BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009317
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAS2|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1
Length = 698
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 436 YVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED 491
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+ +D
Sbjct: 500 FPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVKD 557
Query: 492 GKIESLENYLSRLKSYMRLYAALIQ 516
K+E +N+L R+ +RLYAA+IQ
Sbjct: 558 SKVEQQDNFLKRMSGMIRLYAAIIQ 582
>sp|Q53GS7|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2
Length = 698
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVK 556
Query: 491 DGKIESLENYLSRLKSYMRLYAALIQ 516
D K+E +N+L R+ +RLYAA+IQ
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQ 582
>sp|Q8R322|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2
Length = 699
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 405 LCPQSISLATF--SKKVVSRCETPDDNVA--MSCGYVIVLVASQV----PQVMDILLGEF 456
L PQ + + ++K V + E + VA + I +VAS + P+V D++L
Sbjct: 469 LNPQGLDFVQYKLAEKFVKQGE---EEVASHHEAAFPIAVVASGIWMLHPKVGDLILAHL 525
Query: 457 HRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
H+ C Y+VP + F E + E Y + +GY+ D K+E +N+L R+ +RLYAA+IQ
Sbjct: 526 HKKCPYSVPFYPAFKEGM--ALEDYQRMLGYQVTDSKVEQQDNFLKRMSGMIRLYAAIIQ 583
>sp|Q6DRB1|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2
Length = 695
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 407 PQSISLATF--SKKVVSRCE---TPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACI 461
PQ + A++ ++K V + E + + A G V + P++ D++L H+ C
Sbjct: 490 PQGLEFASYRLAEKFVKQGEEEVASNHSAAFPIGAVASGIWELHPKIGDLILAHLHKKCP 549
Query: 462 YTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
Y VP + S E Y K +GYR ++GK+E +++L R+ +RLYAA+IQ
Sbjct: 550 YAVPHYPPMESGT--SVEDYQKILGYRVDEGKVEGQDSFLKRMSGMIRLYAAIIQ 602
>sp|Q4KLN4|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1
Length = 698
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
+ I +VAS + P+V D++L H+ C Y+VP + F E E Y + +GY+
Sbjct: 499 AFPIAVVASGIWMLHPKVGDLILAHLHKKCPYSVPFYPAFKEGM--PLEDYQRMLGYQVT 556
Query: 491 DGKIESLENYLSRLKSYMRLYAALIQ 516
D K+E +N+L R+ +RLYAA+IQ
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQ 582
>sp|Q3ZBK7|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1
Length = 698
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
+ I +VAS + P+V ++L H+ C Y+VP + F E + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGALILAHLHKKCPYSVPFYPAFKEGM--ALEDYQRMLGYQVK 556
Query: 491 DGKIESLENYLSRLKSYMRLYAALIQ 516
D K+E +N+L R+ +RLYAA+IQ
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQ 582
>sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1
Length = 677
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 398 VKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLG 454
+ I ++PL + + +KK VS+ ET + A VI+ +P + L
Sbjct: 448 ITINDHPLA-RDYCMLLMAKKFVSQTETAICSNPQAAFPFASVIITFWKLLPDFGKVFLA 506
Query: 455 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED-GKIESLENYLSRLKSYMRLYAA 513
++ + VP V + ++ E Y KTIGYR D ++E + YL R RLYAA
Sbjct: 507 YMYKESPFLVP--YVIPQQQGQTPEQYLKTIGYRLTDKNELEKPDIYLKRQTGLARLYAA 564
Query: 514 LIQCMTKNA-----CFGRRKFRVSRTHM 536
+I + A CF + + HM
Sbjct: 565 VIISQGRKAAGPDECFELNEGWLWLAHM 592
>sp|Q8CDI7|CC150_MOUSE Coiled-coil domain-containing protein 150 OS=Mus musculus
GN=Ccdc150 PE=2 SV=2
Length = 1110
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 20/122 (16%)
Query: 170 QSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSD 229
Q S + ++K D+ RE +RK +A +L+ A+Q + L+S++ D
Sbjct: 764 QHGSEIEPLQKSLDITREDNRK--------LAMSLEQ---ALQTNGHLQSKL-------D 805
Query: 230 AAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAE--EAKRAALEAEKRAAKEAAEREA 287
E+ + KER Q + +E+V E++++A+L AE EA R + E+ AK+A++RE
Sbjct: 806 HLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREV 865
Query: 288 AE 289
+E
Sbjct: 866 SE 867
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,991,235
Number of Sequences: 539616
Number of extensions: 6894857
Number of successful extensions: 52708
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 2782
Number of HSP's that attempted gapping in prelim test: 36499
Number of HSP's gapped (non-prelim): 9453
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)