Query 009317
Match_columns 537
No_of_seqs 142 out of 179
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 23:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hu3a_ a.118.1.14 (A:) Eukary 55.6 5.7 0.00041 34.9 4.8 82 370-458 9-100 (243)
2 d1h2vc1 a.118.1.14 (C:29-290) 16.8 71 0.0052 28.7 5.1 24 434-457 58-81 (262)
3 d1vf5c3 f.23.23.1 (C:250-286) 13.3 55 0.004 22.2 2.4 17 502-518 4-20 (37)
4 d2nsfa1 a.213.1.4 (A:1-160) Mi 10.1 78 0.0057 25.3 2.9 22 21-42 40-61 (160)
5 d1vqov1 a.2.2.1 (V:1-65) Ribos 9.5 1.2E+02 0.0087 22.1 3.4 50 149-198 12-63 (65)
6 d1q90a3 f.23.23.1 (A:248-292) 8.8 86 0.0063 21.9 2.2 17 502-518 3-19 (45)
7 d1n62a2 d.15.4.2 (A:3-81) Carb 6.9 63 0.0046 24.7 0.8 20 13-32 7-28 (79)
8 d1sa0e_ a.137.10.1 (E:) Stathm 6.7 2.4E+02 0.017 22.7 4.6 13 98-113 13-25 (138)
9 d1dgja2 d.15.4.2 (A:1-80) Alde 6.4 73 0.0053 24.4 0.9 21 13-33 7-29 (80)
10 d1r73a_ a.2.2.1 (A:) Ribosomal 6.4 2.6E+02 0.019 20.1 4.1 51 150-200 11-62 (66)
No 1
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.58 E-value=5.7 Score=34.90 Aligned_cols=82 Identities=5% Similarity=0.085 Sum_probs=53.8
Q ss_pred ccchhhhhhhcccccCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCc---
Q 009317 370 SGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP--- 446 (537)
Q Consensus 370 kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~q~P~~f~Ln~LAKkIVsQaEte~~~sAfPLA~Vav~L~s~~P--- 446 (537)
..++|+|+-.+|.||. +.+..++.+|..+... .+ -.+..++..|+..+-.+ |..+..+|.++..|...+|
T Consensus 9 ~~l~r~v~~lLNKLt~--~n~~~i~~ei~~l~~~--~~--~~l~~~v~~I~~kai~e-~~f~~~YA~Lc~~l~~~~~~~~ 81 (243)
T d1hu3a_ 9 QELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVPMA 81 (243)
T ss_dssp HHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHcc--CH--HHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHhcCccc
Confidence 3678888888999974 4555566666554222 22 34555666666666554 5678888999888887776
Q ss_pred -------cHHHHHHHHhhh
Q 009317 447 -------QVMDILLGEFHR 458 (537)
Q Consensus 447 -------ef~DILLArf~k 458 (537)
.|+..|+.+++.
T Consensus 82 ~~~~~~~~F~~~Ll~~~q~ 100 (243)
T d1hu3a_ 82 DKPGNTVNFRKLLLNRCQK 100 (243)
T ss_dssp -------CHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHH
Confidence 466677766653
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.85 E-value=71 Score=28.73 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCccHHHHHHHHhh
Q 009317 434 CGYVIVLVASQVPQVMDILLGEFH 457 (537)
Q Consensus 434 LA~Vav~L~s~~Pef~DILLArf~ 457 (537)
+|.++..+-...|+||..++-+++
T Consensus 58 yA~Lv~llN~~~~e~g~~~l~~~~ 81 (262)
T d1h2vc1 58 YTTLVGLLNARNYNFGGEFVEAMI 81 (262)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCcHHHHHHHHHHHH
Confidence 777776666778888776665554
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.29 E-value=55 Score=22.16 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHcc
Q 009317 502 SRLKSYMRLYAALIQCM 518 (537)
Q Consensus 502 kRMtGI~rLYAAIiQt~ 518 (537)
.|+.|++.++++|+.+.
T Consensus 4 ~Rv~gl~~F~~~v~laQ 20 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQ 20 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 59999999999998653
No 4
>d2nsfa1 a.213.1.4 (A:1-160) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=10.11 E-value=78 Score=25.26 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhc
Q 009317 21 PEPDWSFDALLSELNSLETRLN 42 (537)
Q Consensus 21 p~p~w~~~~~~~e~~~~~~~~~ 42 (537)
|+|.||+.+||.=|...+..+.
T Consensus 40 ~c~gWtvrdlv~Hl~~~~~~~~ 61 (160)
T d2nsfa1 40 LLEGWTRSHLIAHVAYNAIALC 61 (160)
T ss_dssp SSTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 8999999999998876665443
No 5
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=9.48 E-value=1.2e+02 Score=22.07 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHHhhhh--HHhhHHHHhhHHhHHhHHHhhhhhcHHHHH
Q 009317 149 VKEEIRNLISTLETQLISEN--EQSNSALAQVEKDRDMRREMDRKNDTVYQR 198 (537)
Q Consensus 149 ~~e~~r~~~~~le~~~~~e~--q~~~~~~~~~~k~~~~r~E~~r~~d~~~qr 198 (537)
..+|+..++..|..++.+-. |.....+...-+.+..||.|.|.++..-|+
T Consensus 12 s~~eL~~~l~elk~El~~LR~~q~~~gql~~~~~ik~~Rk~IARi~Tvl~ek 63 (65)
T d1vqov1 12 TPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEE 63 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999998875 334456667778889999999988876665
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.82 E-value=86 Score=21.93 Aligned_cols=17 Identities=6% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHcc
Q 009317 502 SRLKSYMRLYAALIQCM 518 (537)
Q Consensus 502 kRMtGI~rLYAAIiQt~ 518 (537)
.|+.|++.++++|+.+.
T Consensus 3 ~Rv~gll~F~~~v~laQ 19 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQ 19 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999998653
No 7
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=6.93 E-value=63 Score=24.68 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=15.9
Q ss_pred ccCc--cccCCCCCCCHHHHHH
Q 009317 13 KVDG--IAIDPEPDWSFDALLS 32 (537)
Q Consensus 13 ~~~~--~~~dp~p~w~~~~~~~ 32 (537)
.+|| +.+|++|+|++-++|.
T Consensus 7 ~lNG~~~~~~v~p~~~Ll~~LR 28 (79)
T d1n62a2 7 TINGHPVEALVEPRTLLIHFIR 28 (79)
T ss_dssp EETTEEEEEEECTTCBHHHHHH
T ss_pred EECCEEEEEecCCCCcHHHHHh
Confidence 3566 6778999999988875
No 8
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.74 E-value=2.4e+02 Score=22.74 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=7.0
Q ss_pred cccceecccccccCCC
Q 009317 98 AVKRFTCDALYLSESD 113 (537)
Q Consensus 98 ~~~~f~~~~~~ls~~~ 113 (537)
+|..| +|.|.+-+
T Consensus 13 ~g~~f---evil~~p~ 25 (138)
T d1sa0e_ 13 SGQSF---EVILKPPS 25 (138)
T ss_dssp SCEEE---ECCCSCCC
T ss_pred CCcce---EeeeCCCC
Confidence 55544 46676543
No 9
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=6.41 E-value=73 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=16.6
Q ss_pred ccCc--cccCCCCCCCHHHHHHH
Q 009317 13 KVDG--IAIDPEPDWSFDALLSE 33 (537)
Q Consensus 13 ~~~~--~~~dp~p~w~~~~~~~e 33 (537)
.+|| +.+|.+|++++-++|.+
T Consensus 7 ~vNG~~~~~~v~p~~~Ll~~LR~ 29 (80)
T d1dgja2 7 IVNGMARRLLVSPNDLLVDVLRS 29 (80)
T ss_dssp EETTBCCEEEECTTCBHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHhh
Confidence 3677 77889999999888753
No 10
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=6.41 E-value=2.6e+02 Score=20.12 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHhhHHHHhhHHhHHhHHHhhhhhcHHHHHHH
Q 009317 150 KEEIRNLISTLETQLISE-NEQSNSALAQVEKDRDMRREMDRKNDTVYQRKI 200 (537)
Q Consensus 150 ~e~~r~~~~~le~~~~~e-~q~~~~~~~~~~k~~~~r~E~~r~~d~~~qr~i 200 (537)
.+|+...+..+..++.+= .|.+...+..--..+..||+|.|.++..-||++
T Consensus 11 ~~eL~~~l~~l~~el~~LRfq~~~gql~~~~~i~~~Rk~IARi~Tvl~er~~ 62 (66)
T d1r73a_ 11 DEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILREREL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666665542 334444455556677899999999988888876
Done!