Query 009317
Match_columns 537
No_of_seqs 142 out of 179
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 23:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pev_B Nucleoporin GLE1; RECA, 100.0 2.9E-49 1E-53 398.6 13.7 184 348-537 16-217 (297)
2 3oja_B Anopheles plasmodium-re 73.3 95 0.0032 32.6 16.5 17 171-187 475-491 (597)
3 2zuo_A MVP, major vault protei 70.6 67 0.0023 37.0 14.9 36 212-247 679-714 (861)
4 3rk6_A Polyadenylate-binding p 57.1 15 0.0005 35.6 5.7 87 371-459 18-110 (234)
5 2i1j_A Moesin; FERM, coiled-co 49.8 69 0.0024 34.9 10.2 26 341-366 510-535 (575)
6 3vkg_A Dynein heavy chain, cyt 43.2 7E+02 0.024 33.1 18.9 24 364-387 2060-2086(3245)
7 3iox_A AGI/II, PA; alpha helix 37.6 4.3E+02 0.015 28.7 14.7 10 335-344 142-151 (497)
8 3bbo_Z Ribosomal protein L29; 33.4 11 0.00038 35.7 0.6 63 149-211 74-137 (173)
9 1hu3_A EIF4GII; heat repeat, t 30.9 42 0.0014 32.5 4.3 83 369-458 8-100 (260)
10 1deq_A Fibrinogen (alpha chain 30.8 1.1E+02 0.0039 32.1 7.7 63 141-204 117-188 (390)
11 3bc1_B Synaptotagmin-like prot 30.3 32 0.0011 27.3 2.7 23 205-228 9-31 (59)
12 2vso_E Eukaryotic initiation f 28.1 62 0.0021 31.7 5.0 76 368-446 32-108 (284)
13 3d9j_A RNA-binding protein 16; 25.7 49 0.0017 29.6 3.5 20 405-424 59-78 (145)
14 2pjh_A Protein NPL4, nuclear p 21.8 46 0.0016 26.9 2.3 31 4-36 5-35 (80)
15 3iyk_A VP5; icosahedral virus; 21.6 8.2E+02 0.028 26.7 12.3 19 208-226 173-191 (526)
16 3vkg_A Dynein heavy chain, cyt 21.2 1.6E+03 0.054 30.0 17.3 7 183-189 1910-1916(3245)
No 1
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=100.00 E-value=2.9e-49 Score=398.63 Aligned_cols=184 Identities=15% Similarity=0.244 Sum_probs=164.6
Q ss_pred HHHHHHHHHHhhh-c---ccCcccccccchhhhhhhcccccCchhhHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHH
Q 009317 348 LQKLKELDEENQS-L---KLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQSISLATFSKKVV 420 (537)
Q Consensus 348 ~kkLKel~~~~~~-l---ks~lkk~~kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~---q~P~~f~Ln~LAKkIV 420 (537)
.++++.+++.+.. + ++++++.++++||+|+++|||||+|.+||.+++++|.++|++. ++|+.|+||+|||+||
T Consensus 16 ~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV 95 (297)
T 3pev_B 16 KDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVV 95 (297)
T ss_dssp HHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHH
Confidence 3444455555533 3 4578999999999999999999999999999999999999875 4566789999999999
Q ss_pred hhhcCC---CCCccchHHHHHHHHHhcCccHHHHHHHHhhhhceeecccccccccccccCHHHHHHHcCccc-cCCcccc
Q 009317 421 SRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIES 496 (537)
Q Consensus 421 sQaEte---~~~sAfPLA~Vav~L~s~~Pef~DILLArf~k~CPylVP~~~~~~k~~gqStEeyrK~LGYr~-~dG~~Es 496 (537)
+|+|++ +|++|||||.|+++||+.||+|+|+||||||++|||+||||++ .++++|+++|||++ +||+||+
T Consensus 96 ~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~------~~teegr~~mG~~~~~dg~~E~ 169 (297)
T 3pev_B 96 HQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE------IDTEKGRQNMGWKRNNENKWED 169 (297)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC------CSSHHHHHHTTCCBCTTSCBCC
T ss_pred HHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC------cccHHHHHHcCCeeCCCCCccc
Confidence 999995 5899999999999999999999999999999999999999986 36899999999987 5899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCC-------CCccCcchhhhhhcccC
Q 009317 497 LENYLSRLKSYMRLYAALIQCMTK-------NACFGRRKFRVSRTHMA 537 (537)
Q Consensus 497 ed~YlkRMtGI~rLYAAIiQt~~~-------~~Pygi~~~W~wLARi~ 537 (537)
+++|++||+||++|||||+|+++| .||||++++|+|||||+
T Consensus 170 ~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLAril 217 (297)
T 3pev_B 170 NTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARIC 217 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHh
Confidence 999999999999999999999864 48999999999999984
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.35 E-value=95 Score=32.57 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=7.3
Q ss_pred hhHHHHhhHHhHHhHHH
Q 009317 171 SNSALAQVEKDRDMRRE 187 (537)
Q Consensus 171 ~~~~~~~~~k~~~~r~E 187 (537)
.-..+...+++-+.+++
T Consensus 475 ~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 475 QEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 33444444444444433
No 3
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=70.61 E-value=67 Score=37.02 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 009317 212 QRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKI 247 (537)
Q Consensus 212 qrd~e~ksqieer~ir~~aa~eEA~rke~a~qeek~ 247 (537)
.++.|.|-.+|--||.++++.|++|++=-.+|-+-.
T Consensus 679 ~~eQea~g~Lerqki~d~a~aE~~r~~Llel~a~s~ 714 (861)
T 2zuo_A 679 RLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677778888889888888888776544444333
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=57.13 E-value=15 Score=35.62 Aligned_cols=87 Identities=9% Similarity=0.186 Sum_probs=63.2
Q ss_pred cchhhhhhhcccccCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcC---c-
Q 009317 371 GYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV---P- 446 (537)
Q Consensus 371 k~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~q~P~~f~Ln~LAKkIVsQaEte~~~sAfPLA~Vav~L~s~~---P- 446 (537)
.+.|+++-.+|.||...+....++.+|..+++..- ...-.|..+++-|+.++-.+ |..+.-+|.++..|.... |
T Consensus 18 ~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~-~~~~~L~~vi~lIfekAi~e-p~fs~~YA~LC~~l~~~l~~~~~ 95 (234)
T 3rk6_A 18 TLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCV-TTDDALQELVELIYQQATSI-PNFSYMGARLCNYLSHHLTISPQ 95 (234)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHSS-TTCHHHHHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCCCCc
Confidence 57888888899999777777777777777764211 01345777777788777764 567889999999887633 4
Q ss_pred --cHHHHHHHHhhhh
Q 009317 447 --QVMDILLGEFHRA 459 (537)
Q Consensus 447 --ef~DILLArf~k~ 459 (537)
.|..+|+.+.+..
T Consensus 96 ~~~Fr~lLL~rcQ~e 110 (234)
T 3rk6_A 96 SGNFRQLLLQRCRTE 110 (234)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 3889999887765
No 5
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.85 E-value=69 Score=34.85 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcc
Q 009317 341 LNIEQKRLQKLKELDEENQSLKLSSN 366 (537)
Q Consensus 341 Le~~~er~kkLKel~~~~~~lks~lk 366 (537)
++--+...+.|+.|...+..++...+
T Consensus 510 ~ekn~~lq~qL~~L~~el~~~r~~~k 535 (575)
T 2i1j_A 510 AERNERLHNQLKALKQDLARSCDETK 535 (575)
T ss_dssp HHHCHHHHHHHHHHHHHHHTTBCGGG
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344557789999888887665443
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.25 E-value=7e+02 Score=33.10 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=12.1
Q ss_pred Ccccccccchhhhhhh---cccccCch
Q 009317 364 SSNEDFSGYEKDISRL---IRQIRGLK 387 (537)
Q Consensus 364 ~lkk~~kk~rRqI~k~---IGQLS~s~ 387 (537)
.+..++....+++.+. |+.|++-.
T Consensus 2060 ~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2060 QIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3444444455555433 56666544
No 7
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=37.58 E-value=4.3e+02 Score=28.70 Aligned_cols=10 Identities=20% Similarity=0.019 Sum_probs=5.3
Q ss_pred hcchHHHHHH
Q 009317 335 RATESALNIE 344 (537)
Q Consensus 335 ~~~~sALe~~ 344 (537)
+..+.|+...
T Consensus 142 ~lt~~a~~~~ 151 (497)
T 3iox_A 142 FLKASAVDDA 151 (497)
T ss_dssp EECHHHHHHH
T ss_pred eecHHHHHHH
Confidence 4455565554
No 8
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=33.45 E-value=11 Score=35.69 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHHHhhhh-HHhhHHHHhhHHhHHhHHHhhhhhcHHHHHHHHHHHhhhhhHH
Q 009317 149 VKEEIRNLISTLETQLISEN-EQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAV 211 (537)
Q Consensus 149 ~~e~~r~~~~~le~~~~~e~-q~~~~~~~~~~k~~~~r~E~~r~~d~~~qr~iae~~d~~~~~~ 211 (537)
..+|+..++..|..++-|-. |....-+...-+-+..||.|-|.++..-||+.+.+.+++.+..
T Consensus 74 S~eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk 137 (173)
T 3bbo_Z 74 TTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRK 137 (173)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 46888888888888877753 4444445556677899999999999999999999888887764
No 9
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=30.90 E-value=42 Score=32.45 Aligned_cols=83 Identities=7% Similarity=0.104 Sum_probs=50.1
Q ss_pred cccchhhhhhhcccccCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHh-cCcc
Q 009317 369 FSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS-QVPQ 447 (537)
Q Consensus 369 ~kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~q~P~~f~Ln~LAKkIVsQaEte~~~sAfPLA~Vav~L~s-~~Pe 447 (537)
+.+++|+|+-.+|.||.+ .+..++.+|..+-. ..+ ..+.-+..-|+..+-.+ |..+.-+|.++..|.. ..|.
T Consensus 8 ~~~l~r~v~giLNKLT~~--nf~~i~~ql~~~~i--~~~--~~l~~vi~~if~kA~~e-p~f~~~YA~Lc~~L~~~~~p~ 80 (260)
T 1hu3_A 8 TQELFRKVRSILNKLTPQ--MFNQLMKQVSGLTV--DTE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVPM 80 (260)
T ss_dssp HHHHHHHHHHHHTCSSCC--CHHHHHHHHTTCCC--CSH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHhhCCHH--HHHHHHHHHHHhcC--CCH--HHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhCCc
Confidence 346788888888999853 55555666654311 122 23455556666655554 4456678888887766 3554
Q ss_pred ---------HHHHHHHHhhh
Q 009317 448 ---------VMDILLGEFHR 458 (537)
Q Consensus 448 ---------f~DILLArf~k 458 (537)
|+.+|+-+++.
T Consensus 81 ~~~~~~~~~Fr~~LL~rcq~ 100 (260)
T 1hu3_A 81 ADKPGNTVNFRKLLLNRCQK 100 (260)
T ss_dssp --------CHHHHHHHHHHH
T ss_pred ccCCccchHHHHHHHHHHHH
Confidence 56777766543
No 10
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.82 E-value=1.1e+02 Score=32.13 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=44.6
Q ss_pred HhhhcccccHHHHHHHHHHHHHHHhhhhHHhhHHHHhhHHhHHhH---------HHhhhhhcHHHHHHHHHHH
Q 009317 141 LTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMR---------REMDRKNDTVYQRKIAEAL 204 (537)
Q Consensus 141 ~~~~~~~~~~e~~r~~~~~le~~~~~e~q~~~~~~~~~~k~~~~r---------~E~~r~~d~~~qr~iae~~ 204 (537)
--+.|+.-+|+-|.+++. .-..|++=+..-++.|.|+|...+.. +.+++++|...+-.+-+.|
T Consensus 117 eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL 188 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQL 188 (390)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHH
Confidence 335666666777777666 44556677777788888998887654 7888888888877766644
No 11
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=30.34 E-value=32 Score=27.31 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=17.3
Q ss_pred hhhhhHHhhhHHHHHHHHHHHhhh
Q 009317 205 DNHLTAVQRDHELKSQIEERKIRS 228 (537)
Q Consensus 205 d~~~~~~qrd~e~ksqieer~ir~ 228 (537)
+.=|.+++||.+++ ..|+.+||+
T Consensus 9 ~~IL~VL~RD~~lr-~~ee~RIrk 31 (59)
T 3bc1_B 9 EAIMKVLQRDAALK-RAEEERVRH 31 (59)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhhHHHHh-hChHHHHHH
Confidence 34467899999999 667777763
No 12
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=28.14 E-value=62 Score=31.66 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=46.1
Q ss_pred ccccchhhhhhhcccccCchhhHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCc
Q 009317 368 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP-LCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP 446 (537)
Q Consensus 368 ~~kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~-q~P~~f~Ln~LAKkIVsQaEte~~~sAfPLA~Vav~L~s~~P 446 (537)
++..++|+|+-.+|.||.. .+..++.+|..+.... .....-.+.-+.+-|+.++-.+ |..+.-+|.++..|....|
T Consensus 32 ~~e~l~r~vkgiLNKLT~~--nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~e-p~fs~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 32 DKDEVERKMKSLLNKLTLE--MFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDE-PHWSSMYAQLCGKVVKELN 108 (284)
T ss_dssp CHHHHHHHHHHHHHSCCST--THHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 4557889999999999854 4666666666654321 1111223444455555555443 4566778888888876543
No 13
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=25.73 E-value=49 Score=29.61 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=16.9
Q ss_pred CchHHHHHHHHHHHHHhhhc
Q 009317 405 LCPQSISLATFSKKVVSRCE 424 (537)
Q Consensus 405 q~P~~f~Ln~LAKkIVsQaE 424 (537)
.+|..|++|.+.+..-.++-
T Consensus 59 KL~~LYL~DsIvrn~~~k~~ 78 (145)
T 3d9j_A 59 KVPGLYVIDSIVRQSRHQFG 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred eeehhhhhHHHHHHhhhhcC
Confidence 47778999999999999874
No 14
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=21.78 E-value=46 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=21.8
Q ss_pred cccccCCCCccCccccCCCCCCCHHHHHHHHHH
Q 009317 4 IKLELRCPQKVDGIAIDPEPDWSFDALLSELNS 36 (537)
Q Consensus 4 ~~~e~~cp~~~~~~~~dp~p~w~~~~~~~e~~~ 36 (537)
+.|-.|+|....=|.+ +|++||++|+..+.+
T Consensus 5 m~lRvrs~~G~~Ri~v--~~~~t~~~L~~~I~~ 35 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITA--TKRETAATFLKKVAK 35 (80)
T ss_dssp CCCEEECSSEEEECCC--CSSCCHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEc--CCcChHHHHHHHHHH
Confidence 5566777874333544 589999999988764
No 15
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=21.58 E-value=8.2e+02 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=12.4
Q ss_pred hhHHhhhHHHHHHHHHHHh
Q 009317 208 LTAVQRDHELKSQIEERKI 226 (537)
Q Consensus 208 ~~~~qrd~e~ksqieer~i 226 (537)
..++||+..+|++-|-+-|
T Consensus 173 ~~AL~kE~~~Rt~dE~~mi 191 (526)
T 3iyk_A 173 ATALQKEIGERTHAETVMV 191 (526)
T ss_pred HHHHHHHHHhhcHHHHHHH
Confidence 3466777777777666655
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.23 E-value=1.6e+03 Score=29.95 Aligned_cols=7 Identities=14% Similarity=0.615 Sum_probs=2.9
Q ss_pred HhHHHhh
Q 009317 183 DMRREMD 189 (537)
Q Consensus 183 ~~r~E~~ 189 (537)
++|.|+.
T Consensus 1910 ~K~~el~ 1916 (3245)
T 3vkg_A 1910 EKRDQLE 1916 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
Done!