Your job contains 1 sequence.
>009317
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREIST
GKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVA
LGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEK
DRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKER
ALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQ
DGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQS
LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVV
SRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEA
YYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSRTHMA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009317
(537 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031835 - symbol:GLE1 species:3702 "Arabidopsi... 723 1.4e-74 2
TAIR|locus:504955347 - symbol:AT4G05523 "AT4G05523" speci... 177 8.6e-13 1
ZFIN|ZDB-GENE-040831-4 - symbol:gle1 "GLE1 RNA export med... 148 1.3e-07 2
UNIPROTKB|F1RR80 - symbol:GLE1 "Uncharacterized protein" ... 150 3.6e-07 1
UNIPROTKB|B3KMG0 - symbol:GLE1 "Nucleoporin GLE1" species... 143 1.0e-06 1
UNIPROTKB|E2RSW4 - symbol:GLE1 "Uncharacterized protein" ... 145 1.3e-06 1
UNIPROTKB|Q53GS7 - symbol:GLE1 "Nucleoporin GLE1" species... 143 2.1e-06 1
RGD|1310843 - symbol:Gle1-ps1 "GLE1 RNA export mediator h... 140 4.5e-06 1
MGI|MGI:1921662 - symbol:Gle1 "GLE1 RNA export mediator (... 140 4.5e-06 1
RGD|1307329 - symbol:Gle1 "GLE1 RNA export mediator homol... 142 7.1e-06 2
UNIPROTKB|Q3ZBK7 - symbol:GLE1 "Nucleoporin GLE1" species... 138 7.4e-06 1
UNIPROTKB|E1BT81 - symbol:GLE1 "Uncharacterized protein" ... 129 9.0e-05 2
DICTYBASE|DDB_G0267918 - symbol:DDB_G0267918 "Nucleoporin... 118 0.00030 3
RGD|1565693 - symbol:RGD1565693 "similar to GLE1-like, RN... 126 0.00098 2
>TAIR|locus:2031835 [details] [associations]
symbol:GLE1 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006312 "mitotic
recombination" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0048316 "seed development"
evidence=IMP] InterPro:IPR012476 Pfam:PF07817 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005635 GO:GO:0005643 GO:GO:0048316
GO:GO:0016973 PANTHER:PTHR12960 EMBL:AK228913 IPI:IPI00526811
RefSeq:NP_172771.1 UniGene:At.27690 ProteinModelPortal:Q0WPZ7
STRING:Q0WPZ7 PaxDb:Q0WPZ7 PRIDE:Q0WPZ7 EnsemblPlants:AT1G13120.1
GeneID:837869 KEGG:ath:AT1G13120 TAIR:At1g13120 eggNOG:NOG300781
InParanoid:Q0WPZ7 OMA:ACDELYL PhylomeDB:Q0WPZ7
ProtClustDB:CLSN2914234 Genevestigator:Q0WPZ7 Uniprot:Q0WPZ7
Length = 611
Score = 723 (259.6 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 175/433 (40%), Positives = 248/433 (57%)
Query: 1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREIS 59
MG + LE CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN S P P T T R
Sbjct: 1 MGIV-LEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR--- 56
Query: 60 TGKSVESNARAFVIRVSDDELEND-----NERKGEEVHNGSLVAVKRFTCDALYLSEXXX 114
G+ FV+ VS+DE+E+D ++ + EE H+ A KRF CD LYLS+
Sbjct: 57 MGR----RGGGFVMHVSEDEMESDEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESD 112
Query: 115 XXXXVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSA 174
Y+M+++GLA+ AL E+ + HQ +K++IRN +S +ET++++E E S SA
Sbjct: 113 EEFDHE---PEYMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSA 169
Query: 175 LAQVXXXXXXXXXXXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDXXXXX 234
+A+V YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+
Sbjct: 170 IARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEE 229
Query: 235 XXXXXXXLQEEKIRQEKVKAEAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKRI 294
QEEKIRQEK +AEA+M + K
Sbjct: 230 ARRKERAHQEEKIRQEKARAEAQM----LAKIRAEEEKKEVERKAAREVAEKEVADRKAA 285
Query: 295 TAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKEL 354
+++ A SS + AQ+ G+ ++RA ESAL +E RL+KL+EL
Sbjct: 286 EQKLAEQKAVIESVTGSSATSNAQAGGN----------SIRAAESALILENHRLKKLEEL 335
Query: 355 DEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLAT 414
+ NQSLK SNE+FS +EK I R+IRQI G KD+V K +++VKI +P CP SIS+A
Sbjct: 336 ETTNQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISIAA 395
Query: 415 FSKKVVSRCETPD 427
F+KK+V+ E P+
Sbjct: 396 FAKKMVTTKEKPN 408
Score = 419 (152.6 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 128/411 (31%), Positives = 193/411 (46%)
Query: 71 FVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEXXXXXXXVALGGESYLMDE 130
FV+ VS+DE+E+D +GEE + E + G+ + DE
Sbjct: 64 FVMHVSEDEMESD---EGEESDD----------------EEEEEDHSQICTAGKRFACDE 104
Query: 131 VGLADGALVELTHQ-----HQLGVKEE-IRNLISTLETQLISENEQSNSALAQVXXXXXX 184
+ L+D + E H+ ++LG+ E + +I+ +T++ + S +
Sbjct: 105 LYLSDESDEEFDHEPEYMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIE 164
Query: 185 XXXXXXXXXTVY---QRKIAEALD---NHLTAVQRDHELKSQIEERKIRSDXXXXXXXXX 238
Y ++++ LD A D L + E KI+S
Sbjct: 165 TSLSAIARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSE 224
Query: 239 XXXLQEEKIRQEKVKAEAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKRITAGV 298
QEE R+E+ E +++ +++ A
Sbjct: 225 EA--QEEARRKERAHQEEKIRQEKARAEAQMLAKIRAEEEKKEVERKAAREVAEKEVA-- 280
Query: 299 SQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEEN 358
+ A + + +VI + S+ S +RA ESAL +E RL+KL+EL+ N
Sbjct: 281 DRKAAEQKLAEQKAVIESVTGSSATSNAQAGGNS-IRAAESALILENHRLKKLEELETTN 339
Query: 359 QSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKK 418
QSLK SNE+FS +EK I R+IRQI G KD+V K +++VKI +P CP SIS+A F+KK
Sbjct: 340 QSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISIAAFAKK 399
Query: 419 VVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIV 469
+V+ E P+ +C YVIV + SQ PQVMDILL EFH+ACIYTVPKHIV
Sbjct: 400 MVTTKEKPNP---FACSYVIVYINSQFPQVMDILLAEFHKACIYTVPKHIV 447
Score = 48 (22.0 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 503 RLKSYMRLYAALIQ 516
RL S MRLY AL+Q
Sbjct: 460 RLDSIMRLYGALVQ 473
>TAIR|locus:504955347 [details] [associations]
symbol:AT4G05523 "AT4G05523" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR012476 EMBL:CP002687 GO:GO:0005643
GO:GO:0016973 PANTHER:PTHR12960 IPI:IPI00538758 RefSeq:NP_680605.1
UniGene:At.54169 PRIDE:F4JGH3 EnsemblPlants:AT4G05523.1
GeneID:825903 KEGG:ath:AT4G05523 PhylomeDB:F4JGH3 Uniprot:F4JGH3
Length = 221
Score = 177 (67.4 bits), Expect = 8.6e-13, P = 8.6e-13
Identities = 60/171 (35%), Positives = 91/171 (53%)
Query: 10 CPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREISTGKSVESNA 68
CP+ V+G + DPEP+ SFD L+SE S E +LNA +K PFTKT SR +
Sbjct: 9 CPKSVEGFSYDPEPNRSFDRLVSETESFEKKLNAFTKFHQPFTKTTSRT-----DI---- 59
Query: 69 RAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEXXXXXXXVALGGESYLM 128
AFV+RVS+D++++D + + + + + TCD LYLS+ + E +M
Sbjct: 60 -AFVMRVSEDDMDSDEDVENNDQQDKEESQI--CTCDDLYLSDDDEFDHEL----EYTIM 112
Query: 129 DEVG--LADGA-LVELTH--QHQLGVKE-EIRNLIS-TLETQLISENEQSN 172
+++G LA+ + T Q+Q+ V E EIRN I L + E + N
Sbjct: 113 NKMGPALAENDHQTKSTEDIQNQVSVVEKEIRNEIERALSAIALVEKYREN 163
Score = 164 (62.8 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 48/168 (28%), Positives = 88/168 (52%)
Query: 53 TKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEX 112
TK + T K+ AFV+RVS+D++++D + + + + + TCD LYLS+
Sbjct: 44 TKFHQPFT-KTTSRTDIAFVMRVSEDDMDSDEDVENNDQQDKEESQI--CTCDDLYLSDD 100
Query: 113 XXXXXXVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSN 172
+ E +M+++G AL E + HQ E+I+N +S +E ++ +E E++
Sbjct: 101 DEFDHEL----EYTIMNKMG---PALAE--NDHQTKSTEDIQNQVSVVEKEIRNEIERAL 151
Query: 173 SALAQVXXXXXXXXXXXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQ 220
SA+A V Y+R+++EAL+ H+ V+R+H + S+
Sbjct: 152 SAIALVEKYRENRREVERSLDLQYKREVSEALETHMNVVKREHAIISK 199
>ZFIN|ZDB-GENE-040831-4 [details] [associations]
symbol:gle1 "GLE1 RNA export mediator homolog
(yeast)" species:7955 "Danio rerio" [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] InterPro:IPR012476
Pfam:PF07817 ZFIN:ZDB-GENE-040831-4 GO:GO:0005643 GO:GO:0016973
GeneTree:ENSGT00390000012903 HOGENOM:HOG000246966
HOVERGEN:HBG081558 OMA:KEEHRHR PANTHER:PTHR12960 EMBL:BX088526
IPI:IPI00919610 UniGene:Dr.83661 Ensembl:ENSDART00000128227
Uniprot:B0S5D2
Length = 717
Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 38/118 (32%), Positives = 63/118 (53%)
Query: 407 PQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQVMDILLGEFHR 458
PQ + A++ ++K V + E + VA S + I VAS + P++ D++L H+
Sbjct: 489 PQGLEFASYRLAEKFVKQGE---EEVASNHSAAFPIGAVASGIWELHPKIGDLILAHLHK 545
Query: 459 ACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
C Y VP + Y K +GYR ++GK+E +++L R+ +RLYAA+IQ
Sbjct: 546 KCPYAVPHY--PPMESGTSVEDYQKILGYRVDEGKVEGQDSFLKRMSGMIRLYAAIIQ 601
Score = 52 (23.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 194 TVYQRKIAE-ALDNHLTAVQRDHELKSQIEERKIRSDXXXXXXXXXXXXLQEEKIRQEKV 252
+V +AE AL + V+ E SQ ERK + + +EEK RQE++
Sbjct: 324 SVEDLSVAERALQEMRSLVRSLQEAVSQAAERKKKKEQEE----------EEEKRRQEQL 373
Query: 253 KAEAEMQ 259
KA+ E Q
Sbjct: 374 KAQQEEQ 380
Score = 51 (23.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/69 (21%), Positives = 37/69 (53%)
Query: 328 KKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLK 387
++++S VR+ + A++ +R +K KE +EE + + + +K + L + + K
Sbjct: 336 QEMRSLVRSLQEAVSQAAERKKK-KEQEEEEEKRRQEQLKAQQEEQKKSAALSAKEKAKK 394
Query: 388 DNVRTKASE 396
+ ++T A +
Sbjct: 395 EGLQTGADD 403
Score = 44 (20.5 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 335 RATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKA 394
R + N E ++L++ +E E Q + S D + EK+ + G ++ +R +
Sbjct: 178 RLVATVANHESEQLKRFEEFMELKQRQEHQSIRDTN--EKEAQESL----GRQEKLREEH 231
Query: 395 SELVKILN 402
+KILN
Sbjct: 232 RHRMKILN 239
>UNIPROTKB|F1RR80 [details] [associations]
symbol:GLE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
InterPro:IPR012476 Pfam:PF07817 GO:GO:0005643 GO:GO:0016973
GeneTree:ENSGT00390000012903 OMA:KEEHRHR PANTHER:PTHR12960
EMBL:CU862000 EMBL:CU467095 RefSeq:XP_003122270.2
Ensembl:ENSSSCT00000006215 GeneID:100519463 KEGG:ssc:100519463
Uniprot:F1RR80
Length = 698
Score = 150 (57.9 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 59/228 (25%), Positives = 107/228 (46%)
Query: 302 GACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA----VRATESALNIEQKRLQKLKELDEE 357
G G+Q +D V + + S ++LQ A V A E N + + +K+K ++
Sbjct: 369 GPGGKQIEDLQV----KVQDSTMQWYQQLQDASNQCVLAFEGLTNSKDSQAKKIKMDLQK 424
Query: 358 NQSLKLSSNEDFSGYE-KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATF- 415
++ +S +G + K++ I + K V++ + LN PQ + +
Sbjct: 425 AATIPVSQISTIAGSKLKEVFDKIHSLLSGKP-VQSGGRSVSVTLN----PQGLDFVQYK 479
Query: 416 -SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHI 468
++K V + E + VA + I +VAS + P+V D++L H+ C Y+VP +
Sbjct: 480 LAEKFVKQGE---EEVASHHEAAFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFY- 535
Query: 469 VXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
Y + +GY+ +D K+E +N+L R+ +RLYAA+IQ
Sbjct: 536 -PAFKEGMALEDYQRMLGYQVKDSKVEQQDNFLKRMSGMIRLYAAIIQ 582
>UNIPROTKB|B3KMG0 [details] [associations]
symbol:GLE1 "Nucleoporin GLE1" species:9606 "Homo sapiens"
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IEA] InterPro:IPR012476 Pfam:PF07817
GO:GO:0005643 GO:GO:0016973 CTD:2733 HOVERGEN:HBG081558
PANTHER:PTHR12960 EMBL:AL445287 EMBL:AL356481 RefSeq:NP_001490.1
UniGene:Hs.522418 DNASU:2733 GeneID:2733 KEGG:hsa:2733
HGNC:HGNC:4315 PharmGKB:PA28718 GenomeRNAi:2733 NextBio:10770
EMBL:AK001767 IPI:IPI01012645 STRING:B3KMG0 Ensembl:ENST00000539582
Uniprot:B3KMG0
Length = 444
Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/188 (26%), Positives = 90/188 (47%)
Query: 338 ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYE-KDISRLIRQIRGLKDNVRTKASE 396
E N + + +K+K ++ ++ +S +G + K+I I + K V++
Sbjct: 151 EGLTNSKDSQAKKIKMDLQKAATIPVSQISTIAGSKLKEIFDKIHSLLSGKP-VQSGGRS 209
Query: 397 LVKILNNPLCPQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQV 448
+ LN PQ + + ++K V + E + VA + I +VAS + P+V
Sbjct: 210 VSVTLN----PQGLDFVQYKLAEKFVKQGE---EEVASHHEAAFPIAVVASGIWELHPRV 262
Query: 449 MDILLGEFHRACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYM 508
D++L H+ C Y+VP + Y + +GY+ +D K+E +N+L R+ +
Sbjct: 263 GDLILAHLHKKCPYSVPFY--PTFKEGMALEDYQRMLGYQVKDSKVEQQDNFLKRMSGMI 320
Query: 509 RLYAALIQ 516
RLYAA+IQ
Sbjct: 321 RLYAAIIQ 328
>UNIPROTKB|E2RSW4 [details] [associations]
symbol:GLE1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
InterPro:IPR012476 Pfam:PF07817 GO:GO:0005643 GO:GO:0016973
GeneTree:ENSGT00390000012903 OMA:KEEHRHR PANTHER:PTHR12960
EMBL:AAEX03006855 Ensembl:ENSCAFT00000031904 Uniprot:E2RSW4
Length = 697
Score = 145 (56.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 64/237 (27%), Positives = 109/237 (45%)
Query: 293 RITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA----VRATESALNIEQKRL 348
R T +Q G G+Q +D V + + S ++LQ A V A E N + +
Sbjct: 361 RETPAPNQ-GPGGKQNEDLQV----KVQDSTMQWYQQLQEASNQCVLAFEELTNSKDSQA 415
Query: 349 QKLKELDEENQSLKLSSNEDFSGYE-KDISRLIRQIRGLKDNVRTKASELVKILNNPLCP 407
+K+K ++ ++ +S +G + K+I I + K V+ + LN P
Sbjct: 416 KKIKMDLQKAATIPVSQISTIAGSKLKEIFDKIHSLLSGKP-VQCGGHSVSVTLN----P 470
Query: 408 QSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQVMDILLGEFHRA 459
Q + + ++K V + E + VA + I +VAS + P+V D++L HR
Sbjct: 471 QGLDFVQYKLAEKFVKQGE---EEVASHHEAAFPIAVVASGIWELHPRVGDLILAHLHRK 527
Query: 460 CIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
C Y+VP + Y + +GY+ +D K+E +N+L R+ +RLYAA IQ
Sbjct: 528 CPYSVPFY--PAFKEGMALEDYQRMLGYQVKDSKVEQ-DNFLKRMSGMIRLYAAFIQ 581
>UNIPROTKB|Q53GS7 [details] [associations]
symbol:GLE1 "Nucleoporin GLE1" species:9606 "Homo sapiens"
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0005643 "nuclear
pore" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=TAS]
InterPro:IPR012476 Pfam:PF07817 GO:GO:0005737 GO:GO:0015031
GO:GO:0005643 GO:GO:0006406 GO:GO:0016973 CTD:2733 eggNOG:NOG330485
HOGENOM:HOG000246966 HOVERGEN:HBG081558 OMA:KEEHRHR
OrthoDB:EOG4GB75R PANTHER:PTHR12960 EMBL:AF058922 EMBL:AK222842
EMBL:AK222854 EMBL:AL445287 EMBL:AL356481 EMBL:BC030012
EMBL:AL117584 IPI:IPI00301647 IPI:IPI00411438 PIR:T17316
RefSeq:NP_001003722.1 RefSeq:NP_001490.1 UniGene:Hs.522418
ProteinModelPortal:Q53GS7 SMR:Q53GS7 IntAct:Q53GS7 STRING:Q53GS7
PhosphoSite:Q53GS7 DMDM:83288218 PaxDb:Q53GS7 PRIDE:Q53GS7
DNASU:2733 Ensembl:ENST00000309971 Ensembl:ENST00000372770
GeneID:2733 KEGG:hsa:2733 UCSC:uc004bvi.3 UCSC:uc004bvj.3
GeneCards:GC09P131266 HGNC:HGNC:4315 MIM:253310 MIM:603371
MIM:611890 neXtProt:NX_Q53GS7 Orphanet:53696 Orphanet:1486
PharmGKB:PA28718 InParanoid:Q53GS7 PhylomeDB:Q53GS7 GenomeRNAi:2733
NextBio:10770 ArrayExpress:Q53GS7 Bgee:Q53GS7 CleanEx:HS_GLE1
Genevestigator:Q53GS7 GermOnline:ENSG00000119392 Uniprot:Q53GS7
Length = 698
Score = 143 (55.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 49/188 (26%), Positives = 90/188 (47%)
Query: 338 ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYE-KDISRLIRQIRGLKDNVRTKASE 396
E N + + +K+K ++ ++ +S +G + K+I I + K V++
Sbjct: 405 EGLTNSKDSQAKKIKMDLQKAATIPVSQISTIAGSKLKEIFDKIHSLLSGKP-VQSGGRS 463
Query: 397 LVKILNNPLCPQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQV 448
+ LN PQ + + ++K V + E + VA + I +VAS + P+V
Sbjct: 464 VSVTLN----PQGLDFVQYKLAEKFVKQGE---EEVASHHEAAFPIAVVASGIWELHPRV 516
Query: 449 MDILLGEFHRACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYM 508
D++L H+ C Y+VP + Y + +GY+ +D K+E +N+L R+ +
Sbjct: 517 GDLILAHLHKKCPYSVPFY--PTFKEGMALEDYQRMLGYQVKDSKVEQQDNFLKRMSGMI 574
Query: 509 RLYAALIQ 516
RLYAA+IQ
Sbjct: 575 RLYAAIIQ 582
>RGD|1310843 [details] [associations]
symbol:Gle1-ps1 "GLE1 RNA export mediator homolog (yeast),
pseudogene 1" species:10116 "Rattus norvegicus" [GO:0005643
"nuclear pore" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IEA] InterPro:IPR012476 Pfam:PF07817 RGD:1310843
GO:GO:0005643 GO:GO:0016973 PANTHER:PTHR12960 IPI:IPI00958331
Ensembl:ENSRNOT00000016753 Uniprot:F1M0Z2
Length = 697
Score = 140 (54.3 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 405 LCPQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQVMDILLGEF 456
L PQ + + ++K+V + E+ VA + I VAS + P+V D++L +
Sbjct: 467 LHPQGLDFVQYKVAEKLVKQGES---EVASHPEAAFPIAAVASGIWMLHPRVGDLILAQL 523
Query: 457 HRACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
HR C Y+VP H Y + +GYR D K+E +++L R+ +R YAA+IQ
Sbjct: 524 HRQCPYSVPFH--PAFKEGMALEDYGRMLGYRVTDSKVEEQDHFLKRMSGMIRFYAAIIQ 581
>MGI|MGI:1921662 [details] [associations]
symbol:Gle1 "GLE1 RNA export mediator (yeast)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0016973 "poly(A)+
mRNA export from nucleus" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] InterPro:IPR012476 Pfam:PF07817
MGI:MGI:1921662 GO:GO:0005737 GO:GO:0015031 GO:GO:0005643
GO:GO:0016973 CTD:2733 eggNOG:NOG330485
GeneTree:ENSGT00390000012903 HOVERGEN:HBG081558 OMA:KEEHRHR
OrthoDB:EOG4GB75R PANTHER:PTHR12960 EMBL:AK016671 EMBL:AK028183
EMBL:AK133888 EMBL:AK145748 EMBL:AK150230 EMBL:AK161015
EMBL:AK161659 EMBL:AL928926 EMBL:BC026797 IPI:IPI00137018
RefSeq:NP_083199.1 UniGene:Mm.275121 ProteinModelPortal:Q8R322
STRING:Q8R322 PhosphoSite:Q8R322 PaxDb:Q8R322 PRIDE:Q8R322
Ensembl:ENSMUST00000019859 GeneID:74412 KEGG:mmu:74412
UCSC:uc008jaq.2 InParanoid:A3KGV8 ChiTaRS:GLE1 NextBio:340689
Bgee:Q8R322 CleanEx:MM_GLE1 Genevestigator:Q8R322
GermOnline:ENSMUSG00000019715 Uniprot:Q8R322
Length = 699
Score = 140 (54.3 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 50/192 (26%), Positives = 91/192 (47%)
Query: 334 VRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYE-KDISRLIRQIRGLKDNVRT 392
V A E + + + +K+K ++ ++ +S +G + K+I I + K V++
Sbjct: 402 VLAFEDLTSSKDSQTKKIKMDLQKAATIPVSQISTIAGSKLKEIFDKIHSLLSGKP-VQS 460
Query: 393 KASELVKILNNPLCPQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV--- 445
+ LN PQ + + ++K V + E + VA + I +VAS +
Sbjct: 461 GGRSVSVTLN----PQGLDFVQYKLAEKFVKQGE---EEVASHHEAAFPIAVVASGIWML 513
Query: 446 -PQVMDILLGEFHRACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRL 504
P+V D++L H+ C Y+VP + Y + +GY+ D K+E +N+L R+
Sbjct: 514 HPKVGDLILAHLHKKCPYSVPFY--PAFKEGMALEDYQRMLGYQVTDSKVEQQDNFLKRM 571
Query: 505 KSYMRLYAALIQ 516
+RLYAA+IQ
Sbjct: 572 SGMIRLYAAIIQ 583
>RGD|1307329 [details] [associations]
symbol:Gle1 "GLE1 RNA export mediator homolog (yeast)"
species:10116 "Rattus norvegicus" [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export
from nucleus" evidence=IEA] InterPro:IPR012476 Pfam:PF07817
RGD:1307329 GO:GO:0005737 GO:GO:0015031 GO:GO:0005643 GO:GO:0016973
CTD:2733 eggNOG:NOG330485 GeneTree:ENSGT00390000012903
HOGENOM:HOG000246966 HOVERGEN:HBG081558 OMA:KEEHRHR
OrthoDB:EOG4GB75R PANTHER:PTHR12960 EMBL:BC099088 IPI:IPI00373584
RefSeq:NP_001020902.1 UniGene:Rn.162648 PhosphoSite:Q4KLN4
PRIDE:Q4KLN4 Ensembl:ENSRNOT00000020630 GeneID:362098
KEGG:rno:362098 UCSC:RGD:1307329 InParanoid:Q4KLN4 NextBio:678651
Genevestigator:Q4KLN4 GermOnline:ENSRNOG00000015237 Uniprot:Q4KLN4
Length = 698
Score = 142 (55.0 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 57/225 (25%), Positives = 105/225 (46%)
Query: 305 GRQPDDSSVIAGAQSRGSRSDGTKKLQSA----VRATESALNIEQKRLQKLKELDEENQS 360
G Q +D V + + S ++LQ A V A E + + +++K+K ++ +
Sbjct: 372 GTQSEDLQV----KVQDSTMQWYQQLQDASAKCVLAFEDLTSSKDSQIKKIKMDLQKAAT 427
Query: 361 LKLSSNEDFSGYE-KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATF--SK 417
+ +S +G + K++ I + K V++ + LN PQ + + ++
Sbjct: 428 IPVSQISTIAGSKLKEVFDKIHSLLSGKP-VQSGGRSVCVTLN----PQGLDFVQYKLAE 482
Query: 418 KVVSRCETPDDNVAM--SCGYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVXX 471
K V + E + VA + I +VAS + P+V D++L H+ C Y+VP +
Sbjct: 483 KFVKQGE---EEVASHHEAAFPIAVVASGIWMLHPKVGDLILAHLHKKCPYSVPFY--PA 537
Query: 472 XXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
Y + +GY+ D K+E +N+L R+ +RLYAA+IQ
Sbjct: 538 FKEGMPLEDYQRMLGYQVTDSKVEQQDNFLKRMSGMIRLYAAIIQ 582
Score = 41 (19.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 149 VKEEIRNLISTLETQLISENE 169
V +E+R+L+S LE ++ +E
Sbjct: 315 VLQEMRDLLSNLEQEITRASE 335
>UNIPROTKB|Q3ZBK7 [details] [associations]
symbol:GLE1 "Nucleoporin GLE1" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA]
InterPro:IPR012476 Pfam:PF07817 GO:GO:0005737 GO:GO:0015031
GO:GO:0005643 GO:GO:0016973 EMBL:BC103239 IPI:IPI00708236
RefSeq:NP_001029890.1 UniGene:Bt.49512 STRING:Q3ZBK7 PRIDE:Q3ZBK7
Ensembl:ENSBTAT00000020333 GeneID:540982 KEGG:bta:540982 CTD:2733
eggNOG:NOG330485 GeneTree:ENSGT00390000012903 HOGENOM:HOG000246966
HOVERGEN:HBG081558 InParanoid:Q3ZBK7 OMA:KEEHRHR OrthoDB:EOG4GB75R
NextBio:20878945 PANTHER:PTHR12960 Uniprot:Q3ZBK7
Length = 698
Score = 138 (53.6 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 50/192 (26%), Positives = 91/192 (47%)
Query: 334 VRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYE-KDISRLIRQIRGLKDNVRT 392
V A E N + + +K+K ++ ++ +S +G + K+I I + K V++
Sbjct: 401 VLAFEGLSNSKDSQAKKIKMDLQKAATIPVSQISTIAGSKLKEIFDKIHSLLSGKP-VQS 459
Query: 393 KASELVKILNNPLCPQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV--- 445
+ LN PQ + + ++K V + E + VA + I +VAS +
Sbjct: 460 GGRSVSVTLN----PQGLDFVQYKLAEKFVKQGE---EEVASHHEAAFPIAVVASGIWEL 512
Query: 446 -PQVMDILLGEFHRACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRL 504
P+V ++L H+ C Y+VP + Y + +GY+ +D K+E +N+L R+
Sbjct: 513 HPRVGALILAHLHKKCPYSVPFY--PAFKEGMALEDYQRMLGYQVKDSKVEQQDNFLKRM 570
Query: 505 KSYMRLYAALIQ 516
+RLYAA+IQ
Sbjct: 571 SGMIRLYAAIIQ 582
>UNIPROTKB|E1BT81 [details] [associations]
symbol:GLE1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005643 "nuclear pore" evidence=IEA] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IEA]
InterPro:IPR012476 Pfam:PF07817 GO:GO:0005643 GO:GO:0016973
GeneTree:ENSGT00390000012903 OMA:KEEHRHR PANTHER:PTHR12960
EMBL:AADN02026626 IPI:IPI00599759 Ensembl:ENSGALT00000007546
Uniprot:E1BT81
Length = 697
Score = 129 (50.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 37/118 (31%), Positives = 58/118 (49%)
Query: 407 PQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQVMDILLGEFHR 458
PQ + + ++K V + E + VA + I LV S + P+V D+ L HR
Sbjct: 469 PQGLDFVYYKLAEKFVKQGE---EEVASHRESAFPIALVISGIWEMHPRVGDLFLAHLHR 525
Query: 459 ACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
C Y+VP + Y + +GY +D K+E +++L R+ +RLYAALIQ
Sbjct: 526 VCPYSVPFY--PAYKEGASMEEYQRMLGYLVQDSKMEEEDHFLKRMSGLIRLYAALIQ 581
Score = 44 (20.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 14/81 (17%), Positives = 35/81 (43%)
Query: 323 RSDGTKKLQSAVRATESALNIEQKRL-QKLKELDEENQSLKLSSNEDFSGYEKDISRLIR 381
R G ++L+ E + ++LK DE + L ++ + + + ++
Sbjct: 140 RMKGRERLRQRQEQQEQLVRAAYDMAREQLKRFDEMKE---LKRRQEIQELREVMEKSLK 196
Query: 382 QIRGLKDNVRTKASELVKILN 402
+ +G ++ ++ + KILN
Sbjct: 197 ETQGQQEKLKEEHRHRAKILN 217
Score = 41 (19.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 328 KKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNED 368
+KL+ R LN++ + ++ ++ EE + L+ ++
Sbjct: 203 EKLKEEHRHRAKILNLKLREAEQQRQRQEEQERLRREEGQE 243
Score = 38 (18.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 318 QSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQS 360
+ RG S +++ +AV E EQ++ QK +EL ++ Q+
Sbjct: 317 EMRGLISRMQQEIAAAVE--EKKRRDEQEKKQKQEELLKKQQA 357
>DICTYBASE|DDB_G0267918 [details] [associations]
symbol:DDB_G0267918 "Nucleoporin GLE1" species:44689
"Dictyostelium discoideum" [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR012476 Pfam:PF07817 dictyBase:DDB_G0267918
GO:GO:0005737 GenomeReviews:CM000150_GR GO:GO:0015031 GO:GO:0005643
EMBL:AAFI02000003 GO:GO:0016973 eggNOG:NOG330485 PANTHER:PTHR12960
RefSeq:XP_647416.1 ProteinModelPortal:Q55FW7
EnsemblProtists:DDB0189646 GeneID:8616223 KEGG:ddi:DDB_G0267918
OMA:RACEDER Uniprot:Q55FW7
Length = 837
Score = 118 (46.6 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 44/178 (24%), Positives = 77/178 (43%)
Query: 351 LKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSI 410
+K ++E+ L E K I+ I QI ++ V K ++L+K + + +
Sbjct: 525 IKFINEKKSMLSREMVEFERQNSKLINIAINQISASQEQVNEKTNKLIKSIQDSQQSDYL 584
Query: 411 SLATFS---KKVVSRCE---TPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTV 464
+T KK +S+ E T + + V+V V + P+++D LL + C YTV
Sbjct: 585 KKSTILSIVKKSLSQVESQITFHNASSFPLALVLVRVGEKYPELIDCLLASLNEKCCYTV 644
Query: 465 PKHIVXXXXXXXXXXXYYKTIGYR-------EEDGKIESLENYLSRLKSYMRLYAALI 515
P ++ K +GY + D IE+ + + R+ Y+ LY ALI
Sbjct: 645 PYYVSPKENESQSSIS--KRMGYAFSNDIVGDNDKPIETEDEFHKRICGYLSLYCALI 700
Score = 55 (24.4 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 25/117 (21%), Positives = 44/117 (37%)
Query: 143 HQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVXXXXXXXXXXXXXXXTVYQRKIAE 202
HQ +L + N ++ LE Q E ++ N L + Y++K E
Sbjct: 326 HQSELSESLSLLNQLNKLEQQ---EIDRHNEELLKYELAIKEEKRKQQQLIERYEQKKRE 382
Query: 203 ALDNHLTAVQRDHELKSQIEERKIRSDXXXXXXXXXXXXLQEEKIRQEKVKAEAEMQ 259
L Q++ + K + EE++ L +EK +EK + E + Q
Sbjct: 383 EKQRQLQQEQKEKQEKLEKEEKEKEQQEQQKQLLIK---LAKEKEEKEKFEKEQQQQ 436
Score = 38 (18.4 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 344 EQKRLQKLKELDEENQSLKLSSNE 367
EQ++ QK KEL +E + L+ E
Sbjct: 432 EQQQ-QKEKELQKEKELLQQKEKE 454
Score = 37 (18.1 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 344 EQKRLQKLKELDEENQSLK 362
++K LQK KEL ++ + K
Sbjct: 437 KEKELQKEKELLQQKEKEK 455
>RGD|1565693 [details] [associations]
symbol:RGD1565693 "similar to GLE1-like, RNA export mediator
isoform 1" species:10116 "Rattus norvegicus" [GO:0005643 "nuclear
pore" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] InterPro:IPR012476 Pfam:PF07817 RGD:1565693
GO:GO:0005643 GO:GO:0016973 GeneTree:ENSGT00390000012903
PANTHER:PTHR12960 IPI:IPI00564822 Ensembl:ENSRNOT00000016884
Uniprot:F1M6G0
Length = 698
Score = 126 (49.4 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 36/120 (30%), Positives = 59/120 (49%)
Query: 405 LCPQSISLATF--SKKVVSRCETPDDNVAM--SCGYVIVLVASQV----PQVMDILLGEF 456
L PQ + + ++K+V + E+ VA + I VAS + P+V D++L +
Sbjct: 468 LHPQGLDFVQYKVAEKLVKQGES---EVASHPEAAFPIAAVASGIWMLHPRVGDLILAQL 524
Query: 457 HRACIYTVPKHIVXXXXXXXXXXXYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
HR C Y+VP H Y + +GY K+E +++L R+ +R YAA+IQ
Sbjct: 525 HRQCPYSVPFH--PAFKEGMALEDYGRMLGYPVTHSKVEEQDHFLKRMSGMIRFYAAIIQ 582
Score = 37 (18.1 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 148 GVKEEIRNLISTLETQLISENEQSNSALAQV 178
G +E+R+L+ LE ++ E A++
Sbjct: 314 GALQEMRDLLFHLEQEISRATEMKEEEEARI 344
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 537 462 0.00096 118 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 604 (64 KB)
Total size of DFA: 236 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.07u 0.10s 42.17t Elapsed: 00:00:02
Total cpu time: 42.07u 0.10s 42.17t Elapsed: 00:00:02
Start: Mon May 20 20:25:11 2013 End: Mon May 20 20:25:13 2013