E-05 41.8 5.5 38 71-108 1-38 (307)
223 TIGR01861 ANFD nitrogenase iro 79.0 8.1 0.00017 42.5 8.6 89 70-172 327-420 (513)
224 PF09370 TIM-br_sig_trns: TIM- 79.0 17 0.00036 36.2 9.8 164 73-257 16-208 (268)
225 PRK08219 short chain dehydroge 78.9 6.1 0.00013 37.6 6.9 73 70-150 2-78 (227)
226 TIGR01472 gmd GDP-mannose 4,6- 78.8 10 0.00022 39.1 8.9 70 72-148 1-83 (343)
227 PRK06464 phosphoenolpyruvate s 78.8 82 0.0018 36.7 17.0 44 315-362 288-332 (795)
228 PRK05865 hypothetical protein; 78.7 27 0.00059 40.9 13.0 111 72-200 1-121 (854)
229 PRK06057 short chain dehydroge 78.6 6.7 0.00014 38.3 7.3 36 69-104 5-41 (255)
230 PRK14573 bifunctional D-alanyl 78.3 19 0.00042 42.0 11.9 94 70-179 3-97 (809)
231 PRK14478 nitrogenase molybdenu 78.2 7.5 0.00016 42.4 8.1 88 71-172 324-415 (475)
232 PRK07577 short chain dehydroge 78.0 17 0.00036 34.7 9.8 70 71-152 3-77 (234)
233 PRK12742 oxidoreductase; Provi 78.0 9.4 0.0002 36.6 8.0 77 69-152 4-84 (237)
234 TIGR03022 WbaP_sugtrans Undeca 77.9 12 0.00027 40.3 9.7 87 71-169 125-216 (456)
235 PLN02653 GDP-mannose 4,6-dehyd 77.9 13 0.00028 38.1 9.5 72 71-149 6-89 (340)
236 PF00899 ThiF: ThiF family; I 77.8 7.8 0.00017 34.2 6.7 30 72-101 3-32 (135)
237 PRK05565 fabG 3-ketoacyl-(acyl 77.8 5.7 0.00012 38.3 6.4 31 70-100 4-35 (247)
238 TIGR01214 rmlD dTDP-4-dehydror 77.8 7.1 0.00015 38.8 7.3 57 73-151 1-58 (287)
239 PLN02240 UDP-glucose 4-epimera 77.7 12 0.00026 38.5 9.1 73 71-150 5-88 (352)
240 PF13477 Glyco_trans_4_2: Glyc 77.7 7.7 0.00017 33.9 6.7 78 74-151 2-82 (139)
241 COG0300 DltE Short-chain dehyd 77.6 5.9 0.00013 39.5 6.4 83 68-152 3-93 (265)
242 PRK07326 short chain dehydroge 77.5 7.2 0.00016 37.4 7.0 33 71-103 6-39 (237)
243 PRK06483 dihydromonapterin red 77.4 12 0.00025 36.0 8.5 35 70-104 1-36 (236)
244 cd00757 ThiF_MoeB_HesA_family 77.4 12 0.00026 36.4 8.5 121 71-202 21-142 (228)
245 PRK07688 thiamine/molybdopteri 77.3 6.6 0.00014 40.8 7.0 31 71-101 24-55 (339)
246 PRK01438 murD UDP-N-acetylmura 77.2 8.7 0.00019 41.8 8.3 92 71-178 16-111 (480)
247 PRK04690 murD UDP-N-acetylmura 77.1 13 0.00028 40.4 9.5 92 71-177 8-101 (468)
248 cd01080 NAD_bind_m-THF_DH_Cycl 76.9 5.4 0.00012 37.0 5.6 32 71-102 44-76 (168)
249 PRK13394 3-hydroxybutyrate deh 76.6 9.4 0.0002 37.2 7.7 36 69-104 5-41 (262)
250 TIGR01278 DPOR_BchB light-inde 76.6 13 0.00028 40.9 9.4 70 71-149 295-370 (511)
251 PRK07454 short chain dehydroge 76.5 11 0.00024 36.3 8.1 35 70-104 5-40 (241)
252 COG0821 gcpE 1-hydroxy-2-methy 76.5 8.6 0.00019 39.3 7.1 151 83-256 38-192 (361)
253 PRK05653 fabG 3-ketoacyl-(acyl 76.4 10 0.00022 36.3 7.8 35 70-104 4-39 (246)
254 PRK10675 UDP-galactose-4-epime 76.3 6.4 0.00014 40.2 6.6 71 72-149 1-79 (338)
255 PRK14106 murD UDP-N-acetylmura 76.3 5 0.00011 43.1 6.0 88 71-172 5-96 (450)
256 COG0287 TyrA Prephenate dehydr 76.3 21 0.00045 36.1 10.0 36 70-105 2-37 (279)
257 TIGR03451 mycoS_dep_FDH mycoth 76.2 8.8 0.00019 39.8 7.7 100 69-174 175-277 (358)
258 PRK07231 fabG 3-ketoacyl-(acyl 76.1 10 0.00022 36.6 7.7 78 71-153 5-91 (251)
259 TIGR02263 benz_CoA_red_C benzo 75.9 9.1 0.0002 40.4 7.7 103 70-172 232-355 (380)
260 PLN02778 3,5-epimerase/4-reduc 75.9 12 0.00025 38.0 8.3 30 70-99 8-38 (298)
261 cd01974 Nitrogenase_MoFe_beta 75.7 8.2 0.00018 41.5 7.4 87 71-172 303-399 (435)
262 PRK06180 short chain dehydroge 75.7 9.3 0.0002 38.0 7.4 34 71-104 4-38 (277)
263 cd01492 Aos1_SUMO Ubiquitin ac 75.6 14 0.0003 35.1 8.2 119 71-202 21-141 (197)
264 PRK09224 threonine dehydratase 75.6 22 0.00048 39.1 10.8 98 72-196 69-167 (504)
265 KOG1198 Zinc-binding oxidoredu 75.6 20 0.00044 37.3 10.0 75 68-152 155-234 (347)
266 PRK12829 short chain dehydroge 75.2 8.6 0.00019 37.5 7.0 76 70-152 10-95 (264)
267 PRK13304 L-aspartate dehydroge 75.1 14 0.0003 36.9 8.4 86 72-172 2-89 (265)
268 PRK06398 aldose dehydrogenase; 75.0 26 0.00056 34.3 10.4 33 71-103 6-39 (258)
269 TIGR02049 gshA_ferroox glutama 74.9 17 0.00037 37.7 8.9 51 224-274 260-313 (403)
270 PRK06382 threonine dehydratase 74.9 27 0.00058 37.2 11.0 98 72-196 74-172 (406)
271 TIGR03569 NeuB_NnaB N-acetylne 74.8 21 0.00045 36.9 9.8 141 81-255 16-157 (329)
272 PRK00421 murC UDP-N-acetylmura 74.8 16 0.00035 39.5 9.5 93 71-179 7-100 (461)
273 cd01076 NAD_bind_1_Glu_DH NAD( 74.8 22 0.00048 34.7 9.5 33 69-101 29-61 (227)
274 PLN02166 dTDP-glucose 4,6-dehy 74.7 32 0.0007 37.0 11.7 33 70-102 119-152 (436)
275 PLN02871 UDP-sulfoquinovose:DA 74.6 48 0.001 35.7 13.2 86 83-172 80-172 (465)
276 TIGR03013 EpsB_2 sugar transfe 74.6 20 0.00044 38.5 10.2 88 71-171 124-216 (442)
277 PRK08264 short chain dehydroge 74.5 23 0.00049 34.0 9.7 75 71-153 6-83 (238)
278 PRK12828 short chain dehydroge 74.5 13 0.00029 35.4 8.0 34 71-104 7-41 (239)
279 PRK08643 acetoin reductase; Va 74.3 9.9 0.00021 37.0 7.1 35 70-104 1-36 (256)
280 PLN02206 UDP-glucuronate decar 74.2 21 0.00045 38.5 10.1 32 70-101 118-150 (442)
281 cd01483 E1_enzyme_family Super 74.2 21 0.00045 31.7 8.6 29 73-101 1-29 (143)
282 PRK15181 Vi polysaccharide bio 74.1 17 0.00036 37.6 9.1 32 71-102 15-47 (348)
283 CHL00076 chlB photochlorophyll 74.0 18 0.00039 39.8 9.6 70 71-149 305-380 (513)
284 cd01968 Nitrogenase_NifE_I Nit 73.9 16 0.00035 38.9 9.1 88 71-172 287-378 (410)
285 PRK06194 hypothetical protein; 73.9 17 0.00036 36.1 8.8 34 70-103 5-39 (287)
286 TIGR00036 dapB dihydrodipicoli 73.9 31 0.00068 34.4 10.6 119 72-201 2-123 (266)
287 PRK08265 short chain dehydroge 73.7 14 0.00031 36.2 8.2 34 71-104 6-40 (261)
288 PRK13397 3-deoxy-7-phosphohept 73.7 35 0.00077 33.8 10.6 129 122-274 21-162 (250)
289 PF01488 Shikimate_DH: Shikima 73.7 6.6 0.00014 34.8 5.1 32 70-101 11-42 (135)
290 PRK02910 light-independent pro 73.4 23 0.00049 39.1 10.3 87 70-172 292-384 (519)
291 PRK07806 short chain dehydroge 73.4 15 0.00033 35.5 8.2 32 71-102 6-38 (248)
292 cd01981 Pchlide_reductase_B Pc 73.3 18 0.0004 38.7 9.4 86 71-172 301-392 (430)
293 PRK08198 threonine dehydratase 73.3 23 0.00051 37.6 10.1 98 71-195 70-168 (404)
294 cd01979 Pchlide_reductase_N Pc 73.1 7.4 0.00016 41.3 6.2 74 71-151 276-353 (396)
295 TIGR00460 fmt methionyl-tRNA f 73.1 14 0.00031 37.8 8.1 35 72-106 1-35 (313)
296 PRK12483 threonine dehydratase 73.1 23 0.00051 39.0 10.2 98 72-196 86-184 (521)
297 PRK12939 short chain dehydroge 73.0 16 0.00034 35.2 8.2 33 71-103 7-40 (250)
298 PRK08223 hypothetical protein; 72.9 22 0.00047 36.0 9.1 119 71-202 27-150 (287)
299 PLN00198 anthocyanidin reducta 72.9 18 0.0004 37.0 9.0 34 71-104 9-43 (338)
300 PRK08329 threonine synthase; V 72.6 31 0.00068 35.9 10.6 62 134-196 141-203 (347)
301 COG1063 Tdh Threonine dehydrog 72.6 11 0.00023 39.4 7.2 93 72-169 170-264 (350)
302 PRK12743 oxidoreductase; Provi 72.6 19 0.0004 35.2 8.6 33 70-102 1-34 (256)
303 PRK05476 S-adenosyl-L-homocyst 72.5 11 0.00023 40.4 7.2 35 70-104 211-245 (425)
304 PRK09135 pteridine reductase; 72.5 17 0.00037 35.0 8.2 32 71-102 6-38 (249)
305 cd01971 Nitrogenase_VnfN_like 72.4 28 0.00061 37.3 10.5 86 71-172 293-393 (427)
306 PF03446 NAD_binding_2: NAD bi 72.4 18 0.00038 33.1 7.8 31 71-101 1-31 (163)
307 PRK00005 fmt methionyl-tRNA fo 72.4 13 0.00029 37.9 7.7 35 72-106 1-35 (309)
308 PRK09620 hypothetical protein; 72.3 13 0.00028 36.3 7.2 24 80-103 29-52 (229)
309 PRK06138 short chain dehydroge 72.3 12 0.00027 36.1 7.3 34 71-104 5-39 (252)
310 cd00316 Oxidoreductase_nitroge 72.1 26 0.00057 36.8 10.2 86 71-172 279-370 (399)
311 PRK06953 short chain dehydroge 72.1 16 0.00036 34.7 7.9 34 71-104 1-35 (222)
312 PLN02686 cinnamoyl-CoA reducta 72.1 16 0.00035 38.1 8.5 37 66-102 48-85 (367)
313 PRK07236 hypothetical protein; 71.9 7.7 0.00017 40.8 6.0 34 69-102 4-37 (386)
314 PRK10084 dTDP-glucose 4,6 dehy 71.6 20 0.00044 36.8 9.0 72 72-150 1-80 (352)
315 KOG1502 Flavonol reductase/cin 71.5 10 0.00023 38.9 6.5 73 70-148 5-83 (327)
316 PLN00200 argininosuccinate syn 71.5 36 0.00078 36.2 10.8 34 70-103 4-39 (404)
317 PRK06179 short chain dehydroge 71.2 27 0.00058 34.3 9.4 74 71-153 4-83 (270)
318 COG2102 Predicted ATPases of P 71.2 1E+02 0.0023 29.8 14.5 141 72-230 2-144 (223)
319 PRK12824 acetoacetyl-CoA reduc 71.2 20 0.00043 34.4 8.3 34 70-103 1-35 (245)
320 TIGR01127 ilvA_1Cterm threonin 71.1 35 0.00075 35.9 10.7 98 72-196 49-147 (380)
321 PRK07074 short chain dehydroge 70.9 18 0.00038 35.3 8.0 34 70-103 1-35 (257)
322 TIGR01133 murG undecaprenyldip 70.9 44 0.00095 34.0 11.3 98 73-172 2-117 (348)
323 PRK12429 3-hydroxybutyrate deh 70.9 15 0.00032 35.7 7.4 35 71-105 4-39 (258)
324 PRK14476 nitrogenase molybdenu 70.7 21 0.00045 38.7 9.1 83 71-172 311-393 (455)
325 PRK01710 murD UDP-N-acetylmura 70.7 32 0.0007 37.2 10.6 89 71-173 14-106 (458)
326 COG2344 AT-rich DNA-binding pr 70.6 30 0.00064 32.7 8.6 88 71-172 84-174 (211)
327 COG0673 MviM Predicted dehydro 70.6 17 0.00037 37.2 8.1 146 70-229 2-154 (342)
328 PRK05928 hemD uroporphyrinogen 70.4 50 0.0011 31.8 11.1 30 71-100 1-30 (249)
329 PRK00683 murD UDP-N-acetylmura 70.3 22 0.00047 38.0 9.1 85 71-172 3-87 (418)
330 PRK07060 short chain dehydroge 70.2 14 0.0003 35.6 7.0 75 71-152 9-86 (245)
331 cd06448 L-Ser-dehyd Serine deh 70.2 38 0.00082 34.8 10.5 99 71-195 51-151 (316)
332 KOG0024 Sorbitol dehydrogenase 70.1 17 0.00038 37.2 7.6 83 66-153 165-252 (354)
333 cd08281 liver_ADH_like1 Zinc-d 70.1 13 0.00028 38.8 7.2 93 70-169 191-285 (371)
334 TIGR01284 alt_nitrog_alph nitr 70.1 15 0.00033 39.8 7.8 88 71-172 325-417 (457)
335 PRK07774 short chain dehydroge 70.0 22 0.00047 34.3 8.4 33 71-103 6-39 (250)
336 PRK00436 argC N-acetyl-gamma-g 69.8 17 0.00036 37.8 7.8 97 70-175 1-99 (343)
337 PRK00509 argininosuccinate syn 69.6 36 0.00077 36.2 10.2 66 132-201 98-168 (399)
338 PRK06500 short chain dehydroge 69.6 11 0.00023 36.4 6.1 34 70-103 5-39 (249)
339 PRK07023 short chain dehydroge 69.6 22 0.00047 34.3 8.3 33 72-104 2-35 (243)
340 COG1091 RfbD dTDP-4-dehydrorha 69.6 20 0.00042 36.2 7.9 82 73-177 2-101 (281)
341 COG3494 Uncharacterized protei 69.5 15 0.00033 36.1 6.8 68 73-149 7-74 (279)
342 PRK03369 murD UDP-N-acetylmura 69.5 19 0.00041 39.4 8.5 86 71-173 12-99 (488)
343 COG0451 WcaG Nucleoside-diphos 69.4 18 0.00038 36.2 7.9 34 73-106 2-36 (314)
344 PLN02214 cinnamoyl-CoA reducta 69.4 23 0.00051 36.5 8.9 36 70-105 9-45 (342)
345 PRK08690 enoyl-(acyl carrier p 69.3 9.6 0.00021 37.6 5.7 35 68-102 3-40 (261)
346 cd08285 NADP_ADH NADP(H)-depen 69.2 16 0.00034 37.6 7.6 95 69-169 165-261 (351)
347 PRK06841 short chain dehydroge 69.0 16 0.00035 35.4 7.3 34 71-104 15-49 (255)
348 PRK08306 dipicolinate synthase 68.9 7.1 0.00015 39.7 4.8 33 71-103 152-184 (296)
349 PRK08526 threonine dehydratase 68.8 46 0.001 35.4 11.1 97 72-195 69-166 (403)
350 PRK06815 hypothetical protein; 68.8 41 0.00089 34.4 10.4 97 72-195 69-166 (317)
351 PRK07666 fabG 3-ketoacyl-(acyl 68.8 19 0.00042 34.5 7.7 34 71-104 7-41 (239)
352 PRK05690 molybdopterin biosynt 68.7 42 0.0009 33.1 10.0 31 71-101 32-62 (245)
353 PRK08638 threonine dehydratase 68.7 38 0.00083 35.0 10.2 97 72-195 76-173 (333)
354 PRK07523 gluconate 5-dehydroge 68.7 9.4 0.0002 37.2 5.5 33 71-103 10-43 (255)
355 PRK10637 cysG siroheme synthas 68.6 16 0.00034 39.7 7.6 32 71-102 12-43 (457)
356 TIGR03366 HpnZ_proposed putati 68.6 12 0.00026 37.3 6.3 32 70-101 120-152 (280)
357 PRK13398 3-deoxy-7-phosphohept 68.5 1E+02 0.0023 30.8 12.9 214 73-334 28-265 (266)
358 TIGR02991 ectoine_eutB ectoine 68.4 50 0.0011 33.9 10.9 98 72-195 68-165 (317)
359 PLN02696 1-deoxy-D-xylulose-5- 68.2 80 0.0017 34.1 12.5 134 71-213 57-211 (454)
360 PF01262 AlaDh_PNT_C: Alanine 68.2 9.4 0.0002 35.2 5.1 33 72-104 21-53 (168)
361 PRK06482 short chain dehydroge 68.1 20 0.00043 35.4 7.8 33 71-103 2-35 (276)
362 TIGR01862 N2-ase-Ialpha nitrog 68.1 22 0.00048 38.3 8.6 88 71-172 317-409 (443)
363 PRK05600 thiamine biosynthesis 68.0 23 0.0005 37.3 8.5 117 71-202 41-162 (370)
364 PRK08762 molybdopterin biosynt 68.0 37 0.0008 35.7 10.1 32 70-101 134-165 (376)
365 PRK02705 murD UDP-N-acetylmura 68.0 35 0.00077 36.7 10.3 92 73-173 2-97 (459)
366 COG1810 Uncharacterized protei 67.9 42 0.0009 32.4 9.2 26 71-96 1-26 (224)
367 PRK12827 short chain dehydroge 67.9 44 0.00096 32.0 10.1 33 70-102 5-38 (249)
368 TIGR01860 VNFD nitrogenase van 67.8 23 0.00049 38.5 8.6 89 70-172 326-419 (461)
369 PRK06128 oxidoreductase; Provi 67.8 21 0.00046 35.9 8.0 35 69-103 53-88 (300)
370 PRK07102 short chain dehydroge 67.8 18 0.00039 34.9 7.2 34 71-104 1-35 (243)
371 PRK14477 bifunctional nitrogen 67.7 19 0.00041 42.6 8.5 88 71-172 320-411 (917)
372 TIGR03570 NeuD_NnaD sugar O-ac 67.6 26 0.00057 32.5 8.2 29 73-101 1-29 (201)
373 TIGR02853 spore_dpaA dipicolin 67.6 10 0.00022 38.4 5.6 32 71-102 151-182 (287)
374 PRK12745 3-ketoacyl-(acyl-carr 67.6 31 0.00067 33.4 9.0 34 70-103 1-35 (256)
375 PF02571 CbiJ: Precorrin-6x re 67.6 71 0.0015 31.6 11.3 152 82-251 81-248 (249)
376 TIGR01124 ilvA_2Cterm threonin 67.5 45 0.00098 36.6 10.9 98 72-196 66-164 (499)
377 PRK06940 short chain dehydroge 67.4 28 0.00061 34.6 8.7 33 70-103 1-33 (275)
378 COG4091 Predicted homoserine d 67.4 9.8 0.00021 39.3 5.2 149 71-226 17-182 (438)
379 TIGR01418 PEP_synth phosphoeno 67.4 1.9E+02 0.0042 33.7 16.5 42 315-358 286-328 (782)
380 PRK08263 short chain dehydroge 67.4 12 0.00027 37.0 6.1 34 70-103 2-36 (275)
381 PRK08703 short chain dehydroge 67.3 12 0.00026 36.1 5.9 34 71-104 6-40 (239)
382 cd01485 E1-1_like Ubiquitin ac 67.3 68 0.0015 30.4 10.9 31 71-101 19-49 (198)
383 PRK09140 2-dehydro-3-deoxy-6-p 67.3 72 0.0016 30.6 11.1 130 79-225 20-155 (206)
384 PRK06947 glucose-1-dehydrogena 67.3 24 0.00053 34.0 8.1 32 70-101 1-33 (248)
385 PRK07856 short chain dehydroge 67.2 38 0.00083 32.8 9.5 34 71-104 6-40 (252)
386 PRK05447 1-deoxy-D-xylulose 5- 67.1 47 0.001 35.1 10.4 168 71-248 1-188 (385)
387 PRK07024 short chain dehydroge 67.1 22 0.00047 34.7 7.8 35 70-104 1-36 (257)
388 PRK07067 sorbitol dehydrogenas 67.1 14 0.0003 36.0 6.4 34 71-104 6-40 (257)
389 PRK07453 protochlorophyllide o 67.0 19 0.0004 36.7 7.5 34 70-103 5-39 (322)
390 PRK15116 sulfur acceptor prote 66.8 30 0.00064 34.7 8.6 30 71-100 30-59 (268)
391 PRK05868 hypothetical protein; 66.8 9.2 0.0002 40.1 5.3 33 71-103 1-33 (372)
392 PRK04308 murD UDP-N-acetylmura 66.8 45 0.00097 35.8 10.7 93 71-179 5-101 (445)
393 PF00670 AdoHcyase_NAD: S-aden 66.7 8 0.00017 35.6 4.1 32 71-102 23-54 (162)
394 PRK07814 short chain dehydroge 66.7 17 0.00038 35.6 7.0 34 71-104 10-44 (263)
395 KOG0029 Amine oxidase [Seconda 66.6 16 0.00035 40.1 7.2 34 69-102 13-46 (501)
396 PRK08328 hypothetical protein; 66.4 29 0.00062 33.9 8.3 122 71-202 27-149 (231)
397 TIGR01179 galE UDP-glucose-4-e 66.3 26 0.00057 35.1 8.4 73 73-152 1-79 (328)
398 PRK07063 short chain dehydroge 66.3 20 0.00044 35.0 7.4 34 71-104 7-41 (260)
399 PRK06198 short chain dehydroge 66.3 23 0.00051 34.4 7.8 34 70-103 5-40 (260)
400 TIGR01279 DPOR_bchN light-inde 66.3 24 0.00053 37.6 8.4 74 71-151 274-351 (407)
401 PRK10262 thioredoxin reductase 66.2 17 0.00037 37.0 7.1 35 67-101 2-36 (321)
402 PRK06349 homoserine dehydrogen 66.2 55 0.0012 35.1 11.1 113 72-199 4-126 (426)
403 PRK07478 short chain dehydroge 66.1 20 0.00044 34.8 7.3 34 71-104 6-40 (254)
404 PRK08226 short chain dehydroge 66.1 12 0.00026 36.6 5.7 34 70-103 5-39 (263)
405 cd01966 Nitrogenase_NifN_1 Nit 66.0 27 0.00058 37.4 8.7 83 71-172 300-382 (417)
406 COG0063 Predicted sugar kinase 66.0 99 0.0021 31.3 12.2 143 71-227 32-196 (284)
407 PRK06487 glycerate dehydrogena 65.9 23 0.00051 36.3 7.9 33 69-101 146-178 (317)
408 PLN02970 serine racemase 65.9 50 0.0011 34.0 10.4 97 72-195 76-173 (328)
409 TIGR01282 nifD nitrogenase mol 65.8 12 0.00026 40.7 6.0 87 71-171 335-425 (466)
410 PF08886 GshA: Glutamate-cyste 65.6 8.4 0.00018 40.1 4.4 51 224-274 263-316 (404)
411 PRK05335 tRNA (uracil-5-)-meth 65.6 11 0.00024 40.3 5.6 36 70-105 1-36 (436)
412 PLN02986 cinnamyl-alcohol dehy 65.6 24 0.00053 35.8 8.0 33 71-103 5-38 (322)
413 PRK02472 murD UDP-N-acetylmura 65.5 44 0.00096 35.8 10.4 94 71-178 5-101 (447)
414 PRK07890 short chain dehydroge 65.5 15 0.00033 35.6 6.3 34 71-104 5-39 (258)
415 cd08269 Zn_ADH9 Alcohol dehydr 65.5 14 0.00031 36.9 6.2 77 71-153 130-208 (312)
416 PRK15469 ghrA bifunctional gly 65.5 23 0.00049 36.4 7.7 32 71-102 136-167 (312)
417 PRK06200 2,3-dihydroxy-2,3-dih 65.4 24 0.00053 34.5 7.8 34 71-104 6-40 (263)
418 PRK06172 short chain dehydroge 65.3 25 0.00054 34.1 7.8 34 71-104 7-41 (253)
419 PRK05597 molybdopterin biosynt 65.2 31 0.00068 36.0 8.8 31 71-101 28-58 (355)
420 PRK12384 sorbitol-6-phosphate 65.2 26 0.00055 34.2 7.8 34 70-103 1-35 (259)
421 PRK08813 threonine dehydratase 65.1 41 0.00089 35.1 9.5 95 73-194 83-178 (349)
422 PRK05875 short chain dehydroge 65.0 22 0.00047 35.1 7.4 33 71-103 7-40 (276)
423 PRK10507 bifunctional glutathi 65.0 95 0.0021 35.0 12.8 123 158-297 473-599 (619)
424 PRK06079 enoyl-(acyl carrier p 64.9 14 0.0003 36.2 5.9 33 71-103 7-42 (252)
425 COG2308 Uncharacterized conser 64.8 24 0.00051 37.6 7.5 87 193-283 340-435 (488)
426 PRK08300 acetaldehyde dehydrog 64.8 27 0.00058 35.7 7.9 99 72-178 5-104 (302)
427 PRK08217 fabG 3-ketoacyl-(acyl 64.7 15 0.00033 35.3 6.1 34 71-104 5-39 (253)
428 PRK06436 glycerate dehydrogena 64.7 35 0.00075 34.9 8.8 32 70-101 121-152 (303)
429 COG0075 Serine-pyruvate aminot 64.6 51 0.0011 34.8 10.1 33 71-103 80-112 (383)
430 PLN02896 cinnamyl-alcohol dehy 64.4 26 0.00057 36.1 8.1 33 71-103 10-43 (353)
431 PRK14031 glutamate dehydrogena 64.4 57 0.0012 35.2 10.6 32 70-101 227-258 (444)
432 PRK06935 2-deoxy-D-gluconate 3 64.3 32 0.0007 33.5 8.4 33 71-103 15-48 (258)
433 PRK07878 molybdopterin biosynt 64.3 64 0.0014 34.2 11.1 31 71-101 42-72 (392)
434 PRK07502 cyclohexadienyl dehyd 64.2 8.8 0.00019 39.1 4.4 35 66-100 1-37 (307)
435 PRK13301 putative L-aspartate 64.2 36 0.00078 34.0 8.4 127 70-215 1-132 (267)
436 PLN02586 probable cinnamyl alc 64.1 31 0.00068 35.8 8.7 72 70-152 183-256 (360)
437 cd08261 Zn_ADH7 Alcohol dehydr 64.0 17 0.00037 37.0 6.6 76 71-152 160-236 (337)
438 PRK11150 rfaD ADP-L-glycero-D- 63.9 34 0.00075 34.3 8.7 29 74-102 2-31 (308)
439 TIGR01286 nifK nitrogenase mol 63.9 25 0.00055 38.7 8.1 32 71-102 363-394 (515)
440 TIGR00715 precor6x_red precorr 63.7 1.6E+02 0.0035 29.2 14.1 152 82-252 80-253 (256)
441 PRK06753 hypothetical protein; 63.6 11 0.00025 39.1 5.2 33 72-104 1-33 (373)
442 COG1181 DdlA D-alanine-D-alani 63.5 0.58 1.2E-05 48.1 -4.4 108 178-291 45-156 (317)
443 cd05284 arabinose_DH_like D-ar 63.5 21 0.00046 36.3 7.2 76 71-153 168-245 (340)
444 PRK08246 threonine dehydratase 63.4 71 0.0015 32.6 10.9 98 71-195 68-166 (310)
445 PRK08220 2,3-dihydroxybenzoate 63.4 48 0.001 32.0 9.4 34 71-104 8-42 (252)
446 PRK06171 sorbitol-6-phosphate 63.3 47 0.001 32.4 9.4 35 71-105 9-44 (266)
447 PRK07984 enoyl-(acyl carrier p 62.9 31 0.00067 34.1 8.0 34 70-103 5-41 (262)
448 PRK09134 short chain dehydroge 62.9 43 0.00093 32.6 9.0 34 69-102 7-41 (258)
449 PRK08639 threonine dehydratase 62.8 74 0.0016 34.0 11.3 97 72-195 74-174 (420)
450 PRK15204 undecaprenyl-phosphat 62.6 50 0.0011 36.0 10.1 85 71-169 146-235 (476)
451 PRK06847 hypothetical protein; 62.6 14 0.0003 38.4 5.6 32 71-102 4-35 (375)
452 PRK05884 short chain dehydroge 62.6 19 0.00041 34.5 6.2 31 73-103 2-33 (223)
453 TIGR00290 MJ0570_dom MJ0570-re 62.6 1.3E+02 0.0029 29.2 12.0 138 75-232 6-145 (223)
454 PLN02662 cinnamyl-alcohol dehy 62.5 23 0.0005 35.8 7.2 33 72-104 5-38 (322)
455 PRK08309 short chain dehydroge 62.5 45 0.00098 31.1 8.5 32 72-103 1-32 (177)
456 PRK06113 7-alpha-hydroxysteroi 62.4 29 0.00062 33.8 7.6 33 71-103 11-44 (255)
457 PRK06523 short chain dehydroge 62.4 37 0.00081 33.0 8.4 34 71-104 9-43 (260)
458 COG1086 Predicted nucleoside-d 62.2 50 0.0011 36.5 9.7 99 69-179 114-216 (588)
459 PRK13398 3-deoxy-7-phosphohept 62.2 88 0.0019 31.3 11.0 112 123-255 34-159 (266)
460 PRK06270 homoserine dehydrogen 62.2 67 0.0014 33.3 10.5 31 71-101 2-42 (341)
461 PRK08589 short chain dehydroge 62.0 30 0.00065 34.2 7.7 34 70-103 5-39 (272)
462 cd00755 YgdL_like Family of ac 62.0 27 0.00059 34.1 7.2 31 71-101 11-41 (231)
463 PLN02650 dihydroflavonol-4-red 62.0 29 0.00063 35.7 7.9 33 71-103 5-38 (351)
464 cd03785 GT1_MurG MurG is an N- 61.9 57 0.0012 33.2 10.0 98 73-172 1-116 (350)
465 TIGR02079 THD1 threonine dehyd 61.9 76 0.0017 33.8 11.1 98 72-196 65-166 (409)
466 PRK06932 glycerate dehydrogena 61.8 30 0.00066 35.4 7.8 32 69-100 145-176 (314)
467 PRK06181 short chain dehydroge 61.7 24 0.00051 34.5 6.9 32 72-103 2-34 (263)
468 PLN02928 oxidoreductase family 61.7 31 0.00068 35.9 8.0 33 69-101 157-189 (347)
469 TIGR02130 dapB_plant dihydrodi 61.5 1.1E+02 0.0025 30.7 11.5 28 73-100 2-30 (275)
470 cd00640 Trp-synth-beta_II Tryp 61.4 90 0.002 30.3 10.9 98 72-196 51-150 (244)
471 PLN02740 Alcohol dehydrogenase 61.1 41 0.00089 35.2 8.9 80 69-153 197-278 (381)
472 PRK07048 serine/threonine dehy 61.1 66 0.0014 32.9 10.3 98 72-196 73-171 (321)
473 PRK05876 short chain dehydroge 61.0 31 0.00068 34.2 7.7 35 69-103 4-39 (275)
474 PRK11840 bifunctional sulfur c 61.0 1.6E+02 0.0034 30.4 12.5 149 82-262 151-306 (326)
475 PRK05717 oxidoreductase; Valid 61.0 33 0.00072 33.3 7.8 33 71-103 10-43 (255)
476 PRK02006 murD UDP-N-acetylmura 61.0 56 0.0012 35.7 10.2 93 71-179 7-107 (498)
477 cd08296 CAD_like Cinnamyl alco 60.9 26 0.00056 35.7 7.2 35 71-105 164-198 (333)
478 TIGR01182 eda Entner-Doudoroff 60.9 1.6E+02 0.0034 28.2 12.1 106 78-223 17-123 (204)
479 COG1171 IlvA Threonine dehydra 60.9 44 0.00096 34.7 8.7 77 72-174 75-151 (347)
480 PRK09880 L-idonate 5-dehydroge 60.7 21 0.00046 36.7 6.6 95 71-174 170-267 (343)
481 cd01562 Thr-dehyd Threonine de 60.6 63 0.0014 32.6 10.0 30 72-101 66-95 (304)
482 PLN02550 threonine dehydratase 60.5 61 0.0013 36.3 10.3 98 72-196 158-256 (591)
483 PRK06196 oxidoreductase; Provi 60.4 15 0.00032 37.4 5.3 33 71-103 26-59 (315)
484 PRK10309 galactitol-1-phosphat 60.3 29 0.00063 35.6 7.5 97 70-173 160-260 (347)
485 CHL00073 chlN photochlorophyll 60.3 35 0.00077 36.9 8.2 74 71-151 314-399 (457)
486 PLN02253 xanthoxin dehydrogena 60.2 33 0.00071 33.9 7.7 33 71-103 18-51 (280)
487 PRK12409 D-amino acid dehydrog 60.2 14 0.00031 39.0 5.3 33 71-103 1-33 (410)
488 cd01967 Nitrogenase_MoFe_alpha 60.1 37 0.0008 36.0 8.4 87 71-172 286-377 (406)
489 PRK05557 fabG 3-ketoacyl-(acyl 60.1 52 0.0011 31.4 8.9 33 72-104 6-39 (248)
490 cd08231 MDR_TM0436_like Hypoth 60.1 19 0.0004 37.3 6.0 96 70-169 177-275 (361)
491 KOG1399 Flavin-containing mono 60.1 14 0.00031 39.9 5.2 42 69-110 4-45 (448)
492 PRK08401 L-aspartate oxidase; 60.1 34 0.00074 37.1 8.3 33 71-103 1-33 (466)
493 PRK08773 2-octaprenyl-3-methyl 60.1 13 0.00028 39.0 5.0 34 69-102 4-37 (392)
494 PRK07035 short chain dehydroge 60.0 31 0.00067 33.4 7.3 33 71-103 8-41 (252)
495 PRK08125 bifunctional UDP-gluc 60.0 30 0.00066 39.3 8.2 73 69-148 313-387 (660)
496 PRK09126 hypothetical protein; 60.0 14 0.0003 38.8 5.1 35 70-104 2-36 (392)
497 cd00401 AdoHcyase S-adenosyl-L 60.0 15 0.00033 39.2 5.3 35 70-104 201-235 (413)
498 PRK06914 short chain dehydroge 59.9 32 0.0007 33.9 7.6 34 71-104 3-37 (280)
499 PRK06463 fabG 3-ketoacyl-(acyl 59.9 37 0.0008 33.0 7.9 33 71-103 7-40 (255)
500 cd05212 NAD_bind_m-THF_DH_Cycl 59.9 19 0.00041 32.3 5.2 50 71-120 28-78 (140)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=5e-125 Score=965.34 Aligned_cols=453 Identities=54% Similarity=0.913 Sum_probs=447.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
||+||||+||||||+||||+||++|+.+|+|||++|.+++|+.+||++++|||.+..+||+++++|+++|++.|+++|||
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||||||+.|+++|++.|+.||||++++|+.|+||..+|+++.++|+|++|+|...+.+.+++.++++++||||+||++
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.||||+||+++++.+|+.++++.+++++..+||++.+|||+|+..+||+|+||++|++||++++++||||+||||||++|
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
++|+|.|+++.|++|.+.|+++++++||.|++||||+++.++.|||||||+|+|++||+||++||+||++||||+|.|++
T Consensus 241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Gek 320 (645)
T COG4770 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEK 320 (645)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
|++.|.+++.+|||||+|||||||..+|+|++|+|+.|.+|.++++|+|+++..|+.|+++|||||+|+|+||.||++|+
T Consensus 321 L~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl 400 (645)
T COG4770 321 LPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEAL 400 (645)
T ss_pred CCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccCCcc
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQK 522 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 522 (537)
++|.+||+++.|.|+.||++||+.++.||+|+.|+.+|.||.++++++.++.+
T Consensus 401 ~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~~~~ 453 (645)
T COG4770 401 DRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAPAP 453 (645)
T ss_pred HHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcceeeeecccccccCCC
Confidence 99999999999999999999999999999999999999999999988764433
No 2
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1e-120 Score=918.19 Aligned_cols=451 Identities=57% Similarity=0.953 Sum_probs=443.5
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009316 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 74 iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~ 153 (537)
|||+||||||+|++|+||+||+++|+|||++|.++.|+++||+++|+++++...||++.+.|++++++.++.+|||||||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCC
Q 009316 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGG 233 (537)
Q Consensus 154 lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~g 233 (537)
||||.+|+++|+++|+.|+||++.+++.++||..+|++++++|||++|+|+....|.+++.+.++++|||||||+..|||
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEEcCC
Q 009316 234 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS 313 (537)
Q Consensus 234 g~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~~P~ 313 (537)
|+||+++++++|+.+.++.+++++..+||++.+|+|+||+.+||++||+++|++|+++++++||||+||||||++|++|+
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa 240 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCCCCCC
Q 009316 314 PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 393 (537)
Q Consensus 314 ~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~l~~~ 393 (537)
|.++++.|.+|.+.|+++++++||.|++||||++|+.++|||+|||+|+|++||+||++||+||++||||+|.|++|+++
T Consensus 241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~~ 320 (670)
T KOG0238|consen 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPLK 320 (670)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCC-CCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHHHHH
Q 009316 394 QEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAG-GPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERM 472 (537)
Q Consensus 394 ~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~-~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~ 472 (537)
|++++.+||++|||||||||.++|+|++|.+..+.+|. .|++|+|+++++|+.|+++|||||+|+|+||.||++|+.||
T Consensus 321 q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl 400 (670)
T KOG0238|consen 321 QEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKL 400 (670)
T ss_pred cceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHH
Confidence 99999999999999999999999999999999997774 79999999999999999999999999999999999999999
Q ss_pred HHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccCCccee
Q 009316 473 KRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIV 524 (537)
Q Consensus 473 ~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~ 524 (537)
.++|+++.|.|++|||+||+.|+.|++|..|+++|.||++|..++.++..+.
T Consensus 401 ~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~ 452 (670)
T KOG0238|consen 401 KDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESIT 452 (670)
T ss_pred HHHHhhcEEecCccchHHHHHHhcChhhhcCccccccchhcCccccCccccC
Confidence 9999999999999999999999999999999999999999999987775443
No 3
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=5.4e-107 Score=852.06 Aligned_cols=450 Identities=51% Similarity=0.856 Sum_probs=437.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~-~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
++++||||+||||||.|+.|+|.++|+++|+||+..|..+.|...|||.|.+|.. .+.++|+++|.|+++|++.++|+|
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaI 84 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAI 84 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCee
Confidence 4589999999999999999999999999999999999999999999999999854 456899999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvK 227 (537)
||||||||||++|++.|.+.||.|+||+++.+..++||..+|..+.++|||+.|++...+.+.+++.++++++|||+|||
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiK 164 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIK 164 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeecccccee
Q 009316 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~ 307 (537)
++.||||+||++|.++++|.++++++.++++++||++.+|+|+||++++|++||+++|.+|+++|+++||||+||||||+
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKV 244 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKV 244 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcC
Q 009316 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (537)
Q Consensus 308 ~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G 387 (537)
+|.+|++.|++++|++|++.|+++++.+||.|++|+||++|.+|++||||||||+|++|++||++||+|+++.||+++.|
T Consensus 245 VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 245 VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEe-eeccCCCccCCCCCCccEEEEE
Q 009316 388 GKLR------YKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMD-SHVYPDYVVPPSYDSLLGKLIV 460 (537)
Q Consensus 388 ~~l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d-~~~~~G~~v~~~~ds~ig~vi~ 460 (537)
..|. ..|++|..+|+||+|||+.|||.++|.|..|+|+.|+.++|.|||+| -.-+.|..|+|+||||+-|+.+
T Consensus 325 ~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~ 404 (1149)
T COG1038 325 ATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTC 404 (1149)
T ss_pred CccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEee
Confidence 9986 24566999999999999999999999999999999999999999999 5678999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhcc
Q 009316 461 WAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 518 (537)
Q Consensus 461 ~g~~~~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 518 (537)
||.+.++|++||.|+|.+|+|+||+|||+||..++.||.|++|+|+|+||++..+.+.
T Consensus 405 ~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~tPeLf~ 462 (1149)
T COG1038 405 WGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTTPELFQ 462 (1149)
T ss_pred cCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccCcceeeeccCCHHHhc
Confidence 9999999999999999999999999999999999999999999999999999877764
No 4
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=5.5e-102 Score=809.25 Aligned_cols=446 Identities=59% Similarity=0.990 Sum_probs=438.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|++||||+|||+++.+++|+|+++|+++|+||+++|..+.|..++|++++++|.+..++|+|+++++++++..++|+|||
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence 68999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||+|||+.|+++|++.|+.|+||++++++.++||..+|++|+++|||++|++...+.+.+++.++++++||||||||+
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999766678889999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+||++|++.++|.++++.+++++...|+++.+++||||++++|+++|+++|++|+++++++|+|++|+++||+++
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
++|++.++++.++++.+.+.++++.+||.|++|+||+++.+|+|||||||||+||+|++||++||+||+++||++++|++
T Consensus 241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~ 320 (449)
T COG0439 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEP 320 (449)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999977789999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++++++++..+||+++||||+|||..+|.|+||.++.+.+|+++|||+|++.+.|.+|+++||||+||+|++|.+|++|+
T Consensus 321 l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai 400 (449)
T COG0439 321 LSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAI 400 (449)
T ss_pred CCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchh
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 515 (537)
.+|+++|.+++|+|++||++|++.++++++|.+|+++|+||++++.
T Consensus 401 ~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 401 ARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred HHHHHHHHheEecCccCChHHHHHHhcChHhhcCCcchhhhhhccc
Confidence 9999999999999999999999999999999999999999998764
No 5
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.1e-96 Score=794.01 Aligned_cols=443 Identities=55% Similarity=0.948 Sum_probs=429.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|||||||+|||++|++++++|+++|+++|++++++|.+++++++||+.+++++.+..++|+|.+.|+++|++.++|+|||
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||++|++.+++.+++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~ 160 (499)
T PRK08654 81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160 (499)
T ss_pred CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998643478999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+||++|++.+||.++++.+..++...|+++.+|+|+||++++|++|++++|++|+++++++|+|++|++||++++
T Consensus 161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie 240 (499)
T PRK08654 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 (499)
T ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence 99999999999999999999999988888889989999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
++|++.++++++++|.+.+.++++++||.|+++|||++++ |++||+|||||+|++|+++|+++|+|++++|+++++|.+
T Consensus 241 ~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~-g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~ 319 (499)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSN-GNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEE 319 (499)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEC-CcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCCC
Confidence 9999889999999999999999999999999999999974 679999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
|++.+.++.++||+|+||||||||.++|.|++|+|+.+..|+++|||+|++++.|+.|+++||||+||||+||+||++|+
T Consensus 320 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~ 399 (499)
T PRK08654 320 LSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAI 399 (499)
T ss_pred CCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHH
Confidence 99888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccc
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKH 513 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 513 (537)
++|.+||++++|+|++||++||++||.||+|++|+++|+||+++
T Consensus 400 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~ 443 (499)
T PRK08654 400 ARMRRALYEYVIVGVKTNIPFHKAVMENENFVRGNLHTHFIEEE 443 (499)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 99999999999999999999999999999999999999999998
No 6
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=7.1e-97 Score=761.60 Aligned_cols=447 Identities=46% Similarity=0.770 Sum_probs=434.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~-~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
.+||||+|||||+.|+.|+|.++|+++|++|+..|..+.|...||++|.+|.. ++...|+.+++|+++|+++++|+|||
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 37999999999999999999999999999999999999999999999999854 55689999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||+||+.+|+++|.++|+.|+||+++.+..++||..+|.++.++|||++|++...+++.+++.+|+++.|+|+|+|++
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+||++|++.++++++|+++.+++.++||++.++||+||+.++|++||.++|.+|+++|+.+||||+||||||++|
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
++|++.|+++++++|...+.++++.+||..++++||++|..|++||||||+|+|++|++||.+||+||+..||++|.|..
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeee-ccCCCccCCCCCCccEEEEEEcCCH
Q 009316 390 LR---YKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSH-VYPDYVVPPSYDSLLGKLIVWAPTR 465 (537)
Q Consensus 390 l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~-~~~G~~v~~~~ds~ig~vi~~g~~~ 465 (537)
|+ +.|+.|..+|.+|+||++.|||.++|.|..|+|+.++.-.+.|+|+|.. .+.|..|+|+||||+-|+|++|.|.
T Consensus 353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~ 432 (1176)
T KOG0369|consen 353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY 432 (1176)
T ss_pred cccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCcc
Confidence 74 6788999999999999999999999999999999999989999999854 5789999999999999999999999
Q ss_pred HHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhc
Q 009316 466 EKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (537)
Q Consensus 466 ~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~ 517 (537)
+-+.+||.|+|.+|+|+|++|||+||..+|.|+.|.+|.++|.||+++.+.+
T Consensus 433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~PeLF 484 (1176)
T KOG0369|consen 433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDETPELF 484 (1176)
T ss_pred HHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeeeeeeeEEecCChHHh
Confidence 9999999999999999999999999999999999999999999999987654
No 7
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=4.8e-91 Score=749.67 Aligned_cols=446 Identities=54% Similarity=0.891 Sum_probs=428.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|||+++++++++|+++|++++++++++|..++++++||+.+++++.+. ++|+|.++|+++|+++++|+|||
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~p 79 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHP 79 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEe
Confidence 58999999999999999999999999999999999999999999999999986554 89999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||++|+..+++.++++|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 80 g~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~ 159 (472)
T PRK07178 80 GYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKAT 159 (472)
T ss_pred CCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998544578899999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+||++|++.+||.++++.+..++...|++.++++|+||++++|+++++++|++|+++++++++|++++++++.++
T Consensus 160 ~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e 239 (472)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239 (472)
T ss_pred CCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEE
Confidence 99999999999999999999999888887788888999999999989999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
++|++.++++.+++|.+.+.++++++||.|++++||+++++|++||+|||||+|++|+++++++|+|++++++++++|++
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~ 319 (472)
T PRK07178 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLP 319 (472)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCCC
Confidence 99998899999999999999999999999999999999877889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++..+.++..+||+|++||++|||.++|.|++|+|+.+..|+++|||+|+++++|+.|+++|||++||||+||+|+++|+
T Consensus 320 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~ 399 (472)
T PRK07178 320 LSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEAL 399 (472)
T ss_pred CCCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHH
Confidence 98888788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhc
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~ 517 (537)
++|.++|++++|+|++||++||+.||.||+|++|+++|+||+++ .++
T Consensus 400 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~ 446 (472)
T PRK07178 400 DRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNTSFVESH-PEL 446 (472)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhh
Confidence 99999999999999999999999999999999999999999998 444
No 8
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=7.8e-91 Score=748.67 Aligned_cols=449 Identities=51% Similarity=0.859 Sum_probs=428.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|||+++++++++|+++|+++|++++++|..++++++||+.+++++.+ ..+|+|.+.|+++|++.++|+|||
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHHHHHhCCCEEEE
Confidence 6899999999999999999999999999999999999999999999999998654 488999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcC-CCCHHHHHHHHHhcCCcEEEee
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~-v~~~~~~~~~~~~ig~PvvvKp 228 (537)
+|||++|+..+++.+++.|++|+||++++++.++||..+|++|+++|||+||++... ..+.+++.++++++|||+||||
T Consensus 80 g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP 159 (478)
T PRK08463 80 GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999975322 3578899999999999999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeE
Q 009316 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~ 308 (537)
..|+||+||+++++.+||.++++.+..++...|+++.+++|+||++++|+++++++|++|+++++++|+|+.++++++.+
T Consensus 160 ~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~i 239 (478)
T PRK08463 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceE
Confidence 99999999999999999999999988777778888999999999988999999999999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCC
Q 009316 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 388 (537)
Q Consensus 309 e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~ 388 (537)
+.+|++.++++++++|.+.+.++++++||.|++|+||+++++|++||+|||||+|++|+++|+++|+|++++++++++|+
T Consensus 240 e~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G~ 319 (478)
T PRK08463 240 EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGE 319 (478)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcCC
Confidence 99999889999999999999999999999999999999998788999999999999999999999999999999999999
Q ss_pred CCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHH
Q 009316 389 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 468 (537)
Q Consensus 389 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea 468 (537)
++++.+.++.++||++++||+||||.+.|.|++|+|+.+.+|.++++|+|+++..|+.|+++|||++||||++|+|+++|
T Consensus 320 ~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a 399 (478)
T PRK08463 320 ILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLA 399 (478)
T ss_pred CCCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHH
Confidence 99887777788999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccC
Q 009316 469 IERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQA 519 (537)
Q Consensus 469 ~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 519 (537)
++++.++|+++.|+|++||++||+.||.|++|++|+++|+||+++++++..
T Consensus 400 ~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 450 (478)
T PRK08463 400 VNKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLE 450 (478)
T ss_pred HHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhcc
Confidence 999999999999999999999999999999999999999999999888853
No 9
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=3.6e-90 Score=742.02 Aligned_cols=452 Identities=51% Similarity=0.858 Sum_probs=431.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
+|||||||+|||+++++++++|+++|+++++++++.|.++++.++||+.++++|....++|+|.+.|+++|++.++|+||
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~ 82 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH 82 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 45899999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 009316 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp 228 (537)
|+|||++|++.+++.+++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||
T Consensus 83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp 162 (467)
T PRK12833 83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA 162 (467)
T ss_pred ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999854477899999999999999999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeE
Q 009316 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~ 308 (537)
..|+||+||++|++.+||.++++.+..++...|+++.+++|+||++++|+++++++|++ +++++++++|++|++++++.
T Consensus 163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~ 241 (467)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL 241 (467)
T ss_pred CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence 99999999999999999999999988888788888999999999977999999999877 78999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-CCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcC
Q 009316 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (537)
Q Consensus 309 e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~-~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G 387 (537)
+++|++.++++.+++|.+.+.++++++||.|++|+||+++ ++|++||||||||+|++|+++++++|+|++++++++++|
T Consensus 242 e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G 321 (467)
T PRK12833 242 EEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADG 321 (467)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHCC
Confidence 9999888999999999999999999999999999999998 568899999999999999999999999999999999999
Q ss_pred CCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHH
Q 009316 388 GKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (537)
Q Consensus 388 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~e 467 (537)
+++.+.+.++..+||++++|+++|||.++|.|++|+++.+..|.+||||+|++++.|+.|+++|||++||||+||+|+++
T Consensus 322 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~ 401 (467)
T PRK12833 322 EPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAA 401 (467)
T ss_pred CCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHH
Confidence 99998887888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccCCc
Q 009316 468 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQ 521 (537)
Q Consensus 468 a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~ 521 (537)
|++++.++|++++|+|++||++||++||.||+|++|+++|+||++++.++-+..
T Consensus 402 a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 455 (467)
T PRK12833 402 ALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTNFLEAWLAEWRAAL 455 (467)
T ss_pred HHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999887775443
No 10
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=1e-90 Score=798.08 Aligned_cols=445 Identities=49% Similarity=0.815 Sum_probs=428.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCC---CCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA---PSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~---~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
||||+||||||+||+|+|+++|+++|++|+++|..+.|+.+||+.+++++. ...++|+|++.|+++|+++++|+|||
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999999999999999999999999999765 34589999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998544678999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+||++|++.+||.++++.+.+++...|+++.+++|+||++++|++|++++|++|+++++.+|+|++|++|+++++
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
++|++.++++.+++|.+.+.++++++||.|+++|||+++++|++||||||||+|++|+++|+++|+|++++|++++.|.+
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~ 320 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGAS 320 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCCC
Confidence 99998899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CC------CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeee-ccCCCccCCCCCCccEEEEEEc
Q 009316 390 LR------YKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSH-VYPDYVVPPSYDSLLGKLIVWA 462 (537)
Q Consensus 390 l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~-~~~G~~v~~~~ds~ig~vi~~g 462 (537)
++ +.|+++.++||||+|||++|||.++|.|++|+|+.|..|+++|||+|++ .+.|+.|+|+||||++|||+||
T Consensus 321 L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~ 400 (1143)
T TIGR01235 321 LPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWA 400 (1143)
T ss_pred CCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeC
Confidence 98 5678889999999999999999999999999999999999999999998 6799999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhc
Q 009316 463 PTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (537)
Q Consensus 463 ~~~~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~ 517 (537)
+||++|++||.+||++++|+|++||++||+.||.||+|++|+++|+||+++.+.+
T Consensus 401 ~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t~~~~~~~~l~ 455 (1143)
T TIGR01235 401 STPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDTRFIDTTPELF 455 (1143)
T ss_pred CCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccchhhhcChhhc
Confidence 9999999999999999999999999999999999999999999999999984433
No 11
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=2.9e-86 Score=765.10 Aligned_cols=449 Identities=50% Similarity=0.843 Sum_probs=428.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~-~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
+|+|||||+|||++|++++++|+++|++++++|++.|..+++..+||++++++.. ...++|+|++.|+++|+++++|+|
T Consensus 3 ~~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI 82 (1146)
T PRK12999 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAI 82 (1146)
T ss_pred CcccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEE
Confidence 4689999999999999999999999999999999999999999999999999754 345799999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvK 227 (537)
||||||++|++.+++.|+++|++|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+|||
T Consensus 83 ~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVK 162 (1146)
T PRK12999 83 HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLK 162 (1146)
T ss_pred EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999985336889999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeecccccee
Q 009316 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~ 307 (537)
|+.|+||+||++|++.+||.++++.+.+++...|+++.+++|+||+|++|+++++++|++|+++++++|+|++|++||++
T Consensus 163 P~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ 242 (1146)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1146)
T ss_pred ECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccE
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcC
Q 009316 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (537)
Q Consensus 308 ~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G 387 (537)
++.+|++.++++.+++|.+.+.++++++||.|++|+||+++++|++||||||||+|++|+++|+++|+|++++++++++|
T Consensus 243 ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G 322 (1146)
T PRK12999 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEG 322 (1146)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCC
Confidence 99999988999999999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred CCCCC------CccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeecc-CCCccCCCCCCccEEEEE
Q 009316 388 GKLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVY-PDYVVPPSYDSLLGKLIV 460 (537)
Q Consensus 388 ~~l~~------~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~-~G~~v~~~~ds~ig~vi~ 460 (537)
.++.. .|..+..+||||+|||++|||.++|.|++|+|+.+..|++++||+|.++. .|..|+++|||+++|||+
T Consensus 323 ~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~ 402 (1146)
T PRK12999 323 ATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTA 402 (1146)
T ss_pred CCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEE
Confidence 99865 45667788999999999999999999999999999999999999999875 899999999999999999
Q ss_pred EcCCHHHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhc
Q 009316 461 WAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (537)
Q Consensus 461 ~g~~~~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~ 517 (537)
||+|+++|+++|.+||++++|+|++||++||+.||.||+|++|+++|+||+++.+.+
T Consensus 403 ~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~l~ 459 (1146)
T PRK12999 403 WGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTTSFIDETPELF 459 (1146)
T ss_pred EcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccchhhhcChhhh
Confidence 999999999999999999999999999999999999999999999999999984433
No 12
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=1.9e-85 Score=703.19 Aligned_cols=445 Identities=60% Similarity=1.012 Sum_probs=426.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|+|+++++++++||++|+++++++++.|.++++..+||+.+++++....++|.|++.++++|++.++|+|||
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 58999999999999999999999999999999888999999999999999987777789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
+|||++|+..++..+++.|++++||++++++.++||..+|++++++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~ 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 (447)
T ss_pred CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998534578899999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+|++++++.+||.++++.+..+....|+++.+++|+||+|++|++++++.|.+|+++++++++|+.++++++..+
T Consensus 161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~ 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence 99999999999999999999999888777778888999999999989999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
.+|++.+++++++++.+.+.++++++||.|++++||+++++|++||+|||||++++|++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~ 320 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEK 320 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCCC
Confidence 99988899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
+++.+.++...||++++||++|+|...|.|++|.++.+..|.++++|+|+++..|+.++++||+++|+||++|+|+++|+
T Consensus 321 l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~ 400 (447)
T PRK05586 321 LSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAI 400 (447)
T ss_pred CCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHH
Confidence 98877777888999999999999999999999999999989889999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccch
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 514 (537)
+++.+||+++.|+|++||++||+.||.||+|.+|+++|+||++++
T Consensus 401 ~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 401 QKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 999999999999999999999999999999999999999999875
No 13
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=3.7e-84 Score=693.93 Aligned_cols=446 Identities=66% Similarity=1.078 Sum_probs=425.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|||||||+|+|+++++++++||++|++|+++++++|.++++.+++|+.+.+++....++|+|++.|+++|+++++|+|||
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 58999999999999999999999999999999888889999999999999987777889999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
++|+++|++.+++.++++|++++||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||.
T Consensus 81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~ 160 (449)
T TIGR00514 81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160 (449)
T ss_pred CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998544678999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+|++++++.+||.++++.+.+.....+++..+++|+||+|++|++++++.|++|+++++++++|+.++++++.++
T Consensus 161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (449)
T TIGR00514 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 (449)
T ss_pred CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence 99999999999999999999998877666667778999999999989999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
..|++.++++.+++|.+.+.++++++||.|++|+||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~ 320 (449)
T TIGR00514 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEP 320 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCCC
Confidence 99988899999999999999999999999999999999977889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++..+..+..+|+++++||++|||...|.|++|.++.+..|.++|+|+|+++.+|+.|+++||+++|+||++|+|++||+
T Consensus 321 l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 400 (449)
T TIGR00514 321 LSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAI 400 (449)
T ss_pred CCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHH
Confidence 98777777788999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchh
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 515 (537)
+++.+||++++|+|++||++||+.|+.|++|.+|+++|+||++++.
T Consensus 401 ~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 401 ARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 9999999999999999999999999999999999999999998753
No 14
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=5.8e-82 Score=676.72 Aligned_cols=443 Identities=55% Similarity=0.925 Sum_probs=418.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
.||||||+|||+++++++++||++|++|+++++++|.++++.++||+.+++++....++|.|++.|+++|+++++|+|||
T Consensus 3 ~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 3 EIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 48999999999999999999999999999999999999999999999999988777889999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
++|+++|+..+++.++++|++++||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||.
T Consensus 83 g~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~ 162 (445)
T PRK08462 83 GYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162 (445)
T ss_pred CCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999997544678999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+|+++++|.+||.++++.+..+....++++.+++|+||+|++|++++++++.+|+++++++++|+.++++++.++
T Consensus 163 ~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~ 242 (445)
T PRK08462 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIE 242 (445)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEE
Confidence 99999999999999999999998877766667778999999999889999999999889999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
.+|+..++++.++++.+.+.++++++||.|++|+||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 243 ~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~ 322 (445)
T PRK08462 243 ESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEE 322 (445)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCCCC
Confidence 99987799999999999999999999999999999999977789999999999999999999999999999999999998
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++.. .....+|+|+++|+++++|. .|.|++|.+..+..|....+|++.+...|+.++++||+++|+||++|+|+++|+
T Consensus 323 l~~~-~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~ 400 (445)
T PRK08462 323 LPSQ-ESIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAI 400 (445)
T ss_pred cccc-cccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHH
Confidence 8632 34567899999999999985 589999999999888788899999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccch
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 514 (537)
+++.++++.++|+|++||++||+.||.||+|++|+++|+||++|+
T Consensus 401 ~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 401 AKMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred HHHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 999999999999999999999999999999999999999999874
No 15
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=8e-81 Score=669.37 Aligned_cols=446 Identities=61% Similarity=1.016 Sum_probs=423.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|||||||+|+|+++++++++|+++|+++++++++.|.++++.++||+.+.+++....++|.|.++|+++|++.++|+|+|
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 58999999999999999999999999999999888888899999999998887777789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
++|+++|+..+++.++++|++++||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~ 160 (451)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (451)
T ss_pred CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997534678999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+|++++++.+||.++++.+..+....++++.+++|+||+|++|++++++.|++|++++++.++|+.++++++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (451)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence 99999999999999999999999887766667788999999999889999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
..|++.++++.+++|.+.+.++++++||.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~ 320 (451)
T PRK08591 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEP 320 (451)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCCC
Confidence 99987799999999999999999999999999999999977889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++..+.....+|+++++||++|||...|.|++|.+..+..|.++++|++.++.+|+.++++||+++|+||++|+|+++|+
T Consensus 321 l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~ 400 (451)
T PRK08591 321 LSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAI 400 (451)
T ss_pred CCCcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHH
Confidence 98766666778999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchh
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 515 (537)
+++.+++++++|+|++||++||++||.||+|++|+++|+||++++.
T Consensus 401 ~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 446 (451)
T PRK08591 401 ARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLA 446 (451)
T ss_pred HHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCcccHHHHhhhh
Confidence 9999999999999999999999999999999999999999998743
No 16
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=5.3e-77 Score=691.71 Aligned_cols=440 Identities=48% Similarity=0.808 Sum_probs=418.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
||||||+|+|+++++++++|+++|++++++++++|..+.++.+||+.+++++.+..++|.|.++|+++|+++++|+|||+
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 68999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecC
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~ 230 (537)
|||++|+..+++.|++.|++++||++++++.++||..+|++|+++|||++|++ ..+.+.+++.++++++|||+||||..
T Consensus 81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~ 159 (1201)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTA 159 (1201)
T ss_pred CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECC
Confidence 99999999999999999999999999999999999999999999999998864 56789999999999999999999999
Q ss_pred CCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEE
Q 009316 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~ 310 (537)
|+||+||++|++.+|+.++++.+.+.+...|++..+++|+||++++|++++++.|++|+++.+++++|+++++++|++++
T Consensus 160 ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee 239 (1201)
T TIGR02712 160 GGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE 239 (1201)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEE
Confidence 99999999999999999999999887777788889999999997799999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 311 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 311 ~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
+|++.++++.+++|.+.+.++++++||.|++++||++++ +|++||||||||+|++|++++.++|+|++++++++++|++
T Consensus 240 ~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~~ 319 (1201)
T TIGR02712 240 TPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGEL 319 (1201)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCCC
Confidence 999889999999999999999999999999999999984 5779999999999999999999999999999999999999
Q ss_pred CCCCcccc--ccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHH
Q 009316 390 LRYKQEDI--VLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (537)
Q Consensus 390 l~~~~~~~--~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~e 467 (537)
+++.+... ...|+++++|+|+|||.++|.|++|.++.+..|+ ++|+|.++..|++|+++||+++|+||++|+|+++
T Consensus 320 ~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~--~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~e 397 (1201)
T TIGR02712 320 PDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPD--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDRED 397 (1201)
T ss_pred CCccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCC--eEEEeceecCCCEECCccCCCeEEEEEEECCHHH
Confidence 87664433 4679999999999999999999999999887664 5999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccc
Q 009316 468 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKH 513 (537)
Q Consensus 468 a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 513 (537)
|++++.++|++++|+|++||++||++|+.+++|++|+++|+||++.
T Consensus 398 A~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 398 AILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred HHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 9999999999999999999999999999999999999999999763
No 17
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=8.1e-74 Score=626.55 Aligned_cols=448 Identities=36% Similarity=0.577 Sum_probs=413.7
Q ss_pred CCCCCCCCEEEEEcCcHHHHHHHHHHHHcCC---------cEEEEecCCC--CCCchhhccCEEEEcCCCCCCCCCCCHH
Q 009316 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGI---------PCVAVYSTID--KDALHVKLADESVCIGEAPSSQSYLLIP 133 (537)
Q Consensus 65 ~~~~~~~~~iLI~~~g~ia~~ii~aa~~~Gi---------~~v~v~~~~d--~~~~~~~~ad~~~~i~~~~~~~sy~~~~ 133 (537)
.++.+.++||||+|.|--|+.-+++.|+.-+ +.|+..+..| .++.+.++||+.+.++.+++.+.|.|+|
T Consensus 48 ~gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVd 127 (2196)
T KOG0368|consen 48 LGGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVD 127 (2196)
T ss_pred hcCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHH
Confidence 3556779999999999999999999998643 3344444333 6788999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC---------
Q 009316 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD--------- 204 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~--------- 204 (537)
.|+++|++..+|+|++|||..|||+.+.+.+.+.||.|+||+..+|..++||....-+++.+|||+.|++.
T Consensus 128 lIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~ 207 (2196)
T KOG0368|consen 128 LIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIE 207 (2196)
T ss_pred HHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------------cCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 009316 205 ---------------GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 269 (537)
Q Consensus 205 ---------------~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvE 269 (537)
..+.+.+|..+.++++|||+|||+..||||+|++.|++.+|+...|+++..+ +++.++++.
T Consensus 208 ~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlM 283 (2196)
T KOG0368|consen 208 DKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLM 283 (2196)
T ss_pred ccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeee
Confidence 1245788999999999999999999999999999999999999999999877 466899999
Q ss_pred ecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-
Q 009316 270 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD- 348 (537)
Q Consensus 270 e~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~- 348 (537)
+...++||+|||+++|++|+++.+..||||+||||||++|++|+...+.+..++|.+.|+++++.+||.+++|||+++.
T Consensus 284 K~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp 363 (2196)
T KOG0368|consen 284 KLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSP 363 (2196)
T ss_pred ecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEec
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCCCCCC---------------------ccccccceeEEEEE
Q 009316 349 ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK---------------------QEDIVLQGHSIECR 407 (537)
Q Consensus 349 ~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~l~~~---------------------~~~~~~~g~ai~~r 407 (537)
++|+|||||.|||+|++||.||+++|+||...|+++|+|.||.-. +..+.++||++.||
T Consensus 364 ~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~R 443 (2196)
T KOG0368|consen 364 DDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAAR 443 (2196)
T ss_pred CCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEE
Confidence 589999999999999999999999999999999999999998311 11235789999999
Q ss_pred EeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEee-ecc
Q 009316 408 INAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPT 486 (537)
Q Consensus 408 i~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g-~~t 486 (537)
|+.|||+.+|.|+.|+|..+..++.+.+.-.+.+..|..|..+-||.+||+.++|.||++|++.|.-||+++.|+| ++|
T Consensus 444 ITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT 523 (2196)
T KOG0368|consen 444 ITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRT 523 (2196)
T ss_pred eeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCc
Confidence 9999999999999999999988888887766777888899999999999999999999999999999999999999 999
Q ss_pred CHHHHHHhcCCccccCCcccccccccchhh
Q 009316 487 TIEYHKLILDVEDFKNGKVDTAFIPKHEQE 516 (537)
Q Consensus 487 n~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 516 (537)
+++||..||..++|+++.+||.||++.+..
T Consensus 524 ~VeYLI~LLet~dF~~N~i~TgWLD~~Ia~ 553 (2196)
T KOG0368|consen 524 TVEYLIDLLETEDFESNKIDTGWLDKRIAM 553 (2196)
T ss_pred hHHHHHHHHHhhhhhhccCcchhHHHHHHH
Confidence 999999999999999999999999997654
No 18
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=8.6e-70 Score=583.92 Aligned_cols=444 Identities=51% Similarity=0.823 Sum_probs=409.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|+|+.+++++++|+++|+++++++++.+..+.+..+||+.+.+++....++|.|.++++++|++.++|+|+|
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p 80 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999999999999999999888888888999999998876666789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
++|+++|+..+++.+++.|++++||++++++.++||..+|++|+++|||+|++....+.+.+++.+++++++||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~ 160 (450)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS 160 (450)
T ss_pred CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999889999999999999999999999999999999999999999996323458899999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|+||+|++++++.+|+.++++.+...+...++++.+++|+||+|++|++++++.+.+|+++.++.++|+.++++++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (450)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (450)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence 99999999999999999999998766555556778999999999988999999999889999999888888888888888
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
.+|++.+++++.+++.+.+.++++++||.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~ 320 (450)
T PRK06111 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEK 320 (450)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCCC
Confidence 88988889999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++..+.+....++++..++|++++. .+.|.+|.++.+..+..++++++.++..|++|++.+++++|+|+++|+|+++|.
T Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 399 (450)
T PRK06111 321 LSFTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAI 399 (450)
T ss_pred CCCccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHH
Confidence 8766555566788999999998774 568889999887666667899999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccch
Q 009316 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 514 (537)
+++.++++.++|+|++||+++|+.+|.+|+|.+|.++|.||++.+
T Consensus 400 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (450)
T PRK06111 400 SRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAGGYTTGFLTKQL 444 (450)
T ss_pred HHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCCcccchHHhhhh
Confidence 999999999999999999999999999999999999999998763
No 19
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=8.4e-45 Score=396.57 Aligned_cols=384 Identities=20% Similarity=0.239 Sum_probs=307.3
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009316 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 66 ~~~~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d 145 (537)
+...+.|||+|+|+|..+..++++|+++|+++++++. +++++...++|+.+.. +|.|.+.+.+++++ +|
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~--~~~apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~d 85 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDP--LEDCPASSVAARHVVG-------SFDDRAAVREFAKR--CD 85 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC--CCCCchhhhCceeeeC-------CCCCHHHHHHHHHH--CC
Confidence 3446678999999999999999999999999999954 5557788899988753 58999999999987 78
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEE
Q 009316 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225 (537)
Q Consensus 146 ~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~Pvv 225 (537)
+|...... -+....+.+++.|+++ +|+++++..++||..+|++|+++|||+|++ ..+.+.+++.++.+++|||+|
T Consensus 86 vIt~e~e~--v~~~~l~~le~~gi~v-~ps~~al~i~~DK~~~K~~l~~~GIptp~~--~~v~~~~el~~~~~~ig~P~V 160 (577)
T PLN02948 86 VLTVEIEH--VDVDTLEALEKQGVDV-QPKSSTIRIIQDKYAQKVHFSKHGIPLPEF--MEIDDLESAEKAGDLFGYPLM 160 (577)
T ss_pred EEEEecCC--CCHHHHHHHHhcCCcc-CCCHHHHHHhcCHHHHHHHHHHCCcCCCCe--EEeCCHHHHHHHHHhcCCcEE
Confidence 88743211 1245668889999874 799999999999999999999999999999 678899999899999999999
Q ss_pred EeecCCC-CCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeecccc
Q 009316 226 IKATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRN 304 (537)
Q Consensus 226 vKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~ 304 (537)
|||..++ +|+|++++++.+|+.++++.+... +..+++|+||++.+|++|.++.+.+|++..+.. .+..++++
T Consensus 161 vKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~------~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~-~E~~~~~~ 233 (577)
T PLN02948 161 LKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF------ERGLYAEKWAPFVKELAVMVARSRDGSTRCYPV-VETIHKDN 233 (577)
T ss_pred EEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC------CCcEEEEecCCCCeEEEEEEEECCCCCEEEecC-cccEEECC
Confidence 9999887 799999999999999998876421 368999999998899999999988888776543 33334444
Q ss_pred ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHH
Q 009316 305 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 305 ~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~ 384 (537)
.......|+. ++++.++++.+.+.+++++|++.|++++||+++++|++||+|||||+++...++...+++|++++++|.
T Consensus 234 ~~~~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa 312 (577)
T PLN02948 234 ICHVVEAPAN-VPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRA 312 (577)
T ss_pred eeEEEEECCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHH
Confidence 4445567886 999999999999999999999999999999999889999999999999765566678999999999999
Q ss_pred HcCCCCCCCccccccceeEEEEEEeeCCCC-CCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcC
Q 009316 385 AMGGKLRYKQEDIVLQGHSIECRINAEDPF-KNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAP 463 (537)
Q Consensus 385 a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~-~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~ 463 (537)
++|.+++... ....+++++.+..++.. .++.+....+... ...|++++..+..++.+. .+++|||+++|+
T Consensus 313 ~lGlpl~~~~---~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~--~~~p~~~v~~ygk~~~r~----~rkmGhV~~~g~ 383 (577)
T PLN02948 313 VLGLPLGDTS---MKVPAAIMYNILGEDEGEAGFRLAHQLMGRA--LNIPGASVHWYGKPEMRK----QRKMGHITVVGP 383 (577)
T ss_pred HcCCCCCCcc---ccCCcEEEEEEeccccccccccchhhHHHHH--hhCCCCEEEEecCCCCCC----CCeeEEEEEecC
Confidence 9999986542 23356888899886532 1222221111111 123556654444444322 357999999999
Q ss_pred CHHHHHHHHHHhhhcceEe
Q 009316 464 TREKAIERMKRALNDTIIT 482 (537)
Q Consensus 464 ~~~ea~~~~~~al~~~~i~ 482 (537)
|++++.++++.+++.+.+.
T Consensus 384 ~~~e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 384 SAAEVEARLDQLLAEESAD 402 (577)
T ss_pred CHHHHHHHHHHHHhhhccC
Confidence 9999999999999876543
No 20
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=5.3e-45 Score=424.13 Aligned_cols=376 Identities=22% Similarity=0.318 Sum_probs=308.6
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
.+|||||+|.|.+ +..++++|+++|++|++++++++....+..++|+.+..+ .+.+.+.++
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p--------~~~~~v~~i 76 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKI 76 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECC--------CCHHHHHHH
Confidence 4799999999985 467999999999999999988887778888999988642 467899999
Q ss_pred HHHcCCCEEEeCCCc-----ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHH
Q 009316 139 AISRGCTMLHPGYGF-----LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (537)
Q Consensus 139 a~~~~~d~V~pg~g~-----lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~ 213 (537)
++++++|+|+|++|. +++....+..+++.|++++|+++++++.+.||..+|++|+++|+|+|++ ..+.+.+++
T Consensus 77 i~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~ 154 (1050)
T TIGR01369 77 IEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPES--EIAHSVEEA 154 (1050)
T ss_pred HHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCe--eecCCHHHH
Confidence 999999999999875 2222345668899999999999999999999999999999999999999 788999999
Q ss_pred HHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEE
Q 009316 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~ 293 (537)
.++++++|||+||||+.|+||+|+.+++|++||.+++......+ ...+++||+||+|.+|++++++.|.+|+++.+
T Consensus 155 ~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~ 230 (1050)
T TIGR01369 155 LAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCITV 230 (1050)
T ss_pred HHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEEEE
Confidence 99999999999999999999999999999999999987765432 22689999999998999999999999998876
Q ss_pred eeeeee--eccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCeEEEEEeccCCCcccchh
Q 009316 294 GERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 294 ~~r~~s--~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-~g~~~~lEiN~R~~g~~~~~e 370 (537)
...+.. ...+..+.+..+|+..++++..+++.+.+.+++++|||.|.++|||++++ +|++||+|||||+++++.+++
T Consensus 231 ~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s 310 (1050)
T TIGR01369 231 CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSRSSALAS 310 (1050)
T ss_pred eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCcchhhhh
Confidence 432210 01133455667898778999999999999999999999999999999995 578999999999999988999
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCC--CccC
Q 009316 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPD--YVVP 448 (537)
Q Consensus 371 ~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G--~~v~ 448 (537)
+++|+||.+.++++++|.+|...+.++. | +++ ..|.|+.+.+..- .| .+ ..+++.+ .+..
T Consensus 311 ~atG~pl~~~~~~~alG~~l~~~~n~i~--g---------~~~-~~~~p~~~~~~~k-~p---~~--~~~~~~~~~~~~~ 372 (1050)
T TIGR01369 311 KATGYPIAKVAAKLAVGYGLDELKNPVT--G---------TTP-ASFEPSLDYVVVK-IP---RW--DFDKFAGVDRKLG 372 (1050)
T ss_pred HHhCCCHHHHHHHHHcCCCchhhcCCCc--C---------cCc-cccCcCCCeEEEE-EE---eC--CCCCCCcccCCcC
Confidence 9999999999999999998865433222 2 333 3577887875421 12 11 2233332 2333
Q ss_pred CCCCCccEEEEEEcCCHHHHHHHHHHhhhc
Q 009316 449 PSYDSLLGKLIVWAPTREKAIERMKRALND 478 (537)
Q Consensus 449 ~~~ds~ig~vi~~g~~~~ea~~~~~~al~~ 478 (537)
..+.+ +|+|+++|+|+++|++|+.++|+.
T Consensus 373 ~~~k~-~G~v~~~g~~~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 373 TQMKS-VGEVMAIGRTFEEALQKALRSLEI 401 (1050)
T ss_pred cccce-eeEEEEECCCHHHHHHHHHHHhcc
Confidence 33333 999999999999999999999976
No 21
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=2.2e-44 Score=378.70 Aligned_cols=375 Identities=18% Similarity=0.219 Sum_probs=296.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g 152 (537)
||||+|+|..++.++++|+++|+++++++.+ ++++...++|+.+.+ ++.|.+.+.++++++++|+|+|..+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~--~~~~~~~~ad~~~~~-------~~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRY--ANAPAMQVAHRSYVI-------NMLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCC--CCCchhhhCceEEEc-------CCCCHHHHHHHHHHhCCCEEEeccC
Confidence 6999999999999999999999999999654 455667899998865 3788999999999999999999765
Q ss_pred cccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCC
Q 009316 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (537)
Q Consensus 153 ~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l-~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g 231 (537)
... ......+++.|+++ .|++++++.+.||..+|+++ +++|||+|++ ..+.+.+++.++++++|||+||||..|
T Consensus 72 ~v~--~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~VvKP~~g 146 (380)
T TIGR01142 72 AIA--TDALFELEKEGYFV-VPNARATKLTMNREGIRRLAAEELGLPTSRY--MFADSLDELREAVEKIGYPCVVKPVMS 146 (380)
T ss_pred ccC--HHHHHHHHhcCCee-CCCHHHHHHhhCHHHHHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 432 23345678889764 58999999999999999986 8999999998 678899999999999999999999999
Q ss_pred CCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEEc
Q 009316 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311 (537)
Q Consensus 232 ~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~~ 311 (537)
+||+|+.+|++.+||.++++.+...+. ..++.+++|+||++..|+++.++.+.+|++....... ..+..........
T Consensus 147 ~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~ 223 (380)
T TIGR01142 147 SSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPIG-HRQIDGDYHESWQ 223 (380)
T ss_pred cCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-eEEeCCeeEEEEC
Confidence 999999999999999999988754221 1246899999999768999998877677755432211 1222222233456
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCCCC
Q 009316 312 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (537)
Q Consensus 312 P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~l~ 391 (537)
|+. ++++..+++.+.+.+++++||+.|++|+||++++++ +||+|||||++++...+....|+|+++++++.++|.+++
T Consensus 224 p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~-~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~ 301 (380)
T TIGR01142 224 PQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDE-VIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPIP 301 (380)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCc-EEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCCC
Confidence 776 899999999999999999999999999999999765 999999999998754444445999999999999999876
Q ss_pred CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEE----ecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHH
Q 009316 392 YKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAY----LPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (537)
Q Consensus 392 ~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~----~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~e 467 (537)
... ..+.++...+.++.. |.+..+ .....|++++..+..+|... ...+|+|++.|+|.++
T Consensus 302 ~~~----~~~~~~~~~i~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~k~~~~~----~~~~G~v~~~~~s~~~ 365 (380)
T TIGR01142 302 GIP----QLGPAASAVIKAKVT--------GYSPAFRGLEKALSVPNTQVRLFGKPEAYV----GRRLGVALATAKSVEA 365 (380)
T ss_pred Ccc----ccCCceEEEEEcccc--------cccchhhHHHHHHcCCCCEEEECCCCcCCC----CCcCEEEEEecCCHHH
Confidence 322 344455666665432 322221 12234677766655556432 3469999999999999
Q ss_pred HHHHHHHhhhcceEe
Q 009316 468 AIERMKRALNDTIIT 482 (537)
Q Consensus 468 a~~~~~~al~~~~i~ 482 (537)
+.+++..+++.++|+
T Consensus 366 ~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 366 ARERAEEVAHAVEVR 380 (380)
T ss_pred HHHHHHHHHhhccCC
Confidence 999999999988763
No 22
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=6.2e-45 Score=422.14 Aligned_cols=340 Identities=19% Similarity=0.270 Sum_probs=283.5
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
..+||||+|.|++ ++.++++||++|+++++++++++..+.+..++|+.|.+ +++++.++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~--------pl~~e~vl~i 644 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNV 644 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEE--------eCCHHHHHHH
Confidence 3689999999984 46699999999999999999999999999999999985 6889999999
Q ss_pred HHHcCCCEEEeCCCc-------------ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCc
Q 009316 139 AISRGCTMLHPGYGF-------------LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG 205 (537)
Q Consensus 139 a~~~~~d~V~pg~g~-------------lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~ 205 (537)
++++++|+|+|++|- ++|++.|++ +...|+.++||++++++.+.||..+|++|+++|||+|++ .
T Consensus 645 ~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~--~ 721 (1102)
T PLN02735 645 IDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKG--G 721 (1102)
T ss_pred HHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCe--e
Confidence 999999999999883 333333333 444589999999999999999999999999999999999 6
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEe
Q 009316 206 LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285 (537)
Q Consensus 206 ~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d 285 (537)
.+.+.+++.++++++|||+||||..|+||+||++|++.+||.++++.+.+. +++.+++||+||++++|++|++++|
T Consensus 722 ~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D 797 (1102)
T PLN02735 722 IARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALAD 797 (1102)
T ss_pred EeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEEC
Confidence 788999999999999999999999999999999999999999999987654 3456899999998769999999999
Q ss_pred CCCCEEEEeeeeeeecc--ccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCC
Q 009316 286 KYGNVVHFGERDCSIQR--RNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 363 (537)
Q Consensus 286 ~~G~vv~~~~r~~s~~~--~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~ 363 (537)
++|+++.....+..... +........|++.++++.+++|.+.+.+++++|||.|++++||+++++|++||+|||||++
T Consensus 798 ~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s 877 (1102)
T PLN02735 798 SEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRAS 877 (1102)
T ss_pred CCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCC
Confidence 88888766543321110 1112233467767999999999999999999999999999999998778899999999999
Q ss_pred CcccchhhhcCCCHHHHHHHHHcCCCCC---CCccccccceeEEEEEEeeCCCCCCCCC-CCceEEEEe
Q 009316 364 VEHPVTEMISSVDLIEEQIHVAMGGKLR---YKQEDIVLQGHSIECRINAEDPFKNFRP-GPGIITAYL 428 (537)
Q Consensus 364 g~~~~~e~~tGidl~~~~i~~a~G~~l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~p-~~G~i~~~~ 428 (537)
+++|++++++|+|+++.++++++|++|. +.+.. .....++.+++. |...|.+ .++.-....
T Consensus 878 ~t~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~-~~~~~~vk~~vf---~~~~~~~~d~~lg~emk 942 (1102)
T PLN02735 878 RTVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEV-IPAHVSVKEAVL---PFDKFQGCDVLLGPEMR 942 (1102)
T ss_pred ccHHHHHHHHCCCHHHHHHHHHcCCChhhcCCCccc-ccCeEEEEeccC---ChhhCCCCCCCcceEEE
Confidence 9999999999999999999999999964 33322 234558888874 4555554 333334443
No 23
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=1.1e-45 Score=354.77 Aligned_cols=208 Identities=48% Similarity=0.828 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCC
Q 009316 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN 263 (537)
Q Consensus 184 dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~ 263 (537)
||..++++++++|+|++|+....+.+.+++.++++++|||++|||+.|+||+||+++++.++|.++++.+..++..+|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999995544599999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEE
Q 009316 264 DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTV 343 (537)
Q Consensus 264 ~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~v 343 (537)
.++++|+|+++++|++||+++|++|+++++++++|+.|+++++.++++|++.|+++.+++|.+.+.++++++||.|++|+
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC-CCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCCCC
Q 009316 344 EFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (537)
Q Consensus 344 Ef~~~~-~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~l~ 391 (537)
||++++ ++++||||||||+|++||++|++||+||+++++++++|++|.
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 999995 788999999999999999999999999999999999999875
No 24
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=9e-44 Score=412.46 Aligned_cols=378 Identities=21% Similarity=0.306 Sum_probs=305.6
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
.+|||||+|+|++ +..++++++++|++|++++++++....+..++|+.+. . ..+.+.+.++
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi-~-------p~~~e~v~~i 93 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYI-A-------PMTPELVEQV 93 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEe-C-------CCCHHHHHHH
Confidence 4899999999996 5579999999999999998877665556678999764 3 3567889999
Q ss_pred HHHcCCCEEEeCCCc-ccccHH--H--HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHH
Q 009316 139 AISRGCTMLHPGYGF-LAENAV--F--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (537)
Q Consensus 139 a~~~~~d~V~pg~g~-lsE~~~--~--a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~ 213 (537)
++++++|+|+|++|. ..++.. + ...++.+|++++|+++++++.+.||..+|++|+++|||+|++ ..+.+.+++
T Consensus 94 i~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~--~~v~s~eea 171 (1102)
T PLN02735 94 IAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPS--GIATTLDEC 171 (1102)
T ss_pred HHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCe--eEeCCHHHH
Confidence 999999999998753 223311 1 246789999999999999999999999999999999999998 678899999
Q ss_pred HHHHHhcC-CcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEE
Q 009316 214 VKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (537)
Q Consensus 214 ~~~~~~ig-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~ 292 (537)
.++++++| ||+||||+.+.||+|+.+|+|.+||.++++.+... ..+.+++||+||.|++|+++++++|..|+++.
T Consensus 172 ~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~ 247 (1102)
T PLN02735 172 FEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAA----SITSQVLVEKSLLGWKEYELEVMRDLADNVVI 247 (1102)
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence 99999999 99999999999999999999999999999876532 13578999999999889999999997788766
Q ss_pred Eeeeeee--eccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEe-CCCCeEEEEEeccCCCcccc
Q 009316 293 FGERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPV 368 (537)
Q Consensus 293 ~~~r~~s--~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vEf~~~-~~g~~~~lEiN~R~~g~~~~ 368 (537)
+...+.. ..-+.......+|++.++++..++|.+++.+++++||+. |.+++||+++ .+|++||+|||||+++++++
T Consensus 248 v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l 327 (1102)
T PLN02735 248 ICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSAL 327 (1102)
T ss_pred EeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCCCcchh
Confidence 5433210 111234456678987799999999999999999999995 9999999999 57889999999999999999
Q ss_pred hhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccC
Q 009316 369 TEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVP 448 (537)
Q Consensus 369 ~e~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~ 448 (537)
.+++||+|+++.++++|+|.+|...+.++.... + ..|.|+.+.+..- .|..+ ++........+.
T Consensus 328 ~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~-----------~-a~~ep~~d~~~~k-~p~~~---f~~f~~~~~~l~ 391 (1102)
T PLN02735 328 ASKATGFPIAKMAAKLSVGYTLDQIPNDITLKT-----------P-ASFEPSIDYVVTK-IPRFA---FEKFPGSQPILT 391 (1102)
T ss_pred hhhhhCCCHHHHHHHHHCCCChhhhcccccccc-----------c-hheeecCCcEEEE-cccCC---cccccCCCcccc
Confidence 999999999999999999999865443332111 1 3577775555432 22222 222223344566
Q ss_pred CCCCCccEEEEEEcCCHHHHHHHHHHhhhc
Q 009316 449 PSYDSLLGKLIVWAPTREKAIERMKRALND 478 (537)
Q Consensus 449 ~~~ds~ig~vi~~g~~~~ea~~~~~~al~~ 478 (537)
+...| .|.|++.|+|.+||+.|+.+.++.
T Consensus 392 ~~mks-~ge~m~~gr~~~ea~~ka~~~~~~ 420 (1102)
T PLN02735 392 TQMKS-VGEAMALGRTFQESFQKALRSLET 420 (1102)
T ss_pred eeeee-cceEEEecCCHHHHHHHHHHHhcC
Confidence 66666 899999999999999999998854
No 25
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=2.7e-43 Score=368.82 Aligned_cols=364 Identities=20% Similarity=0.317 Sum_probs=294.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+++|+|+|+|..+..++.+|+++|+++++++ ++.+++...++|+.+.. +|.|.+.+.++++ .+|+|.+
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d--~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a~--~~dvit~- 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLD--PDPDSPAAQVADEVIVA-------DYDDVAALRELAE--QCDVITY- 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEe--CCCCCchhHhCceEEec-------CCCCHHHHHHHHh--cCCEEEe-
Confidence 5789999999999999999999999999994 45566778889998864 4899999999997 5899874
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecC
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~ 230 (537)
++..-.....+.+++. ..++|++++++.++||..+|++|+++|||+|++ ..+.+.+++.++++++|||+|+||..
T Consensus 70 -e~e~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~--~~v~s~~~l~~~~~~~g~P~vlKp~~ 144 (372)
T PRK06019 70 -EFENVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPF--AVVDSAEDLEAALADLGLPAVLKTRR 144 (372)
T ss_pred -CcCCCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCcEEEEeCC
Confidence 3321224445555555 346799999999999999999999999999999 77899999999999999999999998
Q ss_pred CC-CCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 231 GG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 231 g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
|+ +|+|++++++.+|+.++++.+ ++..+++|+||++.+|+++.++.+.+|+++.+...+ ..++.......
T Consensus 145 ~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e-~~~~~gi~~~~ 215 (372)
T PRK06019 145 GGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVE-NVHRNGILRTS 215 (372)
T ss_pred CCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCcc-cEEeCCEEEEE
Confidence 65 899999999999999988764 247899999999769999999998888887665433 23333333345
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
..|+. +++++.+++.+.+.+++++|||.|++++||+++++|++||+|||||++++..++..++++|++++++++.+|.+
T Consensus 216 ~~pa~-~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Glp 294 (372)
T PRK06019 216 IAPAR-ISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGLP 294 (372)
T ss_pred ECCCC-CCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCCC
Confidence 67875 89999999999999999999999999999999988899999999999998778889999999999999999998
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++. ......+++..|..++. .. .+ +.. ....|++. .++|......+ ...+|||.+.|+|.+++.
T Consensus 295 l~~----~~~~~~~~m~nilg~~~---~~--~~-~~~--~~~~~~~~--~~~ygk~~~~~--~rk~Ghv~~~~~~~~~~~ 358 (372)
T PRK06019 295 LGT----TRLLSPAVMVNLLGDDW---LE--PR-WDA--LLALPGAH--LHLYGKAEARP--GRKMGHVTVLGDDVEALL 358 (372)
T ss_pred CCC----ccccCceEEEEEECchh---hh--hH-HHH--HhhCCCCE--EEECCCCCCCC--CCceEEEEeecCCHHHHH
Confidence 862 23455688888887532 00 01 111 11224554 45554434444 567999999999999999
Q ss_pred HHHHHhhh
Q 009316 470 ERMKRALN 477 (537)
Q Consensus 470 ~~~~~al~ 477 (537)
++++.+..
T Consensus 359 ~~~~~~~~ 366 (372)
T PRK06019 359 AKLEALAP 366 (372)
T ss_pred HHHHHHHh
Confidence 99999886
No 26
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=5.5e-42 Score=362.37 Aligned_cols=381 Identities=18% Similarity=0.232 Sum_probs=290.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.|+|||+|.|..+..++++++++|+++++++.+++ ++...++|..+.++ +.|.++++++++++++|+|+|+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~--~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVPE 82 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEEe
Confidence 36899999999999999999999999999965544 45566888877653 6788999999999999999997
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHH-HcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK-NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~-~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
.+... ......+++.|+++. |++++++.+.||..+|+++. ++|||+|++ ..+.+.+++.++++++|||+||||.
T Consensus 83 ~e~~~--~~~~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~--~~~~s~~~l~~~~~~~g~P~VvKP~ 157 (395)
T PRK09288 83 IEAIA--TDALVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPY--RFADSLEELRAAVEEIGYPCVVKPV 157 (395)
T ss_pred eCcCC--HHHHHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCc--eEECCHHHHHHHHHhcCCCEEEEeC
Confidence 65322 233455677788754 89999999999999999994 799999998 7889999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.|++|+|+++|++.+|+.++++.+....+ -.+..+++|+||++..|+++.++.+..|....+...+. .+........
T Consensus 158 ~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 234 (395)
T PRK09288 158 MSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIGH-RQEDGDYRES 234 (395)
T ss_pred CCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCccc-EEECCEEEEE
Confidence 99999999999999999999988654321 01368999999996599999999887655554432211 1111222233
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
..|+. ++++..+++.+.+.+++++||+.|++|+||++++++ +|++|+|||++++...+....|+|+++++++.++|.+
T Consensus 235 ~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~-~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 312 (395)
T PRK09288 235 WQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDE-VYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGLP 312 (395)
T ss_pred ECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCe-EEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCCC
Confidence 45775 899999999999999999999999999999999775 9999999999887544444459999999999999987
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEe-cCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYL-PAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 468 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~-~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea 468 (537)
++.. .....+..+.++++.... .. .+..+. ....+|+++.. +.. ........+|+|++.|+|.++|
T Consensus 313 ~~~~----~~~~~~~~~~~~~~~~~~-~~----~i~~~~~~~~~~g~~~~~--~~k--~~~~~~~~lG~v~~~g~~~~~a 379 (395)
T PRK09288 313 IPDI----RLYSPAASAVILAEGESA-NP----SFDGLAEALAVPGTDVRL--FGK--PEIRGGRRMGVALATGEDVEEA 379 (395)
T ss_pred CCcc----cccCCceeEEEecccccc-cc----chhhHHHHhcCCCCEEEE--ecC--CCCCCCCeeEEEEeecCCHHHH
Confidence 6322 223444555566543211 00 011111 11235554422 211 1122245699999999999999
Q ss_pred HHHHHHhhhcceEee
Q 009316 469 IERMKRALNDTIITG 483 (537)
Q Consensus 469 ~~~~~~al~~~~i~g 483 (537)
.++++++++.++|+|
T Consensus 380 ~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 380 REKAKEAASKVKVVG 394 (395)
T ss_pred HHHHHHHHhheeecc
Confidence 999999999999987
No 27
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=362.63 Aligned_cols=382 Identities=15% Similarity=0.153 Sum_probs=287.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCc---hhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~---~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
|||+|||++.+..+..++++|+++|+++++++++.+.... ....++....+ .+.+.++++++++++++|+
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~l~~~~~~~~~d~ 73 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVI-------INGDIDDLVEFLRKLGPEA 73 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhh-------cCCCHHHHHHHHHHcCCCE
Confidence 7899999999999999999999999999999877654322 22233322222 2367899999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCC---c
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF---P 223 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~---P 223 (537)
|+|+.+. .....+...+..|+++ |++++++..++||..+|++|+++|||+|++ ..+.+.+++.++++++|| |
T Consensus 74 vi~~~e~--~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~--~~~~~~~e~~~~~~~~g~~~~P 148 (416)
T PRK07206 74 IIAGAES--GVELADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQ--INTADWEEAEAWLRENGLIDRP 148 (416)
T ss_pred EEECCCc--cHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccE--EecCCHHHHHHHHHhcCCCCCC
Confidence 9998643 2233445566777764 789999999999999999999999999998 678899999999999998 9
Q ss_pred EEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeee--ee
Q 009316 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF--GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD--CS 299 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~--g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~--~s 299 (537)
+||||..|+||+||++|+|.+|+.++++++.... ..+ .+..+++|+||+| .|++++++.. +|+++...... ..
T Consensus 149 ~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~ 225 (416)
T PRK07206 149 VVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLIG-TEYVVNFVSL-DGNHLVTEIVRYHKT 225 (416)
T ss_pred EEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEcccc-EEEEEEEEEE-CCEEEEEEeEEeeec
Confidence 9999999999999999999999999998875421 111 2368999999999 8999999874 45655432211 11
Q ss_pred eccccceeEEEcC-CCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEeCCCCeEEEEEeccCCCc--ccchhhhcCC
Q 009316 300 IQRRNQKLLEEAP-SPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVE--HPVTEMISSV 375 (537)
Q Consensus 300 ~~~~~~k~~e~~P-~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vEf~~~~~g~~~~lEiN~R~~g~--~~~~e~~tGi 375 (537)
.......+..... .+ .+....+++.+.+.++++++|+. |++|+||+++++| +++||||+|++|+ ..+++.++|+
T Consensus 226 ~~~~~~~~~~~~~~~p-~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEin~R~~G~~~~~~~~~~~G~ 303 (416)
T PRK07206 226 SLNSGSTVYDYDEFLD-YSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEIGARLDGGLHPDVARLATGD 303 (416)
T ss_pred ccCCCCceecccccCC-ccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEECCccCCCCccchhhhhcCc
Confidence 1111111111111 12 35678899999999999999996 9999999999888 8999999999987 3578899999
Q ss_pred CHHHHHHHHHcCCCCCCCc--cccccceeEEEEEEeeCCCCCCCCCCCceEEEEe----cCCCCeE-EEeeeccCCCccC
Q 009316 376 DLIEEQIHVAMGGKLRYKQ--EDIVLQGHSIECRINAEDPFKNFRPGPGIITAYL----PAGGPFV-RMDSHVYPDYVVP 448 (537)
Q Consensus 376 dl~~~~i~~a~G~~l~~~~--~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~----~~~~~~v-r~d~~~~~G~~v~ 448 (537)
|+++++++.++|.+..... ......+++....+. .|..|++..+. ....|++ .+..++..|+.|+
T Consensus 304 d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~ 375 (416)
T PRK07206 304 SQLDATVESLADPDVFRETLREGYRLKAHVFNVFLI--------SPAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYVP 375 (416)
T ss_pred CHHHHHHHHHhCchhhccccCCCcChhhceEEEEEe--------cCCCceEeCCccHHHHHhCCchhheEEecCCCCCcc
Confidence 9999999999998753221 111223343322232 24468887652 1223554 4667788999998
Q ss_pred CCCC--CccEEEEEEcCCHHHHHHHHHHhh
Q 009316 449 PSYD--SLLGKLIVWAPTREKAIERMKRAL 476 (537)
Q Consensus 449 ~~~d--s~ig~vi~~g~~~~ea~~~~~~al 476 (537)
+.-| ..+|++++.++|.+++.+..+++-
T Consensus 376 ~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~ 405 (416)
T PRK07206 376 QTVDLFSQPGTVYLVHKDKEQLWQDYEKIR 405 (416)
T ss_pred CceecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 7544 369999999999999887766554
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=1e-40 Score=347.40 Aligned_cols=351 Identities=20% Similarity=0.307 Sum_probs=279.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g 152 (537)
+|+|+|.|..+..++++|+++|++|+++ +.+.+++..+++|+.+.. +|.|.+.|.++++. +|.|.+.++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~--d~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e 69 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVL--DPDANSPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFE 69 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEE--CCCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcC
Confidence 4899999999999999999999999999 445667788999998843 58899999999975 788875432
Q ss_pred cccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCC
Q 009316 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (537)
Q Consensus 153 ~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~ 232 (537)
.. .....+.+++.|+++ +|++++++.++||..+|++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|+
T Consensus 70 ~i--~~~~l~~l~~~g~~~-~p~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~~g 144 (352)
T TIGR01161 70 HV--DVEALEKLEARGVKL-FPSPDALAIIQDRLTQKQFLQKLGLPVPPF--LVIKDEEELDAALQELGFPVVLKARTGG 144 (352)
T ss_pred cC--CHHHHHHHHhCCCeE-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCc--cEeCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 21 234567788888774 599999999999999999999999999999 6788999999999999999999999986
Q ss_pred -CCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEEc
Q 009316 233 -GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311 (537)
Q Consensus 233 -gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~~ 311 (537)
||+|++++++.+|+.++++.+ .+..+++|+||++.+|+++.++.+.+|++..+...+ ..++.........
T Consensus 145 ~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~~~~-~~~~~g~~~~~~~ 215 (352)
T TIGR01161 145 YDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAFYPVVE-NIHQDGILRYVVA 215 (352)
T ss_pred CCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEECCcc-cEEeCCEEEEEEC
Confidence 999999999999999888764 245899999999669999999988788876654322 2333333344567
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCCCC
Q 009316 312 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (537)
Q Consensus 312 P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~l~ 391 (537)
|+. ++++..+++.+++.++++++||.|++++||+++++|++||+|||||++++..++...+++|.++++++.++|.+++
T Consensus 216 p~~-~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l~ 294 (352)
T TIGR01161 216 PAA-VPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPLG 294 (352)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCCC
Confidence 775 8899999999999999999999999999999998889999999999999878888899999999999999999886
Q ss_pred CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCC
Q 009316 392 YKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPT 464 (537)
Q Consensus 392 ~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~ 464 (537)
.. .....++++.+...+ .. . .++... + ...|++. .++|......+ +..+|||.+.|.|
T Consensus 295 ~~----~~~~~~~m~n~~~~~-~~-~--~~~~~~-~--~~~~~~~--~~~y~k~~~~~--~rk~Ghi~~~~~~ 352 (352)
T TIGR01161 295 ST----ELLLPSVMVNLLGTE-DD-V--IPLWEE-I--LALPGAK--LHWYGKAEVRP--GRKVGHVNLVGSD 352 (352)
T ss_pred Cc----cccCCEEEEEEecCc-cc-h--HHHHHH-H--HhCCCCE--EEECCCCCCCC--CCcceEEEeecCC
Confidence 42 345558888888753 00 0 011111 1 1124444 45564434433 6779999998875
No 29
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.3e-40 Score=388.72 Aligned_cols=396 Identities=22% Similarity=0.316 Sum_probs=307.6
Q ss_pred CCCEEEEEcCcHHH-----------HHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 70 RQEKILVANRGEIA-----------VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~~iLI~~~g~ia-----------~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
.++||||+|+|++. ..++++++++|++|++++++++....+..++|..+..+ .+.+.+.++
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p--------~~~e~l~~i 77 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP--------ITPEFVEKI 77 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECC--------CCHHHHHHH
Confidence 37999999999963 57999999999999999877766666778899977542 468999999
Q ss_pred HHHcCCCEEEeCCCccc-ccH--HH--HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHH
Q 009316 139 AISRGCTMLHPGYGFLA-ENA--VF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (537)
Q Consensus 139 a~~~~~d~V~pg~g~ls-E~~--~~--a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~ 213 (537)
++++++|+|+|+.|... .+. .+ ...+++.|++++||++++++.+.||..+|++|+++|+|+|++ ..+.+.+++
T Consensus 78 i~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~ 155 (1066)
T PRK05294 78 IEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRS--GIAHSMEEA 155 (1066)
T ss_pred HHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCe--eeeCCHHHH
Confidence 99999999999875421 121 12 235788999999999999999999999999999999999999 788999999
Q ss_pred HHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEE
Q 009316 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~ 293 (537)
.++++++|||+||||+.|.||+|+.++++.+||.+++++..... ...++++|+||+|.+|+++.++.|++|+++.+
T Consensus 156 ~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~ 231 (1066)
T PRK05294 156 LEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKNDNCIIV 231 (1066)
T ss_pred HHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999988654321 23689999999998899999999999998877
Q ss_pred eeeeee--eccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEe-CCCCeEEEEEeccCCCcccch
Q 009316 294 GERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVT 369 (537)
Q Consensus 294 ~~r~~s--~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vEf~~~-~~g~~~~lEiN~R~~g~~~~~ 369 (537)
...+.. ..-+.......+|+..++++..+++.+.+.+++++||+. |++++||+++ .+|++||+|||||++++..++
T Consensus 232 ~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~~ 311 (1066)
T PRK05294 232 CSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSALA 311 (1066)
T ss_pred eeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCcceeee
Confidence 543211 001123345567886689999999999999999999999 9999999999 578899999999999998888
Q ss_pred hhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCC
Q 009316 370 EMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPP 449 (537)
Q Consensus 370 e~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~ 449 (537)
+.++|+|+.+..+++++|.++......+ .|. +. ..|.|+-..+.. ..| .+. .+++.+....+
T Consensus 312 s~~tG~pl~~~~~~~~lG~~l~~m~n~~--~g~---------~~-~~~~p~~~~v~~-k~p---~~~--~~~y~k~~~~~ 373 (1066)
T PRK05294 312 SKATGYPIAKVAAKLAVGYTLDEIKNDI--TGK---------TP-ASFEPSLDYVVT-KIP---RFA--FEKFPGADRRL 373 (1066)
T ss_pred eHhhCCCHHHHHHHHHcCCChHHhcCcc--cCC---------Cc-ccccccCCeEEE-Ecc---CCc--cccccCCCCCc
Confidence 9999999999999999999874322111 121 11 134454333221 122 333 45555433332
Q ss_pred --CCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeeec------cCHHHHHHhcCCcc
Q 009316 450 --SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP------TTIEYHKLILDVED 499 (537)
Q Consensus 450 --~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~------tn~~~~~~~~~~~~ 499 (537)
...+ +|+|++.|+|.++|++++.+.++. ...|.. .+.+-+..-|.||.
T Consensus 374 g~~mrk-~G~v~~~g~~~e~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 429 (1066)
T PRK05294 374 GTQMKS-VGEVMAIGRTFEESLQKALRSLEI-GVTGLDEDLFEEESLEELREELKEPT 429 (1066)
T ss_pred cceecc-cceEEEEcCCHHHHHHHHHHhcCC-CCCCCCccccccCCHHHHHhhcCCCC
Confidence 2233 899999999999999999999954 333432 22355566666663
No 30
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=3.7e-40 Score=379.00 Aligned_cols=379 Identities=17% Similarity=0.217 Sum_probs=298.6
Q ss_pred CCEEEEEcCcH--HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc-CCCEE
Q 009316 71 QEKILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~--ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~-~~d~V 147 (537)
-|+|++++.+. ++..++++++++||+++++.+++..+......++..+.. ++.|.+++++.+++. .+++|
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~-------d~~d~~~l~~~~~~~~~i~~V 74 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISA-------DTSDPDRIHRFVSSLDGVAGI 74 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEc-------CCCCHHHHHHHHHhcCCCCEE
Confidence 46788888654 567889999999999999976554333223345665544 478899999999886 68999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvK 227 (537)
+++.++. ....+++++.+|++ |++++++..++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+|||
T Consensus 75 ~~~se~~--v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~--~~v~~~~e~~~~~~~~~~PvVVK 148 (887)
T PRK02186 75 MSSSEYF--IEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRT--HALALRAVALDALDGLTYPVVVK 148 (887)
T ss_pred EeCchhh--HHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHhCCCCEEEE
Confidence 9875432 24566788888987 789999999999999999999999999998 67889999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeee--ccccc
Q 009316 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI--QRRNQ 305 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~--~~~~~ 305 (537)
|..|+||+||++|+|.+|+.++++.+... ++..+++|+||+| .||+|+++.+.. .+..++..+... ...+.
T Consensus 149 P~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g-~~~i~~i~~k~~~~~~~~v 221 (887)
T PRK02186 149 PRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVAR-GHQVLGITRKHLGPPPHFV 221 (887)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECC-cEEEEEEEeeecCCCCCeE
Confidence 99999999999999999999999876542 3578999999999 899999998744 333333222111 11122
Q ss_pred eeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEeCCCCeEEEEEeccCCCcc--cchhhhcCCCHHHHHH
Q 009316 306 KLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVEH--PVTEMISSVDLIEEQI 382 (537)
Q Consensus 306 k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vEf~~~~~g~~~~lEiN~R~~g~~--~~~e~~tGidl~~~~i 382 (537)
......|++ ++++..+++.+.+.++++++|+. |++|+||+++++| +||+|||||++|+. .+++.++|+|++++++
T Consensus 222 e~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 222 EIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred EeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 223356776 88999999999999999999997 9999999999766 99999999999884 4788899999999999
Q ss_pred HHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEec-----CCCCeEEEeeeccCCCccCCC--CCCcc
Q 009316 383 HVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLP-----AGGPFVRMDSHVYPDYVVPPS--YDSLL 455 (537)
Q Consensus 383 ~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~-----~~~~~vr~d~~~~~G~~v~~~--~ds~i 455 (537)
+.++|.++.... ...+++....+. .+..|+|..+.. +..+++++...+.+|+.|++. +.+++
T Consensus 300 ~~~lG~~~~~~~---~~~~~~ai~~~~--------~~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ 368 (887)
T PRK02186 300 DLHLGVAAFADP---TAKRYGAIRFVL--------PARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRI 368 (887)
T ss_pred HHhCCCCCCCCC---CCCCeEEEEEEe--------cCCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCcc
Confidence 999999875432 233443222222 234688877622 234567777778899999664 33579
Q ss_pred EEEEEEcCCHHHHHHHHHHhhhcceEe
Q 009316 456 GKLIVWAPTREKAIERMKRALNDTIIT 482 (537)
Q Consensus 456 g~vi~~g~~~~ea~~~~~~al~~~~i~ 482 (537)
|+|+++|+|++++.++++++.+.++|+
T Consensus 369 g~vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 369 AAVVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 999999999999999999999999885
No 31
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=6.4e-40 Score=381.75 Aligned_cols=408 Identities=21% Similarity=0.289 Sum_probs=313.0
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
.+|||||+|+|.+ +..++++++++|++++++++++........++|..+. . ..+.+.+.++
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~-e-------p~~~e~l~~i 77 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYF-E-------PLTVEFVKRI 77 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEE-C-------CCCHHHHHHH
Confidence 4799999999987 5689999999999999998777655555567887764 2 3568999999
Q ss_pred HHHcCCCEEEeCCCccc-ccHH--H--HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHH
Q 009316 139 AISRGCTMLHPGYGFLA-ENAV--F--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (537)
Q Consensus 139 a~~~~~d~V~pg~g~ls-E~~~--~--a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~ 213 (537)
++++++|+|+|..|... .+.. + ...+++.|++++||+++++..+.||..+|++|+++|+|+|++ ..+.+.+++
T Consensus 78 i~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~--~~v~s~ee~ 155 (1068)
T PRK12815 78 IAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPES--EIVTSVEEA 155 (1068)
T ss_pred HHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCc--eeeCCHHHH
Confidence 99999999999876321 2211 1 125788999999999999999999999999999999999999 788999999
Q ss_pred HHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEE
Q 009316 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~ 293 (537)
.++++++|||+||||..|.||+|+.+++|.+||.++++...... ...+++||+||+|.+|+++.++.|.+|+++.+
T Consensus 156 ~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~ 231 (1068)
T PRK12815 156 LAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNGNCITV 231 (1068)
T ss_pred HHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999997765431 13589999999998899999999998998876
Q ss_pred eeeeee--eccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC-CCeEEEEEeccCCCcccchh
Q 009316 294 GERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 294 ~~r~~s--~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~-g~~~~lEiN~R~~g~~~~~e 370 (537)
...+.. ........+..+|+..++++..+++.+++.+++++||+.|.+++||+++++ |++|++|||||++++..++.
T Consensus 232 ~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~ 311 (1068)
T PRK12815 232 CNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRSSALAS 311 (1068)
T ss_pred EeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccchhhhh
Confidence 543210 001112244457886689999999999999999999999999999999954 78999999999999999999
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCC
Q 009316 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPS 450 (537)
Q Consensus 371 ~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~ 450 (537)
.++|+|+.+..+++++|.+|+....++ .|.. + ..|.|.-..+ .+..| .+. .+++.+....+
T Consensus 312 ~atG~pl~~~~~~~alG~~l~ei~~~i--~g~~---------~-a~~ep~~d~~-~~k~p---~~~--f~~y~~~~~~~- 372 (1068)
T PRK12815 312 KATGYPIAKIAAKLAVGYTLNELKNPV--TGLT---------Y-ASFEPALDYV-VVKFP---RWP--FDKFGYADRTL- 372 (1068)
T ss_pred HhhCCcHHHHHHHHHcCCChHHhcCCc--cCCc---------c-cccCCccceE-EEEec---cCc--cccccCccccc-
Confidence 999999999999999999875322222 2211 1 1345554443 11222 333 44454332222
Q ss_pred CCCcc---EEEEEEcCCHHHHHHHHHHhhhcceEeeec-------cCHHHHHHhcCCc----------cccCC-------
Q 009316 451 YDSLL---GKLIVWAPTREKAIERMKRALNDTIITGVP-------TTIEYHKLILDVE----------DFKNG------- 503 (537)
Q Consensus 451 ~ds~i---g~vi~~g~~~~ea~~~~~~al~~~~i~g~~-------tn~~~~~~~~~~~----------~f~~~------- 503 (537)
.+.+ |+|++.|+|.++|++|+.++++. ...|.. .+-+-+...|.+| .|+.|
T Consensus 373 -g~kmks~G~v~~ig~~~eea~~ka~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~ 450 (1068)
T PRK12815 373 -GTQMKATGEVMAIGRNFESAFQKALRSLEI-KRNGLSLPIELSGKSDEELLQDLRHPDDRRLFALLEALRRGITYEEIH 450 (1068)
T ss_pred -cceecccceEEEecCCHHHHHHHHHHhhcC-CCCCCCCccccccCCHHHHHHHhccCCCChHHHHHHHHHcCCCHHHHH
Confidence 2334 99999999999999999999964 333332 1334455666666 45555
Q ss_pred ---ccccccccc
Q 009316 504 ---KVDTAFIPK 512 (537)
Q Consensus 504 ---~~~t~~~~~ 512 (537)
++|-+||.+
T Consensus 451 ~~t~i~~~~~~~ 462 (1068)
T PRK12815 451 ELTKIDPFFLQK 462 (1068)
T ss_pred HHHCCCHHHHHH
Confidence 556667765
No 32
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.8e-38 Score=337.95 Aligned_cols=387 Identities=21% Similarity=0.227 Sum_probs=272.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~-Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+||||+|.|.....++.++++. |+.++.+. +.. ......++.+.+ ++.|.+.+++++++.++|+|+++
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~--~~n--~g~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~ 69 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVA--PGN--AGTALLAENVVI-------DVTDIEALVAFAKEEGIDLTVVG 69 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEe--CCC--HHHHhhccccCC-------CCCCHHHHHHHHHHhCCCEEEEC
Confidence 4899999999888999999996 55566652 211 122222222322 47899999999999999999987
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecC
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~ 230 (537)
.+... ...+++.++++|++++||++++++.++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+||||..
T Consensus 70 ~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~P~VvKP~~ 146 (420)
T PRK00885 70 PEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAY--ETFTDAEEALAYLDEKGAPIVVKADG 146 (420)
T ss_pred CchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 53211 1355778899999999999999999999999999999999999998 67899999999999999999999999
Q ss_pred CCCCcceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEecccCCcEEEEEEEEeCCCCEEEEeee-eee-e-----c
Q 009316 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DCS-I-----Q 301 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g--~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r-~~s-~-----~ 301 (537)
|+||+||+++++.+|+.++++.+.... .|+ +..+++|+||+| +|+++.++.|+. .+..+... +.. . .
T Consensus 147 ~~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 222 (420)
T PRK00885 147 LAAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPLPTAQDHKRAGDGDTG 222 (420)
T ss_pred CCCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEeceeeEeeeecccCCCC
Confidence 999999999999999999998876421 222 358999999999 999999998754 55544332 110 0 0
Q ss_pred cccceeEEEcCCCCCCHHHHHHHHH-H---HHHHHHHcC--CcceeEEEEEEeCCCCeEEEEEeccCCCc-ccchhhhcC
Q 009316 302 RRNQKLLEEAPSPALTPELRKAMGD-A---AVAAAASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISS 374 (537)
Q Consensus 302 ~~~~k~~e~~P~~~l~~~~~~~l~~-~---a~~~~~alg--~~G~~~vEf~~~~~g~~~~lEiN~R~~g~-~~~~e~~tG 374 (537)
.........+|++.++++..+++.+ + +.+.++++| |.|+.|+||+++++| +|++|+|+|+++. +......++
T Consensus 223 ~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~~ 301 (420)
T PRK00885 223 PNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRLK 301 (420)
T ss_pred CCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhcc
Confidence 1111233457877688877766654 4 444555555 569999999999888 9999999999764 434445567
Q ss_pred CCHHHHHHHHHcCCCCCCCcccccc-ceeEEEEEEeeCCCCCCCCCCCce-EEEEecCCCCeEEE-eeecc-CCCccCCC
Q 009316 375 VDLIEEQIHVAMGGKLRYKQEDIVL-QGHSIECRINAEDPFKNFRPGPGI-ITAYLPAGGPFVRM-DSHVY-PDYVVPPS 450 (537)
Q Consensus 375 idl~~~~i~~a~G~~l~~~~~~~~~-~g~ai~~ri~ae~p~~~f~p~~G~-i~~~~~~~~~~vr~-d~~~~-~G~~v~~~ 450 (537)
.|+++.+++++.|...... ..+ ++.++.+.+.+... -..|..|. |..+.... ++.+ ...+. .+..+...
T Consensus 302 ~d~~~~~~~~~~g~~~~~~---~~~~~~~a~~~~~~~~gy--~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~ 374 (420)
T PRK00885 302 SDLVELLLAAADGKLDEVE---LEWDDRAAVGVVLAAKGY--PGDYRKGDVITGLEAAD--ADKVFHAGTKLEDGKLVTN 374 (420)
T ss_pred CCHHHHHHHHHcCCCCCCC---ceECCCcEEEEEEeCCCC--CCCCCCCCEeecccccC--CCEEEECceeccCCeEEEe
Confidence 8999999999999765432 222 34455333322110 11222232 22221111 1111 00111 11111111
Q ss_pred CCCccEEEEEEcCCHHHHHHHHHHhhhcceEeeec
Q 009316 451 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (537)
Q Consensus 451 ~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~ 485 (537)
..+++.||+.|+|++||.++++++++.+++.|..
T Consensus 375 -g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~~ 408 (420)
T PRK00885 375 -GGRVLCVTALGDTLEEAQKRAYAALDKIDFDGGF 408 (420)
T ss_pred -CCEEEEEEEecCCHHHHHHHHHHHHhccCCCCCE
Confidence 2469999999999999999999999999999843
No 33
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3.2e-38 Score=334.66 Aligned_cols=387 Identities=17% Similarity=0.208 Sum_probs=277.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.+||||+|.|.....++.++++.++.+.++....+......... ..+. -++.|.++|+++|++.++|+|+++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~-~~~~-------~~~~d~~~l~~~a~~~~iD~Vv~g 75 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELL-PADS-------FSILDKSSVQSFLKSNPFDLIVVG 75 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccc-cccC-------cCcCCHHHHHHHHHHcCCCEEEEC
Confidence 47999999999999999999999965544443333211110000 0011 257899999999999999999987
Q ss_pred CCcccccH---HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 009316 151 YGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 151 ~g~lsE~~---~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvK 227 (537)
. |++ .+++.++++|++++||+..++++++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+|||
T Consensus 76 ~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~--~~~~~~~ea~~~~~~~~~PvVVK 149 (426)
T PRK13789 76 P----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASY--KTFTEYSSSLSYLESEMLPIVIK 149 (426)
T ss_pred C----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCe--EeeCCHHHHHHHHHhcCCCEEEE
Confidence 6 553 46788899999999999999999999999999999999999998 77889999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEecccCCcEEEEEEEEeCCCCEEEEee-eeee-ecc-
Q 009316 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDCS-IQR- 302 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g--~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~-r~~s-~~~- 302 (537)
|..+++|+||.++++.+|+.++++.+... ..|+ +..++||+||+| +|+++.++.|+. .++.+.. ++.. ...
T Consensus 150 p~~~~~gkGV~vv~~~eel~~a~~~~~~~--~~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~lp~~~d~k~~~d~ 225 (426)
T PRK13789 150 ADGLAAGKGVTVATEKKMAKRALKEIFKD--KKFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLPAAQDHKRAFDG 225 (426)
T ss_pred eCCCCCCCcEEEECCHHHHHHHHHHHHhh--ccccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEccceEecccccCC
Confidence 99999999999999999999999987643 2344 348999999999 899999998764 4444432 2211 101
Q ss_pred ----ccceeEEEcCCCCCCHHHHHHHHH-HHHH---HHHHcC--CcceeEEEEEEeCCCCeEEEEEeccCCCcccchh--
Q 009316 303 ----RNQKLLEEAPSPALTPELRKAMGD-AAVA---AAASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE-- 370 (537)
Q Consensus 303 ----~~~k~~e~~P~~~l~~~~~~~l~~-~a~~---~~~alg--~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e-- 370 (537)
.......++|++.+++++.+++.+ .+.+ .+++.| |.|+.++||+++++|++||+|+|+|++ .|.++
T Consensus 226 d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R~G--dpe~~~l 303 (426)
T PRK13789 226 DQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFG--DPETQCV 303 (426)
T ss_pred CCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecCCC--CcHhhhh
Confidence 112345678988788888888765 3344 445556 779999999999888899999999995 33222
Q ss_pred -hhcCCCHHHHHHHHHcCCCCCCCcccccc-ceeEEEEEEeeCCCCCCCCCCCce-EEEEecCCCCeEEEe-eecc-CCC
Q 009316 371 -MISSVDLIEEQIHVAMGGKLRYKQEDIVL-QGHSIECRINAEDPFKNFRPGPGI-ITAYLPAGGPFVRMD-SHVY-PDY 445 (537)
Q Consensus 371 -~~tGidl~~~~i~~a~G~~l~~~~~~~~~-~g~ai~~ri~ae~p~~~f~p~~G~-i~~~~~~~~~~vr~d-~~~~-~G~ 445 (537)
.....||++.+++++.|+.... .+.+ .+.++.+.+.++ .... .+..|. |. +.....+++++. .+.. .+.
T Consensus 304 l~~l~~dl~~~~~~~~~g~l~~~---~~~~~~~~s~~vv~a~~-gyp~-~~~~g~~i~-~~~~~~~~~~if~a~~~~~~~ 377 (426)
T PRK13789 304 LAMLDGDLLELLYAASTGKIKVV---NLKLKQGAAAVVVLAAQ-GYPD-SYEKNIPLN-LPETSGQNVVLFHAGTKKKDG 377 (426)
T ss_pred hccCCCCHHHHHHHHHcCCCCCC---CceecCCceEEEEECcC-CcCC-CcCCCCEEe-ccCcCCCCcEEEEeeeeeeCC
Confidence 2246899999999999963321 1222 344444433332 1111 122343 33 321112344432 1111 122
Q ss_pred ccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009316 446 VVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 446 ~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
.+... ..++..|++.|+|.++|.++++++++.+.++|.
T Consensus 378 ~~~t~-ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~ 415 (426)
T PRK13789 378 KVFSS-GGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKT 415 (426)
T ss_pred EEEeC-CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 22222 345778889999999999999999999999984
No 34
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=4.2e-38 Score=335.70 Aligned_cols=389 Identities=18% Similarity=0.216 Sum_probs=274.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+||||+|.|..+..++++++++|+.+.++....+ ........+..+.+ ++.|.+.+++++++.++|+|+|+.
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGN-AGTARLAKNKNVAI-------SITDIEALVEFAKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccEEEEECCC-HHHhhhcccccccC-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence 4899999999999999999999976555533222 22211112222222 578999999999999999999976
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCc-EEEeecC
Q 009316 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATA 230 (537)
Q Consensus 152 g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~P-vvvKp~~ 230 (537)
+... ...+++.++++|++++||++++++.++||..+|++|+++|||+|++ ..+.+.+++.++++++||| +|+||..
T Consensus 73 e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~~~~~~~~~~~~~~~g~P~~VvKp~~ 149 (423)
T TIGR00877 73 EAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEY--EVFTDPEEALSYIQEKGAPAIVVKADG 149 (423)
T ss_pred chHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCe--EEECCHHHHHHHHHhcCCCeEEEEECC
Confidence 4210 1356788899999999999999999999999999999999999998 7789999999999999999 9999999
Q ss_pred CCCCcceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeee-ee-e-----c
Q 009316 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-CS-I-----Q 301 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g--~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~-~s-~-----~ 301 (537)
|+||+|++++++.+|+.++++.+.... |+ +..+++|+||+| .|+++.++.|+. .+..+...+ .. . .
T Consensus 150 ~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~~~ 224 (423)
T TIGR00877 150 LAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPMPPAQDHKRALEGDKG 224 (423)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECccC-ceEEEEEEEcCC-eEEeceeeeeeeecccCCCC
Confidence 999999999999999999998876543 33 357999999999 899999998854 555443321 10 0 0
Q ss_pred cccceeEEEcCCCCCCHHHHHH----HHHHHHHHHHHcC--CcceeEEEEEEeCCCCeEEEEEeccCCCccc-chhhhcC
Q 009316 302 RRNQKLLEEAPSPALTPELRKA----MGDAAVAAAASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVEHP-VTEMISS 374 (537)
Q Consensus 302 ~~~~k~~e~~P~~~l~~~~~~~----l~~~a~~~~~alg--~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~-~~e~~tG 374 (537)
.........+|++.+++...++ +.+.+.+.+.++| |.|++|+||+++++| +|++|||||+++... .....++
T Consensus 225 ~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~~ 303 (423)
T TIGR00877 225 PNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLK 303 (423)
T ss_pred CCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC-cEEEEEEccCCCccceeEecccC
Confidence 0011223356776577665544 3444555566655 579999999999888 999999999976532 2233467
Q ss_pred CCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEe---cCCCCeEEEeeeccCCCccCC--
Q 009316 375 VDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYL---PAGGPFVRMDSHVYPDYVVPP-- 449 (537)
Q Consensus 375 idl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~---~~~~~~vr~d~~~~~G~~v~~-- 449 (537)
+|+++.+++++.|...++... ..++.++.+.+.+.. |....++...+. ....+++++.. ...+.....
T Consensus 304 ~dl~~~~~~~~~g~l~~~~~~--~~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~ 376 (423)
T TIGR00877 304 SDLLEVCLAAVEGKLDEVELR--FDNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFH-AGTKQDNGKLV 376 (423)
T ss_pred CCHHHHHHHHHcCCCCCCCce--ECCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEE-CceeccCCEEE
Confidence 999999999999973221111 123444444443321 211223222221 11123433211 001111111
Q ss_pred CCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009316 450 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 450 ~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
....+++.||+.|+|+++|.++++++++.++++|.
T Consensus 377 ~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~ 411 (423)
T TIGR00877 377 TSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGM 411 (423)
T ss_pred EcCCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 12346999999999999999999999999999874
No 35
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=4.6e-38 Score=366.11 Aligned_cols=304 Identities=21% Similarity=0.335 Sum_probs=260.2
Q ss_pred CCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009316 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a 139 (537)
.+||||+|.|.+ +++++++++++|+++++++++++..+.....+|..+.- ..+.+.+++++
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~e--------p~~~e~vl~i~ 625 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFE--------PLTFEDVMNII 625 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEe--------cCCHHHHHHHH
Confidence 479999999976 68999999999999999998888777777889987642 35689999999
Q ss_pred HHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHh
Q 009316 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (537)
Q Consensus 140 ~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ 219 (537)
+++++|+|+|++|... ...+++.+++.|++++|+++++++.+.||..++++|+++|||+|++ ..+.+.+++.+++++
T Consensus 626 ~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~--~~v~s~ee~~~~~~~ 702 (1050)
T TIGR01369 626 ELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATSVEEAVEFASE 702 (1050)
T ss_pred hhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCe--EEECCHHHHHHHHHh
Confidence 9999999999876421 2357788999999999999999999999999999999999999999 788999999999999
Q ss_pred cCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeee
Q 009316 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299 (537)
Q Consensus 220 ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s 299 (537)
+|||+||||..+.||+||.+|+|.+||.++++++.... .+.++++|+||+|++|++|+++.|+ |+++..+..+..
T Consensus 703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s----~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~ 777 (1050)
T TIGR01369 703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHI 777 (1050)
T ss_pred cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhC----CCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEee
Confidence 99999999999999999999999999999999875432 3467999999995599999999985 466655432211
Q ss_pred ec--cccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCH
Q 009316 300 IQ--RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDL 377 (537)
Q Consensus 300 ~~--~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl 377 (537)
.. .+........|+..++++..+++.+++.++++++|+.|++|+||++++ |++|+||+|||++++.++++.++|+|+
T Consensus 778 ~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~-~~~yvIEvNpR~s~t~p~vs~atGi~l 856 (1050)
T TIGR01369 778 EEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD-GEVYVIEVNPRASRTVPFVSKATGVPL 856 (1050)
T ss_pred cccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC-CeEEEEEEeCCCCchHHHHHHHHCCCH
Confidence 11 111123334577668999999999999999999999999999999986 459999999999998999999999999
Q ss_pred HHHHHHHHcCCCCC
Q 009316 378 IEEQIHVAMGGKLR 391 (537)
Q Consensus 378 ~~~~i~~a~G~~l~ 391 (537)
++.++++++|.++.
T Consensus 857 ~~~~~~~~lG~~l~ 870 (1050)
T TIGR01369 857 IKLATRVMLGKKLE 870 (1050)
T ss_pred HHHHHHHHcCCCcc
Confidence 99999999999875
No 36
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=4e-37 Score=326.43 Aligned_cols=389 Identities=18% Similarity=0.220 Sum_probs=280.7
Q ss_pred EEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009316 75 LVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 75 LI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~ 153 (537)
||+|.|.....++.++++.... -+.+ .+. .+.....++.++++ . -++.|.+.|+++|++.++|+|++++++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~--~pg--n~g~~~~~~~~~vp---~-~~~~d~~~l~~~a~~~~id~vvvg~E~ 72 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFC--APG--NAGIATSGDATCVP---D-LDISDSAAVISFCRKWGVGLVVVGPEA 72 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEE--CCC--CHHHhhhccceeec---C-CCCCCHHHHHHHHHHcCCCEEEECCch
Confidence 7899999999999999998632 2222 222 23344445544441 1 257889999999999999999988743
Q ss_pred cccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCC
Q 009316 154 LAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (537)
Q Consensus 154 lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~ 232 (537)
+. +.+++.++..|++++||+.++++++.||..+|++|+++|||+|++ ..+.+.+++.+++++++||+||||..++
T Consensus 73 --~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~--~~~~~~~e~~~~~~~~g~PvVVKp~~~~ 148 (434)
T PLN02257 73 --PLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKY--ETFTDPAAAKKYIKEQGAPIVVKADGLA 148 (434)
T ss_pred --HHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence 33 477888899999999999999999999999999999999999998 6788999999999999999999999999
Q ss_pred CCcceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeee-e-eec-----cc
Q 009316 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-C-SIQ-----RR 303 (537)
Q Consensus 233 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g--~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~-~-s~~-----~~ 303 (537)
+|+||+++++.+|+.++++.+... ..|+ +..++||+||+| +|++++++.|+. .++.+.... . .+. ..
T Consensus 149 ~GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl~~~~dhkr~~d~d~g~n 224 (434)
T PLN02257 149 AGKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPN 224 (434)
T ss_pred CCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEEEeeeecccccCCCCCCC
Confidence 999999999999999999887532 2344 368999999999 799999998865 566554311 0 000 01
Q ss_pred cceeEEEcCCCCCCHHHHHHHHHH----HHHHHHHcC--CcceeEEEEEEe-CCCCeEEEEEeccCCCc-ccchhhhcCC
Q 009316 304 NQKLLEEAPSPALTPELRKAMGDA----AVAAAASIG--YIGVGTVEFLLD-ERGSFYFMEMNTRIQVE-HPVTEMISSV 375 (537)
Q Consensus 304 ~~k~~e~~P~~~l~~~~~~~l~~~----a~~~~~alg--~~G~~~vEf~~~-~~g~~~~lEiN~R~~g~-~~~~e~~tGi 375 (537)
......++|+|.+++++.+++.+. +.+.+++.| |.|+.++||+++ ++|++||||+|+|+|.. +..+...++.
T Consensus 225 tggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~ 304 (434)
T PLN02257 225 TGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLES 304 (434)
T ss_pred CCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcC
Confidence 223455788887898888875443 334455656 459999999998 67889999999999864 5566666999
Q ss_pred CHHHHHHHHHcCCCCCCCccccccc-eeEEEEEEeeCCCCCCCCCCCc-eEEEEecCC--CCeEEE-eeecc--CCCccC
Q 009316 376 DLIEEQIHVAMGGKLRYKQEDIVLQ-GHSIECRINAEDPFKNFRPGPG-IITAYLPAG--GPFVRM-DSHVY--PDYVVP 448 (537)
Q Consensus 376 dl~~~~i~~a~G~~l~~~~~~~~~~-g~ai~~ri~ae~p~~~f~p~~G-~i~~~~~~~--~~~vr~-d~~~~--~G~~v~ 448 (537)
||++++++++.|+.... ++.++ +.++ |-+.+...+. ..+..| .|..+.... .+++.+ ..+.. .+..+-
T Consensus 305 Dl~~~~~~~~~g~l~~~---~~~~~~~~av-~vv~a~~gYp-~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~ 379 (434)
T PLN02257 305 DLAQVLLAACKGELSGV---SLTWSPDSAM-VVVMASNGYP-GSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNVV 379 (434)
T ss_pred CHHHHHHHHHcCCCCCC---CceECCCceE-EEEEcCCCCC-CCCCCCCEeeCCccccccCCCCEEEECCceEccCCEEE
Confidence 99999999999974322 23333 3344 3343332111 112223 233332111 134332 11111 122222
Q ss_pred CCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeeec
Q 009316 449 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (537)
Q Consensus 449 ~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~ 485 (537)
+. ..++..|+++|+|.++|.++++++++.++++|..
T Consensus 380 t~-ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~ 415 (434)
T PLN02257 380 AA-GGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGF 415 (434)
T ss_pred EC-CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCE
Confidence 22 4568899999999999999999999999999853
No 37
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=5.4e-37 Score=326.05 Aligned_cols=389 Identities=15% Similarity=0.104 Sum_probs=274.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|++||||+|.|.....++.++++.|++++++..+ .+.....+++..+.+ +..|.+.|+++|+++++|+|+|
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~--~Npg~~~~a~~~~~~-------~~~d~e~l~~~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGH--ENPSIKKLSKKYLFY-------DEKDYDLIEDFALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CChhhhhcccceeec-------CCCCHHHHHHHHHHhCCCEEEE
Confidence 5789999999999999999999999887777432 222234455554443 4678999999999999999999
Q ss_pred CCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 009316 150 GYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 150 g~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp 228 (537)
+.+. +. ...+..+++.|++++||+.++++.++||..+|++|+++|||+|+.+ ..+.+.+++.+++.+++||+||||
T Consensus 72 ~~d~--~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~~~~~~e~~~~~~~~~~PvVVKP 148 (435)
T PRK06395 72 GPDP--VLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NACFSEKDAARDYITSMKDVAVKP 148 (435)
T ss_pred CCCh--HHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ceeCChHHHHHHHHhhCCCEEEEe
Confidence 8653 22 2445677888999999999999999999999999999999998653 345567788887888899999999
Q ss_pred cCCCCCcceEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeee-eee-e-----
Q 009316 229 TAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DCS-I----- 300 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~-~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r-~~s-~----- 300 (537)
..++||+||+++++. +++.++++.+.... . .+..++|||||+| .|++++++.|+. .+..++.. +.. .
T Consensus 149 ~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~G-~E~Svd~~~dg~-~~~~l~~~~d~~r~~~~d~ 223 (435)
T PRK06395 149 IGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMPIVQDYKRAYEGDH 223 (435)
T ss_pred CCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecCC-ceEEEEEEEcCC-eEEEecccceeeecccCCC
Confidence 999999999999643 34445554443321 1 1367999999999 899999999865 45444332 110 0
Q ss_pred ccccceeEEEc----CCCCCCHHHHHHHHHHHHHHHHHcC-----CcceeEEEEEEeCCCCeEEEEEeccCCCc-ccchh
Q 009316 301 QRRNQKLLEEA----PSPALTPELRKAMGDAAVAAAASIG-----YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTE 370 (537)
Q Consensus 301 ~~~~~k~~e~~----P~~~l~~~~~~~l~~~a~~~~~alg-----~~G~~~vEf~~~~~g~~~~lEiN~R~~g~-~~~~e 370 (537)
.........++ |.|.++++..+++.+.+.+++++|+ |+|+.++||+++++| +|+||+|+|++.. ....-
T Consensus 224 gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il 302 (435)
T PRK06395 224 GPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVL 302 (435)
T ss_pred CCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhh
Confidence 11111222333 4555899999999999999999999 568888999999888 9999999999753 33333
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEE-eeecc-CCCccC
Q 009316 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRM-DSHVY-PDYVVP 448 (537)
Q Consensus 371 ~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~-d~~~~-~G~~v~ 448 (537)
.....|+++..+.++.| +|.. ...... ..++.+-+.++..- ..|..|.|........+++.+ ...+. ....+.
T Consensus 303 ~~l~~d~~~~~~~~~~g-~l~~-~~~~~~-~~~~~~~l~~~gYp--~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (435)
T PRK06395 303 YLLKSDFVETLHQIYSG-NLNG-SIKFER-KATVLKYIVPPGYG--ENPSPGRIKIDKTIFDSNSDVYYASVSGTLNDVK 377 (435)
T ss_pred hhcccCHHHHHHHHhcC-CCCC-CceecC-CCEEEEEEecCCCC--CCCCCCceeccccccCCCCEEEEeeccccCCCeE
Confidence 44689999999999999 4432 111112 23443334433221 234456554221111234333 11111 001122
Q ss_pred CCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEee
Q 009316 449 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG 483 (537)
Q Consensus 449 ~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g 483 (537)
.. .++++.|++.|+|.++|.++++++++.++ .|
T Consensus 378 s~-ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~ 410 (435)
T PRK06395 378 TS-GSRSLAIIAKGDSIPEASEKVDSDLNAVH-GS 410 (435)
T ss_pred EC-CCcEEEEEEEcCCHHHHHHHHHHHHhccC-CC
Confidence 22 34699999999999999999999999998 54
No 38
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.2e-37 Score=359.22 Aligned_cols=364 Identities=20% Similarity=0.314 Sum_probs=285.0
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
..+||||+|.|++ ++.++++++++|+++++++++++..+.+...+|..+.. ..+.+.++++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~e--------p~~~e~vl~I 625 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFE--------PLTLEDVLNV 625 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEc--------cCCHHHHHHH
Confidence 4689999999874 56789999999999999998888888888889987752 3568999999
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHH
Q 009316 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 139 a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~ 218 (537)
++++++|+|+|++|... ...+++.+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.++++
T Consensus 626 ~~~e~~dgVI~~~g~~~-~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~--~~~~s~ee~~~~~~ 702 (1068)
T PRK12815 626 AEAENIKGVIVQFGGQT-AINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPG--LTATDEEEAFAFAK 702 (1068)
T ss_pred HhhcCCCEEEEecCcHH-HHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCe--EEeCCHHHHHHHHH
Confidence 99999999999876421 2357788899999999999999999999999999999999999999 78899999999999
Q ss_pred hcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeee
Q 009316 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298 (537)
Q Consensus 219 ~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~ 298 (537)
++|||+||||..+.||+||.+|++.+||.++++.+. ..+.++++|+||+| .|++++++.|+. .++..+..+.
T Consensus 703 ~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G-~E~~Vd~i~dg~-~v~i~~i~e~ 774 (1068)
T PRK12815 703 RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDG-KEYEVDAISDGE-DVTIPGIIEH 774 (1068)
T ss_pred hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecC-ceEEEEEEEcCC-ceEEeeEEEE
Confidence 999999999999999999999999999999998761 13578999999999 899999999865 4443333221
Q ss_pred eecc--ccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCC
Q 009316 299 SIQR--RNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 376 (537)
Q Consensus 299 s~~~--~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGid 376 (537)
.... +........|+..++++..+++.+++.++++++|+.|++++||+++++ ++|+||||||+++..++.+.++|+|
T Consensus 775 ~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~-~~yviEiNpR~s~t~~~~skatGv~ 853 (1068)
T PRK12815 775 IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAND-EIYVLEVNPRASRTVPFVSKATGVP 853 (1068)
T ss_pred eeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECC-cEEEEEEeCCCCccHHHHHHHHCCC
Confidence 1111 111123345665689999999999999999999999999999999865 4999999999999899999999999
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccE
Q 009316 377 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLG 456 (537)
Q Consensus 377 l~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig 456 (537)
++++.+++++|+++..... . ..+.|..+.+..- .|--+.-++. ...-.+.|...| .|
T Consensus 854 l~~~~~~~~lG~~l~~~~~----~--------------~~~~~~~~~~~vk-~p~f~f~~~~---~~~~~lg~~m~s-tG 910 (1068)
T PRK12815 854 LAKLATKVLLGKSLAELGY----P--------------NGLWPGSPFIHVK-MPVFSYLKYP---GVDNTLGPEMKS-TG 910 (1068)
T ss_pred HHHHHHHHHcCCChhhccc----c--------------cccCCCCCeEEEE-eccCChhHcc---cCCCccCCcceE-cc
Confidence 9999999999998742210 0 1122333333221 1111111110 011123444444 78
Q ss_pred EEEEEcCCHHHHHHHHHHhh
Q 009316 457 KLIVWAPTREKAIERMKRAL 476 (537)
Q Consensus 457 ~vi~~g~~~~ea~~~~~~al 476 (537)
-++..|.|.++|+.|+..+.
T Consensus 911 e~~~~~~~~~~a~~k~~~~~ 930 (1068)
T PRK12815 911 EVMGIDKDLEEALYKGYEAS 930 (1068)
T ss_pred eeEeccCCHHHHHHHHHHhc
Confidence 88899999999988887775
No 39
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=5.5e-37 Score=310.04 Aligned_cols=375 Identities=22% Similarity=0.308 Sum_probs=306.8
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
++|..++ ....+..+++++|+.|+.|+++.+++........+||..++. ....+.+..++++.++|+|+|.
T Consensus 6 i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~e--------P~~~E~v~~Ii~~E~~Dailp~ 77 (400)
T COG0458 6 IVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIE--------PITKEPVEKIIEKERPDAILPT 77 (400)
T ss_pred eeeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeee--------cCcHHHHHHHHHhcCcceeecc
Confidence 3455554 445678899999999999999998888888888999999976 3678899999999999999999
Q ss_pred CCcc-cccH--HHH--HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEE
Q 009316 151 YGFL-AENA--VFV--EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225 (537)
Q Consensus 151 ~g~l-sE~~--~~a--~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~Pvv 225 (537)
.|-. ..+. .+. ..+++.|++++|.++++++.+.||..++++|++.|+|+| . ....+.+++.++.+.+|||+|
T Consensus 78 ~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~--~~~~~~~e~~~~~~~ig~PvI 154 (400)
T COG0458 78 LGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-S--RIAHSVEEADEIADEIGYPVI 154 (400)
T ss_pred cCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-c--cccccHHHHhhhHhhcCCCEE
Confidence 7632 2221 111 235677999999999999999999999999999999999 4 578899999999999999999
Q ss_pred EeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeee--eeccc
Q 009316 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SIQRR 303 (537)
Q Consensus 226 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~--s~~~~ 303 (537)
|||..+.||.|..+++|.+||.+..+...... +..++++|++|.|++|+++.++.|.+++++.....+- ....+
T Consensus 155 VrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvh 230 (400)
T COG0458 155 VKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVH 230 (400)
T ss_pred EecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcccccccc
Confidence 99999999999999999999999988765543 3469999999999999999999999999887754332 23344
Q ss_pred cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC-CCeEEEEEeccCCCcccchhhhcCCCHHHHHH
Q 009316 304 NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPVTEMISSVDLIEEQI 382 (537)
Q Consensus 304 ~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~-g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i 382 (537)
....+..+|++.+++...+.++..+.++++.+|..|..+++|.++++ |++||||||||++++..+.+++||..+.+...
T Consensus 231 tgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaa 310 (400)
T COG0458 231 TGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAA 310 (400)
T ss_pred ccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHH
Confidence 55677789999999999999999999999999999999999999954 68999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEc
Q 009316 383 HVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWA 462 (537)
Q Consensus 383 ~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g 462 (537)
.+|.|..++....++...+++ .|.|+...+..- .|. +-++......+++.+.+++ .|-|++.|
T Consensus 311 kla~g~~l~Ei~n~it~~t~a------------~fePsldyvv~k-~pr---~~f~kf~~~~~~l~~~mks-~gevm~ig 373 (400)
T COG0458 311 KLAVGYTLDEIRNDITGRTPA------------SFEPSLDYVVTK-IPR---FDFEKFPGADRRLGTQMKS-VGEVMAIG 373 (400)
T ss_pred HhhcccCchhhcCcccccccc------------ccCCccceeeee-cCC---CCcccccccccceeeeeec-cceEEEec
Confidence 999999886555444444433 477886654432 121 1222333345566677777 89999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 009316 463 PTREKAIERMKRALND 478 (537)
Q Consensus 463 ~~~~ea~~~~~~al~~ 478 (537)
++++||++|+.+.|+.
T Consensus 374 r~f~eal~ka~~~l~~ 389 (400)
T COG0458 374 RTFEEALQKALRSLEI 389 (400)
T ss_pred chHHHHHHHHHHhhcc
Confidence 9999999999998864
No 40
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=5e-37 Score=358.70 Aligned_cols=305 Identities=20% Similarity=0.348 Sum_probs=257.0
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
..+||||+|+|.+ ++++++++|++|+++++++.+++..+....++|..+.. ..+.+.++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e--------~~~~e~v~~i 624 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFE--------PLTLEDVLEI 624 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeec--------CCCHHHHHHH
Confidence 4689999999884 47889999999999999988887777778889986642 3468999999
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHH
Q 009316 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 139 a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~ 218 (537)
++++++|+|++.+|-... ..++..+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.++++
T Consensus 625 ~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~--~~~~s~ee~~~~~~ 701 (1066)
T PRK05294 625 IEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPN--GTATSVEEALEVAE 701 (1066)
T ss_pred HHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCe--EEECCHHHHHHHHH
Confidence 999999999987663211 367788999999999999999999999999999999999999999 77899999999999
Q ss_pred hcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeee
Q 009316 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298 (537)
Q Consensus 219 ~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~ 298 (537)
++|||+||||..++||+||.+++|.+||.++++.+.... .+.++++|+||+|.+|++|+++.|+. .++.....+.
T Consensus 702 ~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s----~~~~vlIEefI~G~~E~sV~~v~dg~-~v~i~~i~e~ 776 (1066)
T PRK05294 702 EIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVS----PDHPVLIDKFLEGAIEVDVDAICDGE-DVLIGGIMEH 776 (1066)
T ss_pred hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhC----CCCcEEEEecCCCCEEEEEEEEecCC-eEEEeeeEEe
Confidence 999999999999999999999999999999998765432 35789999999996699999998765 3443322111
Q ss_pred --eeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCC
Q 009316 299 --SIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 376 (537)
Q Consensus 299 --s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGid 376 (537)
....+........|+..++++..+++.+++.+++++||+.|++++||+++++ ++|++|||||+++..++++.++|+|
T Consensus 777 i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~-~~yViEiNpR~s~t~~~~s~atGi~ 855 (1066)
T PRK05294 777 IEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDD-EVYVIEVNPRASRTVPFVSKATGVP 855 (1066)
T ss_pred eeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECC-eEEEEEEecCCCccHHHHHHHhCcc
Confidence 0111111223345665689999999999999999999999999999999854 5999999999998899999999999
Q ss_pred HHHHHHHHHcCCCCC
Q 009316 377 LIEEQIHVAMGGKLR 391 (537)
Q Consensus 377 l~~~~i~~a~G~~l~ 391 (537)
+.+..+++++|+++.
T Consensus 856 ~~~~~~~~~lG~~l~ 870 (1066)
T PRK05294 856 LAKIAARVMLGKKLA 870 (1066)
T ss_pred HHHHHHHHHcCCChh
Confidence 999999999999875
No 41
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-36 Score=302.43 Aligned_cols=365 Identities=21% Similarity=0.314 Sum_probs=301.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+++|.|+|+|..++.++.++++||++++++ +++++++..+++|..+.. .|.|.+++.+++.+ +|+|.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela~~--~DViT-- 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVL--DPDADAPAAQVADRVIVA-------AYDDPEALRELAAK--CDVIT-- 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEe--cCCCCCchhhcccceeec-------CCCCHHHHHHHHhh--CCEEE--
Confidence 478999999999999999999999999999 778888899999998875 48899999999965 99998
Q ss_pred CCccccc--HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 009316 151 YGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 151 ~g~lsE~--~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp 228 (537)
|+| || .+..+.++.. .++ -|++++++...||...|++|+++|+|+||+ ..+.+.+++.++++++|+|+|+|.
T Consensus 68 ~Ef--E~V~~~aL~~l~~~-~~v-~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~--~~v~~~~el~~~~~~~g~p~VlKt 141 (375)
T COG0026 68 YEF--ENVPAEALEKLAAS-VKV-FPSPDALRIAQDRLVEKQFLDKAGLPVAPF--QVVDSAEELDAAAADLGFPAVLKT 141 (375)
T ss_pred Eee--ccCCHHHHHHHHhh-cCc-CCCHHHHHHHhhHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCceEEEe
Confidence 555 66 5666666666 444 499999999999999999999999999999 889999999999999999999999
Q ss_pred cCCC-CCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeecccccee
Q 009316 229 TAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (537)
Q Consensus 229 ~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~ 307 (537)
..|| -|+|.+++++.+++......... ....++|+||+-.+|+||.+.++.+|++..+...+ .+++..-..
T Consensus 142 r~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~e-N~h~~gIl~ 213 (375)
T COG0026 142 RRGGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPVAE-NVHRNGILR 213 (375)
T ss_pred ccccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecccc-eeeecCEEE
Confidence 9888 89999999999998875554322 13449999999999999999999899988886543 356666666
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcC
Q 009316 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (537)
Q Consensus 308 ~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G 387 (537)
..++|+. ++++..++..+++.+++++|+|.|++.|||+++.+|++++-|+.||++.+..+|...+.++.++++||..+|
T Consensus 214 ~siaPa~-i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~g 292 (375)
T COG0026 214 TSIAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLG 292 (375)
T ss_pred EEEecCc-CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhC
Confidence 6788985 999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHH
Q 009316 388 GKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (537)
Q Consensus 388 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~e 467 (537)
.||+- ......++++.+...+.... ....+ -..|+.+ .++|...+..+ ...+|||-+.++|.++
T Consensus 293 lPLg~----~~~~~p~vMvNlLG~~~~~~------~~~~~--l~~p~~~--lH~YGK~e~R~--gRKmGHvn~~~~~~~~ 356 (375)
T COG0026 293 LPLGS----TTLLSPSVMVNLLGDDVPPD------DVKAV--LALPGAH--LHWYGKAEARP--GRKMGHVNVLGSDSDE 356 (375)
T ss_pred CCCCC----ccccCceEEEEecCCCCchh------hhHHH--HhCCCCE--EEEecCccCCC--CCeeeeEEeecCCHHH
Confidence 99864 34567788999887643211 11111 1234554 35665555555 5679999999999777
Q ss_pred HHHHHHHhhhcc
Q 009316 468 AIERMKRALNDT 479 (537)
Q Consensus 468 a~~~~~~al~~~ 479 (537)
+.++........
T Consensus 357 ~~~~~~~l~~~~ 368 (375)
T COG0026 357 LEQLAALLPAKQ 368 (375)
T ss_pred HHHHHHhhhhhh
Confidence 766555444333
No 42
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.6e-35 Score=317.18 Aligned_cols=390 Identities=17% Similarity=0.127 Sum_probs=272.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCchhh----ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVK----LADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~--Gi~~v~v~~~~d~~~~~~~----~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d 145 (537)
+||||+|.|.....++.++++. |++++++..+.++ .... ++|..+.+ +..|.+.++++|++.++|
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Np--g~~~~~~~~~~~~~~~-------~~~d~~~l~~~a~~~~id 71 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNP--GINSVVKATGGEYFIG-------NINSPEEVKKVAKEVNPD 71 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCCh--hheeecccccCceEec-------CCCCHHHHHHHHHHhCCC
Confidence 4899999999999999999998 9999988543332 2222 22444443 467899999999999999
Q ss_pred EEEeCCCcccccH---HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCC
Q 009316 146 MLHPGYGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF 222 (537)
Q Consensus 146 ~V~pg~g~lsE~~---~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~ 222 (537)
+|+|+. |.+ .+++.++++|++++||+++++++++||..+|++|+++|||+|+.+ ..+.+.+++.++++.. +
T Consensus 72 ~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~-~~~~~~~ea~~~~~~~-~ 145 (486)
T PRK05784 72 LVVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY-KVFYDVEEAAKFIEYG-G 145 (486)
T ss_pred EEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc-eEeCCHHHHHHHHhhc-C
Confidence 999976 554 566889999999999999999999999999999999999997432 5678999999888665 6
Q ss_pred cEEEeecCCCCCcceEEeCCHHH-----HHHHHHHHHHHH---HHhcC--CCcEEEEecccCCcEEEEEEEEeCCCCEEE
Q 009316 223 PVMIKATAGGGGRGMRLAKEPDE-----FVKLLQQAKSEA---AAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (537)
Q Consensus 223 PvvvKp~~g~gg~Gv~~v~~~~e-----l~~~~~~~~~~~---~~~~g--~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~ 292 (537)
|+||||..++||+||++|++.++ +.+++..+.... ...|+ +..++|||||+| .|++|+++.|++ .++.
T Consensus 146 PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~ 223 (486)
T PRK05784 146 SVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYTLQVLTDGE-TVIP 223 (486)
T ss_pred CEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEEEEEEECCC-eEEE
Confidence 99999999999999999999873 445553332221 13344 368999999999 899999998765 4443
Q ss_pred Ee-eeeeee-cc-----ccceeEEEcC----CCCCCHHHHHHHHHHHHHHHHHcC------CcceeEEEEEEe-CCCCeE
Q 009316 293 FG-ERDCSI-QR-----RNQKLLEEAP----SPALTPELRKAMGDAAVAAAASIG------YIGVGTVEFLLD-ERGSFY 354 (537)
Q Consensus 293 ~~-~r~~s~-~~-----~~~k~~e~~P----~~~l~~~~~~~l~~~a~~~~~alg------~~G~~~vEf~~~-~~g~~~ 354 (537)
+. .++... .. ........+| .|.++++..+++.+++...+++++ |.|+.|+||+++ ++| ++
T Consensus 224 l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~ 302 (486)
T PRK05784 224 LPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PT 302 (486)
T ss_pred eeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cE
Confidence 32 222111 10 1112333466 666788887777777777666553 359999999999 888 99
Q ss_pred EEEEeccCCCc--ccchhhhcCCCHHHHHHHHHcCCCCCCCccccccc-eeEEEEEEeeCCCCCC-CCCCCceEEEEecC
Q 009316 355 FMEMNTRIQVE--HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQ-GHSIECRINAEDPFKN-FRPGPGIITAYLPA 430 (537)
Q Consensus 355 ~lEiN~R~~g~--~~~~e~~tGidl~~~~i~~a~G~~l~~~~~~~~~~-g~ai~~ri~ae~p~~~-f~p~~G~i~~~~~~ 430 (537)
+||+|+|+++. ..+... ++.|+++.+++++.|+--.. ++.++ ..++ |.+.+...+.. +.|..|......+.
T Consensus 303 vIE~n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~l~~~---~~~~~~~~~~-~vv~as~gYp~~~~~~~g~~i~~~~~ 377 (486)
T PRK05784 303 VIEYYSRFGDPEASNIIPR-IESDFGELFELAATGKLSKA---KIKFNEEPSV-VKAIAPLGYPLSRDLASGRRIVVDLD 377 (486)
T ss_pred EEEEecccCCchHHHHHHh-ccCCHHHHHHHHHcCCCCCC---CeeecCCceE-EEEECCCCCCCcccCCCCCEEECCcc
Confidence 99999999753 223444 56699999999999973211 23333 3344 44444332111 11445544333211
Q ss_pred --CCCeEEE-eeecc-CCCccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcc-eEeeec
Q 009316 431 --GGPFVRM-DSHVY-PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDT-IITGVP 485 (537)
Q Consensus 431 --~~~~vr~-d~~~~-~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~-~i~g~~ 485 (537)
..+++.+ ..++. .+..+-+. ..++..|++.|+|.++|.++++++++.+ .++|..
T Consensus 378 ~~~~~~~~v~~ag~~~~~~~~~t~-ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~~ 436 (486)
T PRK05784 378 KIKEEGCLVFFGSVELEGGQLITK-GSRALEIVAIGKDFEEAYEKLERCISYVSSDTKLI 436 (486)
T ss_pred ccccCCCEEEECCceeeCCEEEEc-CCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCCC
Confidence 1123222 11111 12222222 3468899999999999999999999999 888754
No 43
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=312.51 Aligned_cols=293 Identities=19% Similarity=0.244 Sum_probs=237.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcC--CcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~G--i~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
|+||||+|.|... .++++++++| +++++++. ++.++....+|+.+.++. .++-...+.++++++++++|+|+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~--~~~~~~~~~~d~~~~~p~---~~~~~~~~~l~~~~~~~~id~ii 74 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADI--SELAPALYFADKFYVVPK---VTDPNYIDRLLDICKKEKIDLLI 74 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECC--CCcchhhHhccCcEecCC---CCChhHHHHHHHHHHHhCCCEEE
Confidence 5799999988766 8999999995 99999854 456677788998887632 12233578999999999999999
Q ss_pred eCCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHH--HHHhcCCcEE
Q 009316 149 PGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK--LADELGFPVM 225 (537)
Q Consensus 149 pg~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~--~~~~ig~Pvv 225 (537)
|+.+...+. +..++.++..|+.+++|++++++.+.||..++++|+++|+|+|++ ..+.+.+++.+ +.++++||+|
T Consensus 75 ~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~~~P~v 152 (326)
T PRK12767 75 PLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKS--YLPESLEDFKAALAKGELQFPLF 152 (326)
T ss_pred ECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCE--EcccCHHHHHhhhhcccCCCCEE
Confidence 987532111 234566777899989999999999999999999999999999998 66788888877 5678999999
Q ss_pred EeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccc
Q 009316 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ 305 (537)
Q Consensus 226 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~ 305 (537)
+||..|+||+|++++++.+|+.++++.. ..+++|+||+| +|+++.++.+.+|+++.+..++........
T Consensus 153 iKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~~~~~~~g~ 221 (326)
T PRK12767 153 VKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKRIEVRAGE 221 (326)
T ss_pred EEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEeeeeeecCCc
Confidence 9999999999999999999999888642 48999999999 999999999877888877655432111111
Q ss_pred eeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHH
Q 009316 306 KLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 385 (537)
Q Consensus 306 k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a 385 (537)
...... .. .+++.+.+.++++++|+.|++++||++++ |++||+|||||++++.++. ..+|+|+.+++++.+
T Consensus 222 ~~~~~~----~~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~~~~-~~~G~n~~~~~~~~~ 292 (326)
T PRK12767 222 TSKGVT----VK---DPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGYPLS-YMAGANEPDWIIRNL 292 (326)
T ss_pred eeEEEE----cC---CHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcchhh-HhhCCCHHHHHHHHH
Confidence 111111 11 25788999999999999999999999997 6699999999999887654 468999999999999
Q ss_pred cCCCCC
Q 009316 386 MGGKLR 391 (537)
Q Consensus 386 ~G~~l~ 391 (537)
+|+++.
T Consensus 293 ~g~~~~ 298 (326)
T PRK12767 293 LGGENE 298 (326)
T ss_pred cCCCCC
Confidence 999875
No 44
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3.4e-36 Score=315.52 Aligned_cols=334 Identities=16% Similarity=0.189 Sum_probs=244.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCC
Q 009316 128 SYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL 207 (537)
Q Consensus 128 sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v 207 (537)
++.|.+.++++|++.++|+|+++.+... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++ ..+
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~--~~~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADY--KEV 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCE--EEE
Confidence 4789999999999999999998875311 1356788999999999999999999999999999999999999998 678
Q ss_pred CCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCC
Q 009316 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (537)
Q Consensus 208 ~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~ 287 (537)
.+.+++.++++++|||+||||..++||+||++++|.+|+.++++.+.... .++.++||+||+| +|+++.++.+++
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence 89999999999999999999999999999999999999999998865311 1358999999999 899999998855
Q ss_pred CCEEEEe--eeeee------eccccceeEEEcCCCCCCHHHHHHH-HHHHHHHHHHc---CC--cceeEEEEEEeCCCCe
Q 009316 288 GNVVHFG--ERDCS------IQRRNQKLLEEAPSPALTPELRKAM-GDAAVAAAASI---GY--IGVGTVEFLLDERGSF 353 (537)
Q Consensus 288 G~vv~~~--~r~~s------~~~~~~k~~e~~P~~~l~~~~~~~l-~~~a~~~~~al---g~--~G~~~vEf~~~~~g~~ 353 (537)
.++.+. .++.. ...........+|++.++++..+++ .+++.+++++| |+ .|+.++||+++++| +
T Consensus 164 -~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~ 241 (379)
T PRK13790 164 -LAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-P 241 (379)
T ss_pred -EEEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-e
Confidence 233221 11100 0001122334567776787766554 45555555555 54 59999999999877 9
Q ss_pred EEEEEeccCCCc-ccchhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEE----eeCCCCCCCCCCCceEEEEe
Q 009316 354 YFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRI----NAEDPFKNFRPGPGIITAYL 428 (537)
Q Consensus 354 ~~lEiN~R~~g~-~~~~e~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri----~ae~p~~~f~p~~G~i~~~~ 428 (537)
|++|+|+|+++. ..++...+|+|+++.+++.+.|.++.+...+ ..++.+.+ |+.++.++ +.|..+.
T Consensus 242 ~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~~~----~~~~~v~~~s~gyp~~~~~~-----~~i~~~~ 312 (379)
T PRK13790 242 KVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKN----ESIVGVMLASKGYPDAYEKG-----HKVSGFD 312 (379)
T ss_pred EEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeEcC----CCEEEEEEccCCCCCCCCCC-----CeeeecC
Confidence 999999999763 2344445899999999999999876544332 22333333 33222211 2333331
Q ss_pred cCCCCeEEEeeecc--CCCccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeeec
Q 009316 429 PAGGPFVRMDSHVY--PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (537)
Q Consensus 429 ~~~~~~vr~d~~~~--~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~ 485 (537)
. ++..+...+. .|.-++. ..++..|++.|+|.+||.++++++++.+.++|..
T Consensus 313 -~--~~~~~~~~~~~~~~~~~~~--ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~ 366 (379)
T PRK13790 313 -L--NENYFVSGLKKQGDTFVTS--GGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLF 366 (379)
T ss_pred -C--CCeEEECCccccCCeEEEC--CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCE
Confidence 1 1111112211 2222222 3568999999999999999999999999999843
No 45
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.4e-35 Score=281.63 Aligned_cols=380 Identities=18% Similarity=0.215 Sum_probs=296.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
-+|||.+|.||.+..++.+|+++|.+|++| |...+++..+.|+..+.++ .+|.++|....++.++|.|+|-
T Consensus 12 a~kvmLLGSGELGKEvaIe~QRLG~eViAV--DrY~~APAmqVAhrs~Vi~-------MlD~~al~avv~rekPd~IVpE 82 (394)
T COG0027 12 ATKVMLLGSGELGKEVAIEAQRLGVEVIAV--DRYANAPAMQVAHRSYVID-------MLDGDALRAVVEREKPDYIVPE 82 (394)
T ss_pred CeEEEEecCCccchHHHHHHHhcCCEEEEe--cCcCCChhhhhhhheeeee-------ccCHHHHHHHHHhhCCCeeeeh
Confidence 478999999999999999999999999999 4556677788899888874 8999999999999999999985
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l-~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
.+. -+.+....+|+.|+.++ |+..+.+++.|+...|+++ +++|+|+.+| ....+.+++.+.++++|||+++||.
T Consensus 83 iEA--I~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y--~fa~s~~e~~~a~~~iGfPcvvKPv 157 (394)
T COG0027 83 IEA--IATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKY--RFADSLEELRAAVEKIGFPCVVKPV 157 (394)
T ss_pred hhh--hhHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccc--cccccHHHHHHHHHHcCCCeecccc
Confidence 422 12345567889999987 9999999999999999988 4699999999 7899999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEE
Q 009316 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e 309 (537)
.+++|+|..++++++++..+|+.+.+.++. +++++++|+||+-..|+++-.+..-+|+-. +..-.-..|.+..+...
T Consensus 158 MSSSGkGqsvv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~-Fc~PIGHrq~dgdY~ES 234 (394)
T COG0027 158 MSSSGKGQSVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFDFEITLLTVRAVDGTGS-FCAPIGHRQEDGDYRES 234 (394)
T ss_pred cccCCCCceeecCHHHHHHHHHHHHhcCCC--CCCcEEEEEEecceEEEEEEEEEEecCCCC-cCCCcccccCCCChhcc
Confidence 999999999999999999999998865432 467999999999766666666653333321 21111123445555555
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCC
Q 009316 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~ 389 (537)
..|.. +++...++...+|.++.++||-.|++.||+++..|. +||-|+.||++.+.-+|-..-+++-+++++|..+|.|
T Consensus 235 WQP~~-mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDe-V~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLP 312 (394)
T COG0027 235 WQPQE-MSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDE-VIFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLP 312 (394)
T ss_pred cCccc-cCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCE-EEEeecCCCCCCCceEEEEeccchHHHHHHHHHhCCC
Confidence 66776 999999999999999999999999999999999765 9999999999888777777779999999999999998
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEE-EEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHH
Q 009316 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIIT-AYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 468 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~-~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea 468 (537)
++. ++.-+.+...-|+++--. ..|....+. .+..|. -.||+ .-.+ .+ +-..++|-.+++++|.++|
T Consensus 313 i~~----i~~~~P~AS~vI~~~~~~--~~~~f~~l~~AL~~p~-t~vRl--FGKP--~~--~~~RRmGVALA~a~~Ve~A 379 (394)
T COG0027 313 IPE----IRQISPAASAVILAQETS--QAPTFDGLAEALGVPD-TQVRL--FGKP--EA--DGGRRLGVALATAESVEEA 379 (394)
T ss_pred ccc----eeeecccccceeeccccc--cCCchhhHHHHhcCCC-ceEEE--ecCC--cc--cCCceeeEEEecCccHHHH
Confidence 852 233344444455553221 222222222 222221 12332 1111 11 1134699999999999999
Q ss_pred HHHHHHhhhcceEe
Q 009316 469 IERMKRALNDTIIT 482 (537)
Q Consensus 469 ~~~~~~al~~~~i~ 482 (537)
+++++++.+.+.|.
T Consensus 380 re~A~~aa~~i~v~ 393 (394)
T COG0027 380 RERARKAASAIEVK 393 (394)
T ss_pred HHHHHHHHhheecC
Confidence 99999999998875
No 46
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.3e-32 Score=279.36 Aligned_cols=273 Identities=22% Similarity=0.290 Sum_probs=210.3
Q ss_pred CCEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009316 71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~~iLI~~~g~i---------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~ 141 (537)
.+||.|+-+|.. +..+++++++.|++++.++.+.. .++....+
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~----------------------------~~~~~l~~ 54 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK----------------------------ELVAKLLE 54 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch----------------------------hHHHHhhc
Confidence 346776665543 78899999999999988842110 01112223
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc
Q 009316 142 RGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220 (537)
Q Consensus 142 ~~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i 220 (537)
.++|.++++ +|...|+..++..++.+|++++|++++++..+.||..+|++|+++|||+|++ ..+.+.. ...+.+
T Consensus 55 ~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~--~~~~~~~---~~~~~~ 129 (296)
T PRK14569 55 LKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMA--KFLTDKL---VAEDEI 129 (296)
T ss_pred cCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCe--EEEchhh---hhHhhc
Confidence 479998887 4667799999999999999999999999999999999999999999999997 3444321 235678
Q ss_pred CCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeee-e-e
Q 009316 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-D-C 298 (537)
Q Consensus 221 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r-~-~ 298 (537)
+||+||||..|++|.|+.+|++.+||.++++.+.. .+.++||+||+| +|++|.++.++....+.+... + .
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~~~~~~~ 201 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-KEITVAIVNDEVYSSVWIEPQNEFY 201 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-EEEEEEEECCcCcceEEEecCCCcC
Confidence 99999999999999999999999999999987632 257999999999 999999986543222221111 0 0
Q ss_pred ee-ccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCc----ccchhhhc
Q 009316 299 SI-QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMIS 373 (537)
Q Consensus 299 s~-~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~----~~~~e~~t 373 (537)
.. .....+.....|+. ++++..+++.+.+.+++++||+.|++++||+++++|++||+|||||++.. .|......
T Consensus 202 ~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~ 280 (296)
T PRK14569 202 DYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAE 280 (296)
T ss_pred ChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHHc
Confidence 01 11123344456776 88889999999999999999999999999999988899999999999754 34445568
Q ss_pred CCCHHHHHHHHH
Q 009316 374 SVDLIEEQIHVA 385 (537)
Q Consensus 374 Gidl~~~~i~~a 385 (537)
|+|+-++..++.
T Consensus 281 G~~~~~li~~ii 292 (296)
T PRK14569 281 GVDFDSFVKRII 292 (296)
T ss_pred CCCHHHHHHHHH
Confidence 999888766554
No 47
>PRK06524 biotin carboxylase-like protein; Validated
Probab=100.00 E-value=1.3e-32 Score=289.23 Aligned_cols=252 Identities=19% Similarity=0.261 Sum_probs=204.2
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHH
Q 009316 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~ 213 (537)
++++..+..+..... -|++|+..++.+++.+|++++||+.+++..+.||..+|++++++|||+|++......+.+++
T Consensus 95 ~~~~~~~~~~~~~~~---~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel 171 (493)
T PRK06524 95 ETLEFIKRRGPGGKA---CFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDEL 171 (493)
T ss_pred HHHHHHHhhCCCCce---EEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHH
Confidence 455556655543222 18999999999999999999999999999999999999999999999999943224677777
Q ss_pred HHHHHh--cCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEE
Q 009316 214 VKLADE--LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV 291 (537)
Q Consensus 214 ~~~~~~--ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv 291 (537)
.+.++. +|||+||||..|++|+|+.+|++.+|+..+++.+ +++..++||+||.| +|++|+++.+.+|.++
T Consensus 172 ~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~-------~~~~~viVEe~I~G-rEitVev~vd~dG~Vv 243 (493)
T PRK06524 172 SALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGI-------VGQPEIKVMKRIRN-VEVCIEACVTRHGTVI 243 (493)
T ss_pred HHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHh-------cCCCCEEEEeccCc-EEEEEEEEEeCCCCEE
Confidence 766665 9999999999999999999999999999877654 33478999999998 9999999998888776
Q ss_pred EEe------eeeeeeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceeEEEEEEeC-CCCeEEEEEecc
Q 009316 292 HFG------ERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDE-RGSFYFMEMNTR 361 (537)
Q Consensus 292 ~~~------~r~~s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~al---g~~G~~~vEf~~~~-~g~~~~lEiN~R 361 (537)
... .++....+........+|+. +++++.+++.+.|.++.++| ||.|+++|||+++. +|++||+|||||
T Consensus 244 ~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINPR 322 (493)
T PRK06524 244 GPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNPR 322 (493)
T ss_pred eccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeCC
Confidence 432 11222122222223567886 99999999999999999998 89999999999994 588999999999
Q ss_pred CCCcccchhhhc----CCCHHHHHHHHHcCCCCCCCcccc
Q 009316 362 IQVEHPVTEMIS----SVDLIEEQIHVAMGGKLRYKQEDI 397 (537)
Q Consensus 362 ~~g~~~~~e~~t----Gidl~~~~i~~a~G~~l~~~~~~~ 397 (537)
++|+++++++++ +.+++..+++..+|.|..+..+.+
T Consensus 323 ~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~~~~~~ 362 (493)
T PRK06524 323 LSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELDIEEI 362 (493)
T ss_pred cccccccchhhhccCCChhHHHHHHHHHhCCCceecHHHH
Confidence 999999988744 567777888899999987655444
No 48
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=9.8e-33 Score=284.90 Aligned_cols=299 Identities=20% Similarity=0.250 Sum_probs=220.8
Q ss_pred CCCEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHH
Q 009316 70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI 140 (537)
Q Consensus 70 ~~~~iLI~~~g~i---------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~ 140 (537)
|.+||.|+-+|.. |..+++++++.||+++.++-+.+-.-.........+.- +.....++. +....+
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~ 76 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELAD-DDNDKEDLS----LLILPS 76 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhccc-ccccccccc----hhcccc
Confidence 4567887776653 78899999999999999975554110000000000000 000000110 111111
Q ss_pred Hc--CCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHH----H
Q 009316 141 SR--GCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE----A 213 (537)
Q Consensus 141 ~~--~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~----~ 213 (537)
.. ++|+|+|. +|...|+..++..++.+|++++|++..+...+.||..+|++|+++|||+|++ ..+.+.++ +
T Consensus 77 ~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~--~~~~~~~~~~~~~ 154 (333)
T PRK01966 77 GGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPY--VVLTRGDWEEASL 154 (333)
T ss_pred ccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCE--EEEeccccchhhH
Confidence 22 68999999 7888899999999999999999999999999999999999999999999998 44443332 3
Q ss_pred HHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEE
Q 009316 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~ 293 (537)
.++.+.++||+||||..|++|.||.+|++.+|+.++++.+.+. +..++||+||+| +|++|.++.+ ++.+...
T Consensus 155 ~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~ 226 (333)
T PRK01966 155 AEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN-DPKASVP 226 (333)
T ss_pred HHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC-CCeEccc
Confidence 5566789999999999999999999999999999999887543 478999999999 9999999986 4444444
Q ss_pred eeeeee--eccccce-----eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCc-
Q 009316 294 GERDCS--IQRRNQK-----LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE- 365 (537)
Q Consensus 294 ~~r~~s--~~~~~~k-----~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~- 365 (537)
++..+. +.....| .....|+. ++++..+++.+.+.++.++||+.|++++||+++++|++||+|||||++..
T Consensus 227 ~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~ 305 (333)
T PRK01966 227 GEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFTP 305 (333)
T ss_pred EEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCCc
Confidence 443321 1111111 23456775 89999999999999999999999999999999988999999999999765
Q ss_pred ---ccchhhhcCCCHHHHHHHH
Q 009316 366 ---HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 366 ---~~~~e~~tGidl~~~~i~~ 384 (537)
.|......|+|+.+..-++
T Consensus 306 ~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 306 ISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred ccHHHHHHHHcCCCHHHHHHHH
Confidence 2334456899887766544
No 49
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-31 Score=268.40 Aligned_cols=385 Identities=20% Similarity=0.248 Sum_probs=277.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCC-CCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSY-LLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy-~~~~~i~~~a~~~~~d~V~pg 150 (537)
+||||+|.|-.-..|+.++.+.+....++....++.... +..+++ . +. .+.+.|+++|++.++|.++.|
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~-----~~~~~~--~---~~~~~~~~lv~fA~~~~idl~vVG 70 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL-----EAYLVN--I---EIDTDHEALVAFAKEKNVDLVVVG 70 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccch-----hhhhcc--C---ccccCHHHHHHHHHHcCCCEEEEC
Confidence 589999999888889999988775554444344333211 222222 1 12 679999999999999999988
Q ss_pred CCcccccH---HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 009316 151 YGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 151 ~g~lsE~~---~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvK 227 (537)
. |.+ -+.+.+++.||+.+||+.++.++-.+|..+|++|+++|||++.| ..+++.+++.+++++.|.|+|||
T Consensus 71 P----E~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~f~~~e~a~ayi~~~g~piVVK 144 (428)
T COG0151 71 P----EAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EVFTDPEEAKAYIDEKGAPIVVK 144 (428)
T ss_pred C----cHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cccCCHHHHHHHHHHcCCCEEEe
Confidence 7 443 56789999999999999999999999999999999999999998 78889999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCC--CcEEEEecccCCcEEEEEEEEeCCCCEEEEee-eeee-----
Q 009316 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN--DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDCS----- 299 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~--~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~-r~~s----- 299 (537)
|..-.+|+||.++.+.++..++++.+... ..||+ ..++||+|++| .|++++++.|++ +++.+.. +|..
T Consensus 145 adGLaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p~aQDhKra~dg 220 (428)
T COG0151 145 ADGLAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMPTAQDHKRAYDG 220 (428)
T ss_pred cccccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEecccc-eEEEEEEEEcCC-eEEECccccccccccCC
Confidence 99999999999999999999988877653 34553 35999999999 999999999987 6666642 1111
Q ss_pred -eccccceeEEEcCCCCCCHHHHHHHH-HHHHHHHHHc---C--CcceeEEEEEEeCCCCeEEEEEeccCCCcccchh--
Q 009316 300 -IQRRNQKLLEEAPSPALTPELRKAMG-DAAVAAAASI---G--YIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE-- 370 (537)
Q Consensus 300 -~~~~~~k~~e~~P~~~l~~~~~~~l~-~~a~~~~~al---g--~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e-- 370 (537)
...+......++|+|.+++++.+++. ++....++.+ | |.|+.-..|+++++| +++||.|.|+ +.|-++
T Consensus 221 D~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-PkViEfN~RF--GDPEtq~v 297 (428)
T COG0151 221 DTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PKVIEFNARF--GDPETQVV 297 (428)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cEEEEEeccc--CChhHHHH
Confidence 11112234457899999988777666 4444444433 4 669999999999999 9999999999 344333
Q ss_pred -hhcCCCHHHHHHHHHcCCCCCCCccccccc-eeEEEEEEeeCCCCCCCCCCCceEEEEec-CCCCeEEE-eeec--cCC
Q 009316 371 -MISSVDLIEEQIHVAMGGKLRYKQEDIVLQ-GHSIECRINAEDPFKNFRPGPGIITAYLP-AGGPFVRM-DSHV--YPD 444 (537)
Q Consensus 371 -~~tGidl~~~~i~~a~G~~l~~~~~~~~~~-g~ai~~ri~ae~p~~~f~p~~G~i~~~~~-~~~~~vr~-d~~~--~~G 444 (537)
...--||++..+.++.|.--... ...++ +.++.+-+-++..-. .|..|......+ ....++.+ .-.+ ..+
T Consensus 298 L~~l~sdl~~~~~a~~~g~L~~~~--~~~~~~~a~v~vvlA~~GYP~--~~~kG~~I~~~~~~~~~~~~vf~Agv~~~~~ 373 (428)
T COG0151 298 LPLLESDLVELLLAAVDGKLDEVE--ILFWDKGAAVGVVLAAEGYPG--DPEKGDVITGDEEAEEEGAKVFHAGVKLDDG 373 (428)
T ss_pred HHhccccHHHHHHHHHhCCccccc--hhhccCCceEEEEEecCCCCC--CCCCCCEEecChhhcccCcEEEEeeEeccCC
Confidence 34678999999999999532111 01122 344433333322111 245564433321 11113322 2222 223
Q ss_pred C-ccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeeec
Q 009316 445 Y-VVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (537)
Q Consensus 445 ~-~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~ 485 (537)
. -++. .++.-.|+..|+|.++|.++++++++.+..+|..
T Consensus 374 ~~lvt~--GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~~ 413 (428)
T COG0151 374 GQLVTS--GGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLF 413 (428)
T ss_pred ceEEec--CCeEEEEEecCCCHHHHHHHHHHHHhhcCCCCce
Confidence 2 2332 4456678899999999999999999999998853
No 50
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=8.3e-32 Score=274.80 Aligned_cols=277 Identities=23% Similarity=0.341 Sum_probs=215.5
Q ss_pred CCCCEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009316 69 CRQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 69 ~~~~~iLI~~~g~i---------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a 139 (537)
+|.++|.|+-+|.. +..++++++++|+++++++.+.+ +++.+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------------------------~~~~~ 52 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------IAAQL 52 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------------------------hHHHh
Confidence 45567888775543 68899999999999999853221 22233
Q ss_pred HHcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHH
Q 009316 140 ISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 140 ~~~~~d~V~pg~-g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~ 218 (537)
+..++|+|++.+ |...|+..++..++..|++++|++..++..+.||..++++|+++|||+|++ ..+.+.+++.++++
T Consensus 53 ~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~~~~~~~~~~~~~ 130 (304)
T PRK01372 53 KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPW--IVLTREEDLLAAID 130 (304)
T ss_pred ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCE--EEEeCcchHHHHHh
Confidence 445799999874 445688888899999999999999999999999999999999999999999 67788888888889
Q ss_pred hcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeee-
Q 009316 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD- 297 (537)
Q Consensus 219 ~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~- 297 (537)
+++||+||||..|+||+|+.++++.+++.++++++.. + +..+++|+||+| +|+++.++.+....++......
T Consensus 131 ~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~G-~E~~v~vi~~~~~~~~~~~~~~~ 203 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIKG-RELTVAVLGGKALPVIEIVPAGE 203 (304)
T ss_pred hcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccCC-EEEEEEEECCCccceEEEEecCC
Confidence 9999999999999999999999999999998877632 1 478999999998 9999999876432222221100
Q ss_pred -eeecccc--ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCc----ccchh
Q 009316 298 -CSIQRRN--QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTE 370 (537)
Q Consensus 298 -~s~~~~~--~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~----~~~~e 370 (537)
+...... .......|+ .++++..+++.+.+.++++++|+.|++++||+++++|++||+|+|+|++.. .+...
T Consensus 204 ~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~~~~ 282 (304)
T PRK01372 204 FYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVPMAA 282 (304)
T ss_pred EEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHHHHHH
Confidence 0111111 112334565 388999999999999999999999999999999988999999999998654 22223
Q ss_pred hhcCCCHHHHHHHH
Q 009316 371 MISSVDLIEEQIHV 384 (537)
Q Consensus 371 ~~tGidl~~~~i~~ 384 (537)
...|+|+.+....+
T Consensus 283 ~~~g~~~~~~~~~i 296 (304)
T PRK01372 283 RAAGISFSELVDRI 296 (304)
T ss_pred HHcCCCHHHHHHHH
Confidence 34599877665544
No 51
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=100.00 E-value=1.4e-31 Score=271.00 Aligned_cols=294 Identities=22% Similarity=0.282 Sum_probs=236.8
Q ss_pred EEEcCcH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009316 75 LVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 75 LI~~~g~-ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~ 153 (537)
+..|+|- .+..+++.+|+. -.+.++.|+.++......+||+++..+ . +.++| ++.++++|+++++|+++|++.-
T Consensus 2 iwfn~~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~eP-~-~~~~y--v~~~l~~C~~~~Idv~~P~~~~ 76 (329)
T PF15632_consen 2 IWFNRGFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLEP-A-DGEEY--VDWCLDFCKEHGIDVFVPGRNR 76 (329)
T ss_pred EEecCCCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeecC-C-CHHHH--HHHHHHHHHHhCCeEEEcCccH
Confidence 3456544 477888999887 555666668888999999999999753 3 43444 8899999999999999999743
Q ss_pred ccccHHHHHHHHHCCCceeC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCc---EEEeec
Q 009316 154 LAENAVFVEMCREHGINFIG-PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP---VMIKAT 229 (537)
Q Consensus 154 lsE~~~~a~~~e~~Gl~~iG-p~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~P---vvvKp~ 229 (537)
. ..+...+.+++.|+.+.- ++.++++.+.||..+.+.|++.|||+|++ ..+++.+++..+.+++++| +.|||.
T Consensus 77 ~-~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~--~~v~t~~el~~a~~~l~~~~~~~CvKP~ 153 (329)
T PF15632_consen 77 E-LLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPY--WRVRTADELKAAYEELRFPGQPLCVKPA 153 (329)
T ss_pred H-HHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCE--EEeCCHHHHHHHHHhcCCCCceEEEecc
Confidence 1 124556778999999876 78999999999999999999999999999 7899999999999988877 999999
Q ss_pred CCCCCcceEEeC-CHHHHHHHHH---------HHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeee
Q 009316 230 AGGGGRGMRLAK-EPDEFVKLLQ---------QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299 (537)
Q Consensus 230 ~g~gg~Gv~~v~-~~~el~~~~~---------~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s 299 (537)
.|.||+|.++++ +.+++...++ .+...-..+-.-.+++|++|++| .||||+++.+. |+++....|...
T Consensus 154 ~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~ 231 (329)
T PF15632_consen 154 VGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL 231 (329)
T ss_pred cCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec
Confidence 999999999998 5566555543 11111111112468999999999 99999999985 899877666433
Q ss_pred eccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHH
Q 009316 300 IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIE 379 (537)
Q Consensus 300 ~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~ 379 (537)
-..|.+. ..+++.+.|.++++.+|+.|+++|+|++|.+|++++||||||++|+-.++.. +|+|+..
T Consensus 232 --G~~q~l~-----------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~s~~-aGvNlp~ 297 (329)
T PF15632_consen 232 --GRRQVLE-----------NDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGYSCA-AGVNLPY 297 (329)
T ss_pred --CceeEEE-----------ECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhhHhh-cCCChHH
Confidence 1222111 2357789999999999999999999999988999999999999999887764 7999999
Q ss_pred HHHHHHcCCCCCC
Q 009316 380 EQIHVAMGGKLRY 392 (537)
Q Consensus 380 ~~i~~a~G~~l~~ 392 (537)
+.+..++|++.+.
T Consensus 298 la~~~~lG~~~~~ 310 (329)
T PF15632_consen 298 LAVKLALGEPIPP 310 (329)
T ss_pred HHHHHHcCCCCCC
Confidence 9999999998753
No 52
>PRK06849 hypothetical protein; Provisional
Probab=100.00 E-value=5.3e-32 Score=285.60 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=211.6
Q ss_pred CCEEEEEcCcH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 71 QEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~~iLI~~~g~-ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
.++|||.|.+. +++.++|++++.|++|+++++.++..+.+.+.+|+.+.++ .+..+....+++|+++++++++|+|+|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p-~p~~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIP-SPRWDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeC-CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 58899999654 7999999999999999999887766667788899998774 233333334789999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc-CCcEEEee
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKA 228 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i-g~PvvvKp 228 (537)
+.+.....+...+.++ .+..+++|++++++.+.||..++++++++|||+|++ ..+.+.+++.++..+. +||+|+||
T Consensus 83 ~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t--~~v~~~~~l~~~~~~~~~~P~vlKP 159 (389)
T PRK06849 83 TCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKT--YLITDPEAIRNFMFKTPHTPYVLKP 159 (389)
T ss_pred CChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHhhcCCCCcEEEEe
Confidence 9763211112222222 356778999999999999999999999999999999 6788999998887776 99999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeE
Q 009316 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~ 308 (537)
..|+||.|+.++.+.+++..... ..+.++++||||+| .++++.++.. +|+++..............-.+
T Consensus 160 ~~~~~~~~v~~~~~~~~l~~~~~---------~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~~ 228 (389)
T PRK06849 160 IYSRFVRRVDLLPKEAALKELPI---------SKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAHSCYKPEYCAGSGAQI 228 (389)
T ss_pred CcccCCCeEEEecCHHHhccccc---------CCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEEEEeeccccCCCCcee
Confidence 99999999999988554332110 11346999999999 7888877764 5677665432110000000011
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchh
Q 009316 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 309 e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e 370 (537)
...|. ..++|.+.+.++++++||.|.+++||+++++|++|+||||||++++.++..
T Consensus 229 ~~~~~------~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 229 AFQPI------NHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred EeEEC------CcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEcC
Confidence 11111 235788999999999999999999999998899999999999998877765
No 53
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=3.4e-31 Score=271.58 Aligned_cols=274 Identities=22% Similarity=0.337 Sum_probs=205.3
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHH-H-HHHcCCCEEEeC-CCcccccHH
Q 009316 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS-A-AISRGCTMLHPG-YGFLAENAV 159 (537)
Q Consensus 83 a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~-~-a~~~~~d~V~pg-~g~lsE~~~ 159 (537)
+.+++++++++|+++++++...+... . +.+....+. . ....++|+|+|. +|...|+..
T Consensus 20 ~~~i~~al~~~g~~v~~i~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~ 80 (315)
T TIGR01205 20 AAAVLKALRDLGYDVYPVDIDKMGSW-----------T--------YKDLPQLILELGALLEGIDVVFPVLHGRYGEDGT 80 (315)
T ss_pred HHHHHHHHhhcCCEEEEEeecCCccc-----------c--------ccchHHHHhhccccCCCCCEEEEecCCCCCCCcH
Confidence 78999999999999999975443211 0 111112111 1 122568999997 455668888
Q ss_pred HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCC-CHH---HH--HHHHHhcCCcEEEeecCCCC
Q 009316 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ-STE---EA--VKLADELGFPVMIKATAGGG 233 (537)
Q Consensus 160 ~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~-~~~---~~--~~~~~~ig~PvvvKp~~g~g 233 (537)
++..++.+|++++|++++++..+.||..++++|+++|||+|++ ..+. +.+ ++ ..+.+.++||+||||..|++
T Consensus 81 ~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~ 158 (315)
T TIGR01205 81 IQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDY--IVLTQNRASADELECEQVAEPLGFPVIVKPAREGS 158 (315)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCE--EEEecccccchhhhHHHHHHhcCCCEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999998 4444 332 22 23446899999999999999
Q ss_pred CcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEE-Eeeeeeeecc---c-c-cee
Q 009316 234 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH-FGERDCSIQR---R-N-QKL 307 (537)
Q Consensus 234 g~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~-~~~r~~s~~~---~-~-~k~ 307 (537)
|+|+.+++|.+++.++++.+... +..+++|+||+| +|+++.+++++++..+. .......+.. . + ...
T Consensus 159 s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T TIGR01205 159 SVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG-RELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGST 231 (315)
T ss_pred ccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC-EEEEEEEECCCCccceEEecCCCCCeeCcccccCCCCe
Confidence 99999999999999998876532 368999999998 99999999854432222 1111110100 0 0 112
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcc----cchhhhcCCCHHHHHHH
Q 009316 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIH 383 (537)
Q Consensus 308 ~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~----~~~e~~tGidl~~~~i~ 383 (537)
....|+. ++++..++|.+.+.++++++|+.|++++||+++++|++||+|||||++... +..-...|+|..++...
T Consensus 232 ~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ 310 (315)
T TIGR01205 232 EYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVER 310 (315)
T ss_pred eEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHH
Confidence 2335664 899999999999999999999999999999999888899999999986542 22334579988887766
Q ss_pred HH
Q 009316 384 VA 385 (537)
Q Consensus 384 ~a 385 (537)
+.
T Consensus 311 ii 312 (315)
T TIGR01205 311 IL 312 (315)
T ss_pred HH
Confidence 54
No 54
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=2.7e-31 Score=275.26 Aligned_cols=292 Identities=22% Similarity=0.236 Sum_probs=213.4
Q ss_pred CCEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCE-----------EEEcCCCCCCCCCC
Q 009316 71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-----------SVCIGEAPSSQSYL 130 (537)
Q Consensus 71 ~~~iLI~~~g~i---------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~-----------~~~i~~~~~~~sy~ 130 (537)
.+||.|+-+|.. |..|++++++.||+++.++-+.+- .+. ..+. .+.+.+. .
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g--~~~-~~~~~~~~~~~~~~~~~~~~~~------~ 73 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSG--VWK-LCDGPCAEWENGSCRPAVLSPD------R 73 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCC--cEE-eCCccccccccccccceeeccc------c
Confidence 457887776653 788999999999999998754431 110 0000 0111100 0
Q ss_pred CHHHHHHH----HHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCc
Q 009316 131 LIPNVLSA----AISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG 205 (537)
Q Consensus 131 ~~~~i~~~----a~~~~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~ 205 (537)
+...+... .+..++|.|+|. +|...|+..+...++..|++++|+++.+...+.||..+|++++++|||+|++ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~--~ 151 (343)
T PRK14568 74 KVHGLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAF--W 151 (343)
T ss_pred ccccccccCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCE--E
Confidence 00000000 123469999999 7888899999999999999999999999999999999999999999999998 4
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEe
Q 009316 206 LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285 (537)
Q Consensus 206 ~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d 285 (537)
.+.+.++.. .++++||+||||+.+++|+|+.+|++.+||.++++.+.+. +..++||+||+| +|+++.++++
T Consensus 152 ~~~~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~sv~vl~~ 222 (343)
T PRK14568 152 TVTADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-SEVGCAVLGN 222 (343)
T ss_pred EEECCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-EEEEEEEEcC
Confidence 454444321 3578999999999999999999999999999999877543 478999999999 9999999976
Q ss_pred CCCCEEE-Eeeeee--eeccccce---------eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCe
Q 009316 286 KYGNVVH-FGERDC--SIQRRNQK---------LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSF 353 (537)
Q Consensus 286 ~~G~vv~-~~~r~~--s~~~~~~k---------~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~ 353 (537)
+.+..+. ..+... ...+.++| .....|+. ++++..+++.+.+.++++++|+.|++++||+++++|++
T Consensus 223 ~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~ 301 (343)
T PRK14568 223 GADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTV 301 (343)
T ss_pred CCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCE
Confidence 5422221 111000 11121111 12346775 89999999999999999999999999999999988999
Q ss_pred EEEEEeccCCCcc----cchhhhcCCCHHHHHHH
Q 009316 354 YFMEMNTRIQVEH----PVTEMISSVDLIEEQIH 383 (537)
Q Consensus 354 ~~lEiN~R~~g~~----~~~e~~tGidl~~~~i~ 383 (537)
||+|||++++... |..-...|+++.+..-+
T Consensus 302 ~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 302 VLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 9999999997652 22234578886655433
No 55
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=100.00 E-value=1.8e-33 Score=239.05 Aligned_cols=107 Identities=50% Similarity=0.879 Sum_probs=102.7
Q ss_pred EEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009316 405 ECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 405 ~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
|||||||||.++|.|++|+|+.+.+|+++|||+|++++.|+.|+++||||+||||+||.||++|+++|.+||+++.|.|+
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~Gv 80 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEGV 80 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEESS
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEECc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCcccccccc
Q 009316 485 PTTIEYHKLILDVEDFKNGKVDTAFIP 511 (537)
Q Consensus 485 ~tn~~~~~~~~~~~~f~~~~~~t~~~~ 511 (537)
+||++||++||.||+|++|+++|+|||
T Consensus 81 ~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 81 KTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred cCCHHHHHHHhCCcccccCCCeeeccC
Confidence 999999999999999999999999986
No 56
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.4e-30 Score=270.14 Aligned_cols=302 Identities=19% Similarity=0.227 Sum_probs=214.7
Q ss_pred CEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCC----CHHHH--H
Q 009316 72 EKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYL----LIPNV--L 136 (537)
Q Consensus 72 ~~iLI~~~g~i---------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~----~~~~i--~ 136 (537)
.||.|+-+|.. |..+++++++.||+++.++.+.|..-......+..+..+.......+. ....+ .
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP 81 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccccccccccccccccccc
Confidence 46777766654 788999999999999988755542110000001111000000000000 00000 0
Q ss_pred HHHHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCC------C
Q 009316 137 SAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ------S 209 (537)
Q Consensus 137 ~~a~~~~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~------~ 209 (537)
......++|.++++ +|...|+..+...++.+|++++|++..+...+.||..+|++|+++|||+|++. .+. +
T Consensus 82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~--~~~~~~~~~~ 159 (347)
T PRK14572 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFF--ELEKLKYLNS 159 (347)
T ss_pred ccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEEccccccC
Confidence 11122468998888 67777999999999999999999999999999999999999999999999983 332 3
Q ss_pred HHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCC-C
Q 009316 210 TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY-G 288 (537)
Q Consensus 210 ~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~-G 288 (537)
.+++.+..++++||+||||..|++|.||.+|++.+||..+++.+... +..++||+||+| +|++|.++.+.. |
T Consensus 160 ~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~~~~g 232 (347)
T PRK14572 160 PRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLERYRGG 232 (347)
T ss_pred hHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeCccCC
Confidence 44554556789999999999999999999999999999999887532 478999999999 999999997422 2
Q ss_pred --CEEEEeeeeeeecc-------cc--ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEE
Q 009316 289 --NVVHFGERDCSIQR-------RN--QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFME 357 (537)
Q Consensus 289 --~vv~~~~r~~s~~~-------~~--~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lE 357 (537)
.++.+...+..... .+ ......+|+. +++++.+++.+.+.+++++||+.|+.++||++++ |++|++|
T Consensus 233 ~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~~~~vlE 310 (347)
T PRK14572 233 KRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVD-GEPHILE 310 (347)
T ss_pred CCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEEC-CcEEEEe
Confidence 33334333221100 11 1223456776 8999999999999999999999999999999984 6799999
Q ss_pred EeccCCCc----ccchhhhcCCCHHHHHHHH
Q 009316 358 MNTRIQVE----HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 358 iN~R~~g~----~~~~e~~tGidl~~~~i~~ 384 (537)
||++++.. .|..-...|+++.++.-++
T Consensus 311 iNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 311 TNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred eeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 99999754 2333345788877765544
No 57
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.98 E-value=1.9e-30 Score=269.62 Aligned_cols=305 Identities=16% Similarity=0.193 Sum_probs=216.3
Q ss_pred CCEEEEEcCcHH---------HHHHHHHH-HHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCC------HHH
Q 009316 71 QEKILVANRGEI---------AVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL------IPN 134 (537)
Q Consensus 71 ~~~iLI~~~g~i---------a~~ii~aa-~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~------~~~ 134 (537)
.++|.|+-+|.. |..|++++ .+.+|+++.++-+.+... +. ..+...........+.... ...
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGI-WY-LLDSVPDPPKLIKRDVLPIVSLIPGCGI 79 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCe-EE-ecCccccccccccccccccccccccccc
Confidence 467887777664 78899998 678999998875544111 10 0100000000000000000 000
Q ss_pred HHHHHHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCc----CCCC
Q 009316 135 VLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG----LLQS 209 (537)
Q Consensus 135 i~~~a~~~~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~----~v~~ 209 (537)
+.. .+..++|+|+|. +|...|+..+..+++.+|++++|++..+...+.||..+|++|+++|||+||+... ...+
T Consensus 80 ~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 80 FVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred ccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccc
Confidence 110 122368999998 6778899999999999999999999999999999999999999999999997311 0123
Q ss_pred HHHHHH-HHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCC
Q 009316 210 TEEAVK-LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG 288 (537)
Q Consensus 210 ~~~~~~-~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G 288 (537)
.+++.+ +.+.+|||+||||+.+++|.|+.++++.+||.++++.+... +..++||+||+| +|++|.++++...
T Consensus 159 ~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G-rEi~v~Vlg~~~~ 231 (364)
T PRK14570 159 KEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA-REIECSVIGNEQI 231 (364)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-EEEEEEEECCCCc
Confidence 455443 34679999999999999999999999999999999987642 467999999998 9999999987554
Q ss_pred CEEEEeeeeee---ec---c-c----cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCeEEE
Q 009316 289 NVVHFGERDCS---IQ---R-R----NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFM 356 (537)
Q Consensus 289 ~vv~~~~r~~s---~~---~-~----~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-~g~~~~l 356 (537)
.+...++.... +. . + .+.....+|+. +++++.+++.+.|.++.++||++|++++||++++ +|++||+
T Consensus 232 ~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvl 310 (364)
T PRK14570 232 KIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLN 310 (364)
T ss_pred eEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEE
Confidence 44444432210 00 0 0 11123456776 9999999999999999999999999999999995 5889999
Q ss_pred EEeccCCCc----ccchhhhcCCCHHHH---HHHHHc
Q 009316 357 EMNTRIQVE----HPVTEMISSVDLIEE---QIHVAM 386 (537)
Q Consensus 357 EiN~R~~g~----~~~~e~~tGidl~~~---~i~~a~ 386 (537)
||||+++.. .|..-...|+++.++ +++.++
T Consensus 311 EiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~ 347 (364)
T PRK14570 311 EINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAF 347 (364)
T ss_pred EeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999765 222333478876554 444444
No 58
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.97 E-value=6e-32 Score=230.14 Aligned_cols=107 Identities=54% Similarity=0.891 Sum_probs=105.3
Q ss_pred EEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009316 405 ECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 405 ~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
|||||||||.++|.|++|+|+.+..|+++|||+|+++++|+.|+++||||+||||+||+||++|+++|.+||++++|+|+
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~Gv 80 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEGV 80 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCcccccccc
Q 009316 485 PTTIEYHKLILDVEDFKNGKVDTAFIP 511 (537)
Q Consensus 485 ~tn~~~~~~~~~~~~f~~~~~~t~~~~ 511 (537)
+||++||+.|+.+|+|++|+++|+||+
T Consensus 81 ~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 81 KTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred cCCHHHHHHHhcCHhhhcCcccccccC
Confidence 999999999999999999999999985
No 59
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=7.1e-29 Score=252.66 Aligned_cols=269 Identities=20% Similarity=0.304 Sum_probs=200.6
Q ss_pred EEEEEcCcHH---------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009316 73 KILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 73 ~iLI~~~g~i---------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~ 143 (537)
||.|+-+|.. +..++++++++|++++.++.+.+. ... +.+..+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~-------------------------~~~---~~~~~~ 53 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDF-------------------------LKK---VDQLKS 53 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchH-------------------------HHH---hhhccC
Confidence 4555555543 788999999999999998543210 001 111235
Q ss_pred CCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCC
Q 009316 144 CTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF 222 (537)
Q Consensus 144 ~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~ 222 (537)
+|+|++. .|...|+..++..++.+|++++|+++.++..+.||..++++++ .|||+|++ ..+.+.. ....++|
T Consensus 54 ~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~--~~~~~~~----~~~~l~~ 126 (299)
T PRK14571 54 FDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDF--VEIKEFM----KTSPLGY 126 (299)
T ss_pred CCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCE--EEEechh----hhhhcCC
Confidence 8999887 4555688889999999999999999999999999999999998 58999998 4444322 2356899
Q ss_pred cEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeecc
Q 009316 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR 302 (537)
Q Consensus 223 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~ 302 (537)
|+||||..|+||+||.+|+|.+||.++++++... +..++||+||+| +|++|.+++++.+ ...+...+.....
T Consensus 127 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E~sv~vl~~~~~-~~vl~~~e~~~~~ 198 (299)
T PRK14571 127 PCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIPG-REMTVSILETEKG-FEVLPILELRPKR 198 (299)
T ss_pred CEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEccccc-eEEEEEEEcCCCC-eeeeceEEEecCC
Confidence 9999999999999999999999999998765432 357999999999 9999999987543 2223222111111
Q ss_pred c-------c--ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcc----cch
Q 009316 303 R-------N--QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVT 369 (537)
Q Consensus 303 ~-------~--~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~----~~~ 369 (537)
+ + .......|+. ++++..++|.+.+.++++++|+.|++++||++++ |++||+|||++++... +..
T Consensus 199 ~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~-~~~~viEiN~~Pg~~~~s~~~~~ 276 (299)
T PRK14571 199 RFYDYVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFSD-GRFYFLEINTVPGLTELSDLPAS 276 (299)
T ss_pred CccccccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEC-CcEEEEEeeCCCCCCccCHHHHH
Confidence 0 0 0112235665 8999999999999999999999999999999984 6799999999997652 222
Q ss_pred hhhcCCCHHH---HHHHHHc
Q 009316 370 EMISSVDLIE---EQIHVAM 386 (537)
Q Consensus 370 e~~tGidl~~---~~i~~a~ 386 (537)
-...|+|+.+ ..++.++
T Consensus 277 ~~~~G~~~~~li~~ii~~a~ 296 (299)
T PRK14571 277 AKAGGIEFEELVDIIIKSAF 296 (299)
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 2357888776 4555443
No 60
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.97 E-value=3.1e-28 Score=278.63 Aligned_cols=297 Identities=18% Similarity=0.179 Sum_probs=215.8
Q ss_pred CCEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009316 71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~~iLI~~~g~i---------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~ 141 (537)
.+||.|+-+|.. |..+++++++.||+++.++-+.+- .+..................+. ..+.. ..
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g--~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~ 524 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQG--LWETVSSLETAIEEDSGKSVLS--SEIAQ--AL 524 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCC--eEEecccccccccccccccccc--hhhhh--cc
Confidence 457777776654 788999999999999988754431 1111100000000000001111 11111 11
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCC------CHH-HH
Q 009316 142 RGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ------STE-EA 213 (537)
Q Consensus 142 ~~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~------~~~-~~ 213 (537)
.++|.|+|. +|...|+..+...|+.+|++++|++..+...+.||..+|++++++|||+|++ ..+. +.+ .+
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~--~~~~~~~~~~~~~~~~ 602 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPY--QPLTLAGWKREPELCL 602 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCE--EEEechhcccChHHHH
Confidence 468999998 5778899999999999999999999999999999999999999999999998 3333 222 34
Q ss_pred HHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEE
Q 009316 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~ 293 (537)
.++.+++|||+||||..+++|.|+.+|++.+||.++++.+... +.+++||+||.+++|++|.+++++.+..+..
T Consensus 603 ~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~ 676 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVIA 676 (809)
T ss_pred HHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEec
Confidence 5567789999999999999999999999999999999877532 4789999998877999999999876533221
Q ss_pred --eeeeee-----eccccc----e-eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEecc
Q 009316 294 --GERDCS-----IQRRNQ----K-LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 361 (537)
Q Consensus 294 --~~r~~s-----~~~~~~----k-~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R 361 (537)
.++.+. .+..+. . .....|+. +++++.+++.+.|.++.++||+.|+++|||+++++|++||+|||||
T Consensus 677 ~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 677 GPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPI 755 (809)
T ss_pred cceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCC
Confidence 222221 111110 0 11224665 9999999999999999999999999999999998899999999999
Q ss_pred CCCcc----cchhhhcCCCHHHHHH
Q 009316 362 IQVEH----PVTEMISSVDLIEEQI 382 (537)
Q Consensus 362 ~~g~~----~~~e~~tGidl~~~~i 382 (537)
++... |..-...|++..+..-
T Consensus 756 PG~t~~s~~p~~~~~~G~~~~~li~ 780 (809)
T PRK14573 756 PGMTEASPFLTAFVRKGWTYEQIVH 780 (809)
T ss_pred CCCCcccHHHHHHHHcCCCHHHHHH
Confidence 98652 3333457887655443
No 61
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.96 E-value=3e-27 Score=230.18 Aligned_cols=349 Identities=21% Similarity=0.231 Sum_probs=245.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCC--CCCHHHHHHHHHHc--CCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQS--YLLIPNVLSAAISR--GCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~s--y~~~~~i~~~a~~~--~~d~ 146 (537)
+-|||++|-. .+.+..+|.++|++|..+.--.+.+.. ..++..++..+...-.. .+|.++|++++... .+|+
T Consensus 11 ~~kiLviGvn--tR~vveSA~klGf~V~sv~~y~~~Dl~--~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~ 86 (389)
T COG2232 11 SCKILVIGVN--TRPVVESASKLGFEVYSVQYYDPADLP--GDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDA 86 (389)
T ss_pred cceEEEEeec--chHhHHHHHhcCeEEEEeEeecccccc--cccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcce
Confidence 4579999754 678999999999999988543333332 45666666554433333 46788899988764 4778
Q ss_pred -EEeCCCcccccHHHHHHHHHCCCceeCCCHH-HHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcE
Q 009316 147 -LHPGYGFLAENAVFVEMCREHGINFIGPNPD-SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (537)
Q Consensus 147 -V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~-~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~Pv 224 (537)
++|+.||..++ .--..+....|++++ .+..+.||..+.+.+..+|+|.|+.. .. +. ...--+++
T Consensus 87 ~ii~~sg~e~l~-----~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--~~---e~----~~~gekt~ 152 (389)
T COG2232 87 PIIPFSGFEALR-----TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--KI---EP----LEEGEKTL 152 (389)
T ss_pred eeeecccccccc-----ccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--hh---hh----hhhcceee
Confidence 88888874333 112455677888888 99999999999999999999999762 11 11 12233689
Q ss_pred EEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeec---
Q 009316 225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ--- 301 (537)
Q Consensus 225 vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~--- 301 (537)
|+||+.|+||. +.++.-.++.. ..++++|+||+| +++++.++.++. .++.+...+.-+.
T Consensus 153 IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~-~a~~la~N~QiI~~~~ 214 (389)
T COG2232 153 ILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGS-DALTLAVNDQIIDGLR 214 (389)
T ss_pred EEeeccCCCce-eeecccccccC---------------CcceehhhhcCC-ceeEEEEEecCc-ceEEEEEeeeeecccc
Confidence 99999999996 33332222211 168999999999 999999999977 4444433221111
Q ss_pred ---cccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHH
Q 009316 302 ---RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLI 378 (537)
Q Consensus 302 ---~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~ 378 (537)
-.+.+...-+|.+. .+. +++.+.|..++..+|+.|...|||++++.| +|+||||||+||...-.|+++|+|++
T Consensus 215 ~~~~~f~Y~GNlTP~~~--~~~-ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~ 290 (389)
T COG2232 215 GEYSQFVYKGNLTPFPY--EEV-EEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLF 290 (389)
T ss_pred cccccceeccCcCCCcc--hhh-HHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHH
Confidence 11112233456542 222 788999999999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCCCCCCccEEE
Q 009316 379 EEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKL 458 (537)
Q Consensus 379 ~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~ig~v 458 (537)
++++++..|+-+ +.+.++++++..-+||. ..-+.+ .+ ...++| | -..+|..+.. -+| ++.|
T Consensus 291 ~lHi~af~G~Lp----Er~kpr~~a~krILyap--~~v~v~---~l------~~~~~~-D-iP~~Gtviek-geP-l~sv 351 (389)
T COG2232 291 RLHIQAFDGELP----ERPKPRGYACKRILYAP--RTVRVP---IL------KLSWTH-D-IPRPGTVIEK-GEP-LCSV 351 (389)
T ss_pred HHHHHHhcCcCc----CCCCcceeEEeEEEecc--ceeecc---cc------cccccc-c-CCCCCcccCC-CCc-eeee
Confidence 999999999843 45678899998888872 222211 01 011122 1 1234544433 244 8899
Q ss_pred EEEcCCHHHHHHHHHHhhhc
Q 009316 459 IVWAPTREKAIERMKRALND 478 (537)
Q Consensus 459 i~~g~~~~ea~~~~~~al~~ 478 (537)
|+.+.++++|...+.+.++.
T Consensus 352 iA~~nt~~~a~~~~er~~er 371 (389)
T COG2232 352 IASSNTRSGAESMAERLAER 371 (389)
T ss_pred eeccCCHHHHHHHHHHHHHH
Confidence 99999999999877776654
No 62
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.95 E-value=7.2e-26 Score=230.62 Aligned_cols=276 Identities=19% Similarity=0.193 Sum_probs=198.3
Q ss_pred EEEEEcCc---HHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 73 KILVANRG---EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 73 ~iLI~~~g---~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|++|+.|. ..+.+++++++++|++++.++........... .+..+ |.. ....++|+|++
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~-~~~~~----------~~~-------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA-ASSIH----------YKG-------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCC-cccEE----------ECC-------cccCCCCEEEE
Confidence 57777743 34789999999999999999532110000000 11111 110 01236899998
Q ss_pred CCCcc-ccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc-CCcEEE
Q 009316 150 GYGFL-AEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMI 226 (537)
Q Consensus 150 g~g~l-sE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i-g~Pvvv 226 (537)
..+.. ... ...+..++..| +++++++.++..+.||..++++|+++|||+|++ ..+.+.+++.++++++ +||+||
T Consensus 64 ~~~~~~~~~~~~~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t--~~~~~~~~~~~~~~~~~~~P~Vv 140 (300)
T PRK10446 64 RIGTAITFYGTAALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVT--GIAHSPDDTSDLIDMVGGAPLVV 140 (300)
T ss_pred cCCCchhhHHHHHHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHHhCCCCEEE
Confidence 64321 111 23467889999 456799999999999999999999999999998 5667888888888877 799999
Q ss_pred eecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccc---CCcEEEEEEEEeCCCCEEEEeeeeeee--c
Q 009316 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ---NPRHIEFQVLADKYGNVVHFGERDCSI--Q 301 (537)
Q Consensus 227 Kp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~---g~~ei~v~v~~d~~G~vv~~~~r~~s~--~ 301 (537)
||..|++|+||+++++.+++..+++.+... +..+++|+||+ | +++.|.+++ |+++....|..+. .
T Consensus 141 KP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g-~d~rv~vig---~~~~~~~~r~~~~~~~ 210 (300)
T PRK10446 141 KLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQG-CDIRCLVVG---DEVVAAIERRAKEGDF 210 (300)
T ss_pred EECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCC-ceEEEEEEC---CEEEEEEEEecCCCch
Confidence 999999999999999999998888765332 36799999994 5 899999874 3566655553321 1
Q ss_pred cccceeE-EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHH
Q 009316 302 RRNQKLL-EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEE 380 (537)
Q Consensus 302 ~~~~k~~-e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~ 380 (537)
+.+.... ...+.. ++ +++.+.|.++++++|+. +++|||+++++| +||+|||++++. ..++.++|+|+.+.
T Consensus 211 ~~n~~~g~~~~~~~-l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~--~~~~~~~g~~~~~~ 281 (300)
T PRK10446 211 RSNLHRGGAASVAS-IT----PQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGL--EGIEKTTGIDIAGK 281 (300)
T ss_pred hheeccCCeeccCC-CC----HHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCCh--hhhHHHHCcCHHHH
Confidence 1111111 112222 44 45779999999999996 899999999888 999999999843 45678899999999
Q ss_pred HHHHHcCC
Q 009316 381 QIHVAMGG 388 (537)
Q Consensus 381 ~i~~a~G~ 388 (537)
+++.....
T Consensus 282 ~~~~i~~~ 289 (300)
T PRK10446 282 MIRWIERH 289 (300)
T ss_pred HHHHHHHh
Confidence 98877544
No 63
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.95 E-value=1.5e-25 Score=225.11 Aligned_cols=264 Identities=23% Similarity=0.293 Sum_probs=191.2
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccH
Q 009316 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENA 158 (537)
Q Consensus 79 ~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~ 158 (537)
.+....+++++++++|+++..++.... .+.+.... .....+|+|++.........
T Consensus 9 ~~~~~~~l~~a~~~~g~~~~~~~~~~~-----------~~~~~~~~--------------~~~~~~d~v~~r~~~~~~~~ 63 (277)
T TIGR00768 9 IRLDEKMLKEAAEELGIDYKVVTPPAI-----------PLTFNEGP--------------RELAELDVVIVRIVSMFRGL 63 (277)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEhHHc-----------EEeccCCC--------------ccCCCCCEEEEechhHhhHH
Confidence 355677899999999999998853211 11111000 00234788887642112234
Q ss_pred HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceE
Q 009316 159 VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238 (537)
Q Consensus 159 ~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~ 238 (537)
.+++.++..|+++++ +++++..+.||..++++|+++|+|+|++ ..+.+.+++.++.++++||+|+||..|++|+|+.
T Consensus 64 ~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t--~~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~ 140 (277)
T TIGR00768 64 AVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRT--GLAGSPEEALKLIEEIGFPVVLKPVFGSWGRLVS 140 (277)
T ss_pred HHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCE--EEeCCHHHHHHHHHhcCCCEEEEECcCCCCCceE
Confidence 677888999999875 5899999999999999999999999998 6778999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCC--cEEEEEEEEeCCCCEEEEeeee--eeeccccceeEEEcCCC
Q 009316 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGERD--CSIQRRNQKLLEEAPSP 314 (537)
Q Consensus 239 ~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~--~ei~v~v~~d~~G~vv~~~~r~--~s~~~~~~k~~e~~P~~ 314 (537)
++++.+++.++++...... -....+++|+||++. .++++.++ .|+++....|. ..+......-....|..
T Consensus 141 ~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~---~~~~~~~~~r~~~~~~~~n~~~g~~~~~~~ 214 (277)
T TIGR00768 141 LARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVV---GDEVIAAIYRITSGHWRTNLARGGKAEPCP 214 (277)
T ss_pred EEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEE---CCEEEEEEEEcCCCchhhhhhcCCeeeecC
Confidence 9999999998877654321 012479999999973 35555443 23665554442 11111000011112322
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHH
Q 009316 315 ALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 315 ~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~ 384 (537)
++ +++.+.+.++++++|+ +.+.+||+++++|++||+|+|+|++ ....+..+|+|+.+++++.
T Consensus 215 -l~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~--~~~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 215 -LT----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPE--FKNSVKTTGVNIAGKLLDY 276 (277)
T ss_pred -CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcc--hhhhHHHHCCCHHHHHHhh
Confidence 34 4677899999999999 7889999999888899999999985 4456788999999998763
No 64
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.95 E-value=2.9e-26 Score=215.77 Aligned_cols=177 Identities=29% Similarity=0.499 Sum_probs=134.2
Q ss_pred HhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHh
Q 009316 181 IMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (537)
Q Consensus 181 ~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~ 260 (537)
++.||..++++++++|||+|++ ..+.+.+++.++.+.++||+||||..|+||+|++++++.+++.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~--~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKT--RIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----E--EEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 4789999999999999999998 789999999999999999999999999999999999999999999998876541
Q ss_pred cCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeecccc-----ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q 009316 261 FGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRN-----QKLLEEAPSPALTPELRKAMGDAAVAAAASI 335 (537)
Q Consensus 261 ~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~-----~k~~e~~P~~~l~~~~~~~l~~~a~~~~~al 335 (537)
.....+++|+||+| .++++.++.+ +|+++.+...+....... .......+ .+....+++.+.+.++++++
T Consensus 77 ~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 151 (184)
T PF13535_consen 77 LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVP---SEPPLPEELRDLARKLLRAL 151 (184)
T ss_dssp -HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecc---cccccHHHHHHHHHHHHHHc
Confidence 12468999999999 9999999988 778876665443332111 11112222 23344489999999999999
Q ss_pred CC-cceeEEEEEEeCCCCeEEEEEeccCCCcc
Q 009316 336 GY-IGVGTVEFLLDERGSFYFMEMNTRIQVEH 366 (537)
Q Consensus 336 g~-~G~~~vEf~~~~~g~~~~lEiN~R~~g~~ 366 (537)
|| .|++++||+++++|++||||||||++|.+
T Consensus 152 g~~~G~~~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 152 GYRNGFFHIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp T--SEEEEEEEEEETCCEEEEEEEESS--STT
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECccCCCCC
Confidence 99 69999999999889899999999998864
No 65
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.94 E-value=1.2e-24 Score=223.75 Aligned_cols=267 Identities=18% Similarity=0.268 Sum_probs=192.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC-CCchhhccCEEEEcCCCCCCCCC---CCHHHHHHHHHHcCCCEEE
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK-DALHVKLADESVCIGEAPSSQSY---LLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~-~~~~~~~ad~~~~i~~~~~~~sy---~~~~~i~~~a~~~~~d~V~ 148 (537)
+|..++ +..++.|++.|++.|++++++....+. .-....++|+.+.+. +| .|.+...++++. ++ .++
T Consensus 20 ~i~~~~-shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~------~~~di~~~~~~~~l~~~-~~-iiI 90 (358)
T PRK13278 20 TIATIG-SHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVD------DFSDILNEAVQEKLREM-NA-ILI 90 (358)
T ss_pred eEEEEe-cccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEc------chhhhcCHHHHHHHhhc-Cc-EEE
Confidence 455554 346899999999999999999876543 224466789988774 34 333444444443 33 255
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 009316 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp 228 (537)
|. |...........+ ++++++.| +.++++...||..++++|+++|||+|++ +.+.++ ++||+||||
T Consensus 91 p~-gs~v~y~~~d~l~-~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp 156 (358)
T PRK13278 91 PH-GSFVAYLGLENVE-KFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK----YESPED-------IDRPVIVKL 156 (358)
T ss_pred eC-CCcceeecHHHHH-HCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEe
Confidence 54 5544544444443 78888765 8999999999999999999999999986 344443 579999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeC-CCCEEEEe--eeeee---ecc
Q 009316 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG--ERDCS---IQR 302 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~-~G~vv~~~--~r~~s---~~~ 302 (537)
..|.||+|++++++.+|+.++++.+.+...... ...+++||||.| .|++++++... +|++-.++ .|-.+ ...
T Consensus 157 ~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~ 234 (358)
T PRK13278 157 PGAKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLV 234 (358)
T ss_pred CCCCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeeccccee
Confidence 999999999999999999999988754221111 478999999999 89999999752 34544333 33222 001
Q ss_pred c-----------c--ceeEEEcCCCCCCHHHHHHHHHHHHHHHHH----c--CCcceeEEEEEEeCCCCeEEEEEeccCC
Q 009316 303 R-----------N--QKLLEEAPSPALTPELRKAMGDAAVAAAAS----I--GYIGVGTVEFLLDERGSFYFMEMNTRIQ 363 (537)
Q Consensus 303 ~-----------~--~k~~e~~P~~~l~~~~~~~l~~~a~~~~~a----l--g~~G~~~vEf~~~~~g~~~~lEiN~R~~ 363 (537)
+ + .-.....|+. +.+.+.+++.+.+.+++++ + |..|++++|+++++++++|++|+|+|++
T Consensus 235 r~p~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~ 313 (358)
T PRK13278 235 RIPAKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIV 313 (358)
T ss_pred eccchhhhhcccCCceeEecceecc-chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCccc
Confidence 1 0 0112234554 7888889999999999888 4 5569999999999999999999999996
Q ss_pred Cc
Q 009316 364 VE 365 (537)
Q Consensus 364 g~ 365 (537)
|+
T Consensus 314 gg 315 (358)
T PRK13278 314 AG 315 (358)
T ss_pred CC
Confidence 65
No 66
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.94 E-value=4.5e-27 Score=252.02 Aligned_cols=383 Identities=18% Similarity=0.273 Sum_probs=304.7
Q ss_pred CCCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHH
Q 009316 69 CRQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS 137 (537)
Q Consensus 69 ~~~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~ 137 (537)
.+-+|+||+|.|.. +...++++|+.|+.++++..+.-.......+||..+.++ ...+-+-.
T Consensus 375 ~~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp--------vT~~~vt~ 446 (1435)
T KOG0370|consen 375 VEVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP--------VTPEYVTK 446 (1435)
T ss_pred ccccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee--------cCHHHHHH
Confidence 34589999998764 678999999999999999655545555567999999884 56777888
Q ss_pred HHHHcCCCEEEeCCCcccc-c--HHHHH--HHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHH
Q 009316 138 AAISRGCTMLHPGYGFLAE-N--AVFVE--MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE 212 (537)
Q Consensus 138 ~a~~~~~d~V~pg~g~lsE-~--~~~a~--~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~ 212 (537)
..+...+|+|..++|.-.. | .+.-+ .++..|.+..|.+.+++....|+..+.+.+.+.+.++.++ ..+.+.++
T Consensus 447 vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s--~a~~sie~ 524 (1435)
T KOG0370|consen 447 VIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPS--EAVSTIEE 524 (1435)
T ss_pred HHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccch--hhHhHHHH
Confidence 8888899999988763211 1 12222 5667788889999999999999999999999999999998 78899999
Q ss_pred HHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEE
Q 009316 213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (537)
Q Consensus 213 ~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~ 292 (537)
+.++++++|||+|+.++..-||.|--.++|.+||.+...++... ..+++||+-+.|++|+|++|+.|..++.+.
T Consensus 525 al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciT 598 (1435)
T KOG0370|consen 525 ALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCIT 598 (1435)
T ss_pred HHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------CceeeehhhhccccceEEEEEeccccchhh
Confidence 99999999999999999999999999999999999988776655 389999999999999999999999888876
Q ss_pred Eeeeee--eeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCeEEEEEeccCCCcccch
Q 009316 293 FGERDC--SIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVT 369 (537)
Q Consensus 293 ~~~r~~--s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-~g~~~~lEiN~R~~g~~~~~ 369 (537)
...-+. .+.-+....+-.+|+..++++..+.++..+.++.+++|..|-+++++.+++ .-++++||+|+|++....+.
T Consensus 599 vcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssaLA 678 (1435)
T KOG0370|consen 599 VCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSALA 678 (1435)
T ss_pred hcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhhhh
Confidence 632111 122233455667899999999999999999999999999999999999994 45699999999999999999
Q ss_pred hhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEeeeccCCCccCC
Q 009316 370 EMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMDSHVYPDYVVPP 449 (537)
Q Consensus 370 e~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d~~~~~G~~v~~ 449 (537)
..+||+.|.....++++|.+|+.....+.-... ..|.|+-..+..- .|-+......+...++..
T Consensus 679 SkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~------------AcFEpslDY~v~K----iprWDl~kf~~vs~~igs 742 (1435)
T KOG0370|consen 679 SKATGYPLAYTAAKLALGIPLPELKNSVTKTTT------------ACFEPSLDYCVVK----IPRWDLSKFQRVSTEIGS 742 (1435)
T ss_pred ccCccCcHHHHHHHHhcCcccccCCccccccee------------cccCcchhheeee----cccccHHHHHHHHHhhch
Confidence 999999999999999999998765433332222 2577874443322 122222222333455666
Q ss_pred CCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeeec
Q 009316 450 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (537)
Q Consensus 450 ~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~ 485 (537)
.+.| .|.|+..|++.+||.+|+.|..+. .+.|+.
T Consensus 743 smKS-vgEvm~iGR~feea~QKalr~vd~-~~~Gf~ 776 (1435)
T KOG0370|consen 743 SMKS-VGEVMAIGRTFEEAFQKALRMVDP-SLLGFM 776 (1435)
T ss_pred hhhh-hhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc
Confidence 6666 899999999999999999998764 344443
No 67
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.94 E-value=3e-25 Score=238.16 Aligned_cols=377 Identities=17% Similarity=0.239 Sum_probs=292.5
Q ss_pred CCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009316 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~~iLI~~~g~i-----------a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a 139 (537)
.+-++|+|.|.. |+..+|++|++|++++.|..+++.-+.....||..|. .-...+.++++-
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYF--------eeis~E~vmDiY 989 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYF--------EEISYERVMDIY 989 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhH--------hhhhhhhhhhhh
Confidence 356899998874 7899999999999999999999999999999998774 246788999999
Q ss_pred HHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHH
Q 009316 140 ISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 140 ~~~~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~ 218 (537)
...+...|+-. -|-+..| .|-.+.+.|.+++|.+|+.+..+.|+..+.+.|.+.||..|++ ...++.+++.+|++
T Consensus 990 e~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~W--kelt~~~eA~~F~~ 1065 (1435)
T KOG0370|consen 990 ELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAW--KELTSLEEAKKFAE 1065 (1435)
T ss_pred hhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhh--hhhccHHHHHHHHH
Confidence 88888776654 4455454 4556788899999999999999999999999999999999999 77899999999999
Q ss_pred hcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeee
Q 009316 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298 (537)
Q Consensus 219 ~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~ 298 (537)
++||||+|.|..=-.|.-|-++++++||+..++++..-+ .+.++++.+||+|++|++++.++. +|+++.....+.
T Consensus 1066 ~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~-~G~~~~haiSEH 1140 (1435)
T KOG0370|consen 1066 KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAISEH 1140 (1435)
T ss_pred hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhHHhhcccceechhhhcc-CCeEEEEehhhh
Confidence 999999999999999999999999999999999877654 368999999999999999999875 567765543321
Q ss_pred ee--ccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCC
Q 009316 299 SI--QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 376 (537)
Q Consensus 299 s~--~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGid 376 (537)
-. .-+.....-..|+..++++..+++.+++.++++++...|+++++|+..++ ++.+||+|-|.+.+.|...++.|+|
T Consensus 1141 vEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~n-~lkVIECN~RaSRSFPFvSKtlgvd 1219 (1435)
T KOG0370|consen 1141 VENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKDN-ELKVIECNVRASRSFPFVSKTLGVD 1219 (1435)
T ss_pred hhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecCC-eEEEEEeeeeeeccccceehhcCch
Confidence 11 11111222346888899999999999999999999999999999998765 5999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEE------EEeeCCCCCCC-CCCCceEEEEecCCCCeEEEeee----ccCCC
Q 009316 377 LIEEQIHVAMGGKLRYKQEDIVLQGHSIEC------RINAEDPFKNF-RPGPGIITAYLPAGGPFVRMDSH----VYPDY 445 (537)
Q Consensus 377 l~~~~i~~a~G~~l~~~~~~~~~~g~ai~~------ri~ae~p~~~f-~p~~G~i~~~~~~~~~~vr~d~~----~~~G~ 445 (537)
+++...++.+|.+++.... ....-.++.+ |+-..||.-+. +.+.|.+.-+-. + +.+.. +..|.
T Consensus 1220 fi~~At~~i~g~~~~~~~~-~~~dyV~vKvPqFSf~RLagADp~LgvEMaSTGEVAcFG~----~-~~eaylkam~sTgF 1293 (1435)
T KOG0370|consen 1220 FIALATRAIMGVPVPPDLL-LHPDYVAVKVPQFSFSRLAGADPVLGVEMASTGEVACFGE----D-RYEAYLKAMLSTGF 1293 (1435)
T ss_pred HHHHHHHHHhCCCCCCccc-cCCCeEEEEccccccccccCCCceeeeEeccccceeeccc----c-hHHHHHHHHHhcCc
Confidence 9999999999988754432 2222223322 44444553332 334444433310 0 11111 23355
Q ss_pred ccCCCCCCccEEEEEEcCCHHHHHHHHHHhh
Q 009316 446 VVPPSYDSLLGKLIVWAPTREKAIERMKRAL 476 (537)
Q Consensus 446 ~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al 476 (537)
+||. -+.+|..|.++.|.+..++...
T Consensus 1294 ~iPk-----~~i~i~ig~~k~ell~~~~~l~ 1319 (1435)
T KOG0370|consen 1294 KIPK-----KNILISIGSYKPELLPSARDLA 1319 (1435)
T ss_pred cccC-----CCeEEEeccchHHHHHHHHHHH
Confidence 5543 4566788888888776665544
No 68
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.94 E-value=9.2e-25 Score=220.20 Aligned_cols=263 Identities=23% Similarity=0.314 Sum_probs=187.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHH
Q 009316 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVE 162 (537)
Q Consensus 83 a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~~~a~ 162 (537)
...++++++++|+++..++.+.. .+.+... . ....++|++++....-......+.
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~-----------~~~~~~~-----~---------~~~~~~d~v~~r~~~~~~~~~~~~ 66 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPAL-----------PLPFGER-----P---------KELEDVDVAIIRCVSQSRALYSAR 66 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhhe-----------EEEcCCC-----c---------cccCCCCEEEEcCcchhhHHHHHH
Confidence 56789999999999998853321 1111100 0 011357887765211112234567
Q ss_pred HHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCC
Q 009316 163 MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKE 242 (537)
Q Consensus 163 ~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~ 242 (537)
.++..|+++++ ++++++.+.||..++++|+++|||+|++ ..+.+.+++.++.++++||+|+||..|++|+|+.++++
T Consensus 67 ~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t--~~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~ 143 (280)
T TIGR02144 67 LLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRT--YLAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIRD 143 (280)
T ss_pred HHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCe--EeeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECC
Confidence 78899999986 6899999999999999999999999998 56778888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEecccC-CcEEEEEEEEeCCCCEEEEeeeeeeecccccee-EEEcCCCCCCHHH
Q 009316 243 PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL-LEEAPSPALTPEL 320 (537)
Q Consensus 243 ~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g-~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~-~e~~P~~~l~~~~ 320 (537)
.+++.++++..... ....+..+++|+||++ .+++++.++++ ++++...|.....+.+... ....|.. +++
T Consensus 144 ~~~l~~~~~~~~~~--~~~~~~~~ivQefI~~~~~d~~v~vig~---~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~~-- 215 (280)
T TIGR02144 144 KDELESLLEHKEVL--GGSQHKLFYIQEYINKPGRDIRVFVIGD---EAIAAIYRYSNHWRTNTARGGKAEPCP-LDE-- 215 (280)
T ss_pred HHHHHHHHHHHHhh--cCCcCCeEEEEcccCCCCCceEEEEECC---EEEEEEEEcCCchhhhhhcCCceeccC-CCH--
Confidence 99998877542211 0112357999999986 47888877633 4443322211101111111 1123332 444
Q ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHc
Q 009316 321 RKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAM 386 (537)
Q Consensus 321 ~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~ 386 (537)
++.+.+.++++++|+ ++++|||+++++|++||+|||+|++.. -++..+|+|+.+..++.+.
T Consensus 216 --~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~--~~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 216 --EVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFK--NSVRVTGVNVAGEILEYAV 276 (280)
T ss_pred --HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchh--hhhHhhCCCHHHHHHHHHH
Confidence 466889999999997 789999999988789999999998543 3567799999999998764
No 69
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.93 E-value=2.8e-24 Score=217.52 Aligned_cols=294 Identities=16% Similarity=0.180 Sum_probs=214.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchh---hccCEEEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEE
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTML 147 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~---~~ad~~~~i~~~~~~~sy~~~--~~i~~~a~~~~~d~V 147 (537)
+|..+|+ ..|+.|.+-||+.|++|+++..... .-++. .++|+.+.++ +|.++ +.+.+..++.++ .+
T Consensus 19 ~i~t~~S-Hsal~i~~gAk~egf~t~~v~~~~r-~~~Y~~f~~~~d~~i~~~------~f~~~~~~~~~~~l~~~n~-i~ 89 (366)
T PRK13277 19 KIGVLAS-HSALDVFDGAKDEGFRTIAVCQKGR-ERTYREFKGIVDEVIVLD------KFKDILSEKVQDELREENA-IF 89 (366)
T ss_pred EEEEEec-chHHHHhccHHhcCCcEEEEEcCCC-cchhhhhccccceEEEec------chhhhhhHHHHHHHHHCCe-EE
Confidence 5555554 5799999999999999999975443 22232 4689999874 45553 366666655443 44
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHh--cCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEE
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM--GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~--~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~Pvv 225 (537)
+| .|.+.+....-..-.++.+|++|+ ...++.- +||..+.++|+++||++|+.+ .++ +++.+|||
T Consensus 90 iP-h~sf~~y~g~~~ie~~~~vp~fGn-r~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~----~~p-------~eId~PVI 156 (366)
T PRK13277 90 VP-NRSFAVYVGYDAIENEFKVPIFGN-RYLLRWEERTGEKNYYWLLEKAGIPYPKLF----KDP-------EEIDRPVI 156 (366)
T ss_pred ec-CCCeEEEecHHHHhhcCCCCcccC-HHHhhhhhccCHHHHHHHHHHcCCCCceee----cCc-------cccCccEE
Confidence 55 577767655544433688999985 6666666 889888889999999999874 233 35789999
Q ss_pred EeecCCCC--CcceEEeCCHHHHHHHHHHHHHHHHH-hcCCCcEEEEecccCCcEEEEEEEEeC-CCCEEEEeeee--ee
Q 009316 226 IKATAGGG--GRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERD--CS 299 (537)
Q Consensus 226 vKp~~g~g--g~Gv~~v~~~~el~~~~~~~~~~~~~-~~g~~~vlvEe~I~g~~ei~v~v~~d~-~G~vv~~~~r~--~s 299 (537)
|||..|.| |+|+++++|.+|+....++......- .-+..++++||||.| .++.++++.+. +|++..++... .+
T Consensus 157 VKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~es 235 (366)
T PRK13277 157 VKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQS 235 (366)
T ss_pred EEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeecccc
Confidence 99999999 99999999999998887665431100 001245679999999 89999999883 67665554321 11
Q ss_pred -------eccccc---------eeEEEcCCCCCCHHHHHHHHHHHHHHHHHcC------CcceeEEEEEEeCCCCeEEEE
Q 009316 300 -------IQRRNQ---------KLLEEAPSPALTPELRKAMGDAAVAAAASIG------YIGVGTVEFLLDERGSFYFME 357 (537)
Q Consensus 300 -------~~~~~~---------k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg------~~G~~~vEf~~~~~g~~~~lE 357 (537)
+..+.| -.....|.. +.+.+.+++.+.+.+++++++ +.|++++|+++++++++|++|
T Consensus 236 n~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~E 314 (366)
T PRK13277 236 NLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-IRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYD 314 (366)
T ss_pred ccccccccChhhhhhcccCCceEEEcCcccc-chHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEE
Confidence 000001 122245554 777899999999999999976 569999999999889999999
Q ss_pred EeccCCCcccchhhhcCCCHHHHHHH--HHcCCCCC
Q 009316 358 MNTRIQVEHPVTEMISSVDLIEEQIH--VAMGGKLR 391 (537)
Q Consensus 358 iN~R~~g~~~~~e~~tGidl~~~~i~--~a~G~~l~ 391 (537)
||||++|+.++. +..|.|...++++ +.+|+.+.
T Consensus 315 InpR~gGGtnl~-~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 315 VAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EcCCcCCCccce-eecCCCcHHHHhcCccccCCcch
Confidence 999999887765 3479999999999 89998864
No 70
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.93 E-value=1.8e-23 Score=215.98 Aligned_cols=396 Identities=20% Similarity=0.244 Sum_probs=275.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcC-CcEEEEecCC-CCCC-chhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTI-DKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~G-i~~v~v~~~~-d~~~-~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
..+|||+|.|..-..++-.+++.- +.-|.+-... -..+ ...++.+. .| +..|.+++.++|+++++..|
T Consensus 2 ~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~--dI-------~~~d~~ala~f~~e~~I~lV 72 (788)
T KOG0237|consen 2 RVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNL--DI-------SVADFEALASFCKEHNINLV 72 (788)
T ss_pred ceEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCcccCccccCccc--cc-------ChhhHHHHHHHHHHcceeEE
Confidence 467999999887777777777764 3333332111 1111 00111111 11 24689999999999999999
Q ss_pred EeCCCcccccH---HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCC-c
Q 009316 148 HPGYGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-P 223 (537)
Q Consensus 148 ~pg~g~lsE~~---~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~-P 223 (537)
++|. |.+ .++..+.+.||+++||+.++.++-.+|..+|++|.++|||+..| ..+++.+++..|.+..+| +
T Consensus 73 vvGP----E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y--~~ft~~e~a~sfi~~~~~~~ 146 (788)
T KOG0237|consen 73 VVGP----ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKY--KTFTDPEEAKSFIQSATDKA 146 (788)
T ss_pred EECC----chhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCccee--eeeCCHHHHHHHHHhCCCcc
Confidence 9997 543 46678899999999999999999999999999999999999999 788999999999999994 6
Q ss_pred EEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEecccCCcEEEEEEEEeCCCCEEEEee-eeee-
Q 009316 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDCS- 299 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g--~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~-r~~s- 299 (537)
+|||+..-..|+||.+..+.+|.-++++.+.... .|| ...++|||+++| .|+++-.+.|++ .+..+.. .|..
T Consensus 147 ~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LEG-eEvS~laftDG~-s~~~mp~aQDHKR 222 (788)
T KOG0237|consen 147 LVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLEG-EEVSFLAFTDGY-SVRPLPPAQDHKR 222 (788)
T ss_pred eEEeecccccCCceEeeccHHHHHHHHHHHHhhh--hhccccceEehhhhcCc-ceEEEEEEecCc-ccccCCcccchhh
Confidence 9999999999999999999999999998876543 344 468999999999 999999999987 4444422 1110
Q ss_pred -----eccccceeEEEcCCCCCCHHHHHHHH----HHHHHHHHHcC--CcceeEEEEEEeCCCCeEEEEEeccCCCc-cc
Q 009316 300 -----IQRRNQKLLEEAPSPALTPELRKAMG----DAAVAAAASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HP 367 (537)
Q Consensus 300 -----~~~~~~k~~e~~P~~~l~~~~~~~l~----~~a~~~~~alg--~~G~~~vEf~~~~~g~~~~lEiN~R~~g~-~~ 367 (537)
...+......++|+|..++++.+.+. +-+.+-++.=| |.|+...-++++++| +.+||.|.|++-- ..
T Consensus 223 l~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~-P~vLEfN~RFGDPEtQ 301 (788)
T KOG0237|consen 223 LGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG-PKVLEFNVRFGDPETQ 301 (788)
T ss_pred hcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC-ccEEEEecccCCchhh
Confidence 11112234447899988877665444 44444455444 559998999999988 9999999999421 22
Q ss_pred chhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCeEEEe---eeccCC
Q 009316 368 VTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGIITAYLPAGGPFVRMD---SHVYPD 444 (537)
Q Consensus 368 ~~e~~tGidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~~vr~d---~~~~~G 444 (537)
+.-....-||++.++..+-|+ |. .-++.+..++...-+.|..-+..-.-.-..|+.+..+..++.++- +.++.+
T Consensus 302 v~l~lLesDL~evi~a~~~~~-L~--~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss 378 (788)
T KOG0237|consen 302 VLLPLLESDLAEVILACCNGR-LD--TVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSS 378 (788)
T ss_pred hhHHHHHhHHHHHHHHHhhCC-cc--ccCccccccceEEEEEecCCCCCCCcCCcccccCcccCCCcceEEecccccccc
Confidence 333335669999888777775 32 223334334444444443211110011123444444445566652 334445
Q ss_pred CccCCCCCCccEEEEEEcCCHHHHHHHHHHhhhcceEeee--ccCHHHH
Q 009316 445 YVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV--PTTIEYH 491 (537)
Q Consensus 445 ~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~--~tn~~~~ 491 (537)
..++. ..++-.|.+.++|.++|.++++.+++.+.+.|- .|+|.|.
T Consensus 379 ~vvTN--GGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~r 425 (788)
T KOG0237|consen 379 NVVTN--GGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAWR 425 (788)
T ss_pred ceEec--CceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhhh
Confidence 33333 445667889999999999999999999999984 4555543
No 71
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.93 E-value=3.5e-26 Score=196.46 Aligned_cols=110 Identities=50% Similarity=0.822 Sum_probs=104.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|||++++|++++||++|++++++++++|..+.+..++|+.+.+++.+..++|+|.+.|++++++.++|++||
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 68999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHH
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i 179 (537)
||||++|+++|++.|++.|+.|+||++++|
T Consensus 81 Gyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 999999999999999999999999999875
No 72
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.9e-23 Score=210.55 Aligned_cols=269 Identities=21% Similarity=0.316 Sum_probs=207.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CCcccccHHHH
Q 009316 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFV 161 (537)
Q Consensus 83 a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg-~g~lsE~~~~a 161 (537)
+..++++++..|+++.-++...+.. +.... .... ....++|.++|. .|+..|+....
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~----------~~~~~-------~~~~-----~~~~~~~vvfp~lhG~~gEDg~iq 80 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGL----------WMLDK-------EVTK-----RVLQKADVVFPVLHGPYGEDGTIQ 80 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccce----------EEecc-------ccch-----hhcccCCEEEEeCCCCCCCCchHH
Confidence 7889999999999988886544321 11110 0000 222457888887 78888999999
Q ss_pred HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCC----CHHHHHHHHHhcCCcEEEeecCCCCCcce
Q 009316 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ----STEEAVKLADELGFPVMIKATAGGGGRGM 237 (537)
Q Consensus 162 ~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~----~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv 237 (537)
..++.+|++++|++..+-....||..+|.+++..|+|++++. ... +....+++.+..+||++|||...+++.|+
T Consensus 81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~--~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~ 158 (317)
T COG1181 81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYV--ALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGR 158 (317)
T ss_pred HHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCcccee--eeecccchhHHHHHhhcccCCCEEEEcCCccceeeE
Confidence 999999999999999999999999999999999999999983 333 23344567778999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeee-----eeeccccceeE----
Q 009316 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-----CSIQRRNQKLL---- 308 (537)
Q Consensus 238 ~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~-----~s~~~~~~k~~---- 308 (537)
.++++.+|+..+++.+... +.++++|+|+.+ +|++|.++.+.. ....++.-+ ..+..+..|.+
T Consensus 159 ~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~~-rei~v~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg 230 (317)
T COG1181 159 SPVNVEGDLQSALELAFKY------DRDVLREQGITG-REIEVGVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGG 230 (317)
T ss_pred EEeeeccchHHHHHHHHHh------CCceeeccCCCc-ceEEEEecCCcc-cceecCceEEecCCCeEEeeeccccCCCC
Confidence 9999999999988877765 689999999997 999999998744 222221111 11122222222
Q ss_pred --EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCeEEEEEeccCCCc----ccchhhhcCCCHHHHH
Q 009316 309 --EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQ 381 (537)
Q Consensus 309 --e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-~g~~~~lEiN~R~~g~----~~~~e~~tGidl~~~~ 381 (537)
..+|+. +++++.+++.+.|.++.+++|..|.+.+||++++ +|++|++|+|+.||.. .|..-...|++.....
T Consensus 231 ~~~~~pa~-lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~ 309 (317)
T COG1181 231 AQYDIPAG-LTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILV 309 (317)
T ss_pred ceeeCCCC-CCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHH
Confidence 256665 9999999999999999999999999999999997 7889999999999844 2444455788777665
Q ss_pred HHH
Q 009316 382 IHV 384 (537)
Q Consensus 382 i~~ 384 (537)
.++
T Consensus 310 ~~~ 312 (317)
T COG1181 310 LRF 312 (317)
T ss_pred HHH
Confidence 554
No 73
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.91 E-value=2.5e-24 Score=234.76 Aligned_cols=270 Identities=23% Similarity=0.359 Sum_probs=195.4
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCcccccHHH---
Q 009316 86 VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLAENAVF--- 160 (537)
Q Consensus 86 ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~--~~i~~~a~~~~~d~V~pg~g~lsE~~~~--- 160 (537)
.++-.+++|++.+.+++..|.++. |+.++++|++..+ ++. +.|++.|++.|+++++.. +|+..|
T Consensus 203 Ai~fY~klGf~~~~~y~~~d~~~~-----~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~ 271 (547)
T TIGR03103 203 AIALYEKLGFRRIPVFALKRKNAI-----NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLS 271 (547)
T ss_pred HHHHHHHCCCEEeeEEEEeccCCc-----CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEec
Confidence 344556889988888888777765 8999999776655 777 999999999999999943 343222
Q ss_pred ----HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcc
Q 009316 161 ----VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRG 236 (537)
Q Consensus 161 ----a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~G 236 (537)
+..++.. +.- -+++.+++.+.||..++++|+++|||+|++ ..+.+.+++.++++++| |+||||..|++|+|
T Consensus 272 ~g~~~~~~~~s-~~~-~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~--~~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~G 346 (547)
T TIGR03103 272 LGGRSIRCRES-LSE-LTSAVAMSLCDDKRLTRRLVSEAGLQVPEQ--QLAGNGEAVEAFLAEHG-AVVVKPVRGEQGKG 346 (547)
T ss_pred CCceEEEEEec-cCC-CCCHHHHHHhcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHhC-CEEEEECCCCCCcC
Confidence 1111111 111 258999999999999999999999999999 66788999999999998 69999999999999
Q ss_pred eEE-eCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEE----------------EEeCCCCEEEEeeeeee
Q 009316 237 MRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV----------------LADKYGNVVHFGERDCS 299 (537)
Q Consensus 237 v~~-v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v----------------~~d~~G~vv~~~~r~~s 299 (537)
|++ +++.+++.++++.+... ...+++|+||+| +++.+.| ++|+++++.++.++...
T Consensus 347 v~v~v~~~~eL~~a~~~a~~~------~~~vlvEe~i~G-~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~ 419 (547)
T TIGR03103 347 ISVDVRTPDDLEAAIAKARQF------CDRVLLERYVPG-EDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSR 419 (547)
T ss_pred eEEecCCHHHHHHHHHHHHhc------CCcEEEEEeccC-CeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhc
Confidence 997 99999999999987654 268999999999 7775544 44444444444333211
Q ss_pred eccc---c----------------------------ceeE--------EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcce
Q 009316 300 IQRR---N----------------------------QKLL--------EEAPSPALTPELRKAMGDAAVAAAASIGYIGV 340 (537)
Q Consensus 300 ~~~~---~----------------------------~k~~--------e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~ 340 (537)
...+ + +.+. ....+..+++.+..++.+.|+++++++|+ .+
T Consensus 420 ~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl-~~ 498 (547)
T TIGR03103 420 RRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDI-PV 498 (547)
T ss_pred CccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCC-Ce
Confidence 0000 0 0000 00111225667888999999999999999 57
Q ss_pred eEEEEEEeC--CCCeEEEEEeccCCCc-ccchhhhcCCCHHHHHHHHH
Q 009316 341 GTVEFLLDE--RGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVA 385 (537)
Q Consensus 341 ~~vEf~~~~--~g~~~~lEiN~R~~g~-~~~~e~~tGidl~~~~i~~a 385 (537)
+.||+++++ ...++|||+|.|++=. | ..-|..+..+++.
T Consensus 499 ~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h------~~~~~~~~~~d~l 540 (547)
T TIGR03103 499 VGIDFLVPDVTGPDYVIIEANERPGLANH------EPQPTAERFIDLL 540 (547)
T ss_pred EEEEEEeccCCCCCeEEEEecCCcccccc------CCCchHHHHHHHh
Confidence 789999874 2346999999999654 4 1245556666554
No 74
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.91 E-value=5.6e-23 Score=190.69 Aligned_cols=167 Identities=25% Similarity=0.421 Sum_probs=141.0
Q ss_pred HHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEee-cCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q 009316 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270 (537)
Q Consensus 192 l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp-~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe 270 (537)
|+++|+|+||| ..+.+.+++.++++++|||+|+|+ ..|..|+|.+++++.+|+..+++.+ +...+++|+
T Consensus 1 l~~~gip~~~~--~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPY--ATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EE--EEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCe--EEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 67899999999 789999999999999999999995 4555899999999999999998875 358999999
Q ss_pred cccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC
Q 009316 271 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER 350 (537)
Q Consensus 271 ~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~ 350 (537)
||+..+|+++.+.++.+|++..+...+ ..++++......+|+. +++.+.+++.++|.+++++|+|.|++.|||+++++
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~yp~~e-n~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~ 148 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRFYPPVE-NVHRDGILHESIAPAR-ISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKD 148 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEEEEEEE-EEEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETT
T ss_pred ccCCcEEEEEEEEEcCCCCEEEEcCce-EEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecC
Confidence 999999999999999999988887654 4566777777788987 99999999999999999999999999999999999
Q ss_pred CC-eEEEEEeccCCCcccchh
Q 009316 351 GS-FYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 351 g~-~~~lEiN~R~~g~~~~~e 370 (537)
|+ +||-||.||++.+..+|.
T Consensus 149 g~~v~vNEiaPRpHnSGh~Ti 169 (172)
T PF02222_consen 149 GDEVLVNEIAPRPHNSGHWTI 169 (172)
T ss_dssp STEEEEEEEESS--GGGGGHH
T ss_pred CCEEEEEeccCCccCcccEee
Confidence 98 999999999998755553
No 75
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.90 E-value=7.8e-23 Score=195.86 Aligned_cols=184 Identities=23% Similarity=0.397 Sum_probs=136.7
Q ss_pred HHHHcCCCCCCCCCcCCCCH--HH--HHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcE
Q 009316 191 TMKNAGVPTVPGSDGLLQST--EE--AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV 266 (537)
Q Consensus 191 ~l~~~Gvpvp~~~~~~v~~~--~~--~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~v 266 (537)
+++++|||+|++. .+... .. ..+....++||+||||..+|+|.|+.+|++.+||.++++++.+. +..+
T Consensus 1 l~~~~gI~tp~~~--~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~v 72 (203)
T PF07478_consen 1 LLKSAGIPTPPYV--VVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDV 72 (203)
T ss_dssp HHHHTT-BB-SEE--EEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEE
T ss_pred ChhhcCCCCCCEE--EEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceE
Confidence 5789999999994 44332 22 34567889999999999999999999999999999999987643 3799
Q ss_pred EEEecccCCcEEEEEEEEeCCCCEEEEeeeeee-----ecccc----ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 009316 267 YLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS-----IQRRN----QKLLEEAPSPALTPELRKAMGDAAVAAAASIGY 337 (537)
Q Consensus 267 lvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s-----~~~~~----~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~ 337 (537)
+||+||+| +|++|.+++++...+....+.... ....+ .......|+. +++++.++|.+.|.++.++||+
T Consensus 73 lVEefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~~i~~~a~~a~~~lg~ 150 (203)
T PF07478_consen 73 LVEEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQEKIKEIAKKAFKALGC 150 (203)
T ss_dssp EEEE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHHHHHHHHHHHHHHTTT
T ss_pred EEEeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 999999999777565555443221 11111 3345566776 9999999999999999999999
Q ss_pred cceeEEEEEEeCCCCeEEEEEeccCCCc----ccchhhhcCCCHHHHHHHH
Q 009316 338 IGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 338 ~G~~~vEf~~~~~g~~~~lEiN~R~~g~----~~~~e~~tGidl~~~~i~~ 384 (537)
+|++.+||+++++|++||+|+|+-++-+ .|..-...|+++-+..-++
T Consensus 151 ~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 151 RGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp CSEEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred CCceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999989999999999999754 2333345788877766554
No 76
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.89 E-value=9.3e-23 Score=229.37 Aligned_cols=255 Identities=22% Similarity=0.352 Sum_probs=193.6
Q ss_pred CCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE--------EEeCCCcccccHHHHHHHHHCCCceeCC
Q 009316 103 TIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM--------LHPGYGFLAENAVFVEMCREHGINFIGP 174 (537)
Q Consensus 103 ~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~--------V~pg~g~lsE~~~~a~~~e~~Gl~~iGp 174 (537)
+.|....+++.+++.+++||. ...|+++|++.++++ +++|||+.++. ++..+.. ++
T Consensus 141 ~~~~~~~~~~~~~~~~~lgps--------t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~------i~~~~~~--~~ 204 (727)
T PRK14016 141 DLEAALARLRELDEDERLGPS--------TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRR------IQAAETD--QT 204 (727)
T ss_pred CHHHHHHHHHHHHHhcccCCC--------HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHH------HHHhcCC--CC
Confidence 556777888899999999852 358999999999988 99999997753 3344443 78
Q ss_pred CHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEE-eCCHHHHHHHHHHH
Q 009316 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQA 253 (537)
Q Consensus 175 ~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~-v~~~~el~~~~~~~ 253 (537)
+..+++.++||..++++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|++|+||++ +++.+++.++++.+
T Consensus 205 s~~a~~i~~DK~~tk~lL~~~GIPvP~~--~~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 205 SAIAVDIACDKELTKRLLAAAGVPVPEG--RVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred cHHHHHHhCCHHHHHHHHHHCCcCCCCe--eEeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 9999999999999999999999999999 67899999999999999999999999999999998 99999999999987
Q ss_pred HHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeee-e------------c------ccc---c------
Q 009316 254 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS-I------------Q------RRN---Q------ 305 (537)
Q Consensus 254 ~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s-~------------~------~~~---~------ 305 (537)
... +..++||+||+| +++++.++ .|+++....|... + . ++. .
T Consensus 283 ~~~------~~~viVEe~I~G-~d~Rv~Vv---gg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i 352 (727)
T PRK14016 283 SKE------SSDVIVERYIPG-KDHRLLVV---GGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKI 352 (727)
T ss_pred HHh------CCeEEEEEecCC-ceEEEEEE---CCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCccccc
Confidence 654 378999999999 88887665 2366666554321 0 0 000 0
Q ss_pred -------------------------eeEE--------EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC---
Q 009316 306 -------------------------KLLE--------EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE--- 349 (537)
Q Consensus 306 -------------------------k~~e--------~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~--- 349 (537)
++.- ..-+...++.+.+++.+.|.++++.+|+ +++.||++.++
T Consensus 353 ~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~ 431 (727)
T PRK14016 353 KLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISK 431 (727)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCccc
Confidence 0000 0001123556778889999999999998 78889998863
Q ss_pred ---CCCeEEEEEeccCCCcc-cchhhhcCCCHHHHHHHHHc
Q 009316 350 ---RGSFYFMEMNTRIQVEH-PVTEMISSVDLIEEQIHVAM 386 (537)
Q Consensus 350 ---~g~~~~lEiN~R~~g~~-~~~e~~tGidl~~~~i~~a~ 386 (537)
...+.++|||..++... .......+.|.....+....
T Consensus 432 p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~L~ 472 (727)
T PRK14016 432 PLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDMLF 472 (727)
T ss_pred ccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHHhc
Confidence 12389999999996542 21223345666666665544
No 77
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.2e-20 Score=186.77 Aligned_cols=285 Identities=23% Similarity=0.304 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccC-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc-HH
Q 009316 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-AV 159 (537)
Q Consensus 82 ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~-~~ 159 (537)
...+..+++++.|++...++..........-.+- ....+.. .....| ..............|++++.-+..... ..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~ 95 (318)
T COG0189 18 TTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGE-VIGLHY-ELIEEEDLSLLDELDVIIMRKDPPFDFATR 95 (318)
T ss_pred hHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhh-cccccc-ccccccccchhccCCEEEEecCCchhhHHH
Confidence 4678889999999999888643221111111110 0000000 000000 000111122334678998875543333 45
Q ss_pred HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHH-HhcCCcEEEeecCCCCCcceE
Q 009316 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLA-DELGFPVMIKATAGGGGRGMR 238 (537)
Q Consensus 160 ~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~-~~ig~PvvvKp~~g~gg~Gv~ 238 (537)
+++.+|..|..++ ++++++..+.||..+.+++..+|+|+|++ ....+.+++..+. +.+|||+|+||..|++|+||.
T Consensus 96 ~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T--~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~ 172 (318)
T COG0189 96 FLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPT--LITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF 172 (318)
T ss_pred HHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCE--EEEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceE
Confidence 6789999999998 78999999999999999999999999999 7778876666555 456799999999999999999
Q ss_pred EeCCHH-HHHHHHHHHHHHHHHhcCCCcEEEEecccCCc-EEEEEEEEeCCCCEEEEe--eeee--eeccccceeEEEcC
Q 009316 239 LAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR-HIEFQVLADKYGNVVHFG--ERDC--SIQRRNQKLLEEAP 312 (537)
Q Consensus 239 ~v~~~~-el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~-ei~v~v~~d~~G~vv~~~--~r~~--s~~~~~~k~~e~~P 312 (537)
++++.+ ++.+.++...+. +...+|+|+||+-+. ....-++++ +.++... .|-+ .-.+.+...+....
T Consensus 173 ~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e 245 (318)
T COG0189 173 LVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALARIPASGDFRSNLARGGRAE 245 (318)
T ss_pred EecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC--CEEeEEeeeccccCCCCceeecccccccc
Confidence 999999 888888776543 234699999999854 444444444 3555532 2211 11222222222232
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHH
Q 009316 313 SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 385 (537)
Q Consensus 313 ~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a 385 (537)
...++++ +.+.|.++++++|. ++..||++.+.+| +|++|||..+.+ -..++..+|+|....+++..
T Consensus 246 ~~~l~~e----~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~~-~~~i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 246 PCELTEE----EEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPTG-KGEIERVTGVNIAGLIIDAI 311 (318)
T ss_pred ccCCCHH----HHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCcc-ccchhhhcCCchHHHHHHHH
Confidence 2235654 55889999999987 8888999999878 999999996643 34455568888888777654
No 78
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.85 E-value=2.4e-20 Score=174.81 Aligned_cols=174 Identities=27% Similarity=0.418 Sum_probs=135.0
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcE-EEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhc
Q 009316 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV-MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF 261 (537)
Q Consensus 183 ~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~Pv-vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~ 261 (537)
++|..+|++|+++|||++++ ..++|.+++.+++++.++|+ ||||..-.+|+||.++.+.+|..++++++... ..|
T Consensus 1 ~SK~faK~fm~~~~IPTa~~--~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~f 76 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKY--KVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKF 76 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--E--EEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STT
T ss_pred CCHHHHHHHHHHcCCCCCCe--eEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--ccc
Confidence 47999999999999999998 78999999999999999999 99999999999999999999999999988753 345
Q ss_pred C--CCcEEEEecccCCcEEEEEEEEeCCCCEEEEe-eeeeee------ccccceeEEEcCCCCCCHHHHHHHHH-HHHHH
Q 009316 262 G--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG-ERDCSI------QRRNQKLLEEAPSPALTPELRKAMGD-AAVAA 331 (537)
Q Consensus 262 g--~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~-~r~~s~------~~~~~k~~e~~P~~~l~~~~~~~l~~-~a~~~ 331 (537)
+ ...++||+|+.| .|+++.++.|+. +++.+. .+|..- .........++|.+.+++++.+++.+ +....
T Consensus 77 g~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt 154 (194)
T PF01071_consen 77 GDAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPT 154 (194)
T ss_dssp CCCGSSEEEEE---S-EEEEEEEEEESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHH
T ss_pred CCCCCcEEEEeccCC-eEEEEEEEEcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHH
Confidence 5 468999999999 999999999987 555553 333321 11122455678999889888777766 44444
Q ss_pred HHHc-----CCcceeEEEEEEeCCCCeEEEEEeccCC
Q 009316 332 AASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQ 363 (537)
Q Consensus 332 ~~al-----g~~G~~~vEf~~~~~g~~~~lEiN~R~~ 363 (537)
+++| .|.|+..+.++++++| +++||.|.|++
T Consensus 155 ~~~l~~eg~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 155 LKGLKKEGIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHHTT---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred HHHHHhcCCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 4444 6779999999999989 99999999994
No 79
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.83 E-value=1e-20 Score=175.11 Aligned_cols=156 Identities=22% Similarity=0.353 Sum_probs=90.6
Q ss_pred hcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhc
Q 009316 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF 261 (537)
Q Consensus 182 ~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~ 261 (537)
|.||..+.++|+++|||+|... ..... ....+|+|+||..|.||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 5799999999999999998331 11111 12378999999999999999999999988876542
Q ss_pred CCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeec---cccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CC
Q 009316 262 GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ---RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI-GY 337 (537)
Q Consensus 262 g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~---~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~al-g~ 337 (537)
..++|+||+| .++++.++.++. ++..++.....+. .++.+.....|.. ....+++.+.+.++++++ |+
T Consensus 63 ---~~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~i~~~l~gl 134 (161)
T PF02655_consen 63 ---LRIVQEFIEG-EPYSVSFLASGG-GARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKEEIIELARRIAEALPGL 134 (161)
T ss_dssp -----EEEE---S-EEEEEEEEE-SS-SEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT-
T ss_pred ---ceEEeeeeCC-EEeEEEEEEeCC-ceEEEEechHhhccccceeeecccccccC---CchHHHHHHHHHHHHHHcCCC
Confidence 2299999999 999999999865 5555543322221 1234555566653 344889999999999999 99
Q ss_pred cceeEEEEEEeCCCCeEEEEEeccCCC
Q 009316 338 IGVGTVEFLLDERGSFYFMEMNTRIQV 364 (537)
Q Consensus 338 ~G~~~vEf~~~~~g~~~~lEiN~R~~g 364 (537)
.|...|||++++ +++|+||||||+++
T Consensus 135 ~G~~giD~I~~~-~~~~viEINPR~t~ 160 (161)
T PF02655_consen 135 RGYVGIDFILDD-GGPYVIEINPRFTG 160 (161)
T ss_dssp -EEEEEEEEESS--SEEEEEEESS--G
T ss_pred eeeEeEEEEEeC-CcEEEEEEcCCCCC
Confidence 999999999988 45999999999975
No 80
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.82 E-value=1.5e-19 Score=171.84 Aligned_cols=182 Identities=28% Similarity=0.436 Sum_probs=110.8
Q ss_pred hcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc-CCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHh
Q 009316 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (537)
Q Consensus 182 ~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~ 260 (537)
+.||..+.++|+++|||+|++ ..+.+.+++.++.+++ ++|+|+||..|+.|+||.++++.+++...++.....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t--~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~---- 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPET--RVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL---- 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----E--EEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred CCCHHHHHHHHHHCCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc----
Confidence 369999999999999999998 7788999999999999 899999999999999999999999999988765432
Q ss_pred cCCCcEEEEecccCC--cEEEEEEEEeCCCCEEEEeeeeeee--cccc-ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q 009316 261 FGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGERDCSI--QRRN-QKLLEEAPSPALTPELRKAMGDAAVAAAASI 335 (537)
Q Consensus 261 ~g~~~vlvEe~I~g~--~ei~v~v~~d~~G~vv~~~~r~~s~--~~~~-~k~~e~~P~~~l~~~~~~~l~~~a~~~~~al 335 (537)
+..+++|+||+.. +++.|.+++ |+++....|.-.- .+.+ ..-....|.. ++ +++.+.|.++++++
T Consensus 75 --~~~~~~Q~fI~~~~g~d~Rv~Vig---~~vv~a~~r~~~~~d~r~n~~~g~~~~~~~-l~----~e~~~~a~~~~~~l 144 (190)
T PF08443_consen 75 --ENPILVQEFIPKDGGRDLRVYVIG---GKVVGAYRRSSPEGDFRTNLSRGGKVEPYD-LP----EEIKELALKAARAL 144 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEET---TEEEEEEE------------------EE---------HHHHHHHHHHHHHT
T ss_pred --cCcceEeccccCCCCcEEEEEEEC---CEEEEEEEEecCcccchhhhccCceEEEec-CC----HHHHHHHHHHHHHh
Confidence 4788999999974 489988884 3677665543211 1111 1111112222 33 56778899999999
Q ss_pred CCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHH
Q 009316 336 GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIH 383 (537)
Q Consensus 336 g~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~ 383 (537)
|+ .++.||++.+++| +||+|||+.+ +....+..+|+|+.+..++
T Consensus 145 gl-~~~giDi~~~~~~-~~v~EvN~~~--~~~~~~~~~g~~i~~~i~~ 188 (190)
T PF08443_consen 145 GL-DFAGIDILDTNDG-PYVLEVNPNP--GFRGIEEATGIDIAEEIAE 188 (190)
T ss_dssp T--SEEEEEEEEETTE-EEEEEEETT-----TTHHHHH---HHHHHHH
T ss_pred CC-CEEEEEEEecCCC-eEEEEecCCc--hHhHHHHHHCcCHHHHHHh
Confidence 98 7888996655655 9999999998 4667888999999998875
No 81
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=167.90 Aligned_cols=297 Identities=19% Similarity=0.188 Sum_probs=204.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC---EEEe
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT---MLHP 149 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d---~V~p 149 (537)
-|+|+|+..-...++|+..+..+.+.++..+. +...+.+++.....- +..++-..+.-+.++|.+++-. .|-.
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~~ls~d~-plPt~Sr~vr~t~~w---~gphd~gaiafLrd~Aekhglkg~LLva~ 80 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVLALSADG-PLPTYSRIVRVTTHW---NGPHDEGAIAFLRDFAEKHGLKGYLLVAC 80 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEEEEecCC-CCcchhhhheeeecc---CCCCcccHHHHHHHHHhhcCcCceEEEec
Confidence 48999988888889999999988888885433 333366777655543 2233445678888999887644 3333
Q ss_pred CCCcccccHHHHHHH-HHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 009316 150 GYGFLAENAVFVEMC-REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 150 g~g~lsE~~~~a~~~-e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp 228 (537)
|.|..--.....+.+ +...+ +-|++...+.+.+|-...+.+++.|+|+|.+ ..++|..+. .+.++-||+|+||
T Consensus 81 GDgev~lvSq~reeLSa~f~v--~lp~w~~l~wlceKPllY~ra~elgl~~P~T--y~v~S~~d~--~~~el~FPvILKP 154 (415)
T COG3919 81 GDGEVLLVSQYREELSAFFEV--PLPDWALLRWLCEKPLLYNRAEELGLPYPKT--YLVNSEIDT--LVDELTFPVILKP 154 (415)
T ss_pred CCceeeehHhhHHHHHHHhcC--CCCcHHHHHHHhhCcHHHHHHHHhCCCCcce--EEecchhhh--hhhheeeeEEecC
Confidence 344111111222222 22334 4689999999999999999999999999999 456766654 4567889999999
Q ss_pred cCCCC-----CcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcE--EEEEEEEeCCCCEEEEeeeeeeec
Q 009316 229 TAGGG-----GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH--IEFQVLADKYGNVVHFGERDCSIQ 301 (537)
Q Consensus 229 ~~g~g-----g~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~e--i~v~v~~d~~G~vv~~~~r~~s~~ 301 (537)
-.|++ -.-.+.+.|.+|+..++..+..+. +.++++||+||+|+-| ++...+.|+...|.. |+-.
T Consensus 155 ~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei----gpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvae-----ftar 225 (415)
T COG3919 155 GMGGSVHFEARAKAFTAADNEEMKLALHRAYEEI----GPDNVVVQEFIPGGGENQFSYAALWDKGHPVAE-----FTAR 225 (415)
T ss_pred CCCCcceeehhhheeeccCHHHHHHHHHHHHHhc----CCCceEEEEecCCCCcccchHHHHHhCCCchhh-----hhcc
Confidence 98884 334567789999999999887664 6789999999999544 455556664434322 2222
Q ss_pred cccceeEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-CCCCeEEEEEeccCCCcccchhhhcCCCHHH
Q 009316 302 RRNQKLLEEA-PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIE 379 (537)
Q Consensus 302 ~~~~k~~e~~-P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~-~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~ 379 (537)
+-.|...... .+....-...+++.+.++++++.+++.|...|||++| .||.+.++|||||+....-+. .+.|+||-.
T Consensus 226 r~rqyPvdfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~-taaG~nLg~ 304 (415)
T COG3919 226 RLRQYPVDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLV-TAAGYNLGR 304 (415)
T ss_pred hhhcCCcccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeEE-ecccccccc
Confidence 2222111100 0000011115788899999999999999999999999 789999999999985444333 347999988
Q ss_pred HHHHHHcCCC
Q 009316 380 EQIHVAMGGK 389 (537)
Q Consensus 380 ~~i~~a~G~~ 389 (537)
...+...+.+
T Consensus 305 ~Lwa~~~~~~ 314 (415)
T COG3919 305 YLWADRINNE 314 (415)
T ss_pred eEEeeecCCc
Confidence 8877777664
No 82
>PRK12458 glutathione synthetase; Provisional
Probab=99.76 E-value=1.8e-16 Score=163.57 Aligned_cols=277 Identities=15% Similarity=0.165 Sum_probs=172.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEecCCCCCCch--hhccCEEEEcCCCC--CCCCCCCHHHHHHHH-------HHcCCCEE
Q 009316 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLADESVCIGEAP--SSQSYLLIPNVLSAA-------ISRGCTML 147 (537)
Q Consensus 79 ~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~--~~~ad~~~~i~~~~--~~~sy~~~~~i~~~a-------~~~~~d~V 147 (537)
..-...+++.+|.+.||++..+.. +..... ...+.-...+.... ..+.+ ....... .-..+|+|
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~V 83 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTP--GDLTIRDDEALAFCAVTKKGKKYKKPENF---LSFLKKAEFKKERLPLAGFDVI 83 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEec--CcEEEECCEEEEEEEEEEecCcccCccch---hhHhhccccccccCchhhCCEE
Confidence 345678999999999999998842 221111 11111111121100 00100 0011111 11348999
Q ss_pred EeCC--CcccccHHHH--------HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHH
Q 009316 148 HPGY--GFLAENAVFV--------EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLA 217 (537)
Q Consensus 148 ~pg~--g~lsE~~~~a--------~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~ 217 (537)
++-- .+..+...++ ..++..|++++ +++++++.+.||..+.++++ +++|++ ....+.+++.++.
T Consensus 84 ~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T--~v~~~~~~~~~~~ 157 (338)
T PRK12458 84 FLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTT--HISRNKEYIREFL 157 (338)
T ss_pred EEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCE--EEeCCHHHHHHHH
Confidence 9853 2322212222 23356788877 89999999999999987665 678887 5677888999999
Q ss_pred HhcCCc-EEEeecCCCCCcceEEeCCHHH--HHHHHHHHHHHHHHhcCCCcEEEEecccCC--cEEEEEEEEeCCCCEE-
Q 009316 218 DELGFP-VMIKATAGGGGRGMRLAKEPDE--FVKLLQQAKSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVV- 291 (537)
Q Consensus 218 ~~ig~P-vvvKp~~g~gg~Gv~~v~~~~e--l~~~~~~~~~~~~~~~g~~~vlvEe~I~g~--~ei~v~v~~d~~G~vv- 291 (537)
+++++| +|+||..|+||+||+++++.++ +...++.... ...+++|+||++. .++.+.++ +|+++
T Consensus 158 ~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv---~g~~v~ 227 (338)
T PRK12458 158 EESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL---NGEPLE 227 (338)
T ss_pred HHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE---CCEEEe
Confidence 999775 9999999999999999987664 5555554322 3689999999863 45666654 34666
Q ss_pred -----EEeeeeeee--ccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceeEEEEEEeCCCCeEEEEEecc
Q 009316 292 -----HFGERDCSI--QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDERGSFYFMEMNTR 361 (537)
Q Consensus 292 -----~~~~r~~s~--~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~al---g~~G~~~vEf~~~~~g~~~~lEiN~R 361 (537)
+...|.... .|.+...........++++. .+.|.++...+ |+ .++.||++ | .+++|||++
T Consensus 228 ~~g~~~a~~R~~~~~d~RsN~~~Gg~~~~~~l~~~~----~~ia~~~~~~l~~~GL-~~~gVDli----~-~~l~EIN~~ 297 (338)
T PRK12458 228 RDGHYAAMRRVPAGGDVRSNVHAGGSVVKHTLTKEE----LELCEAIRPKLVRDGL-FFVGLDIV----G-DKLVEVNVF 297 (338)
T ss_pred eccceeEEEEecCCCCeeecccCCCcccCcCCCHHH----HHHHHHHHHHHhhcCC-eEEeEEEE----C-CEEEEEeCC
Confidence 554442211 11111111111111255444 45556665554 65 47789997 2 368999999
Q ss_pred CCCcccchhhhcCCCHHHHHHHHHc
Q 009316 362 IQVEHPVTEMISSVDLIEEQIHVAM 386 (537)
Q Consensus 362 ~~g~~~~~e~~tGidl~~~~i~~a~ 386 (537)
-+++.+..+..+|+|+.+..++...
T Consensus 298 sp~g~~~~~~~~g~d~a~~i~~~i~ 322 (338)
T PRK12458 298 SPGGLTRINKLNKIDFVEDIIEALE 322 (338)
T ss_pred CcchHHHHHHHhCCCHHHHHHHHHH
Confidence 8777777788899999999988764
No 83
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.72 E-value=2.7e-16 Score=148.90 Aligned_cols=194 Identities=19% Similarity=0.305 Sum_probs=145.4
Q ss_pred HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcce
Q 009316 158 AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGM 237 (537)
Q Consensus 158 ~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv 237 (537)
..+.+..++. ...+|+++++++.+.||+.+.+.++.+ +++|+++. + ...+--+|+||++|.||.|+
T Consensus 89 y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e-----------~-~~~~~k~ViKp~dgCgge~i 154 (307)
T COG1821 89 YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE-----------W-AEEPKKYVIKPADGCGGEGI 154 (307)
T ss_pred HHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc-----------c-ccCCceEEecccccCCccee
Confidence 4566777776 566799999999999999999999999 99999842 1 12345689999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeec-cccceeEEEcCCCCC
Q 009316 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-RRNQKLLEEAPSPAL 316 (537)
Q Consensus 238 ~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~-~~~~k~~e~~P~~~l 316 (537)
....+..++ .++|+||+| .|++|. +.++. ++..+...+.-+. ..........+.| .
T Consensus 155 ~~~~~~pd~-------------------~i~qEfIeG-~~lSVS-L~~GE-kv~pLsvNrQfi~~~~~~~~y~gg~~p-i 211 (307)
T COG1821 155 LFGRDFPDI-------------------EIAQEFIEG-EHLSVS-LSVGE-KVLPLSVNRQFIIFAGSELVYNGGRTP-I 211 (307)
T ss_pred eccCCCcch-------------------hhHHHhcCC-cceEEE-EecCC-ccccceechhhhhhccceeeeccCcCC-C
Confidence 998886653 478899999 999999 55554 4444432211010 1111122234555 6
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHHHcCCCC
Q 009316 317 TPELRKAMGDAAVAAAASIG-YIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390 (537)
Q Consensus 317 ~~~~~~~l~~~a~~~~~alg-~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~a~G~~l 390 (537)
+.++.+++.+.|.++++.++ +.|...||+++. |+ +|++|||||+.-..--...+++-++.+..+.-..|.-+
T Consensus 212 ~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~-pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~~ 284 (307)
T COG1821 212 DHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DE-PYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKVL 284 (307)
T ss_pred CcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CC-cEEEEecCCCCcceeeeeccccHHHHHHHhcCcccccc
Confidence 78999999999999999996 889999999997 44 99999999995443344566888888888887777654
No 84
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.71 E-value=6.6e-16 Score=177.34 Aligned_cols=241 Identities=24% Similarity=0.337 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHcCCCEEEeCCCccccc--HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCC
Q 009316 131 LIPNVLSAAISRGCTMLHPGYGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ 208 (537)
Q Consensus 131 ~~~~i~~~a~~~~~d~V~pg~g~lsE~--~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~ 208 (537)
+...|++.|.+.++....-..|.+... ....+..... ..--.+..+++.+.||..++++|+++|||+|++ ..+.
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~~--~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~--~~~~ 235 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQAT--ETDRTSAIAVEIACDKDLTKEILSDAGVPVPEG--TVVQ 235 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEee--cCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCE--EEEC
Confidence 456888888888887665332211110 0000111111 111257889999999999999999999999998 6789
Q ss_pred CHHHHHHHHHhcCCcEEEeecCCCCCcceEE-eCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCC
Q 009316 209 STEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (537)
Q Consensus 209 ~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~ 287 (537)
+.+++.++++++|||+||||..|++|+||.+ +++.+++.++++.+... +..++||+||+| +|+++.|+ .
T Consensus 236 s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~G-~e~rvlVv---~ 305 (864)
T TIGR02068 236 SAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFITG-RDHRLLVV---G 305 (864)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEeccC-CEEEEEEE---C
Confidence 9999999999999999999999999999998 99999999999887654 368999999999 99999776 3
Q ss_pred CCEEEEeeeeeee-------------c------cc---cceeEE------------------------------------
Q 009316 288 GNVVHFGERDCSI-------------Q------RR---NQKLLE------------------------------------ 309 (537)
Q Consensus 288 G~vv~~~~r~~s~-------------~------~~---~~k~~e------------------------------------ 309 (537)
|+++....|.... . ++ |.+...
T Consensus 306 ~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~N 385 (864)
T TIGR02068 306 GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATAN 385 (864)
T ss_pred CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEecccc
Confidence 4777776654321 0 00 000000
Q ss_pred ---EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC------CCCeEEEEEeccCCCc-ccchhhhcCCCHHH
Q 009316 310 ---EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE------RGSFYFMEMNTRIQVE-HPVTEMISSVDLIE 379 (537)
Q Consensus 310 ---~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~------~g~~~~lEiN~R~~g~-~~~~e~~tGidl~~ 379 (537)
..-+...++.+.++..+.|+++++++|+ -++.||++..+ .....+||+|..++-. |..-..-.+.++..
T Consensus 386 ls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~ 464 (864)
T TIGR02068 386 LSTGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVAR 464 (864)
T ss_pred ccCCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHH
Confidence 0111124567778889999999999999 55569998852 2236899999999654 43333445677777
Q ss_pred HHHHHHc
Q 009316 380 EQIHVAM 386 (537)
Q Consensus 380 ~~i~~a~ 386 (537)
..++...
T Consensus 465 ~Il~~lf 471 (864)
T TIGR02068 465 AIVDMLF 471 (864)
T ss_pred HHHHHhc
Confidence 7777665
No 85
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.70 E-value=3e-15 Score=153.19 Aligned_cols=273 Identities=16% Similarity=0.169 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhh--ccC-EEEEcCCCCCCCCCCCHH--HHHHHHHHcCCCEEEeCCC--cc
Q 009316 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVK--LAD-ESVCIGEAPSSQSYLLIP--NVLSAAISRGCTMLHPGYG--FL 154 (537)
Q Consensus 82 ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~--~ad-~~~~i~~~~~~~sy~~~~--~i~~~a~~~~~d~V~pg~g--~l 154 (537)
...+++.+|+++|+++..+.. +..+.... .+. ..+.+.. ....+.... ..+. -...|+|++-.+ +.
T Consensus 19 st~~L~~aa~~rG~~v~~~~~--~~l~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~---l~~~D~v~~R~~~~~~ 91 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEP--GDLSVVNGEVFARARPVRVGP--NKQDWYTLGEKVRLS---LGELDAVLMRKDPPFD 91 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEeh--hheEEECCEEEEEEEEEEecc--CCcceeecCcccccc---cccCCEEEEeCCCCCC
Confidence 578999999999999998843 22221111 111 0122210 011111110 1111 124799987642 21
Q ss_pred ccc---HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCC
Q 009316 155 AEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (537)
Q Consensus 155 sE~---~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g 231 (537)
.+. ..+.+.++..|.+++ +++++++.+.||..+.+++. ++|++ ....+.+++.+++++.| |+|+||..|
T Consensus 92 ~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T--~v~~~~~~~~~~~~~~g-~vVvKPl~G 163 (312)
T TIGR01380 92 MEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPT--LVTRDKAEIRAFLAEHG-DIVLKPLDG 163 (312)
T ss_pred hhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCE--EEeCCHHHHHHHHHHcC-CEEEEECCC
Confidence 111 467888889999887 78999999999999887753 78987 56778999999999998 999999999
Q ss_pred CCCcceEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEEecccC--CcEEEEEEEEeCCCCEEE-Eeeeeee--eccccc
Q 009316 232 GGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCS--IQRRNQ 305 (537)
Q Consensus 232 ~gg~Gv~~v~~~-~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g--~~ei~v~v~~d~~G~vv~-~~~r~~s--~~~~~~ 305 (537)
++|+|+.++++. .++...++.... .+...+++|+||+. ..++.+.+++ |+++. ...|... ..+.+.
T Consensus 164 ~~G~gv~~v~~~~~~~~~~~~~~~~-----~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N~ 235 (312)
T TIGR01380 164 MGGEGIFRLDPGDPNFNSILETMTQ-----RGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGNL 235 (312)
T ss_pred CCCceEEEEcCCCccHHHHHHHHHh-----ccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCccccc
Confidence 999999998753 334333333221 23468999999984 3688887773 46654 3333211 111121
Q ss_pred ee-EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHH
Q 009316 306 KL-LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 306 k~-~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~ 384 (537)
.. ....|.. ++++.+ ++.+.+...++++|+ .++.||++ | .||+|||.--+.++.-.+..+|+|+.+..++.
T Consensus 236 ~~Gg~~~~~~-l~~e~~-~ia~~~~~~~~~~gl-~~agVDii----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~ 307 (312)
T TIGR01380 236 AVGGRGEATE-LSERDR-EICADVAPELKRRGL-LFVGIDVI----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDA 307 (312)
T ss_pred cCCceeeccC-CCHHHH-HHHHHHHHHHHhcCC-cEEEEEEe----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHH
Confidence 11 1223332 565443 444444445566776 67789998 4 57999998744455557777999999988875
Q ss_pred H
Q 009316 385 A 385 (537)
Q Consensus 385 a 385 (537)
.
T Consensus 308 l 308 (312)
T TIGR01380 308 I 308 (312)
T ss_pred H
Confidence 4
No 86
>PRK05246 glutathione synthetase; Provisional
Probab=99.70 E-value=2.6e-15 Score=154.06 Aligned_cols=275 Identities=16% Similarity=0.151 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhhc--cC-EEEEcCCCCCCCCCCCHH--HHHHHHHHcCCCEEEeCCCc--c
Q 009316 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL--AD-ESVCIGEAPSSQSYLLIP--NVLSAAISRGCTMLHPGYGF--L 154 (537)
Q Consensus 82 ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~--ad-~~~~i~~~~~~~sy~~~~--~i~~~a~~~~~d~V~pg~g~--l 154 (537)
...+++++++++|+++..+.. ......... +. ..+.+.. ..+.+.... ....+ ...|+|++..+. .
T Consensus 20 st~~l~~aa~~~G~~v~~~~~--~dl~~~~~~i~~~~~~~~~~~--~~~~w~~~~~~~~~~l---~~~D~v~~R~~~~~~ 92 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEP--DDLSLRGGEVVARARPLTVRD--DKGDWYELGEEQRLPL---ADFDVILMRKDPPFD 92 (316)
T ss_pred hHHHHHHHHHHcCCEEEEEeh--hhcEEECCEEEEEEEEEEecc--CCccceeccccccCcc---ccCCEEEEcCCCCCC
Confidence 468899999999999988843 211111110 10 0011111 111121110 00111 237999976322 1
Q ss_pred cc---cHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCC
Q 009316 155 AE---NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (537)
Q Consensus 155 sE---~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g 231 (537)
.+ ...+.+.++..|++++ ++++++..+.||..+.+++. ++|++ ....+.+++.++.++.+ |+|+||..|
T Consensus 93 ~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T--~~~~~~~~~~~~~~~~~-~vVlKP~~G 164 (316)
T PRK05246 93 MEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPT--LVTRDKAEIRAFRAEHG-DIILKPLDG 164 (316)
T ss_pred hHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCE--EEeCCHHHHHHHHHHCC-CEEEEECCC
Confidence 11 1246677787899887 78999999999999988765 78887 66788999999999998 999999999
Q ss_pred CCCcceEEeCC-HHHHHHHHHHHHHHHHHhcCCCcEEEEecccC--CcEEEEEEEEeCCCCEEE-Eeeeeeee--ccccc
Q 009316 232 GGGRGMRLAKE-PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCSI--QRRNQ 305 (537)
Q Consensus 232 ~gg~Gv~~v~~-~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g--~~ei~v~v~~d~~G~vv~-~~~r~~s~--~~~~~ 305 (537)
++|+||.++.. ..++...++.+.. .+...+++|+||+. ..++.|.++ +|++++ ...|.... .+.+.
T Consensus 165 ~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~a~~R~~~~~~~rtN~ 236 (316)
T PRK05246 165 MGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV---DGEPVGYALARIPAGGETRGNL 236 (316)
T ss_pred CCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE---CCEEhhheeEecCCCCCcccCc
Confidence 99999999954 4444444443322 23468999999986 368888777 347776 55443211 12221
Q ss_pred ee-EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCcccchhhhcCCCHHHHHHHH
Q 009316 306 KL-LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 306 k~-~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~ 384 (537)
.. ....|.. ++++. .++...+.+.++.+|+ ..+.||++ | .|++|||..-.++....+..||+|+.+..++.
T Consensus 237 ~~Gg~~~~~~-l~~~~-~~ia~~~~~~l~~~gl-~~~GVDli----~-~~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~ 308 (316)
T PRK05246 237 AAGGRGEATP-LTERD-REICAAIGPELKERGL-IFVGIDVI----G-DYLTEINVTSPTGIREIERLTGVDIAGMLWDA 308 (316)
T ss_pred cCCceEeccC-CCHHH-HHHHHHHHHHHHHhCC-CEEEEEEe----C-CEEEEEeCCCchHHHHHHHHhCCCHHHHHHHH
Confidence 11 1223333 55543 3444444444466666 57889998 3 26999998744468888889999999999887
Q ss_pred HcC
Q 009316 385 AMG 387 (537)
Q Consensus 385 a~G 387 (537)
...
T Consensus 309 ~~~ 311 (316)
T PRK05246 309 IEA 311 (316)
T ss_pred HHH
Confidence 653
No 87
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.68 E-value=1.5e-15 Score=168.19 Aligned_cols=198 Identities=21% Similarity=0.296 Sum_probs=145.6
Q ss_pred CCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc-CCcEEEeecCCCCCcceEEeCC---HHHHHHH
Q 009316 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKE---PDEFVKL 249 (537)
Q Consensus 174 p~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v~~---~~el~~~ 249 (537)
.+..++..+.||..+|++|+++|||+|++ ..+.+.+++.+....+ +||+||||..|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g--~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFG--DEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 36677899999999999999999999998 6778887777766666 7999999999999999999876 7888888
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeee---------e------cc----c---cc--
Q 009316 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS---------I------QR----R---NQ-- 305 (537)
Q Consensus 250 ~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s---------~------~~----~---~~-- 305 (537)
++.+.+. +..++||+||+| +|++|.|+.+ +++....|.-. + .+ | +.
T Consensus 543 l~~A~~~------~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8766533 468999999999 9999998853 66666444210 0 00 0 00
Q ss_pred --ee---------------EEEcC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC
Q 009316 306 --KL---------------LEEAP-------------------SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 349 (537)
Q Consensus 306 --k~---------------~e~~P-------------------~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~ 349 (537)
++ ....| +..+++.+.....+.|+++++++|+. ++.||+++.+
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 00 00011 12356778889999999999999996 8889999862
Q ss_pred C--------CCeEEEEEeccCCCc-ccchhhhcCCCHHHHHHHH
Q 009316 350 R--------GSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 350 ~--------g~~~~lEiN~R~~g~-~~~~e~~tGidl~~~~i~~ 384 (537)
- ..+.+||+|.+++-. |..-..-.+-|+.+..++.
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHh
Confidence 1 126799999999765 4444444456666665543
No 88
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.67 E-value=3.3e-15 Score=167.99 Aligned_cols=243 Identities=21% Similarity=0.267 Sum_probs=163.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCC--ccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC
Q 009316 128 SYLLIPNVLSAAISRGCTMLHPGYG--FLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD 204 (537)
Q Consensus 128 sy~~~~~i~~~a~~~~~d~V~pg~g--~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~ 204 (537)
.-.+...|++.|++.|+.+..-.-+ ++.-. ....+.+...+.+ -..+..+...++||..++++|+++|||+|++
T Consensus 430 ~~~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~~~t-~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~-- 506 (752)
T PRK02471 430 MELSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNMT-SKDNYISPLIMENKVVTKKILAEAGFPVPAG-- 506 (752)
T ss_pred CChhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEecccc-CCCHHHHHHHhhCHHHHHHHHHHCCcCCCCE--
Confidence 3456778999999999887663211 11000 0000000111122 1235567888999999999999999999998
Q ss_pred cCCCCHHHHHHHHHhc-CCcEEEeecCCCCCcceEEe---CCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEE
Q 009316 205 GLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLA---KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 280 (537)
Q Consensus 205 ~~v~~~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v---~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v 280 (537)
..+.+.+++.+.+.++ |||+||||..|++|+||.++ .+.+++.++++.+.+. +..++||+||+| +|++|
T Consensus 507 ~~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~------~~~vlVEEfI~G-~E~Rv 579 (752)
T PRK02471 507 DEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFRE------DSSVLVEEFIVG-TEYRF 579 (752)
T ss_pred EEEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhc------CCcEEEEecccC-CEEEE
Confidence 6778888887777664 89999999999999999986 4688888888776532 468999999999 99999
Q ss_pred EEEEeCCCCEEEEeeeeee---------e----cccc---------cee---E-----------------EEcC------
Q 009316 281 QVLADKYGNVVHFGERDCS---------I----QRRN---------QKL---L-----------------EEAP------ 312 (537)
Q Consensus 281 ~v~~d~~G~vv~~~~r~~s---------~----~~~~---------~k~---~-----------------e~~P------ 312 (537)
.|+. |+++....|... + ...+ .+. + +..|
T Consensus 580 ~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v 656 (752)
T PRK02471 580 FVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIV 656 (752)
T ss_pred EEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEE
Confidence 8873 467766555321 0 0000 000 0 0001
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC--C----C--CeEEEEEeccCCCc-ccchh
Q 009316 313 -------------SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE--R----G--SFYFMEMNTRIQVE-HPVTE 370 (537)
Q Consensus 313 -------------~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~--~----g--~~~~lEiN~R~~g~-~~~~e 370 (537)
+..+++.+.+...+.|+++++++|+. ++.||+++.+ + . ++.+||+|.+++-. |..-.
T Consensus 657 ~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~ 735 (752)
T PRK02471 657 YLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMHCFPY 735 (752)
T ss_pred EecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcccccccCCCeEEEEecCCCchhhccCcc
Confidence 11356678889999999999999986 5559999863 1 1 47899999999654 43333
Q ss_pred hhcCCCHHHHHHHH
Q 009316 371 MISSVDLIEEQIHV 384 (537)
Q Consensus 371 ~~tGidl~~~~i~~ 384 (537)
.-...|+.+..++.
T Consensus 736 ~G~~r~v~~~i~d~ 749 (752)
T PRK02471 736 KGKGRRITPKILDK 749 (752)
T ss_pred CCCCcchHHHHHHH
Confidence 33455666665554
No 89
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.65 E-value=1.6e-14 Score=146.97 Aligned_cols=226 Identities=16% Similarity=0.198 Sum_probs=153.3
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE-eCCCcccccHHHH
Q 009316 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH-PGYGFLAENAVFV 161 (537)
Q Consensus 83 a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~-pg~g~lsE~~~~a 161 (537)
...++..|++.|+.++.|+.+.+-. + +...|+|+ =.++.........
T Consensus 38 ~~~l~~~~~~~Gi~~v~Id~~~pl~-------~-------------------------qgpfDvilhK~~~~~~~~~~~~ 85 (328)
T PLN02941 38 QPSLEALARSKGIDLVAIDPSRPLS-------E-------------------------QGPFDVILHKLYGKEWRQQLEE 85 (328)
T ss_pred hHHHHHHHHHCCCeEEEecCCCCcc-------c-------------------------cCCcCEEEEecCCHHHHHHHHH
Confidence 5668999999999999995432100 0 01123332 1121100111222
Q ss_pred HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCCCcCCCCHHHHH---HHHHhcCCcEEEeecCC
Q 009316 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG-------VPTVPGSDGLLQSTEEAV---KLADELGFPVMIKATAG 231 (537)
Q Consensus 162 ~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G-------vpvp~~~~~~v~~~~~~~---~~~~~ig~PvvvKp~~g 231 (537)
...+..|++++ +++++++.+.||..+...++++| ||+|++ ..+.+.+.+. ...++++||+|+||..|
T Consensus 86 ~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t--~v~~~~~~al~~~~~~~~l~~P~V~KPl~g 162 (328)
T PLN02941 86 YREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQ--LVVYDDESSIPDAVALAGLKFPLVAKPLVA 162 (328)
T ss_pred HHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCE--EEEcCHHHHHHHHHHHhcCCCCEEEeeccc
Confidence 34556788888 78999999999999999999999 999998 6677776543 34568999999999999
Q ss_pred ---CCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccC-CcEEEEEEEEeCCCCEEEEeeeeeeeccc--c-
Q 009316 232 ---GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQRR--N- 304 (537)
Q Consensus 232 ---~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g-~~ei~v~v~~d~~G~vv~~~~r~~s~~~~--~- 304 (537)
+.|++|.++.+++.|... ...+++||||.. ++.+.|-|++| ++ ....| .|...- .
T Consensus 163 ~Gss~gh~m~lv~~~~~L~~l-------------~~p~~lQEfVnh~g~d~RVfVvGd---~v-~~~~R-~S~~n~~~~~ 224 (328)
T PLN02941 163 DGSAKSHKMSLAYDQEGLSKL-------------EPPLVLQEFVNHGGVLFKVYVVGD---YV-KCVRR-FSLPDVSEEE 224 (328)
T ss_pred CCCccccceEEecCHHHHHhc-------------CCcEEEEEecCCCCEEEEEEEECC---EE-EEEEe-cCCccccccc
Confidence 789999999999888751 257999999953 68999988876 33 23222 221000 0
Q ss_pred ceeEE-----------------Ec-----CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC--CCeEEEEEec
Q 009316 305 QKLLE-----------------EA-----PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER--GSFYFMEMNT 360 (537)
Q Consensus 305 ~k~~e-----------------~~-----P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~--g~~~~lEiN~ 360 (537)
..... .. |.. ......+++.+.|.++.+++|. ++++||++.+.+ ++++++|||.
T Consensus 225 ~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~-~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~~~VidVN~ 302 (328)
T PLN02941 225 LSSAEGVLPFPRVSNAAASADDADNGGLDPEV-AELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDRYYVIDINY 302 (328)
T ss_pred cccccccccccccccccccccccccccccccc-ccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCceEEEEecC
Confidence 00000 00 000 1112345688999999999998 888899999852 3599999999
Q ss_pred cCC
Q 009316 361 RIQ 363 (537)
Q Consensus 361 R~~ 363 (537)
-++
T Consensus 303 fP~ 305 (328)
T PLN02941 303 FPG 305 (328)
T ss_pred CCc
Confidence 884
No 90
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.60 E-value=4.7e-13 Score=130.97 Aligned_cols=267 Identities=19% Similarity=0.263 Sum_probs=184.7
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEecCCCC-CCchhhccCEEEEcCCCCCCCCCCCHH--HHHHHHHHcCCCEEEeCCCccc
Q 009316 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDK-DALHVKLADESVCIGEAPSSQSYLLIP--NVLSAAISRGCTMLHPGYGFLA 155 (537)
Q Consensus 79 ~g~ia~~ii~aa~~~Gi~~v~v~~~~d~-~~~~~~~ad~~~~i~~~~~~~sy~~~~--~i~~~a~~~~~d~V~pg~g~ls 155 (537)
+...|+.|.+.||+.|++|++|....-. .-.....+|+.+.++ +|.|+- .+.+..++.++ .++| .|.+.
T Consensus 25 gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~~n~-I~IP-~gSfv 96 (361)
T COG1759 25 GSHSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD------KFSDILNEEIQEELRELNA-IFIP-HGSFV 96 (361)
T ss_pred ecchHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEec------hhHHHhhHHHHHHHHHcCe-EEec-CCceE
Confidence 3457999999999999999999753322 222344577777775 455542 44454544432 3444 55555
Q ss_pred ccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCc
Q 009316 156 ENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR 235 (537)
Q Consensus 156 E~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~ 235 (537)
+....-....++-+|.+| +...++.-.|...-+.+|+++||+.|.- ..++++ +.-|||||...--||+
T Consensus 97 ~Y~G~d~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~----~~~Pee-------Idr~VIVK~pgAkggR 164 (361)
T COG1759 97 AYVGYDGIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKK----YKSPEE-------IDRPVIVKLPGAKGGR 164 (361)
T ss_pred EEecchhhhhcccCcccc-cHhHhhhhcchhhHHHHHHHcCCCCCcc----cCChHH-------cCCceEEecCCccCCc
Confidence 554444466677889998 5788889899999999999999999964 567776 4569999999888999
Q ss_pred ceEEeCCHHHHHHHHHHHHHHHHHhc-CCCcEEEEecccCCcEEEEEEEEeC-CC--CEEEEeeeeeee-------cccc
Q 009316 236 GMRLAKEPDEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQNPRHIEFQVLADK-YG--NVVHFGERDCSI-------QRRN 304 (537)
Q Consensus 236 Gv~~v~~~~el~~~~~~~~~~~~~~~-g~~~vlvEe~I~g~~ei~v~v~~d~-~G--~vv~~~~r~~s~-------~~~~ 304 (537)
|-+++.|.+|+.+..+++.......- +-.++.+|+||-| .++-+..+... .+ +++.+..|-.|- ..+.
T Consensus 165 GyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ 243 (361)
T COG1759 165 GYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKD 243 (361)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeeeeheeeccchhhccCCHHH
Confidence 99999999999999998876321100 1247899999999 44444443211 22 222222221111 0011
Q ss_pred c---------eeEEEcCCCCCCHHHHHHHHHHHHHHHHHc------CCcceeEEEEEEeCCCCeEEEEEeccCCCccc
Q 009316 305 Q---------KLLEEAPSPALTPELRKAMGDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHP 367 (537)
Q Consensus 305 ~---------k~~e~~P~~~l~~~~~~~l~~~a~~~~~al------g~~G~~~vEf~~~~~g~~~~lEiN~R~~g~~~ 367 (537)
| -++...|.. +.+.+..++.+.+.+++++. |+.|+++.|.++++|=++|+.|+.+|+.++..
T Consensus 244 ql~l~~~ptyvv~Gn~p~v-lRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTN 320 (361)
T COG1759 244 QLELNLEPTYVVVGNIPVV-LRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTN 320 (361)
T ss_pred HhhcCCCceEEEECCcchh-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEeccccCCcc
Confidence 1 122233443 77888889999988888765 67799999999998888999999999987744
No 91
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.54 E-value=3.7e-13 Score=136.09 Aligned_cols=205 Identities=16% Similarity=0.130 Sum_probs=126.2
Q ss_pred CCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc--CC-cEEEeecCCCCCcceEEeCCHHH----
Q 009316 173 GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL--GF-PVMIKATAGGGGRGMRLAKEPDE---- 245 (537)
Q Consensus 173 Gp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i--g~-PvvvKp~~g~gg~Gv~~v~~~~e---- 245 (537)
.++.+...++.||..+..+++++|||+|++ ..+.+.+...+.+.++ ++ |+|+||..|++|+||.++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T--~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~ 103 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPEL--YGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKDGRYR 103 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCE--EEecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEeccccccc
Confidence 367788889999999999999999999997 3445444332223333 45 69999999999999999976544
Q ss_pred -----------HHHHHHHHHHHHHHhcCC-CcEEEEecccCC-----------cEEEEEEEEeCCCCEEEEeeeeee---
Q 009316 246 -----------FVKLLQQAKSEAAAAFGN-DGVYLEKYVQNP-----------RHIEFQVLADKYGNVVHFGERDCS--- 299 (537)
Q Consensus 246 -----------l~~~~~~~~~~~~~~~g~-~~vlvEe~I~g~-----------~ei~v~v~~d~~G~vv~~~~r~~s--- 299 (537)
+...+......-....+. ..+++|.++... +.+.|.++.+ .++....|...
T Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~vaa~~R~~~~~~ 180 (317)
T TIGR02291 104 KPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YPVMAMMRLPTRAS 180 (317)
T ss_pred cccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EEEEEEEEccCccC
Confidence 333333221111111122 245665554432 4677777643 34433333210
Q ss_pred eccccceeEEE-----------------------cCC-----CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCC
Q 009316 300 IQRRNQKLLEE-----------------------APS-----PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 351 (537)
Q Consensus 300 ~~~~~~k~~e~-----------------------~P~-----~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g 351 (537)
..+.+...... -|. ..+..+..+++.+.|.++.+++|+ |...+|++++.++
T Consensus 181 ~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~~~ 259 (317)
T TIGR02291 181 DGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDKEE 259 (317)
T ss_pred CcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCCC
Confidence 11111100000 010 012335667899999999999998 9999999998666
Q ss_pred CeEEEEEeccCCCcccchhhhcCCCHHHHHHHH
Q 009316 352 SFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 352 ~~~~lEiN~R~~g~~~~~e~~tGidl~~~~i~~ 384 (537)
.+++||+|+.++-+ +......|++-.-..+..
T Consensus 260 g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~~~ 291 (317)
T TIGR02291 260 GPLVLELNARPGLA-IQIANGAGLLPRLKHIEA 291 (317)
T ss_pred CEEEEEeCCCCCCC-HHHHHHCCCcHHHHHHHH
Confidence 69999999999765 333334566554444444
No 92
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.18 E-value=1e-09 Score=109.43 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=122.9
Q ss_pred HHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC-CC--CCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEe
Q 009316 164 CREHGINFIGPNPDSIRIMGDKSTARETMKNAG-VP--TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLA 240 (537)
Q Consensus 164 ~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G-vp--vp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v 240 (537)
-+..|++|+++ .+.||+...++|.+.. +. .|++ ....+.+++.+++++.+ -|+|||..|++|+||..+
T Consensus 4 k~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T--~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 4 KKQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPET--ELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred HhcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCc--eEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence 35678999866 4589999999999853 33 5666 67788899999998876 599999999999998876
Q ss_pred C----------------------CHHHHHHHHHHHHHHHHHhcCCCcEEEEecccC----Cc--EEEEEEEEeCCCC--E
Q 009316 241 K----------------------EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN----PR--HIEFQVLADKYGN--V 290 (537)
Q Consensus 241 ~----------------------~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g----~~--ei~v~v~~d~~G~--v 290 (537)
+ +.+++...+... .+...++||+.|+= .+ ++.|.+-.++.|. +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~v 147 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQV 147 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEE
Confidence 3 334555544432 34579999999874 24 4555555566664 3
Q ss_pred EEEeeeeee---eccccceeEEEcCC-CCC-----CHHHHHHHHHHHHHHHHHc----CC-cceeEEEEEEeCCCCeEEE
Q 009316 291 VHFGERDCS---IQRRNQKLLEEAPS-PAL-----TPELRKAMGDAAVAAAASI----GY-IGVGTVEFLLDERGSFYFM 356 (537)
Q Consensus 291 v~~~~r~~s---~~~~~~k~~e~~P~-~~l-----~~~~~~~l~~~a~~~~~al----g~-~G~~~vEf~~~~~g~~~~l 356 (537)
+....|-.. +..+...-....+. ..+ .....++|.+.+..+++.+ |. -|-..+|+-+|.+|++|+|
T Consensus 148 tg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWli 227 (262)
T PF14398_consen 148 TGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLI 227 (262)
T ss_pred EEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEE
Confidence 333333211 11111000111110 011 2346667777777777665 55 3678899999999999999
Q ss_pred EEeccCCC
Q 009316 357 EMNTRIQV 364 (537)
Q Consensus 357 EiN~R~~g 364 (537)
|+|++|+-
T Consensus 228 EvN~kP~~ 235 (262)
T PF14398_consen 228 EVNSKPGK 235 (262)
T ss_pred EEeCCCCc
Confidence 99999953
No 93
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.14 E-value=2.8e-09 Score=112.56 Aligned_cols=173 Identities=20% Similarity=0.297 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcC-CcEEEeec--CCCC--CcceEEeCCHHHHHHHHHHHHHHHH
Q 009316 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKAT--AGGG--GRGMRLAKEPDEFVKLLQQAKSEAA 258 (537)
Q Consensus 184 dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig-~PvvvKp~--~g~g--g~Gv~~v~~~~el~~~~~~~~~~~~ 258 (537)
+.+.+|++|+++|||+|++ ..+.+.+++.++++++| ||+|+||. .|+. +-||+++++.+++.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~--~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRG--YVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 4678899999999999998 67899999999999999 99999998 3332 2389999999999999988754211
Q ss_pred Hh--c---CC--CcEEEEecccCCcEEEEEEEEeC--CCCEEEEeeeee-e---eccc---cceeEEEcCCC--------
Q 009316 259 AA--F---GN--DGVYLEKYVQNPRHIEFQVLADK--YGNVVHFGERDC-S---IQRR---NQKLLEEAPSP-------- 314 (537)
Q Consensus 259 ~~--~---g~--~~vlvEe~I~g~~ei~v~v~~d~--~G~vv~~~~r~~-s---~~~~---~~k~~e~~P~~-------- 314 (537)
.. . +. ..++||+|+++.+|+.+.++.|+ .|.++.++..-- . +... .-..+...|..
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~ 161 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAR 161 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHH
Confidence 00 0 11 36999999996699999999986 455666552100 0 0000 01122222311
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCcceeEEE---EEEeCCCCeEEEEE
Q 009316 315 ------ALTPELRKAMGDAAVAAAASIGYIGVGTVE---FLLDERGSFYFMEM 358 (537)
Q Consensus 315 ------~l~~~~~~~l~~~a~~~~~alg~~G~~~vE---f~~~~~g~~~~lEi 358 (537)
.++....+++.+.+.++.+.+.-..+..+| ++++++|+++.+..
T Consensus 162 ~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Da 214 (386)
T TIGR01016 162 EIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDA 214 (386)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEee
Confidence 145566777778888877776543455555 34455555444443
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.10 E-value=4.3e-09 Score=111.21 Aligned_cols=109 Identities=29% Similarity=0.406 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc-CCcEEEeecCCCCCc----ceEEeCCHHHHHHHHHHHHHHHH
Q 009316 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEAA 258 (537)
Q Consensus 184 dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i-g~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~~~~~~~~ 258 (537)
+++.+|++|+++|||+|++ ..+.+.+++.++++++ |||+|+||....||+ ||++.++.+++.++++++.....
T Consensus 4 ~e~~ak~lL~~~gIpvp~~--~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRG--IVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCC--eeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 5788999999999999999 7899999999999999 999999998655555 99999999999999988764321
Q ss_pred --Hh---cC--CCcEEEEecccCCcEEEEEEEEeC-CCCEEEEe
Q 009316 259 --AA---FG--NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 294 (537)
Q Consensus 259 --~~---~g--~~~vlvEe~I~g~~ei~v~v~~d~-~G~vv~~~ 294 (537)
.. .+ -..++||+++++.+|+.+.+..|. .|.++.++
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 00 11 126999999996699999999986 57777554
No 95
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=99.07 E-value=1.2e-08 Score=103.08 Aligned_cols=197 Identities=17% Similarity=0.209 Sum_probs=126.7
Q ss_pred CCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC---------cCCCCHHHHHHHHHhc-CCcEEEeecCCCCCcceEEeCCH
Q 009316 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSD---------GLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEP 243 (537)
Q Consensus 174 p~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~---------~~v~~~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v~~~ 243 (537)
++.+...++.||..+++++.+.|||+|+... ....+.+++.+++... ..++|+||+.|++|+|+.+++..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 5678889999999999999999999999310 0134678888888764 58999999999999999998765
Q ss_pred H------HHHHHHHHHHHHHHHhcCCCcEEEEecccCCc-----------EEEEEEEEeCCCCEEEE--eeeee---ee-
Q 009316 244 D------EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR-----------HIEFQVLADKYGNVVHF--GERDC---SI- 300 (537)
Q Consensus 244 ~------el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~-----------ei~v~v~~d~~G~vv~~--~~r~~---s~- 300 (537)
+ +.......+.. .....+++|++|.-.. -+.|..+.+. |.+..+ .-|-- +.
T Consensus 96 ~~~~~~~~~~~~~~~~~~-----~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~ 169 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-----LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGV 169 (285)
T ss_pred cCcccccchhHHHHHHHh-----cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcc
Confidence 4 12222221111 1112899999987522 3556666554 443222 11100 00
Q ss_pred c-----------------------cccceeEEEcCCCC-----CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCC
Q 009316 301 Q-----------------------RRNQKLLEEAPSPA-----LTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGS 352 (537)
Q Consensus 301 ~-----------------------~~~~k~~e~~P~~~-----l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~ 352 (537)
. .......+.-|... +.-...+++.+.+.++.+.+...+....|+.+|++|
T Consensus 170 DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G- 248 (285)
T PF14397_consen 170 DNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG- 248 (285)
T ss_pred cccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-
Confidence 0 00111111122111 122456789999999999998889999999999999
Q ss_pred eEEEEEeccCCCcccchhhhcCCCHH
Q 009316 353 FYFMEMNTRIQVEHPVTEMISSVDLI 378 (537)
Q Consensus 353 ~~~lEiN~R~~g~~~~~e~~tGidl~ 378 (537)
+++||.|.+.+-+..+. .++|.-+.
T Consensus 249 p~llE~N~~~~pgl~~~-~~~g~gl~ 273 (285)
T PF14397_consen 249 PVLLEGNARWDPGLMIQ-IANGPGLF 273 (285)
T ss_pred cEEEEeeCCCCCCcHhh-hccCcchH
Confidence 99999999953333333 44554333
No 96
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.85 E-value=1.9e-08 Score=97.50 Aligned_cols=174 Identities=27% Similarity=0.371 Sum_probs=102.2
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCC-----CCcceEE-eCCHHHHHHHHHHHHHH
Q 009316 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-----GGRGMRL-AKEPDEFVKLLQQAKSE 256 (537)
Q Consensus 183 ~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~-----gg~Gv~~-v~~~~el~~~~~~~~~~ 256 (537)
.+-..++++|+.+|||+|++ ..+.+.+++.++++++|||+++|...-. ---||++ +++++++.++++++...
T Consensus 10 L~e~e~~~lL~~yGI~~~~~--~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~ 87 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPT--RLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRER 87 (222)
T ss_dssp E-HHHHHHHHHTTT--------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCe--eEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHH
Confidence 35567899999999999999 7899999999999999999999998654 2236777 89999999999999887
Q ss_pred HHHhcC---CCcEEEEeccc-CCcEEEEEEEEeC-CCCEEEEeeeeeeeccccceeEEEcCCCCCCHHHHHHHHHHHHHH
Q 009316 257 AAAAFG---NDGVYLEKYVQ-NPRHIEFQVLADK-YGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAA 331 (537)
Q Consensus 257 ~~~~~g---~~~vlvEe~I~-g~~ei~v~v~~d~-~G~vv~~~~r~~s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~ 331 (537)
...... ...++||+.++ ++.|+.+.+..|. .|.++.++.---... -.+-.....+| ++....++|.+.....
T Consensus 88 ~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~GG~~vE--~~~D~~~~l~P-l~~~~a~~mi~~l~~~ 164 (222)
T PF13549_consen 88 VAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGLGGIFVE--LLKDVAFRLPP-LSEADAREMIRELRAY 164 (222)
T ss_dssp HHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE-STTHH--HH---EEEESS---HHHHHHHHHTSTTH
T ss_pred HHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcCCCceee--eecceEEeeCC-CCHHHHHHHHHHHHhH
Confidence 655333 35899999999 5599999999986 689988865321111 11111223344 6776666666554433
Q ss_pred HHHcCCcceeEEE-------------EEEeCCCCeEEEEEeccC
Q 009316 332 AASIGYIGVGTVE-------------FLLDERGSFYFMEMNTRI 362 (537)
Q Consensus 332 ~~alg~~G~~~vE-------------f~~~~~g~~~~lEiN~R~ 362 (537)
--.-||+|.-..| +..+ ..++.=+|+||=+
T Consensus 165 ~lL~G~RG~p~~d~~al~~~l~~ls~l~~~-~p~I~eldiNPl~ 207 (222)
T PF13549_consen 165 PLLRGYRGRPPADLDALADLLVRLSQLAAD-LPEIAELDINPLI 207 (222)
T ss_dssp HHHH-------B-HHHHHHHHHHHHHHHHH-TTTEEEEEEEEEE
T ss_pred HhhcccCCCCCcCHHHHHHHHHHHHHHHHh-CCCEEEEEeeceE
Confidence 3334566542222 2222 3458888888865
No 97
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.55 E-value=3.4e-07 Score=85.17 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=76.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCC-HHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCc-
Q 009316 199 TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKE-PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR- 276 (537)
Q Consensus 199 vp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~-~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~- 276 (537)
+|++ .+..+.+++.+|.++.+. +|+||..|.||+||.++.. ...+...++.+... +...+++|+|++.-+
T Consensus 12 ~P~T--~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-----~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPT--LVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-----GERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--E--EEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-----TTS-EEEEE--GGGGG
T ss_pred CcCE--EEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-----CCccEEEEeccccccC
Confidence 3666 566789999999999998 9999999999999999977 44566655554332 346799999999732
Q ss_pred -EEEEEEEEeCCCCEEEEeeeeee--eccccceeEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCC
Q 009316 277 -HIEFQVLADKYGNVVHFGERDCS--IQRRNQKLLEE-APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGS 352 (537)
Q Consensus 277 -ei~v~v~~d~~G~vv~~~~r~~s--~~~~~~k~~e~-~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~ 352 (537)
|.++-++ +|+.++...|.-. ..|.+...... .+. .+++..+ ++++.....+..-|+ =+..+|++ |
T Consensus 84 GDkRii~~---nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~-~lt~~e~-~i~~~i~~~L~~~Gl-~f~GiDvi----g- 152 (173)
T PF02955_consen 84 GDKRIILF---NGEPSHAVRRIPAKGDFRSNLAAGGSAEPA-ELTERER-EICEQIGPKLREDGL-LFVGIDVI----G- 152 (173)
T ss_dssp -EEEEEEE---TTEE-SEEEEE--SS-S---GGGTSCEEEE-E--HHHH-HHHHHHHHHHHHTT---EEEEEEE----T-
T ss_pred CCEEEEEE---CCEEhHHeecCCCCCCceeeeccCCceeec-CCCHHHH-HHHHHHHHHHhhcCc-EEEEEecc----c-
Confidence 6666665 4566655443211 11111111111 111 1454443 333333333444443 35668887 3
Q ss_pred eEEEEEeccCC
Q 009316 353 FYFMEMNTRIQ 363 (537)
Q Consensus 353 ~~~lEiN~R~~ 363 (537)
-|++|||---.
T Consensus 153 ~~l~EiNvtsp 163 (173)
T PF02955_consen 153 DKLTEINVTSP 163 (173)
T ss_dssp TEEEEEE-SS-
T ss_pred cceEEEeccCc
Confidence 38999997543
No 98
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.55 E-value=4.4e-06 Score=88.11 Aligned_cols=108 Identities=24% Similarity=0.254 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCc-EEEeecCCCC----CcceEEeCCHHHHHHHHHHHHHHHH-
Q 009316 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGG----GRGMRLAKEPDEFVKLLQQAKSEAA- 258 (537)
Q Consensus 185 K~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~P-vvvKp~~g~g----g~Gv~~v~~~~el~~~~~~~~~~~~- 258 (537)
-+..|++|+++|||+|++ ..+.+.+++.++++++||| +++|+..-.| +.||.+..|.+++.++++++.....
T Consensus 5 E~eak~lL~~yGIpvp~~--~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRG--ALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCc--eEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 467899999999999999 7899999999999999995 5999743232 3468999999999999998876421
Q ss_pred --Hh----cCCCcEEEEecccCCcEEEEEEEEeC-CCCEEEEe
Q 009316 259 --AA----FGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 294 (537)
Q Consensus 259 --~~----~g~~~vlvEe~I~g~~ei~v~v~~d~-~G~vv~~~ 294 (537)
.. ..-..++||+++++.+|+-+.+..|. .|.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 11 11247999999998899999999986 57877775
No 99
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.50 E-value=2.6e-06 Score=86.83 Aligned_cols=107 Identities=30% Similarity=0.433 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcC-CcEEEeecCCCCCc----ceEEeCCHHHHHHHHHHHHHHH--
Q 009316 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEA-- 257 (537)
Q Consensus 185 K~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~~~~~~~-- 257 (537)
-+.+|++++++|||+|++ ..+.+.+++.+++.++| .|+|+|+---.||| ||++++|.+|..++.+.+....
T Consensus 5 EYqaKelf~~~GiPvp~g--~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPG--YVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCc--eeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 468899999999999999 78999999999999998 89999997666655 5999999999999988876511
Q ss_pred --HHhcCCCcEEEEeccc-CCcEEEEEEEEeCCCC-EEEE
Q 009316 258 --AAAFGNDGVYLEKYVQ-NPRHIEFQVLADKYGN-VVHF 293 (537)
Q Consensus 258 --~~~~g~~~vlvEe~I~-g~~ei~v~v~~d~~G~-vv~~ 293 (537)
...-.-..+|||++++ -.+|+-+.++.|+... ++.+
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~ 122 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLM 122 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEE
Confidence 1100124899999999 4449989988887544 4444
No 100
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.48 E-value=6.8e-06 Score=86.94 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=80.8
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhc---CCcEEEeec--CCCCC---------cceEEeCCHHHHHH
Q 009316 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL---GFPVMIKAT--AGGGG---------RGMRLAKEPDEFVK 248 (537)
Q Consensus 183 ~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~i---g~PvvvKp~--~g~gg---------~Gv~~v~~~~el~~ 248 (537)
-+-+.++++|+++|||+|++ ..+.+.+++.+.++++ ++|+|+|+. .|+-| -||.++++ +++.+
T Consensus 30 l~EyqaK~LL~~~GIpvp~~--~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~ 106 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKG--AAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE 106 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence 35678899999999999999 7889999999999998 699999998 44433 34667766 99999
Q ss_pred HHHHHHHHHH--Hh-----cCCCcEEEEecccCCcEEEEEEEEeCC--CCEEE
Q 009316 249 LLQQAKSEAA--AA-----FGNDGVYLEKYVQNPRHIEFQVLADKY--GNVVH 292 (537)
Q Consensus 249 ~~~~~~~~~~--~~-----~g~~~vlvEe~I~g~~ei~v~v~~d~~--G~vv~ 292 (537)
+++++..... .. ..-..+++|+.+...+|+-+.+..|.. |.++.
T Consensus 107 aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil 159 (422)
T PLN00124 107 LAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLII 159 (422)
T ss_pred HHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEE
Confidence 9988765411 10 111368867766666899999999863 55663
No 101
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.23 E-value=2e-06 Score=82.09 Aligned_cols=102 Identities=27% Similarity=0.413 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCc-EEEeecCCCCCcc----eEEeCCHHHHHHHHHHHHHHHHH
Q 009316 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLLQQAKSEAAA 259 (537)
Q Consensus 185 K~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~P-vvvKp~~g~gg~G----v~~v~~~~el~~~~~~~~~~~~~ 259 (537)
-+.++++|+++|||+|++ .++.+.+++.+++..+|.+ +||||---.|||| |.+++|++|..++.+++......
T Consensus 4 EyqaK~ll~~~gi~vp~g--~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRG--VVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SE--EEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467899999999999999 7899999999999999985 7999976666654 99999999999988775432110
Q ss_pred -------hcCCCcEEEEecccCCcEEEEEEEEeCCC
Q 009316 260 -------AFGNDGVYLEKYVQNPRHIEFQVLADKYG 288 (537)
Q Consensus 260 -------~~g~~~vlvEe~I~g~~ei~v~v~~d~~G 288 (537)
...-..++||++++-.+|+-+.+..|+..
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~ 117 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRES 117 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTT
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCC
Confidence 00113789999999989999998888753
No 102
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.23 E-value=3.7e-05 Score=71.41 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=100.8
Q ss_pred CCHHHHHHhcCHHHHHHHHH----Hc---CCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHH
Q 009316 174 PNPDSIRIMGDKSTARETMK----NA---GVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEF 246 (537)
Q Consensus 174 p~~~~i~~~~dK~~~r~~l~----~~---Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el 246 (537)
++.+++-.+.||-+....|. +. .+|..+.+ ...+..+ ......||+|||--.+.+|.|-.+|+|..++
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt--~ypnh~e---m~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~ 75 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQT--YYPNHRE---MLSAPRFPVVVKVGHAHAGMGKVKVDNQQDF 75 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---E--EESSGGG---GCS-SSSSEEEEESS-STTTTEEEE-SHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceee--ecCChhh---hccCCCCCEEEEEccccCceeEEEEccHHHH
Confidence 35677888889887655553 33 45655542 2233333 2334579999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeee--e-ccccceeEEEcCCCCCCHHHHHH
Q 009316 247 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--I-QRRNQKLLEEAPSPALTPELRKA 323 (537)
Q Consensus 247 ~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s--~-~~~~~k~~e~~P~~~l~~~~~~~ 323 (537)
.+...-+... +..+.+|+||+-..++.+|-+++ +...+..+..+ + .+-..-..|..+. + ++
T Consensus 76 qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~---~ykA~~R~sis~nWK~N~gsa~lEqi~~---~----~r 139 (203)
T PF02750_consen 76 QDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKANTGSAMLEQIAM---T----ER 139 (203)
T ss_dssp HHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT---EEEEEEEEESSSTSSTTSSSEEEEEE----------HH
T ss_pred HHHHHHHHhc------CceEEeeccccceeEEEEEEEcC---eEEEEEEccccccccccccchheeecCC---C----hH
Confidence 8766555432 47899999999878888888865 33444322111 1 1222234443332 2 34
Q ss_pred HHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEecc
Q 009316 324 MGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 361 (537)
Q Consensus 324 l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R 361 (537)
...++..+.+.+|---++.+|.+..+||+-|++|+|--
T Consensus 140 yk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds 177 (203)
T PF02750_consen 140 YKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDS 177 (203)
T ss_dssp HHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-T
T ss_pred HHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCC
Confidence 55677777888865578899999999999999999953
No 103
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.22 E-value=6.5e-05 Score=78.76 Aligned_cols=107 Identities=14% Similarity=0.248 Sum_probs=84.1
Q ss_pred HHHHHHHHHHc-----CCCCCCCCCcCC-CCHHHHHHHHHh---cCCc-EEEeecCCCCCcc----eEEeCCHHHHHHHH
Q 009316 185 KSTARETMKNA-----GVPTVPGSDGLL-QSTEEAVKLADE---LGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLL 250 (537)
Q Consensus 185 K~~~r~~l~~~-----Gvpvp~~~~~~v-~~~~~~~~~~~~---ig~P-vvvKp~~g~gg~G----v~~v~~~~el~~~~ 250 (537)
-+..|++|+++ |||+|.+ .+. .+.+++.+++++ ++.| +||||---.|||| |.+++|++|+.++.
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~--~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a 85 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIR--SAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV 85 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCC--eeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence 45678888888 9999998 556 899999999888 7775 6999987777776 99999999999999
Q ss_pred HHHHHHHHHhc----CCCcEEEEecccCCcEEEEEEEEeCCCCEEEE
Q 009316 251 QQAKSEAAAAF----GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 251 ~~~~~~~~~~~----g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~ 293 (537)
+++......-. .-..++||++++-.+|+-+.++.|+....+.+
T Consensus 86 ~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~ 132 (423)
T PLN02235 86 KERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISF 132 (423)
T ss_pred HHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEE
Confidence 88765321000 11378999999988999999998887665444
No 104
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.14 E-value=2e-05 Score=79.75 Aligned_cols=181 Identities=17% Similarity=0.282 Sum_probs=107.9
Q ss_pred HHHHHHHC-CCceeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCCCcCCC-CHHHHHHHH--HhcCCcEEEee
Q 009316 160 FVEMCREH-GINFIGPNPDSIRIMGDKSTARETMKNA-------GVPTVPGSDGLLQ-STEEAVKLA--DELGFPVMIKA 228 (537)
Q Consensus 160 ~a~~~e~~-Gl~~iGp~~~~i~~~~dK~~~r~~l~~~-------Gvpvp~~~~~~v~-~~~~~~~~~--~~ig~PvvvKp 228 (537)
+.+..+++ .+.++ -++++++.+.|+..+.+.+.+. .+.+|++ ..+. +.+++.+.. +.+.||+|.||
T Consensus 69 l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~--v~i~~~~~~~~~~l~~agL~fPlI~KP 145 (307)
T PF05770_consen 69 LEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKF--VVINSDAESLPELLKEAGLKFPLICKP 145 (307)
T ss_dssp HHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-E--EEESSSHCCHHHHHHCTTS-SSEEEEE
T ss_pred HHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCce--EEEcCCHHHHHHHHHHCCCcccEEeee
Confidence 33444443 56666 5689999999999999988874 6778876 4444 343444443 46789999999
Q ss_pred cCCC---CCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccC-CcEEEEEEEEeCCCCEEEEeeeeeeeccc-
Q 009316 229 TAGG---GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQRR- 303 (537)
Q Consensus 229 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g-~~ei~v~v~~d~~G~vv~~~~r~~s~~~~- 303 (537)
.... .+..|.++.+++.|.+. ..++++|+||.. +.-+-|-|++|. +....|. |+..-
T Consensus 146 lvA~Gsa~SH~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~----v~~v~R~-SLpn~~ 207 (307)
T PF05770_consen 146 LVACGSADSHKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDK----VFVVKRP-SLPNVS 207 (307)
T ss_dssp SB-SSTSCCCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTE----EEEEEEE-------
T ss_pred hhhcCCccceEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCE----EEEEECC-CCCCCC
Confidence 7654 46779999999998752 278999999985 567777777552 2332321 11000
Q ss_pred ----cc-e-eEE---------------Ec--CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-CC-CCeEEEEE
Q 009316 304 ----NQ-K-LLE---------------EA--PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ER-GSFYFMEM 358 (537)
Q Consensus 304 ----~~-k-~~e---------------~~--P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~-~~-g~~~~lEi 358 (537)
.+ . ... .. +.. ....-.+.+.+.|..+=++||+ ..+++|++++ .+ |++|+|.|
T Consensus 208 ~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~VIDI 285 (307)
T PF05770_consen 208 SGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYYVIDI 285 (307)
T ss_dssp SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEEEEEE
T ss_pred cccccccccceeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEEEEEe
Confidence 00 0 000 00 111 1112245677888888889998 7888999998 56 78999999
Q ss_pred eccCC
Q 009316 359 NTRIQ 363 (537)
Q Consensus 359 N~R~~ 363 (537)
|.=|+
T Consensus 286 NyFPg 290 (307)
T PF05770_consen 286 NYFPG 290 (307)
T ss_dssp EES--
T ss_pred ccCCC
Confidence 99764
No 105
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=98.11 E-value=0.00011 Score=72.23 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=109.1
Q ss_pred HHHHHhcCHHHHHHHHHHcC--CCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHH
Q 009316 177 DSIRIMGDKSTARETMKNAG--VPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 254 (537)
Q Consensus 177 ~~i~~~~dK~~~r~~l~~~G--vpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~ 254 (537)
..+..+.||...|+.+++.+ ...||.. ...++.+++. .+.+.-++||||..|+|+..+....+.-+...+...+.
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~ 89 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLN 89 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHH
Confidence 34567899999999999985 3445543 4556666652 24567889999999999888887665444443333332
Q ss_pred HHHHHhcC-----------CCcEEEEecccCC-----cEEEEEEEEeCCCCEEEEeee-e-------eeeccccc--eeE
Q 009316 255 SEAAAAFG-----------NDGVYLEKYVQNP-----RHIEFQVLADKYGNVVHFGER-D-------CSIQRRNQ--KLL 308 (537)
Q Consensus 255 ~~~~~~~g-----------~~~vlvEe~I~g~-----~ei~v~v~~d~~G~vv~~~~r-~-------~s~~~~~~--k~~ 308 (537)
.-....++ ...+++|++|... .+|-+-++ +|++..+... + +-.-+..+ ...
T Consensus 90 ~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~ 166 (239)
T PF14305_consen 90 RWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFR 166 (239)
T ss_pred HHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE---CCEEEEEEEEeCCCCCeEEEEECcccCCCccc
Confidence 21111111 3589999999862 35666665 3444333221 0 00000000 000
Q ss_pred EEcC--CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccCCCc
Q 009316 309 EEAP--SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (537)
Q Consensus 309 e~~P--~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~~g~ 365 (537)
...| .....++..++|.+.|.++.+.+. ...|||...+ |++||-|+-..++++
T Consensus 167 ~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~~-~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 167 SDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNVD-GKIYFGELTFTPGAG 221 (239)
T ss_pred cCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEeC-CcEEEEeeecCCCCc
Confidence 0111 111345677888888888887755 4699998775 559999999999776
No 106
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=97.91 E-value=0.00012 Score=61.50 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=64.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCC-cEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi-~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+||||+|.|-.-..++.++++.-. .-+.+. ..+.. .....+.+.+ +..|.+.++++|++.++|.|+.|
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~a-PGN~G---~~~~~~~~~~-------~~~d~~~l~~~a~~~~idlvvvG 69 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVA-PGNPG---TAELGKNVPI-------DITDPEELADFAKENKIDLVVVG 69 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEE-E--TT---GGGTSEEE-S--------TT-HHHHHHHHHHTTESEEEES
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEe-CCCHH---HHhhceecCC-------CCCCHHHHHHHHHHcCCCEEEEC
Confidence 589999999888899999987643 222222 22222 2222333444 46899999999999999999988
Q ss_pred CCcccccH---HHHHHHHHCCCceeCCCHHHHHH
Q 009316 151 YGFLAENA---VFVEMCREHGINFIGPNPDSIRI 181 (537)
Q Consensus 151 ~g~lsE~~---~~a~~~e~~Gl~~iGp~~~~i~~ 181 (537)
. |.+ -+++.+++.|++++||+.++.++
T Consensus 70 P----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 70 P----EAPLVAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp S----HHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred C----hHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence 7 553 46789999999999999887654
No 107
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.74 E-value=0.0002 Score=72.74 Aligned_cols=55 Identities=25% Similarity=0.546 Sum_probs=30.8
Q ss_pred cEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCC-----c--EEEEEEEEeC
Q 009316 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-----R--HIEFQVLADK 286 (537)
Q Consensus 223 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~-----~--ei~v~v~~d~ 286 (537)
-+|+||..++.|+|++++++.+++.+. .......++||+||+.+ + ++.+-|+...
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts 128 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTS 128 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEee
Confidence 499999999999999999999988854 11235899999999852 3 5666666544
No 108
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00066 Score=68.02 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=125.5
Q ss_pred HHcCCCEEEeCCCc--ccccH---HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHH----cC---CCCCCCCCcCC
Q 009316 140 ISRGCTMLHPGYGF--LAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKN----AG---VPTVPGSDGLL 207 (537)
Q Consensus 140 ~~~~~d~V~pg~g~--lsE~~---~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~----~G---vpvp~~~~~~v 207 (537)
+....|+|+-+-+. ..+|. .+...+...||+++ ++...+-.+.||-+.+.-|.+ .| +|..+.. ..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt--~y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQT--FY 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceee--ec
Confidence 33557777766332 22332 34455678899998 789999999999877766543 45 5655542 11
Q ss_pred CCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCC
Q 009316 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (537)
Q Consensus 208 ~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~ 287 (537)
-+-.+ ....-.||+|||--.+..|.|-.+|+|.+|+.+.-.-+.- . +...-+|.||+-..++.||-++..+
T Consensus 229 PnHK~---m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval-~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 229 PNHKE---MLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVAL-T-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred CCchh---hccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHH-H-----hhhhhccccccccceeehhhhhhhH
Confidence 22122 2233459999999999999999999999998875443321 1 3667899999987889998887644
Q ss_pred CCEEEEeeeeeeeccccceeEEEcCCCCCC-HHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEec
Q 009316 288 GNVVHFGERDCSIQRRNQKLLEEAPSPALT-PELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNT 360 (537)
Q Consensus 288 G~vv~~~~r~~s~~~~~~k~~e~~P~~~l~-~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~ 360 (537)
+ .+..+. + -.+.|.-.. +..|. -..-++-.-+...+-+.+|---++.|+.+..+||+=|++|+|-
T Consensus 300 -K--aymRts--I-sgnWKtNtG--SamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d 365 (488)
T KOG3895|consen 300 -K--AYMRTS--I-SGNWKTNTG--SAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMD 365 (488)
T ss_pred -H--HHhhhh--h-ccCcccCch--HHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecc
Confidence 1 111110 0 111111100 00011 0112233334455556667667888999999999999999987
No 109
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.31 E-value=0.0004 Score=59.88 Aligned_cols=113 Identities=15% Similarity=0.268 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHcCCcEEEEecCCCCCCch--hhccCEEEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCccc
Q 009316 80 GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLA 155 (537)
Q Consensus 80 g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~--~~~ad~~~~i~~~~~~~sy~~~--~~i~~~a~~~~~d~V~pg~g~ls 155 (537)
...|+.|.+-||+.|++|++|.... +...+ ..++|+.+.++ +|.++ +.+.+-.++.+ +|+--.|.+.
T Consensus 6 SHSALqIl~GAk~EGFrT~~ic~~~-r~~~Y~~f~~iDe~i~~d------~f~di~~~~~q~~L~~~N--~I~VPhgSfv 76 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTIAICQKG-REKFYRRFPFIDEVIVLD------SFSDILSEEVQEKLREMN--AIFVPHGSFV 76 (124)
T ss_dssp STTHHHHHHHHHHTT--EEEEEETT-CHHHHHTTTT-SEEEEES------SCGHCCSHHHHHHHHHTT--EEE--BTTHH
T ss_pred chHHHHHhhhHHHcCCcEEEEECCC-CcchhhhcCcCcEEEEeC------CHHHHHhHHHHHHHHHCC--eEEecCCCee
Confidence 3469999999999999999987533 32222 44789999874 34332 25555555543 4544466666
Q ss_pred ccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 156 ENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 156 E~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
+....-..-.+..+|++|+ ...++.-.|...-+++|+++|||.|..
T Consensus 77 ~Y~G~d~ie~~~~vP~FGN-R~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 77 AYVGYDRIENEFKVPIFGN-RNLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp HHH-HHHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred EeecHHHHhhcCCCCeecC-hHHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 6554433333489999995 677777779999999999999999974
No 110
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.13 E-value=0.0058 Score=56.42 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=60.8
Q ss_pred CcEEEEecccCCcEEEEEEEEeC-CCCEEEE--eeeeeeeccc----c-----------c-eeEEEcCCCCCCHHHHHHH
Q 009316 264 DGVYLEKYVQNPRHIEFQVLADK-YGNVVHF--GERDCSIQRR----N-----------Q-KLLEEAPSPALTPELRKAM 324 (537)
Q Consensus 264 ~~vlvEe~I~g~~ei~v~v~~d~-~G~vv~~--~~r~~s~~~~----~-----------~-k~~e~~P~~~l~~~~~~~l 324 (537)
.++.+||||-| -++-+..+... .+++=.+ ..|-.+-... . . -++...|.. +.+.+.+++
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESLLPKV 98 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGGHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhhHHHH
Confidence 68999999999 66666666533 2233222 2222110000 0 0 122334554 778888999
Q ss_pred HHHHHHHHHHc------CCcceeEEEEEEeCCCCeEEEEEeccCCCc
Q 009316 325 GDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (537)
Q Consensus 325 ~~~a~~~~~al------g~~G~~~vEf~~~~~g~~~~lEiN~R~~g~ 365 (537)
.+++.+++++. |+.|++++|.+++++.++++.|+.+|+.++
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCC
Confidence 99988887765 777999999999999999999999999876
No 111
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.94 E-value=0.0063 Score=64.69 Aligned_cols=195 Identities=18% Similarity=0.173 Sum_probs=113.1
Q ss_pred CCCcccccccCCcccccCCCCCCCCCCCCCCEEEEEcCcHH-----HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCE
Q 009316 42 NFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE 116 (537)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLI~~~g~i-----a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~ 116 (537)
++|.+++|+...-..- +.- .+.....+|.|+.--+. =..+.+...++|+++++++ ++ ...+.|.
T Consensus 161 ~~~~~~~~vd~~l~~y-~~~----~~~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d--~~----~L~y~~g 229 (445)
T PF14403_consen 161 PLPLFQSWVDALLDIY-RTF----GGRVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICD--PR----DLEYRDG 229 (445)
T ss_pred CcchHHHHHHHHHHHH-HHh----cCcCCCCcEEEEecccCCccchHHHHHHHHHHcCCceEecC--hH----HceecCC
Confidence 4455555555554443 111 12222345667663222 2456788889999999983 22 1333455
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHH--
Q 009316 117 SVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKN-- 194 (537)
Q Consensus 117 ~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~-- 194 (537)
..+.+ -.-+|.|-..+... -+++.++ +...+.++...--+.++| +-..++++||..+.-+-.+
T Consensus 230 ~L~~~-------~~~ID~VyRR~Vt~---e~l~~~d---~~~~li~Ay~~~av~~vg--sfrs~l~hnK~iFaiL~d~~~ 294 (445)
T PF14403_consen 230 RLYAG-------GRPIDAVYRRFVTS---ELLERYD---EVQPLIQAYRDGAVCMVG--SFRSQLLHNKIIFAILHDERT 294 (445)
T ss_pred EEEEC-------CEeeehhhHhhhhH---Hhhhccc---cchHHHHHHhcCCeEEec--chhhhhhhhhHHHHHhcChhh
Confidence 45433 12234444443321 1233333 445566777666677775 4566677777765533322
Q ss_pred -------------cCCCCCCCCCcCCCC--------HHHHHHHHHhcCCcEEEeecCCCCCcceEE--eCCHHHHHHHHH
Q 009316 195 -------------AGVPTVPGSDGLLQS--------TEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQ 251 (537)
Q Consensus 195 -------------~Gvpvp~~~~~~v~~--------~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~--v~~~~el~~~~~ 251 (537)
..||.. ..++. .-++.+++....--+|+||.++.||+||.+ =.++++..++++
T Consensus 295 ~~~Lt~ee~~~I~~HvP~T----~~l~~~~~~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~ 370 (445)
T PF14403_consen 295 TAFLTAEERAFIRRHVPWT----RLLTAGRTTYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALE 370 (445)
T ss_pred cccCCHHHHHHHHHhCCce----EEEcCccccccccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHH
Confidence 224432 22222 335555555555679999999999999998 456888888887
Q ss_pred HHHHHHHHhcCCCcEEEEecccC
Q 009316 252 QAKSEAAAAFGNDGVYLEKYVQN 274 (537)
Q Consensus 252 ~~~~~~~~~~g~~~vlvEe~I~g 274 (537)
++. +.++++|+|+.-
T Consensus 371 ~a~--------~~~yilQe~v~~ 385 (445)
T PF14403_consen 371 EAA--------REPYILQEYVRP 385 (445)
T ss_pred HHh--------cCCcEEEEEecC
Confidence 764 368999999987
No 112
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.56 E-value=0.05 Score=55.06 Aligned_cols=150 Identities=20% Similarity=0.229 Sum_probs=98.3
Q ss_pred HHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHH
Q 009316 137 SAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKL 216 (537)
Q Consensus 137 ~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~ 216 (537)
+.+.+.++....--||-...++-++..+..+++. ++. +..- .-+...+.+...=-+.|+ ..+.|.+++..+
T Consensus 59 ~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~--a~aP---~GW~~~fa~~~~~~vL~G--~tvFs~~DA~~A 129 (355)
T PF11379_consen 59 AQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPD--AAAP---AGWSPAFAERVRDAVLPG--YTVFSREDARRA 129 (355)
T ss_pred hHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCC--CCCC---CCcCHHHHHHHhhhccCC--ccccCHHHHHHH
Confidence 4566677754443344444444455555555553 222 1111 223344555554456677 457889998887
Q ss_pred HHhc--CCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEe
Q 009316 217 ADEL--GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (537)
Q Consensus 217 ~~~i--g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~ 294 (537)
+..+ +-||=+||..+.||+|..++.+.++|..+++.+...... ...+++|+-++...-+||--+.-. |.++.+.
T Consensus 130 ~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~ 205 (355)
T PF11379_consen 130 ARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRVA-GLVASYY 205 (355)
T ss_pred HHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEEC-CEEEEEe
Confidence 7765 579999999999999999999999999999876544322 367999999998777888755542 3555554
Q ss_pred eeeee
Q 009316 295 ERDCS 299 (537)
Q Consensus 295 ~r~~s 299 (537)
...+.
T Consensus 206 GtQ~l 210 (355)
T PF11379_consen 206 GTQRL 210 (355)
T ss_pred eEeec
Confidence 44443
No 113
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.54 E-value=0.04 Score=48.95 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=73.7
Q ss_pred CcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEEEEeeeeeeec
Q 009316 222 FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301 (537)
Q Consensus 222 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~ 301 (537)
-|++|||....-.--=.++.+.+++...- ....+..+++.+.++-..|+.+-++ +|+++.....
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~Y----- 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSPY----- 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEE---CCEEEEEeec-----
Confidence 48999999866554445666666655211 1124679999999998889999887 5577765431
Q ss_pred cccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcC-CcceeEEEEEEeCCCCeEEEEEeccC
Q 009316 302 RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIG-YIGVGTVEFLLDERGSFYFMEMNTRI 362 (537)
Q Consensus 302 ~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg-~~G~~~vEf~~~~~g~~~~lEiN~R~ 362 (537)
+.. +....+. ++.+.+.+.+++.. .--...+|+=++++|+++++|+|.=-
T Consensus 66 ~~~-------~~~~~~~----~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~ 116 (130)
T PF14243_consen 66 RGD-------WDLEPDP----DVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGW 116 (130)
T ss_pred CCC-------cccCCCH----HHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCcc
Confidence 111 1111233 33444455555333 33678899999988889999999854
No 114
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.06 E-value=0.05 Score=54.10 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=59.5
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
++|||+|+ |+ +..+++.+.+.|+++++...+..............+..+ -++.+.+.+++++.++|+|+=.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g-------~l~~~~l~~~l~~~~i~~VIDA 72 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG-------ALDPQELREFLKRHSIDILVDA 72 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC-------CCCHHHHHHHHHhcCCCEEEEc
Confidence 47999998 66 999999999999988876544443322222212344443 4677888899999999887632
Q ss_pred -CCccccc-HHHHHHHHHCCCcee
Q 009316 151 -YGFLAEN-AVFVEMCREHGINFI 172 (537)
Q Consensus 151 -~g~lsE~-~~~a~~~e~~Gl~~i 172 (537)
+-|-.+. ....++|++.|++++
T Consensus 73 tHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 73 THPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcEE
Confidence 2122222 234456666666655
No 115
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.79 E-value=0.084 Score=45.88 Aligned_cols=98 Identities=26% Similarity=0.294 Sum_probs=60.4
Q ss_pred CEEEEEc----CcHHHHHHHHHHHHcCCcEEEEecCCCCC---Cchhh------ccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009316 72 EKILVAN----RGEIAVRVIRTAHEMGIPCVAVYSTIDKD---ALHVK------LADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 72 ~~iLI~~----~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~---~~~~~------~ad~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
|+|.|+| .+..+.++++.+++.|++++.|+...+.- ..+.. -.|-++.+- .-.....+++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~------~~~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV------PPDKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-------HHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc------CHHHHHHHHHH
Confidence 5788998 45569999999999999999996554321 11112 233333221 11234556666
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHH
Q 009316 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPD 177 (537)
Q Consensus 139 a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~ 177 (537)
+.+.++..++-..| .++.++.+.+++.|++++||+--
T Consensus 75 ~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 75 AAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-H
T ss_pred HHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcc
Confidence 77778988876666 36678999999999999998743
No 116
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.43 E-value=0.16 Score=50.21 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|+++|||+|+..=++.+++.+.+.|+++++-....... .......+..| ...+.+.+.++++++++++|+=
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~---~~~~~~~v~~G------~l~~~~~l~~~l~~~~i~~VID 71 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG---PADLPGPVRVG------GFGGAEGLAAYLREEGIDLVID 71 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC---cccCCceEEEC------CCCCHHHHHHHHHHCCCCEEEE
Confidence 56789999999999999999999999876543222222 11112344454 2338999999999999988763
Q ss_pred C-CCccccc-HHHHHHHHHCCCcee
Q 009316 150 G-YGFLAEN-AVFVEMCREHGINFI 172 (537)
Q Consensus 150 g-~g~lsE~-~~~a~~~e~~Gl~~i 172 (537)
. +-|-.+- ....++|+++|++++
T Consensus 72 ATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 72 ATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CCCccHHHHHHHHHHHHHHhCCcEE
Confidence 2 2243332 245567777777765
No 117
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=95.18 E-value=0.22 Score=48.71 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCC-chhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~-~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
++++|||+|+..=++.+++.+...+. .+++++..+... +....+. .+.. .+++.+.+.++.+++++|.++
T Consensus 1 ~~~~ilvlGGT~Dar~la~~L~~~~~-~~~~ss~t~~g~~l~~~~~~-~~~~-------G~l~~e~l~~~l~e~~i~llI 71 (257)
T COG2099 1 SMMRILLLGGTSDARALAKKLAAAPV-DIILSSLTGYGAKLAEQIGP-VRVG-------GFLGAEGLAAFLREEGIDLLI 71 (257)
T ss_pred CCceEEEEeccHHHHHHHHHhhccCc-cEEEEEcccccccchhccCC-eeec-------CcCCHHHHHHHHHHcCCCEEE
Confidence 35789999999999999999999994 344444444333 2333333 3323 489999999999999998776
Q ss_pred eC-CCccccc-HHHHHHHHHCCCcee
Q 009316 149 PG-YGFLAEN-AVFVEMCREHGINFI 172 (537)
Q Consensus 149 pg-~g~lsE~-~~~a~~~e~~Gl~~i 172 (537)
=. +-|-.+- ....++|++.|++++
T Consensus 72 DATHPyAa~iS~Na~~aake~gipy~ 97 (257)
T COG2099 72 DATHPYAARISQNAARAAKETGIPYL 97 (257)
T ss_pred ECCChHHHHHHHHHHHHHHHhCCcEE
Confidence 32 1122221 235577788888765
No 118
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.15 E-value=0.35 Score=49.53 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=70.8
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+||||.| .|.++.++++.+.+.|++|+++..+...........-+.+. .+..|.+.+.++.+ ++|+|+-.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~-------~Dl~d~~~l~~al~--g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVY-------GDLSLPETLPPSFK--GVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEE-------CCCCCHHHHHHHHC--CCCEEEEC
Confidence 3799999 59999999999999999999886543221100011112222 14567777766663 68887643
Q ss_pred CCcccc--------c----HHHHHHHHHCCC-ceeCCCH---H---HHHHhcCHHHHHHHHHHcCCCC
Q 009316 151 YGFLAE--------N----AVFVEMCREHGI-NFIGPNP---D---SIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~lsE--------~----~~~a~~~e~~Gl-~~iGp~~---~---~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
.+.... + ..+.+++++.|+ .|+--|. + .......|..+.+.+++.|++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~ 139 (317)
T CHL00194 72 STSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPY 139 (317)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCe
Confidence 221111 1 235677778886 3332121 0 1123345778888888888775
No 119
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.15 Score=55.09 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=49.9
Q ss_pred CCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhc-CCCcEEEEecccCCc-------EEEEEEEEeCCCCEEE
Q 009316 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQNPR-------HIEFQVLADKYGNVVH 292 (537)
Q Consensus 221 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~-g~~~vlvEe~I~g~~-------ei~v~v~~d~~G~vv~ 292 (537)
....|+||....-|+|++++++.+++...+...... ... .+..+.+++||+.+- .+...++....-..+.
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~ 276 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLL 276 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccc--ccccccccceeeeeccCccccCCceeeeeEEEEeecccchhh
Confidence 467999999999999999999999999887542211 111 146788899987632 3355555544434444
Q ss_pred Eeeee
Q 009316 293 FGERD 297 (537)
Q Consensus 293 ~~~r~ 297 (537)
+..|+
T Consensus 277 y~yre 281 (497)
T KOG2157|consen 277 YRYRE 281 (497)
T ss_pred eeecc
Confidence 44333
No 120
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.58 E-value=0.23 Score=51.20 Aligned_cols=159 Identities=19% Similarity=0.146 Sum_probs=94.5
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 68 ~~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
-.+-++|+|.|.|-.+...++-|+.+|.+|++++...+......++ ||..+.- .|.+.+. ..++. +|+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~---------~~~~~~~-~~~~~-~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINS---------SDSDALE-AVKEI-ADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEc---------CCchhhH-HhHhh-CcE
Confidence 3456899999999999999999999999999998888877777888 6666641 1222222 22222 999
Q ss_pred EEeCCCcccccHHHHHHHHHCCC-ceeCCCH-HHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCC-c
Q 009316 147 LHPGYGFLAENAVFVEMCREHGI-NFIGPNP-DSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-P 223 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl-~~iGp~~-~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~-P 223 (537)
|+-.-+ -.......+.+...|. .++|... ..+. .-..+.-+++ ++.+.-+......+.+++.+|+.+.+. |
T Consensus 233 ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~---~~~~~~li~~--~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp 306 (339)
T COG1064 233 IIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIP---LLPAFLLILK--EISIVGSLVGTRADLEEALDFAAEGKIKP 306 (339)
T ss_pred EEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccC---CCCHHHhhhc--CeEEEEEecCCHHHHHHHHHHHHhCCcee
Confidence 987654 2222345566666664 4456542 1111 0111112222 233322211223455667777766553 2
Q ss_pred EEEeecCCCCCcceEEeCCHHHHHHHHHHHHH
Q 009316 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKS 255 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~ 255 (537)
.+. .....+|+.++++++.+
T Consensus 307 ~i~------------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 307 EIL------------ETIPLDEINEAYERMEK 326 (339)
T ss_pred eEE------------eeECHHHHHHHHHHHHc
Confidence 221 24578889999988764
No 121
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.02 E-value=0.21 Score=52.51 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=79.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhhcc---CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLA---DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~G-i~~v~v~~~~d~~~~~~~~a---d~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
|++|||+|.|.++..++..|.+.| .++.+.+...+......... =+...+ +-.|.+++.++.++. |+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~v-------D~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQV-------DAADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEe-------cccChHHHHHHHhcC--CE
Confidence 578999999999999999999998 88888754433222221221 123334 357888999999775 88
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
|+-.-.+. -+..+.++|.+.|+.++=.+... .+.+..++.++++|+-..+.
T Consensus 72 VIn~~p~~-~~~~i~ka~i~~gv~yvDts~~~----~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 72 VINAAPPF-VDLTILKACIKTGVDYVDTSYYE----EPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred EEEeCCch-hhHHHHHHHHHhCCCEEEcccCC----chhhhhhHHHHHcCeEEEcc
Confidence 77543221 23478899999999887322111 11367788899999877665
No 122
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.88 E-value=0.49 Score=45.94 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=79.2
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC-chh-hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 74 ILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHV-KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 74 iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~-~~~-~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
|+|+|. |.++..+++++.+.|++|.++..+.+... ... ..-.+.+.. +|.|.+.|.++.+ ++|.|+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~-------d~~~~~~l~~al~--g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEA-------DYDDPESLVAALK--GVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES--------TT-HHHHHHHHT--TCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeec-------ccCCHHHHHHHHc--CCceEEee
Confidence 789995 99999999999999999999976552211 111 122344543 5889999988885 79998876
Q ss_pred CCccccc-----HHHHHHHHHCCCceeCC-----CH-------HHHHHhcCHHHHHHHHHHcCCCC
Q 009316 151 YGFLAEN-----AVFVEMCREHGINFIGP-----NP-------DSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~lsE~-----~~~a~~~e~~Gl~~iGp-----~~-------~~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
.+...+. ..+.+++.+.|+.++-| .. -....+..|....+.+++.|++.
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 6543222 35778888888864421 11 13556678889999999998875
No 123
>PLN00016 RNA-binding protein; Provisional
Probab=93.76 E-value=0.49 Score=49.75 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=59.9
Q ss_pred CCCCCCCCEEEEE----c-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCch-----h---hcc---CEEEEcCCCCCCCC
Q 009316 65 LKVTCRQEKILVA----N-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-----V---KLA---DESVCIGEAPSSQS 128 (537)
Q Consensus 65 ~~~~~~~~~iLI~----~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~-----~---~~a---d~~~~i~~~~~~~s 128 (537)
.....++++|||+ | .|.++..+++.+.+.|++|+++.......... . .+. -+.+
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v---------- 115 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTV---------- 115 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEE----------
Confidence 3445567899999 7 48899999999999999999987544321100 0 000 1111
Q ss_pred CCCHHHHHHHHHHcCCCEEEeCCCcccc-cHHHHHHHHHCCC-ceeCCC
Q 009316 129 YLLIPNVLSAAISRGCTMLHPGYGFLAE-NAVFVEMCREHGI-NFIGPN 175 (537)
Q Consensus 129 y~~~~~i~~~a~~~~~d~V~pg~g~lsE-~~~~a~~~e~~Gl-~~iGp~ 175 (537)
..|...+.++....++|+|+-..+...+ ...+.+++++.|+ .|+-.+
T Consensus 116 ~~D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 116 WGDPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred EecHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1234444444444679988855432111 1345677777887 455433
No 124
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=93.52 E-value=0.51 Score=46.78 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=58.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEE-EecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVA-VYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~-v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
|+|||+|+..=++.+++.+.+.|+ +++ +.++--............+.+| .+.+.+.+.++++++++++|+=.
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G------~lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG------RLGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC------CCCCHHHHHHHHHhCCCcEEEEC
Confidence 689999999999999999999998 332 2211111111111112234454 24499999999999999887622
Q ss_pred -CCccccc-HHHHHHHHHCCCcee
Q 009316 151 -YGFLAEN-AVFVEMCREHGINFI 172 (537)
Q Consensus 151 -~g~lsE~-~~~a~~~e~~Gl~~i 172 (537)
+-|-.+. ....++|++.|++++
T Consensus 74 THPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 74 THPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCchHHHHHHHHHHHHhhcCcceE
Confidence 2233232 234566777777665
No 125
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=93.22 E-value=0.4 Score=48.89 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=59.4
Q ss_pred HHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCC-cEEEeecCCCCCc-----------ceEEeCCHHHH
Q 009316 179 IRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMIKATAGGGGR-----------GMRLAKEPDEF 246 (537)
Q Consensus 179 i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~-PvvvKp~~g~gg~-----------Gv~~v~~~~el 246 (537)
..+..+-+...+++++.|+.+|++ .+..|+|++.++++++|- -+|||+-.-.||+ ||.+|.+++|.
T Consensus 21 r~L~~hey~~~~ll~~~Gv~vp~g--~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Ea 98 (434)
T KOG2799|consen 21 RSLGIHEYRSAALLRKYGINVPLG--YVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEA 98 (434)
T ss_pred hhhhHHHHHHHHHHHHcCCCCCCC--cccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHH
Confidence 334445566688999999999999 678999999999999974 5999997655554 48999999998
Q ss_pred HHHHHHHH
Q 009316 247 VKLLQQAK 254 (537)
Q Consensus 247 ~~~~~~~~ 254 (537)
++.-.++.
T Consensus 99 k~va~qmi 106 (434)
T KOG2799|consen 99 KAVASQMI 106 (434)
T ss_pred HHHHHHhh
Confidence 88777654
No 126
>PRK05849 hypothetical protein; Provisional
Probab=93.02 E-value=5.6 Score=45.85 Aligned_cols=171 Identities=10% Similarity=0.181 Sum_probs=101.5
Q ss_pred HhcCHHHHHHHHHH--cCCCCCCCCCcCC----CCHHHHHHHHHhc--CCcEEEeecCCC------CCcceE--E--eCC
Q 009316 181 IMGDKSTARETMKN--AGVPTVPGSDGLL----QSTEEAVKLADEL--GFPVMIKATAGG------GGRGMR--L--AKE 242 (537)
Q Consensus 181 ~~~dK~~~r~~l~~--~Gvpvp~~~~~~v----~~~~~~~~~~~~i--g~PvvvKp~~g~------gg~Gv~--~--v~~ 242 (537)
.++.|...-..|+. .|.++|+.+.... ++.+.+.+..... +-|++|..+.-+ ..-|.+ + |..
T Consensus 7 ~~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 7 FFQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred ccchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 45667777788888 8999999842211 2344444433332 468999976532 233332 2 333
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEE-E---------------eCCCCEEEEeeeeeeecccc
Q 009316 243 --PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVL-A---------------DKYGNVVHFGERDCSIQRRN 304 (537)
Q Consensus 243 --~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~-~---------------d~~G~vv~~~~r~~s~~~~~ 304 (537)
.++|..+++.+...- ....+..|+||+.|.+ ...+=.++ . .+.|.-+.-+.+. ..
T Consensus 87 ~~~~~L~~AI~~V~aS~-~~~~~~aVlVQ~MV~~-~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t-----~~ 159 (783)
T PRK05849 87 DSKDQLLKAIEKVIASY-GTSKDDEILVQPMLED-IVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGG-----SA 159 (783)
T ss_pred CcHHHHHHHHHHHHHhh-CCCCCCeEEEEeCccC-CCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCC-----CC
Confidence 348999998887542 1134568999999974 11111111 1 2222222222211 01
Q ss_pred ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEe
Q 009316 305 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMN 359 (537)
Q Consensus 305 ~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN 359 (537)
+.+......+.++++...++.+.+.++-+.+|. -+--|||-+|++|++|+|-+=
T Consensus 160 ~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIEfaid~~g~L~lLQ~R 213 (783)
T PRK05849 160 TTVYHYRDALVFKPPRLKKLIELIRELEALFGC-DFLDIEFAIDEKEELYILQVR 213 (783)
T ss_pred ceeeeccccccCCHHHHHHHHHHHHHHHHHcCC-CCeeeEEEEccCCEEEEEEcc
Confidence 112211112347788889999999999888875 378899999888999999863
No 127
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.80 E-value=0.14 Score=57.56 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=75.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
..+|+|+|.|..+..+++.+++.|+++++++.+++.-....+ .+..+..| +.. .+++++.+.-.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~G------Dat-~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYG------DAT-QLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEe------eCC-CHHHHHhcCCccCCEEEEE
Confidence 367999999999999999999999999999766654333333 23334444 222 3345555655678888876
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV 200 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp 200 (537)
.+-..+|......+++. .|....+.+++|....+ .++++|+...
T Consensus 472 ~~d~~~n~~i~~~~r~~-----~p~~~IiaRa~~~~~~~-~L~~~Ga~~v 515 (601)
T PRK03659 472 CNEPEDTMKIVELCQQH-----FPHLHILARARGRVEAH-ELLQAGVTQF 515 (601)
T ss_pred eCCHHHHHHHHHHHHHH-----CCCCeEEEEeCCHHHHH-HHHhCCCCEE
Confidence 65433333333444443 35556667778877666 4667887753
No 128
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.81 Score=48.89 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=45.9
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHhcC-CcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccC
Q 009316 197 VPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274 (537)
Q Consensus 197 vpvp~~~~~~v~~~~~~~~~~~~ig-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g 274 (537)
++.-|.+..+..+.+++.+..++.. -=+||||....-|.|+++++...++.. +.+++||+||+.
T Consensus 280 f~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yieR 344 (662)
T KOG2156|consen 280 FGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIER 344 (662)
T ss_pred cCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhhc
Confidence 4443333366788888888776532 228899999999999999998877653 356677777765
No 129
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.63 E-value=0.33 Score=47.36 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=69.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh--ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK--LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~--~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
|+++|+|.|..+..+++.+.+.|+.+++++.+.+....... +....+ .+ +-.+.+.+.++ --.++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v-~g------d~t~~~~L~~a-gi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVV-IG------DATDEDVLEEA-GIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEE-Ee------cCCCHHHHHhc-CCCcCCEEEE
Confidence 58999999999999999999999999999765554333222 333333 33 23444555444 3356899988
Q ss_pred CCCcccccHHHHHHHHH-CCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 150 GYGFLAENAVFVEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~-~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
..|---.|.-++.+..+ +|++ ..+.+..|+...+ .+++.|
T Consensus 73 ~t~~d~~N~i~~~la~~~~gv~------~viar~~~~~~~~-~~~~~g 113 (225)
T COG0569 73 ATGNDEVNSVLALLALKEFGVP------RVIARARNPEHEK-VLEKLG 113 (225)
T ss_pred eeCCCHHHHHHHHHHHHhcCCC------cEEEEecCHHHHH-HHHHcC
Confidence 77654444444444433 5554 3355666666555 466666
No 130
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.56 E-value=3.1 Score=44.03 Aligned_cols=75 Identities=19% Similarity=0.089 Sum_probs=50.5
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC----c--hh-hcc-CEEEEcCCCCCCCCCCCHHHHHHHH
Q 009316 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA----L--HV-KLA-DESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 69 ~~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~----~--~~-~~a-d~~~~i~~~~~~~sy~~~~~i~~~a 139 (537)
...++|||.|. |.++..+++.+.+.|++++++..+.+... . .. ... -+.+.. +..|.+.+.+++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~-------Dl~d~~~l~~~~ 130 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG-------DVTDADSLRKVL 130 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEe-------eCCCHHHHHHHH
Confidence 34578999995 99999999999999999998865443211 0 00 011 122322 467788888888
Q ss_pred HHc--CCCEEEeC
Q 009316 140 ISR--GCTMLHPG 150 (537)
Q Consensus 140 ~~~--~~d~V~pg 150 (537)
+.. ++|.|+-.
T Consensus 131 ~~~~~~~D~Vi~~ 143 (390)
T PLN02657 131 FSEGDPVDVVVSC 143 (390)
T ss_pred HHhCCCCcEEEEC
Confidence 765 69998754
No 131
>PRK04148 hypothetical protein; Provisional
Probab=92.54 E-value=0.28 Score=43.69 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=50.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCC-------------------chhhccCEEEEcCCCCCCCCCCCH
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-------------------LHVKLADESVCIGEAPSSQSYLLI 132 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~-------------------~~~~~ad~~~~i~~~~~~~sy~~~ 132 (537)
+|+|++|-| .+..++..+.++|++|++++.+++... ...+-+|-.+.+-|++ .-.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~-----el~ 91 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR-----DLQ 91 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH-----HHH
Confidence 689999999 777889999999999999976554211 1112244444443322 124
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 009316 133 PNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 133 ~~i~~~a~~~~~d~V~pg 150 (537)
..|+++|++.++|.++-.
T Consensus 92 ~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 92 PFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 568889999999988744
No 132
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=92.47 E-value=9.4 Score=38.91 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCcEEEeecCCCC-------CcceEEeCCHHHHHHHHHHHH---HHHHHhcC------------CCcEEE
Q 009316 211 EEAVKLADELGFPVMIKATAGGG-------GRGMRLAKEPDEFVKLLQQAK---SEAAAAFG------------NDGVYL 268 (537)
Q Consensus 211 ~~~~~~~~~ig~PvvvKp~~g~g-------g~Gv~~v~~~~el~~~~~~~~---~~~~~~~g------------~~~vlv 268 (537)
+++.++.+++|.-|+.|-...+- ..+...|.+..|+.-.+..-. ..-...|. ...+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 45677788899889999877662 233457888887766554311 11111111 246788
Q ss_pred EecccCCcEEEEEEEEeCCCCEEEEeeeeeeeccccceeEEEcCCC-CCCHHHHHHHHHHH-HHHHHHcCCcceeEEEEE
Q 009316 269 EKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSP-ALTPELRKAMGDAA-VAAAASIGYIGVGTVEFL 346 (537)
Q Consensus 269 Ee~I~g~~ei~v~v~~d~~G~vv~~~~r~~s~~~~~~k~~e~~P~~-~l~~~~~~~l~~~a-~~~~~alg~~G~~~vEf~ 346 (537)
-+|..-....|+-++.- +++++.+..|++. . .+.. ...+.+++.|.+.. ..+...+.+... .+|+.
T Consensus 155 rkw~~l~p~~EFRcFV~-~~~LiaISQr~~~---~-------~~~L~~~~~~I~~~I~~F~~~~I~~~~~~~~~-v~DVy 222 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR-NRKLIAISQRDLN---Y-------YDFLEELKEEIRSKIQEFFEEHIKPKFPLDNY-VFDVY 222 (299)
T ss_pred eccccCCccceEEEEEE-CCEEEEEeccccc---c-------cHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCE-EEEEE
Confidence 88886544445555543 5588888766541 1 1110 02344555555555 234455655444 59999
Q ss_pred EeCC-CCeEEEEEeccCC
Q 009316 347 LDER-GSFYFMEMNTRIQ 363 (537)
Q Consensus 347 ~~~~-g~~~~lEiN~R~~ 363 (537)
++.+ +++++||+||=-.
T Consensus 223 i~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 223 ITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred EcCCCCeEEEEEecCCcc
Confidence 9866 7899999999764
No 133
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.19 E-value=0.98 Score=53.39 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHc-CCc------------EEEEecCCCCCCchhhccC-----EEEEcCCCCCCCCCCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEM-GIP------------CVAVYSTIDKDALHVKLAD-----ESVCIGEAPSSQSYLL 131 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~-Gi~------------~v~v~~~~d~~~~~~~~ad-----~~~~i~~~~~~~sy~~ 131 (537)
.+++|+|+|.|.++..+++.+.+. +++ .++|. +.+... ...+++ +.+.+ ++.|
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~-a~~la~~~~~~~~v~l-------Dv~D 638 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKD-AKETVEGIENAEAVQL-------DVSD 638 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHH-HHHHHHhcCCCceEEe-------ecCC
Confidence 368999999999999999999775 333 23332 222111 112222 12333 3678
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHH
Q 009316 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE 211 (537)
Q Consensus 132 ~~~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~ 211 (537)
.+.+.++++. +|+|+....+ .-+..++++|.++|..++--+ .. ..+-..+.+.++++|+...+.. ......+
T Consensus 639 ~e~L~~~v~~--~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek-y~---~~e~~~L~e~Ak~AGV~~m~e~-GlDPGid 710 (1042)
T PLN02819 639 SESLLKYVSQ--VDVVISLLPA-SCHAVVAKACIELKKHLVTAS-YV---SEEMSALDSKAKEAGITILCEM-GLDPGID 710 (1042)
T ss_pred HHHHHHhhcC--CCEEEECCCc-hhhHHHHHHHHHcCCCEEECc-CC---HHHHHHHHHHHHHcCCEEEECC-ccCHHHH
Confidence 8888887754 9999876443 246789999999999987544 11 1222456677889999987763 2223334
Q ss_pred H--HHHHHHhc----CCcEEEeecCCC--------CCcceEEeCCHHHHHHHH
Q 009316 212 E--AVKLADEL----GFPVMIKATAGG--------GGRGMRLAKEPDEFVKLL 250 (537)
Q Consensus 212 ~--~~~~~~~i----g~PvvvKp~~g~--------gg~Gv~~v~~~~el~~~~ 250 (537)
. +.+.+++. |-...++...|+ .-.+-.+..|++.+...+
T Consensus 711 ~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~ 763 (1042)
T PLN02819 711 HMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAG 763 (1042)
T ss_pred HHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHh
Confidence 4 34445444 766777766665 223444566777666544
No 134
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.94 E-value=1.2 Score=44.05 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=31.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
-.+++|.|+|.++..+++-|+.+|++|+++++.++
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999975544
No 135
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.65 E-value=0.12 Score=44.41 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=64.2
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009316 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 74 iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~ 153 (537)
|+|+|.|..+..+++.+++.++++++++.+++........-...+. | +..+.+.+.++ .-.+++.++...+-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~-g------d~~~~~~l~~a-~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIY-G------DATDPEVLERA-GIEKADAVVILTDD 72 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEE-S-------TTSHHHHHHT-TGGCESEEEEESSS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccccc-c------cchhhhHHhhc-CccccCEEEEccCC
Confidence 6899999999999999999888999997655432222222233343 3 34555555544 44578888876654
Q ss_pred ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCC
Q 009316 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 154 lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
..+|...+..+++.+ |....+..+.|... .+.+++.|+..
T Consensus 73 d~~n~~~~~~~r~~~-----~~~~ii~~~~~~~~-~~~l~~~g~d~ 112 (116)
T PF02254_consen 73 DEENLLIALLARELN-----PDIRIIARVNDPEN-AELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHHHHHT-----TTSEEEEEESSHHH-HHHHHHTT-SE
T ss_pred HHHHHHHHHHHHHHC-----CCCeEEEEECCHHH-HHHHHHCCcCE
Confidence 444555555555421 12222233344443 44556677653
No 136
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.60 E-value=0.62 Score=44.77 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.++|||+|+|..|.+-++.+.+.|.+++++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 37899999999999999999999999988853
No 137
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.51 E-value=0.84 Score=45.99 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=51.8
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhcc-CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~a-d~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
++|||.| .|.|+...+..+.+.|+++++++.-.......+.-. -+.+ .+ +-.|.+.+-++..++++|+|+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~-~g------Di~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFY-EG------DLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceE-Ee------ccccHHHHHHHHHhcCCCEEE
Confidence 5799998 699999999999999999999964333322222221 1233 33 578888999999999999987
No 138
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.44 E-value=0.28 Score=55.26 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=82.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.++|+|+|.|..+..+++.+++.|+++++++.+++.-....+. +..+..| +-.+. ++++.+.-.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~G------Dat~~-~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-GMKVFYG------DATRM-DLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-CCeEEEE------eCCCH-HHHHhcCCCcCCEEEEE
Confidence 4789999999999999999999999999997666543323332 3334444 12233 45555555678888876
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCC-HHHHHHHHHhcCCc
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS-TEEAVKLADELGFP 223 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~-~~~~~~~~~~ig~P 223 (537)
.+-...|......++++ .|+...+.+.+|..... .+++.|+..+.. ....+ ..-.....+.+|.|
T Consensus 472 ~~d~~~n~~i~~~ar~~-----~p~~~iiaRa~d~~~~~-~L~~~Gad~v~~--e~~e~sl~l~~~~L~~lg~~ 537 (621)
T PRK03562 472 IDDPQTSLQLVELVKEH-----FPHLQIIARARDVDHYI-RLRQAGVEKPER--ETFEGALKSGRLVLESLGLG 537 (621)
T ss_pred eCCHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHHH-HHHHCCCCEEeh--hhHhHHHHHHHHHHHHcCCC
Confidence 64332333444444443 24445566777776655 467788776532 12222 22233445566654
No 139
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.35 E-value=1.2 Score=41.62 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=49.1
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+||-|+| .|..+.+|++.|.+.|++|+++..++...... +.+++ ...+..+.+.+.+.. .+.|+|+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-----~~~~i----~q~Difd~~~~a~~l--~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-----QGVTI----LQKDIFDLTSLASDL--AGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-----cccee----ecccccChhhhHhhh--cCCceEEEe
Confidence 4677777 68899999999999999999997655433211 11211 112345566664444 679999999
Q ss_pred CCcc
Q 009316 151 YGFL 154 (537)
Q Consensus 151 ~g~l 154 (537)
+|+.
T Consensus 70 ~~~~ 73 (211)
T COG2910 70 FGAG 73 (211)
T ss_pred ccCC
Confidence 8876
No 140
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.31 E-value=0.44 Score=52.97 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=75.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
..+++|+|.|..+..+++.+++.|+++++++.+++......+. +..+..+ +..+ +++++.+.-.++|+++-.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-g~~~i~G------D~~~-~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-GIRAVLG------NAAN-EEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCeEEEc------CCCC-HHHHHhcCccccCEEEEE
Confidence 4789999999999999999999999999997665543333332 3333343 2334 344555555678877754
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCc
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP 223 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~P 223 (537)
.+...+|......+.+. .|....+.+..|... .+.+++.|+... .....+-+.+..+.+..|
T Consensus 489 ~~~~~~~~~iv~~~~~~-----~~~~~iiar~~~~~~-~~~l~~~Gad~v-----v~p~~~~a~~i~~~l~~~ 550 (558)
T PRK10669 489 IPNGYEAGEIVASAREK-----RPDIEIIARAHYDDE-VAYITERGANQV-----VMGEREIARTMLELLETP 550 (558)
T ss_pred cCChHHHHHHHHHHHHH-----CCCCeEEEEECCHHH-HHHHHHcCCCEE-----EChHHHHHHHHHHHhcCC
Confidence 43222333232223222 123333445556543 345677887643 111223344555555554
No 141
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=90.61 E-value=0.13 Score=56.97 Aligned_cols=185 Identities=12% Similarity=0.181 Sum_probs=100.7
Q ss_pred HHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCC---HHHHHHHHH----------hcCCcEEEeecCC
Q 009316 165 REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS---TEEAVKLAD----------ELGFPVMIKATAG 231 (537)
Q Consensus 165 e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~---~~~~~~~~~----------~ig~PvvvKp~~g 231 (537)
.++.-||+-++..--..+.|+-...++|+..||++|.+ ..++. .++...+.+ .+.-|+|=||+.|
T Consensus 111 ~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRy--a~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~ 188 (1018)
T KOG1057|consen 111 AKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRY--AILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA 188 (1018)
T ss_pred HHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCcee--EeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc
Confidence 34445777788888999999999999999999999987 33321 122222222 2456999999876
Q ss_pred CCCcceEEeCC---HHHHHHHHHHHHHHHHH------hcCCCcEEEEecccC-CcEEEEEEEEeCCCCEEEEeee-----
Q 009316 232 GGGRGMRLAKE---PDEFVKLLQQAKSEAAA------AFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGER----- 296 (537)
Q Consensus 232 ~gg~Gv~~v~~---~~el~~~~~~~~~~~~~------~~g~~~vlvEe~I~g-~~ei~v~v~~d~~G~vv~~~~r----- 296 (537)
-. ..|++..- -.--++.|.++-+.+-. -...+.++-|+|++- +.++-|-.++- +..|.-.|
T Consensus 189 ED-HNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp---~YaHAEaRKSPvv 264 (1018)
T KOG1057|consen 189 ED-HNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGP---DYAHAEARKSPVV 264 (1018)
T ss_pred cc-ccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCc---chhhhhhccCccc
Confidence 41 11111100 00011122222111000 001368999999985 35555554432 12222222
Q ss_pred eeeeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEeccC
Q 009316 297 DCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRI 362 (537)
Q Consensus 297 ~~s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN~R~ 362 (537)
|-.+.|+...-.-..|.- |++... ..|.+++-+++- -++.+|++. .+|+=|++.+|.--
T Consensus 265 DGkV~Rns~GKEvRYpv~-Ls~~EK----~iA~KVciAF~Q-~VCGFDLLR-a~G~SYVcDVNGfS 323 (1018)
T KOG1057|consen 265 DGKVERNSDGKEVRYPVI-LNSSEK----QIARKVCIAFKQ-TVCGFDLLR-ANGKSYVCDVNGFS 323 (1018)
T ss_pred cceeeecCCCceeeceee-cChhhH----HHHhHHHhhccc-cccchHHhh-cCCceEEEecccee
Confidence 111222221111123443 665554 567778777764 556678765 56889999999743
No 142
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.55 E-value=1.1 Score=42.96 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
.++|||+|.|++|.+.++.+.+.|.+++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 4789999999999999999999999988884
No 143
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.47 E-value=1.7 Score=40.08 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=48.8
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009316 74 ILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 74 iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g 152 (537)
|+|+|. |.++..+++.+.+.|++++++..++..... ...-.+..+ ++.|.+.+.++.+ ++|+|+-..|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~------d~~d~~~~~~al~--~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQG------DLFDPDSVKAALK--GADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEES------CTTCHHHHHHHHT--TSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---cccccccee------eehhhhhhhhhhh--hcchhhhhhh
Confidence 789995 999999999999999999999755442211 222222222 4778888888775 7999986543
No 144
>PRK06988 putative formyltransferase; Provisional
Probab=89.62 E-value=1.2 Score=45.66 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD 107 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~ 107 (537)
||+||++.|.++.+...++++.+.|+++++|.+.+|..
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~ 38 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNP 38 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 35799999999999999999999999999998877654
No 145
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.48 E-value=0.79 Score=41.02 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=46.2
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009316 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 74 iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~ 153 (537)
++|+|+|..+..+++-++.+|++|++++..++ ....+++..+ ...+.+.+...-..-++|+-.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----~~~~~~~~~~----------~~~~~~~~~~~~~~~t~Vv~th~h 66 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----RFPEADEVIC----------IPPDDILEDLEIDPNTAVVMTHDH 66 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----C-TTSSEEEC----------SHHHHHHHHC-S-TT-EEE--S-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----ccCCCCccEe----------cChHHHHhccCCCCCeEEEEcCCc
Confidence 58999999999999999999999999976644 2234555332 223344333322333455544554
Q ss_pred ccccHHHHHHHHHCCCceeC
Q 009316 154 LAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 154 lsE~~~~a~~~e~~Gl~~iG 173 (537)
..+. ...+.+.+....|+|
T Consensus 67 ~~D~-~~L~~~l~~~~~YiG 85 (136)
T PF13478_consen 67 ELDA-EALEAALASPARYIG 85 (136)
T ss_dssp CCHH-HHHHHHTTSS-SEEE
T ss_pred hhHH-HHHHHHHcCCCCEEE
Confidence 3333 344444444666654
No 146
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=89.16 E-value=2.3 Score=42.47 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=66.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~-Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.||.|+|.|.++..+++.+.+. +++++++................. ...+.+.+.+ ...+|+|+-.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~--------~~~~~d~~~l-----~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEA--------VRVVSSVDAL-----PQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccC--------CeeeCCHHHh-----ccCCCEEEEC
Confidence 5899999999999999999886 677777652211111001111000 1124556554 3569998854
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCC
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvp 198 (537)
.+.. ...+.+..+.+.|.+++--++.++.........++.+++.|..
T Consensus 69 t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 69 AGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 4321 2346667777888887744555443222234466677777765
No 147
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.04 E-value=1.4 Score=40.35 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=28.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
.++|||+|+|+.|.+.++.+.+.|.++++|.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3789999999999999999999999999883
No 148
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=88.96 E-value=0.92 Score=39.42 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhh-------ccC-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CCc
Q 009316 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVK-------LAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGF 153 (537)
Q Consensus 83 a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-------~ad-~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg-~g~ 153 (537)
|..|++++.+.+++++.++-+.+-.-.... ..+ .............-.. ........+|.|+|. +|-
T Consensus 21 a~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~DvvFp~lHG~ 96 (117)
T PF01820_consen 21 ARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISASLI----EKNEQKLEVDVVFPVLHGP 96 (117)
T ss_dssp HHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEEET----TESTTCTTCSEEEEECCST
T ss_pred HHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhcccccccccccccc----ccccccccCCEEEEeccCC
Confidence 788999999999999988765553111100 000 0000000000000000 000004669999998 788
Q ss_pred ccccHHHHHHHHHCCCceeCC
Q 009316 154 LAENAVFVEMCREHGINFIGP 174 (537)
Q Consensus 154 lsE~~~~a~~~e~~Gl~~iGp 174 (537)
..|+..+..+++-+|+|++|+
T Consensus 97 ~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 97 NGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp TTSSSHHHHHHHHTT-EBSSS
T ss_pred CCcccHHHHHHHHcCCCCcCC
Confidence 889999999999999999984
No 149
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=87.95 E-value=1.1 Score=45.17 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=55.9
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
|||||+| .|.++..+.+.+++.|++++.++.. .+ +..|.+.+.++.++.++|+|+=.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~-------dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DL-------DLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS--------TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hc-------CCCCHHHHHHHHHHhCCCeEecc
Confidence 5899999 6999999999999999998888422 12 25678899999888899998855
Q ss_pred CCccc----c-cH------------HHHHHHHHCCCceeCCCHHHH
Q 009316 151 YGFLA----E-NA------------VFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 151 ~g~ls----E-~~------------~~a~~~e~~Gl~~iGp~~~~i 179 (537)
-++.. | ++ .++++|.+.|++++-.|.+.+
T Consensus 59 aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~V 104 (286)
T PF04321_consen 59 AAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYV 104 (286)
T ss_dssp -----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGG
T ss_pred ceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEE
Confidence 43211 1 11 345666667776665554433
No 150
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=87.37 E-value=3.2 Score=44.62 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.||+.|.+.+..+..+++.+.++|++++.+.+....... ..+.++.+. ..|...+.+.+++.++|.++.+
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~~~~~~~~---------~~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QKLPVETVV---------IGDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-HhCCcCcEE---------eCCHHHHHHHHhhcCCCEEEEC
Confidence 488999998889999999999999999988765443322 222222222 2466788888888889999854
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009316 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
.- + ..+.+++|++++
T Consensus 381 s~---~----k~~A~~l~ip~i 395 (432)
T TIGR01285 381 SH---G----RALAQRLALPLV 395 (432)
T ss_pred cc---h----HHHHHHcCCCEE
Confidence 21 1 245567788776
No 151
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=87.13 E-value=1.4 Score=35.10 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=29.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
||+|+|+|.+++.++..++++|.++.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 68999999999999999999999999996544
No 152
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=86.97 E-value=4 Score=43.84 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=56.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh-------ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-------LADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-------~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~ 143 (537)
.+|+.|++....+..+.+.+.++|++++++.++......... ..++.+.+ +..|...+.+++++.+
T Consensus 300 gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~-------~~~d~~e~~~~l~~~~ 372 (429)
T cd03466 300 GRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVIL-------DGADFFDIESYAKELK 372 (429)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEE-------eCCCHHHHHHHHHhcC
Confidence 578999998889999999999999999777644322211111 12333322 1346777788888888
Q ss_pred CCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 144 ~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
+|.++-+. .-...+++.|++++
T Consensus 373 ~dliiG~s-------~~~~~a~~~~ip~~ 394 (429)
T cd03466 373 IDVLIGNS-------YGRRIAEKLGIPLI 394 (429)
T ss_pred CCEEEECc-------hhHHHHHHcCCCEE
Confidence 88887432 12345566777764
No 153
>PRK10537 voltage-gated potassium channel; Provisional
Probab=86.79 E-value=1.8 Score=45.82 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.+.++|+|-|+.+..+++.+++.|++++++..+ ..... ...+..+..| +..+. +.++.+.-.++++|+..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d--~~~~~-~~~g~~vI~G------D~td~-e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL--GLEHR-LPDDADLIPG------DSSDS-AVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc--hhhhh-ccCCCcEEEe------CCCCH-HHHHhcCcccCCEEEEc
Confidence 367999999999999999999999999999643 21111 1112223333 23343 44444444578888876
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCC
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
.+-..+|......+++.+ |+...+..+.|... .+.++++|...
T Consensus 310 t~dD~~Nl~ivL~ar~l~-----p~~kIIa~v~~~~~-~~~L~~~GaD~ 352 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMS-----SDVKTVAAVNDSKN-LEKIKRVHPDM 352 (393)
T ss_pred CCChHHHHHHHHHHHHhC-----CCCcEEEEECCHHH-HHHHHhcCCCE
Confidence 654445544444444432 33344445555544 44567777654
No 154
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.77 E-value=2.9 Score=43.83 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=43.9
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
|+|||.|. |.++..+++.+.+.|++|+++....+..........+.+.. +..+.+.+..+.+ ++|.|+
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~--~~D~Vi 90 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLV-------DLRVMENCLKVTK--GVDHVF 90 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEEC-------CCCCHHHHHHHHh--CCCEEE
Confidence 68999996 99999999999999999999864332111111111233321 3455666665553 588765
No 155
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=86.72 E-value=0.68 Score=39.15 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=50.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.++|||+|.|..|.+=++.+.+.|-++.++..+. ...-...+ ... ..|. +. -.+++.|+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~---~~~-----~~~~--~~------l~~~~lV~~a 67 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQ---LIR-----REFE--ED------LDGADLVFAA 67 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCE---EEE-----SS-G--GG------CTTESEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHH---HHh-----hhHH--HH------HhhheEEEec
Confidence 4789999999999999999999999988886443 00011111 111 1120 00 2357788876
Q ss_pred CCcccccHHHHHHHHHCCCce
Q 009316 151 YGFLAENAVFVEMCREHGINF 171 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~ 171 (537)
.+-...+..+.+.+++.|+++
T Consensus 68 t~d~~~n~~i~~~a~~~~i~v 88 (103)
T PF13241_consen 68 TDDPELNEAIYADARARGILV 88 (103)
T ss_dssp SS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhhCCEEE
Confidence 654444566777777777764
No 156
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=86.70 E-value=3.9 Score=44.02 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~---~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+++.+++ .|++++.+..+.... ....... .-+.+.+++.++++++++|.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~i~g~----------pVlg~~~~l~~~i~~~~id~V 192 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVEVAGL----------PVLGKLDDLVELVRAHRVDEV 192 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCccc--ccccCCC----------cccCCHHHHHHHHHhCCCCEE
Confidence 3679999999999999999875 478888865332111 1111111 124567889999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHCCCce
Q 009316 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (537)
Q Consensus 148 ~pg~g~lsE~--~~~a~~~e~~Gl~~ 171 (537)
+-.....++. .++.+.|++.|+.+
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V 218 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDV 218 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEE
Confidence 7543222221 34566777777754
No 157
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.39 E-value=14 Score=36.13 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=75.0
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
++|||.| .|-++..+++.+.+.|++++++..+++...... ..-.+.. .++.+.+.+...++ ++|.++-.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~------~d~~~~~~l~~a~~--G~~~~~~i 70 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVL------GDLRDPKSLVAGAK--GVDGVLLI 70 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEE------eccCCHhHHHHHhc--cccEEEEE
Confidence 4799999 588999999999999999999977666444333 2222222 35788888888774 56654422
Q ss_pred CCcc-------cc-cHHHHHHHHHCC--Cc------eeCCCH-HHHHHhcCHHHHHHHHHHcCCCC
Q 009316 151 YGFL-------AE-NAVFVEMCREHG--IN------FIGPNP-DSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~l-------sE-~~~~a~~~e~~G--l~------~iGp~~-~~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
.+.. .. .-.+....+..+ .. ..+... ........|....+.+...|++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~ 136 (275)
T COG0702 71 SGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPY 136 (275)
T ss_pred ecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCe
Confidence 2211 11 112233344433 21 234332 44567788999999999999993
No 158
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.01 E-value=2.1 Score=45.96 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=55.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
..++++|+|.|..+..+++.+.+.|+++++++.+++....... ..+..+..+ +..+.+.+.++ .-.++|+|+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~g------d~~~~~~L~~~-~~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHG------DGTDQELLEEE-GIDEADAFI 302 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEEC------CCCCHHHHHhc-CCccCCEEE
Confidence 3689999999999999999999999999999655442221111 112223333 23445444433 335688888
Q ss_pred eCCCcccccHHHHHHHHHCC
Q 009316 149 PGYGFLAENAVFVEMCREHG 168 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~G 168 (537)
...+....|...+..+++.|
T Consensus 303 ~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 303 ALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred ECCCCcHHHHHHHHHHHHhC
Confidence 66543333333333344443
No 159
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=85.91 E-value=17 Score=32.23 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=68.4
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHH
Q 009316 86 VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCR 165 (537)
Q Consensus 86 ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e 165 (537)
|++.|++.|+++++|.+..-.... .... +.+.++.....-+ ..|++.++ .-|.|+. -+-.+|..+-
T Consensus 2 i~~~a~r~~i~vi~Van~~h~~~~-~~~~-~~i~Vd~g~DaaD----~~I~~~~~--~gDiVIT------qDigLA~~~l 67 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANYSHRLPR-SPYV-EMIVVDSGFDAAD----FYIVNHAK--PGDIVIT------QDIGLASLLL 67 (130)
T ss_pred HHHHHHHHCCEEEEEeCCCccCCC-CCCe-EEEEECCCCChHH----HHHHHcCC--CCCEEEE------CCHHHHHHHH
Confidence 688999999999999754322221 1222 4455553222211 25666664 3688885 3456788888
Q ss_pred HCCCceeCCC-----HHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHH
Q 009316 166 EHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 166 ~~Gl~~iGp~-----~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~ 218 (537)
..|...+.|. .+.|..+.+.-.+.+-+++.|..+ .+ ..-.+.++-..|.+
T Consensus 68 ~Kga~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~~~-~g--pk~~~~~d~~~F~~ 122 (130)
T PF02639_consen 68 AKGAYVLNPRGKEYTKENIDELLAMRHLMAKLRRAGKRT-KG--PKKFTKKDRQRFAN 122 (130)
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCC-CC--CCCCCHHHHHHHHH
Confidence 8887777653 556666666556666677788853 22 12234555555544
No 160
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=85.84 E-value=2.5 Score=37.01 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=27.2
Q ss_pred CEEEEEcC-cHHHHHHHHHHHH-cCCcEEEEecC
Q 009316 72 EKILVANR-GEIAVRVIRTAHE-MGIPCVAVYST 103 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~-~Gi~~v~v~~~ 103 (537)
.||+|.|. |..+..+++++.+ -|++++.+...
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence 37999998 9999999999999 78988876533
No 161
>PRK00208 thiG thiazole synthase; Reviewed
Probab=85.64 E-value=14 Score=36.34 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcC-CcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc---CCCEEEeCCCccccc
Q 009316 82 IAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR---GCTMLHPGYGFLAEN 157 (537)
Q Consensus 82 ia~~ii~aa~~~G-i~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~---~~d~V~pg~g~lsE~ 157 (537)
-|+++++-+|+++ ...|=+. .++ .....+.|+...++.++.. +...+ | +.+++
T Consensus 77 eAv~~a~lare~~~~~~iKlE-----------------Vi~--d~~~llpd~~~tv~aa~~L~~~Gf~vl-p---yc~~d 133 (250)
T PRK00208 77 EAVRTARLAREALGTNWIKLE-----------------VIG--DDKTLLPDPIETLKAAEILVKEGFVVL-P---YCTDD 133 (250)
T ss_pred HHHHHHHHHHHHhCCCeEEEE-----------------Eec--CCCCCCcCHHHHHHHHHHHHHCCCEEE-E---EeCCC
Confidence 4788889999975 2222220 111 1111256788899999887 77554 3 23488
Q ss_pred HHHHHHHHHCCCceeCC--CH-HHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCC
Q 009316 158 AVFVEMCREHGINFIGP--NP-DSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234 (537)
Q Consensus 158 ~~~a~~~e~~Gl~~iGp--~~-~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg 234 (537)
+.+++.++++|..++-| ++ -+-.-..|+...+.+.+..++|+.-. .-+.+++++.+..+ +|.--|+ -+
T Consensus 134 ~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve--aGI~tpeda~~Ame-lGAdgVl------V~ 204 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD--AGIGTPSDAAQAME-LGADAVL------LN 204 (250)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe--CCCCCHHHHHHHHH-cCCCEEE------EC
Confidence 99999999999877744 10 11122445677777777678888766 66889999888775 5654332 24
Q ss_pred cceEEeCCHHHHHHHHHHHHHHHHHhcC
Q 009316 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (537)
Q Consensus 235 ~Gv~~v~~~~el~~~~~~~~~~~~~~~g 262 (537)
.++....|+....++|..+...++.+|.
T Consensus 205 SAItka~dP~~ma~af~~Av~aGr~a~~ 232 (250)
T PRK00208 205 TAIAVAGDPVAMARAFKLAVEAGRLAYL 232 (250)
T ss_pred hHhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666778899999999888877665554
No 162
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.41 E-value=10 Score=37.29 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcC-CcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc---CCCEEEeCCCccccc
Q 009316 82 IAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR---GCTMLHPGYGFLAEN 157 (537)
Q Consensus 82 ia~~ii~aa~~~G-i~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~---~~d~V~pg~g~lsE~ 157 (537)
-|+++++-+|+++ ...|=+.-- .|..+ -+.|+.+.++.+++. |.+.+ | +.+++
T Consensus 77 eAv~~a~lare~~~~~~iKlEVi----------~d~~~---------Llpd~~~tv~aa~~L~~~Gf~vl-p---yc~dd 133 (248)
T cd04728 77 EAVRTARLAREALGTDWIKLEVI----------GDDKT---------LLPDPIETLKAAEILVKEGFTVL-P---YCTDD 133 (248)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEe----------cCccc---------cccCHHHHHHHHHHHHHCCCEEE-E---EeCCC
Confidence 3788999999985 222222100 11112 145788888888887 77655 2 23478
Q ss_pred HHHHHHHHHCCCceeCC--CH-HHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCC
Q 009316 158 AVFVEMCREHGINFIGP--NP-DSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234 (537)
Q Consensus 158 ~~~a~~~e~~Gl~~iGp--~~-~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg 234 (537)
+..++.+++.|..++-| ++ .+-.-..|+...+.+.+..++|+.-. .-+.+++++.++.+ +|.--|+ -+
T Consensus 134 ~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e--gGI~tpeda~~Ame-lGAdgVl------V~ 204 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD--AGIGTPSDAAQAME-LGADAVL------LN 204 (248)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe--CCCCCHHHHHHHHH-cCCCEEE------EC
Confidence 99999999999877744 11 11122345777777777678888766 66889999887775 6653332 24
Q ss_pred cceEEeCCHHHHHHHHHHHHHHHHHhcC
Q 009316 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (537)
Q Consensus 235 ~Gv~~v~~~~el~~~~~~~~~~~~~~~g 262 (537)
.++....|+....++|..+...++.+|.
T Consensus 205 SAIt~a~dP~~ma~af~~Av~aGr~a~~ 232 (248)
T cd04728 205 TAIAKAKDPVAMARAFKLAVEAGRLAYL 232 (248)
T ss_pred hHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566778899999999888877766554
No 163
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=85.06 E-value=6 Score=39.01 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCc-EEEeecCCCCCc--c---------eEEeCCHHHHHHHHHH
Q 009316 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGR--G---------MRLAKEPDEFVKLLQQ 252 (537)
Q Consensus 185 K~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~P-vvvKp~~g~gg~--G---------v~~v~~~~el~~~~~~ 252 (537)
...++++|+++|+.+-.+ .+.++..++.+.+.+++-| .|+|+---.||+ | |.+-.+.+...+..++
T Consensus 24 EfQSK~~l~k~Gv~vQ~F--~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRF--FVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HhhhHHHHHhcCeeEEEE--EEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 356788999999999887 5667777888888888876 899996544444 3 6677888888888777
Q ss_pred HHHHHHHh--cCC-----CcEEEEecccCCcEEEEEEEEeC--CCCEEE
Q 009316 253 AKSEAAAA--FGN-----DGVYLEKYVQNPRHIEFQVLADK--YGNVVH 292 (537)
Q Consensus 253 ~~~~~~~~--~g~-----~~vlvEe~I~g~~ei~v~v~~d~--~G~vv~ 292 (537)
+......- -.. ..+++-+-++-.||--+.++.|+ +|.|+.
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlv 150 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLV 150 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEE
Confidence 65432210 011 25666666666677666666665 345543
No 164
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.91 E-value=5.6 Score=42.77 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh-ccCEE--EEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADES--VCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-~ad~~--~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.+||+|+|=|..++.+++.+++.|.++++.+..++....... ...+. +..+ ..+. -....+|.|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g-------~~~~------~~~~~~d~v 73 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELG-------SHDD------EDLAEFDLV 73 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecC-------ccch------hccccCCEE
Confidence 789999999999999999999999999998655554211111 11111 2222 1111 112458899
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeC
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iG 173 (537)
+...|.-..++ ..+.+++.|++++|
T Consensus 74 V~SPGi~~~~p-~v~~A~~~gi~i~~ 98 (448)
T COG0771 74 VKSPGIPPTHP-LVEAAKAAGIEIIG 98 (448)
T ss_pred EECCCCCCCCH-HHHHHHHcCCcEEe
Confidence 88877765665 55667888999886
No 165
>PLN02572 UDP-sulfoquinovose synthase
Probab=84.65 E-value=8.3 Score=41.59 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009316 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
.++++|||.|+ |.++..+++.+.+.|+++++++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 34578999995 9999999999999999999885
No 166
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=84.58 E-value=7.1 Score=38.93 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=45.8
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH----cC-CCE
Q 009316 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----RG-CTM 146 (537)
Q Consensus 73 ~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~----~~-~d~ 146 (537)
+|||.|. |.++..+++.+.+.|+++.++..+++.... ..-+.+. -++.|.+.+.++.+. .+ +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~-------~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVK-------FDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCcccc-------ccCCCHHHHHHHHhcccCcCCceeE
Confidence 4899995 999999999999999999998765543211 1111121 257888888777642 35 787
Q ss_pred EE
Q 009316 147 LH 148 (537)
Q Consensus 147 V~ 148 (537)
|+
T Consensus 71 v~ 72 (285)
T TIGR03649 71 VY 72 (285)
T ss_pred EE
Confidence 76
No 167
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=84.37 E-value=8.6 Score=37.00 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=55.9
Q ss_pred CCEEEEEcCcHHHHHHHHH--HHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRT--AHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~a--a~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|+|+|.|.++..+++. ....|++++++... ++......... +.+ ...+.+.+++++.++|.|+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~-d~~~~~~~i~g--~~v---------~~~~~l~~li~~~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV-DPEKIGTKIGG--IPV---------YHIDELEEVVKENDIEIGI 151 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC-ChhhcCCEeCC--eEE---------cCHHHHHHHHHHCCCCEEE
Confidence 4689999999999998886 34679999987643 32211111111 111 2356778888888999888
Q ss_pred eCCCcccccHHHHHHHHHCCCcee
Q 009316 149 PGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
-..... ...+..+.+.+.|+..+
T Consensus 152 Ia~P~~-~~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 152 LTVPAE-AAQEVADRLVEAGIKGI 174 (213)
T ss_pred EeCCch-hHHHHHHHHHHcCCCEE
Confidence 554221 22455666777776544
No 168
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=83.77 E-value=4.1 Score=38.99 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=50.8
Q ss_pred EEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccC-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 74 iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
|||+| .|-++..+++.+.+.|+.++.+..............+ +.+.. +..+.+.+.++.+..++|.|+-.-
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-------dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIG-------DLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEES-------ETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEe-------eccccccccccccccCceEEEEee
Confidence 78999 6999999999999999998877644433322211112 23332 467899999999988899887443
Q ss_pred C
Q 009316 152 G 152 (537)
Q Consensus 152 g 152 (537)
+
T Consensus 74 ~ 74 (236)
T PF01370_consen 74 A 74 (236)
T ss_dssp S
T ss_pred c
Confidence 3
No 169
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=83.69 E-value=6.6 Score=42.40 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=57.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~---~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+++++++ .|++++.+..+.. ... ..... +. -+.+.+++.+.++++++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~-~~~-~~~~g--vp--------Vlg~~~dl~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRP-DAR-TGVRG--VP--------VLGKLDDLEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCC-ccc-cccCC--CC--------ccCCHHHHHHHHHhcCCCEE
Confidence 4789999999999999999876 4788888653321 111 11111 11 14567889999999999988
Q ss_pred EeCCCcccc--cHHHHHHHHHCCCce
Q 009316 148 HPGYGFLAE--NAVFVEMCREHGINF 171 (537)
Q Consensus 148 ~pg~g~lsE--~~~~a~~~e~~Gl~~ 171 (537)
+-.....+. ..++.+.|++.|+.+
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~V 221 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVDV 221 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCEE
Confidence 754322211 134555667777643
No 170
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=83.68 E-value=3.9 Score=43.85 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=59.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhc---------cCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL---------ADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~---------ad~~~~i~~~~~~~sy~~~~~i~~~a~~ 141 (537)
.||+.|.+....+..+.+.+.++|.+++.+.+..+......++ ..+.+. -.|..++.+.+++
T Consensus 299 gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~d~~el~~~i~~ 369 (428)
T cd01965 299 GKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVF---------VGDLWDLESLAKE 369 (428)
T ss_pred CCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEE---------CCCHHHHHHHhhc
Confidence 5899999988899999999999999998876543322211111 111221 2477888889998
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 142 ~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
.++|.|+.+. .....++++|++++
T Consensus 370 ~~pdliig~~-------~~~~~a~~~~ip~i 393 (428)
T cd01965 370 EPVDLLIGNS-------HGRYLARDLGIPLV 393 (428)
T ss_pred cCCCEEEECc-------hhHHHHHhcCCCEE
Confidence 8999998542 12355667788876
No 171
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.65 E-value=8.4 Score=42.75 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=31.0
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 69 ~~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
++.++|||.|+ |.++..+++.+.+.|++|+++..+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 34578999995 89999999999999999998865443
No 172
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=83.40 E-value=5.9 Score=40.92 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC-CCCC-chh-hc---cC-EEEEcCCCCCCCCCCCHHHHHHHHHHc
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI-DKDA-LHV-KL---AD-ESVCIGEAPSSQSYLLIPNVLSAAISR 142 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~-d~~~-~~~-~~---ad-~~~~i~~~~~~~sy~~~~~i~~~a~~~ 142 (537)
|++|||.|+ |.++..+++.+.+.|++++++.... .... ... .. .+ +.+.. +..|.+.+.++.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~ 73 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKV-------DICDRAELARVFTEH 73 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEEC-------CCcChHHHHHHHhhc
Confidence 478999995 8999999999999999866543221 1110 000 00 01 11221 355677777777777
Q ss_pred CCCEEEeC
Q 009316 143 GCTMLHPG 150 (537)
Q Consensus 143 ~~d~V~pg 150 (537)
++|.|+=.
T Consensus 74 ~~D~Vih~ 81 (355)
T PRK10217 74 QPDCVMHL 81 (355)
T ss_pred CCCEEEEC
Confidence 79987643
No 173
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=83.39 E-value=13 Score=36.90 Aligned_cols=110 Identities=21% Similarity=0.143 Sum_probs=64.8
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcC-CcEEEEecCCCCCC-------------chhh----------ccCEEEEcCCCC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMG-IPCVAVYSTIDKDA-------------LHVK----------LADESVCIGEAP 124 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~G-i~~v~v~~~~d~~~-------------~~~~----------~ad~~~~i~~~~ 124 (537)
++.||.|+|. |..+..+++++.+.. ++.++.....+... ..+. .+|-.+.+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT--- 77 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT--- 77 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC---
Confidence 3578999995 999999999998875 66665432222111 1111 123333221
Q ss_pred CCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHH
Q 009316 125 SSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKS 186 (537)
Q Consensus 125 ~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~ 186 (537)
...-....+++|.+++...|+-+.||..|. ..+.++.++.++.+ .|+...=..+..|.
T Consensus 78 ---~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~-a~NfSiGvnll~~l 136 (266)
T COG0289 78 ---TPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVI-APNFSLGVNLLFKL 136 (266)
T ss_pred ---CchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEE-eccchHHHHHHHHH
Confidence 112234667788888999999889987765 34555556655443 45555444444443
No 174
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=83.31 E-value=3 Score=37.10 Aligned_cols=97 Identities=20% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCEEEEEcCcH----HHHHHHHHHHHcCCcEEEEecCCCC-----CCchhhccCEEEEcCCCCCCCCCCC---HHHHHHH
Q 009316 71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDK-----DALHVKLADESVCIGEAPSSQSYLL---IPNVLSA 138 (537)
Q Consensus 71 ~~~iLI~~~g~----ia~~ii~aa~~~Gi~~v~v~~~~d~-----~~~~~~~ad~~~~i~~~~~~~sy~~---~~~i~~~ 138 (537)
.|+|.++|... .+.++.+.+.+.||+++=|...-+. .-.+.+++|-...++ --+-|.. ...+++-
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~ID---iVdvFR~~e~~~~i~~e 92 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPID---IVDVFRRSEAAPEVARE 92 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCc---EEEEecChhhhHHHHHH
Confidence 58899999654 4899999999999999999542121 011122222110000 0011222 3345555
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 139 a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
+.+.++..+|-..|. +|.+..+.+++.|+.++
T Consensus 93 al~~~~kv~W~QlGi--~n~ea~~~~~~aG~~vV 124 (140)
T COG1832 93 ALEKGAKVVWLQLGI--RNEEAAEKARDAGLDVV 124 (140)
T ss_pred HHhhCCCeEEEecCc--CCHHHHHHHHHhCcHHH
Confidence 556778999988877 56667788888888554
No 175
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.31 E-value=11 Score=36.42 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=21.8
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 74 ILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 74 iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
|+-....+-+..+++++.+-|++++=|+
T Consensus 18 vir~~~~~~a~~~~~al~~~Gi~~iEit 45 (213)
T PRK06552 18 VVRGESKEEALKISLAVIKGGIKAIEVT 45 (213)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 3333456679999999999999998764
No 176
>PRK05993 short chain dehydrogenase; Provisional
Probab=83.24 E-value=4.8 Score=40.05 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
|.+++||.|. |.++..+++.+.+.|++++++..+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4578999996 8899999999999999999886543
No 177
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.24 E-value=15 Score=34.92 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=61.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCE--EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE--SVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~--~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.|+|+|.|-|.++..+++.+.+.|+++++.+.+.+... .+.+. ...+ +.+++.. ..+|.++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~---~~~~~~g~~~v----------~~~~l~~----~~~Dv~v 90 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVA---RAAELFGATVV----------APEEIYS----VDADVFA 90 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH---HHHHHcCCEEE----------cchhhcc----ccCCEEE
Confidence 47899999999999999999999999986633222111 11111 1111 1222222 3699999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
|.-. ++.-..+.+++.+...+.-.. -.-+.| ....++|++.||.+.|-
T Consensus 91 p~A~---~~~I~~~~~~~l~~~~v~~~A--N~~~~~-~~~~~~L~~~Gi~~~Pd 138 (200)
T cd01075 91 PCAL---GGVINDDTIPQLKAKAIAGAA--NNQLAD-PRHGQMLHERGILYAPD 138 (200)
T ss_pred eccc---ccccCHHHHHHcCCCEEEECC--cCccCC-HhHHHHHHHCCCEEeCc
Confidence 8742 222222333444444331110 011122 45677899999999774
No 178
>PRK05693 short chain dehydrogenase; Provisional
Probab=83.23 E-value=4.1 Score=40.37 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
||++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999 4889999999999999999988644
No 179
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.21 E-value=2.9 Score=43.40 Aligned_cols=122 Identities=9% Similarity=0.044 Sum_probs=61.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
-++|||+|.|..+..+++.+-++|+. ++++ |.|.-... .+.-+.+.-. ......-...+...+.+++.+.+.-+-
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lv--D~D~ve~s-NL~RQ~l~~~-~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIA--DRDYVEWS-NLQRQQLYTE-EDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCccccc-ccCccccccH-HHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999995 4556 33321110 0111111100 000000112344445555555444221
Q ss_pred CC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 150 GY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 150 g~-g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
.+ ...+ ...+.+.+...-+.+.+.+.. ..+....+++.+.|+|..-+
T Consensus 100 ~~~~~~~-~~~~~~~~~~~DlVid~~D~~-----~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 100 PVVTDVT-VEELEELVKEVDLIIDATDNF-----DTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred EEeccCC-HHHHHHHhcCCCEEEEcCCCH-----HHHHHHHHHHHHcCCCEEEE
Confidence 11 1111 112344455555555543322 23445667788899987644
No 180
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=83.03 E-value=9.4 Score=37.38 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=29.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
+++|||.| .|.++..+++.+.+.|++++++..+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~ 52 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD 52 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 47899999 499999999999999999988764443
No 181
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=82.95 E-value=9.4 Score=37.16 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=45.3
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~-Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
-.||||.|. |..++.++.-+|.+ |-+.|++. +.-..+.++....-+++. +.+|...+.++...+.+|.++
T Consensus 44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILS-DI~KPp~~V~~~GPyIy~-------DILD~K~L~eIVVn~RIdWL~ 115 (366)
T KOG2774|consen 44 APRVLITGSLGQLGRGLASLLRYMYGSECVILS-DIVKPPANVTDVGPYIYL-------DILDQKSLEEIVVNKRIDWLV 115 (366)
T ss_pred CCeEEEecchHHHhHHHHHHHHHHhCCccEehh-hccCCchhhcccCCchhh-------hhhccccHHHhhcccccceee
Confidence 468999996 88899999888875 88887763 333333333222222222 345666677777778888766
No 182
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=82.92 E-value=6.1 Score=41.21 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=56.0
Q ss_pred CCEEEEEcCcHH-----HHHHHHHHHHcCCcEEEEecCCCCCCchhhc-cCEEEEcCCCCCCC--CC----------CCH
Q 009316 71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQ--SY----------LLI 132 (537)
Q Consensus 71 ~~~iLI~~~g~i-----a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~--sy----------~~~ 132 (537)
||||+|+++|.- |..+++.+++.|+++..+.++.......... --..+.++...... +. ...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 578999998764 7899999999999999997554432211111 11222232111111 10 112
Q ss_pred HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 133 ~~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
-....+.++.++|+|+..-|+.+- ...-+....|++++
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~--p~~~aa~~~~~p~~ 118 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSV--PVVIGGWLNRVPVL 118 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhH--HHHHHHHHcCCCEE
Confidence 234456788999999965444322 12233345566654
No 183
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.90 E-value=15 Score=39.82 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
..++|||+|-|..+..+++.+++ |.++++.+...........+.+..+ ++ ....+.+ .++|.|+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~-------~~~~~~~------~~~d~vV~ 69 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IA-------ALSDSRW------QNLDKIVL 69 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-ec-------cCChhHh------hCCCEEEE
Confidence 35789999999999999999995 9988877522221111011111111 22 0111111 35899988
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~ 178 (537)
..|.-..++.+ +.+.+.|+++++ ..+.
T Consensus 70 SPgI~~~~p~~-~~a~~~gi~v~~-e~el 96 (454)
T PRK01368 70 SPGIPLTHEIV-KIAKNFNIPITS-DIDL 96 (454)
T ss_pred CCCCCCCCHHH-HHHHHCCCceec-HHHH
Confidence 88776556554 455678999884 3443
No 184
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.85 E-value=36 Score=30.77 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccH
Q 009316 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENA 158 (537)
Q Consensus 79 ~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~ 158 (537)
.-++-..|.+.+.++|+++++|.+..-..+ ........+ +++.... --..|++.|+. -|.|+. -+.
T Consensus 10 ACPVk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~-V~~g~Da----aD~~Iv~~a~~--gDlVVT------~Di 75 (150)
T COG1671 10 ACPVKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVV-VDAGFDA----ADDWIVNLAEK--GDLVVT------ADI 75 (150)
T ss_pred CCchHHHHHHHHHHhCCeEEEEeCCCccCC-CCCceeEEE-ecCCcch----HHHHHHHhCCC--CCEEEE------Cch
Confidence 344556788999999999999975544422 223333333 4322211 12367777743 678885 455
Q ss_pred HHHHHHHHCCCceeCCC-----HHHHHHhcCHHHHHHHHHHcCCCC
Q 009316 159 VFVEMCREHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 159 ~~a~~~e~~Gl~~iGp~-----~~~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
.+|..+-..|...++|. .+.|..+.+.......+++.|...
T Consensus 76 ~LA~~ll~kg~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~ 121 (150)
T COG1671 76 PLASLLLDKGAAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKT 121 (150)
T ss_pred HHHHHHHhcCCEEECCCCcccCHhHHHHHHHHHHHHHHHHHhcccc
Confidence 78889999999888775 455555555555555667777763
No 185
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=82.81 E-value=8.5 Score=41.80 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=58.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~---~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+++.+++ +|++++.+..+.. .. . ..+ .-+.+.+++.++++++++|.|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~-~~------g--~~V------pvlG~~~dL~~~v~~~~IdeV 207 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPK-PG------G--VSN------DWAGNLQQLVEDAKAGKIHNV 207 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCc-cc------c--CCC------CcCCCHHHHHHHHHhCCCCEE
Confidence 4679999999999999999876 4889988763321 10 0 001 124578899999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHCCCce
Q 009316 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (537)
Q Consensus 148 ~pg~g~lsE~--~~~a~~~e~~Gl~~ 171 (537)
+-.....++. .++.+.|++.|+.+
T Consensus 208 iIAip~~~~~~l~ell~~~~~~~v~V 233 (463)
T PRK10124 208 YIAMSMCDGARVKKLVRQLADTTCSV 233 (463)
T ss_pred EEeCCCcchHHHHHHHHHHHHcCCeE
Confidence 7654332221 34556777777754
No 186
>PRK08177 short chain dehydrogenase; Provisional
Probab=82.51 E-value=4.6 Score=38.70 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=45.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccC-EEEEcCCCCCCCCCCCHHHH---HHHHHHcCCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNV---LSAAISRGCT 145 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~sy~~~~~i---~~~a~~~~~d 145 (537)
|+++||.| .|.++..+++.+.+.|+++++++.+++.......... ..+.+ +..+.+.+ .+.+...++|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-------D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKL-------DMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEc-------CCCCHHHHHHHHHHhhcCCCC
Confidence 47899999 5889999999999999999988765443211111111 11222 23444444 4444334789
Q ss_pred EEEeCCC
Q 009316 146 MLHPGYG 152 (537)
Q Consensus 146 ~V~pg~g 152 (537)
.|+-.-|
T Consensus 74 ~vi~~ag 80 (225)
T PRK08177 74 LLFVNAG 80 (225)
T ss_pred EEEEcCc
Confidence 8885544
No 187
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=82.25 E-value=5.3 Score=38.85 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=28.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
++|||+|+|.+|.|=++.+.+.|-++.+|..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 6899999999999999999999999998853
No 188
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.20 E-value=6.3 Score=37.84 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=29.1
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEec
Q 009316 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 68 ~~~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.+++++|||.| .|.++..+++.+.+.|++++++..
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 34568999999 588999999999999999877543
No 189
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=82.18 E-value=6 Score=40.05 Aligned_cols=68 Identities=22% Similarity=0.187 Sum_probs=44.9
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
++|||.| .|-++..+++.+.+.|++++++....+.........-+.+. .+..+.+.+.++++ ++|.|+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-------~D~~~~~~l~~~~~--~~d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVE-------GDLRDPASLRKAVA--GCRALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEE-------eeCCCHHHHHHHHh--CCCEEE
Confidence 4799999 59999999999999999999987654332111111112222 24667777777764 578766
No 190
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.11 E-value=3.5 Score=44.34 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=30.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
++|+|+|.|.++..+++.+.+.|+++++++.+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999965443
No 191
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=81.94 E-value=11 Score=37.83 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~--Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
|...||.|+|.|.++..+++.+.+. |++++.++. .+... ...++++. + ....|.+.++++ ..+|+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d-r~~~~-a~~~a~~~---g---~~~~~~~~eell-----~~~D~ 70 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV-RDPQR-HADFIWGL---R---RPPPVVPLDQLA-----THADI 70 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC-CCHHH-HHHHHHhc---C---CCcccCCHHHHh-----cCCCE
Confidence 4457899999999999999999873 888887763 22211 12222221 0 011255677764 24899
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCC--CCCC
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP--TVPG 202 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvp--vp~~ 202 (537)
|+-.... .-..++...+.+.|..++--+..++. +-..+.+.+++.|.+ +|++
T Consensus 71 Vvi~tp~-~~h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~l~v~sG 124 (271)
T PRK13302 71 VVEAAPA-SVLRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQIIVPTG 124 (271)
T ss_pred EEECCCc-HHHHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCEEEEcch
Confidence 8865432 12345666666788877644433332 345677788899887 4555
No 192
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=81.78 E-value=2.5 Score=40.92 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
+.++|+|.|-|..+..+++.+.++|.++|++.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vs 53 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVS 53 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 45899999999999999999999999998875
No 193
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=81.76 E-value=5.2 Score=36.39 Aligned_cols=89 Identities=10% Similarity=0.133 Sum_probs=48.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 72 EKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~---~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
++.++++.+..+..+.+.+++ .|++++.+.++.. ........+..+ ..+.+++.+.++++++|-|+
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~-~~~~~~~~~~~~----------lg~~~~l~~~~~~~~id~v~ 146 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDP-SDRGPEIDGVPV----------LGDLDDLPELVREHDIDEVI 146 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-G-GGTT-EETTEEE----------E--GGGHHHHHHHHT--EEE
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCch-hhccCcccCcee----------EcCHHHHHHHHHhCCCCEEE
Confidence 344667777777777777766 7999888764332 222222233323 24677899999999999987
Q ss_pred eCCCccccc--HHHHHHHHHCCCce
Q 009316 149 PGYGFLAEN--AVFVEMCREHGINF 171 (537)
Q Consensus 149 pg~g~lsE~--~~~a~~~e~~Gl~~ 171 (537)
-......+. ..+.+.|++.|+.+
T Consensus 147 ial~~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 147 IALPWSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp E--TTS-HHHHHHHHHHHHTTT-EE
T ss_pred EEcCccCHHHHHHHHHHHHhCCCEE
Confidence 654332111 35667788888764
No 194
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=81.61 E-value=4 Score=43.72 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC----CCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI----DKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~----d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+..+..++..++++|++++++.+.- +.......+.+..+.+. -.|...+.+++++.++|.
T Consensus 300 Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~e~~~~i~~~~pDl 372 (421)
T cd01976 300 GKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYD-------DVTHYELEEFVKRLKPDL 372 (421)
T ss_pred CCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEc-------CCCHHHHHHHHHHhCCCE
Confidence 5889999877667778889999999999875421 10111112223333332 256788889999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
++.+.- + ....+++|+|+.
T Consensus 373 iig~~~---~----~~~a~k~giP~~ 391 (421)
T cd01976 373 IGSGIK---E----KYVFQKMGIPFR 391 (421)
T ss_pred EEecCc---c----hhhhhhcCCCeE
Confidence 995431 2 235677888873
No 195
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=81.36 E-value=3.7 Score=39.62 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=28.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.++|||+|+|..|.+=++.+-+.|-+++++..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~ 43 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSP 43 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcC
Confidence 37899999999999999999999999998843
No 196
>PRK08017 oxidoreductase; Provisional
Probab=81.29 E-value=7.3 Score=37.88 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
|.+++||.|. |.++..+++.+.+.|+++++++.+.+
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~ 37 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD 37 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3478999996 99999999999999999988865443
No 197
>PRK00124 hypothetical protein; Validated
Probab=81.18 E-value=43 Score=30.48 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=64.8
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCC-CchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 73 ~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~-~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+|+|=+ .-++--.+.+.+++.|+++++|.+-.... .+..... +.+.++.....- -..|++.++. -|.|+.
T Consensus 2 ~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v-~~v~V~~g~D~A----D~~Iv~~~~~--gDiVIT- 73 (151)
T PRK00124 2 KIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFI-RTVYVDAGFDAA----DNEIVQLAEK--GDIVIT- 73 (151)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCce-EEEEeCCCCChH----HHHHHHhCCC--CCEEEe-
Confidence 455554 34455567899999999999987322211 1111111 345554222211 1356666643 488885
Q ss_pred CCcccccHHHHHHHHHCCCceeCCC-----HHHHHHhcCHHHHHHHHHHcCCCC
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~-----~~~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
.+..+|..+-..|...+.|. .+.|.....--.+.+-+++.|..+
T Consensus 74 -----~Di~LAa~~l~Kga~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t 122 (151)
T PRK00124 74 -----QDYGLAALALEKGAIVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIRT 122 (151)
T ss_pred -----CCHHHHHHHHHCCCEEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45568888888887777664 444544444444444556678754
No 198
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.88 E-value=6.1 Score=38.18 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=29.9
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.+.|+|||.| .|.++..+++.+.+.|++++++..+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899999 6889999999999999998888654
No 199
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=80.84 E-value=4.2 Score=42.84 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=68.2
Q ss_pred EEEEcCcHHHHHHHHHHHHcCC--cEEEEecCCCCCCchhh----ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 74 ILVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVK----LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 74 iLI~~~g~ia~~ii~aa~~~Gi--~~v~v~~~~d~~~~~~~----~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
|||+|.|.++..+++.+.+.+- ++++.+.+.+....... ..-+.+.+ +..|.+.+.+++++ +|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~l~~~~~~--~dvV 71 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQV-------DVNDPESLAELLRG--CDVV 71 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE---------TTTHHHHHHHHTT--SSEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEE-------ecCCHHHHHHHHhc--CCEE
Confidence 7999999999999999999874 55555433322111110 11133444 35678888888754 6999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
+-.-|.. .+..++++|.+.|++++-++. + ...-....+.++++|+....+
T Consensus 72 in~~gp~-~~~~v~~~~i~~g~~yvD~~~--~--~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 72 INCAGPF-FGEPVARACIEAGVHYVDTSY--V--TEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp EE-SSGG-GHHHHHHHHHHHT-EEEESS---H--HHHHHHCHHHHHHTTSEEE-S
T ss_pred EECCccc-hhHHHHHHHHHhCCCeeccch--h--HHHHHHHHHHHHhhCCEEEeC
Confidence 9776543 567899999999999986543 1 111112234466788887665
No 200
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=80.84 E-value=13 Score=37.71 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEE-EEecC--CCCC---Cchhh------c--cCEEEEcCCCCCCCCCCCHHHH
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCV-AVYST--IDKD---ALHVK------L--ADESVCIGEAPSSQSYLLIPNV 135 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v-~v~~~--~d~~---~~~~~------~--ad~~~~i~~~~~~~sy~~~~~i 135 (537)
..||+|.| .+.++.++++.+.+.|+..+ .|+.. .+.. ..+.. - .|-++..-| -.....+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp------~~~v~~~ 81 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVP------PPFAADA 81 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcC------HHHHHHH
Confidence 47899999 57799999999999999744 45433 2210 00101 1 344443211 1123344
Q ss_pred HHHHHHcCCCE-EEeCCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCH
Q 009316 136 LSAAISRGCTM-LHPGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDK 185 (537)
Q Consensus 136 ~~~a~~~~~d~-V~pg~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK 185 (537)
++.|.+.++.+ |+..-||.-++ .++.+.+++.|++++||+.--+-...++
T Consensus 82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~~ 133 (291)
T PRK05678 82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGEC 133 (291)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccccc
Confidence 44455567765 55556664232 2677888899999999987666555544
No 201
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=80.60 E-value=14 Score=40.01 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCEEEEEcC----cHHHHHHHHHHHHcCC--cEEEEecCCCCC---Cchhh------ccCEEEEcCCCCCCCCCCCHHHH
Q 009316 71 QEKILVANR----GEIAVRVIRTAHEMGI--PCVAVYSTIDKD---ALHVK------LADESVCIGEAPSSQSYLLIPNV 135 (537)
Q Consensus 71 ~~~iLI~~~----g~ia~~ii~aa~~~Gi--~~v~v~~~~d~~---~~~~~------~ad~~~~i~~~~~~~sy~~~~~i 135 (537)
-++|.|+|. +..+.++++.+++.|+ +++.|+...+.. ..+.. -.|-++..-| ......+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp------~~~~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVP------AKYVPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecC------HHHHHHH
Confidence 378999996 4479999999999998 577775443211 01111 1243442211 2334556
Q ss_pred HHHHHHcCCCEEE-eCCCcccc-------cHHHHHHHHHCCCceeCCCHHHHHHhcCH
Q 009316 136 LSAAISRGCTMLH-PGYGFLAE-------NAVFVEMCREHGINFIGPNPDSIRIMGDK 185 (537)
Q Consensus 136 ~~~a~~~~~d~V~-pg~g~lsE-------~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK 185 (537)
++.|.+.++..++ ..-||-.. ..++.+.+++.|+.++||+.--+....++
T Consensus 81 l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~~ 138 (447)
T TIGR02717 81 VEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIK 138 (447)
T ss_pred HHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCCC
Confidence 6666677887664 33344211 13566778889999999986665555554
No 202
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=80.55 E-value=8.3 Score=41.76 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCc--h--hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--H--VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~--~--~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.....+++.++++|++++.+.+....... . ..+.+..+.+. -.|.+.+.+.+++.++|.
T Consensus 326 Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~-------~~d~~e~~~~i~~~~pDl 398 (456)
T TIGR01283 326 GKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLD-------DANPRELLKLLLEYKADL 398 (456)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 478888888888899999999999999987543221110 1 11233333332 247889999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
++.+. .-...+.++|++++
T Consensus 399 ~ig~~-------~~~~~a~k~giP~i 417 (456)
T TIGR01283 399 LIAGG-------KERYTALKLGIPFC 417 (456)
T ss_pred EEEcc-------chHHHHHhcCCCEE
Confidence 99542 11234457889887
No 203
>PLN02775 Probable dihydrodipicolinate reductase
Probab=80.32 E-value=34 Score=34.61 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=44.6
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEec-CCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS-TIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~-~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.+|+|.| .|..+..+++++.+-+++.+.... ..+.....+.+.+.-+.+. ...|.+.++...+...+|.|+
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~------~~~dl~~~l~~~~~~~~~~Vv 84 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLV------GPSEREAVLSSVKAEYPNLIV 84 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeee------cCccHHHHHHHhhccCCCEEE
Confidence 4899999 699999999999889999887432 2221111123333223321 126778888776666788444
No 204
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=80.25 E-value=4.3 Score=42.72 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=43.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
..+|+|+|.|.++..+++.++.+|.++++++.+.+............+.. .+.+.+.+.+.+. ++|.|+-+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~-------~~~~~~~l~~~l~--~aDvVI~a 237 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHT-------RYSNAYEIEDAVK--RADLLIGA 237 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEe-------ccCCHHHHHHHHc--cCCEEEEc
Confidence 46799999999999999999999998777753322111110111111211 2344556666654 58888854
No 205
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=80.15 E-value=16 Score=35.95 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=27.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
-+||+|+|.|.++..++..+.++|+.-+.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lv 54 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLL 54 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence 3689999999999999999999999877654
No 206
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=80.05 E-value=21 Score=35.50 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=51.3
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~-Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
.||.|+|. |.++..+++.+.+. +++++++... +....... +. .....|.+.+.+++ ++|+|+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~-~~~~~~~~--~~-------~~i~~~~dl~~ll~-----~~DvVid 66 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR-PGSPLVGQ--GA-------LGVAITDDLEAVLA-----DADVLID 66 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCcccccc--CC-------CCccccCCHHHhcc-----CCCEEEE
Confidence 58999997 99999999999875 7888876532 21111100 10 11123556666542 5888873
Q ss_pred CCCcccccHHHHHHHHHCCCce-eCC
Q 009316 150 GYGFLAENAVFVEMCREHGINF-IGP 174 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~-iGp 174 (537)
..- -+-..+.+..+.+.|+++ +|+
T Consensus 67 ~t~-p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 67 FTT-PEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred CCC-HHHHHHHHHHHHHcCCCEEEEC
Confidence 210 001245667777888875 454
No 207
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=79.95 E-value=9 Score=39.56 Aligned_cols=75 Identities=12% Similarity=-0.060 Sum_probs=49.2
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchh---hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~---~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.|+|||.|. |.++..+++.+.+.|++|+++..+........ ...+....+ ..+..+.+.+.++.+..++|.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-----FGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEE-----EccCCCHHHHHHHHhhcCCCE
Confidence 378999995 88999999999999999988864433211111 111111111 124567788888888778898
Q ss_pred EEeC
Q 009316 147 LHPG 150 (537)
Q Consensus 147 V~pg 150 (537)
|+-.
T Consensus 79 vih~ 82 (349)
T TIGR02622 79 VFHL 82 (349)
T ss_pred EEEC
Confidence 7744
No 208
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=79.94 E-value=6.9 Score=39.58 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=43.2
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
+||||.|+ |.++..+++.+.+.| +++++..... .+ ..+..|.+.+.++.+..++|+|+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------~~-------~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-----------DY-------CGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-----------cc-------cCCCCCHHHHHHHHHhcCCCEEE
Confidence 47999995 999999999999999 7776632110 11 12467788888888877899877
No 209
>PRK08267 short chain dehydrogenase; Provisional
Probab=79.91 E-value=5.6 Score=38.97 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=29.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
||++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 47899999 58899999999999999999886444
No 210
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=79.89 E-value=50 Score=32.67 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=85.1
Q ss_pred CHHHHHHHHHH---cCCCEEEeCCCcccccHHHHHHHHHCCCcee---CCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC
Q 009316 131 LIPNVLSAAIS---RGCTMLHPGYGFLAENAVFVEMCREHGINFI---GPNPDSIRIMGDKSTARETMKNAGVPTVPGSD 204 (537)
Q Consensus 131 ~~~~i~~~a~~---~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i---Gp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~ 204 (537)
|.-+.+++++. .|+ .|+| +.+.++.+++.+++.|...+ |.+--+-+-+.|+...+.+.++..+|+.-.
T Consensus 122 D~~etl~Aae~Lv~eGF-~VlP---Y~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivd-- 195 (267)
T CHL00162 122 DPIGTLKAAEFLVKKGF-TVLP---YINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIID-- 195 (267)
T ss_pred ChHHHHHHHHHHHHCCC-EEee---cCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEe--
Confidence 44455555543 455 4666 45688999999999997543 444445566789999999999999998776
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcC
Q 009316 205 GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (537)
Q Consensus 205 ~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g 262 (537)
.-+.+.+++..+. ++|.--|+ ...++.+..|+.++.+++..+-..++.+|-
T Consensus 196 AGIgt~sDa~~Am-ElGaDgVL------~nSaIakA~dP~~mA~a~~~AV~AGR~A~~ 246 (267)
T CHL00162 196 AGIGTPSEASQAM-ELGASGVL------LNTAVAQAKNPEQMAKAMKLAVQAGRLAYL 246 (267)
T ss_pred CCcCCHHHHHHHH-HcCCCEEe------ecceeecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678888887765 46654333 235677889999999999988776665443
No 211
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.81 E-value=5.4 Score=37.18 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
-.-++|.|+|-|.|+..+++.++.+|.+|+.++...
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 346899999999999999999999999999885443
No 212
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=79.69 E-value=66 Score=35.58 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCeEEEEEe
Q 009316 318 PELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMN 359 (537)
Q Consensus 318 ~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~g~~~~lEiN 359 (537)
+...++|.+.+.++-+.+| -+-.|||-+ ++|++|+|-.-
T Consensus 257 p~~~~eL~~~a~~LE~~fg--~pqDIEfai-~~g~L~iLQaR 295 (530)
T PRK05878 257 PAVYDELMAAARTLERLGR--DVQDIEFTV-ESGKLWLLQTR 295 (530)
T ss_pred HHHHHHHHHHHHHHHHHcC--CceeEEEEE-ECCEEEEEEee
Confidence 4677788888888887766 688899999 56889998763
No 213
>TIGR03586 PseI pseudaminic acid synthase.
Probab=79.65 E-value=24 Score=36.51 Aligned_cols=78 Identities=13% Similarity=0.284 Sum_probs=48.5
Q ss_pred HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceE
Q 009316 159 VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238 (537)
Q Consensus 159 ~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~ 238 (537)
.+.+.|++.|+.|+-... |... -+++.+.|++...--...+++..- .+.+.+.|-|+++| +|+
T Consensus 81 ~L~~~~~~~Gi~~~stpf-------d~~s-vd~l~~~~v~~~KI~S~~~~n~~L-L~~va~~gkPvils-------tG~- 143 (327)
T TIGR03586 81 ELFERAKELGLTIFSSPF-------DETA-VDFLESLDVPAYKIASFEITDLPL-IRYVAKTGKPIIMS-------TGI- 143 (327)
T ss_pred HHHHHHHHhCCcEEEccC-------CHHH-HHHHHHcCCCEEEECCccccCHHH-HHHHHhcCCcEEEE-------CCC-
Confidence 456668888888873222 2221 256777777753321133445544 44455679999998 555
Q ss_pred EeCCHHHHHHHHHHHHH
Q 009316 239 LAKEPDEFVKLLQQAKS 255 (537)
Q Consensus 239 ~v~~~~el~~~~~~~~~ 255 (537)
.+.+|+..+++.+.+
T Consensus 144 --~t~~Ei~~Av~~i~~ 158 (327)
T TIGR03586 144 --ATLEEIQEAVEACRE 158 (327)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 388999999888754
No 214
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.62 E-value=5.2 Score=40.98 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=57.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|||.|.|.++..+++.|+.+|.+ ++++.++.+......++ +|..+.. . +. +.+.+.++....++|.|+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~----~--~~-~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINS----G--QD-DVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcC----C--cc-hHHHHHHHhCCCCCCEEE
Confidence 57999999999999999999999999 77775443332222222 2333321 1 11 145555555445799999
Q ss_pred eCCCcccccHHHHHHHHHCCCc-eeCC
Q 009316 149 PGYGFLAENAVFVEMCREHGIN-FIGP 174 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~-~iGp 174 (537)
-..|...-.....+.+...|.. ++|.
T Consensus 237 d~~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 237 ECSGNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 7665321112334555565643 3453
No 215
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.54 E-value=6.9 Score=42.88 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEc
Q 009316 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120 (537)
Q Consensus 68 ~~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i 120 (537)
..+-.||+|+|.|.++...+.+|+.+|-+|++++..+++.....++-..++.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i 214 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL 214 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence 33468999999999999999999999998888865555444444444444444
No 216
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.45 E-value=12 Score=35.70 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=26.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc-EEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAV 100 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v 100 (537)
-++|||+|.|.++..+++.+.++|+. ++++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lv 51 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIV 51 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence 36899999999999999999999995 4555
No 217
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=79.35 E-value=6.3 Score=40.65 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=27.0
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEe
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEM-GIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~-Gi~~v~v~ 101 (537)
||+|||.|. |-++..+++.+.+. |++|+++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 368999995 99999999999876 79999885
No 218
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.25 E-value=9.1 Score=41.64 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=53.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCE---EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE---SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~---~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.++|+|+|-|..+..+++.+.+.|+.+.+.+.+. . ....+.++ .+..+ ..+.+.+ .++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~--~-~~~~~l~~~gi~~~~~-------~~~~~~~------~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE--T-ARHKLIEVTGVADIST-------AEASDQL------DSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh--H-HHHHHHHhcCcEEEeC-------CCchhHh------cCCCEE
Confidence 4789999999999999999999999766654221 1 11122121 12111 1112222 357888
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeC
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iG 173 (537)
+-..|.-..++.+. .+.+.|+++++
T Consensus 79 V~Spgi~~~~p~~~-~a~~~gi~v~~ 103 (473)
T PRK00141 79 VTSPGWRPDSPLLV-DAQSQGLEVIG 103 (473)
T ss_pred EeCCCCCCCCHHHH-HHHHCCCceee
Confidence 87766655565554 55788999874
No 219
>PRK06182 short chain dehydrogenase; Validated
Probab=79.19 E-value=7.3 Score=38.55 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=46.7
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~-----~~~ 144 (537)
.+++||.|. |.++..+++.+.+.|++++++..+.+........--..+.. +..|.+.+.++.++ .++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~-------Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSL-------DVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEe-------eCCCHHHHHHHHHHHHHhcCCC
Confidence 478999994 88999999999999999998865443211000000122222 24455555544443 268
Q ss_pred CEEEeCCCc
Q 009316 145 TMLHPGYGF 153 (537)
Q Consensus 145 d~V~pg~g~ 153 (537)
|.++-..|.
T Consensus 76 d~li~~ag~ 84 (273)
T PRK06182 76 DVLVNNAGY 84 (273)
T ss_pred CEEEECCCc
Confidence 988866554
No 220
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.17 E-value=7.4 Score=33.16 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=52.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 73 KILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~--Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
||+|+|.|.++...++++.+. +.++++++. .+... ....+. .+.+ ..|.+.++++ ...++|+|+-.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d-~~~~~-~~~~~~-~~~~------~~~~~~~~ll---~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD-PDPER-AEAFAE-KYGI------PVYTDLEELL---ADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC-SSHHH-HHHHHH-HTTS------EEESSHHHHH---HHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe-CCHHH-HHHHHH-Hhcc------cchhHHHHHH---HhhcCCEEEEe
Confidence 799999999999999999888 566776652 22211 111110 0000 1356655544 44478888754
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009316 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
... ..+.+.+..+.+.|++++
T Consensus 70 tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 70 TPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp SSG-GGHHHHHHHHHHTTSEEE
T ss_pred cCC-cchHHHHHHHHHcCCEEE
Confidence 422 245677777778888665
No 221
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=79.13 E-value=9.5 Score=39.36 Aligned_cols=99 Identities=15% Similarity=0.016 Sum_probs=52.4
Q ss_pred CEEEEEcCcHH-----HHHHHHHHHHcCCcEEEEecCCCCCCchhh-ccCEEEEcCCCCC--CC----------CCCCHH
Q 009316 72 EKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPS--SQ----------SYLLIP 133 (537)
Q Consensus 72 ~~iLI~~~g~i-----a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-~ad~~~~i~~~~~--~~----------sy~~~~ 133 (537)
+||+|.++|.- +..+++.+++.|+++.+++...+....... ..-..+.++.... .. ......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVL 81 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHH
Confidence 67888765332 346889999999999998764422111111 1223333432110 00 122334
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
.+.++.++.++|.||...... +....-+....+++++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v 118 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLV 118 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEE
Confidence 556667788999999753221 2112223445577765
No 222
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.09 E-value=3.7 Score=41.84 Aligned_cols=38 Identities=32% Similarity=0.292 Sum_probs=34.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA 108 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~ 108 (537)
++||+++|-.+.+..+++++-+.|+++++|++.+|...
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~ 38 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPA 38 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCcc
Confidence 46899999999999999999999999999999888543
No 223
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=79.04 E-value=8.1 Score=42.50 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCC----chhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDA----LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~-~~Gi~~v~v~~~~d~~~----~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~ 144 (537)
..||+.|.+.+.....++..+. ++|++++++.+...... ....+.+..+.++ + .+.-+..+.+++.++
T Consensus 327 ~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~------D-~~~~e~~~~l~~~~~ 399 (513)
T TIGR01861 327 KGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAID------D-PNELEGLEAMEMLKP 399 (513)
T ss_pred CCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEec------C-CCHHHHHHHHHhcCC
Confidence 3589999999999999999999 69999998865432111 1122334444442 1 222333456688899
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 145 d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
|.++.+. . + ....+++|++|+
T Consensus 400 Dllig~s-~--~----~~~A~k~gIP~l 420 (513)
T TIGR01861 400 DIILTGK-R--P----GEVSKKMRVPYL 420 (513)
T ss_pred CEEEecC-c--c----chhHhhcCCCEE
Confidence 9999653 1 1 145678899885
No 224
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=78.97 E-value=17 Score=36.19 Aligned_cols=164 Identities=18% Similarity=0.273 Sum_probs=87.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC-----------------CCCCchhhccC--------EEEEcCCCCCCC
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTI-----------------DKDALHVKLAD--------ESVCIGEAPSSQ 127 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~-----------------d~~~~~~~~ad--------~~~~i~~~~~~~ 127 (537)
.|+-++.|. --.++.+.+-|.+.+++|+.. |.+.....++. ..+..| -...+
T Consensus 16 pIig~gaGt--GlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaG-v~atD 92 (268)
T PF09370_consen 16 PIIGAGAGT--GLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAG-VCATD 92 (268)
T ss_dssp -EEEEEESS--HHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEE-E-TT-
T ss_pred ceEEEeecc--chhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEE-ecCcC
Confidence 355444432 234678888899999988532 11111122222 222221 23557
Q ss_pred CCCCHHHHHHHHHHcCCCEE--EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCc
Q 009316 128 SYLLIPNVLSAAISRGCTML--HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG 205 (537)
Q Consensus 128 sy~~~~~i~~~a~~~~~d~V--~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~ 205 (537)
.|.+.+.+++-+++.|+..| +|+.|.. +..|.+.+|+.|+.|- . -..+-+.+++.|+-+.+|
T Consensus 93 P~~~~~~fl~~lk~~Gf~GV~NfPTvgli--DG~fR~~LEe~Gmgy~---~--------EVemi~~A~~~gl~T~~y--- 156 (268)
T PF09370_consen 93 PFRDMDRFLDELKELGFSGVQNFPTVGLI--DGQFRQNLEETGMGYD---R--------EVEMIRKAHEKGLFTTAY--- 156 (268)
T ss_dssp TT--HHHHHHHHHHHT-SEEEE-S-GGG----HHHHHHHHHTT--HH---H--------HHHHHHHHHHTT-EE--E---
T ss_pred CCCcHHHHHHHHHHhCCceEEECCcceee--ccHHHHHHHhcCCCHH---H--------HHHHHHHHHHCCCeeeee---
Confidence 78999999999999999988 5666653 4789999999998652 2 234556788999999987
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeec--CCCCCcceEEeCCHHHHHHHHHHHHHHH
Q 009316 206 LLQSTEEAVKLADELGFPVMIKAT--AGGGGRGMRLAKEPDEFVKLLQQAKSEA 257 (537)
Q Consensus 206 ~v~~~~~~~~~~~~ig~PvvvKp~--~g~gg~Gv~~v~~~~el~~~~~~~~~~~ 257 (537)
+.+.+++.+.+ +-|--+++=-. ..+|..|.....+.++..+..+++.+.+
T Consensus 157 -vf~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa 208 (268)
T PF09370_consen 157 -VFNEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA 208 (268)
T ss_dssp -E-SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH
T ss_pred -ecCHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH
Confidence 56899988877 56766665543 3346788888888888887777776654
No 225
>PRK08219 short chain dehydrogenase; Provisional
Probab=78.86 E-value=6.1 Score=37.55 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=45.3
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchh-hccC-EEEEcCCCCCCCCCCCHHHHHHHHHHc-CCC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLAD-ESVCIGEAPSSQSYLLIPNVLSAAISR-GCT 145 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~-~~ad-~~~~i~~~~~~~sy~~~~~i~~~a~~~-~~d 145 (537)
|+|++||.| .|.++..+++.+.+. ++++++....+...... ...+ +.+. -+..|.+.+.++.... ++|
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-------~D~~~~~~~~~~~~~~~~id 73 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFP-------VDLTDPEAIAAAVEQLGRLD 73 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEe-------cCCCCHHHHHHHHHhcCCCC
Confidence 467899999 488999999998888 99988864432111111 1111 1222 2355667777766553 588
Q ss_pred EEEeC
Q 009316 146 MLHPG 150 (537)
Q Consensus 146 ~V~pg 150 (537)
.|+=.
T Consensus 74 ~vi~~ 78 (227)
T PRK08219 74 VLVHN 78 (227)
T ss_pred EEEEC
Confidence 87744
No 226
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=78.79 E-value=10 Score=39.09 Aligned_cols=70 Identities=9% Similarity=-0.094 Sum_probs=47.2
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC--chhhcc---------C-EEEEcCCCCCCCCCCCHHHHHHH
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA---------D-ESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~--~~~~~a---------d-~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
|+|||.|+ |-++..+++.+.+.|++|+++....+... ....+. . +.+. .+..|.+.+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHY-------GDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEE-------eccCCHHHHHHH
Confidence 58999995 89999999999999999998864332110 000010 0 1111 245678888888
Q ss_pred HHHcCCCEEE
Q 009316 139 AISRGCTMLH 148 (537)
Q Consensus 139 a~~~~~d~V~ 148 (537)
.+..++|.|+
T Consensus 74 ~~~~~~d~Vi 83 (343)
T TIGR01472 74 IDEIKPTEIY 83 (343)
T ss_pred HHhCCCCEEE
Confidence 8877789876
No 227
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=78.78 E-value=82 Score=36.75 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCeEEEEEeccC
Q 009316 315 ALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRI 362 (537)
Q Consensus 315 ~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-~g~~~~lEiN~R~ 362 (537)
.|+++...+|.+.+.++-+.+|. +--+||-+++ +|++|++.. |+
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWai~~~~g~l~ILQa--RP 332 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGR--PMDIEWAKDGDDGKLYIVQA--RP 332 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCcEEEEEe--ec
Confidence 37888999999999999999886 7789999985 688999985 54
No 228
>PRK05865 hypothetical protein; Provisional
Probab=78.69 E-value=27 Score=40.85 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=67.7
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
+||||.|+ |.++..+++.+.+.|++++++........ ...-..+.. +..|.+.+.++.+ ++|.|+-.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~---~~~v~~v~g-------DL~D~~~l~~al~--~vD~VVHl 68 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW---PSSADFIAA-------DIRDATAVESAMT--GADVVAHC 68 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc---ccCceEEEe-------eCCCHHHHHHHHh--CCCEEEEC
Confidence 37999995 99999999999999999998864321110 000122222 3566777766664 58876644
Q ss_pred CCccc----cc----HHHHHHHHHCCC-ceeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 009316 151 YGFLA----EN----AVFVEMCREHGI-NFIGPNPDSIRIMGDKSTARETMKNAGVPTV 200 (537)
Q Consensus 151 ~g~ls----E~----~~~a~~~e~~Gl-~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp 200 (537)
-+... -| ..+.+++.+.|+ .++..+... |..+.+++.+.|+++.
T Consensus 69 Aa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~v 121 (854)
T PRK05865 69 AWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEWV 121 (854)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCEE
Confidence 22211 11 234566777775 333333222 7888888888888763
No 229
>PRK06057 short chain dehydrogenase; Provisional
Probab=78.63 E-value=6.7 Score=38.33 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=30.3
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 69 ~~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
...++|||.|. |.++..+++.+.+.|+++++++.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34589999995 8899999999999999998886443
No 230
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.27 E-value=19 Score=42.02 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=58.1
Q ss_pred CCCEEEEEcCcHHHHHH-HHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 70 RQEKILVANRGEIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~i-i~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.+++|+|+|-|.++... ++.+++.|++|.+.+..............-.+..+ . +.+.+ .++|.|+
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g-------~-~~~~~------~~~d~vV 68 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLG-------H-QEEHV------PEDAVVV 68 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCC-------C-CHHHc------CCCCEEE
Confidence 35789999999999997 99999999998876432221111111111122222 1 11111 3578888
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q 009316 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i 179 (537)
-..|.-..++.+.. +.+.|+++++ ..+.+
T Consensus 69 ~SpgI~~~~p~~~~-a~~~gi~v~~-~~el~ 97 (809)
T PRK14573 69 YSSSISKDNVEYLS-AKSRGNRLVH-RAELL 97 (809)
T ss_pred ECCCcCCCCHHHHH-HHHCCCcEEe-HHHHH
Confidence 77777666776655 4678899884 45554
No 231
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=78.21 E-value=7.5 Score=42.35 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchh---h-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---K-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~---~-~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.....+++.++++|++++.+.+......... . +.+..+.++ ..+..++.+.+++.++|.
T Consensus 324 Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~-------d~~~~e~~~~i~~~~pDl 396 (475)
T PRK14478 324 GKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMID-------DANPRELYKMLKEAKADI 396 (475)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 57899988888888999999999999998865543221111 1 122333332 346778888888899999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
++.+. .-....++.|++++
T Consensus 397 iig~s-------~~~~~a~k~giP~~ 415 (475)
T PRK14478 397 MLSGG-------RSQFIALKAGMPWL 415 (475)
T ss_pred EEecC-------chhhhhhhcCCCEE
Confidence 99642 12245667899887
No 232
>PRK07577 short chain dehydrogenase; Provisional
Probab=77.97 E-value=17 Score=34.75 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=44.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHH----HHcCCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA----ISRGCT 145 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a----~~~~~d 145 (537)
.|++||.|. |.++..+++.+.+.|++++++..+.+.. ...+.+.. +..+.+.+.++. ...++|
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~-----~~~~~~~~-------D~~~~~~~~~~~~~~~~~~~~d 70 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD-----FPGELFAC-------DLADIEQTAATLAQINEIHPVD 70 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc-----cCceEEEe-------eCCCHHHHHHHHHHHHHhCCCc
Confidence 368999995 8899999999999999999987554331 11123332 234444443333 334788
Q ss_pred EEEeCCC
Q 009316 146 MLHPGYG 152 (537)
Q Consensus 146 ~V~pg~g 152 (537)
.|+-.-|
T Consensus 71 ~vi~~ag 77 (234)
T PRK07577 71 AIVNNVG 77 (234)
T ss_pred EEEECCC
Confidence 8875544
No 233
>PRK12742 oxidoreductase; Provisional
Probab=77.96 E-value=9.4 Score=36.62 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=46.1
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCch--hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc-CC
Q 009316 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GC 144 (537)
Q Consensus 69 ~~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~--~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~-~~ 144 (537)
.+.|+|||.| .|.++..+++.+.+.|++++++.......... ....-..+.. +..+.+.+.++..+. ++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQT-------DSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEec-------CCCCHHHHHHHHHHhCCC
Confidence 3458899999 48899999999999999987764321110000 0111122222 244566666666554 47
Q ss_pred CEEEeCCC
Q 009316 145 TMLHPGYG 152 (537)
Q Consensus 145 d~V~pg~g 152 (537)
|.++-.-|
T Consensus 77 d~li~~ag 84 (237)
T PRK12742 77 DILVVNAG 84 (237)
T ss_pred cEEEECCC
Confidence 87774443
No 234
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=77.91 E-value=12 Score=40.30 Aligned_cols=87 Identities=15% Similarity=0.040 Sum_probs=52.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHH---HcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAH---EMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~---~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.++++|+|.|+.+..+++.++ ..|++++.+..+. ............+ +.+ +++.+.++++++|.|
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~-~~~~~~~i~g~pV----------lg~-~~l~~~i~~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTD-PAASGRLLTGLPV----------VGA-DDALRLYARTRYAYV 192 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCC-ccccccccCCCcc----------cCh-hHHHHHHHhCCCCEE
Confidence 478999999999999999987 4689988775332 1111111111111 233 678888888999976
Q ss_pred EeCCCcccc--cHHHHHHHHHCCC
Q 009316 148 HPGYGFLAE--NAVFVEMCREHGI 169 (537)
Q Consensus 148 ~pg~g~lsE--~~~~a~~~e~~Gl 169 (537)
+-..+...+ ..++.+.|++.|+
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHF 216 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCC
Confidence 644432211 1234445555555
No 235
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=77.87 E-value=13 Score=38.14 Aligned_cols=72 Identities=4% Similarity=-0.138 Sum_probs=48.0
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC--chhhcc-------C--EEEEcCCCCCCCCCCCHHHHHHH
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA-------D--ESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~--~~~~~a-------d--~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
.++|||.|+ |-++..+++.+.+.|++|+++....+... ....+. . +.+. .+..|.+.+.++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~~~~~ 78 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHY-------GDLSDASSLRRW 78 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEE-------ecCCCHHHHHHH
Confidence 478999995 88999999999999999998864332110 001111 0 1111 245677888888
Q ss_pred HHHcCCCEEEe
Q 009316 139 AISRGCTMLHP 149 (537)
Q Consensus 139 a~~~~~d~V~p 149 (537)
.+..++|.|+=
T Consensus 79 ~~~~~~d~Vih 89 (340)
T PLN02653 79 LDDIKPDEVYN 89 (340)
T ss_pred HHHcCCCEEEE
Confidence 87777898763
No 236
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=77.80 E-value=7.8 Score=34.19 Aligned_cols=30 Identities=13% Similarity=0.383 Sum_probs=25.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
+||+|+|.|.++..+++.+-+.|+.-+.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lv 32 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLV 32 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeec
Confidence 689999999999999999999999655443
No 237
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.76 E-value=5.7 Score=38.25 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEE
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAV 100 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v 100 (537)
+++++||.|. |.++..+++.+.+.|++++++
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4578999995 899999999999999999887
No 238
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=77.75 E-value=7.1 Score=38.80 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=44.0
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 73 ~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
||||+|. |.++..+++.+.+.|++++++... ..+..+.+.+.++.+..++|.|+-.-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------------~~d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------------QLDLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------------ccCCCCHHHHHHHHHhCCCCEEEECC
Confidence 5899995 999999999999999999887431 01356777888888777789887443
No 239
>PLN02240 UDP-glucose 4-epimerase
Probab=77.73 E-value=12 Score=38.50 Aligned_cols=73 Identities=12% Similarity=-0.028 Sum_probs=47.3
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCc-hhhc-------cC--EEEEcCCCCCCCCCCCHHHHHHHH
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKL-------AD--ESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~-~~~~-------ad--~~~~i~~~~~~~sy~~~~~i~~~a 139 (537)
.++|||.|. |.++..+++.+.+.|++|++++........ .... .. +.+. -+..+.+.+.++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~D~~~~~~l~~~~ 77 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHK-------VDLRDKEALEKVF 77 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEe-------cCcCCHHHHHHHH
Confidence 478999995 899999999999999999888532111100 0000 00 1222 2456778887777
Q ss_pred HHcCCCEEEeC
Q 009316 140 ISRGCTMLHPG 150 (537)
Q Consensus 140 ~~~~~d~V~pg 150 (537)
+..++|.|+-.
T Consensus 78 ~~~~~d~vih~ 88 (352)
T PLN02240 78 ASTRFDAVIHF 88 (352)
T ss_pred HhCCCCEEEEc
Confidence 76788987643
No 240
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=77.69 E-value=7.7 Score=33.86 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=45.1
Q ss_pred EEE-EcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcC-CCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 74 ILV-ANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 74 iLI-~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~-~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
||+ .+. .....+.++.+++.|+++.++....+........--..+.+. +....-.+...-++..+.++.++|.||..
T Consensus 2 Il~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~h 81 (139)
T PF13477_consen 2 ILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHCH 81 (139)
T ss_pred EEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEEe
Confidence 444 443 335788999999999999999875443221111111223332 00111222334467777888999999964
Q ss_pred C
Q 009316 151 Y 151 (537)
Q Consensus 151 ~ 151 (537)
.
T Consensus 82 ~ 82 (139)
T PF13477_consen 82 T 82 (139)
T ss_pred c
Confidence 3
No 241
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=77.56 E-value=5.9 Score=39.54 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=53.8
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCC-CchhhccCEE----EEcCCCCCCCCCCCHHHHHHHHHH
Q 009316 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADES----VCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 68 ~~~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~-~~~~~~ad~~----~~i~~~~~~~sy~~~~~i~~~a~~ 141 (537)
.++.+++||.| .+.|+..+++.+.+.|+.++++..+.+.. ....++.+.. ..+. .+-.+..+.+.+.+..+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~--~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIP--ADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE--CcCCChhHHHHHHHHHHh
Confidence 45678999999 57899999999999999999997665532 1223333322 2221 222233455566655555
Q ss_pred c--CCCEEEeCCC
Q 009316 142 R--GCTMLHPGYG 152 (537)
Q Consensus 142 ~--~~d~V~pg~g 152 (537)
. .+|.++-.-|
T Consensus 81 ~~~~IdvLVNNAG 93 (265)
T COG0300 81 RGGPIDVLVNNAG 93 (265)
T ss_pred cCCcccEEEECCC
Confidence 5 7898886544
No 242
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.52 E-value=7.2 Score=37.43 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=28.3
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.+++||.| .|.++..+++.+.+.|++++++..+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 47899998 5889999999999999998888543
No 243
>PRK06483 dihydromonapterin reductase; Provisional
Probab=77.42 E-value=12 Score=36.04 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
|.|++||.|. +.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 5678999994 7799999999999999999886544
No 244
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=77.40 E-value=12 Score=36.40 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=63.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
-++|+|+|.|.++..+++.+.++|+.-+.+. |.|.-..+ .+..+.+.- . ... .-...+.+.+..++.+.+.-+-.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lv-D~D~ve~s-NL~Rq~l~~-~-~di-G~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLV-DDDVVELS-NLQRQILHT-E-ADV-GQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEE-cCCEEcCc-ccccccccC-h-hhC-CChHHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999999776654 33322111 111111110 0 000 12345566666666665532211
Q ss_pred C-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 151 Y-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 151 ~-g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
+ ...++ ..+.+.+...-+.+...+.- ..+....+++.++++|..-.
T Consensus 96 ~~~~i~~-~~~~~~~~~~DvVi~~~d~~-----~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 96 YNERLDA-ENAEELIAGYDLVLDCTDNF-----ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred ecceeCH-HHHHHHHhCCCEEEEcCCCH-----HHHHHHHHHHHHcCCCEEEE
Confidence 1 11111 22334444444544332211 12445667788889887643
No 245
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=77.34 E-value=6.6 Score=40.79 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-cEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi-~~v~v~ 101 (537)
-+||||+|.|.++..++..+.+.|+ ++.+++
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD 55 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVD 55 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 4689999999999999999999999 555664
No 246
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.21 E-value=8.7 Score=41.75 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=57.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch--hhcc--CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~--~~~a--d~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.++|+|+|.|.++..+++.+++.|++|++++..+...... ..+. .-.+..+... . ....+|.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~------~--------~~~~~D~ 81 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP------T--------LPEDTDL 81 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc------c--------ccCCCCE
Confidence 4689999999999999999999999988875332111111 1121 2223332111 0 1245899
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~ 178 (537)
|+-+.|.-..++ +...+++.|+++++ ..+.
T Consensus 82 Vv~s~Gi~~~~~-~~~~a~~~gi~v~~-~~e~ 111 (480)
T PRK01438 82 VVTSPGWRPDAP-LLAAAADAGIPVWG-EVEL 111 (480)
T ss_pred EEECCCcCCCCH-HHHHHHHCCCeecc-hHHH
Confidence 988877665554 44556788999874 4444
No 247
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.09 E-value=13 Score=40.41 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=57.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch-hhccCE-EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADE-SVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~-~~~ad~-~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|+|+|-|..+..+++.+++.|.++++.+......... .++.+. .+..+ ..+.+.+ .++|.|+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~------~~~d~vV 74 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVET-------EASAQRL------AAFDVVV 74 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeC-------CCChHHc------cCCCEEE
Confidence 4789999999999999999999999998875432211111 122111 11111 1122222 3589999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHH
Q 009316 149 PGYGFLAENAVFVEMCREHGINFIGPNPD 177 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~ 177 (537)
...|.-..++. .+.+++.|+++++ ..+
T Consensus 75 ~SpgI~~~~p~-~~~a~~~~i~i~~-~~e 101 (468)
T PRK04690 75 KSPGISPYRPE-ALAAAARGTPFIG-GTA 101 (468)
T ss_pred ECCCCCCCCHH-HHHHHHcCCcEEE-HHH
Confidence 88776555554 4555788999985 344
No 248
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.89 E-value=5.4 Score=37.03 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=27.4
Q ss_pred CCEEEEEcCcHH-HHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEI-AVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~i-a~~ii~aa~~~Gi~~v~v~~ 102 (537)
.++|||+|.|++ +..+++.+.+.|.+++++..
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 589999999996 77799999999998777654
No 249
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.65 E-value=9.4 Score=37.21 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=30.4
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 69 ~~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+.+++||.|. |.++..+++.+.+.|++++++..+.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 33588999995 8899999999999999998886544
No 250
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=76.60 E-value=13 Score=40.92 Aligned_cols=70 Identities=21% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCchh-----hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009316 71 QEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHV-----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~-~~Gi~~v~v~~~~d~~~~~~-----~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~ 144 (537)
.||+.|.+....+..+.+.+. ++|++++.+.+.......+. .++|+.+ + ..|...+.+.+++.++
T Consensus 295 Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~-i--------~dD~~ei~~~i~~~~p 365 (511)
T TIGR01278 295 GKRAFVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVL-I--------TDDFQEVADAIAALEP 365 (511)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeE-E--------eCCHHHHHHHHHhcCC
Confidence 589999999999999999997 99999987643221111111 1223322 1 1245567677777777
Q ss_pred CEEEe
Q 009316 145 TMLHP 149 (537)
Q Consensus 145 d~V~p 149 (537)
|.|+-
T Consensus 366 dliiG 370 (511)
T TIGR01278 366 ELVLG 370 (511)
T ss_pred CEEEE
Confidence 77773
No 251
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.53 E-value=11 Score=36.26 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=29.8
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+|++||.|. |.++..+++.+.+.|++|+++..+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999994 8899999999999999988886443
No 252
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=76.51 E-value=8.6 Score=39.27 Aligned_cols=151 Identities=23% Similarity=0.284 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE--EeC-CCcccccHH
Q 009316 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML--HPG-YGFLAENAV 159 (537)
Q Consensus 83 a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V--~pg-~g~lsE~~~ 159 (537)
.+.=|+++.+.|.++|=+.......+..+..--+...+ |-..+.-+.-.++-.+-+.++|.+ =|| +|+..-...
T Consensus 38 Tv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~v---PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 38 TVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNV---PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCC---CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 45667889999999987765444333222211111111 111122222355555556777764 455 555322356
Q ss_pred HHHHHHHCCCce-eCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceE
Q 009316 160 FVEMCREHGINF-IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238 (537)
Q Consensus 160 ~a~~~e~~Gl~~-iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~ 238 (537)
+.+.+.+.|++. ||-++-++ -+++++++|-|+|+. .+.|.-.-.+.+++++|+=++= -.
T Consensus 115 vVe~Ak~~g~piRIGVN~GSL--------ek~~~~ky~~pt~ea---lveSAl~~a~~~e~l~f~~i~i---------S~ 174 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGSL--------EKRLLEKYGGPTPEA---LVESALEHAELLEELGFDDIKV---------SV 174 (361)
T ss_pred HHHHHHHcCCCEEEecccCch--------hHHHHHHhcCCCHHH---HHHHHHHHHHHHHHCCCCcEEE---------EE
Confidence 778888999986 77776655 356788888888875 5666666667788999982221 12
Q ss_pred EeCCHHHHHHHHHHHHHH
Q 009316 239 LAKEPDEFVKLLQQAKSE 256 (537)
Q Consensus 239 ~v~~~~el~~~~~~~~~~ 256 (537)
++.+..++.++++.+...
T Consensus 175 K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 175 KASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EcCCHHHHHHHHHHHHHh
Confidence 456788888888776543
No 253
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.43 E-value=10 Score=36.33 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=29.4
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
+.++|||.| .|.++..+++.+.+.|++++++..+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 347899999 58899999999999999988876544
No 254
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=76.32 E-value=6.4 Score=40.24 Aligned_cols=71 Identities=11% Similarity=-0.008 Sum_probs=45.5
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCch----hhccC---EEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLAD---ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~----~~~ad---~~~~i~~~~~~~sy~~~~~i~~~a~~~~ 143 (537)
+||||.| .|.++..+++.+.+.|++|+++.......... ....+ +.+.. +..+.+.+.++....+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEG-------DIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEc-------cCCCHHHHHHHHhcCC
Confidence 3799999 59999999999999999998874322111100 01111 12221 3556777777777678
Q ss_pred CCEEEe
Q 009316 144 CTMLHP 149 (537)
Q Consensus 144 ~d~V~p 149 (537)
+|+|+-
T Consensus 74 ~d~vvh 79 (338)
T PRK10675 74 IDTVIH 79 (338)
T ss_pred CCEEEE
Confidence 998763
No 255
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.28 E-value=5 Score=43.15 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch--hhcc--CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~--~~~a--d~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.|+++|+|.|.++..+++.+.+.|++|++++.+....... ..+. ...+..+ ++.+ . ...++|+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~------~~~~--~-----~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLG------EYPE--E-----FLEGVDL 71 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeC------Ccch--h-----HhhcCCE
Confidence 4789999999999999999999999998885432111100 1110 1112111 1111 1 1246898
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
|+-..|....++ ....+++.|++++
T Consensus 72 vv~~~g~~~~~~-~~~~a~~~~i~~~ 96 (450)
T PRK14106 72 VVVSPGVPLDSP-PVVQAHKKGIEVI 96 (450)
T ss_pred EEECCCCCCCCH-HHHHHHHCCCcEE
Confidence 887777543444 5566678899987
No 256
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.27 E-value=21 Score=36.07 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=31.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
++++|+|+|-|.++..+++.+++.|+.+.++..+.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 468999999999999999999999999977754443
No 257
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=76.16 E-value=8.8 Score=39.79 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
...++|||.|.|.++..+++.|+.+|.+ ++++.++++......++ +|+.+.. . +....+.+.+.....++|.
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~----~--~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNS----S--GTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcC----C--CcCHHHHHHHHhCCCCCCE
Confidence 3457899999999999999999999996 77775444332222222 2443321 1 1122344555544457999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCc-eeCC
Q 009316 147 LHPGYGFLAENAVFVEMCREHGIN-FIGP 174 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~-~iGp 174 (537)
|+-..|...-.....+.+...|.. ++|.
T Consensus 249 vid~~g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVGRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 998776421112233444555643 3453
No 258
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.06 E-value=10 Score=36.63 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh-cc--CEEEEcCCCCCCCCCCCHHHHHHHHHHc----
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LA--DESVCIGEAPSSQSYLLIPNVLSAAISR---- 142 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-~a--d~~~~i~~~~~~~sy~~~~~i~~~a~~~---- 142 (537)
.+++||.|. |.++..+++.+.+.|++++++..+.+....... +. .....+ .-+..+.+.+.++.++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAV-----AADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEE-----ECCCCCHHHHHHHHHHHHHHh
Confidence 368999995 889999999999999998888655432211111 11 111111 11355666666655443
Q ss_pred -CCCEEEeCCCc
Q 009316 143 -GCTMLHPGYGF 153 (537)
Q Consensus 143 -~~d~V~pg~g~ 153 (537)
++|+|+-.-|.
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 68988865543
No 259
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=75.92 E-value=9.1 Score=40.43 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=57.6
Q ss_pred CCCEEEEEc--CcHHHHHHHHHHHHcCCcEEEEec-------CC--C-CCCchhhccCEEEEcCCCCCC---CCC-CCHH
Q 009316 70 RQEKILVAN--RGEIAVRVIRTAHEMGIPCVAVYS-------TI--D-KDALHVKLADESVCIGEAPSS---QSY-LLIP 133 (537)
Q Consensus 70 ~~~~iLI~~--~g~ia~~ii~aa~~~Gi~~v~v~~-------~~--d-~~~~~~~~ad~~~~i~~~~~~---~sy-~~~~ 133 (537)
.-+|||+.| -......+++...+.|..+|+-.. .. + ...+...+|+.......+.+. ... .-.+
T Consensus 232 ~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~ 311 (380)
T TIGR02263 232 DNCRVIICGMFCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVALAGDPLQNLALAFLHDSISTAAKYDDDEADKGK 311 (380)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCCCCCHHHHHHHHHhhCCCCCccccCCChhhHHH
Confidence 357999999 222346788999999999887622 00 1 223445566655432211110 111 1456
Q ss_pred HHHHHHHHcCCCEEEeC--CC---cccccHHHHHHHHHCCCcee
Q 009316 134 NVLSAAISRGCTMLHPG--YG---FLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~pg--~g---~lsE~~~~a~~~e~~Gl~~i 172 (537)
.|.+++++.++|+|+-- .+ +..|...+.+.+++.|+|++
T Consensus 312 ~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L 355 (380)
T TIGR02263 312 YLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI 355 (380)
T ss_pred HHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence 78999999999999832 00 11233344455555555543
No 260
>PLN02778 3,5-epimerase/4-reductase
Probab=75.88 E-value=12 Score=38.02 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEE
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVA 99 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~ 99 (537)
+.+||||.| .|-++..+++.+.+.|+++++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 357899999 599999999999999998764
No 261
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=75.70 E-value=8.2 Score=41.51 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=53.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh---ccC------E-EEEcCCCCCCCCCCCHHHHHHHHH
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK---LAD------E-SVCIGEAPSSQSYLLIPNVLSAAI 140 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~---~ad------~-~~~i~~~~~~~sy~~~~~i~~~a~ 140 (537)
.||+.|++....+..+.+.+.++|.+++.+.+........-. +.+ . .+.. -.|..++.+.++
T Consensus 303 gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~--------~~d~~e~~~~i~ 374 (435)
T cd01974 303 GKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYP--------GKDLWHLRSLLF 374 (435)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE--------CCCHHHHHHHHh
Confidence 489999998889999999999999999877543321110000 011 1 1111 245667777777
Q ss_pred HcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 141 SRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 141 ~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
+.++|.++-.. .-...++++|++++
T Consensus 375 ~~~pDliiG~s-------~~~~~a~~~gip~v 399 (435)
T cd01974 375 TEPVDLLIGNT-------YGKYIARDTDIPLV 399 (435)
T ss_pred hcCCCEEEECc-------cHHHHHHHhCCCEE
Confidence 77777777432 11244556677664
No 262
>PRK06180 short chain dehydrogenase; Provisional
Probab=75.66 E-value=9.3 Score=37.96 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=29.5
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+++||.|. |.++..+++.+.+.|++++++..+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence 578999994 8899999999999999999986544
No 263
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=75.63 E-value=14 Score=35.13 Aligned_cols=119 Identities=10% Similarity=0.026 Sum_probs=63.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE-e
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH-P 149 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~-p 149 (537)
-+||||+|.|.++..+++.+-..|+..+.+. |.|..+. ..+....+ ... ... .-...+.+.+..++.+.+.-+ +
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lv-D~d~ve~-snL~rqfl-~~~-~di-G~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTIL-DDRTVTE-EDLGAQFL-IPA-EDL-GQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEE-ECCcccH-hhCCCCcc-ccH-HHc-CchHHHHHHHHHHHHCCCCEEEE
Confidence 3689999999999999999999999876654 3332211 11111111 100 000 012345666667777776533 2
Q ss_pred CCCcccccHHHHHHHHHCCCceeCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGP-NPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp-~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
-....+++ ..+.+....+.+... +.++ +....+++.+.|+|..-.
T Consensus 96 ~~~~~~~~--~~~~~~~~dvVi~~~~~~~~------~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 96 DTDDISEK--PEEFFSQFDVVVATELSRAE------LVKINELCRKLGVKFYAT 141 (197)
T ss_pred EecCcccc--HHHHHhCCCEEEECCCCHHH------HHHHHHHHHHcCCCEEEE
Confidence 12223232 123344444444332 2222 233456788899987654
No 264
>PRK09224 threonine dehydratase; Reviewed
Probab=75.60 E-value=22 Score=39.06 Aligned_cols=98 Identities=27% Similarity=0.347 Sum_probs=57.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++-+|+++|++++++-+...+ ..-++.++.+|++++..+.
T Consensus 69 ~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp--------------------------~~K~~~~r~~GA~Vi~~g~ 122 (504)
T PRK09224 69 RGVITASAGNHAQGVALSAARLGIKAVIVMPVTTP--------------------------DIKVDAVRAFGGEVVLHGD 122 (504)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCC--------------------------HHHHHHHHhCCCEEEEECC
Confidence 45888889999999999999999999988532111 1123345566666665443
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+ .+. ....+..++.|..|+.|-.+.....+.+....+++++.+
T Consensus 123 ~~-~~a~~~a~~l~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~ 167 (504)
T PRK09224 123 SF-DEAYAHAIELAEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHP 167 (504)
T ss_pred CH-HHHHHHHHHHHHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhcc
Confidence 22 121 122233344566665443333334455666666666654
No 265
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=75.57 E-value=20 Score=37.35 Aligned_cols=75 Identities=28% Similarity=0.304 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHH--Hc
Q 009316 68 TCRQEKILVANR-GEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAI--SR 142 (537)
Q Consensus 68 ~~~~~~iLI~~~-g~ia~~ii~aa~~~G-i~~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~--~~ 142 (537)
.+..++|||.|+ |..+..+++-|+..| ..++++.+ .+......++ ||+.+ +|.+.+-+....+ ..
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s-~e~~~l~k~lGAd~vv---------dy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS-KEKLELVKKLGADEVV---------DYKDENVVELIKKYTGK 224 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc-cchHHHHHHcCCcEee---------cCCCHHHHHHHHhhcCC
Confidence 444678888884 678999999999999 55555543 3322222222 56555 3777444433333 34
Q ss_pred CCCEEEeCCC
Q 009316 143 GCTMLHPGYG 152 (537)
Q Consensus 143 ~~d~V~pg~g 152 (537)
++|.|+=.-|
T Consensus 225 ~~DvVlD~vg 234 (347)
T KOG1198|consen 225 GVDVVLDCVG 234 (347)
T ss_pred CccEEEECCC
Confidence 7999986654
No 266
>PRK12829 short chain dehydrogenase; Provisional
Probab=75.22 E-value=8.6 Score=37.55 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=47.0
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh-ccC---EEEEcCCCCCCCCCCCHHHHHHHHHH---
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LAD---ESVCIGEAPSSQSYLLIPNVLSAAIS--- 141 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-~ad---~~~~i~~~~~~~sy~~~~~i~~~a~~--- 141 (537)
+.+++||.| .|.++..+++.+.+.|++++++..+......... ..+ ..+.. +..|.+.+.++..+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVA-------DVADPAQVERVFDTAVE 82 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEc-------cCCCHHHHHHHHHHHHH
Confidence 457899999 4889999999999999998888654321111111 111 12222 34566665554433
Q ss_pred --cCCCEEEeCCC
Q 009316 142 --RGCTMLHPGYG 152 (537)
Q Consensus 142 --~~~d~V~pg~g 152 (537)
.++|+|+-..|
T Consensus 83 ~~~~~d~vi~~ag 95 (264)
T PRK12829 83 RFGGLDVLVNNAG 95 (264)
T ss_pred HhCCCCEEEECCC
Confidence 37899885544
No 267
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=75.09 E-value=14 Score=36.89 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=49.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~--Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
+||.|+|.|.++..+++.+.+. +++++.++ +.+... ...+++.. + ...|.+.++++ .++|+|+-
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~-a~~~a~~~---~----~~~~~~~~ell-----~~~DvVvi 67 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFY-DRNLEK-AENLASKT---G----AKACLSIDELV-----EDVDLVVE 67 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEE-CCCHHH-HHHHHHhc---C----CeeECCHHHHh-----cCCCEEEE
Confidence 5899999999999999998876 47777665 222211 11222211 0 11355666664 35898875
Q ss_pred CCCcccccHHHHHHHHHCCCcee
Q 009316 150 GYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
+... ....+++..+.+.|..++
T Consensus 68 ~a~~-~~~~~~~~~al~~Gk~Vv 89 (265)
T PRK13304 68 CASV-NAVEEVVPKSLENGKDVI 89 (265)
T ss_pred cCCh-HHHHHHHHHHHHcCCCEE
Confidence 4321 112344444455676655
No 268
>PRK06398 aldose dehydrogenase; Validated
Probab=75.05 E-value=26 Score=34.34 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=28.5
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|++++++..+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 47899999 4789999999999999999887643
No 269
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=74.94 E-value=17 Score=37.73 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=36.9
Q ss_pred EEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHH---HHhcCCCcEEEEecccC
Q 009316 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEA---AAAFGNDGVYLEKYVQN 274 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~---~~~~g~~~vlvEe~I~g 274 (537)
|+||+..|+-|.||..|++.+|+...=.+-+..- +....-.+++|||=|.-
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T 313 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT 313 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcce
Confidence 8999999999999999999999987655433211 11112358999986654
No 270
>PRK06382 threonine dehydratase; Provisional
Probab=74.86 E-value=27 Score=37.22 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=63.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++-+|+.+|++++++-+... ...-++..+.+|++.+..+.
T Consensus 74 ~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~--------------------------~~~k~~~~~~~GA~Vv~~~~ 127 (406)
T PRK06382 74 NGVITASAGNHAQGVAYAASINGIDAKIVMPEYT--------------------------IPQKVNAVEAYGAHVILTGR 127 (406)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC--------------------------HHHHHHHHHHcCCEEEEECC
Confidence 3488888999999999999999999998842211 11234557788998887654
Q ss_pred CcccccHH-HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAENAV-FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~~~-~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+. +... ..++.++.|..|+-|--......+.+....+++++.+
T Consensus 128 ~~~-~a~~~a~~la~~~~~~~v~~~~~~~~i~g~~t~~~Ei~eq~~ 172 (406)
T PRK06382 128 DYD-EAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLEIMEDLP 172 (406)
T ss_pred CHH-HHHHHHHHHHHhcCCEecCccCChHHHHHHHHHHHHHHHhcC
Confidence 331 2222 3334455677666443333445566778888887764
No 271
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=74.80 E-value=21 Score=36.90 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCE-EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHH
Q 009316 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-SVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAV 159 (537)
Q Consensus 81 ~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~-~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~~ 159 (537)
+.|.++|++|++.|.+.|=+.+. ........-... .+... +.|. -..+.+..++.. +| ..+...
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~-~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~----l~----~e~~~~ 80 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTF-KAEDLVSKNAPKAEYQKI-----NTGA-EESQLEMLKKLE----LS----EEDHRE 80 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeC-CHHHhhCccccccccccc-----CCcC-CCcHHHHHHHhC----CC----HHHHHH
Confidence 46999999999999887766431 111111111111 11110 0121 123444444421 11 112357
Q ss_pred HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEE
Q 009316 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL 239 (537)
Q Consensus 160 ~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~ 239 (537)
+.+.|++.|+.|+-.+. |... -+++.+.|++..+--...+++.. +.+.+.+.|-|+++| .|+
T Consensus 81 L~~~~~~~Gi~~~stpf-------d~~s-vd~l~~~~v~~~KIaS~~~~n~p-LL~~~A~~gkPvilS-------tGm-- 142 (329)
T TIGR03569 81 LKEYCESKGIEFLSTPF-------DLES-ADFLEDLGVPRFKIPSGEITNAP-LLKKIARFGKPVILS-------TGM-- 142 (329)
T ss_pred HHHHHHHhCCcEEEEeC-------CHHH-HHHHHhcCCCEEEECcccccCHH-HHHHHHhcCCcEEEE-------CCC--
Confidence 88999999999874332 2222 25677888886442213455655 445555789999998 565
Q ss_pred eCCHHHHHHHHHHHHH
Q 009316 240 AKEPDEFVKLLQQAKS 255 (537)
Q Consensus 240 v~~~~el~~~~~~~~~ 255 (537)
.+.+|+..+++.+.+
T Consensus 143 -atl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 143 -ATLEEIEAAVGVLRD 157 (329)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 389999999988764
No 272
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=74.78 E-value=16 Score=39.50 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=57.1
Q ss_pred CCEEEEEcCcHHHHH-HHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 71 QEKILVANRGEIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~-ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
.++|+|+|-|.++.. +++.++++|++|.+.+..... ....+...-+.+.. .+ +.+.+ .++|.|+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~--~~~~l~~~gi~~~~-----~~-~~~~~------~~~d~vv~ 72 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA--VTQRLLELGAIIFI-----GH-DAENI------KDADVVVY 72 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh--HHHHHHHCCCEEeC-----CC-CHHHC------CCCCEEEE
Confidence 468999999999999 799999999999887432221 11122111111100 01 22222 35899988
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHH
Q 009316 150 GYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i 179 (537)
..|.-..++.+ +.+.+.|+++++ ..+.+
T Consensus 73 spgi~~~~~~~-~~a~~~~i~i~~-~~e~~ 100 (461)
T PRK00421 73 SSAIPDDNPEL-VAARELGIPVVR-RAEML 100 (461)
T ss_pred CCCCCCCCHHH-HHHHHCCCcEEe-HHHHH
Confidence 87765556655 455678999884 44443
No 273
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=74.76 E-value=22 Score=34.66 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
.+.+||+|.|-|.++..+++.+.+.|.+++.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~ 61 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVS 61 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 346899999999999999999999999999774
No 274
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=74.73 E-value=32 Score=37.00 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=29.1
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEec
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.-+||||.| .|.++..+++.+.+.|++|++++.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 346899999 599999999999999999999864
No 275
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=74.61 E-value=48 Score=35.72 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhhccC-EEEEcC--CCCC----CCCCCCHHHHHHHHHHcCCCEEEeCCCccc
Q 009316 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIG--EAPS----SQSYLLIPNVLSAAISRGCTMLHPGYGFLA 155 (537)
Q Consensus 83 a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad-~~~~i~--~~~~----~~sy~~~~~i~~~a~~~~~d~V~pg~g~ls 155 (537)
...+++.+++.|+++.++.+....... ... ..+.+. +.+. .-++.....+..++++.++|.||.......
T Consensus 80 ~~~l~~~L~~~G~eV~vlt~~~~~~~~---~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~ 156 (465)
T PLN02871 80 FQNFIRYLREMGDEVLVVTTDEGVPQE---FHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIM 156 (465)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCcc---ccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchh
Confidence 467788999999999999765432111 110 011000 0000 011222236778888899999996532111
Q ss_pred ccHHHHHHHHHCCCcee
Q 009316 156 ENAVFVEMCREHGINFI 172 (537)
Q Consensus 156 E~~~~a~~~e~~Gl~~i 172 (537)
- ......+...|++++
T Consensus 157 ~-~~~~~~ak~~~ip~V 172 (465)
T PLN02871 157 V-FGALFYAKLLCVPLV 172 (465)
T ss_pred H-HHHHHHHHHhCCCEE
Confidence 1 111223456677765
No 276
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=74.58 E-value=20 Score=38.55 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=53.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHH---HcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAH---EMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~---~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+.+..+ ..|++++.+.+++|... .... ..-+.+.+++.+.++++++|.|
T Consensus 124 ~rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~---~i~g----------vpVlG~~~dl~~~v~~~~Id~V 190 (442)
T TIGR03013 124 KRRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA---YVPS----------EHVIENGDGLVEYVLRHRIDEI 190 (442)
T ss_pred CCcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc---ccCC----------CcccCCHHHHHHHHHhCCCCEE
Confidence 367999999999998844333 25899988764332221 1111 1124567889999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHCCCce
Q 009316 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (537)
Q Consensus 148 ~pg~g~lsE~--~~~a~~~e~~Gl~~ 171 (537)
+-......+. ......|+..|+.+
T Consensus 191 iIAlp~~~~~~~~~~l~~~~~~gv~V 216 (442)
T TIGR03013 191 VIALDERRGSLPVDELLECKLSGIEV 216 (442)
T ss_pred EEECchhhcchHHHHHHHHHhCCCEE
Confidence 7543211111 12234566666644
No 277
>PRK08264 short chain dehydrogenase; Validated
Probab=74.53 E-value=23 Score=33.97 Aligned_cols=75 Identities=17% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCC-cEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc-CCCEE
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML 147 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi-~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~-~~d~V 147 (537)
.+++||.| .|.++..+++.+.+.|+ +++++..+.+.... ..+....+. .+..+.+.+.++.+.. .+|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~-----~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQ-----LDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEE-----ecCCCHHHHHHHHHhcCCCCEE
Confidence 36899999 58899999999999999 88777654432211 111111111 1345666776666554 47888
Q ss_pred EeCCCc
Q 009316 148 HPGYGF 153 (537)
Q Consensus 148 ~pg~g~ 153 (537)
+-..|.
T Consensus 78 i~~ag~ 83 (238)
T PRK08264 78 VNNAGI 83 (238)
T ss_pred EECCCc
Confidence 755544
No 278
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.50 E-value=13 Score=35.38 Aligned_cols=34 Identities=6% Similarity=0.003 Sum_probs=29.2
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 47899999 48899999999999999998886544
No 279
>PRK08643 acetoin reductase; Validated
Probab=74.30 E-value=9.9 Score=37.05 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.2
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
|.|++||.| .+.++..+++.+.+.|++++++..+.
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~ 36 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 57899999999999999998886443
No 280
>PLN02206 UDP-glucuronate decarboxylase
Probab=74.19 E-value=21 Score=38.53 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=28.8
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEe
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
..+||||.| .|-++..+++.+.+.|++|++++
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 357899999 59999999999999999999885
No 281
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=74.16 E-value=21 Score=31.70 Aligned_cols=29 Identities=10% Similarity=0.302 Sum_probs=25.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
||+|+|.|.++..+++.+-+.|+.-+.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~iv 29 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLI 29 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999644443
No 282
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=74.06 E-value=17 Score=37.63 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=28.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
+|||||.|+ |-++..+++.+.+.|++|++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 478999995 99999999999999999998864
No 283
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=73.95 E-value=18 Score=39.84 Aligned_cols=70 Identities=17% Similarity=0.075 Sum_probs=45.2
Q ss_pred CCEEEEEcCcHHHHHHHHHH-HHcCCcEEEEecCCCCCCch-----hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009316 71 QEKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDALH-----VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa-~~~Gi~~v~v~~~~d~~~~~-----~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~ 144 (537)
.||+.|.+.+..+..+.+.+ +++|++++.+.+..+..... ..++++.... .|...+.+.+++.++
T Consensus 305 Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~~~~~~i~---------~D~~ei~~~I~~~~p 375 (513)
T CHL00076 305 GKKAVVFGDATHAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGFCDEILIT---------DDHTEVGDMIARVEP 375 (513)
T ss_pred CCEEEEEcCchHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHHhccCcEEe---------cCHHHHHHHHHhcCC
Confidence 48999999999999999988 69999998764332221111 1223332221 245666666677777
Q ss_pred CEEEe
Q 009316 145 TMLHP 149 (537)
Q Consensus 145 d~V~p 149 (537)
|.|+-
T Consensus 376 dliiG 380 (513)
T CHL00076 376 SAIFG 380 (513)
T ss_pred CEEEE
Confidence 77774
No 284
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=73.94 E-value=16 Score=38.90 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchh----hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~----~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.+|+.|.+.+.....+++.++++|++++.+.+......... ...+..+.+ ...|...+.+.+++.++|.
T Consensus 287 gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~-------~~~~~~e~~~~i~~~~pDl 359 (410)
T cd01968 287 GKKAALYTGGVKSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIV-------DDANPRELKKLLKEKKADL 359 (410)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEE-------eCCCHHHHHHHHhhcCCCE
Confidence 57899998888889999999999999988854322211111 111122222 1357778888888889999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
++.+.. | ...+++.|++++
T Consensus 360 ~ig~s~---~----~~~a~~~gip~~ 378 (410)
T cd01968 360 LVAGGK---E----RYLALKLGIPFC 378 (410)
T ss_pred EEECCc---c----hhhHHhcCCCEE
Confidence 985421 2 245667888887
No 285
>PRK06194 hypothetical protein; Provisional
Probab=73.90 E-value=17 Score=36.15 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
..+++||.|. |.++..+++.+.+.|+++++++.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999994 889999999999999999888643
No 286
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=73.88 E-value=31 Score=34.41 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=65.9
Q ss_pred CEEEEEc-CcHHHHHHHHHHHH-cCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 72 EKILVAN-RGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~-~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
.||.|+| .|.++..+++.+.+ -+++++++....+.......... ..-..+ ....-|.+.+.+ ...+|+|+=
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~-~~~~~~-~gv~~~~d~~~l-----~~~~DvVId 74 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGE-LAGIGK-VGVPVTDDLEAV-----ETDPDVLID 74 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHH-hcCcCc-CCceeeCCHHHh-----cCCCCEEEE
Confidence 4899999 69999999999886 58999987642332211111110 000000 001124555555 245888873
Q ss_pred CCCcccccHHHHHHHHHCCCcee-CCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 009316 150 GYGFLAENAVFVEMCREHGINFI-GPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl~~i-Gp~~~~i~~~~dK~~~r~~l~~~Gvpvp~ 201 (537)
... -.-..+.+..+.+.|++++ |.+. . ...+...+.+.+++.|+++.-
T Consensus 75 fT~-p~~~~~~~~~al~~g~~vVigttg--~-~~e~~~~l~~aA~~~g~~v~~ 123 (266)
T TIGR00036 75 FTT-PEGVLNHLKFALEHGVRLVVGTTG--F-SEEDKQELADLAEKAGIAAVI 123 (266)
T ss_pred CCC-hHHHHHHHHHHHHCCCCEEEECCC--C-CHHHHHHHHHHHhcCCccEEE
Confidence 221 0111456677788888766 4331 1 122455566777888877643
No 287
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.73 E-value=14 Score=36.22 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=29.2
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.|. +.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999995 8899999999999999988886543
No 288
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.71 E-value=35 Score=33.76 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=78.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCEEEeC--------CCcc--cc--cHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHH
Q 009316 122 EAPSSQSYLLIPNVLSAAISRGCTMLHPG--------YGFL--AE--NAVFVEMCREHGINFIGPNPDSIRIMGDKSTAR 189 (537)
Q Consensus 122 ~~~~~~sy~~~~~i~~~a~~~~~d~V~pg--------~g~l--sE--~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r 189 (537)
.+...+|+.-...+.+.+++.++..+.-| |.|. .+ ...+.+.+++.|++++- ...|.....
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T-------ev~d~~~v~ 93 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS-------EIMSERQLE 93 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE-------eeCCHHHHH
Confidence 34666677666777777888888888755 2221 11 14677888999999872 223445455
Q ss_pred HHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCc-EEE
Q 009316 190 ETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYL 268 (537)
Q Consensus 190 ~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~-vlv 268 (537)
.+.+...+-..+. ....+.+ +.+.+.+.|.||+|| +|+. .+.+|+..+++.+... |+.+ +++
T Consensus 94 ~~~e~vdilqIgs--~~~~n~~-LL~~va~tgkPVilk-------~G~~--~t~~e~~~A~e~i~~~-----Gn~~i~L~ 156 (250)
T PRK13397 94 EAYDYLDVIQVGA--RNMQNFE-FLKTLSHIDKPILFK-------RGLM--ATIEEYLGALSYLQDT-----GKSNIILC 156 (250)
T ss_pred HHHhcCCEEEECc--ccccCHH-HHHHHHccCCeEEEe-------CCCC--CCHHHHHHHHHHHHHc-----CCCeEEEE
Confidence 4444222222333 4456654 555556779999999 3422 4789999998887643 4544 444
Q ss_pred EecccC
Q 009316 269 EKYVQN 274 (537)
Q Consensus 269 Ee~I~g 274 (537)
|+-+.+
T Consensus 157 eRg~~~ 162 (250)
T PRK13397 157 ERGVRG 162 (250)
T ss_pred ccccCC
Confidence 445544
No 289
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=73.67 E-value=6.6 Score=34.83 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=28.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
..+++||+|.|..+..++.++.++|.+-+.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEE
Confidence 35899999999999999999999999955554
No 290
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=73.41 E-value=23 Score=39.12 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCchh-----hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009316 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHV-----KLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~-~~Gi~~v~v~~~~d~~~~~~-----~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~ 143 (537)
..||+.|.+....+..+.+.+. ++|++++.+.+......... .+.++... -.|..++.+.+++.+
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i---------~~D~~el~~~i~~~~ 362 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALI---------TDDYLEVEDAIAEAA 362 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEE---------ecCHHHHHHHHHhcC
Confidence 3579999999999999999998 79999987754222111111 12233222 124567777777777
Q ss_pred CCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 144 ~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
+|+|+.++ . | ...++++|++++
T Consensus 363 PdliiG~~-~--e----r~~a~~lgiP~~ 384 (519)
T PRK02910 363 PELVLGTQ-M--E----RHSAKRLGIPCA 384 (519)
T ss_pred CCEEEEcc-h--H----HHHHHHcCCCEE
Confidence 88887432 1 1 124455666653
No 291
>PRK07806 short chain dehydrogenase; Provisional
Probab=73.40 E-value=15 Score=35.47 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
-+++||.|. |.++..+++.+.+.|++++++..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 478999995 88999999999999999888754
No 292
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=73.32 E-value=18 Score=38.74 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=54.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCchhh-----ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009316 71 QEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHVK-----LADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~-~~Gi~~v~v~~~~d~~~~~~~-----~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~ 144 (537)
.+|+.|.+....+..+.+.+. ++|.+++.+.+.......+.+ +.+..+. ..|..++.+..++.++
T Consensus 301 gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~~~~~~~~~~~~~~~~~~~~~~~~i---------~~D~~e~~~~i~~~~p 371 (430)
T cd01981 301 GKRAFVFGDATHVAAATRILAREMGFRVVGAGTYCKEDAKWFREQATGYCDEALI---------TDDHTEVGDMIARTEP 371 (430)
T ss_pred CCeEEEEcChHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHhcCCceEE---------ecCHHHHHHHHHhhCC
Confidence 578999998888999999885 999999987654332221111 2333332 1355677777788888
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 145 d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
|.++-+. .-...+++.|++++
T Consensus 372 dliig~~-------~~~~~a~~~gip~~ 392 (430)
T cd01981 372 ELIFGTQ-------MERHIGKRLDIPCA 392 (430)
T ss_pred CEEEecc-------hhhHHHHHcCCCEE
Confidence 8888432 11223456676653
No 293
>PRK08198 threonine dehydratase; Provisional
Probab=73.26 E-value=23 Score=37.57 Aligned_cols=98 Identities=23% Similarity=0.286 Sum_probs=62.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.+.|+.+..|..+..++.+|+.+|++++++-+... ...-++..+.+|++.+..+
T Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~--------------------------~~~k~~~~~~~GA~Vi~~~ 123 (404)
T PRK08198 70 ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETA--------------------------PLSKVKATRSYGAEVVLHG 123 (404)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC--------------------------CHHHHHHHHhCCCEEEEEC
Confidence 36799999999999999999999999998842211 1123556677888888765
Q ss_pred CCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 151 YGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 151 ~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
.++ .|. ....+.+++.|..|+.|-.+.....+.+....+++++.
T Consensus 124 ~~~-~~~~~~a~~~~~~~g~~~~~~~~~~~~~~g~~t~a~EI~~q~ 168 (404)
T PRK08198 124 DVY-DEALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLEILEDL 168 (404)
T ss_pred CCH-HHHHHHHHHHHHhcCCEecCCCCCccHHHHHHHHHHHHHHhC
Confidence 333 222 23334556667766544222223344566677777664
No 294
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=73.08 E-value=7.4 Score=41.28 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=51.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC-CCC--Cchhh-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI-DKD--ALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~-d~~--~~~~~-~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+..+..+++.+.++|++++.+.+.. +.. ..... +.+....+ +-.|.+.+.+.+++.++|.
T Consensus 276 Gkrv~i~g~~~~~~~la~~L~elGm~vv~~~t~~~~~~~~~~~~~~l~~~~~v~-------~~~d~~~l~~~i~~~~pDl 348 (396)
T cd01979 276 GKSIFFMGDNLLEIPLARFLTRCGMIVVEVGTPYLDKRFQAAELELLPPMVRIV-------EKPDNYRQLDRIRELRPDL 348 (396)
T ss_pred CCEEEEECCchHHHHHHHHHHHCCCEEEeeCCCcCChHHHHHHHHhcCCCCeEE-------ECCCHHHHHHHHHhcCCCE
Confidence 5799999998899999999999999999885421 111 10111 11222212 2357888899999999999
Q ss_pred EEeCC
Q 009316 147 LHPGY 151 (537)
Q Consensus 147 V~pg~ 151 (537)
++.++
T Consensus 349 li~~~ 353 (396)
T cd01979 349 VVTGL 353 (396)
T ss_pred EEecc
Confidence 99764
No 295
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=73.07 E-value=14 Score=37.84 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~ 106 (537)
+||++.|..+.+..+++++.+.|+++++|.+.+|.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~ 35 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDK 35 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 48999999999999999999999999999877664
No 296
>PRK12483 threonine dehydratase; Reviewed
Probab=73.06 E-value=23 Score=38.99 Aligned_cols=98 Identities=21% Similarity=0.336 Sum_probs=58.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+-+..|.-|..++-+|+.+|++++++-+...+ ..-++..+.+|++.+..+-
T Consensus 86 ~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp--------------------------~~Kv~~~r~~GAeVil~g~ 139 (521)
T PRK12483 86 RGVITASAGNHAQGVALAAARLGVKAVIVMPRTTP--------------------------QLKVDGVRAHGGEVVLHGE 139 (521)
T ss_pred CcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCC--------------------------HHHHHHHHHCCCEEEEECC
Confidence 34888889999999999999999999988432211 1123455666666666543
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+ .|. ....+..++.|..|+.|-.+.....+.+....+++++.+
T Consensus 140 ~~-d~a~~~A~~la~e~g~~~v~pfdd~~viaGqgTig~EI~eQ~~ 184 (521)
T PRK12483 140 SF-PDALAHALKLAEEEGLTFVPPFDDPDVIAGQGTVAMEILRQHP 184 (521)
T ss_pred CH-HHHHHHHHHHHHhcCCeeeCCCCChHHHHHHHHHHHHHHHHhC
Confidence 22 122 122234445566666543333344455666667766654
No 297
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.98 E-value=16 Score=35.23 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=28.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.+++||.| .|.++..+++.+.+.|++++++..+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999 4899999999999999998888544
No 298
>PRK08223 hypothetical protein; Validated
Probab=72.94 E-value=22 Score=36.03 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC---CCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE-
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID---KDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM- 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d---~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~- 146 (537)
-.+|||+|.|.++..++..+.++|+..+.+. |.| ....+.++....-.+| -...+...+.+++.+.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lv-D~D~Ve~SNLnRQ~l~~~~diG-------~~Kve~a~~~l~~iNP~v~ 98 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIA-DFDVFELRNFNRQAGAMMSTLG-------RPKAEVLAEMVRDINPELE 98 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEE-eCCCcchhccccccCcChhHCC-------CcHHHHHHHHHHHHCCCCE
Confidence 3689999999999999999999999887665 333 2223333221111122 234555556666655443
Q ss_pred EEeCCCccc-ccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 147 LHPGYGFLA-ENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 147 V~pg~g~ls-E~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
|.+-...++ ++ +.+.++..-+.+-+-+.- ...-+....+.+.++|+|..-+
T Consensus 99 V~~~~~~l~~~n--~~~ll~~~DlVvD~~D~~---~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 99 IRAFPEGIGKEN--ADAFLDGVDVYVDGLDFF---EFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred EEEEecccCccC--HHHHHhCCCEEEECCCCC---cHHHHHHHHHHHHHcCCCEEEE
Confidence 222112222 33 233444433332221110 0122567777889999998765
No 299
>PLN00198 anthocyanidin reductase; Provisional
Probab=72.87 E-value=18 Score=36.99 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.++|||.| .|-++..+++.+.+.|++++++..+.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCC
Confidence 57899999 58899999999999999988775443
No 300
>PRK08329 threonine synthase; Validated
Probab=72.64 E-value=31 Score=35.87 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHH-HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 134 NVLSAAISRGCTMLHPGYGFLAENAVF-VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~pg~g~lsE~~~~-a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.-+...+.+|++.+.....+ .+.... .+..++.|..++.+........+.|....+++++.+
T Consensus 141 ~k~~~~~~~GA~v~~v~~~~-~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~ 203 (347)
T PRK08329 141 EKISLLSRLGAELHFVEGDR-MEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIG 203 (347)
T ss_pred HHHHHHHHcCCEEEEECCCH-HHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHHcC
Confidence 34455566777776532111 111122 222334454444333233444555666666666554
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=72.64 E-value=11 Score=39.37 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=55.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEe-cCCCCCCchhh-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVY-STIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~-~~~d~~~~~~~-~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
.+|+|+|.|+++.-.+..++.+|...|++. .++++.....+ .....+.. ..++ ...+.+.++....++|.++=
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~----~~~~-~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN----PSED-DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec----Cccc-cHHHHHHHHhCCCCCCEEEE
Confidence 389999999999999999999998776653 33444444444 33333321 1111 23344444444457999998
Q ss_pred CCCcccccHHHHHHHHHCCC
Q 009316 150 GYGFLAENAVFVEMCREHGI 169 (537)
Q Consensus 150 g~g~lsE~~~~a~~~e~~Gl 169 (537)
..|..+-.....+++...|.
T Consensus 245 ~~G~~~~~~~ai~~~r~gG~ 264 (350)
T COG1063 245 AVGSPPALDQALEALRPGGT 264 (350)
T ss_pred CCCCHHHHHHHHHHhcCCCE
Confidence 77732111234455555553
No 302
>PRK12743 oxidoreductase; Provisional
Probab=72.57 E-value=19 Score=35.21 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.4
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
|.|++||.|. +.++..+++.+.+.|+++++++.
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4578999994 77999999999999999988753
No 303
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.53 E-value=11 Score=40.42 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
..++|+|+|.|.++..+++.++.+|.+|++++.++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 35899999999999999999999999877774433
No 304
>PRK09135 pteridine reductase; Provisional
Probab=72.50 E-value=17 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.3
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.+++||.| .|.++..+++.+.+.|++++++..
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 47899999 588999999999999999998864
No 305
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=72.42 E-value=28 Score=37.31 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=53.0
Q ss_pred CCEEEEEcCcHHHHHHHHHH-HHcCCcEEEEecCCCCCCchhh----------ccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009316 71 QEKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDALHVK----------LADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa-~~~Gi~~v~v~~~~d~~~~~~~----------~ad~~~~i~~~~~~~sy~~~~~i~~~a 139 (537)
.+|+.|.+....+..+.+.+ +++|..++++............ +.++.+. ..|...+.+.+
T Consensus 293 ~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~D~~~~~~~i 363 (427)
T cd01971 293 PRRFAVIADSTYALGLARFLVNELGWVPAKQVITDNPPEKYRSAIENEFEAEGVSAEVVF---------SEDGYAIGQSL 363 (427)
T ss_pred CceEEEECChHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHhcCCCCcEEE---------ecCHHHHHHHH
Confidence 38899999999999999999 5999999877543332221111 2233332 23566777776
Q ss_pred HHcC----CCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 140 ISRG----CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 140 ~~~~----~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
++.+ +|.|+-+. .-...++++|++++
T Consensus 364 ~~~~~~~~~dliig~s-------~~~~~a~~~~ip~i 393 (427)
T cd01971 364 RQSDFKYKPPIIFGSS-------WERDLAKELGGKIL 393 (427)
T ss_pred HhCCCCCCCCEEEech-------HHHHHHHHcCCCeE
Confidence 6654 78877421 12234456677664
No 306
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=72.38 E-value=18 Score=33.10 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
|++|.++|-|..+..+++.+.+.|+++.+.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeec
Confidence 5899999999999999999999999988764
No 307
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=72.36 E-value=13 Score=37.95 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=31.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~ 106 (537)
+||+++|.++.+..+++++.+.|++++.|.+.++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~ 35 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDR 35 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 48999999999999999999999999988876653
No 308
>PRK09620 hypothetical protein; Provisional
Probab=72.28 E-value=13 Score=36.32 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 80 GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 80 g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|-++..+++++.+.|++|++++..
T Consensus 29 GfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 29 GTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 788999999999999999999743
No 309
>PRK06138 short chain dehydrogenase; Provisional
Probab=72.28 E-value=12 Score=36.08 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=28.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 36899999 48899999999999999998886543
No 310
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=72.11 E-value=26 Score=36.81 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=58.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch------hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH------VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~------~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~ 144 (537)
.+++.|.+.+..+..+++.++++|.+++.+.+........ .....+.+ . -.|.+.+.+.+++.++
T Consensus 279 g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~d~~~~~~~~~~~~p 349 (399)
T cd00316 279 GKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYERREELLGEGTEVV-D--------DGDLEELEELIRELKP 349 (399)
T ss_pred CCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHhcCCCCEEE-e--------CCCHHHHHHHHhhcCC
Confidence 5789999988888888999999999988876544333221 11122222 1 3578889999999999
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 145 d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
|.++.+. .....+++.|++++
T Consensus 350 dl~ig~~-------~~~~~~~~~~ip~~ 370 (399)
T cd00316 350 DLIIGGS-------KGRYIAKKLGIPLV 370 (399)
T ss_pred CEEEECC-------cHHHHHHHhCCCEE
Confidence 9999542 12344556688775
No 311
>PRK06953 short chain dehydrogenase; Provisional
Probab=72.09 E-value=16 Score=34.72 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.7
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
|+++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~ 35 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDA 35 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH
Confidence 47899998 68899999999999999998886543
No 312
>PLN02686 cinnamoyl-CoA reductase
Probab=72.08 E-value=16 Score=38.14 Aligned_cols=37 Identities=5% Similarity=0.081 Sum_probs=30.6
Q ss_pred CCCCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009316 66 KVTCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 66 ~~~~~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
....+.|+|||.|+ |-++..+++.+.+.|++|+++..
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 33445789999995 89999999999999999987643
No 313
>PRK07236 hypothetical protein; Provisional
Probab=71.95 E-value=7.7 Score=40.75 Aligned_cols=34 Identities=6% Similarity=-0.108 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
++..+|+|+|+|..+.-++..+++.|++|+++..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 4567899999999999999999999999999853
No 314
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=71.56 E-value=20 Score=36.83 Aligned_cols=72 Identities=14% Similarity=-0.044 Sum_probs=44.1
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEE-EecCCCCCC-chh-hc---cC-EEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVA-VYSTIDKDA-LHV-KL---AD-ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~-v~~~~d~~~-~~~-~~---ad-~~~~i~~~~~~~sy~~~~~i~~~a~~~~ 143 (537)
+||||.|+ |.++..+++.+.+.|+.+++ +........ ... .+ .+ +.+.. +..|.+.+.++.+..+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~ 73 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHA-------DICDRAELDRIFAQHQ 73 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEe-------cCCCHHHHHHHHHhcC
Confidence 37999995 99999999999999987554 321111010 000 11 01 11222 3567778888777778
Q ss_pred CCEEEeC
Q 009316 144 CTMLHPG 150 (537)
Q Consensus 144 ~d~V~pg 150 (537)
+|.|+-.
T Consensus 74 ~d~vih~ 80 (352)
T PRK10084 74 PDAVMHL 80 (352)
T ss_pred CCEEEEC
Confidence 9987644
No 315
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=71.48 E-value=10 Score=38.89 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCc--hh---hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HV---KLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~--~~---~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~ 143 (537)
..++|+|.| .|-||..|++.+-+.||+|.+...+++.... |. .-+.+...+ -..+-++.+.+.+++ .|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l----~~aDL~d~~sf~~ai--~g 78 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKL----FKADLLDEGSFDKAI--DG 78 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceE----EeccccccchHHHHH--hC
Confidence 468999999 5889999999999999999987655443111 21 112221111 112345666777777 46
Q ss_pred CCEEE
Q 009316 144 CTMLH 148 (537)
Q Consensus 144 ~d~V~ 148 (537)
||+|+
T Consensus 79 cdgVf 83 (327)
T KOG1502|consen 79 CDGVF 83 (327)
T ss_pred CCEEE
Confidence 99875
No 316
>PLN00200 argininosuccinate synthase; Provisional
Probab=71.47 E-value=36 Score=36.22 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCCEEEEEcCcHH-HHHHHHHHHHc-CCcEEEEecC
Q 009316 70 RQEKILVANRGEI-AVRVIRTAHEM-GIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~g~i-a~~ii~aa~~~-Gi~~v~v~~~ 103 (537)
|++||+|+=.|.. ..-++..+++. |+++++++-+
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~~G~eViav~id 39 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRENYGCEVVCFTAD 39 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 4568887776554 44444556555 9998888643
No 317
>PRK06179 short chain dehydrogenase; Provisional
Probab=71.17 E-value=27 Score=34.32 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=46.4
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~-----~~~ 144 (537)
.+++||.| .|.++..+++.+.+.|++++++..+.+...... --+.+.. +..|.+.+.++.+. .++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~--~~~~~~~-------D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP--GVELLEL-------DVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC--CCeeEEe-------ecCCHHHHHHHHHHHHHhCCCC
Confidence 36799999 588999999999999999998865443221111 1122322 34555555554443 257
Q ss_pred CEEEeCCCc
Q 009316 145 TMLHPGYGF 153 (537)
Q Consensus 145 d~V~pg~g~ 153 (537)
|.++-.-|.
T Consensus 75 d~li~~ag~ 83 (270)
T PRK06179 75 DVLVNNAGV 83 (270)
T ss_pred CEEEECCCC
Confidence 888765543
No 318
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=71.17 E-value=1e+02 Score=29.84 Aligned_cols=141 Identities=17% Similarity=0.098 Sum_probs=86.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
|.+....+|-=+.-.+-.|-+.|++|+.+.+-...+. |.+-. ...|.+.+...|+..++..+.-..
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~------dS~m~--------H~~n~~~~~~~Ae~~gi~l~~~~~ 67 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENG------DSYMF--------HTPNLELAELQAEAMGIPLVTFDT 67 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCC------Ceeee--------eccchHHHHHHHHhcCCceEEEec
Confidence 3333333444345555666788999886643222211 11111 135777888888888888665432
Q ss_pred -C-cccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 009316 152 -G-FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 152 -g-~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~ 229 (537)
| ...|..++.++++..++..+ ..-++..--.|.+...+|++.|+-+-.. .--.|.+++....-+.||-++|=.+
T Consensus 68 ~g~~e~eve~L~~~l~~l~~d~i--v~GaI~s~yqk~rve~lc~~lGl~~~~P--LWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 68 SGEEEREVEELKEALRRLKVDGI--VAGAIASEYQKERVERLCEELGLKVYAP--LWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred CccchhhHHHHHHHHHhCcccEE--EEchhhhHHHHHHHHHHHHHhCCEEeec--ccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 2 11233567777887775544 4557777888999999999999887544 3456777776666678887655444
Q ss_pred C
Q 009316 230 A 230 (537)
Q Consensus 230 ~ 230 (537)
+
T Consensus 144 s 144 (223)
T COG2102 144 S 144 (223)
T ss_pred e
Confidence 3
No 319
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=71.17 E-value=20 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=29.1
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|.|++||.| .+.++..+++.+.+.|++++++..+
T Consensus 1 ~~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 357899998 6889999999999999999888654
No 320
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=71.10 E-value=35 Score=35.92 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=62.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++-+|+++|++++++-+... ...-++..+.+|++.+..+.
T Consensus 49 ~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~--------------------------~~~k~~~~~~~GA~V~~~~~ 102 (380)
T TIGR01127 49 RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESA--------------------------PPSKVKATKSYGAEVILHGD 102 (380)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC--------------------------cHHHHHHHHHCCCEEEEECC
Confidence 4588888999999999999999999998743211 12345667888998887654
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+. |. ....+..++.|..|+.|-.+.....+.+....+++++.+
T Consensus 103 ~~~-~a~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~ 147 (380)
T TIGR01127 103 DYD-EAYAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIP 147 (380)
T ss_pred CHH-HHHHHHHHHHHhcCCEecCCCCChhhhhhhHHHHHHHHHhCC
Confidence 332 22 223344455677776443233334555666666666653
No 321
>PRK07074 short chain dehydrogenase; Provisional
Probab=70.91 E-value=18 Score=35.27 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|.+++||.|. |.++..+++.+.+.|++++++..+
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~ 35 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDID 35 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999995 889999999999999998888644
No 322
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=70.90 E-value=44 Score=33.99 Aligned_cols=98 Identities=12% Similarity=-0.003 Sum_probs=49.2
Q ss_pred EEEEEcCcHH-----HHHHHHHHHHcCCcEEEEecCCCCCCchhh-ccCEEEEcCCCCCCCC------------CCCHHH
Q 009316 73 KILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQS------------YLLIPN 134 (537)
Q Consensus 73 ~iLI~~~g~i-----a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-~ad~~~~i~~~~~~~s------------y~~~~~ 134 (537)
||+|+.+|.. +..+++.+++.|+++.++..+......... ..-....+........ ......
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQ 81 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHH
Confidence 6676665543 246899999999999888643221111001 1112222221110001 112335
Q ss_pred HHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 135 i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
+.++.++.++|.||...++. .....-+....|++++
T Consensus 82 l~~~i~~~~pDvVi~~~~~~--~~~~~~~~~~~~~p~v 117 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGGYV--SGPAGLAAKLLGIPLF 117 (348)
T ss_pred HHHHHHhcCCCEEEEcCCcc--cHHHHHHHHHcCCCEE
Confidence 66677888999999754331 1111223344566654
No 323
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.90 E-value=15 Score=35.69 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.9
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
.+++||.| .|.++..+++.+.+.|++++++....+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~ 39 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 37899999 588999999999999999999865543
No 324
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=70.73 E-value=21 Score=38.71 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.+|+.|.+....+..+.+.+.++|++++.+.+...... ...+.+..+.+ .|.+.+.+.++ ++|.++.+
T Consensus 311 gkrvai~~~~~~~~~la~~L~elG~~v~~~~~~~~~~~-~~~~~~~~i~~---------~D~~~le~~~~--~~dliig~ 378 (455)
T PRK14476 311 GKRVAIAAEPDLLLALGSFLAEMGAEIVAAVTTTKSPA-LEDLPAEEVLI---------GDLEDLEELAE--GADLLITN 378 (455)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHCCCEEEEEEeCCCcHH-HHhCCcCcEEe---------CCHHHHHHhcc--CCCEEEEC
Confidence 48899999888999999999999999988776432111 11122212222 24445555443 67777743
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009316 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
. .-...++++|++++
T Consensus 379 s-------~~~~~a~~~gip~~ 393 (455)
T PRK14476 379 S-------HGRQAAERLGIPLL 393 (455)
T ss_pred c-------hhHHHHHHcCCCEE
Confidence 2 12235556676664
No 325
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.71 E-value=32 Score=37.16 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=54.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch--hhcc--CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~--~~~a--d~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.+||+|+|-|..+..+++.+++.|++|.+.+......... ..+. .-.+..+ ....+.+ .++|.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~~~~------~~~dl 80 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLG-------ENYLDKL------DGFDV 80 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeC-------CCChHHh------ccCCE
Confidence 3789999999999999999999999888875332211111 1121 2222222 0112222 35788
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeC
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~iG 173 (537)
|+-..|.-..++. ...+++.|+++++
T Consensus 81 VV~Spgi~~~~p~-~~~a~~~~i~i~s 106 (458)
T PRK01710 81 IFKTPSMRIDSPE-LVKAKEEGAYITS 106 (458)
T ss_pred EEECCCCCCCchH-HHHHHHcCCcEEe
Confidence 8877766544544 4555678999884
No 326
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=70.64 E-value=30 Score=32.71 Aligned_cols=88 Identities=16% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCEEEEEcCcHHHHHHHH--HHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIR--TAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~--aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
+.++.|+|.|.++..++. -.++.|++++.+. +-++.-......| +.+ .+++.+....++.+++..+
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~~VG~~~~~--v~V---------~~~d~le~~v~~~dv~iai 151 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAF-DVDPDKVGTKIGD--VPV---------YDLDDLEKFVKKNDVEIAI 151 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEe-cCCHHHhCcccCC--eee---------echHHHHHHHHhcCccEEE
Confidence 678999999999988774 4678999999876 4454455555666 322 4788999999999998766
Q ss_pred eCCCcccccH-HHHHHHHHCCCcee
Q 009316 149 PGYGFLAENA-VFVEMCREHGINFI 172 (537)
Q Consensus 149 pg~g~lsE~~-~~a~~~e~~Gl~~i 172 (537)
-+. -++++ ..++.+.++|+.-+
T Consensus 152 LtV--Pa~~AQ~vad~Lv~aGVkGI 174 (211)
T COG2344 152 LTV--PAEHAQEVADRLVKAGVKGI 174 (211)
T ss_pred EEc--cHHHHHHHHHHHHHcCCceE
Confidence 432 23553 56778888888643
No 327
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=70.56 E-value=17 Score=37.19 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=85.4
Q ss_pred CCCEEEEEcCcHHH-HHHHHHHHHcC--CcEEEEecCCCCCCch-hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009316 70 RQEKILVANRGEIA-VRVIRTAHEMG--IPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 70 ~~~~iLI~~~g~ia-~~ii~aa~~~G--i~~v~v~~~~d~~~~~-~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d 145 (537)
++.||.|+|.|.++ ...+.++++.+ +.++++++ . +... ..++.+ +.+. ..|.+.+++++ ...+|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d-~--~~~~a~~~a~~-~~~~-----~~~~~~~~ll~---~~~iD 69 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD-R--DPERAEAFAEE-FGIA-----KAYTDLEELLA---DPDID 69 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec-C--CHHHHHHHHHH-cCCC-----cccCCHHHHhc---CCCCC
Confidence 45789999998665 45888888887 46777652 2 2211 222221 2111 35777776654 34489
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCC-CCHHHHHHHHH--hcCC
Q 009316 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL-QSTEEAVKLAD--ELGF 222 (537)
Q Consensus 146 ~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v-~~~~~~~~~~~--~ig~ 222 (537)
+|+-..- ..-+.+.+..+.++|.+++.=.|-+.....=+ .+.+++++.|+..--++.... .....+.+..+ .+|.
T Consensus 70 ~V~Iatp-~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~-~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~ 147 (342)
T COG0673 70 AVYIATP-NALHAELALAALEAGKHVLCEKPLALTLEEAE-ELVELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGE 147 (342)
T ss_pred EEEEcCC-ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHH-HHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcCCcCc
Confidence 8875431 11346777788888987764444333222222 567788888888765543222 23445566555 5777
Q ss_pred cEEEeec
Q 009316 223 PVMIKAT 229 (537)
Q Consensus 223 PvvvKp~ 229 (537)
+..++..
T Consensus 148 v~~~~~~ 154 (342)
T COG0673 148 VVSVQAS 154 (342)
T ss_pred eEEEEEE
Confidence 7777743
No 328
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=70.43 E-value=50 Score=31.82 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=26.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v 100 (537)
|++|||.-.-..+..+.+.++++|++++.+
T Consensus 1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~ 30 (249)
T PRK05928 1 MMKILVTRPSPKAEELVELLRELGFVALHF 30 (249)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEEe
Confidence 478999888788889999999999999876
No 329
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.30 E-value=22 Score=37.96 Aligned_cols=85 Identities=11% Similarity=0.146 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.++|+|+|-|-++..+++.+++.|++++..+...+... .....++.+ ..+.+.+ ..++|.++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~-~~~~~~~~~----------~~~~~~~-----~~~~dlvV~s 66 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQ-SCPYIHERY----------LENAEEF-----PEQVDLVVRS 66 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccc-hhHHHhhhh----------cCCcHHH-----hcCCCEEEEC
Confidence 47899999999999999999999998777643222110 000111100 0111111 1357888887
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009316 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
.|.- ....+.+.+.+.|++++
T Consensus 67 ~gi~-~~~~~l~~A~~~g~~vv 87 (418)
T PRK00683 67 PGIK-KEHPWVQAAIASHIPVV 87 (418)
T ss_pred CCCC-CCcHHHHHHHHCCCcEE
Confidence 7654 33456667778899876
No 330
>PRK07060 short chain dehydrogenase; Provisional
Probab=70.23 E-value=14 Score=35.59 Aligned_cols=75 Identities=13% Similarity=-0.010 Sum_probs=46.3
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCch-hhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-cCCCEE
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS-RGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~-~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~-~~~d~V 147 (537)
.+++||.|. |.++..+++.+.+.|+++++++.+....... .......+.. +..+.+.+.++... .++|.|
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRL-------DVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEe-------cCCCHHHHHHHHHHhCCCCEE
Confidence 378999995 7899999999999999988886433211100 1111223332 24455556665554 357888
Q ss_pred EeCCC
Q 009316 148 HPGYG 152 (537)
Q Consensus 148 ~pg~g 152 (537)
+-.-|
T Consensus 82 i~~ag 86 (245)
T PRK07060 82 VNCAG 86 (245)
T ss_pred EECCC
Confidence 85544
No 331
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=70.19 E-value=38 Score=34.75 Aligned_cols=99 Identities=19% Similarity=0.327 Sum_probs=59.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.+.|+.+..|..+..++-+|+.+|++++++.+... ....++..+.+|++.+..+
T Consensus 51 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~--------------------------~~~k~~~l~~~GA~v~~~~ 104 (316)
T cd06448 51 CVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPEST--------------------------KPRVVEKLRDEGATVVVHG 104 (316)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC--------------------------CHHHHHHHHHcCCEEEEEC
Confidence 56788999999999999999999999998843211 1234566677888877654
Q ss_pred CCcccccHHHHHHHHH-C-CCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 151 YGFLAENAVFVEMCRE-H-GINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~-~-Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
.....+...+++.+.+ . +..++.|........+.+....+++++.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~ 151 (316)
T cd06448 105 KVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIAQQL 151 (316)
T ss_pred CchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHHHHc
Confidence 3211122233333333 3 5555544322233344455555555554
No 332
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.15 E-value=17 Score=37.16 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH---
Q 009316 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS--- 141 (537)
Q Consensus 66 ~~~~~~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~--- 141 (537)
..-++..++||.|.|+|++-.+..||.+|-. +++++..+.+.....++--..+.- ....+ ..+.+.+..++
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~---~~~~~--~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDP---SSHKS--SPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEee---ccccc--cHHHHHHHHHhhcc
Confidence 4455678999999999999999999999975 445544444445555554444421 11111 45555555443
Q ss_pred -cCCCEEEeCCCc
Q 009316 142 -RGCTMLHPGYGF 153 (537)
Q Consensus 142 -~~~d~V~pg~g~ 153 (537)
..+|..+-+.|.
T Consensus 240 ~~~~d~~~dCsG~ 252 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA 252 (354)
T ss_pred ccCCCeEEEccCc
Confidence 337888877665
No 333
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.09 E-value=13 Score=38.85 Aligned_cols=93 Identities=22% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++.-++..|+.+|.. ++++...++......++ +|..+.. .+....+.+.++... ++|.|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~------~~~~~~~~i~~~~~~-g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNA------GDPNAVEQVRELTGG-GVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCC------CchhHHHHHHHHhCC-CCCEE
Confidence 457899999999999999999999994 77775444333222222 2333321 111123444444333 79999
Q ss_pred EeCCCcccccHHHHHHHHHCCC
Q 009316 148 HPGYGFLAENAVFVEMCREHGI 169 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl 169 (537)
+-..|...-.....+.+...|.
T Consensus 264 id~~G~~~~~~~~~~~l~~~G~ 285 (371)
T cd08281 264 FEMAGSVPALETAYEITRRGGT 285 (371)
T ss_pred EECCCChHHHHHHHHHHhcCCE
Confidence 9766532111223345555553
No 334
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=70.07 E-value=15 Score=39.81 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=57.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCch----hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009316 71 QEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALH----VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~-~~Gi~~v~v~~~~d~~~~~----~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d 145 (537)
.||+.|.+.+..+..+.+.+. ++|++++.+.+........ ..+.+..+.++ ..+..++.+.+++.++|
T Consensus 325 GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~~i~-------d~~~~e~~~~i~~~~pD 397 (457)
T TIGR01284 325 GKKVWVWSGGPKLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIID-------DPNELELEEIIEKYKPD 397 (457)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeEEEe-------CCCHHHHHHHHHhcCCC
Confidence 579999988888889999996 7999998875432211111 11223333332 34666788888888999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 146 ~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
.++.+.- | ...++++|++++
T Consensus 398 llig~~~---~----~~~a~k~gip~~ 417 (457)
T TIGR01284 398 IILTGIR---E----GELAKKLGVPYI 417 (457)
T ss_pred EEEecCC---c----chhhhhcCCCEE
Confidence 9996531 2 235567888887
No 335
>PRK07774 short chain dehydrogenase; Provisional
Probab=70.00 E-value=22 Score=34.34 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.|. |.++..+++.+.+.|++++++..+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999995 889999999999999999988654
No 336
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=69.78 E-value=17 Score=37.84 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~-Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
||+||+|+|. |.++..+++.+.++ +++++++.+...... .+++.+-.+.. .....+.+.+.. ...++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~---~l~~~~~~~~~-~~~~~~~~~~~~----~~~~vD~V 72 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK---PLSDVHPHLRG-LVDLVLEPLDPE----ILAGADVV 72 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc---chHHhCccccc-ccCceeecCCHH----HhcCCCEE
Confidence 4579999995 99999999999887 788888765322211 11110000000 001123333332 12469999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCC
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIGPN 175 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iGp~ 175 (537)
+-.... ....+++..+.+.|..++-.+
T Consensus 73 f~alP~-~~~~~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 73 FLALPH-GVSMDLAPQLLEAGVKVIDLS 99 (343)
T ss_pred EECCCc-HHHHHHHHHHHhCCCEEEECC
Confidence 865432 123566666777898888443
No 337
>PRK00509 argininosuccinate synthase; Provisional
Probab=69.63 E-value=36 Score=36.20 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEeC-CCcccccHHH---HHHHH-HCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 009316 132 IPNVLSAAISRGCTMLHPG-YGFLAENAVF---VEMCR-EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (537)
Q Consensus 132 ~~~i~~~a~~~~~d~V~pg-~g~lsE~~~~---a~~~e-~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~ 201 (537)
...++++|++.++++|.-| ++--.+...| .+++. +.+ ++-|=.+ ..+..|...+++++++|||++.
T Consensus 98 ~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~~g~~al~pel~--VisPlre--~~~~tK~eir~~A~~~Gipv~~ 168 (399)
T PRK00509 98 AKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLK--VIAPWRE--WDLKSREELIAYAEEHGIPIPV 168 (399)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCHHHHHHHHHHhCCCCe--eecchhh--cCCCCHHHHHHHHHHcCCCCCC
Confidence 4567777888888877644 2211222344 23333 333 3333222 1233788888888888888764
No 338
>PRK06500 short chain dehydrogenase; Provisional
Probab=69.62 E-value=11 Score=36.44 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=29.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
+.|++||.|. |.++..+++.+.+.|++++++..+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 4578999994 889999999999999998888543
No 339
>PRK07023 short chain dehydrogenase; Provisional
Probab=69.58 E-value=22 Score=34.32 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=28.0
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
+++||.|. |.++..+++.+.+.|++++++..+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 48999995 8899999999999999998886543
No 340
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=69.56 E-value=20 Score=36.20 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=56.0
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 73 ~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+|||.| .|..+..+.+.+. -++++++++... + +..|.+.+.++.++.++|+|+-.-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~-------Ditd~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE---------------L-------DITDPDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------c-------cccChHHHHHHHHhhCCCEEEECc
Confidence 399999 5888999998888 668888874322 2 256788999999999999988553
Q ss_pred Ccc----ccc-------------HHHHHHHHHCCCceeCCCHH
Q 009316 152 GFL----AEN-------------AVFVEMCREHGINFIGPNPD 177 (537)
Q Consensus 152 g~l----sE~-------------~~~a~~~e~~Gl~~iGp~~~ 177 (537)
.+. .|+ ..+|++|.+.|.+++-.|.+
T Consensus 59 Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 59 AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 221 111 13566666777666654544
No 341
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.52 E-value=15 Score=36.11 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=50.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
-=||+|+|..-+.++..++..|+.++.+--..+.+.....+-...+.+ -.+-.++.+.+.+++|-|+-
T Consensus 7 lglIaG~G~LP~~va~~a~~~G~~~~ii~l~~eaD~~~~~~e~~~~~i---------G~vg~lik~l~~~~v~~vVl 74 (279)
T COG3494 7 LGLIAGNGSLPLEVAENARNQGYAPFIIGLRGEADPELKEFEYKEVSI---------GEVGKLIKLLKTEGVDRVVL 74 (279)
T ss_pred EEEEecCCcCcHHHHHHHHhCCCCcEEEEecCccchhhhcCCCeEEeH---------HHHHHHHHHHHHcCCcEEEE
Confidence 357999999999999999999999887765555444333332233433 46889999999999998763
No 342
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.51 E-value=19 Score=39.39 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccC--EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad--~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|+|+|-|.++...++.++..|.++++.+.... ... .+.+ -.+..+ ....+.+ ..+|.|+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~--~~~-~l~~~g~~~~~~-------~~~~~~l------~~~D~VV 75 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPD--ALR-PHAERGVATVST-------SDAVQQI------ADYALVV 75 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHH--HHH-HHHhCCCEEEcC-------cchHhHh------hcCCEEE
Confidence 47899999999999999999999998887642211 111 1111 111111 0111111 3478888
Q ss_pred eCCCcccccHHHHHHHHHCCCceeC
Q 009316 149 PGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~iG 173 (537)
-..|.-..++. .+.+++.|++++|
T Consensus 76 ~SpGi~~~~p~-~~~a~~~gi~v~~ 99 (488)
T PRK03369 76 TSPGFRPTAPV-LAAAAAAGVPIWG 99 (488)
T ss_pred ECCCCCCCCHH-HHHHHHCCCcEee
Confidence 77776555554 4556778999985
No 343
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=69.40 E-value=18 Score=36.23 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=29.3
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 009316 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (537)
Q Consensus 73 ~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~ 106 (537)
+|||.| .|-++..+++.+.+.|++|++++.....
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~ 36 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDG 36 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 499999 4999999999999999999999754443
No 344
>PLN02214 cinnamoyl-CoA reductase
Probab=69.35 E-value=23 Score=36.48 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
++++|||.|+ |-++..+++.+.+.|++|+++....+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~ 45 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPD 45 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence 3578999996 99999999999999999988865433
No 345
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.25 E-value=9.6 Score=37.59 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.8
Q ss_pred CCCCCEEEEEc---CcHHHHHHHHHHHHcCCcEEEEec
Q 009316 68 TCRQEKILVAN---RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 68 ~~~~~~iLI~~---~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
+...|++||.| .+.|+..+++.+.+.|.++++.+.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYV 40 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 34457899999 457999999999999999888753
No 346
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.23 E-value=16 Score=37.63 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.+.++|||.|.|.++..+++.|+.+|.. ++++.+..+.......+ +|..+.. .+....+.+.++....++|.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~------~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDY------KNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecC------CCCCHHHHHHHHhCCCCCcE
Confidence 3457899999999999999999999996 55554443332222222 2333321 11223445555554467999
Q ss_pred EEeCCCcccccHHHHHHHHHCCC
Q 009316 147 LHPGYGFLAENAVFVEMCREHGI 169 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl 169 (537)
++-..|.-.-.....+.+...|.
T Consensus 239 vld~~g~~~~~~~~~~~l~~~G~ 261 (351)
T cd08285 239 VIIAGGGQDTFEQALKVLKPGGT 261 (351)
T ss_pred EEECCCCHHHHHHHHHHhhcCCE
Confidence 99765531111234455555553
No 347
>PRK06841 short chain dehydrogenase; Provisional
Probab=69.02 E-value=16 Score=35.41 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=29.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999 48899999999999999988886543
No 348
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=68.85 E-value=7.1 Score=39.71 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
-+|++|+|.|.++..+++.++.+|.++++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 589999999999999999999999977777443
No 349
>PRK08526 threonine dehydratase; Provisional
Probab=68.85 E-value=46 Score=35.44 Aligned_cols=97 Identities=24% Similarity=0.352 Sum_probs=64.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++-+|+.+|++++++-+... .. .-++..+.+|++.+..+-
T Consensus 69 ~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~-------------------------p~-~k~~~~r~~GA~Vv~~g~ 122 (403)
T PRK08526 69 HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEAT-------------------------PL-LKVSGTKALGAEVILKGD 122 (403)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCC-------------------------CH-HHHHHHHhCCCEEEEECC
Confidence 4577778999999999999999999998842211 11 123456778888887654
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 152 g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
++ .|. ....+..++.|..|+-|-.+.....+.+....+++++.
T Consensus 123 ~~-~~a~~~a~~~a~~~g~~~v~p~~~~~~i~G~gtia~EI~eq~ 166 (403)
T PRK08526 123 NY-DEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTIALEMLDEI 166 (403)
T ss_pred CH-HHHHHHHHHHHHhcCCEeeCCCCCHHHHhhhHHHHHHHHHhc
Confidence 33 222 23334556678877755433445667777788888775
No 350
>PRK06815 hypothetical protein; Provisional
Probab=68.84 E-value=41 Score=34.42 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=57.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++.+|+.+|++++++-+... + ..-+...+.+|++.+.-+.
T Consensus 69 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~-------------------------~-~~k~~~~~~~GA~V~~~~~ 122 (317)
T PRK06815 69 QGVITASSGNHGQGVALAAKLAGIPVTVYAPEQA-------------------------S-AIKLDAIRALGAEVRLYGG 122 (317)
T ss_pred ceEEEECCChHHHHHHHHHHHhCCCEEEEECCCC-------------------------C-HHHHHHHHHCCCEEEEECC
Confidence 4577888999999999999999999988742211 0 1334566778888776543
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 152 g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
.+. +. ....+..++.+..|+.|-.......+-+....+++++.
T Consensus 123 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~ 166 (317)
T PRK06815 123 DAL-NAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELVEQQ 166 (317)
T ss_pred CHH-HHHHHHHHHHHhcCCEEecCCCChhhhcchhHHHHHHHHhc
Confidence 221 11 12233444556666644222222345566666666655
No 351
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.81 E-value=19 Score=34.53 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=28.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~ 41 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE 41 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999 57899999999999999988886543
No 352
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=68.72 E-value=42 Score=33.09 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
-+||+|+|.|.++..+++.+...|+.-+.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lv 62 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLV 62 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3789999999999999999999999765543
No 353
>PRK08638 threonine dehydratase; Validated
Probab=68.70 E-value=38 Score=35.02 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=59.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+....|..+..++-+|+.+|++++++.++.. ...-++..+.+|++.+..+-
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~--------------------------~~~k~~~~~~~GA~V~~~~~ 129 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGA--------------------------PKSKVAATCGYGAEVVLHGD 129 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCC--------------------------cHHHHHHHHHcCCEEEEECc
Confidence 4688889999999999999999999988842211 11234566778888876542
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 152 g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
++ .+. ....+.+++.|..++.|-.+.....+.+....+++++.
T Consensus 130 ~~-~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~a~Ei~~q~ 173 (333)
T PRK08638 130 NF-NDTIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLEILEDL 173 (333)
T ss_pred CH-HHHHHHHHHHHHhcCCEEcCcCCCcchhccccHHHHHHHhhc
Confidence 22 222 22334445556655433212233455566666666654
No 354
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=68.66 E-value=9.4 Score=37.21 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999 4889999999999999998887544
No 355
>PRK10637 cysG siroheme synthase; Provisional
Probab=68.62 E-value=16 Score=39.65 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.++|||+|+|..|.+=++.+.+.|-++.+|..
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 48999999999999989999999999888843
No 356
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.58 E-value=12 Score=37.35 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~ 101 (537)
.-++|||.|.|.++..+++.|+.+|.+ ++++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~ 152 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAAD 152 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 457899999999999999999999998 66663
No 357
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.54 E-value=1e+02 Score=30.79 Aligned_cols=214 Identities=16% Similarity=0.160 Sum_probs=104.4
Q ss_pred EEEEEcCc-----HHHHHHHHHHHHcCCcEEEEecCCCCCCchhhc----------cCEEEEcCCCCCCCCCCCHHHHHH
Q 009316 73 KILVANRG-----EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL----------ADESVCIGEAPSSQSYLLIPNVLS 137 (537)
Q Consensus 73 ~iLI~~~g-----~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~----------ad~~~~i~~~~~~~sy~~~~~i~~ 137 (537)
-++|+|-- +.+..+++.++++|++++-.++...+.+++... .+..-..|- +-..+..+...+-.
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl-~~~te~~d~~~~~~ 106 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNL-PVVTEVMDTRDVEE 106 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCC-CEEEeeCChhhHHH
Confidence 46787732 347899999999999998888655444422110 000000000 01112233333333
Q ss_pred HHHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee---C--CCHHHHHHhcCHHHH----HHHHHHcCCCCCCCCCcCCC
Q 009316 138 AAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI---G--PNPDSIRIMGDKSTA----RETMKNAGVPTVPGSDGLLQ 208 (537)
Q Consensus 138 ~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i---G--p~~~~i~~~~dK~~~----r~~l~~~Gvpvp~~~~~~v~ 208 (537)
+. +. +|.+--+. +..+|..+.+.+.+.|.+++ | .+.+.+...-++... .-.+-..|+++.+.|....-
T Consensus 107 l~-~~-vd~~kIga-~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~v 183 (266)
T PRK13398 107 VA-DY-ADMLQIGS-RNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTL 183 (266)
T ss_pred HH-Hh-CCEEEECc-ccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHH
Confidence 32 22 55554433 45567677777777777764 2 234444443333211 11222345544433221111
Q ss_pred CHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCC
Q 009316 209 STEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG 288 (537)
Q Consensus 209 ~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G 288 (537)
+...+...-+..+.||++=|..+.|.+- .+.... .+..+.|-+.+++|..+.-.+-. .|
T Consensus 184 dl~~i~~lk~~~~~pV~~D~sHs~G~~~--------~v~~~~-----~aAva~Ga~Gl~iE~H~~pd~a~-----~D--- 242 (266)
T PRK13398 184 DLAAVAVIKELSHLPIIVDPSHATGRRE--------LVIPMA-----KAAIAAGADGLMIEVHPEPEKAL-----SD--- 242 (266)
T ss_pred HHHHHHHHHhccCCCEEEeCCCcccchh--------hHHHHH-----HHHHHcCCCEEEEeccCCccccC-----Cc---
Confidence 2223333333458898888777664332 111111 11223466678888765542111 12
Q ss_pred CEEEEeeeeeeeccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 009316 289 NVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAAS 334 (537)
Q Consensus 289 ~vv~~~~r~~s~~~~~~k~~e~~P~~~l~~~~~~~l~~~a~~~~~a 334 (537)
.+. .++++..++|.+...++-++
T Consensus 243 ----------------------~~~-sl~p~~l~~l~~~i~~~~~~ 265 (266)
T PRK13398 243 ----------------------ARQ-TLNFEEMKELVDELKPMAKA 265 (266)
T ss_pred ----------------------hhh-cCCHHHHHHHHHHHHHHHhh
Confidence 122 27778888888777766544
No 358
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=68.44 E-value=50 Score=33.88 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=61.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|..+-.|..+..++-+|+.+|++++++.+.. . + ..-++..+.+|++.+..+.
T Consensus 68 ~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~--~-----------------------~-~~k~~~~~~~GA~V~~~~~ 121 (317)
T TIGR02991 68 AGVVAASTGNHGRALAYAAAEEGVRATICMSEL--V-----------------------P-QNKVDEIRRLGAEVRIVGR 121 (317)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCC--C-----------------------C-HHHHHHHHHcCCEEEEeCC
Confidence 457788899999999999999999998873211 1 1 1334556778888876553
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 152 g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
.+........+++++.|..++.|........+.|....+++++.
T Consensus 122 ~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~a~Ei~~q~ 165 (317)
T TIGR02991 122 SQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQGTLGLEVVEQM 165 (317)
T ss_pred CHHHHHHHHHHHHHhcCCEeeCCCCChHHHhhHHHHHHHHHHhC
Confidence 22111123344555667766655323334455677777777764
No 359
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=68.25 E-value=80 Score=34.08 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=79.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHc--CCcEEEEecCCCCCCchh---hccCEEEEcCCCC--------------CCCCCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHV---KLADESVCIGEAP--------------SSQSYL 130 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~--Gi~~v~v~~~~d~~~~~~---~~ad~~~~i~~~~--------------~~~sy~ 130 (537)
.|+|.|+|. |.|+...++-+++. .++++++....+...... .+--+.+++.... ..+-+.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 489999998 88877766666654 578888865443221111 1222333332110 011123
Q ss_pred CHHHHHHHHHHcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCC
Q 009316 131 LIPNVLSAAISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS 209 (537)
Q Consensus 131 ~~~~i~~~a~~~~~d~V~pg~-g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~ 209 (537)
..+.+.+++....+|.|+-.. |+..-.+. -.+-+.|..+.-.+.|++-..++=. .++++++|....| ++|
T Consensus 137 G~egl~~la~~~evDiVV~AIvG~aGL~pT--l~AIkaGK~VALANKESLV~aG~lI--~~~ak~~~~~IlP-----VDS 207 (454)
T PLN02696 137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPT--VAAIEAGKDIALANKETLIAGGPFV--LPLAKKHGVKILP-----ADS 207 (454)
T ss_pred CHHHHHHHHcCCCCCEEEEeCccccchHHH--HHHHHCCCcEEEecHHHHHhhHHHH--HHHHHHcCCeEee-----cch
Confidence 457888899888899888663 33212222 2334677777777889888877643 5567788877755 455
Q ss_pred HHHH
Q 009316 210 TEEA 213 (537)
Q Consensus 210 ~~~~ 213 (537)
+-.+
T Consensus 208 EHsA 211 (454)
T PLN02696 208 EHSA 211 (454)
T ss_pred hhHH
Confidence 5443
No 360
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=68.24 E-value=9.4 Score=35.20 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=28.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+|+|+|.|..+...++.++.+|++++.++...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 789999999999999999999999999986433
No 361
>PRK06482 short chain dehydrogenase; Provisional
Probab=68.14 E-value=20 Score=35.40 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=28.7
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|++++++...
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999 5889999999999999999888644
No 362
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=68.10 E-value=22 Score=38.31 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCEEEEEcCcHHHHHHHH-HHHHcCCcEEEEecCCCCCC---ch-hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009316 71 QEKILVANRGEIAVRVIR-TAHEMGIPCVAVYSTIDKDA---LH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~-aa~~~Gi~~v~v~~~~d~~~---~~-~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d 145 (537)
.|||.|.........+.+ .++++|++++.+.+...... .. ..+.+..+.++ ..+...+.+.+++.++|
T Consensus 317 gkrvai~~~~~~~~~~~~~ll~elGm~v~~~~~~~~~~~~~~~~l~~l~~~~~~v~-------~~~~~e~~~~i~~~~pd 389 (443)
T TIGR01862 317 GKRVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYEFAHEDDYEKTMKRMGEGTLLID-------DPNELEFEEILEKLKPD 389 (443)
T ss_pred CCeEEEECCchhHHHHHHHHHHHCCCEEEEeccccccHHHHHHHHHhCCCceEEec-------CCCHHHHHHHHHhcCCC
Confidence 588999877777778888 88999999988843321110 11 12333334343 34566777888888999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 146 ~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
.++-+. .+ ...++++|++++
T Consensus 390 llig~s---~~----~~~A~~lgip~~ 409 (443)
T TIGR01862 390 IIFSGI---KE----KFVAQKLGVPYR 409 (443)
T ss_pred EEEEcC---cc----hhhhhhcCCCeE
Confidence 988432 12 346677899887
No 363
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=68.01 E-value=23 Score=37.26 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=63.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC---CCchhhcc-CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK---DALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~---~~~~~~~a-d~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
-++|||+|.|.++..++..+.+.|+..+.+. |.|. ...++++. ++ -.+| -...+.+.+.+++.+.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~iv-D~D~ve~sNL~RQ~l~~~-~diG-------~~Ka~~~~~~l~~~np~v 111 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLI-DDDTVDVSNIHRQILFGA-SDVG-------RPKVEVAAERLKEIQPDI 111 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEE-eCCEEccccccccccCCh-hHCC-------CHHHHHHHHHHHHHCCCC
Confidence 4689999999999999999999999665544 3331 22222211 10 0111 123444555555555442
Q ss_pred EE-eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 147 LH-PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 147 V~-pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
-+ +-...+.+ ....+.++...+.+-+.+. ...+....+++.++|+|..-+
T Consensus 112 ~i~~~~~~i~~-~~~~~~~~~~DlVid~~Dn-----~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 112 RVNALRERLTA-ENAVELLNGVDLVLDGSDS-----FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred eeEEeeeecCH-HHHHHHHhCCCEEEECCCC-----HHHHHHHHHHHHHcCCCEEEE
Confidence 22 11122222 1233455555555443332 223455566788899988754
No 364
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.01 E-value=37 Score=35.72 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=27.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
.-++|||+|.|.++..++..+.+.|+.-+.+.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lv 165 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIV 165 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 34789999999999999999999999755443
No 365
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.00 E-value=35 Score=36.70 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=54.3
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch--hhccC--EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~--~~~ad--~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
||+|+|.|..+...++.+.+.|++|.+.+......... ..+.+ -.+..+. ..+.+.+.... .++|.|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~------~~~~~~~~~~~--~~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGK------PLELESFQPWL--DQPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECC------ccchhhhhHHh--hcCCEEE
Confidence 69999999999999999999999988875333221111 11222 1222221 11222222222 3578888
Q ss_pred eCCCcccccHHHHHHHHHCCCceeC
Q 009316 149 PGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl~~iG 173 (537)
-..|.--.++.+ ..+++.|+++++
T Consensus 74 ~s~gi~~~~~~~-~~a~~~~i~v~~ 97 (459)
T PRK02705 74 VSPGIPWDHPTL-VELRERGIEVIG 97 (459)
T ss_pred ECCCCCCCCHHH-HHHHHcCCcEEE
Confidence 766654445544 445678999884
No 366
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.95 E-value=42 Score=32.41 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIP 96 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~ 96 (537)
|+||+|+.+|+.+.|++..+...|+.
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~f~ 26 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKGFK 26 (224)
T ss_pred CcEEEEEeeccchHHHHHhHhhhccc
Confidence 57899999999999999998877643
No 367
>PRK12827 short chain dehydrogenase; Provisional
Probab=67.93 E-value=44 Score=31.97 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=28.4
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEec
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
+.+++||.| .|.++..+++.+.+.|++++++..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 347899999 588999999999999999988753
No 368
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=67.84 E-value=23 Score=38.52 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCchhhc----cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHVKL----ADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~-~~Gi~~v~v~~~~d~~~~~~~~----ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~ 144 (537)
..||+.|.+.+.....+++.+. ++|.+++++.+..........+ .+..+.++ ..+.-.+.+.+++.++
T Consensus 326 ~GkrvaI~~~~~~~~~~~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~i~i~-------d~~~~e~~~~~~~~~p 398 (461)
T TIGR01860 326 QGKKMCIWTGGPRLWHWTKALEDDLGMQVVAMSSKFGHQEDFEKVIARGKEGTIYID-------DGNELEFFEVLDLIKP 398 (461)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEEe-------CCCHHHHHHHHHhcCC
Confidence 3589999988888888889998 7999998875432111111111 12223232 1232335556677889
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 145 d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
|.++.+. . | ...+.++|++++
T Consensus 399 Dliig~s-~--~----~~~A~klgiP~v 419 (461)
T TIGR01860 399 DVIFTGP-R--V----GELVKKLHIPYV 419 (461)
T ss_pred CEEEeCC-c--c----hhhHhhcCCCEE
Confidence 9888542 1 2 235667888886
No 369
>PRK06128 oxidoreductase; Provisional
Probab=67.83 E-value=21 Score=35.94 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=29.4
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
...|++||.|. +.++..+++.+.+.|+++++++..
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 34589999994 789999999999999999887643
No 370
>PRK07102 short chain dehydrogenase; Provisional
Probab=67.76 E-value=18 Score=34.92 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=29.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
||+++|.| .|.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999 58899999999999999998886544
No 371
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=67.67 E-value=19 Score=42.63 Aligned_cols=88 Identities=9% Similarity=0.110 Sum_probs=59.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhc----cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL----ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~----ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.....+++.++++|.+++.+.+..........+ .+....+ +-.|...+.+.+++.++|.
T Consensus 320 GKrv~i~~g~~~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~~~~~vi-------~~~d~~el~~~i~~~~pDL 392 (917)
T PRK14477 320 GKRVVLFTGGVKTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALMHKDAHII-------EDTSTAGLLRVMREKMPDL 392 (917)
T ss_pred CCEEEEECCCchHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcCCCCEEE-------ECCCHHHHHHHHHhcCCCE
Confidence 5899999988888999999999999998875432211111111 1121212 2357888999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
++.+. .-...+++.|++++
T Consensus 393 lig~~-------~~~~~a~k~giP~~ 411 (917)
T PRK14477 393 IVAGG-------KTKFLALKTRTPFL 411 (917)
T ss_pred EEecC-------chhhHHHHcCCCeE
Confidence 99642 12345667899887
No 372
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=67.64 E-value=26 Score=32.50 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=26.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
+++|.|.|..+..+++.+++.|++++.+-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfi 29 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFL 29 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEE
Confidence 48999999999999999999999999765
No 373
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=67.63 E-value=10 Score=38.37 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.++++|+|.|.++..+++.++.+|.+++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeC
Confidence 47999999999999999999999998777643
No 374
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.62 E-value=31 Score=33.41 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|.|++||.| .|.++..+++.+.+.|++++++...
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 347899999 5889999999999999999888643
No 375
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=67.56 E-value=71 Score=31.64 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHH
Q 009316 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFV 161 (537)
Q Consensus 82 ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~~~~a 161 (537)
+...++++|+++|+..+-+..... ...-.|..+. ..+.++.++.+.+.+..-|+-..|.- +.+.|.
T Consensus 81 is~na~~a~~~~~ipylR~eRp~~----~~~~~~~~~~---------v~~~~eA~~~l~~~~~~~iflttGsk-~L~~f~ 146 (249)
T PF02571_consen 81 ISQNAIEACRELGIPYLRFERPSW----QPEPDDNWHY---------VDSYEEAAELLKELGGGRIFLTTGSK-NLPPFV 146 (249)
T ss_pred HHHHHHHHHhhcCcceEEEEcCCc----ccCCCCeEEE---------eCCHHHHHHHHhhcCCCCEEEeCchh-hHHHHh
Confidence 466788999999999887743222 1111344444 35788888888777666777666641 223443
Q ss_pred HHHHHCCCce---eCCCHHHHHH-----------hcCHHHHHHHHHHcCCCCCCCCC-cCCCCHHHHHHHHHhcCCcE-E
Q 009316 162 EMCREHGINF---IGPNPDSIRI-----------MGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLADELGFPV-M 225 (537)
Q Consensus 162 ~~~e~~Gl~~---iGp~~~~i~~-----------~~dK~~~r~~l~~~Gvpvp~~~~-~~v~~~~~~~~~~~~ig~Pv-v 225 (537)
. ....+..+ +-|+++.-.- =-++..-+.++++.++.+.=+-. +.. ..++=.+++.+.|.|+ |
T Consensus 147 ~-~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~viv 224 (249)
T PF02571_consen 147 P-APLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGS-GFDEKIEAARELGIPVIV 224 (249)
T ss_pred h-cccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEE
Confidence 3 11111111 2244444100 12466778888999888643211 122 3445566788899995 5
Q ss_pred EeecCCCCCcceEEeCCHHHHHHHHH
Q 009316 226 IKATAGGGGRGMRLAKEPDEFVKLLQ 251 (537)
Q Consensus 226 vKp~~g~gg~Gv~~v~~~~el~~~~~ 251 (537)
||-..--. +...+++.+++.++++
T Consensus 225 I~RP~~~~--~~~~~~~~~e~l~~l~ 248 (249)
T PF02571_consen 225 IKRPPEPY--GDPVVETIEELLDWLE 248 (249)
T ss_pred EeCCCCCC--CCcccCCHHHHHHHHh
Confidence 55443332 3334889999888765
No 376
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=67.49 E-value=45 Score=36.60 Aligned_cols=98 Identities=22% Similarity=0.361 Sum_probs=58.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++-+|+++|++++++-+... + ..-++..+.+|++.+.-+-
T Consensus 66 ~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~t--p------------------------~~Kv~~~r~~GA~Vvl~g~ 119 (499)
T TIGR01124 66 RGVIAASAGNHAQGVAFSAARLGLKALIVMPETT--P------------------------DIKVDAVRGFGGEVVLHGA 119 (499)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC--C------------------------HHHHHHHHhCCCEEEEeCc
Confidence 4588888999999999999999999988843211 1 1123455566776665442
Q ss_pred CcccccH-HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAENA-VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~~-~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+ .+.. ...+..++.|..|+-|-.+.....+.+....+++++.+
T Consensus 120 ~~-d~a~~~a~~la~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~ 164 (499)
T TIGR01124 120 NF-DDAKAKAIELSQEKGLTFIHPFDDPLVIAGQGTLALEILRQVA 164 (499)
T ss_pred CH-HHHHHHHHHHHHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCC
Confidence 22 1222 22233445566665443333444555666777777654
No 377
>PRK06940 short chain dehydrogenase; Provisional
Probab=67.43 E-value=28 Score=34.58 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|.|.+||.|.+.|+..+++.+. .|+++++++.+
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYN 33 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCC
Confidence 4577899999999999999996 79999988654
No 378
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=67.42 E-value=9.8 Score=39.26 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=71.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH-cCCcEEEEecCCCCCCch-hhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-------
Q 009316 71 QEKILVANRGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS------- 141 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~-~Gi~~v~v~~~~d~~~~~-~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~------- 141 (537)
.=||-++|.|+.+..++..... -|++++++. |.+-.. .+..|++. .+. ...-.-.+.....++.+.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvais---d~~~~~ak~A~~~ag-~~~-~~~~e~~~~s~~a~Ai~aGKi~vT~ 91 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAIS---DRNLDAAKRAYDRAG-GPK-IEAVEADDASKMADAIEAGKIAVTD 91 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEe---cccchHHHHHHHHhc-CCc-ccccccchhhHHHHHHhcCcEEEec
Confidence 3579999999999988866555 499999985 222211 22222222 110 000011223333333332
Q ss_pred --------cCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHH
Q 009316 142 --------RGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (537)
Q Consensus 142 --------~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~ 213 (537)
-.+|+|+-..|.----+.++-..-.+|-.++--+.|+--.. --.+++.+.++|+-..-+.--...+.-++
T Consensus 92 D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtI--Gp~Lk~~Ad~~GviyS~~~GDeP~~~mEL 169 (438)
T COG4091 92 DAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTI--GPILKQQADAAGVIYSGGAGDEPSSCMEL 169 (438)
T ss_pred chhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceee--cHHHHHHHhhcCeEEeccCCCCcHHHHHH
Confidence 22455553333210011111111122222211122111111 12577888889986543321222345688
Q ss_pred HHHHHhcCCcEEE
Q 009316 214 VKLADELGFPVMI 226 (537)
Q Consensus 214 ~~~~~~ig~Pvvv 226 (537)
.+|++.+||++|.
T Consensus 170 ~efa~a~G~evv~ 182 (438)
T COG4091 170 YEFASALGFEVVS 182 (438)
T ss_pred HHHHHhcCCeEEe
Confidence 9999999999885
No 379
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=67.40 E-value=1.9e+02 Score=33.66 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCeEEEEE
Q 009316 315 ALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEM 358 (537)
Q Consensus 315 ~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-~g~~~~lEi 358 (537)
.|+++...++.+.+.++-+.+|. +-.|||.++. +|++|++..
T Consensus 286 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWa~~~~~g~l~iLQa 328 (782)
T TIGR01418 286 SLSDEEILELAKLAVLIEKHYGR--PMDIEWAKDGFDGEIFIVQA 328 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCeEEEEEe
Confidence 48899999999999999999885 7889999984 788999985
No 380
>PRK08263 short chain dehydrogenase; Provisional
Probab=67.38 E-value=12 Score=36.96 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=28.8
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|.|+|||.| .|.++..+++.+.+.|++++++..+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 457899999 5889999999999999998888644
No 381
>PRK08703 short chain dehydrogenase; Provisional
Probab=67.34 E-value=12 Score=36.06 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+++||.|. |.++..+++.+.+.|++++++..+.
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 478999994 7899999999999999988886544
No 382
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=67.32 E-value=68 Score=30.45 Aligned_cols=31 Identities=16% Similarity=0.404 Sum_probs=27.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
-.+|+|+|.|.++..+++.+-..|+.-+.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lv 49 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIV 49 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3689999999999999999999999966544
No 383
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=67.29 E-value=72 Score=30.58 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=72.8
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEecCCCC-CCchhhccCEE---EEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcc
Q 009316 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDK-DALHVKLADES---VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFL 154 (537)
Q Consensus 79 ~g~ia~~ii~aa~~~Gi~~v~v~~~~d~-~~~~~~~ad~~---~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~l 154 (537)
..+-+..+++++.+-|++++=+.-+... ...-..+++++ +.+|- ...++.+.+ +.+.+.|+|.+|.+.
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGa----GTV~~~~~~-~~a~~aGA~fivsp~--- 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGA----GTVLSPEQV-DRLADAGGRLIVTPN--- 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeE----EecCCHHHH-HHHHHcCCCEEECCC---
Confidence 3556889999999999999877532221 11111222211 22331 234555555 666778999999654
Q ss_pred cccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcC--CcEE
Q 009316 155 AENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG--FPVM 225 (537)
Q Consensus 155 sE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig--~Pvv 225 (537)
.+.++.+.+...|+.++ |+ +.+.....+ +.+.|......+....-..+.+.++...++ .|++
T Consensus 92 -~~~~v~~~~~~~~~~~~-~G------~~t~~E~~~-A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvv 155 (206)
T PRK09140 92 -TDPEVIRRAVALGMVVM-PG------VATPTEAFA-ALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVF 155 (206)
T ss_pred -CCHHHHHHHHHCCCcEE-cc------cCCHHHHHH-HHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEE
Confidence 56678888888888754 54 333333332 445666655432222234566665555542 5554
No 384
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=67.26 E-value=24 Score=34.00 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=27.8
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
|+|++||.|. +.++..+++.+.+.|+++++++
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINY 33 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5789999994 7799999999999999988765
No 385
>PRK07856 short chain dehydrogenase; Provisional
Probab=67.18 E-value=38 Score=32.82 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 47899999 47899999999999999999886544
No 386
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=67.13 E-value=47 Score=35.08 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=92.9
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHc--CCcEEEEecCCCCCC---chhhccCEEEEcCCCC------------CCCCCCCH
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEM--GIPCVAVYSTIDKDA---LHVKLADESVCIGEAP------------SSQSYLLI 132 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~--Gi~~v~v~~~~d~~~---~~~~~ad~~~~i~~~~------------~~~sy~~~ 132 (537)
||+|.|+| -|.|+...++.+++. .++++++..+.+... ....+.-+.+++.... ..+-+.-.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 48899999 688988888887765 688888864433211 1112222334442110 00012246
Q ss_pred HHHHHHHHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHH
Q 009316 133 PNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE 211 (537)
Q Consensus 133 ~~i~~~a~~~~~d~V~pg-~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~ 211 (537)
+.+.+++....+|.|+-. .|+....+ .-.+-+.|-++.-.+.+++-..++-. .+.++++|....| ++|.-
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~p--tl~Ai~aGK~VaLANKEslV~aG~~i--~~~a~~~g~~i~P-----VDSEh 151 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLP--TLAAIRAGKRIALANKESLVCAGELV--MDAAKKSGAQILP-----VDSEH 151 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHH--HHHHHHCCCcEEEeCHHHHHhhHHHH--HHHHHHcCCeEEE-----ECHHH
Confidence 678888887789988765 34433323 23344778887777888888666543 5567788877654 34443
Q ss_pred HH-HHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHH
Q 009316 212 EA-VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 248 (537)
Q Consensus 212 ~~-~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~ 248 (537)
.+ .+..+.-...- ++-..-++|-|-++=.+.++|..
T Consensus 152 ~ai~q~l~~~~~~~-i~~iilTASGGpFr~~~~~~l~~ 188 (385)
T PRK05447 152 SAIFQCLPGEKQEG-VEKIILTASGGPFRDWPLEELAN 188 (385)
T ss_pred HHHHHHhcCCCccc-cceEEEecCCCcccCCCHHHHhc
Confidence 33 33332210001 12222234445555566666654
No 387
>PRK07024 short chain dehydrogenase; Provisional
Probab=67.12 E-value=22 Score=34.72 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=29.5
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
|.+++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~ 36 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRT 36 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 58899999999999999988886543
No 388
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=67.08 E-value=14 Score=36.03 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=29.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 37899999 48899999999999999999886443
No 389
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=67.02 E-value=19 Score=36.75 Aligned_cols=34 Identities=3% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
+.|++||.|. |.|+..+++.+.+.|++++++..+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 4578999995 789999999999999998888543
No 390
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=66.85 E-value=30 Score=34.70 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v 100 (537)
-++|+|+|.|..+..+++++-+.|+.-+.+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itL 59 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITL 59 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEE
Confidence 468999999999999999999999765544
No 391
>PRK05868 hypothetical protein; Validated
Probab=66.83 E-value=9.2 Score=40.08 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=29.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|++|+|+|.|..+.-++.++++.|+++.++...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERH 33 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Confidence 578999999999999999999999999998543
No 392
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.75 E-value=45 Score=35.81 Aligned_cols=93 Identities=17% Similarity=0.277 Sum_probs=57.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhcc---CE-EEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA---DE-SVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~a---d~-~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.++|+|+|.|.++..+++.+.+.|+++++.+....... ..++- .. .+..+ .. + +.+ ..++|.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~-~~~l~~~~~gi~~~~g------~~-~-~~~-----~~~~d~ 70 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPER-VAQIGKMFDGLVFYTG------RL-K-DAL-----DNGFDI 70 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchh-HHHHhhccCCcEEEeC------CC-C-HHH-----HhCCCE
Confidence 47899999999999999999999999888754332211 11111 11 11111 11 1 111 136899
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i 179 (537)
|+-..|....++.+.. +.+.|+++++ ..+.+
T Consensus 71 vv~spgi~~~~p~~~~-a~~~~i~v~~-~~~~~ 101 (445)
T PRK04308 71 LALSPGISERQPDIEA-FKQNGGRVLG-DIELL 101 (445)
T ss_pred EEECCCCCCCCHHHHH-HHHcCCcEEE-hHHHH
Confidence 9888777656665544 4678999884 44443
No 393
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=66.71 E-value=8 Score=35.63 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=25.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
-|+++|+|-|..+..+++++|.+|.+|+++..
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~ 54 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEI 54 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-S
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEEC
Confidence 48899999999999999999999999988843
No 394
>PRK07814 short chain dehydrogenase; Provisional
Probab=66.68 E-value=17 Score=35.62 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=28.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+++||.|. |.++..+++.+.+.|+++++++.+.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999995 6799999999999999998886543
No 395
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.63 E-value=16 Score=40.09 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.+.++|.|+|+|-.+...+|.+.+.|++|+++..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEA 46 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEA 46 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEec
Confidence 3467999999999999999999999999988854
No 396
>PRK08328 hypothetical protein; Provisional
Probab=66.35 E-value=29 Score=33.88 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
-++|+|+|.|..+..++..+.++|+.-+.+. |.|.-..+ .+..+.+... .....+...+...+.+++.+.+..+-.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lv-D~D~ve~s-NL~Rq~l~~~--~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLI-DEQTPELS-NLNRQILHWE--EDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEE-cCCccChh-hhccccccCh--hhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 3689999999999999999999999876554 44432211 1111111100 000001112222333445555543322
Q ss_pred -CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 009316 151 -YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 151 -~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~ 202 (537)
.+.+++. ...+.++..-+.+-.-... .-+....+++.++|+|...+
T Consensus 103 ~~~~~~~~-~~~~~l~~~D~Vid~~d~~-----~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 103 FVGRLSEE-NIDEVLKGVDVIVDCLDNF-----ETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred EeccCCHH-HHHHHHhcCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEEE
Confidence 2223222 2334555555544332221 12445566788999998765
No 397
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=66.34 E-value=26 Score=35.10 Aligned_cols=73 Identities=18% Similarity=0.024 Sum_probs=46.2
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhh-cc---C-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LA---D-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 73 ~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~-~a---d-~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
||||.| .|.++..+++.+.+.|++++++............ .. . +.+. -+..+.+.+.++.+..++|.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVE-------GDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEE-------CCCCCHHHHHHHHHhCCCcE
Confidence 588888 5999999999999999998877421111110001 00 0 1121 24567777777777678998
Q ss_pred EEeCCC
Q 009316 147 LHPGYG 152 (537)
Q Consensus 147 V~pg~g 152 (537)
|+-.-|
T Consensus 74 vv~~ag 79 (328)
T TIGR01179 74 VIHFAG 79 (328)
T ss_pred EEECcc
Confidence 875544
No 398
>PRK07063 short chain dehydrogenase; Provisional
Probab=66.33 E-value=20 Score=34.97 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=28.9
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999 47899999999999999998886543
No 399
>PRK06198 short chain dehydrogenase; Provisional
Probab=66.28 E-value=23 Score=34.41 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCc-EEEEecC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIP-CVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~-~v~v~~~ 103 (537)
..|++||.|. |.++..+++.+.+.|.+ +++++.+
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 3578999994 78999999999999999 7777543
No 400
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=66.27 E-value=24 Score=37.56 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=51.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCc---hhh-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~---~~~-~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+..+..+++.+.++|++++.+.+....... ... +.+....+ +-.|...+.+.+++.++|.
T Consensus 274 Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~-------~~~d~~~l~~~i~~~~pDl 346 (407)
T TIGR01279 274 GKKIFFFGDNLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIV-------EQPDFHRQLQRIRATRPDL 346 (407)
T ss_pred CCEEEEECCchHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEE-------eCCCHHHHHHHHHhcCCCE
Confidence 589999999999999999999999999987653321111 111 11211111 2357888889999999999
Q ss_pred EEeCC
Q 009316 147 LHPGY 151 (537)
Q Consensus 147 V~pg~ 151 (537)
++.+.
T Consensus 347 lig~~ 351 (407)
T TIGR01279 347 VVTGL 351 (407)
T ss_pred EecCc
Confidence 99654
No 401
>PRK10262 thioredoxin reductase; Provisional
Probab=66.18 E-value=17 Score=36.98 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 67 ~~~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
++..-++|+|+|.|.-+...+..+.+.|++++++.
T Consensus 2 ~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie 36 (321)
T PRK10262 2 GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLIT 36 (321)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE
Confidence 34445789999999999999999999999988885
No 402
>PRK06349 homoserine dehydrogenase; Provisional
Probab=66.16 E-value=55 Score=35.13 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHc----------CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009316 72 EKILVANRGEIAVRVIRTAHEM----------GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~----------Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~ 141 (537)
-+|.|+|-|.++..+++.+++. +++++.|.. .+... ... .+ . ....-+.|.+.++ ..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~-~~~~~-~~~-~~----~---~~~~~~~d~~~ll---~d 70 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAV-RDLEK-DRG-VD----L---PGILLTTDPEELV---ND 70 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEe-CChhh-ccC-CC----C---cccceeCCHHHHh---hC
Confidence 5799999999998887776443 456666642 22111 000 11 0 0011244555554 45
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCC
Q 009316 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 142 ~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpv 199 (537)
..+|+|+-..|-..-..++...+-+.|..++-.++.... .+=..+.++++++|+..
T Consensus 71 ~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a--~~~~eL~~lA~~~gv~l 126 (426)
T PRK06349 71 PDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLA--VHGAELFAAAEEKGVDL 126 (426)
T ss_pred CCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHH--HHHHHHHHHHHHcCCcE
Confidence 578998844332112245666777889998866664432 23355667788888764
No 403
>PRK07478 short chain dehydrogenase; Provisional
Probab=66.12 E-value=20 Score=34.79 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=28.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.|. +.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~ 40 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ 40 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999994 7799999999999999998886543
No 404
>PRK08226 short chain dehydrogenase; Provisional
Probab=66.08 E-value=12 Score=36.58 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=29.0
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
..+++||.| .+.++..+++.+.+.|+++++++..
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 357899999 5789999999999999998888543
No 405
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=66.05 E-value=27 Score=37.37 Aligned_cols=83 Identities=20% Similarity=0.204 Sum_probs=50.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.+|+.|.+.+..+..+.+.+.++|++++++.+..+... ...+.+..+.+ .|...+.+.++ ++|.++.+
T Consensus 300 gkrvai~~~~~~~~~l~~~L~ElG~~~~~~~~~~~~~~-~~~~~~~~~~~---------~D~~~~e~~~~--~~dllig~ 367 (417)
T cd01966 300 GKRVAIALEPDLLAALSSFLAEMGAEIVAAVATTDSPA-LEKLPAEEVVV---------GDLEDLEDLAA--EADLLVTN 367 (417)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHCCCEEEEEEECCCCHH-HHhCcccceEe---------CCHHHHHHhcc--cCCEEEEc
Confidence 48899999888999999999999999987765433222 22222222222 34445554443 27777743
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009316 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
. .-...++++|++++
T Consensus 368 s-------~~~~~A~~~~ip~~ 382 (417)
T cd01966 368 S-------HGRQAAERLGIPLL 382 (417)
T ss_pred c-------hhHHHHHhcCCCEE
Confidence 1 12234556677664
No 406
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=66.03 E-value=99 Score=31.28 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=80.3
Q ss_pred CCEEEEEcCcH----HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~----ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.-+|||+++.. -.+-...++.+.|-..|.+.+..+....-.....+.+... +.+.....+.....++|+
T Consensus 32 ~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~~-------~~~~~~~~~~~~~~~~~a 104 (284)
T COG0063 32 YGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPELMVIE-------VEGKKLLEERELVERADA 104 (284)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcceeEee-------cccchhhHHhhhhccCCE
Confidence 45799888652 2445567888888888877766654434444445555432 444334443344467888
Q ss_pred EEeCCCccccc--HHHHHHHHHCC-CceeCCCHHHHHHhc---------------CHHHHHHHHHHcCCCCCCCCCcCCC
Q 009316 147 LHPGYGFLAEN--AVFVEMCREHG-INFIGPNPDSIRIMG---------------DKSTARETMKNAGVPTVPGSDGLLQ 208 (537)
Q Consensus 147 V~pg~g~lsE~--~~~a~~~e~~G-l~~iGp~~~~i~~~~---------------dK~~~r~~l~~~Gvpvp~~~~~~v~ 208 (537)
|.-|.|.--+. ..+.+.+.... .+.+ =+.+.+..+. ++.++++++ |..+++. ..+
T Consensus 105 vviGpGlG~~~~~~~~~~~~l~~~~~p~V-iDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~---g~~~~~~---~~~ 177 (284)
T COG0063 105 VVIGPGLGRDAEGQEALKELLSSDLKPLV-LDADALNLLAELPDLLDERKVVLTPHPGEFARLL---GTEVDEI---EVD 177 (284)
T ss_pred EEECCCCCCCHHHHHHHHHHHhccCCCEE-EeCcHHHHHHhCcccccCCcEEECCCHHHHHHhc---CCccccc---ccc
Confidence 87775543232 23444443333 3443 2556655322 333344433 3233332 234
Q ss_pred CHHHHHHHHHhcCCcEEEe
Q 009316 209 STEEAVKLADELGFPVMIK 227 (537)
Q Consensus 209 ~~~~~~~~~~~ig~PvvvK 227 (537)
..+.+.+++++++-=+|+|
T Consensus 178 r~~~a~~~a~~~~~vvVLK 196 (284)
T COG0063 178 RLEAARELAAKYGAVVVLK 196 (284)
T ss_pred hHHHHHHHHHHcCCEEEEe
Confidence 5677888999999889999
No 407
>PRK06487 glycerate dehydrogenase; Provisional
Probab=65.92 E-value=23 Score=36.33 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
-.-|+|.|+|-|.|+..+++.++.+|.+++.++
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~ 178 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ 178 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 346899999999999999999999999988764
No 408
>PLN02970 serine racemase
Probab=65.90 E-value=50 Score=34.01 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=56.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++-+|+.+|++++++-++. .+ ..-++..+.+|++.++..-
T Consensus 76 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~--~~------------------------~~k~~~~~~~GA~Vi~~~~ 129 (328)
T PLN02970 76 KGVVTHSSGNHAAALALAAKLRGIPAYIVVPKN--AP------------------------ACKVDAVIRYGGIITWCEP 129 (328)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCEEEEECCC--CC------------------------HHHHHHHHhcCCEEEEeCC
Confidence 568888899999999999999999998884321 10 1223346677888776443
Q ss_pred CcccccHHHH-HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 152 GFLAENAVFV-EMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 152 g~lsE~~~~a-~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
.+. +...++ ++.++.|..++.|-.......+.|....+++++.
T Consensus 130 ~~~-~~~~~a~~la~~~g~~~~~~~~n~~~~~g~~t~g~Ei~~ql 173 (328)
T PLN02970 130 TVE-SREAVAARVQQETGAVLIHPYNDGRVISGQGTIALEFLEQV 173 (328)
T ss_pred CHH-HHHHHHHHHHHhcCCEEeCCCCCcchhhehHHHHHHHHHhc
Confidence 221 111222 2333445555433211222334555666666654
No 409
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=65.82 E-value=12 Score=40.73 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=58.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC---CCch-hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK---DALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~---~~~~-~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.-+..++..++++|++++++.+.-.. .... ..+.+..+.++ -.|..++.+++++.++|.
T Consensus 335 GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~el~~~i~~~~pDl 407 (466)
T TIGR01282 335 GKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYD-------DVTHYEFEEFVEKLKPDL 407 (466)
T ss_pred CCEEEEECCCCcHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEee-------CCCHHHHHHHHHHhCCCE
Confidence 588999988777888888999999999977542111 1111 12233334332 357778889999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCce
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINF 171 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~ 171 (537)
++.+.- + ....+++|+++
T Consensus 408 ~ig~~~---~----~~~a~k~gIP~ 425 (466)
T TIGR01282 408 VGSGIK---E----KYVFQKMGVPF 425 (466)
T ss_pred EEecCC---c----cceeeecCCCc
Confidence 996531 2 23456778876
No 410
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=65.64 E-value=8.4 Score=40.08 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=30.1
Q ss_pred EEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHH---HhcCCCcEEEEecccC
Q 009316 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAA---AAFGNDGVYLEKYVQN 274 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~---~~~g~~~vlvEe~I~g 274 (537)
|+||+..|+-|.||..|++.+|+...=.+.+..-. ....-.+++|||=|.-
T Consensus 263 V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T 316 (404)
T PF08886_consen 263 VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYT 316 (404)
T ss_dssp EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE----
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcch
Confidence 89999999999999999999998655444332211 1111358999997664
No 411
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=65.59 E-value=11 Score=40.30 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=31.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
|+++|+|+|+|..++..+.++.+.|++|.++...+.
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 467899999999999999999999999999964443
No 412
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=65.58 E-value=24 Score=35.75 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.++|||.| .|-++..+++.+.+.|++++++..+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 37899999 5999999999999999998876543
No 413
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.52 E-value=44 Score=35.78 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch-hhccC--EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~-~~~ad--~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.++++|.|.|.++..+++.+.+.|++|++.+......... ..+.+ -.+..+ . +...+. ..++|.|
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~-------~-~~~~~~----~~~~d~v 72 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICG-------S-HPLELL----DEDFDLM 72 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeC-------C-CCHHHh----cCcCCEE
Confidence 4789999999999999999999999988875433222111 11211 112221 1 111121 1248888
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009316 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 148 ~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~ 178 (537)
+-..|....++ ..+.+.+.|+++++ ..+.
T Consensus 73 V~s~gi~~~~~-~~~~a~~~~i~v~~-~~el 101 (447)
T PRK02472 73 VKNPGIPYTNP-MVEKALEKGIPIIT-EVEL 101 (447)
T ss_pred EECCCCCCCCH-HHHHHHHCCCcEEe-HHHH
Confidence 87776554454 44555778999884 3443
No 414
>PRK07890 short chain dehydrogenase; Provisional
Probab=65.51 E-value=15 Score=35.64 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.|. +.++..+++.+.+.|+++++++...
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 378999995 7899999999999999998886443
No 415
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.50 E-value=14 Score=36.88 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=48.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
-.+|||.+.|.++..+++.|+.+|++ ++++.+..+.......+ ++..+. .......+.+.++....++|.++
T Consensus 130 ~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~l~~~~~~~~vd~vl 203 (312)
T cd08269 130 GKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVT------DDSEAIVERVRELTGGAGADVVI 203 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEec------CCCcCHHHHHHHHcCCCCCCEEE
Confidence 46899999889999999999999999 77665433222211111 122221 11223345566655556799999
Q ss_pred eCCCc
Q 009316 149 PGYGF 153 (537)
Q Consensus 149 pg~g~ 153 (537)
...|.
T Consensus 204 d~~g~ 208 (312)
T cd08269 204 EAVGH 208 (312)
T ss_pred ECCCC
Confidence 87653
No 416
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=65.49 E-value=23 Score=36.36 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.++|.|+|-|.|+..+++.++.+|++++++..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~ 167 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSR 167 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 58999999999999999999999999988743
No 417
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=65.37 E-value=24 Score=34.48 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.|. +.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999995 7799999999999999998886443
No 418
>PRK06172 short chain dehydrogenase; Provisional
Probab=65.28 E-value=25 Score=34.07 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=29.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|.+++++..+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 41 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDA 41 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 37899999 47899999999999999998886544
No 419
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.22 E-value=31 Score=36.02 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
.++|||+|.|.++..++..+-..|+.-+.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lv 58 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITII 58 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4789999999999999999999999877654
No 420
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=65.20 E-value=26 Score=34.15 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=28.9
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|.|++||.|. +.++..+++.+.+.|+++++++.+
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3578999995 789999999999999999888644
No 421
>PRK08813 threonine dehydratase; Provisional
Probab=65.15 E-value=41 Score=35.10 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=61.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009316 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 73 ~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g 152 (537)
.|+.+..|..+..++.+|+.+|++++++-+.. ....-++..+.+|++.+.-+-.
T Consensus 83 ~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~--------------------------~~~~K~~~i~~~GAeVv~~g~~ 136 (349)
T PRK08813 83 PVICASAGNHAQGVAWSAYRLGVQAITVMPHG--------------------------APQTKIAGVAHWGATVRQHGNS 136 (349)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--------------------------CCHHHHHHHHHcCCEEEEECCC
Confidence 47777799999999999999999998873211 1123445567788888775433
Q ss_pred cccccHH-HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHH
Q 009316 153 FLAENAV-FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKN 194 (537)
Q Consensus 153 ~lsE~~~-~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~ 194 (537)
+. |... ..++.++.|..|+.|-.+.....+.|....+++++
T Consensus 137 ~~-~a~~~a~~la~~~g~~~v~~~~np~~i~G~~Tig~EI~e~ 178 (349)
T PRK08813 137 YD-EAYAFARELADQNGYRFLSAFDDPDVIAGQGTVGIELAAH 178 (349)
T ss_pred HH-HHHHHHHHHHHhcCCEEcCccCChHHHHHHHHHHHHHHcC
Confidence 31 2222 33445566877776643444556778888888763
No 422
>PRK05875 short chain dehydrogenase; Provisional
Probab=64.97 E-value=22 Score=35.09 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.|. |.++..+++.+.+.|+++++++.+
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999995 889999999999999998888644
No 423
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=64.96 E-value=95 Score=34.98 Aligned_cols=123 Identities=14% Similarity=0.069 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcce
Q 009316 158 AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGM 237 (537)
Q Consensus 158 ~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv 237 (537)
..+..++....+.++-|.+. .++.||..+.-+-+.. |--|+ .+-...+.- ..+ .+-..|.||..|.-|.+|
T Consensus 473 ~~L~~lL~~~~~~~iEP~Wk--~llsNKaiLplLW~l~--p~Hp~--LLpayfe~d-~~l--~~~~yV~KPi~GREG~nV 543 (619)
T PRK10507 473 VRLIDVLLRPEVLVFEPLWT--VIPGNKAILPVLWSLF--PHHRY--LLDTDFTVN-DEL--VKTGYAVKPIAGRCGSNI 543 (619)
T ss_pred hHHHHhhccCceEEEcccHH--hhcccHHHHHHHHHhC--CCCcc--cccccccCC-ccc--ccCCeEeccCCCcCCCCE
Confidence 35666666677899865544 4688999888666543 11132 222222110 111 222489999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecccC----CcEEEEEEEEeCCCCEEEEeeee
Q 009316 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN----PRHIEFQVLADKYGNVVHFGERD 297 (537)
Q Consensus 238 ~~v~~~~el~~~~~~~~~~~~~~~g~~~vlvEe~I~g----~~ei~v~v~~d~~G~vv~~~~r~ 297 (537)
.++.+.....+ .....+++..++.|+|.+= ..+.-+-++.- .|+...++.|+
T Consensus 544 ~i~~~~g~~~~-------~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~v-gg~~aG~giRe 599 (619)
T PRK10507 544 DLVSHQEEVLD-------KTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTV-GGNYGGTCLRG 599 (619)
T ss_pred EEEeCCCcEee-------ccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEE-CCEEEEEEEec
Confidence 99976322211 1123467789999999874 24554444433 33666666664
No 424
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.92 E-value=14 Score=36.16 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.5
Q ss_pred CCEEEEEcCc---HHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~g---~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.|.+ .|+..+++.+.+.|+++++++.+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 4789999975 79999999999999999887543
No 425
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=64.85 E-value=24 Score=37.57 Aligned_cols=87 Identities=20% Similarity=0.373 Sum_probs=57.8
Q ss_pred HHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEE--eCCHHHHHHHHHHHHHHHHHhc-------CC
Q 009316 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAF-------GN 263 (537)
Q Consensus 193 ~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~--v~~~~el~~~~~~~~~~~~~~~-------g~ 263 (537)
++.-+|.+++ ..+..+++....+..+. -+||||+.|+||-|+.+ .-+.+|+.+..+++.....+.. ..
T Consensus 340 e~~lL~nv~T--~~c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST 416 (488)
T COG2308 340 EEPLLPNVPT--YWCGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQLST 416 (488)
T ss_pred cccccCCCCe--eecCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhChhhhcccccccccc
Confidence 3456788887 56788888887777664 58999999998888776 5678888888887776542211 12
Q ss_pred CcEEEEecccCCcEEEEEEE
Q 009316 264 DGVYLEKYVQNPRHIEFQVL 283 (537)
Q Consensus 264 ~~vlvEe~I~g~~ei~v~v~ 283 (537)
.+.+++.-+.. +|+..-++
T Consensus 417 ~Pt~v~~~l~p-r~vdlR~f 435 (488)
T COG2308 417 VPTFVDGGLAP-RHVDLRPF 435 (488)
T ss_pred cceEECCeecc-ccccceeE
Confidence 24444444443 66555444
No 426
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=64.82 E-value=27 Score=35.66 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=62.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~-Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.||.|+|.|.++...+..+.+. +++++++. +.|..+.....+.+.- + ...|.+.+.+++-..-.++|+|+-.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVv-did~es~gla~A~~~G-i-----~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMV-GIDPESDGLARARRLG-V-----ATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEE-eCChhhHHHHHHHHcC-C-----CcccCCHHHHHhCcCCCCCCEEEEC
Confidence 5799999999999877777665 67888775 3444433334444321 1 1125677777762111469998854
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHH
Q 009316 151 YGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 151 ~g~lsE~~~~a~~~e~~Gl~~iGp~~~~ 178 (537)
.+. ..+.+++..+.+.|..++-.++..
T Consensus 78 T~a-~~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSA-GAHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCH-HHHHHHHHHHHHcCCeEEECCccc
Confidence 432 123567778888898887655544
No 427
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.73 E-value=15 Score=35.34 Aligned_cols=34 Identities=6% Similarity=0.053 Sum_probs=29.0
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
-+++||.|. |.++..+++.+.+.|+++++++.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 368999996 9999999999999999988886443
No 428
>PRK06436 glycerate dehydrogenase; Provisional
Probab=64.70 E-value=35 Score=34.87 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=29.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
..|+|.|+|-|.++..+++.++.+|+++++++
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 45899999999999999999999999988874
No 429
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=64.57 E-value=51 Score=34.83 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
..|||++..|..+.|..+-+++.|.+++.+..+
T Consensus 80 gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 80 GDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 579999999999999999999999999999644
No 430
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=64.42 E-value=26 Score=36.14 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.5
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
-++|||.|. |-++..+++.+.+.|++|+++..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999994 899999999999999999987543
No 431
>PRK14031 glutamate dehydrogenase; Provisional
Probab=64.37 E-value=57 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
.-+||+|.|.|..+.+.++.+.++|.++++|.
T Consensus 227 ~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVS 258 (444)
T PRK14031 227 KGKVCLVSGSGNVAQYTAEKVLELGGKVVTMS 258 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 35899999999999999999999999999985
No 432
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=64.29 E-value=32 Score=33.48 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=28.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|++++++..+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999 4889999999999999999888654
No 433
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=64.25 E-value=64 Score=34.18 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=27.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
-.+|||+|.|.++..++..+-..|+..+.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lv 72 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIV 72 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4689999999999999999999999876654
No 434
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=64.24 E-value=8.8 Score=39.09 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=29.6
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCC--cEEEE
Q 009316 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGI--PCVAV 100 (537)
Q Consensus 66 ~~~~~~~~iLI~~~g~ia~~ii~aa~~~Gi--~~v~v 100 (537)
|+.+++++|+|+|.|.++..+++.+++.|+ +++++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~ 37 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGA 37 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEE
Confidence 456778999999999999999999999996 45544
No 435
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=64.18 E-value=36 Score=34.03 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHc---CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEM---GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~---Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
|.+||.|+|.|.++..|++.+.+- +++.+.|+.. +. .....+++. . .-+.++++++ ...+|.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~-~~~~~~~~~-~--------~~~~~l~~ll----~~~~Dl 65 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AA-DLPPALAGR-V--------ALLDGLPGLL----AWRPDL 65 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CH-HHHHHhhcc-C--------cccCCHHHHh----hcCCCE
Confidence 457999999999999999998753 4777777532 21 122233332 1 1244555552 345888
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC--CCCCCCCCcCCCCHHHHHH
Q 009316 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG--VPTVPGSDGLLQSTEEAVK 215 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G--vpvp~~~~~~v~~~~~~~~ 215 (537)
|+=+-+.. -..+++..+.+.|..++--|.-++..-.=....++.+++.| |-+|.+ .+--.|.+..
T Consensus 66 VVE~A~~~-av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSG---AigGlD~l~a 132 (267)
T PRK13301 66 VVEAAGQQ-AIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAG---AIAGLDYLQA 132 (267)
T ss_pred EEECCCHH-HHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeCh---HHHhHHHHHH
Confidence 88322110 01245555667787776455554432112233344455544 555554 3444555443
No 436
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=64.13 E-value=31 Score=35.81 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch-hhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~-~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++..+++.|+.+|.+++++....+..... .++ +|..+. +.+.+.+.+.. .++|.|
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~---------~~~~~~~~~~~--~~~D~v 251 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLV---------STDPEKMKAAI--GTMDYI 251 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEc---------CCCHHHHHhhc--CCCCEE
Confidence 45789999999999999999999999988775444332111 122 233331 12223444332 268999
Q ss_pred EeCCC
Q 009316 148 HPGYG 152 (537)
Q Consensus 148 ~pg~g 152 (537)
+-..|
T Consensus 252 id~~g 256 (360)
T PLN02586 252 IDTVS 256 (360)
T ss_pred EECCC
Confidence 97655
No 437
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=64.01 E-value=17 Score=37.05 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=47.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~p 149 (537)
-++|||.+.|..+..+++.|+.+|++++++.+..+......++ +|+.+.. .+....+.+.++....++|.++.
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~------~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINV------GDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecC------cccCHHHHHHHHhCCCCCCEEEE
Confidence 4689999888889999999999999988875433221111111 3443321 11223455666655567999998
Q ss_pred CCC
Q 009316 150 GYG 152 (537)
Q Consensus 150 g~g 152 (537)
..|
T Consensus 234 ~~g 236 (337)
T cd08261 234 ATG 236 (337)
T ss_pred CCC
Confidence 764
No 438
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=63.94 E-value=34 Score=34.34 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=25.0
Q ss_pred EEEEc-CcHHHHHHHHHHHHcCCcEEEEec
Q 009316 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 74 iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
|||.| .|-++..+++.+.+.|++++++..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEec
Confidence 78998 599999999999999998777653
No 439
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=63.86 E-value=25 Score=38.70 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=28.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.||+.|.|....+..+.+.+.++|.+++.+.+
T Consensus 363 GKrvaI~gdpd~~~~l~~fL~ElGmepv~v~~ 394 (515)
T TIGR01286 363 GKRFAIYGDPDFVMGLVRFVLELGCEPVHILC 394 (515)
T ss_pred CceEEEECCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 48999999999999999999999999876643
No 440
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=63.67 E-value=1.6e+02 Score=29.24 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH---cCCCEEEeCCCcccccH
Q 009316 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS---RGCTMLHPGYGFLAENA 158 (537)
Q Consensus 82 ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~---~~~d~V~pg~g~lsE~~ 158 (537)
+...++++|+++|+..+-+..... ...|..+.+ .+.++..+.+.+ .+ .-|+-..|.- +.+
T Consensus 80 is~~a~~a~~~~~ipylR~eR~~~------~~~~~~~~v---------~~~~ea~~~~~~~~~~~-~~i~lttG~k-~l~ 142 (256)
T TIGR00715 80 ITTNATAVCKELGIPYVRFERPPL------ALGKNIIEV---------PDIEEATRVAYQPYLRG-KRVFLTAGAS-WLS 142 (256)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCC------CCCCCeEEe---------CCHHHHHHHhhhccccC-CcEEEecCcc-hHH
Confidence 356788999999999887743221 122233333 355666666654 22 2455444431 223
Q ss_pred HHHHHHHHCCCc-eeCCCHHHHHHhcC----------------HHHHHHHHHHcCCCCCCCCC-cCCCCHHHHHHHHHhc
Q 009316 159 VFVEMCREHGIN-FIGPNPDSIRIMGD----------------KSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLADEL 220 (537)
Q Consensus 159 ~~a~~~e~~Gl~-~iGp~~~~i~~~~d----------------K~~~r~~l~~~Gvpvp~~~~-~~v~~~~~~~~~~~~i 220 (537)
.|........+. -+-|+++.+..+.+ +..-+.+++++|+.+.=+-. +..-...+=.+++.+.
T Consensus 143 ~f~~~~~~~~~~~RvLP~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~l 222 (256)
T TIGR00715 143 HFSLSQDEAVVFVRVLPYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEAL 222 (256)
T ss_pred HHhhccCCceEEEEECCCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHc
Confidence 333221111111 12255555554433 66778899999988753311 1111234445677889
Q ss_pred CCcEEE-eecCCCCCcceEEeCCHHHHHHHHHH
Q 009316 221 GFPVMI-KATAGGGGRGMRLAKEPDEFVKLLQQ 252 (537)
Q Consensus 221 g~Pvvv-Kp~~g~gg~Gv~~v~~~~el~~~~~~ 252 (537)
|.|+|+ |-..- -.+...+++.+++.+++++
T Consensus 223 gi~vivI~RP~~--~~~~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 223 GINVIRIARPQT--IPGVAIFDDISQLNQFVAR 253 (256)
T ss_pred CCcEEEEeCCCC--CCCCccCCCHHHHHHHHHH
Confidence 999644 33322 1224567899999888765
No 441
>PRK06753 hypothetical protein; Provisional
Probab=63.61 E-value=11 Score=39.07 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=29.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
++|+|+|+|..+.-.+.++++.|++++++...+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 479999999999999999999999999985443
No 442
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=63.49 E-value=0.58 Score=48.10 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred HHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCC----HHHHHHHHHHH
Q 009316 178 SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKE----PDEFVKLLQQA 253 (537)
Q Consensus 178 ~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~----~~el~~~~~~~ 253 (537)
....+.+|...+..+++.++.+|-.- ...-....++.+++-+|+|++.||..++.+.+..+... .+.+..+...+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~vvfp~lh-G~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~ 123 (317)
T COG1181 45 AGLWMLDKEVTKRVLQKADVVFPVLH-GPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVA 123 (317)
T ss_pred cceEEeccccchhhcccCCEEEEeCC-CCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceee
Confidence 33445556666678888888776642 33444556788889999999999999998888654321 22222221111
Q ss_pred HHHHHHhcCCCcEEEEecccCCcEEEEEEEEeCCCCEE
Q 009316 254 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV 291 (537)
Q Consensus 254 ~~~~~~~~g~~~vlvEe~I~g~~ei~v~v~~d~~G~vv 291 (537)
.... ...++++|++..+ ..+-+-|..+..|-.+
T Consensus 124 ~~~~----~~~~~~~e~~~~~-l~~p~~Vkp~~~gSSv 156 (317)
T COG1181 124 LTRD----EYSSVIVEEVEEG-LGFPLFVKPAREGSSV 156 (317)
T ss_pred eecc----cchhHHHHHhhcc-cCCCEEEEcCCcccee
Confidence 1100 0146778888888 7777777766555444
No 443
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=63.45 E-value=21 Score=36.30 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~G-i~~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|||.|.|.++..+++.|+.+| .+++++.+.++.......+ +|..+.. ++. ..+.+.++....++|.++
T Consensus 168 ~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~------~~~-~~~~i~~~~~~~~~dvvl 240 (340)
T cd05284 168 GSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNA------SDD-VVEEVRELTGGRGADAVI 240 (340)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcC------Ccc-HHHHHHHHhCCCCCCEEE
Confidence 478999999889999999999999 8888876544322211111 2333321 111 345555555445799999
Q ss_pred eCCCc
Q 009316 149 PGYGF 153 (537)
Q Consensus 149 pg~g~ 153 (537)
...|.
T Consensus 241 d~~g~ 245 (340)
T cd05284 241 DFVGS 245 (340)
T ss_pred EcCCC
Confidence 76653
No 444
>PRK08246 threonine dehydratase; Provisional
Probab=63.43 E-value=71 Score=32.62 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=57.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg 150 (537)
.++|+.+-.|..+..++-+|+.+|++++++-+.. . .+.-+...+..|++.++.+
T Consensus 68 ~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~--~------------------------~~~k~~~~~~~GA~V~~~~ 121 (310)
T PRK08246 68 AAGVVAASGGNAGLAVAYAAAALGVPATVFVPET--A------------------------PPAKVARLRALGAEVVVVG 121 (310)
T ss_pred CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCC--C------------------------cHHHHHHHHHCCCEEEEeC
Confidence 4678888899999999999999999999884221 1 1123446667788876644
Q ss_pred CCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 151 YGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 151 ~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
..+. +. ....+..++.|..++.|-.+-....+.+....+++++.
T Consensus 122 ~~~~-~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~t~~~Ei~eq~ 166 (310)
T PRK08246 122 AEYA-DALEAAQAFAAETGALLCHAYDQPEVLAGAGTLGLEIEEQA 166 (310)
T ss_pred CCHH-HHHHHHHHHHHhcCCEeCCCCCChhhhcchHHHHHHHHHhc
Confidence 3221 11 12223344456544433212223345566666666664
No 445
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=63.43 E-value=48 Score=31.96 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.|. +.++..+++.+.+.|+++++++.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 378999994 7899999999999999999986543
No 446
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=63.26 E-value=47 Score=32.44 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+.+
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47899999 578999999999999999998865443
No 447
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.94 E-value=31 Score=34.10 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCCEEEEEcCc---HHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~g---~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
..|.+||.|.+ .|+..+++.+.+.|+.+++++.+
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 34789999975 69999999999999998877543
No 448
>PRK09134 short chain dehydrogenase; Provisional
Probab=62.94 E-value=43 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEec
Q 009316 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 69 ~~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
.+.|++||.| .|.++..+++.+.+.|+.++++..
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3457899999 578999999999999999887653
No 449
>PRK08639 threonine dehydratase; Validated
Probab=62.82 E-value=74 Score=34.03 Aligned_cols=97 Identities=24% Similarity=0.300 Sum_probs=59.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE--Ee
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML--HP 149 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V--~p 149 (537)
+.|+.+..|..+..++-+|+.+|++++++-+.. . ...-++..+.+|++.| +.
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~--~------------------------~~~k~~~~r~~GA~vv~v~~ 127 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVT--T------------------------PQQKIDQVRFFGGEFVEIVL 127 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCC--C------------------------hHHHHHHHHHcCCCeeEEEE
Confidence 468888899999999999999999999884211 1 1122456677888743 21
Q ss_pred -CCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHc
Q 009316 150 -GYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 150 -g~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
+.++ .+. ....+.+++.|..|+.|-.+.....+.+....+++++.
T Consensus 128 ~g~~~-~~a~~~a~~~a~~~g~~~~~~~~~~~~~~G~~tig~EI~eq~ 174 (420)
T PRK08639 128 VGDTF-DDSAAAAQEYAEETGATFIPPFDDPDVIAGQGTVAVEILEQL 174 (420)
T ss_pred eCcCH-HHHHHHHHHHHHhcCCcccCCCCChhHhcchhHHHHHHHHhc
Confidence 2112 222 22334455667777655433444456666666666654
No 450
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=62.64 E-value=50 Score=36.04 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=50.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEM---GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~---Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
.++++|+|.|+.+..+++++++. |++++.+..+. ... ....+- + -+.+.+.+...+++..+|.+
T Consensus 146 ~rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~-~~~--~~i~gv-------P---Vlg~~d~l~~~~~~~~v~vI 212 (476)
T PRK15204 146 KKKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTD-ASD--AEINML-------P---VIKDTEIIWDLNRTGDVHYI 212 (476)
T ss_pred CCeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCC-ccc--cccCCC-------c---ccCCHHHHHHHHHhCCCcEE
Confidence 36899999999999999998765 89988776332 111 111111 1 13345566667777777765
Q ss_pred EeCCCccc-c-cHHHHHHHHHCCC
Q 009316 148 HPGYGFLA-E-NAVFVEMCREHGI 169 (537)
Q Consensus 148 ~pg~g~ls-E-~~~~a~~~e~~Gl 169 (537)
+.- +... + .....+.|++.|+
T Consensus 213 IAi-p~~~~~~r~~il~~l~~~gv 235 (476)
T PRK15204 213 LAY-EYTELEKTHFWLRELSKHHC 235 (476)
T ss_pred EEe-CcCcHHHHHHHHHHHhhcCC
Confidence 542 2211 1 1244556666665
No 451
>PRK06847 hypothetical protein; Provisional
Probab=62.62 E-value=14 Score=38.45 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=29.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
+++|+|+|+|..+.-.+..+++.|++++++..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 57899999999999999999999999998853
No 452
>PRK05884 short chain dehydrogenase; Provisional
Probab=62.60 E-value=19 Score=34.53 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=26.8
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 73 ~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|+||.|. +.++..+++.+.+.|++++++..+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 6888884 889999999999999999988644
No 453
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=62.59 E-value=1.3e+02 Score=29.18 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=80.3
Q ss_pred EEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE-eCCCc
Q 009316 75 LVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH-PGYGF 153 (537)
Q Consensus 75 LI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~-pg~g~ 153 (537)
+.-|+--....+.++.++ ++++.+.+.-.... +.... ...+.+.+...|+..++..+. +..+.
T Consensus 6 l~SGGKDS~~al~~a~~~--~~v~~L~t~~~~~~------~s~~~--------H~~~~~~~~~qA~algipl~~~~~~~~ 69 (223)
T TIGR00290 6 LISGGKDSCLALYHALKE--HEVISLVNIMPENE------ESYMF--------HGVNAHLTDLQAESIGIPLIKLYTEGT 69 (223)
T ss_pred EecCcHHHHHHHHHHHHh--CeeEEEEEEecCCC------Ccccc--------cccCHHHHHHHHHHcCCCeEEeecCCC
Confidence 344455566777777666 88776633221111 11110 134677777888888888653 22221
Q ss_pred -ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCC
Q 009316 154 -LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (537)
Q Consensus 154 -lsE~~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~ 232 (537)
..|...+.+.+.+.|+..+ -.-++..-..|.+..+.++++|+...-. .--.+.+++.+-.-..||-++|..++..
T Consensus 70 ~e~~~e~l~~~l~~~gv~~v--v~GdI~s~~qr~~~e~v~~~lgl~~~~P--LW~~~~~~ll~e~i~~G~~aiIv~v~a~ 145 (223)
T TIGR00290 70 EEDEVEELKGILHTLDVEAV--VFGAIYSEYQKTRIERVCRELGLKSFAP--LWHRDPEKLMEEFVEEKFEARIIAVAAE 145 (223)
T ss_pred ccHHHHHHHHHHHHcCCCEE--EECCcccHHHHHHHHHHHHhcCCEEecc--ccCCCHHHHHHHHHHcCCeEEEEEEecC
Confidence 1122566677777777533 1223444456888899999999886443 2345666665555578998887766544
No 454
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=62.50 E-value=23 Score=35.75 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=28.6
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
++|||.| .|-++..+++.+.+.|++|+++..+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 6899999 59999999999999999998775443
No 455
>PRK08309 short chain dehydrogenase; Provisional
Probab=62.46 E-value=45 Score=31.05 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=26.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
++++|.|+..+..++++.+.+.|+++++++.+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECC
Confidence 36899997667677999999999999887644
No 456
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=62.45 E-value=29 Score=33.78 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=28.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|.++++++..
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 58899999 5789999999999999999887543
No 457
>PRK06523 short chain dehydrogenase; Provisional
Probab=62.39 E-value=37 Score=32.99 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=29.2
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.|++||.|. |.++..+++.+.+.|+++++++.+.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 478999994 7899999999999999999886543
No 458
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=62.24 E-value=50 Score=36.51 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~G-i~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V 147 (537)
...+++||.|+|..|..++++.++.+ +.+|++- |+|..-....+-.-.+ |...+ +.+++++++++-|
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fi-Ddd~~~~g~~i~Gv~V----------~g~~~-i~~~v~~~~~~~i 181 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFL-DDDPDLTGMKIRGVPV----------LGRIE-IERVVEELGIQLI 181 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEE-CCChhhcCCEEeceee----------echhH-HHHHHHHcCCceE
Confidence 33578999999999999999999875 4555443 4444333333333222 34455 8888999999855
Q ss_pred EeCCCccc--ccHHHHHHHHHCCCce-eCCCHHHH
Q 009316 148 HPGYGFLA--ENAVFVEMCREHGINF-IGPNPDSI 179 (537)
Q Consensus 148 ~pg~g~ls--E~~~~a~~~e~~Gl~~-iGp~~~~i 179 (537)
+-....++ |...+.+.|.+.|+.+ .-|+.+.+
T Consensus 182 iiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l 216 (588)
T COG1086 182 LIAIPSASQEERRRILLRLARTGIAVRILPQLTDL 216 (588)
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHH
Confidence 43322222 2246677888888654 33554443
No 459
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.21 E-value=88 Score=31.29 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=62.7
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCEEEeC--------CCcc--ccc--HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHH
Q 009316 123 APSSQSYLLIPNVLSAAISRGCTMLHPG--------YGFL--AEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190 (537)
Q Consensus 123 ~~~~~sy~~~~~i~~~a~~~~~d~V~pg--------~g~l--sE~--~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~ 190 (537)
+.+.+++.-...+.+..++.++..+.-+ ++|. .+. ..+.+.+++.|++++- + ..|......
T Consensus 34 PCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t-e------~~d~~~~~~ 106 (266)
T PRK13398 34 PCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT-E------VMDTRDVEE 106 (266)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE-e------eCChhhHHH
Confidence 3554554444455555566788877655 3332 121 4577888899998862 1 223333332
Q ss_pred HHHHcCCCC--CCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHH
Q 009316 191 TMKNAGVPT--VPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKS 255 (537)
Q Consensus 191 ~l~~~Gvpv--p~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~ 255 (537)
+.+. ++. .+. ..+++.+ +.+.+.+.|.||++|-- +. -+.+|+..+.+.+..
T Consensus 107 -l~~~-vd~~kIga--~~~~n~~-LL~~~a~~gkPV~lk~G-------~~--~s~~e~~~A~e~i~~ 159 (266)
T PRK13398 107 -VADY-ADMLQIGS--RNMQNFE-LLKEVGKTKKPILLKRG-------MS--ATLEEWLYAAEYIMS 159 (266)
T ss_pred -HHHh-CCEEEECc--ccccCHH-HHHHHhcCCCcEEEeCC-------CC--CCHHHHHHHHHHHHh
Confidence 2333 332 233 3455544 44555688999999933 22 266788888776653
No 460
>PRK06270 homoserine dehydrogenase; Provisional
Probab=62.21 E-value=67 Score=33.34 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHc----------CCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEM----------GIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~----------Gi~~v~v~ 101 (537)
.-+|.|+|-|.++..+++.+++. +++++.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~ 42 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIA 42 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEE
Confidence 45899999999999888888654 56777665
No 461
>PRK08589 short chain dehydrogenase; Validated
Probab=62.03 E-value=30 Score=34.20 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=29.5
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
..|++||.|. +.++..+++.+.+.|+++++++.+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 3578999995 779999999999999999998654
No 462
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=62.00 E-value=27 Score=34.14 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
-++|||+|.|.++..+++.+-+.|+.-+.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~Lv 41 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLI 41 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 4689999999999999999999999766554
No 463
>PLN02650 dihydroflavonol-4-reductase
Probab=61.96 E-value=29 Score=35.73 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.++|||.|. |.++..+++.+.+.|++|+++..+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 468999995 899999999999999999887544
No 464
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=61.87 E-value=57 Score=33.20 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=50.0
Q ss_pred EEEEEcCcHH-----HHHHHHHHHHcCCcEEEEecCCCCCCchhhcc-CEEEEcCCCCC--CCCC----------CCHHH
Q 009316 73 KILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPS--SQSY----------LLIPN 134 (537)
Q Consensus 73 ~iLI~~~g~i-----a~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~a-d~~~~i~~~~~--~~sy----------~~~~~ 134 (537)
+|+|.+.|.- +..+++++.+.|+++.++.............- -+.+.++.... ...+ .....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQ 80 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHH
Confidence 3666665443 45788999999999998875432211111110 12222321110 0000 11234
Q ss_pred HHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 135 i~~~a~~~~~d~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
+.+++++.++|.||...++. ......++...|++++
T Consensus 81 ~~~~i~~~~pDvI~~~~~~~--~~~~~~~a~~~~~p~v 116 (350)
T cd03785 81 ARKILKKFKPDVVVGFGGYV--SGPVGLAAKLLGIPLV 116 (350)
T ss_pred HHHHHHhcCCCEEEECCCCc--chHHHHHHHHhCCCEE
Confidence 56777888999999643332 2122233455566654
No 465
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=61.85 E-value=76 Score=33.83 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=60.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE---EE
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM---LH 148 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~---V~ 148 (537)
+.|..+..|..+..++.+|+.+|++++++-+.. .+ ..-++..+.+|++. +.
T Consensus 65 ~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~--~~------------------------~~k~~~~~~~GA~vv~v~~ 118 (409)
T TIGR02079 65 KGVVCASAGNHAQGFAYACRHLGVHGTVFMPAT--TP------------------------KQKIDRVKIFGGEFIEIIL 118 (409)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCC--CC------------------------HHHHHHHHHcCCCeeEEEE
Confidence 357888899999999999999999999884221 10 12244567788863 32
Q ss_pred eCCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 149 PGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 149 pg~g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+.++. +. ....+.+++.|..++.|-.+.....+.+....+++++.+
T Consensus 119 ~g~~~~-~a~~~a~~~~~~~g~~~~~~~~~~~~~~g~~ti~~Ei~~q~~ 166 (409)
T TIGR02079 119 VGDTFD-QCAAAAREHVEDHGGTFIPPFDDPRIIEGQGTVAAEILDQLP 166 (409)
T ss_pred eCCCHH-HHHHHHHHHHHhcCCEEeCCCCCHhHhhhhHHHHHHHHHhcC
Confidence 232221 22 233445566687777554333445566777777777754
No 466
>PRK06932 glycerate dehydrogenase; Provisional
Probab=61.76 E-value=30 Score=35.44 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v 100 (537)
-..|+|.|+|-|.|+..+++.++-+|.+++.+
T Consensus 145 l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~ 176 (314)
T PRK06932 145 VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA 176 (314)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE
Confidence 34689999999999999999999999998765
No 467
>PRK06181 short chain dehydrogenase; Provisional
Probab=61.72 E-value=24 Score=34.48 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=27.9
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 72 ~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
+++||.|. |.++..+++.+.+.|++++++..+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARN 34 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67999995 889999999999999999888644
No 468
>PLN02928 oxidoreductase family protein
Probab=61.70 E-value=31 Score=35.92 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
-.-|+|+|+|-|.|+..+++.++.+|.+|+++.
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~d 189 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATR 189 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 345899999999999999999999999888764
No 469
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=61.47 E-value=1.1e+02 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.7
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEE
Q 009316 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (537)
Q Consensus 73 ~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v 100 (537)
||+|.| .|..+..++++..+.|++.+..
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEee
Confidence 688998 6999999999998899998875
No 470
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=61.35 E-value=90 Score=30.31 Aligned_cols=98 Identities=16% Similarity=0.319 Sum_probs=61.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+....|..+..++.+|+.+|++++++.+... ...-++..+..+++.+....
T Consensus 51 ~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~--------------------------~~~~~~~~~~~Ga~v~~~~~ 104 (244)
T cd00640 51 GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGA--------------------------SPEKVAQMRALGAEVVLVPG 104 (244)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC--------------------------CHHHHHHHHHCCCEEEEECC
Confidence 5677777889999999999999999998853321 12344455667777665443
Q ss_pred CcccccHHH-HHHHHH-CCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAENAVF-VEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~~~~-a~~~e~-~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+ .+...+ .+.+++ .+..++.+........+.+....+++++.+
T Consensus 105 ~~-~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~ 150 (244)
T cd00640 105 DF-DDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLG 150 (244)
T ss_pred CH-HHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 32 122223 344444 455555432455566667777777777654
No 471
>PLN02740 Alcohol dehydrogenase-like
Probab=61.13 E-value=41 Score=35.20 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC-cEEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi-~~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
..-++|||.|.|.++.-+++.|+.+|. ++++++..++......++ +|..+... ..+-...+.+.++... ++|.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~----~~~~~~~~~v~~~~~~-g~dv 271 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPK----DSDKPVHERIREMTGG-GVDY 271 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecc----cccchHHHHHHHHhCC-CCCE
Confidence 345789999999999999999999999 477775544433333333 23333210 0000012334444333 7999
Q ss_pred EEeCCCc
Q 009316 147 LHPGYGF 153 (537)
Q Consensus 147 V~pg~g~ 153 (537)
|+-..|.
T Consensus 272 vid~~G~ 278 (381)
T PLN02740 272 SFECAGN 278 (381)
T ss_pred EEECCCC
Confidence 9987663
No 472
>PRK07048 serine/threonine dehydratase; Validated
Probab=61.10 E-value=66 Score=32.92 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=56.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+.+..|..+..++-+|+.+|++++++-+... . +.-++..+..|++.++.+.
T Consensus 73 ~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~-------------------------~-~~k~~~~~~~GAeV~~~~~ 126 (321)
T PRK07048 73 AGVVTFSSGNHAQAIALSARLLGIPATIVMPQDA-------------------------P-AAKVAATRGYGGEVVTYDR 126 (321)
T ss_pred CcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC-------------------------C-HHHHHHHHHCCCEEEEECC
Confidence 4688889999999999999999999988843211 1 1234566677888776442
Q ss_pred CcccccHHHH-HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAENAVFV-EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~~~~a-~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+ .+...++ ++.++.|..++.|-.......+.+....+++++.+
T Consensus 127 ~~-~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~EI~~q~~ 171 (321)
T PRK07048 127 YT-EDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAKELFEEVG 171 (321)
T ss_pred CH-HHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHHHHHhhcC
Confidence 11 1222233 23344566665432122223344555555555543
No 473
>PRK05876 short chain dehydrogenase; Provisional
Probab=61.03 E-value=31 Score=34.24 Aligned_cols=35 Identities=9% Similarity=-0.024 Sum_probs=29.1
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.+.|++||.| .+.++..+++.+.+.|++++++..+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899999 5789999999999999998887543
No 474
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.03 E-value=1.6e+02 Score=30.43 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHcC-CcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc---CCCEEEeCCCccccc
Q 009316 82 IAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR---GCTMLHPGYGFLAEN 157 (537)
Q Consensus 82 ia~~ii~aa~~~G-i~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~---~~d~V~pg~g~lsE~ 157 (537)
-|+++++-+|+++ ...|=+. .++ .....+.|+...++.++.. +..... +.+++
T Consensus 151 eAv~~a~lare~~~~~~iKlE-----------------vi~--e~~~llpd~~~~v~aa~~L~~~Gf~v~~----yc~~d 207 (326)
T PRK11840 151 EAVRTLRLAREAGGWDLVKLE-----------------VLG--DAKTLYPDMVETLKATEILVKEGFQVMV----YCSDD 207 (326)
T ss_pred HHHHHHHHHHHhcCCCeEEEE-----------------EcC--CCCCcccCHHHHHHHHHHHHHCCCEEEE----EeCCC
Confidence 3788888888874 2222220 121 1222356888999999987 776533 34478
Q ss_pred HHHHHHHHHCCCceeCCCHH---HHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCcEEEeecCCCCC
Q 009316 158 AVFVEMCREHGINFIGPNPD---SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234 (537)
Q Consensus 158 ~~~a~~~e~~Gl~~iGp~~~---~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~PvvvKp~~g~gg 234 (537)
+..++.++++|...+-|=++ +-.-..|+...+.+.+...+|+.-. .-+.+.+++..+. ++|+--|+= .
T Consensus 208 ~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivd--AGIg~~sda~~Am-elGadgVL~------n 278 (326)
T PRK11840 208 PIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVD--AGVGTASDAAVAM-ELGCDGVLM------N 278 (326)
T ss_pred HHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEe--CCCCCHHHHHHHH-HcCCCEEEE------c
Confidence 89999999998753333011 1112337888888888877887655 5567888887766 466654432 2
Q ss_pred cceEEeCCHHHHHHHHHHHHHHHHHhcC
Q 009316 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (537)
Q Consensus 235 ~Gv~~v~~~~el~~~~~~~~~~~~~~~g 262 (537)
.+|....|+-...++|..+-..++.+|.
T Consensus 279 SaIa~a~dPv~Ma~A~~~av~aGr~a~~ 306 (326)
T PRK11840 279 TAIAEAKNPVLMARAMKLAVEAGRLAYL 306 (326)
T ss_pred ceeccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999988777665554
No 475
>PRK05717 oxidoreductase; Validated
Probab=61.03 E-value=33 Score=33.33 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=28.6
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.|. |.++..+++.+.+.|.++++++..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence 478999994 889999999999999999888543
No 476
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.97 E-value=56 Score=35.72 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=55.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCE----EEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE----SVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~----~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
.++|+|+|-|..+..+++.++++|++|.+.+....... ...+... .+..+ ++ +.+.+ .++|.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~-~~~L~~~~~~~~~~~g------~~-~~~~~------~~~d~ 72 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPN-LAALRAELPDAEFVGG------PF-DPALL------DGVDL 72 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchh-HHHHHhhcCCcEEEeC------CC-chhHh------cCCCE
Confidence 47899999999999999999999999888754332111 1112111 12221 11 11111 25788
Q ss_pred EEeCCCccccc----HHHHHHHHHCCCceeCCCHHHH
Q 009316 147 LHPGYGFLAEN----AVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 147 V~pg~g~lsE~----~~~a~~~e~~Gl~~iGp~~~~i 179 (537)
|+-..|....+ +. ...+++.|+++++ ..+.+
T Consensus 73 vv~sp~I~~~~~~~~~~-~~~a~~~~i~v~~-~~e~~ 107 (498)
T PRK02006 73 VALSPGLSPLEAALAPL-VAAARERGIPVWG-EIELF 107 (498)
T ss_pred EEECCCCCCcccccCHH-HHHHHHCCCcEEE-HHHHH
Confidence 88766654444 44 4445778999883 44443
No 477
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=60.91 E-value=26 Score=35.75 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=29.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d 105 (537)
-++|||.|.|.++..+++.|+.+|.+++++....+
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~ 198 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSD 198 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 47899999999999999999999999888755433
No 478
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=60.88 E-value=1.6e+02 Score=28.25 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=60.8
Q ss_pred cCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc
Q 009316 78 NRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN 157 (537)
Q Consensus 78 ~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~g~lsE~ 157 (537)
...+-+..+++++.+.|++++=|+-+.. .-.+.|.++.++++ + ++-|-|.. -+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~------------------------~a~~~i~~l~~~~~-~-~~vGAGTV-l~ 69 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTP------------------------VALDAIRLLRKEVP-D-ALIGAGTV-LN 69 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCc------------------------cHHHHHHHHHHHCC-C-CEEEEEeC-CC
Confidence 3456789999999999999987753211 11223444444433 4 33344432 23
Q ss_pred HHHHHHHHHCCCcee-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCcCCCCHHHHHHHHHhcCCc
Q 009316 158 AVFVEMCREHGINFI-GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP 223 (537)
Q Consensus 158 ~~~a~~~e~~Gl~~i-Gp~~~~i~~~~dK~~~r~~l~~~Gvpvp~~~~~~v~~~~~~~~~~~~ig~P 223 (537)
.+-++.+.+.|-.|+ .|.. |+. .-+.++++|+|..|+ +.++.|+..+. +.|+.
T Consensus 70 ~~~a~~a~~aGA~FivsP~~-------~~~-v~~~~~~~~i~~iPG----~~TptEi~~A~-~~Ga~ 123 (204)
T TIGR01182 70 PEQLRQAVDAGAQFIVSPGL-------TPE-LAKHAQDHGIPIIPG----VATPSEIMLAL-ELGIT 123 (204)
T ss_pred HHHHHHHHHcCCCEEECCCC-------CHH-HHHHHHHcCCcEECC----CCCHHHHHHHH-HCCCC
Confidence 445566667777765 2221 333 333577888888887 45666765544 35553
No 479
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=60.87 E-value=44 Score=34.71 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=53.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+-+..|.-|..++-+|+.+|++.+++-+. .....=++..+.+|.+.|.-|-
T Consensus 75 ~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~--------------------------~tp~~Kv~a~r~~GaeVil~g~ 128 (347)
T COG1171 75 AGVIAASAGNHAQGVAYAAKRLGIKATIVMPE--------------------------TTPKIKVDATRGYGAEVILHGD 128 (347)
T ss_pred CceEEecCCcHHHHHHHHHHHhCCCEEEEecC--------------------------CCcHHHHHHHHhcCCEEEEECC
Confidence 34777778999999999999999999988321 1233445667778888888665
Q ss_pred CcccccHHHHHHHHHCCCceeCC
Q 009316 152 GFLAENAVFVEMCREHGINFIGP 174 (537)
Q Consensus 152 g~lsE~~~~a~~~e~~Gl~~iGp 174 (537)
.|........+..++.|+.|+-|
T Consensus 129 ~~dda~~~a~~~a~~~G~~~i~p 151 (347)
T COG1171 129 NFDDAYAAAEELAEEEGLTFVPP 151 (347)
T ss_pred CHHHHHHHHHHHHHHcCCEEeCC
Confidence 45322234445677888888833
No 480
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=60.74 E-value=21 Score=36.69 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=53.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~-~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~ 148 (537)
-++|||.|.|.++...++.|+.+|.. ++++...++......++ +|..+.. .. .+.+++.+. ..++|.|+
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~----~~---~~~~~~~~~--~g~~D~vi 240 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNP----QN---DDLDHYKAE--KGYFDVSF 240 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecC----Cc---ccHHHHhcc--CCCCCEEE
Confidence 57899999999999999999999995 66665444433333333 2333321 11 122232221 12489999
Q ss_pred eCCCcccccHHHHHHHHHCCC-ceeCC
Q 009316 149 PGYGFLAENAVFVEMCREHGI-NFIGP 174 (537)
Q Consensus 149 pg~g~lsE~~~~a~~~e~~Gl-~~iGp 174 (537)
-..|...-.....+.+...|. ..+|.
T Consensus 241 d~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 241 EVSGHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 776642111234455556664 33453
No 481
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=60.62 E-value=63 Score=32.57 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=27.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~ 101 (537)
+.|+.+..|..+..++.+|+.+|++++++.
T Consensus 66 ~~iv~~ssGN~g~alA~~a~~~G~~~~ivv 95 (304)
T cd01562 66 KGVVAASAGNHAQGVAYAAKLLGIPATIVM 95 (304)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 468888999999999999999999999885
No 482
>PLN02550 threonine dehydratase
Probab=60.48 E-value=61 Score=36.30 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=56.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009316 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~V~pg~ 151 (537)
+.|+-+..|.-|..++-+|+++|++++++-+...+ ..-++..+.+|++.+.-+.
T Consensus 158 ~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp--------------------------~~Kv~~~r~~GAeVvl~g~ 211 (591)
T PLN02550 158 KGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTP--------------------------EIKWQSVERLGATVVLVGD 211 (591)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCC--------------------------HHHHHHHHHcCCEEEEeCC
Confidence 34777778999999999999999999888432211 1223444566666666443
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHcC
Q 009316 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~lsE~-~~~a~~~e~~Gl~~iGp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.| .|. ....+.+++.|..|+.|-.+.....+.+....+++++.+
T Consensus 212 ~~-dea~~~A~~la~e~g~~fi~pfddp~viaGqgTig~EI~eQl~ 256 (591)
T PLN02550 212 SY-DEAQAYAKQRALEEGRTFIPPFDHPDVIAGQGTVGMEIVRQHQ 256 (591)
T ss_pred CH-HHHHHHHHHHHHhcCCEEECCCCChHHHHHHHHHHHHHHHHcC
Confidence 22 121 122234455566666443222333445666666666653
No 483
>PRK06196 oxidoreductase; Provisional
Probab=60.43 E-value=15 Score=37.39 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~-g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|+|||.|. |.++..+++.+.+.|++++++..+
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999995 789999999999999999988644
No 484
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=60.31 E-value=29 Score=35.62 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcE-EEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC-E
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPC-VAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCT-M 146 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~-v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d-~ 146 (537)
.-++|||.|.|.++..+++.|+.+|.++ +++.+.++.......+ +|..+.. ++ .+.+.+.++....++| .
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~------~~-~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNS------RE-MSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecC------cc-cCHHHHHHHhcCCCCCeE
Confidence 3579999999999999999999999985 5554333322221111 2333321 11 1245566665556788 7
Q ss_pred EEeCCCcccccHHHHHHHHHCCCc-eeC
Q 009316 147 LHPGYGFLAENAVFVEMCREHGIN-FIG 173 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl~-~iG 173 (537)
|+=..|.-+-.....+++...|.. ++|
T Consensus 233 v~d~~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 233 ILETAGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 775555311112344566666643 345
No 485
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=60.25 E-value=35 Score=36.91 Aligned_cols=74 Identities=5% Similarity=-0.038 Sum_probs=51.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCC--c--h--h-hccC-----EEEEcCCCCCCCCCCCHHHHHHH
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--L--H--V-KLAD-----ESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~--~--~--~-~~ad-----~~~~i~~~~~~~sy~~~~~i~~~ 138 (537)
.||+.+.|.......+++.+.++|++++.+.+...... . . . .+++ ..+.+ +-.|...+.+.
T Consensus 314 GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~viv-------e~~D~~el~~~ 386 (457)
T CHL00073 314 GKSVFFMGDNLLEISLARFLIRCGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIV-------EKPDNYNQIQR 386 (457)
T ss_pred CCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEE-------eCCCHHHHHHH
Confidence 58899999888999999999999999998865421111 0 0 1 1111 12222 23578889999
Q ss_pred HHHcCCCEEEeCC
Q 009316 139 AISRGCTMLHPGY 151 (537)
Q Consensus 139 a~~~~~d~V~pg~ 151 (537)
+++.++|.++.|.
T Consensus 387 i~~~~pDLlIgG~ 399 (457)
T CHL00073 387 IRELQPDLAITGM 399 (457)
T ss_pred HhhCCCCEEEccc
Confidence 9999999999774
No 486
>PLN02253 xanthoxin dehydrogenase
Probab=60.24 E-value=33 Score=33.94 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|+++++++..
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999 4789999999999999999988643
No 487
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=60.22 E-value=14 Score=39.02 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=29.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|++|+|+|+|-++..++..+.+.|.+|+++...
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 369999999999999999999999999999543
No 488
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=60.13 E-value=37 Score=35.99 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=54.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCchh---hc--cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KL--ADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~---~~--ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d 145 (537)
.+|+.|.+.+.....+.+.++++|++++.+.+......... .. .+..+ ++ -.+...+.+.+++.++|
T Consensus 286 gkrv~I~~~~~~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~pd 357 (406)
T cd01967 286 GKKVIIYTGGARSWHVIAALRELGMEVVAAGYEFGHDDDYERIRKILDEGTLL-VD-------DYNDLELEELVEKLKPD 357 (406)
T ss_pred CCEEEEEccCcchHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHhcCCCCcEE-Ee-------CCCHHHHHHHHHhcCCC
Confidence 47888887777777778999999999876644322111111 11 12222 21 24566788888888999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcee
Q 009316 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 146 ~V~pg~g~lsE~~~~a~~~e~~Gl~~i 172 (537)
.++.+.. + ....++.|++++
T Consensus 358 l~ig~~~---~----~~~a~~~gip~~ 377 (406)
T cd01967 358 LILSGIK---E----KYVAQKLGIPFL 377 (406)
T ss_pred EEEeCCc---c----hHHHHhcCCCEE
Confidence 9995431 2 234456788875
No 489
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=60.12 E-value=52 Score=31.38 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.2
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
+++||.| .|.++..+++.+.+.|++++++....
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~ 39 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASS 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999 58899999999999999987776443
No 490
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=60.11 E-value=19 Score=37.28 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCC-cEEEEecCCCCCCchhhc-cCEEEEcCCCCCCCCCCC-HHHHHHHHHHcCCCE
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLL-IPNVLSAAISRGCTM 146 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi-~~v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~sy~~-~~~i~~~a~~~~~d~ 146 (537)
..++|||.|.|.++..+++.|+.+|+ +++++.+..+......++ ++..+.. ...++.+ .+.+.+.....++|.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~----~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDI----DELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcC----cccccHHHHHHHHHHhCCCCCcE
Confidence 45789999999999999999999999 777765433322211122 2333321 1011111 124444444457999
Q ss_pred EEeCCCcccccHHHHHHHHHCCC
Q 009316 147 LHPGYGFLAENAVFVEMCREHGI 169 (537)
Q Consensus 147 V~pg~g~lsE~~~~a~~~e~~Gl 169 (537)
++...|.-.-.....+.+...|.
T Consensus 253 vid~~g~~~~~~~~~~~l~~~G~ 275 (361)
T cd08231 253 VIEASGHPAAVPEGLELLRRGGT 275 (361)
T ss_pred EEECCCChHHHHHHHHHhccCCE
Confidence 99776531111233344445553
No 491
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.11 E-value=14 Score=39.87 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH 110 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~ 110 (537)
+|.++|.|+|.|..++..++.|++.|++++++....+-...+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE
Confidence 456899999999999999999999999999997655544433
No 492
>PRK08401 L-aspartate oxidase; Provisional
Probab=60.09 E-value=34 Score=37.07 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=29.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
|+.|||+|.|..++..+-+|++.|.+|+++...
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999999999999999999999999999644
No 493
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=60.09 E-value=13 Score=39.02 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009316 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 69 ~~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~ 102 (537)
++...|+|+|.|..+.-++.++.+.|++|+++..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~ 37 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEG 37 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeC
Confidence 4456799999999999999999999999999853
No 494
>PRK07035 short chain dehydrogenase; Provisional
Probab=60.03 E-value=31 Score=33.42 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=28.7
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999 5789999999999999999988654
No 495
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=60.03 E-value=30 Score=39.30 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHc-CCcEEEEecCCCCCCchhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009316 69 CRQEKILVAN-RGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 69 ~~~~~iLI~~-~g~ia~~ii~aa~~~-Gi~~v~v~~~~d~~~~~~~~ad~~~~i~~~~~~~sy~~~~~i~~~a~~~~~d~ 146 (537)
...++|||.| .|-++..+++.+.+. |++|+++...............-.+..+ +..|.+..++.+.+ ++|+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~g------Dl~d~~~~l~~~l~-~~D~ 385 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEG------DISIHSEWIEYHIK-KCDV 385 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEec------cccCcHHHHHHHhc-CCCE
Q ss_pred EE
Q 009316 147 LH 148 (537)
Q Consensus 147 V~ 148 (537)
|+
T Consensus 386 Vi 387 (660)
T PRK08125 386 VL 387 (660)
T ss_pred EE
No 496
>PRK09126 hypothetical protein; Provisional
Probab=60.02 E-value=14 Score=38.76 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=30.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
|...|+|+|+|..+.-.+.++.+.|++|+++....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34579999999999999999999999999985433
No 497
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=60.00 E-value=15 Score=39.21 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~~iLI~~~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.-++|+|+|.|.++..+++.++.+|.+++++..++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45899999999999999999999999887764443
No 498
>PRK06914 short chain dehydrogenase; Provisional
Probab=59.95 E-value=32 Score=33.93 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=29.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~~ 104 (537)
.+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~ 37 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP 37 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46789999 58899999999999999999886544
No 499
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.93 E-value=37 Score=33.01 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEecC
Q 009316 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~~iLI~~-~g~ia~~ii~aa~~~Gi~~v~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|+++++++..
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 37899999 5889999999999999998887543
No 500
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=59.93 E-value=19 Score=32.34 Aligned_cols=50 Identities=18% Similarity=0.067 Sum_probs=37.4
Q ss_pred CCEEEEEcCcH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhhccCEEEEc
Q 009316 71 QEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120 (537)
Q Consensus 71 ~~~iLI~~~g~-ia~~ii~aa~~~Gi~~v~v~~~~d~~~~~~~~ad~~~~i 120 (537)
.|+|+|+||+. .+..++.-+.+.|..+.++++.......+.+.||-.+..
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsA 78 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVG 78 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEe
Confidence 58999999866 488899999999999999975443333456777766654
Done!