BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009320
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMK 85
P+ F CP+S LM DPV+VSTGQT++R S+Q + G ++ + + PN +K
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 86 QTILNWCDTSGVE 98
I WC+++G+E
Sbjct: 66 SLIALWCESNGIE 78
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAES 358
IV +G V +L+ +L S E Q+ AA AL ++A DE AI G ++ L+ L +
Sbjct: 40 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 99
Query: 359 ERTRHDSALALYHLTLIQSNRVK-LVKLNAVATLLTMVKSGES--TSRVLLILCNLAAS- 414
+ ++A AL ++ +K +V V L+ ++ S +S L N+A+
Sbjct: 100 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159
Query: 415 NEGRSAILDANGVSILVGMLRESGSDSEATRE 446
+E AI+DA GV +LV +L + +DSE +E
Sbjct: 160 DEAIKAIVDAGGVEVLVKLL--TSTDSEVQKE 189
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDENKM-AIGVLGALQPLMHALRAESERTRHD 364
V L+ +L S E+Q+ AA L +A + + AI G ++ L+ L + + +
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 365 SALALYHLTLIQSNRVK-LVKLNAVATLLTMVKSGES--TSRVLLILCNLAAS-NEGRSA 420
+A AL ++ +K +V V L+ ++ S +S L N+A+ +E A
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 421 ILDANGVSILVGMLRESGSDSEATRE 446
I+DA GV +LV +L + +DSE +E
Sbjct: 124 IVDAGGVEVLVKLL--TSTDSEVQKE 147
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N++ I R +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 447 LARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAP 506
Query: 350 LMHALRAESERTRHDSALALYHLT 373
LM L + +E T +A L+ ++
Sbjct: 507 LMELLHSRNEGTATYAAAVLFRIS 530
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 23/158 (14%)
Query: 289 NLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQ 348
NL+L N + + +P L+ +L +++Q H A G Q
Sbjct: 384 NLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQRHVAA------------------GTQQ 425
Query: 349 PLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSG-ESTSRVLL- 406
P +R E AL+ L NR+++ +LN + + ++ S E+ RV
Sbjct: 426 PYTDGVRM--EEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAG 483
Query: 407 ILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEAT 444
+LC LA E AI DA G S + L S ++ AT
Sbjct: 484 VLCELAQDKEAADAI-DAEGASAPLMELLHSRNEGTAT 520
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 287 LVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVLG 345
L NLS ++ + I +SG +P L+ +L S E +A L +L L E KMA+ +
Sbjct: 86 LHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLAD 145
Query: 346 ALQPLM 351
LQ ++
Sbjct: 146 GLQKMV 151
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 112/249 (44%), Gaps = 15/249 (6%)
Query: 225 ELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAV 284
EL+K L D + + + + +P ++SA+ + + +
Sbjct: 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 213
Query: 285 A-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIG 342
+ +L NLS ++ + I +SG +P L+++L S + HA L +L L E KMA+
Sbjct: 214 SGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273
Query: 343 VLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE-- 399
+ G LQ ++ L + + + L L Q +++ ++ L+ ++++
Sbjct: 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333
Query: 400 ----STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455
+TSRVL +L ++ +SN + AI++A G+ L L + S+ +NC+ L L
Sbjct: 334 KLLWTTSRVLKVL-SVCSSN--KPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNL 387
Query: 456 GHGNLRFKG 464
+ +G
Sbjct: 388 SDAATKQEG 396
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 111/249 (44%), Gaps = 15/249 (6%)
Query: 225 ELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAV 284
EL+K L D + + + + +P ++SA+ + + +
Sbjct: 18 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 77
Query: 285 A-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIG 342
A +L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+
Sbjct: 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137
Query: 343 VLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE-- 399
+ G LQ ++ L + + + L L Q +++ ++ L+ ++++
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 197
Query: 400 ----STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455
+TSRVL +L ++ +SN + AI++A G+ L L + S+ +NC+ L L
Sbjct: 198 KLLWTTSRVLKVL-SVCSSN--KPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNL 251
Query: 456 GHGNLRFKG 464
+ +G
Sbjct: 252 SDAATKQEG 260
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 28 EFLC-PVSGSLMFDPVVVSTGQTFDRVSVQ--VCRELGFLPDLENGFKPDFSTVIPNLAM 84
++LC +S LM +P + +G T+DR ++ + R F P + D +IPNLAM
Sbjct: 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD--QLIPNLAM 162
Query: 85 KQTI 88
K+ I
Sbjct: 163 KEVI 166
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 23 KQPPKEFLC-PVSGSLMFDPVVVSTGQTFDRVSVQ--VCRELGFLPDLENGFKPDFSTVI 79
K+ ++LC +S LM +P + +G T+DR ++ + R F P + D +I
Sbjct: 7 KREIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD--QLI 64
Query: 80 PNLAMKQTI 88
PNLAMK+ I
Sbjct: 65 PNLAMKEVI 73
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 28 EFLC-PVSGSLMFDPVVVSTGQTFDRVSVQ--VCRELGFLPDLENGFKPDFSTVIPNLAM 84
++LC +S LM +P + +G T+DR ++ + R F P + + +IPNLAM
Sbjct: 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE--QLIPNLAM 264
Query: 85 KQTI 88
K+ I
Sbjct: 265 KEVI 268
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 225 ELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAV 284
EL+K L D + + + + +P ++SA+ + + +
Sbjct: 22 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 81
Query: 285 A-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIG 342
A +L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+
Sbjct: 82 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 141
Query: 343 VLGALQPLM 351
+ G LQ ++
Sbjct: 142 LAGGLQKMV 150
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 447 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 506
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 507 LTELLHSRNEGVATYAAAVLFRMS 530
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 225 ELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAV 284
EL+K L D + + + + +P ++SA+ + + +
Sbjct: 24 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 83
Query: 285 A-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIG 342
A +L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+
Sbjct: 84 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 143
Query: 343 VLGALQPLM 351
+ G LQ ++
Sbjct: 144 LAGGLQKMV 152
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 449 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 508
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 509 LTELLHSRNEGVATYAAAVLFRMS 532
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 225 ELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAV 284
EL+K L D + + + + +P ++SA+ + + +
Sbjct: 25 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 84
Query: 285 A-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIG 342
A +L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+
Sbjct: 85 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 144
Query: 343 VLGALQPLM 351
+ G LQ ++
Sbjct: 145 LAGGLQKMV 153
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 450 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 509
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 510 LTELLHSRNEGVATYAAAVLFRMS 533
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 225 ELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAV 284
EL+K L D + + + + +P ++SA+ + + +
Sbjct: 19 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 78
Query: 285 A-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIG 342
A +L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+
Sbjct: 79 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 138
Query: 343 VLGALQPLM 351
+ G LQ ++
Sbjct: 139 LAGGLQKMV 147
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 444 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 503
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 504 LTELLHSRNEGVATYAAAVLFRMS 527
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 68 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 127
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 128 GGLQKMV 134
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 431 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 490
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 491 LTELLHSRNEGVATYAAAVLFRMS 514
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 85 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 144
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 145 GGLQKMV 151
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 448 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 507
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 508 LTELLHSRNEGVATYAAAVLFRMS 531
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 85 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 144
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 145 GGLQKMV 151
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 448 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 507
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 508 LTELLHSRNEGVATYAAAVLFRMS 531
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 68 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 127
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 128 GGLQKMV 134
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 431 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 490
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 491 LTELLHSRNEGVATYAAAVLFRMS 514
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 70 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 129
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 130 GGLQKMV 136
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 433 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 492
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 493 LTELLHSRNEGVATYAAAVLFRMS 516
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 81 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 140
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 141 GGLQKMV 147
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 444 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 503
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 504 LTELLHSRNEGVATYAAAVLFRMS 527
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 83 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 142
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 143 GGLQKMV 149
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 506 LTELLHSRNEGVATYAAAVLFRMS 529
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 72 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 131
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 132 GGLQKMV 138
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349
L+ + N+++I +PL + +L S E Q AAG L LA + E AI GA P
Sbjct: 435 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 494
Query: 350 LMHALRAESERTRHDSALALYHLT 373
L L + +E +A L+ ++
Sbjct: 495 LTELLHSRNEGVATYAAAVLFRMS 518
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 79 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 138
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 139 GGLQKMV 145
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVL 344
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+ +
Sbjct: 79 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 138
Query: 345 GALQPLM 351
G LQ ++
Sbjct: 139 GGLQKMV 145
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 28 EFLC-PVSGSLMFDPVVVSTGQTFDRVSVQ--VCRELGFLPDLENGFKPDFSTVIPNLAM 84
++LC +S LM +P + +G T+DR ++ + R F P + + +IPNLAM
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE--QLIPNLAM 61
Query: 85 KQTI 88
K+ I
Sbjct: 62 KEVI 65
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 28 EFLCPVSGSLMFDPVVVSTGQ-TFDRVSVQVCRELGFLPDLENGFKPD---FSTVIPNLA 83
EFL P+ +LM DPVV+ + + T DR + + R L L D + F + PN
Sbjct: 22 EFLDPIMSTLMCDPVVLPSSRVTVDRST--IARHL--LSDQTDPFNRSPLTMDQIRPNTE 77
Query: 84 MKQTILNW 91
+K+ I W
Sbjct: 78 LKEKIQRW 85
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQEH 323
L AL L+ S + A+ +L N++ ++ ++ +G +P L+ +L S +E+ +
Sbjct: 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157
Query: 324 AAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372
A AL ++A +E K A+ GAL+ L E+E+ + ++ AL L
Sbjct: 158 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQEH 323
L AL L+ S + A+ +L N++ ++ ++ +G +P L+ +L S +E+ +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199
Query: 324 AAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372
A AL ++A +E K A+ GAL+ L E+E+ + ++ AL L
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQEH 323
L AL L+ S + A+ +L N++ ++ ++ +G +P L+ +L S +E+ +
Sbjct: 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157
Query: 324 AAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372
A AL ++A +E K A+ GAL+ L E+E+ + ++ AL L
Sbjct: 158 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLS--LEKKNKVLIVRSGFVPLLIDVLKSGSEE 319
P L+ +R ++ ++Q A +L N++ + KV +V + VPL I +L +GS E
Sbjct: 133 PRLVEFMRE---NQPEMLQLEAAWALTNIASGTSAQTKV-VVDADAVPLFIQLLYTGSVE 188
Query: 320 SQEHAAGALFSLA 332
+E A AL ++A
Sbjct: 189 VKEQAIWALGNVA 201
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 285 ASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGV 343
+L NLS ++ + I +SG +P L+ L S + +A L +L L E K A+ +
Sbjct: 24 GTLHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRL 83
Query: 344 LGALQ 348
G LQ
Sbjct: 84 AGGLQ 88
>pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 260 CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG--------FVPLLID 311
CT LL+AL+N+ + +I + A+A VNL KK L +R+ F L+
Sbjct: 154 CTFALLAALKNVQLPEVTINEETALAE-VNL---KKKSYLNIRTHPVATSFAVFDDTLLI 209
Query: 312 VLKSGSEESQEHAAGALFSLALEDENKMA 340
V +G E EH A ++ +++E K+
Sbjct: 210 VDPTGEE---EHLATGTLTIVMDEEGKLC 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,418,151
Number of Sequences: 62578
Number of extensions: 427364
Number of successful extensions: 897
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 57
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)