Query 009317
Match_columns 537
No_of_seqs 142 out of 179
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 23:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2412 Nuclear-export-signal 100.0 8.5E-84 1.8E-88 680.6 30.8 481 1-537 1-513 (591)
2 PF07817 GLE1: GLE1-like prote 100.0 2.5E-49 5.4E-54 391.8 10.8 187 349-537 3-214 (256)
3 KOG2412 Nuclear-export-signal 97.1 0.0066 1.4E-07 67.2 12.9 85 213-299 216-300 (591)
4 PTZ00121 MAEBL; Provisional 96.8 0.079 1.7E-06 64.4 19.4 23 502-524 1798-1820(2084)
5 KOG0163 Myosin class VI heavy 95.7 0.11 2.4E-06 60.0 12.2 50 228-277 930-980 (1259)
6 KOG1029 Endocytic adaptor prot 95.6 0.59 1.3E-05 54.4 17.7 38 148-189 324-361 (1118)
7 PRK09510 tolA cell envelope in 95.4 2.4 5.2E-05 46.1 20.8 22 161-182 89-110 (387)
8 COG3064 TolA Membrane protein 94.7 3.6 7.8E-05 43.9 18.9 16 187-203 122-137 (387)
9 COG3064 TolA Membrane protein 94.3 7.5 0.00016 41.6 20.2 14 243-256 198-211 (387)
10 PTZ00266 NIMA-related protein 94.0 0.67 1.5E-05 55.6 13.5 10 25-34 227-236 (1021)
11 PRK09510 tolA cell envelope in 93.4 5.3 0.00012 43.5 17.7 24 442-466 346-369 (387)
12 KOG0163 Myosin class VI heavy 93.2 3.9 8.4E-05 48.0 17.0 16 364-379 1067-1082(1259)
13 TIGR02794 tolA_full TolA prote 92.8 11 0.00025 40.2 19.1 7 341-347 261-267 (346)
14 KOG1029 Endocytic adaptor prot 92.1 2.5 5.4E-05 49.5 13.7 14 365-378 456-469 (1118)
15 PF05262 Borrelia_P83: Borreli 91.2 3.8 8.2E-05 45.8 13.7 51 66-134 47-99 (489)
16 PTZ00266 NIMA-related protein 90.5 4.5 9.7E-05 48.9 14.4 10 498-507 778-787 (1021)
17 PF02854 MIF4G: MIF4G domain; 90.2 0.55 1.2E-05 43.2 5.3 115 374-518 2-117 (209)
18 PF05262 Borrelia_P83: Borreli 86.1 21 0.00046 40.1 15.0 7 71-77 156-162 (489)
19 PF09726 Macoilin: Transmembra 84.2 46 0.001 39.0 17.2 63 334-402 592-657 (697)
20 KOG0742 AAA+-type ATPase [Post 84.0 44 0.00095 37.6 15.9 40 137-176 84-124 (630)
21 KOG4364 Chromatin assembly fac 83.7 29 0.00063 40.5 14.8 23 235-257 309-331 (811)
22 PF05672 MAP7: MAP7 (E-MAP-115 82.3 54 0.0012 32.3 15.9 45 241-285 100-144 (171)
23 KOG2140 Uncharacterized conser 81.9 3.2 6.9E-05 47.1 6.5 164 350-525 140-355 (739)
24 PRK06568 F0F1 ATP synthase sub 81.8 51 0.0011 31.7 15.7 35 182-217 48-82 (154)
25 KOG1144 Translation initiation 81.3 8.6 0.00019 45.4 9.8 74 429-514 561-645 (1064)
26 PRK14475 F0F1 ATP synthase sub 81.0 52 0.0011 31.3 14.7 38 183-221 55-92 (167)
27 KOG3054 Uncharacterized conser 78.9 14 0.00031 38.3 9.6 13 412-424 262-274 (299)
28 KOG2002 TPR-containing nuclear 78.7 48 0.0011 40.2 14.9 14 148-161 773-786 (1018)
29 PRK14471 F0F1 ATP synthase sub 78.3 60 0.0013 30.5 14.8 29 183-212 53-81 (164)
30 PRK13428 F0F1 ATP synthase sub 77.9 83 0.0018 34.7 15.8 32 184-216 47-78 (445)
31 PLN03086 PRLI-interacting fact 76.1 14 0.00031 42.1 9.5 13 333-345 93-105 (567)
32 COG4942 Membrane-bound metallo 74.1 1.5E+02 0.0033 33.0 18.4 23 235-257 224-246 (420)
33 PRK06231 F0F1 ATP synthase sub 73.4 1E+02 0.0022 30.6 14.7 24 183-207 93-116 (205)
34 COG4942 Membrane-bound metallo 73.2 1.6E+02 0.0035 32.8 21.3 12 246-257 203-214 (420)
35 PF09726 Macoilin: Transmembra 72.5 1.2E+02 0.0025 35.8 15.8 25 379-403 588-612 (697)
36 KOG4364 Chromatin assembly fac 70.5 88 0.0019 36.8 13.8 16 66-81 127-142 (811)
37 smart00543 MIF4G Middle domain 69.3 18 0.00039 33.4 7.1 79 374-459 2-80 (200)
38 KOG2891 Surface glycoprotein [ 67.6 58 0.0012 34.8 10.9 24 206-229 268-293 (445)
39 TIGR03321 alt_F1F0_F0_B altern 65.2 1.6E+02 0.0035 29.7 14.8 19 186-205 53-71 (246)
40 PF15236 CCDC66: Coiled-coil d 65.0 1.4E+02 0.0031 29.1 12.3 11 126-136 33-43 (157)
41 PRK14474 F0F1 ATP synthase sub 64.1 1.8E+02 0.0038 29.8 14.8 14 191-204 57-70 (250)
42 PRK00247 putative inner membra 63.6 2.3E+02 0.005 31.6 15.1 8 9-16 125-132 (429)
43 KOG0612 Rho-associated, coiled 59.7 3.4E+02 0.0074 34.2 16.5 14 68-81 353-366 (1317)
44 CHL00118 atpG ATP synthase CF0 59.0 1.6E+02 0.0034 27.7 14.6 23 184-207 68-90 (156)
45 KOG3054 Uncharacterized conser 58.0 62 0.0014 33.9 8.9 18 264-281 158-175 (299)
46 KOG1144 Translation initiation 56.7 41 0.00089 40.1 8.2 22 206-227 214-235 (1064)
47 PRK14472 F0F1 ATP synthase sub 52.6 2.1E+02 0.0046 27.2 14.8 15 191-205 70-84 (175)
48 COG5269 ZUO1 Ribosome-associat 51.2 1.6E+02 0.0035 31.5 10.8 15 411-425 356-370 (379)
49 PRK07352 F0F1 ATP synthase sub 50.9 2.3E+02 0.0049 27.0 14.8 27 183-210 64-90 (174)
50 PF06637 PV-1: PV-1 protein (P 50.3 2.6E+02 0.0055 31.2 12.4 15 335-349 412-426 (442)
51 PF12037 DUF3523: Domain of un 48.6 3.6E+02 0.0077 28.6 19.0 9 138-146 41-49 (276)
52 PRK13460 F0F1 ATP synthase sub 47.8 2.6E+02 0.0055 26.7 14.8 22 184-206 62-83 (173)
53 CHL00019 atpF ATP synthase CF0 47.2 2.7E+02 0.0058 26.8 14.8 19 186-205 72-90 (184)
54 KOG3540 Beta amyloid precursor 46.6 32 0.00069 38.9 5.2 20 108-127 220-239 (615)
55 PF06936 Selenoprotein_S: Sele 46.4 81 0.0018 31.4 7.5 7 232-238 85-91 (190)
56 KOG4715 SWI/SNF-related matrix 43.5 2E+02 0.0042 31.4 10.1 69 207-281 243-316 (410)
57 KOG0336 ATP-dependent RNA heli 42.5 24 0.00052 39.5 3.4 33 21-53 215-249 (629)
58 PLN03086 PRLI-interacting fact 42.2 1.7E+02 0.0036 33.8 10.1 9 249-257 22-30 (567)
59 PF07046 CRA_rpt: Cytoplasmic 41.2 1.1E+02 0.0023 23.9 5.7 16 261-276 11-26 (42)
60 PRK13454 F0F1 ATP synthase sub 39.1 3.7E+02 0.008 26.0 12.7 23 183-206 76-98 (181)
61 KOG2002 TPR-containing nuclear 39.0 6.5E+02 0.014 31.2 14.4 25 186-210 773-797 (1018)
62 PRK13453 F0F1 ATP synthase sub 38.9 3.6E+02 0.0077 25.8 14.8 20 185-205 65-84 (173)
63 PF04747 DUF612: Protein of un 37.9 6.3E+02 0.014 28.4 14.3 41 212-252 83-124 (510)
64 PF07946 DUF1682: Protein of u 37.4 1E+02 0.0022 32.5 7.0 29 174-202 284-312 (321)
65 PTZ00491 major vault protein; 37.1 4E+02 0.0086 32.4 12.3 28 212-239 674-701 (850)
66 PRK02292 V-type ATP synthase s 36.3 3.9E+02 0.0085 25.5 10.8 20 486-505 150-171 (188)
67 cd06398 PB1_Joka2 The PB1 doma 36.3 47 0.001 29.2 3.7 35 22-81 22-56 (91)
68 KOG4661 Hsp27-ERE-TATA-binding 35.8 1.8E+02 0.0038 34.0 8.8 32 477-510 882-913 (940)
69 TIGR03738 PRTRC_C PRTRC system 35.7 24 0.00051 29.9 1.7 18 15-32 12-30 (66)
70 COG2268 Uncharacterized protei 35.3 7.7E+02 0.017 28.6 18.6 15 135-149 268-282 (548)
71 TIGR01069 mutS2 MutS2 family p 35.2 2.8E+02 0.0061 33.0 10.8 10 459-468 746-755 (771)
72 PRK06569 F0F1 ATP synthase sub 34.8 4.2E+02 0.0092 25.7 10.2 67 197-268 36-103 (155)
73 PF13904 DUF4207: Domain of un 34.6 5.3E+02 0.012 26.6 15.5 22 233-254 180-201 (264)
74 TIGR03319 YmdA_YtgF conserved 34.3 7.4E+02 0.016 28.1 17.1 20 492-511 427-446 (514)
75 PRK12704 phosphodiesterase; Pr 32.1 8.1E+02 0.017 27.9 17.1 18 494-511 435-452 (520)
76 KOG0979 Structural maintenance 31.8 1.1E+03 0.024 29.5 17.3 29 332-360 853-881 (1072)
77 PF14454 Prok_Ub: Prokaryotic 31.2 31 0.00068 28.9 1.7 20 15-34 13-33 (65)
78 PF15236 CCDC66: Coiled-coil d 31.2 5.1E+02 0.011 25.3 14.0 24 189-212 52-75 (157)
79 PRK00409 recombination and DNA 31.2 3.6E+02 0.0077 32.2 10.8 9 413-421 723-731 (782)
80 COG5269 ZUO1 Ribosome-associat 31.1 6.4E+02 0.014 27.2 11.4 9 210-218 225-233 (379)
81 TIGR03825 FliH_bacil flagellar 31.0 5.8E+02 0.013 25.9 14.7 72 332-403 178-250 (255)
82 PRK14473 F0F1 ATP synthase sub 30.9 4.5E+02 0.0098 24.6 14.8 19 185-204 55-73 (164)
83 PRK09173 F0F1 ATP synthase sub 30.3 4.6E+02 0.0099 24.5 14.5 26 184-210 48-73 (159)
84 PF06936 Selenoprotein_S: Sele 29.3 4.2E+02 0.0092 26.5 9.4 13 234-246 102-114 (190)
85 PF11208 DUF2992: Protein of u 29.0 2.3E+02 0.005 26.7 7.2 11 209-219 89-99 (132)
86 KOG2891 Surface glycoprotein [ 28.5 7.8E+02 0.017 26.6 13.3 8 127-134 229-236 (445)
87 PF12297 EVC2_like: Ellis van 27.9 9.2E+02 0.02 27.2 17.8 50 148-202 195-244 (429)
88 KOG2072 Translation initiation 27.8 1.2E+03 0.027 28.7 19.6 43 150-192 679-722 (988)
89 PRK09174 F0F1 ATP synthase sub 27.1 6.4E+02 0.014 25.1 14.7 26 184-210 99-124 (204)
90 PF03115 Astro_capsid: Astrovi 26.7 21 0.00046 42.2 0.0 10 107-116 694-703 (787)
91 KOG3654 Uncharacterized CH dom 26.6 2.9E+02 0.0062 31.9 8.5 39 321-359 483-526 (708)
92 PF07046 CRA_rpt: Cytoplasmic 26.2 2.2E+02 0.0047 22.2 5.2 11 271-281 27-37 (42)
93 PF07271 Cytadhesin_P30: Cytad 26.2 90 0.002 32.9 4.3 18 235-252 95-112 (279)
94 PRK07353 F0F1 ATP synthase sub 26.0 4.9E+02 0.011 23.5 14.7 100 169-277 36-135 (140)
95 PRK12705 hypothetical protein; 25.7 1.1E+03 0.023 27.2 16.2 13 494-506 423-435 (508)
96 KOG3915 Transcription regulato 24.9 1.9E+02 0.0042 32.9 6.7 20 191-210 534-553 (641)
97 PF12037 DUF3523: Domain of un 24.8 8.6E+02 0.019 25.9 20.7 26 136-161 51-76 (276)
98 PF02731 SKIP_SNW: SKIP/SNW do 24.6 2.9E+02 0.0063 27.1 7.2 12 239-250 139-150 (158)
99 PRK11637 AmiB activator; Provi 24.6 9.3E+02 0.02 26.1 21.3 12 186-197 124-135 (428)
100 KOG0161 Myosin class II heavy 24.5 1.8E+03 0.04 29.6 23.9 108 126-238 1270-1383(1930)
101 KOG4691 Uncharacterized conser 24.2 7.9E+02 0.017 25.2 12.2 35 138-177 61-95 (227)
102 PRK05759 F0F1 ATP synthase sub 21.8 6.3E+02 0.014 23.2 14.8 13 191-203 56-68 (156)
103 KOG4722 Zn-finger protein [Gen 21.3 1.3E+03 0.027 26.5 14.6 16 266-281 427-442 (672)
104 PF00922 Phosphoprotein: Vesic 21.3 65 0.0014 34.0 2.2 24 26-51 12-35 (283)
105 KOG2735 Phosphatidylserine syn 21.1 1.1E+02 0.0023 34.2 3.8 38 496-533 88-127 (466)
106 KOG4661 Hsp27-ERE-TATA-binding 21.1 1.2E+03 0.026 27.7 12.0 15 213-227 621-635 (940)
107 PF11002 RDM: RFPL defining mo 20.8 33 0.00071 26.7 0.0 26 20-45 7-32 (42)
108 PRK13455 F0F1 ATP synthase sub 20.6 7.6E+02 0.016 23.7 13.3 20 184-204 73-92 (184)
109 PHA02664 hypothetical protein; 20.6 93 0.002 33.9 3.2 43 2-45 348-402 (534)
110 PF10446 DUF2457: Protein of u 20.5 66 0.0014 36.0 2.2 14 500-513 428-441 (458)
No 1
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=100.00 E-value=8.5e-84 Score=680.57 Aligned_cols=481 Identities=35% Similarity=0.492 Sum_probs=414.1
Q ss_pred CCccccccCCCCccCccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCccccccCccccccCccccccccceEEEecCcc
Q 009317 1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE 79 (537)
Q Consensus 1 m~~~~~e~~cp~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~ 79 (537)
|| +.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+ .++++..|||.|++++
T Consensus 1 e~-~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~-------d~~~~~~~~~~~~e~e 72 (591)
T KOG2412|consen 1 EG-IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVR-------DGRRGGGFVMHVSEDE 72 (591)
T ss_pred CC-CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHH-------hhhccCCccchhHHHH
Confidence 56 789999999999999999999999999999999999999999 99999987766 5678999999999999
Q ss_pred ccccc-----ccccccccccccccccceecccccccCCCCCccccccCCcc-chhccccchhhhHHHHhhhcccccHHHH
Q 009317 80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI 153 (537)
Q Consensus 80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~ls~~~~~d~~~~~~~~~-~lm~k~~~~~~~l~e~~~~~~~~~~e~~ 153 (537)
++.+. +...++.+++.+++|++|+|+.||++|.++++ +++++ +.|+++++..+. .++|++.+..++
T Consensus 73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~ 144 (591)
T KOG2412|consen 73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI 144 (591)
T ss_pred HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence 97555 55678889999999999999999999988776 77788 888999999888 599999999999
Q ss_pred HHHHHHHHHHHhh-hhHHhhHHHHhhHHhHHhHHHhhhhhcHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHH
Q 009317 154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY 232 (537)
Q Consensus 154 r~~~~~le~~~~~-e~q~~~~~~~~~~k~~~~r~E~~r~~d~~~qr~iae~~d~~~~~~qrd~e~ksqieer~ir~~aa~ 232 (537)
|+++..+.....+ ++...++.+..++++-++|.|+.+++ .++|+.++..+|+|++.++|.++..+||.+|+++++++.
T Consensus 145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr 223 (591)
T KOG2412|consen 145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR 223 (591)
T ss_pred hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999998877666 77878999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhcccccCCcC
Q 009317 233 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEA--------AEREAAENSKRITAGVSQDGAC 304 (537)
Q Consensus 233 eEA~rke~a~qeek~rqekak~eae~~a~~~a~e~~kaa~ea~~k~a~e~--------~~~e~~~~~~~~~~~~~~~~~~ 304 (537)
+||.|++++.|||..+++...++++++++.|++|+++ |.++|++.++ ++.+.+....+.+.
T Consensus 224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekq---eee~ke~e~~~~k~~q~~~~~eek~a~qk~~~-------- 292 (591)
T KOG2412|consen 224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQ---EEERKEAEEQAEKEVQDPKAHEEKLAEQKAVI-------- 292 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCchhcccccccccccc--------
Confidence 9999999999999999999999999999999988772 2222222221 12222211111111
Q ss_pred CCCCCCcccccccccCCCCCCcccccchhhhcchHHHHHHHHHHHHHHHHHHHhhhcccCcccccccchhhhhhhccccc
Q 009317 305 GRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIR 384 (537)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sALe~~~er~kkLKel~~~~~~lks~lkk~~kk~rRqI~k~IGQLS 384 (537)
|++.-.+..|-..--++...++.+.+....-+.++..++++++. +++|.||+.|||||
T Consensus 293 -----------~~~~~~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~-----------~~kr~in~~~~qis 350 (591)
T KOG2412|consen 293 -----------EKVTTSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQ-----------SLKRAINPPFSQIS 350 (591)
T ss_pred -----------ccccCCchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHHhhcCCChhhhh
Confidence 11111111122222223578889999999999998888877654 68899999999999
Q ss_pred Cchhh-HHHHHHHHHHHhcCCC---ch--HHHHHHHHHHHHHhhhcC---CCCCccchHHHHHHHHHhcCccHHHHHHHH
Q 009317 385 GLKDN-VRTKASELVKILNNPL---CP--QSISLATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLGE 455 (537)
Q Consensus 385 ~s~~q-I~~ks~eL~~LL~~~q---~P--~~f~Ln~LAKkIVsQaEt---e~~~sAfPLA~Vav~L~s~~Pef~DILLAr 455 (537)
++++| |.++++.|..++++.+ .| +.||+|+|||++|+|+|+ .+|.+|||||+|++.||++||+|+|+|||+
T Consensus 351 ~~~~q~L~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~ 430 (591)
T KOG2412|consen 351 KSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLAR 430 (591)
T ss_pred hccHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHH
Confidence 99987 9999999999999863 34 478999999999999999 468999999999999999999999999999
Q ss_pred hhhhceeecccccccccccccCHHHHHHHcCccc-cCCccccHHHHHHHHHHHHHHHHHHHHccCC------CCccCcch
Q 009317 456 FHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQCMTK------NACFGRRK 528 (537)
Q Consensus 456 f~k~CPylVP~~~~~~k~~gqStEeyrK~LGYr~-~dG~~Esed~YlkRMtGI~rLYAAIiQt~~~------~~Pygi~~ 528 (537)
|||+|||+|||||+. ++|+|++.|||+. ++|+||..|.|++||+||++|||||+|+++| -||||+.+
T Consensus 431 l~KkCP~~VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~ 504 (591)
T KOG2412|consen 431 LHKKCPYVVPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINH 504 (591)
T ss_pred HHhcCCccccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhc
Confidence 999999999999984 5999999999997 6789999999999999999999999999983 48999999
Q ss_pred hhhhhcccC
Q 009317 529 FRVSRTHMA 537 (537)
Q Consensus 529 ~W~wLARi~ 537 (537)
+|.|||||+
T Consensus 505 gW~wLA~il 513 (591)
T KOG2412|consen 505 GWAWLARIL 513 (591)
T ss_pred ccHHHHHHh
Confidence 999999984
No 2
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT). This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.
Probab=100.00 E-value=2.5e-49 Score=391.82 Aligned_cols=187 Identities=28% Similarity=0.383 Sum_probs=145.2
Q ss_pred HHHHHHHHHhhhc---ccCcccccccchhhhhhhcccccCchhhHHHHHHHHHHHhcCC--------------CchHHHH
Q 009317 349 QKLKELDEENQSL---KLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP--------------LCPQSIS 411 (537)
Q Consensus 349 kkLKel~~~~~~l---ks~lkk~~kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~--------------q~P~~f~ 411 (537)
++++++++.+... ++.+++.+.+++|+|+++|||||++.+||.+++++|.++|++. ++++.|+
T Consensus 3 ~~i~~~k~~~~~~~~~d~~lKk~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 82 (256)
T PF07817_consen 3 QKIKQIKQALKEPVKSDPSLKKLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYL 82 (256)
T ss_dssp HHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHH
Confidence 4566667676654 3467777789999999999999999999999999999996552 2345789
Q ss_pred HHHHHHHHHhhhcCC---CCCccchHHHHHHHHHhcCccHHHHHHHHhhhhceeecccccccccccccCHHHHHHHcCcc
Q 009317 412 LATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYR 488 (537)
Q Consensus 412 Ln~LAKkIVsQaEte---~~~sAfPLA~Vav~L~s~~Pef~DILLArf~k~CPylVP~~~~~~k~~gqStEeyrK~LGYr 488 (537)
||+|||+||+|+|++ +|++|||||+|++.||+.||+|+|+||||||++|||+||+|++.. .++++++|+++|||+
T Consensus 83 l~~lAk~iv~Q~e~ev~~~~~~A~PlA~v~~~l~~~~p~~~dillA~l~k~Cp~~vP~~~~~~--~~~~~e~~~k~lGyk 160 (256)
T PF07817_consen 83 LNFLAKKIVSQAETEVSANPESAFPLARVAVQLWSQHPEFGDILLARLHKKCPYLVPKYPGFT--CDQSTEEYRKRLGYK 160 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHSTCHHHHHHHHHHHH-GGGG----T-------SSHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHcCCcHHHHHHHHHHHcCceeEeecCccc--CCCCHHHHHHHcCCc
Confidence 999999999999994 689999999999999999999999999999999999999999863 478999999999999
Q ss_pred ccCCccccHHHHHHHHHHHHHHHHHHHHccCCC-----CccCcchhhhhhcccC
Q 009317 489 EEDGKIESLENYLSRLKSYMRLYAALIQCMTKN-----ACFGRRKFRVSRTHMA 537 (537)
Q Consensus 489 ~~dG~~Esed~YlkRMtGI~rLYAAIiQt~~~~-----~Pygi~~~W~wLARi~ 537 (537)
+++|+||++++|++||+||++|||||+|++++. ||||++++|+|||||+
T Consensus 161 ~~~~~~E~~~~y~~Rm~Gi~~lyaAi~~~~~~~~~~~~~p~~~~~~W~wlAr~l 214 (256)
T PF07817_consen 161 RDDGGWESEDQYLKRMTGIIRLYAAIIQTPPPKGQKTSNPHGLEHGWRWLARIL 214 (256)
T ss_dssp B-TTSB--HHHHHHHHHHHHHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHH
T ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCCcHHHHHHHHHHh
Confidence 977779999999999999999999999999843 7999999999999983
No 3
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.07 E-value=0.0066 Score=67.20 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009317 213 RDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSK 292 (537)
Q Consensus 213 rd~e~ksqieer~ir~~aa~eEA~rke~a~qeek~rqekak~eae~~a~~~a~e~~kaa~ea~~k~a~e~~~~e~~~~~~ 292 (537)
+..+.++++|.++ +..+.+|++|+..-++.++..||+.|++.+++.-++++.+..++.++.-.++.|...++.+.+..
T Consensus 216 ~~~~e~kr~Eaer--k~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ke~e~~~~k~~q~~~~~eek~a~qk~~~~ 293 (591)
T KOG2412|consen 216 KERSEEKREEAER--KRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEKLAEQKAVIE 293 (591)
T ss_pred HHHHHhhhhhhHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccccccccccccc
Confidence 3444555555554 44455777777778888888889988887753333333333444444445677778888887777
Q ss_pred hhhcccc
Q 009317 293 RITAGVS 299 (537)
Q Consensus 293 ~~~~~~~ 299 (537)
+++....
T Consensus 294 ~~~~~~~ 300 (591)
T KOG2412|consen 294 KVTTSSA 300 (591)
T ss_pred cccCCch
Confidence 6665444
No 4
>PTZ00121 MAEBL; Provisional
Probab=96.80 E-value=0.079 Score=64.39 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHccCCCCcc
Q 009317 502 SRLKSYMRLYAALIQCMTKNACF 524 (537)
Q Consensus 502 kRMtGI~rLYAAIiQt~~~~~Py 524 (537)
++|...+.-|.||+.....++++
T Consensus 1798 QqV~dEVdkY~AIIeqrIQqNLl 1820 (2084)
T PTZ00121 1798 KKIKDIFDNFANIIEGGKEGNLV 1820 (2084)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 44566666666666554444444
No 5
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.68 E-value=0.11 Score=60.00 Aligned_cols=50 Identities=38% Similarity=0.502 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 009317 228 SDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAK-RAALEAEKR 277 (537)
Q Consensus 228 ~~aa~eEA~rke~a~qeek~rqekak~eae~~a~~~a~e~~-kaa~ea~~k 277 (537)
++.|.-|-+|+|-..++..+-.|+.++++||++++++||++ ++..|.+.+
T Consensus 930 qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~ 980 (1259)
T KOG0163|consen 930 QELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERR 980 (1259)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 57777777788878888888889999999999999998766 444443333
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.59 Score=54.38 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHHHHHhhhhHHhhHHHHhhHHhHHhHHHhh
Q 009317 148 GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMD 189 (537)
Q Consensus 148 ~~~e~~r~~~~~le~~~~~e~q~~~~~~~~~~k~~~~r~E~~ 189 (537)
|=+.|+-.++.+|| ++-||+...+++.++..+.|||=+
T Consensus 324 kGqaELerRRq~le----eqqqreree~eqkEreE~ekkere 361 (1118)
T KOG1029|consen 324 KGQAELERRRQALE----EQQQREREEVEQKEREEEEKKERE 361 (1118)
T ss_pred hhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667777888888 445555667777777777777766
No 7
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=95.44 E-value=2.4 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=10.2
Q ss_pred HHHHhhhhHHhhHHHHhhHHhH
Q 009317 161 ETQLISENEQSNSALAQVEKDR 182 (537)
Q Consensus 161 e~~~~~e~q~~~~~~~~~~k~~ 182 (537)
..+++.+....-..|..+++.+
T Consensus 89 aeel~~~~~~eq~rlk~le~er 110 (387)
T PRK09510 89 AEELQQKQAAEQERLKQLEKER 110 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555444
No 8
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=94.72 E-value=3.6 Score=43.92 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=7.8
Q ss_pred HhhhhhcHHHHHHHHHH
Q 009317 187 EMDRKNDTVYQRKIAEA 203 (537)
Q Consensus 187 E~~r~~d~~~qr~iae~ 203 (537)
|++ |+..++|.++.|.
T Consensus 122 Ea~-kq~~~~qkqqeEq 137 (387)
T COG3064 122 EAE-KQAQLEQKQQEEQ 137 (387)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 555 4444455555553
No 9
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=94.33 E-value=7.5 Score=41.61 Aligned_cols=14 Identities=57% Similarity=0.560 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 009317 243 QEEKIRQEKVKAEA 256 (537)
Q Consensus 243 qeek~rqekak~ea 256 (537)
-|.+..-++||.++
T Consensus 198 aEAkaa~ekAk~e~ 211 (387)
T COG3064 198 AEAKAAAEKAKAEA 211 (387)
T ss_pred HHHHHHHHHhhhHH
Confidence 33344444444333
No 10
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=94.05 E-value=0.67 Score=55.60 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=7.1
Q ss_pred CCHHHHHHHH
Q 009317 25 WSFDALLSEL 34 (537)
Q Consensus 25 w~~~~~~~e~ 34 (537)
||||-++-||
T Consensus 227 WSLG~ILYEL 236 (1021)
T PTZ00266 227 WALGCIIYEL 236 (1021)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 11
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=93.35 E-value=5.3 Score=43.48 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=14.8
Q ss_pred HhcCccHHHHHHHHhhhhceeeccc
Q 009317 442 ASQVPQVMDILLGEFHRACIYTVPK 466 (537)
Q Consensus 442 ~s~~Pef~DILLArf~k~CPylVP~ 466 (537)
.+.+|.|-.-.+.- .+.+||..|-
T Consensus 346 sSGd~aldrAA~~A-ar~a~lP~pP 369 (387)
T PRK09510 346 EGGDPALCQAALAA-AKTAKIPKPP 369 (387)
T ss_pred CCCCHHHHHHHHHH-HHcCCCCCCC
Confidence 45667776666665 6667765543
No 12
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=93.21 E-value=3.9 Score=47.99 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=9.8
Q ss_pred Ccccccccchhhhhhh
Q 009317 364 SSNEDFSGYEKDISRL 379 (537)
Q Consensus 364 ~lkk~~kk~rRqI~k~ 379 (537)
-++.++..+|-.||.+
T Consensus 1067 l~~wkyaeLRDtINTS 1082 (1259)
T KOG0163|consen 1067 LSKWKYAELRDTINTS 1082 (1259)
T ss_pred cccccHHHHHHhhccc
Confidence 3555566677777644
No 13
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=92.84 E-value=11 Score=40.18 Aligned_cols=7 Identities=0% Similarity=-0.178 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 009317 341 LNIEQKR 347 (537)
Q Consensus 341 Le~~~er 347 (537)
+..|...
T Consensus 261 v~~Y~a~ 267 (346)
T TIGR02794 261 VDKYAAI 267 (346)
T ss_pred HHHHHHH
Confidence 3444443
No 14
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=2.5 Score=49.50 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=6.8
Q ss_pred cccccccchhhhhh
Q 009317 365 SNEDFSGYEKDISR 378 (537)
Q Consensus 365 lkk~~kk~rRqI~k 378 (537)
+..++-+.|..|+.
T Consensus 456 ls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 456 LSGKLQDVRVDITT 469 (1118)
T ss_pred Hhhhhhhheeccch
Confidence 44444455555543
No 15
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=91.24 E-value=3.8 Score=45.82 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=27.0
Q ss_pred ccccceEEEecCcccccccccccccccccccccccceecccccccCCCCCccccccCC--ccchhccccch
Q 009317 66 SNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGG--ESYLMDEVGLA 134 (537)
Q Consensus 66 ~~~~~fv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ls~~~~~d~~~~~~~--~~~lm~k~~~~ 134 (537)
+.++-||+|+=|... +..|.+|=++|.+..+-||=.+++- .+|||.-.||-
T Consensus 47 ~~~~y~ii~~vd~~~------------------~~~~~ADi~~ig~~a~vdhI~nlrrIiagyl~~aygY~ 99 (489)
T PF05262_consen 47 SYGRYYIIHAVDPEE------------------KKKLDADIFIIGENARVDHINNLRRIIAGYLEAAYGYS 99 (489)
T ss_pred ccCcEEEEEecCccc------------------ccCCCCcEEEEcCCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 448889998865443 2233455555555555554443332 22555555554
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.53 E-value=4.5 Score=48.88 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 009317 498 ENYLSRLKSY 507 (537)
Q Consensus 498 d~YlkRMtGI 507 (537)
+.|.+-|..+
T Consensus 778 ~~~~~~~~~~ 787 (1021)
T PTZ00266 778 EMYKEAVNPI 787 (1021)
T ss_pred HHHhhhccch
Confidence 4555555443
No 17
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=90.18 E-value=0.55 Score=43.15 Aligned_cols=115 Identities=14% Similarity=0.207 Sum_probs=77.4
Q ss_pred hhhhhhcccccCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCc-cHHHHH
Q 009317 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP-QVMDIL 452 (537)
Q Consensus 374 RqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~q~P~~f~Ln~LAKkIVsQaEte~~~sAfPLA~Vav~L~s~~P-ef~DIL 452 (537)
|+|+-.+|+|| .+.+...+.+|.++.... ....+..+++.|+..+... |..+-.+|.++..|-..+| .|+..|
T Consensus 2 r~v~~~lnklt--~~n~~~~~~~l~~~~~~~---~~~~~~~i~~~i~~~a~~~-~~~~~~~a~l~~~l~~~~~~~f~~~l 75 (209)
T PF02854_consen 2 RKVRGILNKLT--PSNFESIIDELIKLNWSD---DPETLKEIVKLIFEKAVEE-PNFSPLYARLCAALNSRFPSEFRSLL 75 (209)
T ss_dssp HHHHHHHHHCS--STTHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHCC--HHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhhhhcC-chHHHHHHHHHHHHhccchhhHHHHH
Confidence 56777788888 445666666666665544 2345667777777766654 4677889999999999999 999999
Q ss_pred HHHhhhhceeecccccccccccccCHHHHHHHcCccccCCccccHHHHHHHHHHHHHHHHHHHHcc
Q 009317 453 LGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCM 518 (537)
Q Consensus 453 LArf~k~CPylVP~~~~~~k~~gqStEeyrK~LGYr~~dG~~Esed~YlkRMtGI~rLYAAIiQt~ 518 (537)
+.+++.. |..+. .. . . .-+....+..|+.|+++++|-+.-..
T Consensus 76 l~~~~~~--f~~~~-~~---~---~---------------~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 76 LNRCQEE--FEERY-SN---E---E---------------LEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHHH--HHHHT--H---H---H---------------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH--HHHhh-hh---h---h---------------HHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 9888765 22221 00 0 0 01223467789999999999887543
No 18
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=86.05 E-value=21 Score=40.12 Aligned_cols=7 Identities=57% Similarity=0.771 Sum_probs=3.3
Q ss_pred eEEEecC
Q 009317 71 FVIRVSD 77 (537)
Q Consensus 71 fv~r~~~ 77 (537)
-|+=+.+
T Consensus 156 I~IPL~~ 162 (489)
T PF05262_consen 156 IVIPLSD 162 (489)
T ss_pred EEEeccc
Confidence 4555543
No 19
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.17 E-value=46 Score=38.98 Aligned_cols=63 Identities=13% Similarity=0.225 Sum_probs=42.9
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhhh---cccCcccccccchhhhhhhcccccCchhhHHHHHHHHHHHhc
Q 009317 334 VRATESALNIEQKRLQKLKELDEENQS---LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILN 402 (537)
Q Consensus 334 ~~~~~sALe~~~er~kkLKel~~~~~~---lks~lkk~~kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~ 402 (537)
+..+.+|+.+.+.++. ..+.. +|..|=.-+|+-||||...-+||..--..|.+--.+|.+++.
T Consensus 592 L~~aL~amqdk~~~LE------~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLE------NSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666655 23333 466677778899999999999998877776555555555554
No 20
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.05 E-value=44 Score=37.63 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=23.0
Q ss_pred hHHHHhhhccc-ccHHHHHHHHHHHHHHHhhhhHHhhHHHH
Q 009317 137 ALVELTHQHQL-GVKEEIRNLISTLETQLISENEQSNSALA 176 (537)
Q Consensus 137 ~l~e~~~~~~~-~~~e~~r~~~~~le~~~~~e~q~~~~~~~ 176 (537)
+|-||.+-.+- .|-+=+|.|-..++.+.+++.+.--+..+
T Consensus 84 Alrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa 124 (630)
T KOG0742|consen 84 ALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQA 124 (630)
T ss_pred HHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777766554 34555666666666666666663333333
No 21
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=83.74 E-value=29 Score=40.52 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009317 235 AKRKERALQEEKIRQEKVKAEAE 257 (537)
Q Consensus 235 A~rke~a~qeek~rqekak~eae 257 (537)
-+++|+..++.|-.||+++...+
T Consensus 309 qkekEkeEKrrKdE~Ek~kKqee 331 (811)
T KOG4364|consen 309 QKEKEKEEKRRKDEQEKLKKQEE 331 (811)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 34445455555555555554444
No 22
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=82.29 E-value=54 Score=32.32 Aligned_cols=45 Identities=33% Similarity=0.368 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009317 241 ALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAER 285 (537)
Q Consensus 241 a~qeek~rqekak~eae~~a~~~a~e~~kaa~ea~~k~a~e~~~~ 285 (537)
..+|+..+..+-|-+|+..|+..|+-.++.--.--.+.-.|+.++
T Consensus 100 ~e~Ee~e~~~kQkeeae~ka~EeAek~r~ErE~~~~q~eqERleR 144 (171)
T PF05672_consen 100 KEQEEQERLQKQKEEAEAKAREEAEKQRKERERIMQQEEQERLER 144 (171)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666655555544333333333333333
No 23
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=81.87 E-value=3.2 Score=47.05 Aligned_cols=164 Identities=16% Similarity=0.249 Sum_probs=103.6
Q ss_pred HHHHHHHHhhhcccC--cccccccchhhhhhhcccccCchhhHHHHHHHHHH--HhcCCCchHHHHHHHHHHHHHh-hhc
Q 009317 350 KLKELDEENQSLKLS--SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVK--ILNNPLCPQSISLATFSKKVVS-RCE 424 (537)
Q Consensus 350 kLKel~~~~~~lks~--lkk~~kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~--LL~~~q~P~~f~Ln~LAKkIVs-QaE 424 (537)
+|+.+.+++.+.++. ....|-.+++.|+..||.++.+ +|..++.+|.+ +|.| -++|++.||. |+-
T Consensus 140 KL~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~s--Ni~~ii~eLfqeNiirg--------Rgl~crsv~~aq~a 209 (739)
T KOG2140|consen 140 KLRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNAS--NIQEIIRELFQENIIRG--------RGLLCRSVMQAQAA 209 (739)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHH--HHHHHHHHHHHHHHHhc--------cchhHHHHHHHHhc
Confidence 555666666665532 4445668999999999887654 56666666654 2222 3556666553 333
Q ss_pred CCCCCccchHHHHHHHHHhcCccHHHHHHHHhhh------------hceeecccccccc-------------------cc
Q 009317 425 TPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHR------------ACIYTVPKHIVFS-------------------EA 473 (537)
Q Consensus 425 te~~~sAfPLA~Vav~L~s~~Pef~DILLArf~k------------~CPylVP~~~~~~-------------------k~ 473 (537)
++ ..--.+|.+++-|-+.||++|.+||-+|.- .|.-++-|..... +-
T Consensus 210 sp--~ft~vyaALvAviNskfP~IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq~VahEIv~Leil~lLLe~P 287 (739)
T KOG2140|consen 210 SP--GFTPVYAALVAVINSKFPQIGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQQVAHEIVALEILTLLLERP 287 (739)
T ss_pred CC--CCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33 355567888888889999999999988742 3444333321100 00
Q ss_pred cccCHH---HHHHHcCcccc-------CCcccc------HHHHHHHHHHHHHHHHHHHHccCCCCccC
Q 009317 474 AFESEE---AYYKTIGYREE-------DGKIES------LENYLSRLKSYMRLYAALIQCMTKNACFG 525 (537)
Q Consensus 474 ~gqStE---eyrK~LGYr~~-------dG~~Es------ed~YlkRMtGI~rLYAAIiQt~~~~~Pyg 525 (537)
.+.|.+ .+.+-.||+.. ||.||. +..-..|+.-++-..++|-+-.+..||-+
T Consensus 288 TddSvevaI~flkecGakL~~VSpr~~n~IfErlR~ILhe~Eld~rvqy~iEtlf~iRkdkfk~~p~v 355 (739)
T KOG2140|consen 288 TDDSVEVAIAFLKECGAKLAEVSPRALNGIFERLRYILHEGELDRRVQYMIETLFQIRKDKFKSHPAV 355 (739)
T ss_pred CCchHHHHHHHHHHHHHHHHHhChHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 022332 56788999752 565653 44567788888888888888888777744
No 24
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=81.77 E-value=51 Score=31.69 Aligned_cols=35 Identities=6% Similarity=0.049 Sum_probs=21.7
Q ss_pred HHhHHHhhhhhcHHHHHHHHHHHhhhhhHHhhhHHH
Q 009317 182 RDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHEL 217 (537)
Q Consensus 182 ~~~r~E~~r~~d~~~qr~iae~~d~~~~~~qrd~e~ 217 (537)
...|.|++ .+..+||..+.++..+.-..+....+.
T Consensus 48 e~~r~eA~-~l~~e~e~~L~~Ar~EA~~Ii~~A~~~ 82 (154)
T PRK06568 48 EKLKEDAA-LLFEQTNAQIKKLETLRSQMIEESNEV 82 (154)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777 777888888877655554444333333
No 25
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=81.29 E-value=8.6 Score=45.42 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=45.9
Q ss_pred CccchHHHHHHHHHhcC-ccHHHHHHHHhhhhceeecccccccccccccCHHHHHHHcCccc-cCCc---------cccH
Q 009317 429 NVAMSCGYVIVLVASQV-PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGK---------IESL 497 (537)
Q Consensus 429 ~sAfPLA~Vav~L~s~~-Pef~DILLArf~k~CPylVP~~~~~~k~~gqStEeyrK~LGYr~-~dG~---------~Ese 497 (537)
.+-.-||.+++.|+... |.-+.-|-=.=.++|||+|..+-. -+..||+. .++. --..
T Consensus 561 sslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKi------------DRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 561 SSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKI------------DRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred ccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhh------------hhhcccccCCCchHHHHHHHhhHHHH
Confidence 34456677777776432 433333332224889999998532 26789985 3332 1235
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009317 498 ENYLSRLKSYMRLYAAL 514 (537)
Q Consensus 498 d~YlkRMtGI~rLYAAI 514 (537)
..|..|+.-|+-=|+-.
T Consensus 629 ~EF~~R~~~ii~efaEQ 645 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQ 645 (1064)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 68999999998777654
No 26
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=80.98 E-value=52 Score=31.25 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=23.9
Q ss_pred HhHHHhhhhhcHHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 009317 183 DMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQI 221 (537)
Q Consensus 183 ~~r~E~~r~~d~~~qr~iae~~d~~~~~~qrd~e~ksqi 221 (537)
..|+|.+ .+..+|+.+++.+..+....+...++.-.++
T Consensus 55 ~~k~eAe-~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~ 92 (167)
T PRK14475 55 RLREEAQ-ALLADVKAEREEAERQAAAMLAAAKADARRM 92 (167)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 6677888888887666655555554444433
No 27
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.94 E-value=14 Score=38.34 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhhc
Q 009317 412 LATFSKKVVSRCE 424 (537)
Q Consensus 412 Ln~LAKkIVsQaE 424 (537)
|+.+||-|-.++-
T Consensus 262 l~AVAkfIkqrGR 274 (299)
T KOG3054|consen 262 LAAVAKFIKQRGR 274 (299)
T ss_pred HHHHHHHHHHcCc
Confidence 7777776655544
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=78.71 E-value=48 Score=40.15 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=7.4
Q ss_pred ccHHHHHHHHHHHH
Q 009317 148 GVKEEIRNLISTLE 161 (537)
Q Consensus 148 ~~~e~~r~~~~~le 161 (537)
+.-|++...+..||
T Consensus 773 ~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELE 786 (1018)
T ss_pred ccHHHHHHHHHHHH
Confidence 44555555555554
No 29
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=78.28 E-value=60 Score=30.47 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=18.3
Q ss_pred HhHHHhhhhhcHHHHHHHHHHHhhhhhHHh
Q 009317 183 DMRREMDRKNDTVYQRKIAEALDNHLTAVQ 212 (537)
Q Consensus 183 ~~r~E~~r~~d~~~qr~iae~~d~~~~~~q 212 (537)
+.+.|++ .+..+|+..++++..+....+.
T Consensus 53 ~~~~ea~-~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14471 53 EARKEMQ-NLQADNERLLKEARAERDAILK 81 (164)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666 6667888888876665544433
No 30
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=77.95 E-value=83 Score=34.74 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=18.3
Q ss_pred hHHHhhhhhcHHHHHHHHHHHhhhhhHHhhhHH
Q 009317 184 MRREMDRKNDTVYQRKIAEALDNHLTAVQRDHE 216 (537)
Q Consensus 184 ~r~E~~r~~d~~~qr~iae~~d~~~~~~qrd~e 216 (537)
++++++ ....+|+..++++..+...-+...++
T Consensus 47 a~~ea~-~~~~~~e~~L~~Ak~ea~~Ii~~A~~ 78 (445)
T PRK13428 47 AADRLA-EADQAHTKAVEDAKAEAARVVEEARE 78 (445)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 56667777777766554444443333
No 31
>PLN03086 PRLI-interacting factor K; Provisional
Probab=76.12 E-value=14 Score=42.13 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=9.8
Q ss_pred hhhcchHHHHHHH
Q 009317 333 AVRATESALNIEQ 345 (537)
Q Consensus 333 ~~~~~~sALe~~~ 345 (537)
++...+|||+.-.
T Consensus 93 KI~LPpSaL~~L~ 105 (567)
T PLN03086 93 KIKLPPSCFTELS 105 (567)
T ss_pred eEEcCHHHHHHHH
Confidence 4888999987543
No 32
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.12 E-value=1.5e+02 Score=33.01 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009317 235 AKRKERALQEEKIRQEKVKAEAE 257 (537)
Q Consensus 235 A~rke~a~qeek~rqekak~eae 257 (537)
-+-++...++..++++-+++|++
T Consensus 224 ~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 224 KKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 33445555666667777666655
No 33
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=73.38 E-value=1e+02 Score=30.61 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=14.4
Q ss_pred HhHHHhhhhhcHHHHHHHHHHHhhh
Q 009317 183 DMRREMDRKNDTVYQRKIAEALDNH 207 (537)
Q Consensus 183 ~~r~E~~r~~d~~~qr~iae~~d~~ 207 (537)
+.|.|++ .+-.+|+.+++++..+.
T Consensus 93 ~~~~eA~-~~l~e~e~~L~~A~~eA 116 (205)
T PRK06231 93 ELKQQAQ-QLLENAKQRHENALAQA 116 (205)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3445555 55567777777765443
No 34
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.21 E-value=1.6e+02 Score=32.85 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 009317 246 KIRQEKVKAEAE 257 (537)
Q Consensus 246 k~rqekak~eae 257 (537)
+.++|+.|.+++
T Consensus 203 ~~~~E~kk~~~~ 214 (420)
T COG4942 203 QLLEERKKTLAQ 214 (420)
T ss_pred HHHHHHHHHHHH
Confidence 344455544443
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.45 E-value=1.2e+02 Score=35.80 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=17.5
Q ss_pred hcccccCchhhHHHHHHHHHHHhcC
Q 009317 379 LIRQIRGLKDNVRTKASELVKILNN 403 (537)
Q Consensus 379 ~IGQLS~s~~qI~~ks~eL~~LL~~ 403 (537)
-+--|.+....+.++...|=+-|..
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsa 612 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSA 612 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3455666667788888888777765
No 36
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=70.53 E-value=88 Score=36.81 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=6.4
Q ss_pred ccccceEEEecCcccc
Q 009317 66 SNARAFVIRVSDDELE 81 (537)
Q Consensus 66 ~~~~~fv~r~~~~~~~ 81 (537)
.+.+-=|--|+-.-++
T Consensus 127 ~~~~s~~e~~d~p~~~ 142 (811)
T KOG4364|consen 127 QRVSSGVENVDAPVLE 142 (811)
T ss_pred ccccccccccCCcccC
Confidence 3333334444443333
No 37
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=69.35 E-value=18 Score=33.40 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=54.9
Q ss_pred hhhhhhcccccCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCccHHHHHH
Q 009317 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILL 453 (537)
Q Consensus 374 RqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~q~P~~f~Ln~LAKkIVsQaEte~~~sAfPLA~Vav~L~s~~Pef~DILL 453 (537)
++|+..+|.|| .+.+...+.+|..+.... | .....+++.|+..+..+ |...-.+|.++..|...+|+|+..|+
T Consensus 2 ~~v~~~lnkLs--~~n~~~~~~~l~~~~~~~--~--~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~~f~~~ll 74 (200)
T smart00543 2 KKVKGLINKLS--PSNFESIIKELLKLNNSD--K--NLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNPDFGSLLL 74 (200)
T ss_pred hHHHHHHhhCC--HHHHHHHHHHHHHHHccC--H--HHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887 467888888888877654 2 24444555555555543 35677888888888888888888877
Q ss_pred HHhhhh
Q 009317 454 GEFHRA 459 (537)
Q Consensus 454 Arf~k~ 459 (537)
..++..
T Consensus 75 ~~~~~~ 80 (200)
T smart00543 75 ERLQEE 80 (200)
T ss_pred HHHHHH
Confidence 776644
No 38
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=67.61 E-value=58 Score=34.76 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=15.5
Q ss_pred hhhhHHh--hhHHHHHHHHHHHhhhH
Q 009317 206 NHLTAVQ--RDHELKSQIEERKIRSD 229 (537)
Q Consensus 206 ~~~~~~q--rd~e~ksqieer~ir~~ 229 (537)
+||+.|| +-.|.|.|||-.++|.+
T Consensus 268 rhlsevqiakraeerrqieterlrqe 293 (445)
T KOG2891|consen 268 RHLSEVQIAKRAEERRQIETERLRQE 293 (445)
T ss_pred hhhhHHHHHHHHHHHhhhhHHHHhhh
Confidence 4676665 33456668887777754
No 39
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=65.16 E-value=1.6e+02 Score=29.71 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=10.3
Q ss_pred HHhhhhhcHHHHHHHHHHHh
Q 009317 186 REMDRKNDTVYQRKIAEALD 205 (537)
Q Consensus 186 ~E~~r~~d~~~qr~iae~~d 205 (537)
.|.+ .+..+|+.+++++..
T Consensus 53 ~eA~-~~~~e~e~~l~~a~~ 71 (246)
T TIGR03321 53 REAE-QERREYEEKNEELDQ 71 (246)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 3444 444567777766443
No 40
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=65.00 E-value=1.4e+02 Score=29.06 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=5.5
Q ss_pred chhccccchhh
Q 009317 126 YLMDEVGLADG 136 (537)
Q Consensus 126 ~lm~k~~~~~~ 136 (537)
||-.-+.+...
T Consensus 33 ~LR~~tallDp 43 (157)
T PF15236_consen 33 FLRGMTALLDP 43 (157)
T ss_pred ccccccccCCH
Confidence 56555554443
No 41
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=64.14 E-value=1.8e+02 Score=29.82 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=7.2
Q ss_pred hhcHHHHHHHHHHH
Q 009317 191 KNDTVYQRKIAEAL 204 (537)
Q Consensus 191 ~~d~~~qr~iae~~ 204 (537)
.+..+|+.+++++.
T Consensus 57 ~~~~e~e~~l~~a~ 70 (250)
T PRK14474 57 QEAERYRQKQQSLE 70 (250)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555533
No 42
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=63.56 E-value=2.3e+02 Score=31.62 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.2
Q ss_pred CCCCccCc
Q 009317 9 RCPQKVDG 16 (537)
Q Consensus 9 ~cp~~~~~ 16 (537)
+++..+.|
T Consensus 125 ~ma~~~~G 132 (429)
T PRK00247 125 RMARPEGG 132 (429)
T ss_pred hccccCCc
Confidence 33333444
No 43
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=59.68 E-value=3.4e+02 Score=34.24 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=11.0
Q ss_pred ccceEEEecCcccc
Q 009317 68 ARAFVIRVSDDELE 81 (537)
Q Consensus 68 ~~~fv~r~~~~~~~ 81 (537)
.-|||=-|+-|+|.
T Consensus 353 ~pP~vPevssd~DT 366 (1317)
T KOG0612|consen 353 VPPVVPEVSSDDDT 366 (1317)
T ss_pred CCCCCCcCCCCCcc
Confidence 56788888888875
No 44
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.03 E-value=1.6e+02 Score=27.66 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=12.5
Q ss_pred hHHHhhhhhcHHHHHHHHHHHhhh
Q 009317 184 MRREMDRKNDTVYQRKIAEALDNH 207 (537)
Q Consensus 184 ~r~E~~r~~d~~~qr~iae~~d~~ 207 (537)
.+.|++ .+..+|+.+++++..+.
T Consensus 68 ~~~ea~-~~~~e~e~~L~~A~~ea 90 (156)
T CHL00118 68 ILAKAN-ELTKQYEQELSKARKEA 90 (156)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344454 45556666666654433
No 45
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.98 E-value=62 Score=33.88 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009317 264 AEEAKRAALEAEKRAAKE 281 (537)
Q Consensus 264 a~e~~kaa~ea~~k~a~e 281 (537)
.++++||.-|.++|+..|
T Consensus 158 ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 158 EEKERKAKEEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666666665555
No 46
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=56.69 E-value=41 Score=40.13 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=12.8
Q ss_pred hhhhHHhhhHHHHHHHHHHHhh
Q 009317 206 NHLTAVQRDHELKSQIEERKIR 227 (537)
Q Consensus 206 ~~~~~~qrd~e~ksqieer~ir 227 (537)
+|++++|+.-+.+.+.+||+-|
T Consensus 214 Kgv~~~qe~La~~qe~eE~qkr 235 (1064)
T KOG1144|consen 214 KGVRAMQEALAKRQEEEERQKR 235 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555555554
No 47
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=52.64 E-value=2.1e+02 Score=27.21 Aligned_cols=15 Identities=13% Similarity=-0.135 Sum_probs=7.9
Q ss_pred hhcHHHHHHHHHHHh
Q 009317 191 KNDTVYQRKIAEALD 205 (537)
Q Consensus 191 ~~d~~~qr~iae~~d 205 (537)
.+..+|+.+++++..
T Consensus 70 ~~~~e~e~~L~~a~~ 84 (175)
T PRK14472 70 AILRKNRELLAKADA 84 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444556666665443
No 48
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=1.6e+02 Score=31.48 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhcC
Q 009317 411 SLATFSKKVVSRCET 425 (537)
Q Consensus 411 ~Ln~LAKkIVsQaEt 425 (537)
.+.-+||-||..+.-
T Consensus 356 v~~~~ak~~id~g~l 370 (379)
T COG5269 356 VFDEFAKMFIDRGKL 370 (379)
T ss_pred HHHHHHHHHHhcCCC
Confidence 456677777766553
No 49
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=50.93 E-value=2.3e+02 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=15.7
Q ss_pred HhHHHhhhhhcHHHHHHHHHHHhhhhhH
Q 009317 183 DMRREMDRKNDTVYQRKIAEALDNHLTA 210 (537)
Q Consensus 183 ~~r~E~~r~~d~~~qr~iae~~d~~~~~ 210 (537)
+.+.|++ .+-.+|+.+++.+..+.-..
T Consensus 64 ~~~~ea~-~~~~~~~~~L~~a~~ea~~i 90 (174)
T PRK07352 64 ERLRQAA-QALAEAQQKLAQAQQEAERI 90 (174)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4445555 55567777777765444443
No 50
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=50.30 E-value=2.6e+02 Score=31.17 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=11.1
Q ss_pred hcchHHHHHHHHHHH
Q 009317 335 RATESALNIEQKRLQ 349 (537)
Q Consensus 335 ~~~~sALe~~~er~k 349 (537)
-+++-+|++.+.|+-
T Consensus 412 pidp~~leefkrril 426 (442)
T PF06637_consen 412 PIDPASLEEFKRRIL 426 (442)
T ss_pred CCChHHHHHHHHHHH
Confidence 466778999888753
No 51
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=48.61 E-value=3.6e+02 Score=28.60 Aligned_cols=9 Identities=33% Similarity=0.379 Sum_probs=4.5
Q ss_pred HHHHhhhcc
Q 009317 138 LVELTHQHQ 146 (537)
Q Consensus 138 l~e~~~~~~ 146 (537)
|.||.+..|
T Consensus 41 lrel~~S~~ 49 (276)
T PF12037_consen 41 LRELNSSPH 49 (276)
T ss_pred HHHHhcChh
Confidence 555554444
No 52
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=47.75 E-value=2.6e+02 Score=26.68 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=11.2
Q ss_pred hHHHhhhhhcHHHHHHHHHHHhh
Q 009317 184 MRREMDRKNDTVYQRKIAEALDN 206 (537)
Q Consensus 184 ~r~E~~r~~d~~~qr~iae~~d~ 206 (537)
.+.|.+ .+..+|+.+++++..+
T Consensus 62 ~~~eA~-~~~~e~e~~l~~a~~e 83 (173)
T PRK13460 62 LRLEAE-ALLKDYEARLNSAKDE 83 (173)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444 4445666666664433
No 53
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=47.20 E-value=2.7e+02 Score=26.79 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=10.2
Q ss_pred HHhhhhhcHHHHHHHHHHHh
Q 009317 186 REMDRKNDTVYQRKIAEALD 205 (537)
Q Consensus 186 ~E~~r~~d~~~qr~iae~~d 205 (537)
.|++ .+-.+|+..++++..
T Consensus 72 ~eA~-~~~~e~e~~L~~A~~ 90 (184)
T CHL00019 72 EEAI-EKLEKARARLRQAEL 90 (184)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 4444 444566666666443
No 54
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=46.63 E-value=32 Score=38.87 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=12.5
Q ss_pred cccCCCCCccccccCCccch
Q 009317 108 YLSESDDSDDDVALGGESYL 127 (537)
Q Consensus 108 ~ls~~~~~d~~~~~~~~~~l 127 (537)
|...+||+|+|....-+||+
T Consensus 220 ~~eesDd~deEep~sqePyf 239 (615)
T KOG3540|consen 220 YSEESDDEDEEEPSSQEPYF 239 (615)
T ss_pred cccccccccccCCcccCCce
Confidence 44455677777666666764
No 55
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=46.40 E-value=81 Score=31.40 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 009317 232 YEEAKRK 238 (537)
Q Consensus 232 ~eEA~rk 238 (537)
.+.|++|
T Consensus 85 ~eaAR~R 91 (190)
T PF06936_consen 85 MEAARRR 91 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 56
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=43.54 E-value=2e+02 Score=31.36 Aligned_cols=69 Identities=32% Similarity=0.361 Sum_probs=41.1
Q ss_pred hhhHHhhhHHHHHHHHHHHhh--hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009317 207 HLTAVQRDHELKSQIEERKIR--SDAAYEEAKRKER---ALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKE 281 (537)
Q Consensus 207 ~~~~~qrd~e~ksqieer~ir--~~aa~eEA~rke~---a~qeek~rqekak~eae~~a~~~a~e~~kaa~ea~~k~a~e 281 (537)
.|+.+.+.|+.| -|+|= .|.=.+|-||--. .+-.|| -+..-+++|.+++++-+|-.|.|.++|.+.|.-
T Consensus 243 EL~q~Ee~hq~k----Krk~~estdsf~~eLKr~c~~kvevd~eK--~~~~i~q~eeq~rkr~eE~~k~a~~~A~~~ass 316 (410)
T KOG4715|consen 243 ELLQIEERHQEK----KRKFLESTDSFNNELKRLCGLKVEVDMEK--MAAEIAQAEEQARKRQEEREKEAAEQAEQSASS 316 (410)
T ss_pred HHHHHHHHHHHH----HHHHHhccHHHHHHHHHhcCCcccccHHH--HHHHHHHHHHHHHHhHhHHHhhHhhhhhhhhcc
Confidence 455555566555 45553 3666677766321 222333 344445666678888888888887777776655
No 57
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.46 E-value=24 Score=39.46 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHH--HhccCCCCcccccc
Q 009317 21 PEPDWSFDALLSELNSLET--RLNASSKPVPFTKT 53 (537)
Q Consensus 21 p~p~w~~~~~~~e~~~~~~--~~~~~~~~~p~~~~ 53 (537)
|.|.|||++-...--++-. +-+++++|+|++-+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQ 249 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQ 249 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhc
Confidence 9999999998877666533 56788899999854
No 58
>PLN03086 PRLI-interacting factor K; Provisional
Probab=42.17 E-value=1.7e+02 Score=33.84 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 009317 249 QEKVKAEAE 257 (537)
Q Consensus 249 qekak~eae 257 (537)
|+|.|+++|
T Consensus 22 ~~~~~~~~~ 30 (567)
T PLN03086 22 RAKLKLERE 30 (567)
T ss_pred HHHHHHHHH
Confidence 334444444
No 59
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=41.18 E-value=1.1e+02 Score=23.86 Aligned_cols=16 Identities=44% Similarity=0.343 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 009317 261 KLRAEEAKRAALEAEK 276 (537)
Q Consensus 261 ~~~a~e~~kaa~ea~~ 276 (537)
.+.+|.+|+.++||.+
T Consensus 11 ~k~aEaeKqraAEA~k 26 (42)
T PF07046_consen 11 TKVAEAEKQRAAEATK 26 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 60
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=39.12 E-value=3.7e+02 Score=26.04 Aligned_cols=23 Identities=13% Similarity=0.445 Sum_probs=14.3
Q ss_pred HhHHHhhhhhcHHHHHHHHHHHhh
Q 009317 183 DMRREMDRKNDTVYQRKIAEALDN 206 (537)
Q Consensus 183 ~~r~E~~r~~d~~~qr~iae~~d~ 206 (537)
+.+.|++ .+..+|+..++++..+
T Consensus 76 ~~~~eA~-~~~~eye~~L~~Ar~E 98 (181)
T PRK13454 76 ELKQKAV-EAEKAYNKALADARAE 98 (181)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4455666 6667777777775433
No 61
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=39.01 E-value=6.5e+02 Score=31.17 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=12.5
Q ss_pred HHhhhhhcHHHHHHHHHHHhhhhhH
Q 009317 186 REMDRKNDTVYQRKIAEALDNHLTA 210 (537)
Q Consensus 186 ~E~~r~~d~~~qr~iae~~d~~~~~ 210 (537)
+=+|+.+....+.+.|-.+=+||+.
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555544
No 62
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=38.94 E-value=3.6e+02 Score=25.81 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=9.9
Q ss_pred HHHhhhhhcHHHHHHHHHHHh
Q 009317 185 RREMDRKNDTVYQRKIAEALD 205 (537)
Q Consensus 185 r~E~~r~~d~~~qr~iae~~d 205 (537)
+.|.+ .+-.+|+.+++.+..
T Consensus 65 ~~eA~-~~~~e~e~~l~~a~~ 84 (173)
T PRK13453 65 KLNAQ-KLEEENKQKLKETQE 84 (173)
T ss_pred HHHHH-HHHHHHHHHHHHHHH
Confidence 34444 444456666655433
No 63
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=37.88 E-value=6.3e+02 Score=28.37 Aligned_cols=41 Identities=34% Similarity=0.479 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 009317 212 QRDHELKSQIEERKIR-SDAAYEEAKRKERALQEEKIRQEKV 252 (537)
Q Consensus 212 qrd~e~ksqieer~ir-~~aa~eEA~rke~a~qeek~rqeka 252 (537)
-+|||.-.++-..+-- .+|.+-||--+-++.|||..++=+|
T Consensus 83 akd~eae~~~~akk~a~kea~ra~~~akkraa~eee~k~wka 124 (510)
T PF04747_consen 83 AKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKKWKA 124 (510)
T ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3677776555444332 1222223333344555554444333
No 64
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=37.35 E-value=1e+02 Score=32.48 Aligned_cols=29 Identities=31% Similarity=0.215 Sum_probs=18.2
Q ss_pred HHHhhHHhHHhHHHhhhhhcHHHHHHHHH
Q 009317 174 ALAQVEKDRDMRREMDRKNDTVYQRKIAE 202 (537)
Q Consensus 174 ~~~~~~k~~~~r~E~~r~~d~~~qr~iae 202 (537)
+-.+.++.++.|.++-.+++..+||++-|
T Consensus 284 ~~~k~e~kr~e~~~~~~~lspeeQrK~ee 312 (321)
T PF07946_consen 284 QEKKEEKKREERERKLSKLSPEEQRKYEE 312 (321)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44445555555555555777788887776
No 65
>PTZ00491 major vault protein; Provisional
Probab=37.13 E-value=4e+02 Score=32.41 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009317 212 QRDHELKSQIEERKIRSDAAYEEAKRKE 239 (537)
Q Consensus 212 qrd~e~ksqieer~ir~~aa~eEA~rke 239 (537)
.++.|.|-.+|--||-+++.-|++|++=
T Consensus 674 ~~eQea~g~Lerqk~~d~~~aE~~r~~l 701 (850)
T PTZ00491 674 LLEQEARGRLERQKMHDKAKAEEQRTKL 701 (850)
T ss_pred HHHHHhhchhHHHhhhhHHHHHHHHHHH
Confidence 4677888888888888888778886653
No 66
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=36.32 E-value=3.9e+02 Score=25.52 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=9.8
Q ss_pred Cccc--cCCccccHHHHHHHHH
Q 009317 486 GYRE--EDGKIESLENYLSRLK 505 (537)
Q Consensus 486 GYr~--~dG~~Esed~YlkRMt 505 (537)
|+.. .+|+++-.-+|..||.
T Consensus 150 Gvil~~~~g~I~~dnT~~~rl~ 171 (188)
T PRK02292 150 GVVVESEDGRVRVNNTFDSILE 171 (188)
T ss_pred eEEEEecCCceEEeccHHHHHH
Confidence 5543 2555544445555544
No 67
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=36.26 E-value=47 Score=29.22 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCccccccCccccccCccccccccceEEEecCcccc
Q 009317 22 EPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELE 81 (537)
Q Consensus 22 ~p~w~~~~~~~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~~~ 81 (537)
.|+|+|..|..++..+ |++| ....|+++-.|||-|
T Consensus 22 ~~d~~~~~L~~kI~~~--------f~l~-----------------~~~~~~l~Y~Dedgd 56 (91)
T cd06398 22 QLDLNMDGLREKVEEL--------FSLS-----------------PDADLSLTYTDEDGD 56 (91)
T ss_pred cCCCCHHHHHHHHHHH--------hCCC-----------------CCCcEEEEEECCCCC
Confidence 4899999999998764 2222 145789998888654
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=35.83 E-value=1.8e+02 Score=34.02 Aligned_cols=32 Identities=13% Similarity=-0.164 Sum_probs=13.2
Q ss_pred CHHHHHHHcCccccCCccccHHHHHHHHHHHHHH
Q 009317 477 SEEAYYKTIGYREEDGKIESLENYLSRLKSYMRL 510 (537)
Q Consensus 477 StEeyrK~LGYr~~dG~~Esed~YlkRMtGI~rL 510 (537)
.+.-+-++-||++.-|.+ ..-|+.+-+||-+.
T Consensus 882 m~nrgg~sgrg~fapgg~--srGh~~p~gG~qGg 913 (940)
T KOG4661|consen 882 MTNRGGKSGRGRFAPGGF--SRGHNEPSGGYQGG 913 (940)
T ss_pred ccccccccCCccccCCcc--ccCCcCCCCccccC
Confidence 333444444555432221 12344444555444
No 69
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=35.66 E-value=24 Score=29.87 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.2
Q ss_pred Ccc-ccCCCCCCCHHHHHH
Q 009317 15 DGI-AIDPEPDWSFDALLS 32 (537)
Q Consensus 15 ~~~-~~dp~p~w~~~~~~~ 32 (537)
+|| --||+|.||.+++++
T Consensus 12 ~gi~L~DP~p~~spe~V~d 30 (66)
T TIGR03738 12 NGVRLADPSPAMSPEQVRD 30 (66)
T ss_pred CCeEcCCCCCCCCHHHHHH
Confidence 453 359999999999876
No 70
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.25 E-value=7.7e+02 Score=28.62 Aligned_cols=15 Identities=13% Similarity=-0.146 Sum_probs=8.0
Q ss_pred hhhHHHHhhhccccc
Q 009317 135 DGALVELTHQHQLGV 149 (537)
Q Consensus 135 ~~~l~e~~~~~~~~~ 149 (537)
+.++.+-++.-....
T Consensus 268 ki~~a~~e~e~~~~~ 282 (548)
T COG2268 268 KIILAETEAEVAAWK 282 (548)
T ss_pred hhhccHHHHHHHHHH
Confidence 455555555555544
No 71
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.23 E-value=2.8e+02 Score=32.97 Aligned_cols=10 Identities=0% Similarity=-0.466 Sum_probs=5.0
Q ss_pred hceeeccccc
Q 009317 459 ACIYTVPKHI 468 (537)
Q Consensus 459 ~CPylVP~~~ 468 (537)
.+|++-.|+.
T Consensus 746 ~~~~V~~f~~ 755 (771)
T TIGR01069 746 NHPKVKSFRD 755 (771)
T ss_pred CCcceeeecc
Confidence 3555555543
No 72
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=34.83 E-value=4.2e+02 Score=25.70 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 009317 197 QRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQE-KVKAEAEMQAKLRAEEAK 268 (537)
Q Consensus 197 qr~iae~~d~~~~~~qrd~e~ksqieer~ir~~aa~eEA~rke~a~qeek~rqe-kak~eae~~a~~~a~e~~ 268 (537)
.+-+.++.+.....+....+.+.+.++=+-.-++...+|+.+- ..++++ +.++.++..+++++.++.
T Consensus 36 ~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA-----~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 36 EEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEI-----DRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
No 73
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=34.62 E-value=5.3e+02 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009317 233 EEAKRKERALQEEKIRQEKVKA 254 (537)
Q Consensus 233 eEA~rke~a~qeek~rqekak~ 254 (537)
|+|+++-++=...|..|++.+.
T Consensus 180 e~a~~~~q~W~~kK~~e~~~~r 201 (264)
T PF13904_consen 180 EEAKQRYQEWERKKKEEQQQKR 201 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665555555555555443
No 74
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=34.28 E-value=7.4e+02 Score=28.15 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=12.7
Q ss_pred CccccHHHHHHHHHHHHHHH
Q 009317 492 GKIESLENYLSRLKSYMRLY 511 (537)
Q Consensus 492 G~~Esed~YlkRMtGI~rLY 511 (537)
..-++.+.|++||.-+=.++
T Consensus 427 ar~e~~~~~~~rl~~le~i~ 446 (514)
T TIGR03319 427 ARRESLENYIKRLEKLEEIA 446 (514)
T ss_pred CcccCHHHHHHHHHHHHHHH
Confidence 34567778888876555443
No 75
>PRK12704 phosphodiesterase; Provisional
Probab=32.12 E-value=8.1e+02 Score=27.91 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=12.2
Q ss_pred cccHHHHHHHHHHHHHHH
Q 009317 494 IESLENYLSRLKSYMRLY 511 (537)
Q Consensus 494 ~Esed~YlkRMtGI~rLY 511 (537)
-++.+.|++|+..|-.++
T Consensus 435 ~~~~e~~i~rl~~le~i~ 452 (520)
T PRK12704 435 RETLENYIKRLEKLEEIA 452 (520)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 377778888887664443
No 76
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.83 E-value=1.1e+03 Score=29.45 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhhh
Q 009317 332 SAVRATESALNIEQKRLQKLKELDEENQS 360 (537)
Q Consensus 332 ~~~~~~~sALe~~~er~kkLKel~~~~~~ 360 (537)
..+.+..+++++|..|-+.|.+|.+.+..
T Consensus 853 ~~~n~ne~~vq~y~~r~~el~~l~~~~~~ 881 (1072)
T KOG0979|consen 853 KFENVNEDAVQQYEVREDELRELETKLEK 881 (1072)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHhhhhh
Confidence 36788999999999999999999886555
No 77
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=31.24 E-value=31 Score=28.95 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.3
Q ss_pred Cccc-cCCCCCCCHHHHHHHH
Q 009317 15 DGIA-IDPEPDWSFDALLSEL 34 (537)
Q Consensus 15 ~~~~-~dp~p~w~~~~~~~e~ 34 (537)
+|+- -||.|.||.++|++=.
T Consensus 13 ~g~~L~DP~p~~spe~V~~~y 33 (65)
T PF14454_consen 13 NGITLPDPNPSLSPEEVRDFY 33 (65)
T ss_pred CCEECCCCCCCCCHHHHHHHH
Confidence 5643 4899999999997643
No 78
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=31.23 E-value=5.1e+02 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=13.6
Q ss_pred hhhhcHHHHHHHHHHHhhhhhHHh
Q 009317 189 DRKNDTVYQRKIAEALDNHLTAVQ 212 (537)
Q Consensus 189 ~r~~d~~~qr~iae~~d~~~~~~q 212 (537)
-|.....+|+.|...+.+..-..+
T Consensus 52 rR~kq~E~q~ai~~QieEk~r~k~ 75 (157)
T PF15236_consen 52 RRQKQLEHQRAIKQQIEEKRRQKQ 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777775554444433
No 79
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.17 E-value=3.6e+02 Score=32.15 Aligned_cols=9 Identities=0% Similarity=0.187 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 009317 413 ATFSKKVVS 421 (537)
Q Consensus 413 n~LAKkIVs 421 (537)
.+|.+++..
T Consensus 723 ~fl~~a~~~ 731 (782)
T PRK00409 723 KYLDDALLA 731 (782)
T ss_pred HHHHHHHHc
Confidence 344444443
No 80
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=31.08 E-value=6.4e+02 Score=27.20 Aligned_cols=9 Identities=44% Similarity=0.626 Sum_probs=4.3
Q ss_pred HHhhhHHHH
Q 009317 210 AVQRDHELK 218 (537)
Q Consensus 210 ~~qrd~e~k 218 (537)
++.||--+|
T Consensus 225 A~~~DPRIK 233 (379)
T COG5269 225 AKKRDPRIK 233 (379)
T ss_pred HHhcCcchh
Confidence 344555554
No 81
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=30.96 E-value=5.8e+02 Score=25.88 Aligned_cols=72 Identities=10% Similarity=0.099 Sum_probs=48.0
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhhhcccCcccccccchhhhhhhcccccCchh-hHHHHHHHHHHHhcC
Q 009317 332 SAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKD-NVRTKASELVKILNN 403 (537)
Q Consensus 332 ~~~~~~~sALe~~~er~kkLKel~~~~~~lks~lkk~~kk~rRqI~k~IGQLS~s~~-qI~~ks~eL~~LL~~ 403 (537)
.+|++.+.-++.-......|...-.....+....++.+...-+.|-...|.|-++.+ ++...-..|...|+.
T Consensus 178 i~I~v~p~d~~~v~~~~~~l~~~~~~~~~i~i~~D~~l~~GgcvIEt~~G~iDasldtqLe~l~~~l~~~l~~ 250 (255)
T TIGR03825 178 VSIYVHPHWYERVAAQKDELQSILPACEHLAVYPDEKLPDGGCYVETNFGRIDASVDTQLEQLKEKLLEALKE 250 (255)
T ss_pred EEEEECHHHHHHHHHhHHHHHhhcCCCCceEEEeCCCCCCCCeEEEcCCceEEeeHHHHHHHHHHHHHHHHhc
Confidence 457888876665554444333321112223445667777788888888999998885 788888888888853
No 82
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=30.85 E-value=4.5e+02 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=10.2
Q ss_pred HHHhhhhhcHHHHHHHHHHH
Q 009317 185 RREMDRKNDTVYQRKIAEAL 204 (537)
Q Consensus 185 r~E~~r~~d~~~qr~iae~~ 204 (537)
+.|++ .+-.+|+..++++.
T Consensus 55 ~~ea~-~~~~e~e~~l~~A~ 73 (164)
T PRK14473 55 REQLA-NAKRDYEAELAKAR 73 (164)
T ss_pred HHHHH-HHHHHHHHHHHHHH
Confidence 33444 44556666666644
No 83
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=30.32 E-value=4.6e+02 Score=24.48 Aligned_cols=26 Identities=31% Similarity=0.288 Sum_probs=14.1
Q ss_pred hHHHhhhhhcHHHHHHHHHHHhhhhhH
Q 009317 184 MRREMDRKNDTVYQRKIAEALDNHLTA 210 (537)
Q Consensus 184 ~r~E~~r~~d~~~qr~iae~~d~~~~~ 210 (537)
.+.+++ .+-.+|+.+++.+..+....
T Consensus 48 ~~~eA~-~~~~~~e~~L~~A~~ea~~i 73 (159)
T PRK09173 48 LREEAQ-QLLAEYQRKRKEAEKEAADI 73 (159)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344444 55566777766655444333
No 84
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=29.30 E-value=4.2e+02 Score=26.47 Aligned_cols=13 Identities=46% Similarity=0.557 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 009317 234 EAKRKERALQEEK 246 (537)
Q Consensus 234 EA~rke~a~qeek 246 (537)
++++|++.++|||
T Consensus 102 ~~kEKq~q~EEEK 114 (190)
T PF06936_consen 102 EYKEKQKQEEEEK 114 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444443333333
No 85
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.97 E-value=2.3e+02 Score=26.74 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=6.0
Q ss_pred hHHhhhHHHHH
Q 009317 209 TAVQRDHELKS 219 (537)
Q Consensus 209 ~~~qrd~e~ks 219 (537)
.+++.++|++.
T Consensus 89 ~ALk~q~E~~K 99 (132)
T PF11208_consen 89 QALKLQREQRK 99 (132)
T ss_pred HHHHHHHHHHH
Confidence 34555666653
No 86
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.48 E-value=7.8e+02 Score=26.62 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=4.2
Q ss_pred hhccccch
Q 009317 127 LMDEVGLA 134 (537)
Q Consensus 127 lm~k~~~~ 134 (537)
.|+-.|.+
T Consensus 229 fmeykgfa 236 (445)
T KOG2891|consen 229 FMEYKGFA 236 (445)
T ss_pred HHHHHhHH
Confidence 35555554
No 87
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=27.88 E-value=9.2e+02 Score=27.22 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHHHHHHhhhhHHhhHHHHhhHHhHHhHHHhhhhhcHHHHHHHHH
Q 009317 148 GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAE 202 (537)
Q Consensus 148 ~~~e~~r~~~~~le~~~~~e~q~~~~~~~~~~k~~~~r~E~~r~~d~~~qr~iae 202 (537)
|+..-+..+...+|.++++|.+|...+++. +=--++|++++ .+|||.-|+
T Consensus 195 rl~~~~kkq~l~le~~l~eEy~rkm~aL~~-~c~lE~r~k~e----~~~qre~a~ 244 (429)
T PF12297_consen 195 RLSSVFKKQFLGLEKRLQEEYDRKMVALTA-ECNLETRKKME----AQHQREMAE 244 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH----HHHHHHHHH
Confidence 456667788999999999999998888763 22235666554 889998873
No 88
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.76 E-value=1.2e+03 Score=28.65 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHh-hhhHHhhHHHHhhHHhHHhHHHhhhhh
Q 009317 150 KEEIRNLISTLETQLI-SENEQSNSALAQVEKDRDMRREMDRKN 192 (537)
Q Consensus 150 ~e~~r~~~~~le~~~~-~e~q~~~~~~~~~~k~~~~r~E~~r~~ 192 (537)
.-|..+++..++.-+. -|....+..|-..+++-+.|.+=|+.+
T Consensus 679 ~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~ 722 (988)
T KOG2072|consen 679 RKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDREL 722 (988)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 3455555555555443 245555555555555555554444433
No 89
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=27.06 E-value=6.4e+02 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=15.9
Q ss_pred hHHHhhhhhcHHHHHHHHHHHhhhhhH
Q 009317 184 MRREMDRKNDTVYQRKIAEALDNHLTA 210 (537)
Q Consensus 184 ~r~E~~r~~d~~~qr~iae~~d~~~~~ 210 (537)
.+.|.+ .+-.+|+.+++++..+-...
T Consensus 99 ~k~eAe-~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 99 LKQEAD-AAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445555 56677888888765544433
No 90
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=26.74 E-value=21 Score=42.23 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred ccccCCCCCc
Q 009317 107 LYLSESDDSD 116 (537)
Q Consensus 107 ~~ls~~~~~d 116 (537)
|.-++++|+|
T Consensus 694 L~~~seSe~e 703 (787)
T PF03115_consen 694 LHPSSESEDE 703 (787)
T ss_dssp ----------
T ss_pred cCcccccccc
Confidence 4444333333
No 91
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=26.64 E-value=2.9e+02 Score=31.92 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=21.4
Q ss_pred CCCCCcccccch-----hhhcchHHHHHHHHHHHHHHHHHHHhh
Q 009317 321 GSRSDGTKKLQS-----AVRATESALNIEQKRLQKLKELDEENQ 359 (537)
Q Consensus 321 ~~~~~~~~~~~~-----~~~~~~sALe~~~er~kkLKel~~~~~ 359 (537)
|+..+||+|.-- +-+++.+....+..+.-.|.-|.+.+-
T Consensus 483 ~~cs~~~~~r~~~~s~lshl~sqkt~tl~sv~~~~lcaidqe~P 526 (708)
T KOG3654|consen 483 GCCSPGIPKRGGYGSSLSHLASQKTETLESVHSGLLCAIDQETP 526 (708)
T ss_pred cccCCCCcccCCccchhHHHhhhccCChHhhhhhhhccccccCC
Confidence 455577765432 234555566666666666655554433
No 92
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=26.24 E-value=2.2e+02 Score=22.22 Aligned_cols=11 Identities=64% Similarity=0.622 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 009317 271 ALEAEKRAAKE 281 (537)
Q Consensus 271 a~ea~~k~a~e 281 (537)
++|++++.++|
T Consensus 27 ~aEaeKqraaE 37 (42)
T PF07046_consen 27 AAEAEKQRAAE 37 (42)
T ss_pred HHHHHHHHHHH
Confidence 44555555555
No 93
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=26.22 E-value=90 Score=32.92 Aligned_cols=18 Identities=44% Similarity=0.588 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009317 235 AKRKERALQEEKIRQEKV 252 (537)
Q Consensus 235 A~rke~a~qeek~rqeka 252 (537)
+||||+.+=||++++++.
T Consensus 95 ~krkek~~iee~e~~~q~ 112 (279)
T PF07271_consen 95 YKRKEKRMIEEKEEHEQL 112 (279)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 568888888888776663
No 94
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=26.02 E-value=4.9e+02 Score=23.49 Aligned_cols=100 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHhhHHHHhhHHhHHhHHHhhhhhcHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 009317 169 EQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIR 248 (537)
Q Consensus 169 q~~~~~~~~~~k~~~~r~E~~r~~d~~~qr~iae~~d~~~~~~qrd~e~ksqieer~ir~~aa~eEA~rke~a~qeek~r 248 (537)
+|...--..++.-.+.+.|.+ .+-.+|+..++++......-+...+..-.++.+..+ +.|.+|+.+.. +.-...+.
T Consensus 36 ~R~~~I~~~l~~Ae~~~~ea~-~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~--~~a~~ea~~~~-~~a~~~i~ 111 (140)
T PRK07353 36 EREDYIRTNRAEAKERLAEAE-KLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEAL--AEAQAEAQASK-EKARREIE 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009317 249 QEKVKAEAEMQAKLRAEEAKRAALEAEKR 277 (537)
Q Consensus 249 qekak~eae~~a~~~a~e~~kaa~ea~~k 277 (537)
+++.++..++...-- .-+.+.+.|
T Consensus 112 ~e~~~a~~~l~~~v~-----~la~~~a~k 135 (140)
T PRK07353 112 QQKQAALAQLEQQVD-----ALSRQILEK 135 (140)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHH
No 95
>PRK12705 hypothetical protein; Provisional
Probab=25.68 E-value=1.1e+03 Score=27.17 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=7.0
Q ss_pred cccHHHHHHHHHH
Q 009317 494 IESLENYLSRLKS 506 (537)
Q Consensus 494 ~Esed~YlkRMtG 506 (537)
.++.+.|.+|+..
T Consensus 423 ~~s~e~yv~rL~~ 435 (508)
T PRK12705 423 RESLDEYVQRLEE 435 (508)
T ss_pred cCCHHHHHHHHHH
Confidence 4455566665543
No 96
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=24.92 E-value=1.9e+02 Score=32.91 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=15.6
Q ss_pred hhcHHHHHHHHHHHhhhhhH
Q 009317 191 KNDTVYQRKIAEALDNHLTA 210 (537)
Q Consensus 191 ~~d~~~qr~iae~~d~~~~~ 210 (537)
|+|....|++-|-|++.|.+
T Consensus 534 kmd~lrerelreslekql~~ 553 (641)
T KOG3915|consen 534 KMDFLRERELRESLEKQLAM 553 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888887776
No 97
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=24.84 E-value=8.6e+02 Score=25.86 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=17.2
Q ss_pred hhHHHHhhhcccccHHHHHHHHHHHH
Q 009317 136 GALVELTHQHQLGVKEEIRNLISTLE 161 (537)
Q Consensus 136 ~~l~e~~~~~~~~~~e~~r~~~~~le 161 (537)
.-.+||++.+-.--|.|++.++...+
T Consensus 51 k~afel~k~QE~TkQ~E~~ak~~e~e 76 (276)
T PF12037_consen 51 KKAFELMKKQEETKQAELQAKIAEYE 76 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777766655777777766555
No 98
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=24.63 E-value=2.9e+02 Score=27.06 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 009317 239 ERALQEEKIRQE 250 (537)
Q Consensus 239 e~a~qeek~rqe 250 (537)
|++.+|+++|+-
T Consensus 139 e~~~kEe~lr~l 150 (158)
T PF02731_consen 139 EKEEKEEKLREL 150 (158)
T ss_pred HHHHHHHHHHHH
Confidence 334444544443
No 99
>PRK11637 AmiB activator; Provisional
Probab=24.56 E-value=9.3e+02 Score=26.15 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=6.3
Q ss_pred HHhhhhhcHHHH
Q 009317 186 REMDRKNDTVYQ 197 (537)
Q Consensus 186 ~E~~r~~d~~~q 197 (537)
..+..++...|+
T Consensus 124 ~~l~~rlra~Y~ 135 (428)
T PRK11637 124 RLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHH
Confidence 445555555555
No 100
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=24.50 E-value=1.8e+03 Score=29.61 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=50.8
Q ss_pred chhccccchhhhHHHHhhh--cccccHHHHHHHHHHHHHHHhhhhHHhhHHHHhhHHhH----HhHHHhhhhhcHHHHHH
Q 009317 126 YLMDEVGLADGALVELTHQ--HQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDR----DMRREMDRKNDTVYQRK 199 (537)
Q Consensus 126 ~lm~k~~~~~~~l~e~~~~--~~~~~~e~~r~~~~~le~~~~~e~q~~~~~~~~~~k~~----~~r~E~~r~~d~~~qr~ 199 (537)
-||++.+...+.|-|.+.. ..++.+..+.+++..+-.++..|..+....-..+.+.. ..|..+| ..|-.
T Consensus 1270 ~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~le-----ee~e~ 1344 (1930)
T KOG0161|consen 1270 RLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLE-----EEQEA 1344 (1930)
T ss_pred HhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 3555566666666554442 12244555555555555555555443332222222221 1112222 23444
Q ss_pred HHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 009317 200 IAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRK 238 (537)
Q Consensus 200 iae~~d~~~~~~qrd~e~ksqieer~ir~~aa~eEA~rk 238 (537)
+++.+-+|..+.....+-|.++++-.+..-.-.||++++
T Consensus 1345 ~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~ 1383 (1930)
T KOG0161|consen 1345 KNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKK 1383 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566666666666666433333444444
No 101
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.19 E-value=7.9e+02 Score=25.21 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=22.8
Q ss_pred HHHHhhhcccccHHHHHHHHHHHHHHHhhhhHHhhHHHHh
Q 009317 138 LVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQ 177 (537)
Q Consensus 138 l~e~~~~~~~~~~e~~r~~~~~le~~~~~e~q~~~~~~~~ 177 (537)
.+||++.|| ..++.+..|-..+..|.+|-.++=++
T Consensus 61 ~~eLm~r~~-----~Y~~~vrslR~~fr~Ev~r~~e~~~g 95 (227)
T KOG4691|consen 61 FFELMERYQ-----HYRQTVRSLRMEFRSEVQRVHEARAG 95 (227)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 455555444 35677777777888888876665555
No 102
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.83 E-value=6.3e+02 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=6.4
Q ss_pred hhcHHHHHHHHHH
Q 009317 191 KNDTVYQRKIAEA 203 (537)
Q Consensus 191 ~~d~~~qr~iae~ 203 (537)
.+-.+|+..++++
T Consensus 56 ~~~~e~~~~l~~a 68 (156)
T PRK05759 56 LAQAKYEAQLAEA 68 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555554
No 103
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=21.31 E-value=1.3e+03 Score=26.50 Aligned_cols=16 Identities=38% Similarity=0.374 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009317 266 EAKRAALEAEKRAAKE 281 (537)
Q Consensus 266 e~~kaa~ea~~k~a~e 281 (537)
+++-||+-|++.+|+|
T Consensus 427 eEq~AA~TAaq~eA~E 442 (672)
T KOG4722|consen 427 EEQEAAATAAQAEAAE 442 (672)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666666666
No 104
>PF00922 Phosphoprotein: Vesiculovirus phosphoprotein; InterPro: IPR000224 This entry contains phosphoprotein from vesiculoviruses, which are ssRNA negative-strand rhabdoviruses. It is known as the phosphoprotein or P protein [, ]. This protein may be part of the RNA dependent RNA polymerase complex []. The phosphorylation states of this protein may regulate the transcription and replication complexes [].; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2K47_A 3PMK_R 2FQM_F 3HHZ_C 3HHW_D.
Probab=21.30 E-value=65 Score=34.00 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcccc
Q 009317 26 SFDALLSELNSLETRLNASSKPVPFT 51 (537)
Q Consensus 26 ~~~~~~~e~~~~~~~~~~~~~~~p~~ 51 (537)
.|++-|+|+|.+|..+-... .+ |+
T Consensus 12 ~Ld~a~~eidemEs~reek~-n~-Fq 35 (283)
T PF00922_consen 12 KLDQAVQEIDEMESQREEKT-NF-FQ 35 (283)
T ss_dssp THHHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHhhhhcc-cc-cc
Confidence 38999999999999887665 33 55
No 105
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=21.14 E-value=1.1e+02 Score=34.19 Aligned_cols=38 Identities=8% Similarity=0.015 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHccCCCCcc--Ccchhhhhh
Q 009317 496 SLENYLSRLKSYMRLYAALIQCMTKNACF--GRRKFRVSR 533 (537)
Q Consensus 496 sed~YlkRMtGI~rLYAAIiQt~~~~~Py--gi~~~W~wL 533 (537)
+++++-.=+-|++.+|.+|+.+.+|+.|| |...+|+.+
T Consensus 88 t~~N~~rGil~~i~~FL~~svlafpngpF~RPHPa~WR~v 127 (466)
T KOG2735|consen 88 TETNVKRGILAMIAVFLIISVLAFPNGPFIRPHPALWRIV 127 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHH
Confidence 45577777889999999999999999988 677889864
No 106
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=21.10 E-value=1.2e+03 Score=27.65 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHhh
Q 009317 213 RDHELKSQIEERKIR 227 (537)
Q Consensus 213 rd~e~ksqieer~ir 227 (537)
|+.|.++.|+|++.|
T Consensus 621 Re~eer~RirE~rer 635 (940)
T KOG4661|consen 621 REAEERQRIREERER 635 (940)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444445454443
No 107
>PF11002 RDM: RFPL defining motif (RDM); InterPro: IPR022723 The RFPL defining motif (RDM) is a domain found on RFPL (Ret finger protein like) proteins. In humans, RFPL transcripts can be detected at the onset of neurogenesis in differentiating human embryonic stem cells, and in the developing human neocortex []. The RDM domain is thought to have emerged from a neofunctionalisation event. It is found N-terminal to the SPRY domain (PF00622 from PFAM). ; PDB: 2FBE_B.
Probab=20.77 E-value=33 Score=26.73 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCC
Q 009317 20 DPEPDWSFDALLSELNSLETRLNASS 45 (537)
Q Consensus 20 dp~p~w~~~~~~~e~~~~~~~~~~~~ 45 (537)
|-.|+|-+|.|+|-+.+||-+|++.-
T Consensus 7 Di~p~~qLg~Lvs~iKelEPqL~~iL 32 (42)
T PF11002_consen 7 DIRPNFQLGKLVSKIKELEPQLRAIL 32 (42)
T ss_dssp --------------------------
T ss_pred cccHHHHHHHHHHHHHHhCHHHHHHH
Confidence 66899999999999999998887643
No 108
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=20.62 E-value=7.6e+02 Score=23.68 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=10.7
Q ss_pred hHHHhhhhhcHHHHHHHHHHH
Q 009317 184 MRREMDRKNDTVYQRKIAEAL 204 (537)
Q Consensus 184 ~r~E~~r~~d~~~qr~iae~~ 204 (537)
.+.|.+ .+..+|+.+++++.
T Consensus 73 ~~~eA~-~~l~e~e~~L~~A~ 92 (184)
T PRK13455 73 LREEAQ-TLLASYERKQREVQ 92 (184)
T ss_pred HHHHHH-HHHHHHHHHHHHHH
Confidence 344444 44556666666643
No 109
>PHA02664 hypothetical protein; Provisional
Probab=20.60 E-value=93 Score=33.88 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=24.0
Q ss_pred CccccccCCCCccCccccCCCCCCC------------HHHHHHHHHHHHHHhccCC
Q 009317 2 GAIKLELRCPQKVDGIAIDPEPDWS------------FDALLSELNSLETRLNASS 45 (537)
Q Consensus 2 ~~~~~e~~cp~~~~~~~~dp~p~w~------------~~~~~~e~~~~~~~~~~~~ 45 (537)
|++-+-+-=|+ .||+-+=|.|-=. -++-..=|++-|...|+..
T Consensus 348 gmvyvppeepr-mdglcvfptpaepaalfv~g~~v~~agaaaamiaaae~~~~~a~ 402 (534)
T PHA02664 348 GMVYVPPEEPR-MDGLCVFPTPAEPAALFVDGNEVIAAGAAAAMIAAAERAANGAR 402 (534)
T ss_pred eEEECCCCCcc-cCceeecCCCCCceeEEeccchhhhchhHHHHHhhhhhhhcccc
Confidence 34444444454 3776666666422 2444455677777777665
No 110
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=20.54 E-value=66 Score=35.98 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 009317 500 YLSRLKSYMRLYAA 513 (537)
Q Consensus 500 YlkRMtGI~rLYAA 513 (537)
=.+||.=|+-+.|.
T Consensus 428 GAERMrELGL~mA~ 441 (458)
T PF10446_consen 428 GAERMRELGLEMAG 441 (458)
T ss_pred hHHHHHHHHHHHhh
Confidence 35677776666665
Done!