BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009317
         (537 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
           The Inhibitor Y27632
          Length = 402

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 316 GAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKD 375
           GA   G+ +   +KL++ +R   S +N+E   L  L  L  +     L  N++   +   
Sbjct: 1   GASGDGAGASRQRKLEALIRDPRSPINVES-LLDGLNSLVLDLDFPALRKNKNIDNFLNR 59

Query: 376 ISRLIRQIRGLKDNVRTKASELVKIL 401
             +++++IRGL+  ++ +  ++VK++
Sbjct: 60  YEKIVKKIRGLQ--MKAEDYDVVKVI 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,623,794
Number of Sequences: 62578
Number of extensions: 371064
Number of successful extensions: 715
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 9
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)