Query 009320
Match_columns 537
No_of_seqs 355 out of 2663
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 23:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.6E-26 5.6E-31 269.6 32.8 279 221-501 13-314 (2102)
2 PLN03200 cellulose synthase-in 99.9 1.1E-24 2.4E-29 256.1 33.4 277 222-502 447-767 (2102)
3 KOG4224 Armadillo repeat prote 99.9 1E-25 2.3E-30 219.9 20.3 278 223-503 128-409 (550)
4 KOG4224 Armadillo repeat prote 99.9 8.2E-25 1.8E-29 213.6 20.1 276 223-503 169-450 (550)
5 KOG0166 Karyopherin (importin) 99.9 7.7E-23 1.7E-27 212.8 26.1 279 222-502 110-396 (514)
6 PF04564 U-box: U-box domain; 99.9 1.1E-23 2.3E-28 166.6 5.2 73 25-97 1-73 (73)
7 KOG0166 Karyopherin (importin) 99.9 9E-21 2E-25 197.4 24.2 289 223-518 68-366 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 6E-21 1.3E-25 185.3 15.5 287 222-517 72-370 (526)
9 COG5064 SRP1 Karyopherin (impo 99.9 2.5E-20 5.5E-25 181.0 19.1 275 223-500 116-399 (526)
10 PF05804 KAP: Kinesin-associat 99.8 2E-18 4.4E-23 189.0 27.5 295 223-521 292-682 (708)
11 PF05804 KAP: Kinesin-associat 99.8 7.8E-17 1.7E-21 176.7 28.5 264 235-514 263-530 (708)
12 KOG1048 Neural adherens juncti 99.7 9.5E-17 2.1E-21 172.3 20.3 281 220-503 232-599 (717)
13 KOG2122 Beta-catenin-binding p 99.7 5.5E-17 1.2E-21 180.0 18.7 261 240-504 317-606 (2195)
14 smart00504 Ubox Modified RING 99.7 3E-18 6.5E-23 131.9 5.7 63 28-91 1-63 (63)
15 KOG4199 Uncharacterized conser 99.7 2.2E-14 4.7E-19 139.9 25.6 274 224-499 148-444 (461)
16 KOG4199 Uncharacterized conser 99.6 1.3E-13 2.9E-18 134.4 25.6 268 231-503 117-407 (461)
17 KOG2122 Beta-catenin-binding p 99.6 2.2E-14 4.8E-19 159.7 18.5 296 223-522 237-578 (2195)
18 PF04826 Arm_2: Armadillo-like 99.5 2.4E-12 5.3E-17 126.1 21.8 192 260-457 9-205 (254)
19 PF04826 Arm_2: Armadillo-like 99.5 1.2E-11 2.6E-16 121.3 23.0 188 222-414 13-206 (254)
20 KOG1048 Neural adherens juncti 99.5 5.7E-12 1.2E-16 135.9 21.4 278 221-500 275-685 (717)
21 KOG1222 Kinesin associated pro 99.4 2E-11 4.4E-16 124.0 18.3 275 223-501 306-665 (791)
22 PF10508 Proteasom_PSMB: Prote 99.4 3.6E-10 7.8E-15 122.5 28.9 273 224-500 80-367 (503)
23 PF15227 zf-C3HC4_4: zinc fing 99.4 3.7E-13 8E-18 93.9 3.0 39 31-69 1-42 (42)
24 PF10508 Proteasom_PSMB: Prote 99.3 2.4E-09 5.2E-14 116.1 27.0 271 225-501 42-321 (503)
25 PLN03208 E3 ubiquitin-protein 99.2 6.2E-12 1.3E-16 115.5 4.3 63 21-83 11-88 (193)
26 TIGR00599 rad18 DNA repair pro 99.2 2E-11 4.3E-16 125.4 6.2 70 23-93 21-90 (397)
27 KOG1222 Kinesin associated pro 99.2 3.6E-10 7.7E-15 115.1 14.8 179 277-457 277-455 (791)
28 KOG4642 Chaperone-dependent E3 99.2 2.2E-11 4.8E-16 114.3 4.4 78 22-99 205-282 (284)
29 cd00020 ARM Armadillo/beta-cat 99.1 8.3E-10 1.8E-14 95.3 13.2 116 259-374 3-120 (120)
30 cd00020 ARM Armadillo/beta-cat 99.1 2.4E-09 5.1E-14 92.4 14.7 116 381-499 2-120 (120)
31 KOG4500 Rho/Rac GTPase guanine 99.1 7.4E-09 1.6E-13 104.6 19.3 298 223-521 89-465 (604)
32 cd00256 VATPase_H VATPase_H, r 99.1 2.6E-08 5.5E-13 104.1 23.5 273 223-497 103-423 (429)
33 KOG2973 Uncharacterized conser 99.1 4.4E-08 9.6E-13 95.5 22.5 278 221-505 3-321 (353)
34 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.9E-10 6.3E-15 78.2 3.1 38 31-69 1-39 (39)
35 KOG4500 Rho/Rac GTPase guanine 98.9 1.4E-07 3E-12 95.5 21.1 276 223-501 225-521 (604)
36 PRK09687 putative lyase; Provi 98.9 2.2E-07 4.7E-12 93.1 21.9 191 223-454 25-218 (280)
37 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.2E-07 2.6E-12 96.8 20.4 226 265-492 57-307 (312)
38 PF11789 zf-Nse: Zinc-finger o 98.9 5.5E-10 1.2E-14 83.1 1.6 44 27-70 10-55 (57)
39 PF13445 zf-RING_UBOX: RING-ty 98.9 9.3E-10 2E-14 76.7 2.2 31 31-62 1-35 (43)
40 KOG0168 Putative ubiquitin fus 98.8 3.4E-07 7.5E-12 99.3 20.6 257 221-481 167-437 (1051)
41 PF00097 zf-C3HC4: Zinc finger 98.8 3E-09 6.5E-14 74.1 3.4 39 31-69 1-41 (41)
42 PF03224 V-ATPase_H_N: V-ATPas 98.7 5.9E-07 1.3E-11 91.7 17.8 220 226-447 63-304 (312)
43 KOG0287 Postreplication repair 98.7 9.2E-09 2E-13 100.2 3.2 68 24-92 19-86 (442)
44 PF14835 zf-RING_6: zf-RING of 98.7 4.8E-09 1E-13 78.1 0.6 58 28-88 7-65 (65)
45 KOG0946 ER-Golgi vesicle-tethe 98.7 9.2E-06 2E-10 88.0 25.1 273 221-497 22-344 (970)
46 KOG2177 Predicted E3 ubiquitin 98.7 1.6E-08 3.5E-13 102.7 4.3 72 24-98 9-80 (386)
47 PRK13800 putative oxidoreducta 98.6 5.1E-06 1.1E-10 96.6 25.0 222 222-497 622-865 (897)
48 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.4E-08 5.3E-13 72.7 3.1 47 27-74 1-48 (50)
49 KOG2759 Vacuolar H+-ATPase V1 98.6 5E-06 1.1E-10 84.6 19.8 270 223-498 116-437 (442)
50 PHA02929 N1R/p28-like protein; 98.6 4.6E-08 9.9E-13 94.1 4.3 50 24-74 170-227 (238)
51 KOG0823 Predicted E3 ubiquitin 98.6 3.3E-08 7.2E-13 92.6 3.0 56 27-82 46-103 (230)
52 PRK09687 putative lyase; Provi 98.5 4.5E-06 9.7E-11 83.7 17.4 195 264-499 24-221 (280)
53 PRK13800 putative oxidoreducta 98.5 1.2E-05 2.5E-10 93.6 22.7 225 222-496 653-896 (897)
54 cd00162 RING RING-finger (Real 98.5 1.2E-07 2.7E-12 66.7 4.0 43 30-72 1-44 (45)
55 KOG0320 Predicted E3 ubiquitin 98.5 6.3E-08 1.4E-12 86.8 2.7 52 28-80 131-184 (187)
56 COG5432 RAD18 RING-finger-cont 98.5 8.3E-08 1.8E-12 91.8 3.1 69 24-93 21-89 (391)
57 PF13639 zf-RING_2: Ring finge 98.4 8.6E-08 1.9E-12 67.8 2.0 40 30-70 2-44 (44)
58 KOG2160 Armadillo/beta-catenin 98.4 4E-05 8.7E-10 77.0 21.5 181 274-457 94-282 (342)
59 smart00184 RING Ring finger. E 98.4 2.3E-07 4.9E-12 63.0 3.6 39 31-69 1-39 (39)
60 KOG2160 Armadillo/beta-catenin 98.4 2.9E-05 6.3E-10 78.0 19.5 179 316-495 95-278 (342)
61 KOG3678 SARM protein (with ste 98.4 2.4E-05 5.2E-10 80.3 18.2 263 221-502 180-455 (832)
62 KOG0317 Predicted E3 ubiquitin 98.4 2.8E-07 6.2E-12 88.9 4.0 55 23-78 234-288 (293)
63 KOG2042 Ubiquitin fusion degra 98.3 5.8E-07 1.3E-11 100.3 5.8 73 23-96 865-938 (943)
64 PF01602 Adaptin_N: Adaptin N 98.3 6.9E-05 1.5E-09 82.0 21.5 253 223-501 116-371 (526)
65 KOG4646 Uncharacterized conser 98.3 9.9E-06 2.1E-10 70.1 11.3 121 223-344 18-140 (173)
66 PF01602 Adaptin_N: Adaptin N 98.3 5E-05 1.1E-09 83.1 19.7 136 223-372 44-179 (526)
67 TIGR00570 cdk7 CDK-activating 98.2 1.5E-06 3.1E-11 86.2 6.1 53 27-79 2-59 (309)
68 PHA02926 zinc finger-like prot 98.2 7.8E-07 1.7E-11 82.8 3.7 56 24-81 166-235 (242)
69 cd00256 VATPase_H VATPase_H, r 98.2 0.00031 6.7E-09 73.8 22.0 223 223-446 55-297 (429)
70 KOG2171 Karyopherin (importin) 98.2 0.00012 2.5E-09 83.0 19.8 242 224-466 351-604 (1075)
71 PF14634 zf-RING_5: zinc-RING 98.2 1.6E-06 3.4E-11 61.2 3.1 41 30-71 1-44 (44)
72 KOG4646 Uncharacterized conser 98.2 2.3E-05 5E-10 67.9 10.6 151 343-496 14-167 (173)
73 KOG1293 Proteins containing ar 98.1 6.8E-05 1.5E-09 80.2 16.3 272 227-501 238-535 (678)
74 KOG4159 Predicted E3 ubiquitin 98.1 1.9E-06 4.2E-11 89.0 4.0 80 14-94 70-154 (398)
75 KOG1293 Proteins containing ar 98.1 0.00026 5.6E-09 75.9 19.5 152 233-384 389-544 (678)
76 KOG0168 Putative ubiquitin fus 98.1 0.00013 2.8E-09 79.9 17.3 214 218-436 208-437 (1051)
77 KOG0946 ER-Golgi vesicle-tethe 98.1 0.0005 1.1E-08 74.9 21.6 245 223-468 63-357 (970)
78 COG5369 Uncharacterized conser 98.1 7E-05 1.5E-09 78.2 13.7 261 238-498 406-740 (743)
79 COG5574 PEX10 RING-finger-cont 98.0 3.9E-06 8.4E-11 80.2 3.2 55 23-77 210-265 (271)
80 PF05536 Neurochondrin: Neuroc 98.0 0.00055 1.2E-08 74.9 19.5 232 221-457 5-261 (543)
81 COG5113 UFD2 Ubiquitin fusion 97.9 1.2E-05 2.6E-10 84.8 6.0 71 23-94 849-920 (929)
82 PTZ00429 beta-adaptin; Provisi 97.9 0.0034 7.4E-08 70.9 24.9 257 221-501 68-328 (746)
83 KOG0311 Predicted E3 ubiquitin 97.9 2.7E-06 5.9E-11 84.2 -0.2 68 24-91 39-108 (381)
84 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0021 4.6E-08 66.9 20.9 252 264-518 26-291 (371)
85 KOG2023 Nuclear transport rece 97.9 0.00033 7.2E-09 75.0 14.8 274 221-504 128-468 (885)
86 TIGR02270 conserved hypothetic 97.8 0.0035 7.5E-08 66.1 22.4 210 223-501 88-298 (410)
87 KOG2164 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 84.1 3.4 70 27-96 185-262 (513)
88 PTZ00429 beta-adaptin; Provisi 97.8 0.01 2.3E-07 67.0 26.6 250 223-500 34-286 (746)
89 PF05536 Neurochondrin: Neuroc 97.8 0.00073 1.6E-08 73.9 16.9 150 306-459 7-170 (543)
90 PF12678 zf-rbx1: RING-H2 zinc 97.8 2.3E-05 4.9E-10 61.8 3.7 43 26-70 18-73 (73)
91 KOG0297 TNF receptor-associate 97.7 2.6E-05 5.6E-10 81.7 4.4 69 22-91 15-85 (391)
92 KOG2660 Locus-specific chromos 97.7 1.7E-05 3.7E-10 78.3 2.6 66 25-91 12-82 (331)
93 KOG1789 Endocytosis protein RM 97.7 0.013 2.8E-07 66.0 24.1 252 224-481 1774-2141(2235)
94 COG5222 Uncharacterized conser 97.7 5.5E-05 1.2E-09 73.0 5.3 67 29-95 275-343 (427)
95 KOG2759 Vacuolar H+-ATPase V1 97.6 0.0062 1.4E-07 62.5 19.7 229 226-458 161-439 (442)
96 PF14664 RICTOR_N: Rapamycin-i 97.6 0.02 4.3E-07 59.8 23.5 267 224-497 28-362 (371)
97 PF00514 Arm: Armadillo/beta-c 97.6 0.00012 2.6E-09 50.7 4.9 40 252-291 1-40 (41)
98 PF00514 Arm: Armadillo/beta-c 97.6 7.5E-05 1.6E-09 51.7 3.5 39 294-332 2-40 (41)
99 PF10165 Ric8: Guanine nucleot 97.6 0.0097 2.1E-07 63.8 21.1 256 242-500 2-338 (446)
100 KOG0978 E3 ubiquitin ligase in 97.6 3E-05 6.5E-10 84.6 1.9 54 27-80 642-695 (698)
101 KOG2171 Karyopherin (importin) 97.5 0.009 1.9E-07 68.2 20.9 265 224-501 121-420 (1075)
102 KOG2973 Uncharacterized conser 97.5 0.015 3.2E-07 57.6 19.1 231 223-459 46-317 (353)
103 KOG2734 Uncharacterized conser 97.5 0.039 8.5E-07 57.1 22.6 237 221-457 125-400 (536)
104 KOG1813 Predicted E3 ubiquitin 97.5 5.9E-05 1.3E-09 73.2 2.3 56 28-85 241-296 (313)
105 KOG2734 Uncharacterized conser 97.4 0.024 5.2E-07 58.6 20.3 254 241-499 104-400 (536)
106 KOG2023 Nuclear transport rece 97.3 0.0074 1.6E-07 65.1 15.5 274 216-504 169-510 (885)
107 PF10165 Ric8: Guanine nucleot 97.3 0.034 7.3E-07 59.6 21.0 227 231-460 42-340 (446)
108 KOG0212 Uncharacterized conser 97.3 0.014 3.1E-07 61.8 17.3 267 224-500 166-445 (675)
109 KOG0212 Uncharacterized conser 97.3 0.0088 1.9E-07 63.4 15.8 276 223-502 126-409 (675)
110 PF13646 HEAT_2: HEAT repeats; 97.3 0.0012 2.6E-08 53.6 7.5 85 265-369 1-87 (88)
111 KOG0824 Predicted E3 ubiquitin 97.2 0.00023 5E-09 69.4 2.6 48 29-76 8-55 (324)
112 COG5231 VMA13 Vacuolar H+-ATPa 97.2 0.017 3.8E-07 57.3 15.4 225 273-499 159-428 (432)
113 PF12348 CLASP_N: CLASP N term 97.1 0.0024 5.3E-08 61.9 9.7 184 314-504 17-211 (228)
114 COG5152 Uncharacterized conser 97.1 0.00016 3.5E-09 65.9 1.1 46 28-74 196-241 (259)
115 PF12348 CLASP_N: CLASP N term 97.1 0.0028 6.1E-08 61.4 9.5 178 231-413 17-206 (228)
116 PF13646 HEAT_2: HEAT repeats; 97.1 0.0023 5.1E-08 51.8 7.6 85 223-328 1-87 (88)
117 COG1413 FOG: HEAT repeat [Ener 97.1 0.031 6.6E-07 57.5 17.6 163 263-459 43-211 (335)
118 KOG1062 Vesicle coat complex A 97.0 0.1 2.3E-06 57.7 21.5 66 428-503 353-419 (866)
119 KOG0802 E3 ubiquitin ligase [P 97.0 0.00032 6.9E-09 77.0 1.8 47 26-73 289-340 (543)
120 KOG3678 SARM protein (with ste 96.9 0.014 3E-07 60.6 13.0 208 232-455 233-450 (832)
121 KOG4413 26S proteasome regulat 96.9 0.1 2.2E-06 52.1 18.2 236 265-501 84-335 (524)
122 KOG3039 Uncharacterized conser 96.9 0.00052 1.1E-08 64.8 2.2 36 25-60 40-75 (303)
123 KOG4367 Predicted Zn-finger pr 96.9 0.00034 7.4E-09 70.9 1.0 32 26-57 2-33 (699)
124 smart00185 ARM Armadillo/beta- 96.9 0.0023 5E-08 43.7 5.0 40 294-333 2-41 (41)
125 TIGR02270 conserved hypothetic 96.9 0.091 2E-06 55.5 19.0 178 223-457 119-296 (410)
126 PF12861 zf-Apc11: Anaphase-pr 96.8 0.0011 2.4E-08 53.0 3.1 45 31-75 35-83 (85)
127 KOG4413 26S proteasome regulat 96.8 0.17 3.6E-06 50.7 18.5 239 237-478 187-460 (524)
128 KOG4628 Predicted E3 ubiquitin 96.7 0.001 2.2E-08 67.4 3.1 47 29-75 230-279 (348)
129 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.25 5.4E-06 56.2 22.1 241 258-500 112-407 (802)
130 smart00185 ARM Armadillo/beta- 96.7 0.0038 8.3E-08 42.6 5.1 39 254-292 3-41 (41)
131 KOG1789 Endocytosis protein RM 96.6 0.43 9.4E-06 54.4 22.0 138 236-374 1740-1883(2235)
132 KOG1242 Protein containing ada 96.5 0.15 3.3E-06 55.0 17.9 221 260-497 210-442 (569)
133 KOG0289 mRNA splicing factor [ 96.5 0.0014 3.1E-08 66.8 2.5 51 29-80 1-52 (506)
134 PF11841 DUF3361: Domain of un 96.5 0.083 1.8E-06 47.9 13.4 117 340-459 6-133 (160)
135 PF04641 Rtf2: Rtf2 RING-finge 96.5 0.0024 5.1E-08 63.4 3.7 54 25-80 110-167 (260)
136 COG5240 SEC21 Vesicle coat com 96.5 0.21 4.6E-06 53.4 17.9 255 226-500 269-556 (898)
137 KOG1002 Nucleotide excision re 96.5 0.0018 3.9E-08 67.4 2.8 56 21-76 529-588 (791)
138 COG1413 FOG: HEAT repeat [Ener 96.4 0.56 1.2E-05 48.2 21.2 182 222-455 44-240 (335)
139 KOG1517 Guanine nucleotide bin 96.4 0.13 2.9E-06 58.4 16.8 214 282-498 486-731 (1387)
140 KOG2879 Predicted E3 ubiquitin 96.3 0.0049 1.1E-07 59.5 4.3 49 26-74 237-287 (298)
141 KOG3039 Uncharacterized conser 96.2 0.0033 7.1E-08 59.6 3.0 53 27-80 220-276 (303)
142 KOG1242 Protein containing ada 96.2 0.24 5.3E-06 53.5 17.3 235 225-479 220-462 (569)
143 KOG1061 Vesicle coat complex A 96.2 0.054 1.2E-06 59.7 12.2 68 224-294 124-191 (734)
144 COG5369 Uncharacterized conser 96.2 0.029 6.2E-07 59.3 9.6 173 223-395 433-617 (743)
145 KOG2259 Uncharacterized conser 96.1 0.081 1.7E-06 57.3 12.8 249 224-498 201-474 (823)
146 PF04063 DUF383: Domain of unk 96.0 0.039 8.5E-07 52.0 9.1 121 276-396 8-157 (192)
147 PF09759 Atx10homo_assoc: Spin 96.0 0.05 1.1E-06 45.6 8.5 67 401-468 3-70 (102)
148 PF13513 HEAT_EZ: HEAT-like re 96.0 0.016 3.4E-07 42.6 5.0 55 318-372 1-55 (55)
149 KOG2979 Protein involved in DN 95.9 0.0077 1.7E-07 57.9 3.8 46 27-72 175-222 (262)
150 COG5181 HSH155 U2 snRNP splice 95.8 0.22 4.8E-06 53.6 14.4 259 223-502 606-873 (975)
151 KOG1059 Vesicle coat complex A 95.8 2.5 5.5E-05 46.7 22.3 246 224-500 147-403 (877)
152 PF13513 HEAT_EZ: HEAT-like re 95.7 0.019 4.1E-07 42.2 4.6 55 277-331 1-55 (55)
153 KOG1517 Guanine nucleotide bin 95.7 0.63 1.4E-05 53.2 18.0 220 238-460 487-735 (1387)
154 KOG1060 Vesicle coat complex A 95.7 1.3 2.8E-05 49.4 19.9 206 224-457 38-246 (968)
155 COG5243 HRD1 HRD ubiquitin lig 95.6 0.011 2.4E-07 59.2 3.7 48 26-74 285-345 (491)
156 KOG0826 Predicted E3 ubiquitin 95.6 0.0056 1.2E-07 60.6 1.5 54 21-75 293-347 (357)
157 KOG1824 TATA-binding protein-i 95.4 0.5 1.1E-05 53.4 16.0 266 225-503 9-290 (1233)
158 COG5096 Vesicle coat complex, 95.4 0.78 1.7E-05 51.6 17.5 130 270-411 62-193 (757)
159 COG5540 RING-finger-containing 95.4 0.013 2.9E-07 57.3 3.3 47 29-75 324-373 (374)
160 KOG0213 Splicing factor 3b, su 95.4 0.58 1.3E-05 51.6 15.7 258 224-502 802-1068(1172)
161 KOG2999 Regulator of Rac1, req 95.3 0.58 1.3E-05 50.0 15.0 149 306-457 85-242 (713)
162 PF04063 DUF383: Domain of unk 95.3 0.11 2.5E-06 48.8 9.2 112 319-430 10-149 (192)
163 PF09759 Atx10homo_assoc: Spin 95.2 0.026 5.5E-07 47.3 4.0 59 445-503 3-63 (102)
164 PF11841 DUF3361: Domain of un 95.2 0.47 1E-05 43.1 12.4 123 380-504 5-136 (160)
165 KOG1062 Vesicle coat complex A 95.1 1.9 4.2E-05 48.1 18.9 96 225-332 111-207 (866)
166 KOG1824 TATA-binding protein-i 95.0 0.76 1.6E-05 52.1 15.7 226 223-459 49-288 (1233)
167 KOG1241 Karyopherin (importin) 95.0 1.8 3.9E-05 48.1 18.3 258 235-504 144-440 (859)
168 KOG0804 Cytoplasmic Zn-finger 95.0 0.013 2.8E-07 60.3 2.1 49 23-74 170-222 (493)
169 COG5231 VMA13 Vacuolar H+-ATPa 95.0 2.2 4.8E-05 42.8 17.2 221 231-456 159-427 (432)
170 KOG1248 Uncharacterized conser 94.9 1.7 3.7E-05 50.5 18.6 218 273-499 664-898 (1176)
171 KOG1645 RING-finger-containing 94.9 0.015 3.3E-07 59.1 2.2 67 28-94 4-79 (463)
172 KOG1059 Vesicle coat complex A 94.8 2.8 6.1E-05 46.4 19.1 214 221-458 181-402 (877)
173 KOG1077 Vesicle coat complex A 94.8 2 4.4E-05 47.3 18.0 100 224-333 114-216 (938)
174 KOG2999 Regulator of Rac1, req 94.8 0.6 1.3E-05 49.9 13.7 157 347-504 85-247 (713)
175 COG5096 Vesicle coat complex, 94.8 3.1 6.8E-05 47.0 20.0 166 272-458 28-196 (757)
176 KOG1078 Vesicle coat complex C 94.7 2 4.3E-05 48.0 17.7 258 223-500 247-533 (865)
177 KOG2259 Uncharacterized conser 94.6 0.23 5.1E-06 53.9 10.3 220 264-500 199-440 (823)
178 PF12719 Cnd3: Nuclear condens 94.5 2.2 4.7E-05 43.2 17.1 161 228-397 34-208 (298)
179 PF05004 IFRD: Interferon-rela 94.5 3 6.4E-05 42.5 17.9 183 314-501 53-259 (309)
180 PF04078 Rcd1: Cell differenti 94.4 1.5 3.3E-05 43.0 14.7 143 358-500 8-169 (262)
181 PF12031 DUF3518: Domain of un 94.4 0.16 3.5E-06 48.8 7.8 89 400-490 140-236 (257)
182 KOG1077 Vesicle coat complex A 94.4 7.3 0.00016 43.2 20.9 249 225-491 150-425 (938)
183 KOG2817 Predicted E3 ubiquitin 94.3 0.042 9.1E-07 56.1 3.9 44 28-71 334-382 (394)
184 KOG3161 Predicted E3 ubiquitin 94.2 0.026 5.7E-07 60.4 2.2 62 27-89 10-77 (861)
185 PF08045 CDC14: Cell division 94.2 0.46 1E-05 46.7 10.6 95 237-331 107-205 (257)
186 KOG3036 Protein involved in ce 94.1 1.2 2.6E-05 43.1 12.9 146 237-383 95-256 (293)
187 KOG1241 Karyopherin (importin) 94.0 4.5 9.7E-05 45.1 18.6 232 226-461 264-534 (859)
188 KOG3113 Uncharacterized conser 93.8 0.048 1E-06 52.1 2.9 51 26-79 109-163 (293)
189 PF11698 V-ATPase_H_C: V-ATPas 93.6 0.18 3.9E-06 43.4 5.9 68 223-290 45-113 (119)
190 KOG3800 Predicted E3 ubiquitin 93.6 0.05 1.1E-06 53.2 2.8 46 30-75 2-52 (300)
191 PF11698 V-ATPase_H_C: V-ATPas 93.6 0.14 3E-06 44.1 5.1 70 426-497 44-113 (119)
192 KOG1240 Protein kinase contain 93.5 4.5 9.8E-05 47.3 18.1 260 226-501 427-727 (1431)
193 PF02891 zf-MIZ: MIZ/SP-RING z 93.4 0.086 1.9E-06 38.1 3.1 45 28-72 2-50 (50)
194 KOG1001 Helicase-like transcri 93.3 0.036 7.9E-07 61.9 1.4 46 29-75 455-501 (674)
195 KOG3036 Protein involved in ce 93.0 3.3 7.2E-05 40.1 13.8 137 361-500 95-248 (293)
196 KOG0567 HEAT repeat-containing 92.9 10 0.00022 37.3 18.7 196 261-498 65-279 (289)
197 PF05918 API5: Apoptosis inhib 92.8 12 0.00027 40.9 19.7 131 223-371 25-159 (556)
198 KOG1734 Predicted RING-contain 92.8 0.036 7.7E-07 53.4 0.4 61 21-81 217-288 (328)
199 KOG1788 Uncharacterized conser 92.8 4.7 0.0001 46.4 16.5 264 242-514 663-999 (2799)
200 KOG0825 PHD Zn-finger protein 92.7 0.028 6.1E-07 61.5 -0.5 43 31-74 126-171 (1134)
201 smart00744 RINGv The RING-vari 92.7 0.14 3E-06 36.9 3.2 41 30-70 1-49 (49)
202 PF04078 Rcd1: Cell differenti 92.3 11 0.00024 37.1 16.7 180 316-501 7-220 (262)
203 KOG4151 Myosin assembly protei 92.1 7.2 0.00016 43.8 17.0 233 253-494 494-736 (748)
204 KOG1039 Predicted E3 ubiquitin 92.0 0.11 2.4E-06 53.1 2.8 51 24-74 157-221 (344)
205 PF12755 Vac14_Fab1_bd: Vacuol 92.0 0.61 1.3E-05 38.8 6.8 67 304-371 27-93 (97)
206 PF12717 Cnd1: non-SMC mitotic 92.0 5.8 0.00013 36.8 14.2 92 235-334 2-93 (178)
207 PF11793 FANCL_C: FANCL C-term 91.9 0.029 6.4E-07 43.7 -1.1 47 28-74 2-66 (70)
208 PF13764 E3_UbLigase_R4: E3 ub 91.9 25 0.00055 40.4 21.4 211 221-435 117-385 (802)
209 KOG1785 Tyrosine kinase negati 91.8 0.071 1.5E-06 54.1 1.2 47 30-76 371-418 (563)
210 PF12755 Vac14_Fab1_bd: Vacuol 91.7 0.82 1.8E-05 38.1 7.3 65 263-330 27-93 (97)
211 PF06371 Drf_GBD: Diaphanous G 91.6 1.6 3.4E-05 40.6 10.1 108 223-332 68-186 (187)
212 KOG0213 Splicing factor 3b, su 91.6 3.2 6.8E-05 46.2 13.2 86 262-356 882-971 (1172)
213 COG5240 SEC21 Vesicle coat com 91.4 9.1 0.0002 41.5 16.0 87 242-335 248-334 (898)
214 COG5215 KAP95 Karyopherin (imp 91.3 25 0.00054 38.3 19.1 266 226-503 44-361 (858)
215 PF06371 Drf_GBD: Diaphanous G 91.3 1.1 2.3E-05 41.8 8.6 113 386-498 66-186 (187)
216 KOG2611 Neurochondrin/leucine- 91.1 16 0.00035 38.9 17.2 144 309-456 16-181 (698)
217 PF08045 CDC14: Cell division 91.0 2.1 4.6E-05 42.1 10.5 97 402-500 109-208 (257)
218 PF14447 Prok-RING_4: Prokaryo 90.7 0.15 3.2E-06 37.3 1.6 47 28-77 7-53 (55)
219 KOG0827 Predicted E3 ubiquitin 90.7 0.19 4.1E-06 51.1 2.8 48 26-75 2-57 (465)
220 COG5181 HSH155 U2 snRNP splice 90.6 4.8 0.0001 43.9 13.2 88 261-357 686-777 (975)
221 KOG1061 Vesicle coat complex A 90.5 4.1 8.8E-05 45.5 13.0 177 264-459 14-191 (734)
222 PF05004 IFRD: Interferon-rela 90.3 15 0.00032 37.4 16.4 180 273-457 53-257 (309)
223 COG5109 Uncharacterized conser 90.3 0.18 3.9E-06 49.8 2.3 43 28-70 336-383 (396)
224 PF14668 RICTOR_V: Rapamycin-i 90.0 1.9 4.1E-05 33.8 7.4 64 362-425 4-70 (73)
225 KOG0211 Protein phosphatase 2A 89.9 5.4 0.00012 45.4 13.7 171 221-399 236-411 (759)
226 KOG4692 Predicted E3 ubiquitin 89.8 0.2 4.4E-06 50.1 2.2 50 23-73 415-466 (489)
227 PF02985 HEAT: HEAT repeat; I 89.6 0.55 1.2E-05 30.0 3.5 29 264-292 1-29 (31)
228 KOG2611 Neurochondrin/leucine- 89.4 24 0.00052 37.7 16.8 145 268-412 16-181 (698)
229 KOG0828 Predicted E3 ubiquitin 89.3 0.21 4.6E-06 52.2 2.0 51 25-75 568-635 (636)
230 PF14570 zf-RING_4: RING/Ubox 89.2 0.3 6.5E-06 34.8 2.1 43 31-73 1-47 (48)
231 KOG1060 Vesicle coat complex A 89.1 14 0.00031 41.6 15.6 199 267-498 39-245 (968)
232 PF12719 Cnd3: Nuclear condens 88.9 28 0.00061 35.1 17.7 181 270-457 34-233 (298)
233 KOG1058 Vesicle coat complex C 88.8 33 0.00071 38.6 18.0 30 306-335 245-274 (948)
234 KOG1571 Predicted E3 ubiquitin 88.6 0.36 7.8E-06 48.9 3.0 51 19-73 296-346 (355)
235 PF12717 Cnd1: non-SMC mitotic 88.0 11 0.00024 34.9 12.6 67 222-293 26-93 (178)
236 PF08569 Mo25: Mo25-like; Int 87.8 17 0.00036 37.5 14.7 191 223-415 78-285 (335)
237 KOG0883 Cyclophilin type, U bo 87.4 0.43 9.2E-06 48.6 2.7 52 28-80 40-91 (518)
238 KOG1058 Vesicle coat complex C 87.4 50 0.0011 37.3 18.4 55 235-294 220-274 (948)
239 KOG4172 Predicted E3 ubiquitin 87.2 0.18 3.9E-06 36.5 -0.1 45 29-73 8-53 (62)
240 KOG1240 Protein kinase contain 87.0 11 0.00024 44.3 13.7 223 223-457 464-725 (1431)
241 KOG2274 Predicted importin 9 [ 87.0 16 0.00035 41.7 14.7 219 274-501 461-691 (1005)
242 PF02985 HEAT: HEAT repeat; I 86.6 1 2.2E-05 28.7 3.3 28 306-333 2-29 (31)
243 KOG0396 Uncharacterized conser 86.5 0.33 7.1E-06 49.3 1.3 49 28-76 330-381 (389)
244 KOG1248 Uncharacterized conser 86.2 32 0.0007 40.6 16.9 223 226-457 658-898 (1176)
245 PF07814 WAPL: Wings apart-lik 86.2 25 0.00054 36.7 15.2 238 221-468 21-310 (361)
246 KOG4362 Transcriptional regula 85.4 0.33 7.1E-06 53.5 0.8 65 27-91 20-86 (684)
247 KOG0915 Uncharacterized conser 85.0 38 0.00082 41.1 16.9 180 234-416 970-1163(1702)
248 KOG4653 Uncharacterized conser 84.8 24 0.00053 40.2 14.6 214 272-497 736-962 (982)
249 PF06025 DUF913: Domain of Unk 84.7 23 0.0005 37.1 14.1 99 300-398 101-208 (379)
250 PF08324 PUL: PUL domain; Int 84.5 9.2 0.0002 37.8 10.8 186 307-493 66-268 (268)
251 COG5175 MOT2 Transcriptional r 84.5 0.67 1.4E-05 46.3 2.4 51 26-77 13-67 (480)
252 KOG1943 Beta-tubulin folding c 84.0 75 0.0016 37.3 18.3 252 223-501 343-617 (1133)
253 KOG4151 Myosin assembly protei 83.8 5.2 0.00011 44.9 9.1 155 238-392 559-718 (748)
254 PF11707 Npa1: Ribosome 60S bi 83.0 50 0.0011 33.9 15.6 157 223-379 58-242 (330)
255 KOG2933 Uncharacterized conser 82.7 9 0.0002 38.5 9.4 139 222-371 89-231 (334)
256 KOG1814 Predicted E3 ubiquitin 82.6 1.4 3E-05 45.5 3.8 33 28-60 184-219 (445)
257 KOG0567 HEAT repeat-containing 82.5 39 0.00085 33.4 13.4 191 222-456 68-279 (289)
258 PF11864 DUF3384: Domain of un 82.3 78 0.0017 34.2 20.1 275 221-513 27-346 (464)
259 KOG4185 Predicted E3 ubiquitin 82.3 1.1 2.4E-05 45.2 3.2 63 29-91 4-77 (296)
260 COG5215 KAP95 Karyopherin (imp 82.0 84 0.0018 34.5 16.6 253 234-502 147-440 (858)
261 KOG4535 HEAT and armadillo rep 81.9 1.8 4E-05 45.6 4.5 149 224-373 436-602 (728)
262 PF05918 API5: Apoptosis inhib 81.8 22 0.00047 39.1 12.8 96 223-330 61-159 (556)
263 KOG1991 Nuclear transport rece 80.9 1.1E+02 0.0024 35.7 18.1 234 262-501 409-673 (1010)
264 PF10272 Tmpp129: Putative tra 80.4 1.2 2.6E-05 45.9 2.5 35 43-77 303-354 (358)
265 COG5209 RCD1 Uncharacterized p 80.3 5 0.00011 38.4 6.3 101 401-501 117-220 (315)
266 PF12460 MMS19_C: RNAPII trans 80.2 34 0.00074 36.3 13.7 190 305-503 190-398 (415)
267 PF05290 Baculo_IE-1: Baculovi 80.1 2.1 4.5E-05 37.3 3.4 51 26-76 78-134 (140)
268 KOG1967 DNA repair/transcripti 79.8 7.5 0.00016 44.4 8.5 143 223-368 869-1018(1030)
269 KOG0301 Phospholipase A2-activ 79.7 85 0.0018 35.0 16.1 161 232-397 555-727 (745)
270 cd03568 VHS_STAM VHS domain fa 79.0 11 0.00024 33.7 8.1 75 426-503 38-114 (144)
271 PF08324 PUL: PUL domain; Int 78.7 26 0.00056 34.6 11.6 180 268-448 68-265 (268)
272 PF05605 zf-Di19: Drought indu 78.2 2.2 4.8E-05 31.2 2.8 33 27-71 1-39 (54)
273 KOG0298 DEAD box-containing he 78.2 0.71 1.5E-05 54.0 0.1 47 23-70 1148-1195(1394)
274 PF11701 UNC45-central: Myosin 78.1 9 0.0002 34.8 7.4 99 231-330 53-156 (157)
275 KOG0301 Phospholipase A2-activ 77.7 66 0.0014 35.8 14.6 160 270-436 551-727 (745)
276 COG5219 Uncharacterized conser 77.5 1.1 2.5E-05 50.5 1.4 46 28-74 1469-1523(1525)
277 KOG4275 Predicted E3 ubiquitin 77.3 0.61 1.3E-05 45.8 -0.6 39 28-72 300-340 (350)
278 KOG1493 Anaphase-promoting com 77.2 1 2.2E-05 35.0 0.7 50 26-75 29-82 (84)
279 COG5209 RCD1 Uncharacterized p 77.2 13 0.00028 35.7 8.0 142 238-380 117-274 (315)
280 KOG0211 Protein phosphatase 2A 76.9 87 0.0019 35.9 16.0 181 265-457 439-625 (759)
281 cd03569 VHS_Hrs_Vps27p VHS dom 76.8 13 0.00028 33.2 7.8 70 223-292 43-114 (142)
282 PF14668 RICTOR_V: Rapamycin-i 76.8 14 0.0003 29.0 7.0 66 402-470 5-70 (73)
283 KOG4653 Uncharacterized conser 76.6 20 0.00044 40.8 10.6 174 315-501 738-920 (982)
284 KOG1832 HIV-1 Vpr-binding prot 75.8 14 0.0003 42.1 9.1 192 299-500 596-825 (1516)
285 PF04064 DUF384: Domain of unk 74.9 11 0.00024 28.2 5.6 53 452-505 2-55 (58)
286 PF04641 Rtf2: Rtf2 RING-finge 74.9 2.4 5.3E-05 42.0 2.9 35 28-62 34-69 (260)
287 COG5194 APC11 Component of SCF 73.6 2.5 5.4E-05 33.3 2.0 29 45-74 53-81 (88)
288 COG5627 MMS21 DNA repair prote 73.3 2.3 5E-05 40.5 2.1 55 28-82 189-247 (275)
289 KOG3665 ZYG-1-like serine/thre 73.3 63 0.0014 36.9 13.9 195 286-498 494-696 (699)
290 KOG1788 Uncharacterized conser 73.0 70 0.0015 37.6 13.5 241 229-480 475-784 (2799)
291 PF08167 RIX1: rRNA processing 72.8 35 0.00075 31.2 9.8 107 305-412 26-142 (165)
292 PF08569 Mo25: Mo25-like; Int 72.7 1.2E+02 0.0026 31.3 20.0 158 340-500 71-239 (335)
293 KOG4535 HEAT and armadillo rep 72.5 6.7 0.00015 41.6 5.4 190 321-513 408-619 (728)
294 cd03568 VHS_STAM VHS domain fa 72.2 19 0.00042 32.2 7.8 70 223-292 39-110 (144)
295 PLN02195 cellulose synthase A 72.1 2.9 6.3E-05 48.2 3.0 45 30-74 8-59 (977)
296 KOG2025 Chromosome condensatio 71.9 1.8E+02 0.0039 32.9 16.9 115 304-422 85-199 (892)
297 PF12460 MMS19_C: RNAPII trans 71.9 35 0.00075 36.3 11.0 117 217-335 266-396 (415)
298 KOG1078 Vesicle coat complex C 71.7 85 0.0018 35.7 13.8 223 265-504 247-518 (865)
299 KOG3002 Zn finger protein [Gen 71.6 3.6 7.9E-05 41.5 3.2 62 23-91 43-105 (299)
300 KOG1943 Beta-tubulin folding c 71.5 93 0.002 36.6 14.4 217 304-527 341-602 (1133)
301 PRK11088 rrmA 23S rRNA methylt 71.2 1.9 4.1E-05 43.0 1.1 27 28-54 2-31 (272)
302 PF11701 UNC45-central: Myosin 71.2 13 0.00029 33.7 6.6 143 306-454 5-156 (157)
303 PLN02189 cellulose synthase 71.1 3.2 6.9E-05 48.3 3.0 47 28-74 34-87 (1040)
304 KOG2274 Predicted importin 9 [ 71.0 2.1E+02 0.0045 33.3 18.1 152 303-458 529-690 (1005)
305 PF12031 DUF3518: Domain of un 71.0 11 0.00023 36.7 6.0 80 278-357 139-228 (257)
306 cd03561 VHS VHS domain family; 70.9 26 0.00056 30.8 8.2 70 223-292 39-112 (133)
307 PF10363 DUF2435: Protein of u 70.8 11 0.00023 31.0 5.3 68 223-292 5-72 (92)
308 KOG1820 Microtubule-associated 70.5 88 0.0019 36.2 14.2 167 224-398 256-426 (815)
309 PF14726 RTTN_N: Rotatin, an a 70.5 32 0.0007 28.6 8.1 68 261-328 28-95 (98)
310 cd03567 VHS_GGA VHS domain fam 70.0 27 0.00058 31.1 8.1 89 426-517 39-136 (139)
311 PF06025 DUF913: Domain of Unk 69.9 1.3E+02 0.0028 31.6 14.5 96 262-357 105-208 (379)
312 PF12530 DUF3730: Protein of u 69.8 1.1E+02 0.0024 29.6 15.5 134 226-373 5-150 (234)
313 PF14446 Prok-RING_1: Prokaryo 69.7 4 8.8E-05 29.8 2.2 27 28-54 5-35 (54)
314 cd03569 VHS_Hrs_Vps27p VHS dom 69.3 30 0.00065 30.9 8.3 74 425-501 41-116 (142)
315 KOG0915 Uncharacterized conser 69.0 63 0.0014 39.4 12.7 253 225-498 822-1109(1702)
316 KOG1243 Protein kinase [Genera 68.4 42 0.0009 37.5 10.6 223 256-496 286-512 (690)
317 KOG0414 Chromosome condensatio 68.2 64 0.0014 38.2 12.3 128 232-373 934-1063(1251)
318 PF07814 WAPL: Wings apart-lik 68.2 1.6E+02 0.0034 30.7 17.1 232 265-503 23-303 (361)
319 KOG3665 ZYG-1-like serine/thre 67.9 1.1E+02 0.0025 34.8 14.4 89 368-458 494-588 (699)
320 PF08167 RIX1: rRNA processing 67.7 28 0.0006 31.9 8.0 105 223-331 27-141 (165)
321 cd03567 VHS_GGA VHS domain fam 67.5 32 0.00068 30.6 8.0 70 223-292 40-116 (139)
322 PF14500 MMS19_N: Dos2-interac 67.3 1.4E+02 0.0029 29.7 17.5 212 226-457 4-237 (262)
323 PF10367 Vps39_2: Vacuolar sor 67.1 1.8 3.9E-05 36.3 -0.0 36 21-56 71-108 (109)
324 KOG4464 Signaling protein RIC- 66.4 1.8E+02 0.0039 30.7 15.4 82 234-315 110-198 (532)
325 PF14225 MOR2-PAG1_C: Cell mor 65.4 1.5E+02 0.0032 29.4 17.7 214 224-457 10-254 (262)
326 PLN02638 cellulose synthase A 65.3 4.3 9.3E-05 47.4 2.5 47 28-74 17-70 (1079)
327 KOG2956 CLIP-associating prote 65.3 2E+02 0.0043 30.9 14.6 141 306-457 331-477 (516)
328 smart00288 VHS Domain present 64.6 35 0.00076 30.0 7.7 70 223-292 39-111 (133)
329 PF06416 DUF1076: Protein of u 64.5 5.3 0.00012 33.6 2.3 55 21-76 32-93 (113)
330 KOG4265 Predicted E3 ubiquitin 63.9 4.5 9.8E-05 41.2 2.1 47 28-75 290-337 (349)
331 KOG2025 Chromosome condensatio 61.4 2.9E+02 0.0062 31.4 17.3 114 263-383 85-199 (892)
332 PLN02436 cellulose synthase A 61.0 6.6 0.00014 45.9 3.0 48 27-74 35-89 (1094)
333 KOG1812 Predicted E3 ubiquitin 60.9 9.6 0.00021 40.0 4.0 63 28-91 146-222 (384)
334 KOG2114 Vacuolar assembly/sort 60.8 4.8 0.0001 45.4 1.8 39 29-71 841-880 (933)
335 cd03561 VHS VHS domain family; 60.6 50 0.0011 29.0 8.0 73 426-501 38-114 (133)
336 KOG2930 SCF ubiquitin ligase, 60.6 6.7 0.00015 32.5 2.2 27 45-72 80-106 (114)
337 PF10363 DUF2435: Protein of u 58.7 41 0.00088 27.6 6.5 68 307-375 6-73 (92)
338 KOG4739 Uncharacterized protei 57.8 4.6 0.0001 38.9 0.9 40 39-81 15-55 (233)
339 KOG2842 Interferon-related pro 56.8 2.6E+02 0.0055 29.3 13.9 49 411-459 230-278 (427)
340 PLN02915 cellulose synthase A 56.5 7.5 0.00016 45.4 2.4 46 29-74 16-68 (1044)
341 KOG1940 Zn-finger protein [Gen 56.4 8.3 0.00018 38.3 2.4 43 28-71 158-204 (276)
342 COG5218 YCG1 Chromosome conden 56.1 3.2E+02 0.007 30.3 15.8 120 292-420 81-203 (885)
343 cd00730 rubredoxin Rubredoxin; 55.9 5.4 0.00012 28.8 0.8 14 23-36 29-42 (50)
344 COG5098 Chromosome condensatio 55.7 1.4E+02 0.003 33.7 11.5 103 347-457 301-415 (1128)
345 KOG2137 Protein kinase [Signal 54.7 98 0.0021 34.8 10.4 133 262-399 388-521 (700)
346 cd08050 TAF6 TATA Binding Prot 54.5 90 0.002 32.3 9.9 124 224-357 181-321 (343)
347 PF08746 zf-RING-like: RING-li 54.3 14 0.00031 25.6 2.7 39 31-69 1-43 (43)
348 PF00301 Rubredoxin: Rubredoxi 53.8 5.5 0.00012 28.3 0.6 14 23-36 29-42 (47)
349 COG5220 TFB3 Cdk activating ki 53.4 3.1 6.8E-05 39.7 -1.0 46 27-72 9-62 (314)
350 PF00790 VHS: VHS domain; Int 53.3 46 0.00099 29.5 6.6 70 223-292 44-118 (140)
351 KOG1820 Microtubule-associated 52.5 2.8E+02 0.006 32.3 14.0 175 312-498 261-442 (815)
352 KOG1967 DNA repair/transcripti 51.8 46 0.00099 38.4 7.4 137 262-399 866-1008(1030)
353 KOG2956 CLIP-associating prote 51.6 3.4E+02 0.0074 29.2 14.8 141 347-499 331-477 (516)
354 KOG2062 26S proteasome regulat 51.3 76 0.0016 35.9 8.8 23 222-244 519-542 (929)
355 PF14353 CpXC: CpXC protein 51.1 12 0.00026 32.6 2.4 47 28-74 1-49 (128)
356 KOG2462 C2H2-type Zn-finger pr 50.6 17 0.00036 35.9 3.4 64 22-90 155-237 (279)
357 PLN02400 cellulose synthase 50.3 8.2 0.00018 45.2 1.5 48 27-74 35-89 (1085)
358 KOG2062 26S proteasome regulat 50.3 4E+02 0.0087 30.5 14.0 103 263-379 519-623 (929)
359 PF11707 Npa1: Ribosome 60S bi 49.9 3E+02 0.0066 28.1 19.4 152 265-416 58-240 (330)
360 PLN03086 PRLI-interacting fact 49.6 18 0.00038 39.9 3.8 36 24-59 449-496 (567)
361 KOG2032 Uncharacterized conser 49.3 1.2E+02 0.0025 32.8 9.6 138 223-363 260-405 (533)
362 PF06844 DUF1244: Protein of u 48.9 11 0.00024 28.6 1.5 13 49-61 11-23 (68)
363 PF11865 DUF3385: Domain of un 48.0 1.9E+02 0.0041 26.2 9.9 140 224-371 13-154 (160)
364 cd00197 VHS_ENTH_ANTH VHS, ENT 47.9 1.1E+02 0.0024 25.7 8.0 69 427-498 39-114 (115)
365 PF12726 SEN1_N: SEN1 N termin 47.8 2.1E+02 0.0046 32.9 12.5 56 278-333 496-553 (727)
366 cd00350 rubredoxin_like Rubred 46.8 16 0.00035 23.7 1.9 10 63-72 17-26 (33)
367 KOG0314 Predicted E3 ubiquitin 46.8 9 0.00019 40.6 1.0 67 23-91 214-284 (448)
368 PF11865 DUF3385: Domain of un 46.7 1.5E+02 0.0033 26.9 9.0 140 304-455 10-155 (160)
369 KOG2137 Protein kinase [Signal 46.3 95 0.002 34.9 8.7 125 304-436 389-519 (700)
370 KOG1020 Sister chromatid cohes 46.1 2.2E+02 0.0048 35.0 12.0 123 264-393 817-952 (1692)
371 KOG2462 C2H2-type Zn-finger pr 45.8 11 0.00024 37.1 1.4 47 28-74 187-254 (279)
372 PF00790 VHS: VHS domain; Int 45.3 91 0.002 27.5 7.2 72 427-501 44-120 (140)
373 KOG0825 PHD Zn-finger protein 45.2 19 0.0004 40.5 3.1 40 22-61 90-136 (1134)
374 smart00638 LPD_N Lipoprotein N 44.8 4.7E+02 0.01 28.9 16.2 102 346-457 394-509 (574)
375 cd03565 VHS_Tom1 VHS domain fa 43.8 1.8E+02 0.0039 25.9 8.8 73 427-501 40-117 (141)
376 PF00096 zf-C2H2: Zinc finger, 43.3 7.6 0.00016 22.5 -0.1 13 29-41 1-13 (23)
377 KOG2032 Uncharacterized conser 42.9 1.6E+02 0.0035 31.8 9.4 147 273-420 268-422 (533)
378 COG1592 Rubrerythrin [Energy p 42.6 17 0.00036 33.3 2.0 25 28-72 134-158 (166)
379 PHA02825 LAP/PHD finger-like p 41.6 35 0.00076 30.9 3.8 48 27-75 7-60 (162)
380 cd03572 ENTH_epsin_related ENT 40.9 83 0.0018 27.3 5.9 70 428-500 41-120 (122)
381 PF14569 zf-UDP: Zinc-binding 40.3 25 0.00055 27.7 2.3 48 28-75 9-63 (80)
382 PF14663 RasGEF_N_2: Rapamycin 40.2 92 0.002 26.6 6.2 39 264-302 9-47 (115)
383 PF06012 DUF908: Domain of Unk 40.2 1.1E+02 0.0024 31.4 7.9 65 403-467 241-307 (329)
384 smart00288 VHS Domain present 40.1 1.1E+02 0.0024 26.8 6.8 71 427-500 39-112 (133)
385 COG5218 YCG1 Chromosome conden 40.0 1.4E+02 0.0029 33.1 8.4 105 263-374 91-196 (885)
386 PF14726 RTTN_N: Rotatin, an a 39.8 1.9E+02 0.004 24.1 7.6 85 278-362 2-88 (98)
387 PF10521 DUF2454: Protein of u 39.3 2.3E+02 0.005 28.3 9.9 69 223-291 121-202 (282)
388 KOG4718 Non-SMC (structural ma 39.2 19 0.00042 34.0 1.8 46 29-75 182-228 (235)
389 PF04499 SAPS: SIT4 phosphatas 39.1 2.3E+02 0.005 30.7 10.4 112 385-500 20-150 (475)
390 PF01347 Vitellogenin_N: Lipop 38.5 1.5E+02 0.0032 33.2 9.2 92 263-371 486-586 (618)
391 KOG3899 Uncharacterized conser 38.5 18 0.00039 35.7 1.6 28 49-76 328-367 (381)
392 KOG1815 Predicted E3 ubiquitin 38.5 32 0.00068 37.0 3.7 36 26-61 68-104 (444)
393 KOG0414 Chromosome condensatio 38.2 6.8E+02 0.015 30.2 14.1 23 442-464 766-788 (1251)
394 COG5656 SXM1 Importin, protein 36.7 7.1E+02 0.015 28.6 16.2 118 237-356 432-553 (970)
395 KOG1020 Sister chromatid cohes 36.5 5.7E+02 0.012 31.8 13.4 105 223-335 818-923 (1692)
396 cd00729 rubredoxin_SM Rubredox 36.4 28 0.0006 22.8 1.8 9 64-72 19-27 (34)
397 PF08216 CTNNBL: Catenin-beta- 35.6 47 0.001 28.2 3.4 42 280-321 63-104 (108)
398 COG4888 Uncharacterized Zn rib 35.3 29 0.00063 28.8 2.1 79 1-96 1-82 (104)
399 PF13894 zf-C2H2_4: C2H2-type 35.3 13 0.00029 21.2 0.1 13 29-41 1-13 (24)
400 PF12231 Rif1_N: Rap1-interact 34.3 4.7E+02 0.01 27.3 11.6 138 358-498 59-203 (372)
401 COG5098 Chromosome condensatio 34.1 1.3E+02 0.0029 33.8 7.4 109 265-374 301-415 (1128)
402 PF05883 Baculo_RING: Baculovi 34.0 23 0.0005 31.1 1.4 43 28-71 26-77 (134)
403 PF10521 DUF2454: Protein of u 33.2 4.2E+02 0.009 26.4 10.6 69 264-332 120-202 (282)
404 COG2176 PolC DNA polymerase II 33.2 32 0.0007 40.8 2.8 40 24-75 910-951 (1444)
405 PF12530 DUF3730: Protein of u 32.7 4.6E+02 0.01 25.3 17.5 133 266-412 3-150 (234)
406 PF14631 FancD2: Fanconi anaem 32.0 4.1E+02 0.0088 33.2 11.9 133 271-409 443-577 (1426)
407 PF12906 RINGv: RING-variant d 31.9 28 0.0006 24.6 1.3 39 31-69 1-47 (47)
408 PLN03205 ATR interacting prote 30.9 5.1E+02 0.011 27.4 10.5 110 346-457 324-446 (652)
409 PHA00733 hypothetical protein 30.8 91 0.002 27.3 4.7 17 28-44 40-56 (128)
410 PRK13908 putative recombinatio 30.6 40 0.00086 31.6 2.4 42 22-63 132-184 (204)
411 COG3813 Uncharacterized protei 30.0 48 0.001 25.7 2.3 39 43-84 24-62 (84)
412 KOG1941 Acetylcholine receptor 29.8 27 0.00058 36.1 1.3 43 28-70 365-412 (518)
413 PRK14707 hypothetical protein; 29.7 1.4E+03 0.03 30.0 20.1 115 225-340 377-495 (2710)
414 PF13251 DUF4042: Domain of un 29.5 4.7E+02 0.01 24.4 9.9 110 265-374 42-174 (182)
415 PF08216 CTNNBL: Catenin-beta- 29.2 63 0.0014 27.4 3.2 43 238-281 63-105 (108)
416 PF04388 Hamartin: Hamartin pr 29.1 7.1E+02 0.015 28.3 12.6 131 223-373 6-139 (668)
417 COG5236 Uncharacterized conser 29.1 53 0.0011 33.4 3.2 48 26-73 59-107 (493)
418 COG3492 Uncharacterized protei 29.0 28 0.00061 28.1 1.0 13 49-61 42-54 (104)
419 PRK04023 DNA polymerase II lar 28.8 51 0.0011 38.5 3.3 70 23-97 620-696 (1121)
420 KOG1991 Nuclear transport rece 28.6 1E+03 0.023 28.1 16.9 219 233-459 430-673 (1010)
421 PHA03096 p28-like protein; Pro 28.5 36 0.00078 34.2 1.9 43 29-71 179-231 (284)
422 PF12660 zf-TFIIIC: Putative z 28.3 14 0.00031 30.7 -0.8 45 29-73 15-65 (99)
423 KOG0392 SNF2 family DNA-depend 28.2 1E+03 0.022 29.2 13.4 224 222-457 78-325 (1549)
424 PF08389 Xpo1: Exportin 1-like 28.2 3.8E+02 0.0083 22.9 8.6 63 345-408 82-148 (148)
425 PF00412 LIM: LIM domain; Int 28.0 48 0.001 23.9 2.1 32 26-57 24-56 (58)
426 PF08389 Xpo1: Exportin 1-like 27.4 3E+02 0.0064 23.7 7.6 103 222-328 27-148 (148)
427 PF06012 DUF908: Domain of Unk 27.3 3.1E+02 0.0068 28.0 8.7 73 360-432 237-323 (329)
428 KOG0314 Predicted E3 ubiquitin 27.2 29 0.00062 36.9 1.0 79 15-93 293-375 (448)
429 PRK14892 putative transcriptio 27.0 50 0.0011 27.5 2.2 41 21-75 14-54 (99)
430 PF11791 Aconitase_B_N: Aconit 27.0 1E+02 0.0022 27.8 4.3 23 306-328 96-118 (154)
431 PF08506 Cse1: Cse1; InterPro 26.9 7.4E+02 0.016 25.9 12.1 129 233-369 223-370 (370)
432 PF12830 Nipped-B_C: Sister ch 26.9 1.9E+02 0.0041 26.9 6.4 65 223-292 10-74 (187)
433 smart00734 ZnF_Rad18 Rad18-lik 26.8 29 0.00063 21.3 0.6 9 30-38 3-11 (26)
434 cd00197 VHS_ENTH_ANTH VHS, ENT 26.7 3.8E+02 0.0083 22.4 8.0 68 223-290 39-113 (115)
435 PHA02862 5L protein; Provision 26.4 58 0.0013 29.0 2.6 45 30-75 4-54 (156)
436 PF04821 TIMELESS: Timeless pr 25.7 6.6E+02 0.014 24.8 12.6 58 223-292 15-72 (266)
437 KOG1243 Protein kinase [Genera 25.6 3.9E+02 0.0084 30.2 9.2 71 260-332 327-397 (690)
438 PF14663 RasGEF_N_2: Rapamycin 25.2 4E+02 0.0087 22.6 7.6 40 346-385 9-48 (115)
439 PF14500 MMS19_N: Dos2-interac 25.2 6.7E+02 0.015 24.8 15.8 216 267-503 3-241 (262)
440 PRK14559 putative protein seri 25.1 59 0.0013 36.6 3.1 44 29-81 2-46 (645)
441 KOG2933 Uncharacterized conser 25.0 3.4E+02 0.0073 27.7 7.9 102 268-374 93-199 (334)
442 KOG2549 Transcription initiati 25.0 8.1E+02 0.018 27.0 11.2 124 224-357 210-351 (576)
443 PF07191 zinc-ribbons_6: zinc- 24.8 4.6 9.9E-05 31.2 -3.9 41 28-74 1-41 (70)
444 KOG2199 Signal transducing ada 24.3 2.4E+02 0.0051 29.6 6.8 79 425-506 45-125 (462)
445 COG1773 Rubredoxin [Energy pro 24.2 37 0.0008 25.0 0.8 14 23-36 31-44 (55)
446 PF09162 Tap-RNA_bind: Tap, RN 24.1 53 0.0012 26.7 1.8 20 42-61 10-29 (88)
447 PF06676 DUF1178: Protein of u 23.7 88 0.0019 28.1 3.3 33 45-82 9-52 (148)
448 cd03565 VHS_Tom1 VHS domain fa 23.6 4.8E+02 0.01 23.1 8.1 70 223-292 40-115 (141)
449 PF07800 DUF1644: Protein of u 23.3 36 0.00079 30.8 0.8 21 27-47 1-21 (162)
450 PRK14707 hypothetical protein; 23.1 1.8E+03 0.039 29.0 20.1 119 275-396 302-425 (2710)
451 KOG4337 Microsomal triglycerid 22.7 1.1E+03 0.025 26.6 22.1 229 261-510 357-605 (896)
452 KOG4231 Intracellular membrane 22.2 84 0.0018 33.9 3.3 60 440-499 340-399 (763)
453 KOG2487 RNA polymerase II tran 22.0 33 0.00072 33.7 0.3 15 28-42 273-287 (314)
454 KOG1992 Nuclear export recepto 22.0 5.2E+02 0.011 30.0 9.4 38 264-301 499-537 (960)
455 KOG1832 HIV-1 Vpr-binding prot 21.6 5E+02 0.011 30.4 9.1 118 358-479 366-489 (1516)
456 PRK01343 zinc-binding protein; 21.5 73 0.0016 23.7 1.9 13 28-40 9-21 (57)
457 PF07923 N1221: N1221-like pro 21.5 1.8E+02 0.0038 29.3 5.5 53 344-396 59-126 (293)
458 PF02146 SIR2: Sir2 family; I 21.4 1.1E+02 0.0023 28.2 3.6 30 45-74 110-140 (178)
459 KOG4231 Intracellular membrane 21.4 1.8E+02 0.0038 31.6 5.4 67 267-333 332-399 (763)
460 PF12874 zf-met: Zinc-finger o 21.0 31 0.00067 20.3 -0.1 14 29-42 1-14 (25)
461 PF09723 Zn-ribbon_8: Zinc rib 20.7 20 0.00043 24.7 -1.1 25 45-71 10-34 (42)
462 KOG4464 Signaling protein RIC- 20.0 1.1E+03 0.023 25.2 13.1 130 307-436 48-198 (532)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=2.6e-26 Score=269.62 Aligned_cols=279 Identities=24% Similarity=0.251 Sum_probs=247.5
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 009320 221 PEEEELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
..+..+|+.|.++ +++.++.|+..|+.+++.++++|..+.+ .|+||.|+.+|.+++..++.+|+.+|.+|+.+++++
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 3467899999866 7899999999999999999999999985 999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC---cchhhHHh-hcCchHHHHHHhccCCH---HHHHHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE---DENKMAIG-VLGALQPLMHALRAESE---RTRHDSALALY 370 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~I~-~~g~l~~Lv~lL~~~~~---~~~~~A~~aL~ 370 (537)
..|+..|++++|+.+|++++.+.|+.|+.+|++|+.+ +.++..|+ ..|+++.|+.+|++++. .++..++.+|+
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 44565655 68999999999999742 25567789999
Q ss_pred HhhcChhhHH-HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHH
Q 009320 371 HLTLIQSNRV-KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRE 446 (537)
Q Consensus 371 nLs~~~~n~~-~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e 446 (537)
||+...+++. .++++|+|+.|+++|.+++ .+..|+.+|.+++.. ++++..+++.|+|+.|+++|++ ..+..+++
T Consensus 173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s--g~~~~VRE 250 (2102)
T PLN03200 173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ--GNEVSVRA 250 (2102)
T ss_pred HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc--CCChHHHH
Confidence 9999999875 5579999999999998664 567799999888865 6799999999999999999976 14568999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCC---------HHHHHHHHHHHHHhhcCC
Q 009320 447 NCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGS---------QRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 447 ~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s---------~~~k~~A~~lL~~L~~~~ 501 (537)
+|+++|.+||.++.+.+..+.+.|+++.|++++...+ ...+++|.++|.++++..
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 9999999999998889999999999999999987544 346999999999999864
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=1.1e-24 Score=256.06 Aligned_cols=277 Identities=21% Similarity=0.179 Sum_probs=243.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.|+++|.+++...|..|++.|++++..+++++..+.++|+||.|+++|.+++..++++|+++|.|++.++++...++
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999876666655
Q ss_pred -hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh-------------------------------------hHH-h
Q 009320 302 -RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK-------------------------------------MAI-G 342 (537)
Q Consensus 302 -~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-------------------------------------~~I-~ 342 (537)
+.|++++|+++|.+++.+.++.|+++|++|+...++. ... .
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~ 606 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA 606 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh
Confidence 7899999999999999999999999999996332211 011 1
Q ss_pred hcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc--Chhh
Q 009320 343 VLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA--SNEG 417 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~--~~~~ 417 (537)
..|+++.|+++|+++++..++.|+++|.+++. ..+++..++..|+|++|+.+|..++ .+..++++|.+|+. ..++
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q 686 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENR 686 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHH
Confidence 35899999999999999999999999999986 5677888999999999999998655 56669999999985 4456
Q ss_pred HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 418 RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 418 r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
+..+++.|+|+.|+++|.. .+.++++.|+.+|.+|+.+.+. +..+.+.|+++.|++++++++++.|++|+++|..|
T Consensus 687 ~~~~v~~GaV~pL~~LL~~---~d~~v~e~Al~ALanLl~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 687 KVSYAAEDAIKPLIKLAKS---SSIEVAEQAVCALANLLSDPEV-AAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhC---CChHHHHHHHHHHHHHHcCchH-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7788999999999999988 7899999999999999998864 45556789999999999999999999999999888
Q ss_pred hcCCC
Q 009320 498 KGRED 502 (537)
Q Consensus 498 ~~~~~ 502 (537)
....+
T Consensus 763 ~~~~~ 767 (2102)
T PLN03200 763 LKHFP 767 (2102)
T ss_pred HhCCC
Confidence 87764
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-25 Score=219.85 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=255.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.|+.....+..++|..|+.+|.+|+.- +.+|..|...|++.+|.++-++++..+|.++..+|.|+....+|+..++.
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 45677777778888999999999999965 78999999999999999988899999999999999999999999999999
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcC--chHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG--ALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g--~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
+|++|.||.++++++.++|..++.+|.+++.+...|..+.+.+ .++.||+++++++++++..|..||.||++..+-+.
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 9999999999999999999999999999999999999999765 99999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 381 KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.++++|.+|.++++|+++. ..-..+.++.|++-.+-+...|.+.|.+.+|+++|+. .++++++.+|+.+||+|+..
T Consensus 287 eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred HHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhh
Confidence 9999999999999998765 3444678899999999998999999999999999998 35778999999999999997
Q ss_pred ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 459 NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 459 ~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
.+..+..+.+.|+++.|.+++.++.-.+|..-..++..|+-...+
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 777888899999999999999999999999999999998876443
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.2e-25 Score=213.60 Aligned_cols=276 Identities=21% Similarity=0.267 Sum_probs=252.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.+++.-++.+..+|..|...|.+++. ..++|+.+..+|++|+|+.++++++.++|..++.+|.|++-+..+++.+++
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 3556664488999999999999999995 578999999999999999999999999999999999999999999999998
Q ss_pred cC--CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 303 SG--FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 303 ~g--~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
.+ .|+.||.++.++++.++-.|..+|.+|+.+.++...|.+.|.+|.++++|+++........+.+++|++.++-|-.
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 77 9999999999999999999999999999999999999999999999999998877888888999999999999999
Q ss_pred HHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 381 KLVKLNAVATLLTMVKSGE---STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
.++++|++.+||++|..++ .+..|..+|+||+. ...++..|.+.|+|+.+.+++.+ ++-.+++..-+++..|+
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIAQLA 404 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHHHHH
Confidence 9999999999999997543 56679999999998 55789999999999999999998 78889998889998888
Q ss_pred cCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 457 HGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 457 ~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
... ..+..+.+.|.++.|+.+..+.+.+++-+|+..|-+|++.-+.
T Consensus 405 l~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 405 LND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred hcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 754 4677888999999999999999999999999999999987444
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.7e-23 Score=212.80 Aligned_cols=279 Identities=17% Similarity=0.192 Sum_probs=245.1
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
-++.+|++|. ..++..|..|+++|.+++....+....+.++|++|.++.++.+++..+++.|+++|.|++.+ +..+..
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 3689999995 66799999999999999999999999999999999999999999999999999999999996 567888
Q ss_pred HHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-
Q 009320 300 IVRSGFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQ- 376 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~- 376 (537)
+.+.|++++|+.++..... ....+++++|.||+...+....+. ...++|.|..++.+.++.+..+|+|||.+|+..+
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 8899999999999987764 678899999999998875444444 3678999999999999999999999999999754
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 377 SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 377 ~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
+.-..++++|+++.|+++|...+ +..-|+.++-|++... +..+.+++.|+++.|..+|... ....++..|++++.
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s--~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS--PKESIKKEACWTIS 347 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 55566668999999999998654 5556999999998766 4567788999999999999862 34558899999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
|++.++....+.+.++|+++.|+.+++.++-++|+.|++++.++.....
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9999998888888999999999999999999999999999999997743
No 6
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.89 E-value=1.1e-23 Score=166.59 Aligned_cols=73 Identities=36% Similarity=0.615 Sum_probs=64.2
Q ss_pred CCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
+|++|+||||+++|+|||++++||||||.+|++|+..++..||.|++++...+++||+.||+.|++|+.+|.+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 6999999999999999999999999999999999999778999999999999999999999999999999874
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9e-21 Score=197.42 Aligned_cols=289 Identities=19% Similarity=0.220 Sum_probs=242.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.+.++..+.|++...+..+...++.+.-.. ...-..+...|+||.|+.+|. ..++.++.+|+++|.|++.. .+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 467888888999999999999888775322 222333445599999999997 55699999999999999995 456677
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCH-HHHHHHHHHHHHhhcChh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESE-RTRHDSALALYHLTLIQS 377 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~ 377 (537)
++++|++|.++++|.+++.++++.|+++|.|++.+. ..|..+...|++++|+.++...+. ...+++.|+|.|||....
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 789999999999999999999999999999999775 578888899999999999998765 688999999999998765
Q ss_pred hHHHHHh-cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 378 NRVKLVK-LNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 378 n~~~iv~-~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
-...+.. ..++|.|..++...+ +...|+++|.+|+..+ +..+.+++.|+++.|+++|.. .+..++..|+.++.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~---~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH---SSPKVVTPALRAIG 304 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC---CCcccccHHHhhcc
Confidence 4444333 678999999997554 5677999999999655 788889999999999999988 77888999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
|++.+++...+.+.+.|+++.|..++. +....+|+.|++++.++.....+ ..+.|+++|-+
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~----qiqaVida~l~ 366 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE----QIQAVIDANLI 366 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH----HHHHHHHcccH
Confidence 999999999999999999999999988 55677999999999999987443 45677777643
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=6e-21 Score=185.27 Aligned_cols=287 Identities=19% Similarity=0.235 Sum_probs=240.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccH-H
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNK-V 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k-~ 298 (537)
+.+.|...|-|++.+.|..|+...+.+ +++....-+.++.+|++|.++.++. ....-.+-+|+++|.|++....+. +
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 467889999999999999998887754 5655556677889999999999994 456678889999999999966554 4
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCH--HHHHHHHHHHHHhhcC
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESE--RTRHDSALALYHLTLI 375 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~--~~~~~A~~aL~nLs~~ 375 (537)
.+++.|+||.++.+|.+++.++++.++++|.|++.+.. .|..+.+.|++++|+.+|.+... ...+++.|+|.|||..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 45689999999999999999999999999999998765 77888899999999999987744 6789999999999974
Q ss_pred h--h-hHHHHHhcCcHHHHHHHhc--CCchHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 376 Q--S-NRVKLVKLNAVATLLTMVK--SGESTSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 376 ~--~-n~~~iv~~g~v~~Lv~lL~--~~~~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
. . +-..| ..++|.|.+++. +.++...|+++|..|+..+ +...++++.|.-..|+++|.+ .+..++..|+
T Consensus 232 knP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~---~sa~iqtPal 306 (526)
T COG5064 232 KNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH---ESAKIQTPAL 306 (526)
T ss_pred CCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC---ccccccCHHH
Confidence 2 2 22222 236888888886 4456777999999999987 677888999999999999998 7889999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGG 517 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~ 517 (537)
+...|+..++....+++...|+++.+..++.+.-+++|+.|++.+.++...- ....+.|+++.-
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn----teqiqavid~nl 370 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN----TEQIQAVIDANL 370 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC----HHHHHHHHhccc
Confidence 9999999998888888899999999999999999999999999999998773 334566666543
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=2.5e-20 Score=180.95 Aligned_cols=275 Identities=14% Similarity=0.126 Sum_probs=234.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
++++|+++ .......+-+|++.|.+++.........+.++|++|.++.+|.++..++++.++++|.|++.+ +..+..+
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v 195 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH
Confidence 68999999 456666788999999999977777777788999999999999999999999999999999996 5678888
Q ss_pred HhcCCHHHHHHHHccCCH--HHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh
Q 009320 301 VRSGFVPLLIDVLKSGSE--ESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~--e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 377 (537)
.+.|++++|+.+|.+... ....++.++|.||+........-. -..++|.|.+++.+.++++...|+|||..|+..+.
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 899999999999987654 677899999999997543222111 24578999999999999999999999999998665
Q ss_pred h-HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 378 N-RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 378 n-~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
- ...+++.|..+.|+++|...+ ++.-++..+.|+....+ .-..+++.|+++.+-.+|++ .-+.++..|+|++.
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiS 352 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS---PKENIRKEACWTIS 352 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC---hhhhhhhhhheeec
Confidence 4 455668999999999998654 55569999999987664 45667789999999999987 55689999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
|+..++....+.+.+++.+|.|+.++...+-.+|+.|++++.+....
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999988888889999999999999999999999999999887754
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=2e-18 Score=189.05 Aligned_cols=295 Identities=19% Similarity=0.266 Sum_probs=241.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|++++.+....++.+|++|+- ..+++..+.+.|+|+.|++++.+++.+++..++.+|.||+.+++++..|++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 6789999999999999999999999995 457899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.|.+|.|+.+|..+ ..+..+..+|++||.++++|..+...++++.|+++|-++ .+++...+++++.||+.++.|...
T Consensus 371 ~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaql 448 (708)
T PF05804_consen 371 LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQL 448 (708)
T ss_pred CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHH
Confidence 99999999999855 466778999999999999999999889999999987665 555667788888899999999988
Q ss_pred HHhcCcHHHHHHHhc-----------------C--------------------C---chHHHHHHHHHHHh---------
Q 009320 382 LVKLNAVATLLTMVK-----------------S--------------------G---ESTSRVLLILCNLA--------- 412 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~-----------------~--------------------~---~~~~~al~~L~nLa--------- 412 (537)
|.+.|+++.|++... + + +....++++|.||.
T Consensus 449 m~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~l 528 (708)
T PF05804_consen 449 MCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQL 528 (708)
T ss_pred HHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHH
Confidence 888888888775211 0 0 01122555555554
Q ss_pred -----------------------------------cChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 413 -----------------------------------ASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 413 -----------------------------------~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
..++....+.+.|.++.|+++|... .++++..-..+.+++.+..
T Consensus 529 l~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k-qeDdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 529 LQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK-QEDDEIVLQILYVFYQLLF 607 (708)
T ss_pred HHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh-CchHHHHHHHHHHHHHHHc
Confidence 3334444456788899999999883 3678889999999999999
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC-----------cchhhhhhhhcCCcccc
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD-----------EDVDWEGVLDSGGLTRS 521 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~-----------~~~d~~~v~~~g~~~~~ 521 (537)
+.+....++.+.+++..|+.++++.++.+++.|..+|-.+.+...+= -.-+|-++++..+.+-.
T Consensus 608 h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~~~~ 682 (708)
T PF05804_consen 608 HEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQLDDN 682 (708)
T ss_pred ChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhccccccc
Confidence 98777777788899999999999999999999999999998774321 23367777765444444
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.78 E-value=7.8e-17 Score=176.69 Aligned_cols=264 Identities=21% Similarity=0.263 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK 314 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~ 314 (537)
......++..|.|++. +......+.+.|+|+.|+++|.+++.++...++..|.+|+...+||..|.+.|+|++|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3444567778999994 678888888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHH
Q 009320 315 SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTM 394 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~l 394 (537)
+++.+++..+..+|+|||.+++.|..+.+.|++|.|+.+|.+++ .+..++.+|++||..++++..+...++++.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999998653 4567899999999999999999999999999998
Q ss_pred hcCC---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCc
Q 009320 395 VKSG---ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARA 471 (537)
Q Consensus 395 L~~~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~ 471 (537)
|... .....+++.+.|||..+.+.+.+.+.++++.|++..-. ..+ ...+.++.|++.++...+..+. +.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~--~~D----~lLlKlIRNiS~h~~~~k~~f~--~~ 491 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK--TRD----PLLLKLIRNISQHDGPLKELFV--DF 491 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh--ccc----HHHHHHHHHHHhcCchHHHHHH--HH
Confidence 7543 23445789999999999999999999999999986654 122 2245789999998755555543 47
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHhhcCCCCCcchhhhhhhh
Q 009320 472 AEVLREVEERG-SQRAKEKAKRILEMLKGREDDDEDVDWEGVLD 514 (537)
Q Consensus 472 i~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~ 514 (537)
+..|+.++..+ ++...-.+..+|.+|.-.. +||..+++
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~-----ld~~~ll~ 530 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPD-----LDWAQLLQ 530 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCC-----cCHHHHHH
Confidence 78888876654 5777888888888887642 36877775
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=9.5e-17 Score=172.31 Aligned_cols=281 Identities=22% Similarity=0.235 Sum_probs=227.3
Q ss_pred ChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC---Ccc
Q 009320 220 APEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE---KKN 296 (537)
Q Consensus 220 ~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~---~~~ 296 (537)
+.+.++.+++|.+.++..|..|...|..+++.+...+..+.+-|+|+.|+.+|.+.+.+++..|+++|.||... ++|
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999983 369
Q ss_pred HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--------------CHHH
Q 009320 297 KVLIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--------------SERT 361 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--------------~~~~ 361 (537)
|..|.+.++|+.++.+|+. ++.++++.++++|+||+.++..|..|+.. ++..|..-+-.. +..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999999987 78999999999999999998888877743 344454443221 1346
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHh-cCcHHHHHHHhc--------CCchHHHHHHHHHHHhcChh-----h---------
Q 009320 362 RHDSALALYHLTL-IQSNRVKLVK-LNAVATLLTMVK--------SGESTSRVLLILCNLAASNE-----G--------- 417 (537)
Q Consensus 362 ~~~A~~aL~nLs~-~~~n~~~iv~-~g~v~~Lv~lL~--------~~~~~~~al~~L~nLa~~~~-----~--------- 417 (537)
..++..+|+|+++ ..+.|.+|-+ .|.|..|+..++ +....+.|+.+|.||+..-+ .
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 7889999999998 7789999998 699999999886 23467889999999974222 0
Q ss_pred ------------------HHH----------------------HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 418 ------------------RSA----------------------ILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 418 ------------------r~~----------------------i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+.. ++...+|..-..+|.. ...+.+.|.++++|-||+.
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHHHhhhhHhhhhc
Confidence 000 1111123333444543 3578899999999999998
Q ss_pred CC----hHHHH-HHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 458 GN----LRFKG-LAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 458 ~~----~~~~~-~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
+. ...+. ++.++.+.+.|++|++.+++++.+.++.+|++|+.+...
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn 599 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN 599 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence 54 22334 447889999999999999999999999999999988543
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.74 E-value=5.5e-17 Score=180.00 Aligned_cols=261 Identities=20% Similarity=0.220 Sum_probs=226.4
Q ss_pred HHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC------------CHHHHHHHHHHHHHhcC-CCccHHHHHh-cCC
Q 009320 240 EGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR------------YSIVQTNAVASLVNLSL-EKKNKVLIVR-SGF 305 (537)
Q Consensus 240 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~------------~~~v~~~a~~~L~nLs~-~~~~k~~i~~-~g~ 305 (537)
.|+..|-.+++ ++++|..+.+-|++.++..|++-+ +..++..+..+|.||.. +..||..+.. .|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 67778888886 589999999999999999988521 23688999999999999 5578988884 799
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHH-hccCCHHHHHHHHHHHHHhhc-ChhhHHH
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHA-LRAESERTRHDSALALYHLTL-IQSNRVK 381 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~l-L~~~~~~~~~~A~~aL~nLs~-~~~n~~~ 381 (537)
+.+||..|.+...++....+.+|+||++..+ .|..+-+.|-+..|+.. |+...+...+..+.|||||+. ..+|+..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999999888999999999999998865 56666678989898887 555567788999999999987 5789999
Q ss_pred HHh-cCcHHHHHHHhcCC------chHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 382 LVK-LNAVATLLTMVKSG------ESTSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 382 iv~-~g~v~~Lv~lL~~~------~~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
|.. .|++.+||.+|.-. .+.+.+-+||.|.+. +++.|+.+.+++++..|+..|++ .+-.++.++++
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS---~SLTiVSNaCG 552 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS---HSLTIVSNACG 552 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh---cceEEeecchh
Confidence 997 79999999999632 256668888988764 67889999999999999999998 78889999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
+||||...+..-++++++.|+++.|..|+++.+..+-+-++..|++|-.+++-.
T Consensus 553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 999999998889999999999999999999999999999999999999888543
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.73 E-value=3e-18 Score=131.91 Aligned_cols=63 Identities=38% Similarity=0.657 Sum_probs=59.9
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
+|.||||+++|+|||+++|||+|||.||.+|++. +..||.|++++...+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 56899999999989999999999999998
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.2e-14 Score=139.86 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=230.9
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCc-----
Q 009320 224 EELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKK----- 295 (537)
Q Consensus 224 ~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~----- 295 (537)
..++..| ++++.+.-...+..++.-+-.++.+|+.+.+.++.+++...|.. +...+..+.++++..|..+++
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 4566666 56777777888888998888899999999999999999977653 444688889999998887654
Q ss_pred -----cHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCH----HHHHHH
Q 009320 296 -----NKVLIVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESE----RTRHDS 365 (537)
Q Consensus 296 -----~k~~i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~----~~~~~A 365 (537)
....|+..|++..|+..|..+ ++.+...++.+|..|+..++....|.+.|++..|++++.+.+. ...+.+
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ 307 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTC 307 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHH
Confidence 345677788999999999875 5788889999999999999999999999999999999988533 356788
Q ss_pred HHHHHHhhcChhhHHHHHhcCcHHHHHHHhc----CCchHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCC
Q 009320 366 ALALYHLTLIQSNRVKLVKLNAVATLLTMVK----SGESTSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSD 440 (537)
Q Consensus 366 ~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~----~~~~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~ 440 (537)
+..|+.|+.+++++..+|+.|+.+.++.++. ++.+.+.++.++.-||- .|+....+++.|+-...++.|+. |..
T Consensus 308 lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka-hP~ 386 (461)
T KOG4199|consen 308 LSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA-HPV 386 (461)
T ss_pred HHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh-CcH
Confidence 9999999999999999999999999999874 34467778899999986 66888889999999999999998 556
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 441 SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 441 ~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
...++.+|++++.|+..++...+..+.. .+++.|+.......+.....|...|+-|--
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 7889999999999999988878887775 558888888888888888888889987753
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.3e-13 Score=134.41 Aligned_cols=268 Identities=18% Similarity=0.228 Sum_probs=222.8
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV--SRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVP 307 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~ 307 (537)
.+.+.....+++..|..++...++ +..+.+...++++|. .++.++....+..+..-+. ++-||..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 567788888899999999876554 455677888898885 4567787777777775554 889999999999999
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHHcccCcchh----------hHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcC
Q 009320 308 LLIDVLK-SGSEESQEHAAGALFSLALEDENK----------MAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLI 375 (537)
Q Consensus 308 ~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k----------~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 375 (537)
.+...|. .+...+...++++++.|..+++.| ..|...|++..|++.+.-+ +|.....+..+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9987665 455567777889999998877643 5566778899999999887 778888999999999999
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCCc------hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSGE------STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~~------~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
++.+..+++.|++..|++++.+.+ ....++..|..|+..++.+..|++.|+.+.++.++.. |.+++.+.+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~-h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR-HSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH-cCCChHHHHHHH
Confidence 999999999999999999998633 2344899999999999999999999999999998877 678999999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHHHHHHHHhhcCCCC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERG--SQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A~~lL~~L~~~~~e 503 (537)
.++.-||-..+.....+.+.|+-...++-++.. ...+|++|+++++++.....+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999998888888888999888777765543 356899999999999977544
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=2.2e-14 Score=159.73 Aligned_cols=296 Identities=20% Similarity=0.230 Sum_probs=234.4
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHH----------HccC-------CHHHH-H
Q 009320 223 EEELSKKLR---SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNL----------VVSR-------YSIVQ-T 281 (537)
Q Consensus 223 ~~~Lv~~L~---s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l----------L~s~-------~~~v~-~ 281 (537)
++.|++.|. .++.+.+..|-..|+|+-+..++.+..=.+..++.+|-.+ +... ..+=+ .
T Consensus 237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lc 316 (2195)
T KOG2122|consen 237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLC 316 (2195)
T ss_pred hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhH
Confidence 567888883 3456778889999999998887766555555555555422 2211 11223 3
Q ss_pred HHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc-----C-------CHHHHHHHHHHHHHcccCcc-hhhHHh-hcCch
Q 009320 282 NAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS-----G-------SEESQEHAAGALFSLALEDE-NKMAIG-VLGAL 347 (537)
Q Consensus 282 ~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~-----~-------~~e~~~~Aa~~L~~Ls~~~~-~k~~I~-~~g~l 347 (537)
.|+.+|..++.+++.+..|.+.|++++|-.+|.- + ...+|.+|.-+|.||++.+. ||..+. ..|.+
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 6778899999999999999999999999887742 1 24589999999999998874 888888 57999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCh-hhHHHH-HhcCcHHHHHHHh-cC--CchHHHHHHHHHHHhc-ChhhHHHH
Q 009320 348 QPLMHALRAESERTRHDSALALYHLTLIQ-SNRVKL-VKLNAVATLLTMV-KS--GESTSRVLLILCNLAA-SNEGRSAI 421 (537)
Q Consensus 348 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~i-v~~g~v~~Lv~lL-~~--~~~~~~al~~L~nLa~-~~~~r~~i 421 (537)
+.||..|.+..+++...-+.+|+||++.. .|-.++ -+.|-|..|+... .. .......|.+|+||+. +.+|+..|
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99999999988899999999999999854 444444 4689999999865 32 2345558999999987 55899999
Q ss_pred Hh-CCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhc---CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 422 LD-ANGVSILVGMLRES-GSDSEATRENCVAALFALGH---GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 422 ~~-~g~I~~Lv~lL~~~-~~~~~~~~e~A~~~L~~L~~---~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.. .|++..||.+|.=. .+..-.+.|.|-++|.|++. ..+.+++++.+.+++..|+..+++.+-.+..+++..||+
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN 556 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN 556 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence 86 67799999999751 12456788999999999887 356799999999999999999999999999999999999
Q ss_pred hhcCCCCCcchhhhhhhhcCCccccc
Q 009320 497 LKGREDDDEDVDWEGVLDSGGLTRSR 522 (537)
Q Consensus 497 L~~~~~e~~~~d~~~v~~~g~~~~~~ 522 (537)
|....++ |.+.+|+.|.|+..|
T Consensus 557 LSAR~p~----DQq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 557 LSARSPE----DQQMLWDDGAVPMLR 578 (2195)
T ss_pred hhcCCHH----HHHHHHhcccHHHHH
Confidence 9998776 677888999887653
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=2.4e-12 Score=126.14 Aligned_cols=192 Identities=20% Similarity=0.250 Sum_probs=166.6
Q ss_pred hcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh
Q 009320 260 CTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK 338 (537)
Q Consensus 260 ~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k 338 (537)
.+.+-++.|+.+|. +.++.+++.++.++.|.+.++.++..+.+.|+++.+..+|..+++.+++.|..+|.+++.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 45566888999997 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC
Q 009320 339 MAIGVLGALQPLMHALRAE--SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS 414 (537)
Q Consensus 339 ~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~ 414 (537)
..|-. .++.+++.+.+. +...+..++.+|.||+...+.+..+.. .++.++.+|..++ .+..++.+|.||+..
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88753 577777765554 668889999999999988877776644 7999999998665 566799999999999
Q ss_pred hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 415 NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 415 ~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
++....+..+++...++.++.. ..+.+....++.++.+|..
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~--~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNS--SESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccchhHHHHHHcc--CCccHHHHHHHHHHHHHHH
Confidence 9998888888999999999987 2467788889999999965
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.47 E-value=1.2e-11 Score=121.32 Aligned_cols=188 Identities=22% Similarity=0.238 Sum_probs=163.7
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
..+.|+..|+ +.++..++.|+..+.+.+. .+.++..+.+.|+++.+..+|..+++.++..|+.+|.|++.+.+|+..|
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 3578999996 6789999999999999874 6799999999999999999999999999999999999999999998877
Q ss_pred HhcCCHHHHHHHHccC--CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh
Q 009320 301 VRSGFVPLLIDVLKSG--SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 378 (537)
-. .++.+++.+.+. +.+++..+.++|.+|+..+++...+.. .++.++.+|..|+..++..++++|.||+.++.+
T Consensus 92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 54 577777755443 578999999999999999888777754 699999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcC
Q 009320 379 RVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAAS 414 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~ 414 (537)
...++.++++..++.++.... ....++.+..|+..+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999997543 455678888887553
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.46 E-value=5.7e-12 Score=135.87 Aligned_cols=278 Identities=22% Similarity=0.180 Sum_probs=203.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChH--HHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEE--LRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
.+++.||.+|.+.+.++|..|+.+|+||...+.. ++..|.+.++|+.++++|.. .|.++++....+|.||+.+|..|
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 3578999999999999999999999999988766 99999999999999999975 78999999999999999998888
Q ss_pred HHHHhcCCHHHHHHHHc---c----C-------CHHHHHHHHHHHHHccc-CcchhhHHhh-cCchHHHHHHhc------
Q 009320 298 VLIVRSGFVPLLIDVLK---S----G-------SEESQEHAAGALFSLAL-EDENKMAIGV-LGALQPLMHALR------ 355 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~---~----~-------~~e~~~~Aa~~L~~Ls~-~~~~k~~I~~-~g~l~~Lv~lL~------ 355 (537)
..|+.. .+..|..-.- + + ..++-.+++++|.|++. .++.+..+.+ .|.|..|+..++
T Consensus 355 ~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 877753 2333332110 0 0 12233344445554443 2333333333 234444433333
Q ss_pred --------------------------------------------------------------------------------
Q 009320 356 -------------------------------------------------------------------------------- 355 (537)
Q Consensus 356 -------------------------------------------------------------------------------- 355 (537)
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence
Q ss_pred ---------------c-CCHHHHHHHHHHHHHhhcC-----hhhHHHH-HhcCcHHHHHHHhcCC--chHHHHHHHHHHH
Q 009320 356 ---------------A-ESERTRHDSALALYHLTLI-----QSNRVKL-VKLNAVATLLTMVKSG--ESTSRVLLILCNL 411 (537)
Q Consensus 356 ---------------~-~~~~~~~~A~~aL~nLs~~-----~~n~~~i-v~~g~v~~Lv~lL~~~--~~~~~al~~L~nL 411 (537)
. .++.+.++++.||-||+.. ..-+..+ ..+.+.++|+++|..+ .+...++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 1 1334555666677776632 2233444 4577889999999743 4667789999999
Q ss_pred hcChhhHHHHHhCCcHHHHHHHHhccCC---CCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH-hCCHHHH
Q 009320 412 AASNEGRSAILDANGVSILVGMLRESGS---DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE-RGSQRAK 487 (537)
Q Consensus 412 a~~~~~r~~i~~~g~I~~Lv~lL~~~~~---~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k 487 (537)
+.+..++..|. ..+++.|++.|..... .++++...++.+|+++...+.....-+.+.++++.|+.+.. ..+++.-
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999999998 7889999999987322 25888999999999999888777777788999999999955 4567899
Q ss_pred HHHHHHHHHhhcC
Q 009320 488 EKAKRILEMLKGR 500 (537)
Q Consensus 488 ~~A~~lL~~L~~~ 500 (537)
+.|..+|..|..+
T Consensus 673 kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 673 KAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777655
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2e-11 Score=124.02 Aligned_cols=275 Identities=16% Similarity=0.218 Sum_probs=210.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+..||+.|..++.+........|..|+- -.+++..+.+.|.|..|++++...+++++...+..|.||+.+..++..|+.
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~ 384 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN 384 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh
Confidence 4567888877888888888899999984 457888899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.|.+|.|+.+|.+.. -..-|..+|+.++.+++.|..+.....++.+++.+-++ +.++-........|||.+..|.+.
T Consensus 385 ~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQl 462 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQL 462 (791)
T ss_pred ccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceE
Confidence 999999999997654 23457889999999999999998888999999887766 344444445555678877777766
Q ss_pred HHhcCcHHHHHHH------------hc-----CC-----------------------chHHHHHHHHHHHhcCh------
Q 009320 382 LVKLNAVATLLTM------------VK-----SG-----------------------ESTSRVLLILCNLAASN------ 415 (537)
Q Consensus 382 iv~~g~v~~Lv~l------------L~-----~~-----------------------~~~~~al~~L~nLa~~~------ 415 (537)
+++..++..|++. +. ++ ...-.|+++|.||...+
T Consensus 463 vceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i 542 (791)
T KOG1222|consen 463 VCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI 542 (791)
T ss_pred EecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH
Confidence 6665566665541 10 11 01122666777765311
Q ss_pred --------------------------------------hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 416 --------------------------------------EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 416 --------------------------------------~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+....+..++.|+.|+++|... ..+++..-..+.++..+..
T Consensus 543 lq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~-QeDDEfV~QiiyVF~Q~l~ 621 (791)
T KOG1222|consen 543 LQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQAC-QEDDEFVVQIIYVFLQFLK 621 (791)
T ss_pred HhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhh-cccchHHHHHHHHHHHHHH
Confidence 1112233467899999999873 3566777778888888888
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
+....+-++++...-.-|+.++++.+..+++.+-.+|-.++.+.
T Consensus 622 He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 622 HELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 86555556666666778999999999999999999998888763
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.37 E-value=3.6e-10 Score=122.48 Aligned_cols=273 Identities=17% Similarity=0.141 Sum_probs=214.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
+.|...|.+.++.++..+++.|.++.+++......+.+.++++.++..+.+++..+...|+.+|.+++.++.....+...
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 56777788999999999999999999888777788889999999999999999999999999999999988777788888
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
+.+..|..++...+..+|..+..++.+++... +....+...|.++.++..|++.|.-++.+++..|..|+..+.+...+
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHH
Confidence 88999999998878888999999999998654 45555557899999999999988889999999999999999999999
Q ss_pred HhcCcHHHHHHHhcCCc--h------HHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 383 VKLNAVATLLTMVKSGE--S------TSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~------~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
.+.|+++.|+.++.+.. . .--.+....+++.. +...-. .-...+..|.+++.+ .+...+..|+.+|.
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s---~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLES---QDPTIREVAFDTLG 315 (503)
T ss_pred HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCC---CChhHHHHHHHHHH
Confidence 99999999999996322 1 11134555666653 211110 012234455555555 78899999999999
Q ss_pred HhhcCChHHHHH-HHHCCcHHHHHH----HHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGL-AKEARAAEVLRE----VEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~-i~~~g~i~~L~~----ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.++...+....+ ....+.+...+. ...++..++|-.+...|..+-..
T Consensus 316 ~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 316 QIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 999877655545 333344444443 45567788999999999888544
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.36 E-value=3.7e-13 Score=93.85 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=31.0
Q ss_pred cccccccccCCeecCCCccccHHHHHHHHHcCC---CCCCCC
Q 009320 31 CPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGF---LPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~---~~cp~~ 69 (537)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999987643 368876
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.26 E-value=2.4e-09 Score=116.10 Aligned_cols=271 Identities=17% Similarity=0.110 Sum_probs=212.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH-HHhc
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL-IVRS 303 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~-i~~~ 303 (537)
.++..|...+.+....++..|..+.....- .. ...+..+.|...|.++++.++..++..|.++..+.+.... +.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~-~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSP-DS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCH-HH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 377888877888888888888888753321 11 1456789999999999999999999999999887665444 4468
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~i 382 (537)
+.++.++..|.+++.++...|+.+|..|+.....-..+...+.+..|..++...++.++.....++.+++. +++....+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999988777777788889999999998788888899999999986 45666666
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCH---H-HHHHHHHHHHHhh
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSE---A-TRENCVAALFALG 456 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~---~-~~e~A~~~L~~L~ 456 (537)
...|+++.++..|.+.+ .+..++.+|..|+..+.|...+.+.|+++.|+.++.... .++ . ..-..+....+++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~-~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE-EDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc-cCCcccchhhhhHHHHHHHHH
Confidence 77999999999998877 455699999999999999999999999999999998732 222 1 1122234455555
Q ss_pred cC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 457 HG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 457 ~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.. +..+... -...+..|..+..+.++..+..|..+|-.+....
T Consensus 278 ~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 278 RVSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV 321 (503)
T ss_pred hcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH
Confidence 53 2222211 1345556667778889999999999999888654
No 25
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.23 E-value=6.2e-12 Score=115.47 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc---------------CCCCCCCCCCCCCCCCCcccHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL---------------GFLPDLENGFKPDFSTVIPNLA 83 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~---------------~~~~cp~~~~~~~~~~l~pn~~ 83 (537)
..++..++|.||||++.++|||+++|||.||+.||.+|+.. +...||+|+..+....++|.+.
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 45677889999999999999999999999999999999852 1236999999999989999863
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=2e-11 Score=125.40 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=63.6
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCD 93 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 93 (537)
..+...|.||||+++|.+||+++|||+||..||..|+... ..||.|+..+....+.+|+.|.++|+.|..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999764 479999999988889999999999999964
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.6e-10 Score=115.12 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc
Q 009320 277 SIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 277 ~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~ 356 (537)
+.+...|+-.|.||+.+-..-..|...+.|.-||+.|...+.++.......|..|+...+||..+.+.|+++.|++++..
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 34556677788999988777788888999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhc
Q 009320 357 ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 357 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
..+..+...+..|+||+....++.+|+..|.+|.|+.+|.+.....-|+.+|..++..++.+..+....+|+.+.+.+-.
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877777999999999999999999999999999996554
Q ss_pred cCCCCHHHHHHHHHHHHHhhc
Q 009320 437 SGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~ 457 (537)
. ...++--..++.-.|||.
T Consensus 437 ~--~~~~vdl~lia~ciNl~l 455 (791)
T KOG1222|consen 437 G--TGSEVDLALIALCINLCL 455 (791)
T ss_pred c--CCceecHHHHHHHHHHHh
Confidence 1 233333333444456665
No 28
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.2e-11 Score=114.27 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=74.1
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEH 99 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~ 99 (537)
+.++|+.++|.|+.+||+|||+.|+|.||+|+.|.++++.-+...|+|+.++....++||++|+..|..|...|+|..
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 689999999999999999999999999999999999998877789999999999999999999999999999999853
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=8.3e-10 Score=95.28 Aligned_cols=116 Identities=32% Similarity=0.330 Sum_probs=105.5
Q ss_pred hhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-
Q 009320 259 ICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE- 336 (537)
Q Consensus 259 i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~- 336 (537)
+.+.|+++.|+.++.+.+..++..++.+|.+++.+ ++....+.+.|+++.|+.+|.+++++++..++++|.+|+....
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 55789999999999999999999999999999996 7888888999999999999999999999999999999998875
Q ss_pred hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 337 NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 337 ~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
.+..+.+.|+++.|+++|...+..+++.++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45555678999999999999999999999999999863
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.11 E-value=2.4e-09 Score=92.41 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=105.0
Q ss_pred HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 381 KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
.+++.|+++.|+++|.+++ ....++.+|.+++.. ++.+..+.+.++++.++++|.+ .++.++..|+++|++|+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHcc
Confidence 4678999999999998764 566699999999997 7889999999999999999998 789999999999999999
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
..+.....+.+.|+++.|++++.+.+.++++.|..+|.+|..
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 887777888889999999999999999999999999998863
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.09 E-value=7.4e-09 Score=104.57 Aligned_cols=298 Identities=17% Similarity=0.105 Sum_probs=222.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc----C---CHHHHHHHHHHHHHhcC-CC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS----R---YSIVQTNAVASLVNLSL-EK 294 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s----~---~~~v~~~a~~~L~nLs~-~~ 294 (537)
++.|.+...|.+.++-++..++|.|++.++.++|..+.+.|+-..++++|.. + +.+...-+...|.|-.. ++
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 4566666678888999999999999999999999999999997777777752 2 23566777788988887 45
Q ss_pred ccHHHHHhcCCHHHHHHHHccC----------------------------------------------CHHHHHHHHHHH
Q 009320 295 KNKVLIVRSGFVPLLIDVLKSG----------------------------------------------SEESQEHAAGAL 328 (537)
Q Consensus 295 ~~k~~i~~~g~v~~Lv~lL~~~----------------------------------------------~~e~~~~Aa~~L 328 (537)
+.+.++++.|+++.|...+--+ .++.++....+|
T Consensus 169 ~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feil 248 (604)
T KOG4500|consen 169 ELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEIL 248 (604)
T ss_pred HHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHH
Confidence 7788999999998777665211 122344445566
Q ss_pred HHcccCcchhhHHhhcCchHHHHHHhccC-CH-------HHHHHHHHHHHHhhcChhhHHHHHhcC-cHHHHHHHhcCCc
Q 009320 329 FSLALEDENKMAIGVLGALQPLMHALRAE-SE-------RTRHDSALALYHLTLIQSNRVKLVKLN-AVATLLTMVKSGE 399 (537)
Q Consensus 329 ~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~-------~~~~~A~~aL~nLs~~~~n~~~iv~~g-~v~~Lv~lL~~~~ 399 (537)
...+.++..|..+++.|.++.++++++.- +. ...+.++....-|...++.-.++...+ +++.++.-+.+.+
T Consensus 249 a~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d 328 (604)
T KOG4500|consen 249 AKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDD 328 (604)
T ss_pred HHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCc
Confidence 66677777888888889999999998873 11 123344444444555666666677666 8888888887655
Q ss_pred --hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHH
Q 009320 400 --STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE--SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVL 475 (537)
Q Consensus 400 --~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~--~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L 475 (537)
....+.-+|.|+++.++....+++.+.+..|+.+|.. ...++-+.+..++++|.+|.---. .+..+..+|+.+.+
T Consensus 329 ~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvteaI 407 (604)
T KOG4500|consen 329 SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVTEAI 407 (604)
T ss_pred hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccchHHHH
Confidence 4555778889999999999999999999999997764 233567788899999999987432 45666789999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhhcCCCCC------------cchhhhhhhhcCCcccc
Q 009320 476 REVEERGSQRAKEKAKRILEMLKGREDDD------------EDVDWEGVLDSGGLTRS 521 (537)
Q Consensus 476 ~~ll~~~s~~~k~~A~~lL~~L~~~~~e~------------~~~d~~~v~~~g~~~~~ 521 (537)
+.+++..+|++.-+-...|++++..-+.. .=.+|..=-|+.|+--+
T Consensus 408 L~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gE 465 (604)
T KOG4500|consen 408 LLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGE 465 (604)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhh
Confidence 99999999999999999999999875411 22367666666655443
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.08 E-value=2.6e-08 Score=104.10 Aligned_cols=273 Identities=14% Similarity=0.089 Sum_probs=199.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+..++..|..++...+..|...|..+...+..........-.+..|...|.+. +...+..++.+|..|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 35677788888899999999999988743322111000011233455555543 46778888899999999999999999
Q ss_pred hcCCHHHHHHHHccC--CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcCh--
Q 009320 302 RSGFVPLLIDVLKSG--SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQ-- 376 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-- 376 (537)
+.++++.|+.+|+.. +.+++-+++-+++-||+.++........+.++.|+++++.. .+.+.+-++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999763 46888899999999999988666666789999999999876 5678999999999988732
Q ss_pred -----hhHHHHHhcCcHHHHHHHhc----CCchHH-------HHHHHHHHHhcChhhH----------------------
Q 009320 377 -----SNRVKLVKLNAVATLLTMVK----SGESTS-------RVLLILCNLAASNEGR---------------------- 418 (537)
Q Consensus 377 -----~n~~~iv~~g~v~~Lv~lL~----~~~~~~-------~al~~L~nLa~~~~~r---------------------- 418 (537)
.....|+..|+.+.+-.+.. |++..+ ..-..+..+++.++.+
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 34567788887665544432 222211 1223333444333322
Q ss_pred --HHHHhCCc--HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHH
Q 009320 419 --SAILDANG--VSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494 (537)
Q Consensus 419 --~~i~~~g~--I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL 494 (537)
..+.+.+. +..|+++|.. +.++.+..-|+.=+..++++.+.-+.++.+.|+=..+++++.+.++++|.+|..++
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~--s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLET--SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhc--CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 23333433 7899999965 36778888888999999997667788888999999999999999999999999999
Q ss_pred HHh
Q 009320 495 EML 497 (537)
Q Consensus 495 ~~L 497 (537)
+.|
T Consensus 421 Qkl 423 (429)
T cd00256 421 QKL 423 (429)
T ss_pred HHH
Confidence 655
No 33
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.4e-08 Score=95.46 Aligned_cols=278 Identities=19% Similarity=0.204 Sum_probs=196.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHh-hcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+....++.+|.+.++.++..|+..+..++.. ..+... .....++.|.+++....+ .+.|+.+|.|++.++..++.
T Consensus 3 s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 3 SELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHH
Confidence 3456799999999999999999999999865 222222 235568888898876655 67789999999998888888
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh---h----cCchHHHHHHhccC-CHHH-HHHHHHHHH
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG---V----LGALQPLMHALRAE-SERT-RHDSALALY 370 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~---~----~g~l~~Lv~lL~~~-~~~~-~~~A~~aL~ 370 (537)
++.. .+..++.++.......-..++.+|.||+..++....+. . .|.+.........+ +..+ ....+-.+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8876 88888888887766666778899999999887554443 1 23333333334333 2222 345566788
Q ss_pred HhhcChhhHHHHHhcC--cHHHHHHHhcCCchH--HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHH------------
Q 009320 371 HLTLIQSNRVKLVKLN--AVATLLTMVKSGEST--SRVLLILCNLAASNEGRSAILDANGVSILVGML------------ 434 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g--~v~~Lv~lL~~~~~~--~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL------------ 434 (537)
||+.....|..+.... .++.|+.+-..++.. .-.+++|.|.|-.......+.+ ..+..|..+|
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccccCHH
Confidence 8999988888887755 222233222322222 2279999999998888777776 3344444333
Q ss_pred ------------h--ccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHH-HHhCCHHHHHHHHHHHHHhhc
Q 009320 435 ------------R--ESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV-EERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 435 ------------~--~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l-l~~~s~~~k~~A~~lL~~L~~ 499 (537)
- .....++.++..-+.+|..||.... -++.++..|+.+.|.++ ....++.+++.+..+.++|..
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 1 0011367889999999999998664 46788889999999988 556789999999999999998
Q ss_pred CCCCCc
Q 009320 500 REDDDE 505 (537)
Q Consensus 500 ~~~e~~ 505 (537)
.+++-+
T Consensus 316 ~e~~~G 321 (353)
T KOG2973|consen 316 LEPEIG 321 (353)
T ss_pred cccccc
Confidence 665543
No 34
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.99 E-value=2.9e-10 Score=78.24 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=33.3
Q ss_pred cccccccccCC-eecCCCccccHHHHHHHHHcCCCCCCCC
Q 009320 31 CPVSGSLMFDP-VVVSTGQTFDRVSVQVCRELGFLPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~ 69 (537)
||||.+.++|| |+++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999999999999999 5689876
No 35
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.94 E-value=1.4e-07 Score=95.53 Aligned_cols=276 Identities=15% Similarity=0.075 Sum_probs=205.2
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CC-------HHHHHHHHHHHHHhcCC
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RY-------SIVQTNAVASLVNLSLE 293 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~-------~~v~~~a~~~L~nLs~~ 293 (537)
+..+++.|. +-+++..+.....|...+ +++..+..+.+.|.+..++.++.. ++ -..-..++....-|...
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence 456666663 445555565666666666 567788888999999999998854 21 12334455555555555
Q ss_pred CccHHHHHhcC-CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-----CCHHHHHHHHH
Q 009320 294 KKNKVLIVRSG-FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-----ESERTRHDSAL 367 (537)
Q Consensus 294 ~~~k~~i~~~g-~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-----~~~~~~~~A~~ 367 (537)
++.-.++.+.+ +++.++..+.+.+......++-+|.|++..+++...+.+.+.+..|+++|.. ++.+.+.+++.
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 55555555544 8899999999999999999999999999999999999999999999999865 35678889999
Q ss_pred HHHHhhcChhhHHHHHhcCcHHHHHHHhc--CCchHHHHHHHHHHHhcChh-hHHHHHh-CCcHHHHHHHHhccCCCCHH
Q 009320 368 ALYHLTLIQSNRVKLVKLNAVATLLTMVK--SGESTSRVLLILCNLAASNE-GRSAILD-ANGVSILVGMLRESGSDSEA 443 (537)
Q Consensus 368 aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~--~~~~~~~al~~L~nLa~~~~-~r~~i~~-~g~I~~Lv~lL~~~~~~~~~ 443 (537)
||+||...-.|+..+..+|++...+..+. .+.++.+-++.|.-+-..-+ ..-.+.+ ..-+..|++.-++ .+...
T Consensus 384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks--~D~aG 461 (604)
T KOG4500|consen 384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKS--PDFAG 461 (604)
T ss_pred HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhC--Cccch
Confidence 99999999999999999999999999886 45577888888776654333 2222332 2336777777766 23445
Q ss_pred HHHHHHHHHHHhhcCC--hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 444 TRENCVAALFALGHGN--LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 444 ~~e~A~~~L~~L~~~~--~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
+.-...+.|..|.+++ ..+...+-+.|++..++.+.-...-..+..|.-.|..+..-.
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 6777788888888874 334445557899999999988888888888888887776543
No 36
>PRK09687 putative lyase; Provisional
Probab=98.92 E-value=2.2e-07 Score=93.10 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=124.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.|+..|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..++.+|..|...+.. .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4678999999999999999999887752 34577888888889999999999999998653322 1
Q ss_pred cCCHHHHHHH-HccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLIDV-LKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
...++.|..+ +.+.++.+|..|+.+|.++....... ...+++.|...+.+.+..++..++.+|..+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------
Confidence 2345667666 56778889999999998875332111 1124455666666667777777777775442
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
...+++.|+.+|.+.+ ++..|+..|..+... ...+++.|+.+|.+ .+..++..|+..|..
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQD---KNEEIRIEAIIGLAL 218 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcC---CChHHHHHHHHHHHc
Confidence 2236777777776544 344456665554211 11334555555554 455666666655553
No 37
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.91 E-value=1.2e-07 Score=96.84 Aligned_cols=226 Identities=19% Similarity=0.129 Sum_probs=157.9
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHHHHhcCCC-ccHHHHHh------cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 265 LSALRNLVV--SRYSIVQTNAVASLVNLSLEK-KNKVLIVR------SGFVPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 265 i~~Lv~lL~--s~~~~v~~~a~~~L~nLs~~~-~~k~~i~~------~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
...++.+|. +.+.++....+..+..+..++ .....+.. .....++++++..++.-++..|+.+|..|....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 555566664 367889999999999877654 44444443 125789999999999999999999999988766
Q ss_pred chhhHHhhcCchHHHHHHhccC----CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHh-----cCCc----hHH
Q 009320 336 ENKMAIGVLGALQPLMHALRAE----SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMV-----KSGE----STS 402 (537)
Q Consensus 336 ~~k~~I~~~g~l~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL-----~~~~----~~~ 402 (537)
..+..-...+.++.++..|.+. +......|+.+|.+|...++.|..+++.|+++.|+.+| .... ..-
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 5544443356778888888763 33466889999999999999999999999999999999 2222 345
Q ss_pred HHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHCCcHHHHHHHHHh
Q 009320 403 RVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR-FKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 403 ~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~i~~L~~ll~~ 481 (537)
.++-+++.|+-.++....+.+.+.|+.|+++++. ..-+.+...++++|.||+..... ....+...|+.+.|-.|...
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 5999999999999999999999999999999998 35789999999999999986542 56666666766666555432
Q ss_pred --CCHHHHHHHHH
Q 009320 482 --GSQRAKEKAKR 492 (537)
Q Consensus 482 --~s~~~k~~A~~ 492 (537)
+|+++.+--..
T Consensus 295 k~~Dedl~edl~~ 307 (312)
T PF03224_consen 295 KWSDEDLTEDLEF 307 (312)
T ss_dssp --SSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 34555444333
No 38
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.89 E-value=5.5e-10 Score=83.07 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.2
Q ss_pred CccccccccccccCCeec-CCCccccHHHHHHHHHcC-CCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELG-FLPDLENG 70 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~ 70 (537)
..|.||||+..|+|||+. .|||+|||.+|.+|++.+ ...||+.+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 368999999999999985 999999999999999543 34699854
No 39
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.87 E-value=9.3e-10 Score=76.69 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=22.1
Q ss_pred cccccccccC----CeecCCCccccHHHHHHHHHcC
Q 009320 31 CPVSGSLMFD----PVVVSTGQTFDRVSVQVCRELG 62 (537)
Q Consensus 31 CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~ 62 (537)
||||++ |.+ |++++|||+||+.||+++++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 999999 999 9999999999999999998864
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.4e-07 Score=99.30 Aligned_cols=257 Identities=16% Similarity=0.145 Sum_probs=193.3
Q ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcC-CCcc
Q 009320 221 PEEEELSKKLRSA-DIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSL-EKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~-~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~-~~~~ 296 (537)
.++..|++-|... ++..|.+|+..|+.+ ...+++.-..+--.-++|.|+.+|+. .+.++...|+++|.+|.. .+..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4678888888654 888899998888754 45555555555567789999999986 478999999999999987 6778
Q ss_pred HHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...+++.++||.|+.-| .-.-.++-+++..+|..++.... ..|.+.|++...+..|.=-+..+++.|+.+..|+|..
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88889999999999755 44568899999999999987654 3577889999988888777788999999999999863
Q ss_pred --hhhHHHHHhcCcHHHHHHHhcC--CchHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCC-CCHHHHH
Q 009320 376 --QSNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGS-DSEATRE 446 (537)
Q Consensus 376 --~~n~~~iv~~g~v~~Lv~lL~~--~~~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~-~~~~~~e 446 (537)
++.=..+ ..++|.|..+|+. ....+.++-+++.++. .++--+.+...+.|....++|....+ -+..+..
T Consensus 325 i~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 325 IRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 2222222 3479999999974 3455665555555543 44555667788999999998876211 1344566
Q ss_pred HHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh
Q 009320 447 NCVAALFALGHGNLRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 447 ~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
..+.+|..+|.+.+-....+...++...|..++.+
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 77888888888866666666677888888887654
No 41
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.82 E-value=3e-09 Score=74.07 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=35.7
Q ss_pred cccccccccCCe-ecCCCccccHHHHHHHHH-cCCCCCCCC
Q 009320 31 CPVSGSLMFDPV-VVSTGQTFDRVSVQVCRE-LGFLPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~-~~~~~cp~~ 69 (537)
||||.+.+.+|+ +++|||+||+.||.+|++ .+..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 999999999999999998 555679976
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.72 E-value=5.9e-07 Score=91.73 Aligned_cols=220 Identities=18% Similarity=0.140 Sum_probs=155.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhc------CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT------PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~------~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+++.+ +.+.+.....+..+..+..+++.....+.. ......+++++..++.-++..|+.+|..|.........
T Consensus 63 lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~ 141 (312)
T PF03224_consen 63 LLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE 141 (312)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H
T ss_pred HHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 33333 468888888888999888777655444432 22577888888889999999999999998875433333
Q ss_pred HHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh-----ccC--CHHHHHHHHHH
Q 009320 300 IVRSGFVPLLIDVLKS----GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL-----RAE--SERTRHDSALA 368 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL-----~~~--~~~~~~~A~~a 368 (537)
-...+.++.++..|.+ .+.+.+..++.+|.+|...+.+|..+.+.++++.|+.+| .++ +.+..-.++.+
T Consensus 142 ~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~ 221 (312)
T PF03224_consen 142 KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLC 221 (312)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHH
Confidence 3224566788887765 345677899999999999999999999999999999999 222 45678899999
Q ss_pred HHHhhcChhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChh--hHHHHHhCCcHHHHHHHHhccCCCCHH
Q 009320 369 LYHLTLIQSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNE--GRSAILDANGVSILVGMLRESGSDSEA 443 (537)
Q Consensus 369 L~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~--~r~~i~~~g~I~~Lv~lL~~~~~~~~~ 443 (537)
++.|+.+++....+...+.|+.|+++++... +..-++.+|.||...+. ....|+..++++.+-.+... .-.+++
T Consensus 222 lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r-k~~Ded 300 (312)
T PF03224_consen 222 LWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER-KWSDED 300 (312)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS---SSHH
T ss_pred HHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC-CCCCHH
Confidence 9999999999999999999999999997532 44448999999998775 78888877765555444444 345666
Q ss_pred HHHH
Q 009320 444 TREN 447 (537)
Q Consensus 444 ~~e~ 447 (537)
..+.
T Consensus 301 l~ed 304 (312)
T PF03224_consen 301 LTED 304 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 43
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.68 E-value=9.2e-09 Score=100.25 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=61.1
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWC 92 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~ 92 (537)
.+-.-+.|-||.+.|+-||++|||||||--||..++... ..||.|..++....|+-|..|-.+|+.+-
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 445568999999999999999999999999999998773 46999999999999999999999999873
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.67 E-value=4.8e-09 Score=78.07 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=33.3
Q ss_pred ccccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 009320 28 EFLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTI 88 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i 88 (537)
-+.|++|.++|++||. -.|.|+||+.||.+.+.. -||+|..|-...++.-|..|-++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 4789999999999996 699999999999776544 399999999889999999998876
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=9.2e-06 Score=87.98 Aligned_cols=273 Identities=18% Similarity=0.175 Sum_probs=202.2
Q ss_pred hhHHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCc--
Q 009320 221 PEEEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKK-- 295 (537)
Q Consensus 221 ~~~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~-- 295 (537)
+.++.|+.++ .+.-.+.++.|++.|+.+++ ..|..+...| ++.|+..|+. .++++...++.+++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4568888888 56677889999999999996 5666666555 7777887764 488999999999999987552
Q ss_pred ----c-H----------HHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc--chhhHHh-hcCchHHHHHHhcc
Q 009320 296 ----N-K----------VLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLALED--ENKMAIG-VLGALQPLMHALRA 356 (537)
Q Consensus 296 ----~-k----------~~i~-~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~I~-~~g~l~~Lv~lL~~ 356 (537)
+ + ..+. ..+.|..|+..+...+-.+|..++..|.+|-... +.+..+. -+-+|..|+.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 2 2 1222 3578999999999889999999999999986554 4555665 46799999999999
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHh-cCcHHHHHHHhcC-----Cc-hHHHHHHHHHHHhcCh-hhHHHHHhCCcHH
Q 009320 357 ESERTRHDSALALYHLTLIQSNRVKLVK-LNAVATLLTMVKS-----GE-STSRVLLILCNLAASN-EGRSAILDANGVS 428 (537)
Q Consensus 357 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~g~v~~Lv~lL~~-----~~-~~~~al~~L~nLa~~~-~~r~~i~~~g~I~ 428 (537)
..+.++..++..|..|+....+..++|. .++...|+.++.+ +. +.+.|+..|-||-... .+...+.+.+-|+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8888999999999999988777777776 8999999999963 22 6788999999998755 7888899999999
Q ss_pred HHHHHHhccCCCCH-------H---HHHHHHHHHHHhhc-CC-----hHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHH
Q 009320 429 ILVGMLRESGSDSE-------A---TRENCVAALFALGH-GN-----LRFKGLAKEARAAEVLREVEERG--SQRAKEKA 490 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~-------~---~~e~A~~~L~~L~~-~~-----~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A 490 (537)
.|.++|..-..++. . ....++.++..|.. ++ ..+++.+...+++..|..++-+. ..++...+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 99998865322332 1 12334445555554 22 23456777889999998875544 23555555
Q ss_pred HHHHHHh
Q 009320 491 KRILEML 497 (537)
Q Consensus 491 ~~lL~~L 497 (537)
.-++...
T Consensus 338 iitvAev 344 (970)
T KOG0946|consen 338 IITVAEV 344 (970)
T ss_pred HHHHHHH
Confidence 5444333
No 46
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.6e-08 Score=102.66 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVE 98 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 98 (537)
...+++.||||++.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+..+++.....+...
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence 3467899999999999999999999999999999888 5568999996 333 7889999999999887766543
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.65 E-value=5.1e-06 Score=96.55 Aligned_cols=222 Identities=20% Similarity=0.170 Sum_probs=126.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.|++.|.+.++.++..|+..|..+.. ..+++.|+..|.++++.++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-------
Confidence 45788999999999999999998887652 346889999999999999999999887774211
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC------
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI------ 375 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~------ 375 (537)
...+.|...|.+.++.+|..|+.+|..+.. +....|+..|.+.++.++..|+.+|..+-..
T Consensus 684 --~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~ 750 (897)
T PRK13800 684 --PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGA 750 (897)
T ss_pred --CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHH
Confidence 112355556666666666666666655421 1122334444444555555555444432100
Q ss_pred -----hhhHHHHH---------hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCC
Q 009320 376 -----QSNRVKLV---------KLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGS 439 (537)
Q Consensus 376 -----~~n~~~iv---------~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~ 439 (537)
.+.|...+ ....++.|+.++.+.+ ++..|+..|..+... ...+..++..|.+
T Consensus 751 l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d--- 818 (897)
T PRK13800 751 ATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRA--- 818 (897)
T ss_pred hcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcC---
Confidence 00000000 1112455555555444 233344444433111 1112345555555
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 440 DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 440 ~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
.+..++..|+.+|..+.. ...++.|+.++.+.+..+++.|...|..+
T Consensus 819 ~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 819 SAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 456666666666655421 12346677777777777777777777665
No 48
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.62 E-value=2.4e-08 Score=72.69 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=40.5
Q ss_pred CccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
+++.|+||++-+.|++++||||. ||..|+.+|++. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46899999999999999999999 999999999984 568999998764
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.60 E-value=5e-06 Score=84.61 Aligned_cols=270 Identities=15% Similarity=0.083 Sum_probs=198.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHH----HHHHHcc-CCHHHHHHHHHHHHHhcCCCccH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSA----LRNLVVS-RYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~----Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
....+..|..++.-.+..+.+.|..++.-... -.+.+.... |-..+.+ .+.+....++.+|-.+...++.+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~----~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC----KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR 191 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh
Confidence 35678888888888888788888877743311 111112222 3333333 56667778888999999999999
Q ss_pred HHHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhc
Q 009320 298 VLIVRSGFVPLLIDVLKS--GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTL 374 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~ 374 (537)
..++.++++..|+..|.+ .+..++-+.+-.++-|+.++.....+...+.++.|.+++++. .+.+.+-.+.+++|+..
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998843 457888899999999999999887776778999999999886 56788899999999887
Q ss_pred Ch-------hhHHHHHhcCcHHHHHHHhc----CCch-------HHHHHHHHHHHhcChhhHHH----------------
Q 009320 375 IQ-------SNRVKLVKLNAVATLLTMVK----SGES-------TSRVLLILCNLAASNEGRSA---------------- 420 (537)
Q Consensus 375 ~~-------~n~~~iv~~g~v~~Lv~lL~----~~~~-------~~~al~~L~nLa~~~~~r~~---------------- 420 (537)
.. +....|+..++.+.+=.+.. |.+. .+..-.....|++.++...+
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 54 45567777766665544332 2221 22233333444544333332
Q ss_pred --------HHhCC--cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHH
Q 009320 421 --------ILDAN--GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKA 490 (537)
Q Consensus 421 --------i~~~g--~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A 490 (537)
+-+.+ .+..|+++|.. +.++.....|+.-+....++.++-+.++.+-|+=+.+++++.+.++++|-+|
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~--s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLET--SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhc--CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence 22222 47899999988 3568888888999999999877888889999999999999999999999999
Q ss_pred HHHHHHhh
Q 009320 491 KRILEMLK 498 (537)
Q Consensus 491 ~~lL~~L~ 498 (537)
..+++.|-
T Consensus 430 LlavQ~lm 437 (442)
T KOG2759|consen 430 LLAVQKLM 437 (442)
T ss_pred HHHHHHHH
Confidence 99986553
No 50
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.57 E-value=4.6e-08 Score=94.12 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=42.2
Q ss_pred CCCCccccccccccccCC--------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFDP--------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dP--------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
+...+..||||++.+.+| |+.+|||+||+.||.+|.+. ..+||+||.++.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 445678999999988764 67799999999999999876 458999998775
No 51
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.3e-08 Score=92.60 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=50.7
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCCCCCCCCCCCcccH
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l~pn~ 82 (537)
..|-|-||++.=+|||++.|||=||=.||-+|++- +...||+|+..+..+.++|=+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 37999999999999999999999999999999975 344799999999999999965
No 52
>PRK09687 putative lyase; Provisional
Probab=98.52 E-value=4.5e-06 Score=83.69 Aligned_cols=195 Identities=15% Similarity=0.078 Sum_probs=143.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~ 343 (537)
-++.|..+|.+.+..++..++.+|..+.. ...++.+..++.+.++.+|..|+.+|..|-..... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 37889999999999999999999887752 34567778889999999999999999998543221 2
Q ss_pred cCchHHHHHH-hccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHH
Q 009320 344 LGALQPLMHA-LRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSA 420 (537)
Q Consensus 344 ~g~l~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~ 420 (537)
..+++.|..+ +++.++.++..|+.+|.+++....+. ...++..|...+.+.+ ++..++.+|..+
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~--------- 155 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVI--------- 155 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc---------
Confidence 2367778777 56678899999999999986433211 1224556666666554 444466666433
Q ss_pred HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 421 ILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 421 i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.+..+++.|+.+|.+ .+..++..|+.+|..+..+++ .+++.|+.++.+.+..++..|...|..+..
T Consensus 156 -~~~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 156 -NDEAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred -CCHHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 234578999999988 788999999999999844332 345668888888899999999888866443
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.50 E-value=1.2e-05 Score=93.61 Aligned_cols=225 Identities=19% Similarity=0.141 Sum_probs=146.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-------
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK------- 294 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~------- 294 (537)
.++.|++.|++.+..++..|+..|..+.... ...+.|...|.++++.++..++.+|..+...+
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~ 722 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAA 722 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 3588999999999999999999998774211 11345666666677777777776666543211
Q ss_pred ----cc--HHH----HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHH
Q 009320 295 ----KN--KVL----IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHD 364 (537)
Q Consensus 295 ----~~--k~~----i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~ 364 (537)
+. +.. +...+..+.|..+|.+.+.++|..++.+|..+... ....++.|..++.+.++.++..
T Consensus 723 L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 723 LGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred hcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHH
Confidence 00 000 00112234445555555566666666655544221 1123677888888888888888
Q ss_pred HHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCH
Q 009320 365 SALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSE 442 (537)
Q Consensus 365 A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~ 442 (537)
|+.+|.++... ..++..|+..|.+.+ ++..|+.+|..+. ....++.|+.+|.+ .+.
T Consensus 795 A~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D---~~~ 852 (897)
T PRK13800 795 ALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTD---PHL 852 (897)
T ss_pred HHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcC---CCH
Confidence 88888766332 113356777787765 4444777776542 34567999999988 789
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 443 ATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 443 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.++..|+.+|..+- .++ ...+.|...+.+.+..+++.|...|..
T Consensus 853 ~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 853 DVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999998862 222 134567788889999999999998863
No 54
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.50 E-value=1.2e-07 Score=66.74 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=38.7
Q ss_pred ccccccccccCCeecC-CCccccHHHHHHHHHcCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELGFLPDLENGFK 72 (537)
Q Consensus 30 ~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~ 72 (537)
.|+||.+.+.+|+.+. |||.|++.|+..|++.+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999887 999999999999998867789999865
No 55
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.3e-08 Score=86.79 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=44.4
Q ss_pred ccccccccccccC--CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 28 EFLCPVSGSLMFD--PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 28 ~~~CpI~~~~m~d--PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
-|.||||++-+.. ||.+.|||.||+.||+.-++.++ +||+|++.+..+++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence 4999999999876 56689999999999999988854 8999999888776654
No 56
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.47 E-value=8.3e-08 Score=91.78 Aligned_cols=69 Identities=10% Similarity=-0.011 Sum_probs=60.2
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCD 93 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 93 (537)
.+-.-+.|-||.+.++-|+.++||||||--||.+++..+ ..||+|+.++....+.-|..++..++.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 444568999999999999999999999999999999773 469999999999888889888888887743
No 57
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.45 E-value=8.6e-08 Score=67.78 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=34.4
Q ss_pred cccccccccc---CCeecCCCccccHHHHHHHHHcCCCCCCCCC
Q 009320 30 LCPVSGSLMF---DPVVVSTGQTFDRVSVQVCRELGFLPDLENG 70 (537)
Q Consensus 30 ~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 70 (537)
.||||++-|. .++.++|||.|++.||.+|++.. ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999994 67789999999999999999884 5899985
No 58
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4e-05 Score=77.04 Aligned_cols=181 Identities=19% Similarity=0.210 Sum_probs=145.8
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHH
Q 009320 274 SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMH 352 (537)
Q Consensus 274 s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~ 352 (537)
+.+.+-++.|+.-|..+..+-+|...+...|++.+|+..|.+++.++|+.|+++|...+.++ ..+..+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 45677788888888888888889999999999999999999999999999999999988765 57788889999999999
Q ss_pred HhccCC-HHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc----hHHHHHHHHHHHhcCh-hhHHHHHhCC
Q 009320 353 ALRAES-ERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE----STSRVLLILCNLAASN-EGRSAILDAN 425 (537)
Q Consensus 353 lL~~~~-~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~----~~~~al~~L~nLa~~~-~~r~~i~~~g 425 (537)
+|.+.+ ..++.+|+.|+.+|-.+ ..........++...|...|++.+ .+.+++..|..|.... ..+..+...+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 998764 46779999999998875 556677778889999999998743 4566888888887654 3344444455
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
....+..+... .+..+.++++.++..+..
T Consensus 254 f~~~~~~l~~~---l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 254 FQRVLENLISS---LDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHHHHHhhc---cchhhhHHHHHHHHHHHH
Confidence 55555556655 678889999988887765
No 59
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.42 E-value=2.3e-07 Score=63.05 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=35.7
Q ss_pred cccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCC
Q 009320 31 CPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~ 69 (537)
||||++..++|++++|||.|+..|+..|++.+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998656679876
No 60
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.9e-05 Score=78.04 Aligned_cols=179 Identities=21% Similarity=0.236 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHH
Q 009320 316 GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTM 394 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~l 394 (537)
.+.+-++.|..-|..+..+-+|...+...|++..|+..+++.+..++..|+++|...+. ++..+..+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999887 57788999999999999999
Q ss_pred hcCCc---hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC
Q 009320 395 VKSGE---STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEAR 470 (537)
Q Consensus 395 L~~~~---~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g 470 (537)
|...+ ...+|+.++..|-... .+...+...++...|.++|.. ...+...+..++..+..|.........++...+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 97432 4577999999998754 688889889999999999988 235788899999999999886555556777777
Q ss_pred cHHHHHHHHHhCCHHHHHHHHHHHH
Q 009320 471 AAEVLREVEERGSQRAKEKAKRILE 495 (537)
Q Consensus 471 ~i~~L~~ll~~~s~~~k~~A~~lL~ 495 (537)
....+..+....+..+++.|...+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l 278 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALL 278 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHH
Confidence 7777788888888888888876653
No 61
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.37 E-value=2.4e-05 Score=80.27 Aligned_cols=263 Identities=16% Similarity=0.151 Sum_probs=184.6
Q ss_pred hhHHHHHHHhcCCCHHH--HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-Ccc
Q 009320 221 PEEEELSKKLRSADIAL--QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE-KKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~--~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~-~~~ 296 (537)
.....|++++.+.+.+. +.+|.+.|..+.- .+++..+...| .-.++.+.+ ...++.+...+.+|.++-++ ++.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 34578899998776655 8889999998874 56777777665 333333333 45678899999999999985 567
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
...+++.|+++.++-..+..++.+..+++.+|.|.+.. ...+..|++..+-+=|.-+..+.++-.+..|+.+..-|+.
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 78899999999999999989999999999999998754 4567778877777777777777777888999999999998
Q ss_pred ChhhHHHHHhcC---cHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLN---AVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 375 ~~~n~~~iv~~g---~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
+.+.-..+-+.| .|.+|+..+.-+.....+ ....+|+ ...-++.|+.+|.+ . +.-..++++
T Consensus 337 ~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~-------hd~aQG~----~~d~LqRLvPlLdS---~--R~EAq~i~A 400 (832)
T KOG3678|consen 337 NKEVEREVRKSGTLALVEPLVASLDPGRFARDA-------HDYAQGR----GPDDLQRLVPLLDS---N--RLEAQCIGA 400 (832)
T ss_pred hhhhhHHHhhccchhhhhhhhhccCcchhhhhh-------hhhhccC----ChHHHHHhhhhhhc---c--hhhhhhhHH
Confidence 877766666666 455555544433221100 0011110 11236788888865 3 333344555
Q ss_pred HHHhhcC---C-hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 452 LFALGHG---N-LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 452 L~~L~~~---~-~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
++-.+.. + ........+.|+|+.|-++..+.+......|.+.|..+-+.-|
T Consensus 401 F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 401 FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVP 455 (832)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence 5432221 1 1234566778999999999998888888999999998876543
No 62
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.8e-07 Score=88.93 Aligned_cols=55 Identities=15% Similarity=-0.015 Sum_probs=47.5
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 78 (537)
...+..+.|.||++-+.||--+||||-||=+||..|.... .-||.||+.+++..+
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKV 288 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCcce
Confidence 3444579999999999999999999999999999999874 359999998887654
No 63
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.8e-07 Score=100.29 Aligned_cols=73 Identities=30% Similarity=0.358 Sum_probs=66.1
Q ss_pred CCCCCccccccccccccCCeecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSG 96 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~ 96 (537)
.++|++|..||+..+|+|||++| +|++.||+.|++++-.. .+.|.||.++....+.||..||.-|+.|...++
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 46999999999999999999999 89999999999998774 367889999999999999999999999965543
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.30 E-value=6.9e-05 Score=82.01 Aligned_cols=253 Identities=17% Similarity=0.216 Sum_probs=174.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.+.+.|.+.++.+|..|+.++..+.+.+++. +... .++.+..+|.+.++.++..|+.++..+...++....+.
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~- 190 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI- 190 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH-
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH-
Confidence 356777788999999999999999998765543 2222 68999999999999999999999999911111101111
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
...+..|..++...++-.+..++.+|..++........- ...++.+..++++.++.+...++.++..+.....
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----- 263 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----- 263 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----
Confidence 233455556667788999999999999887655432211 4467788888888788888999999988877655
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL 460 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~ 460 (537)
.-..+++.|+.+|.+.+ .+--++..|..++... ...+. .....+..+.. ..+..++..++.+|..++...
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~--~~d~~Ir~~~l~lL~~l~~~~- 335 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLY--DDDPSIRKKALDLLYKLANES- 335 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHC--SSSHHHHHHHHHHHHHH--HH-
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecC--CCChhHHHHHHHHHhhccccc-
Confidence 44568889999998655 3445888888887754 22222 22334445552 278899999999999998632
Q ss_pred HHHHHHHHCCcHHHHHHHH-HhCCHHHHHHHHHHHHHhhcCC
Q 009320 461 RFKGLAKEARAAEVLREVE-ERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 461 ~~~~~i~~~g~i~~L~~ll-~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+.. +++.|...+ ..+++..++.+...+..++..-
T Consensus 336 n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 336 NVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred chhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 2222 355677766 4447778888888887777553
No 65
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.29 E-value=9.9e-06 Score=70.08 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=105.0
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.||... ...+.+.+++....|.|++. ++.+...+.+..++++++..|...+..+.+.++..|+|++.+..|++.|.
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 35677766 45788889999999999996 57888899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhc
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVL 344 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~ 344 (537)
++++++.++..|+++...+.-.|+.+|..|+... ..+..+...
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 9999999999999999889999999999998654 344445443
No 66
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.27 E-value=5e-05 Score=83.13 Aligned_cols=136 Identities=19% Similarity=0.208 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
...+++.+.+.+...+.-+--.+..+...+++.... ++..+.+-|.++++.++..|+.+|.++.. ++....
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~~~~~--- 114 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIRT-PEMAEP--- 114 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-HHHHHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-cchhhH---
Confidence 345666666677777766666666666655552222 25556666666777777777777777662 111111
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
.++.+..+|.++++-+|..|+.++..+...... .+... .++.|..+|.+.++.++..|+.++..+
T Consensus 115 --l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 --LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp --HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 355666677777777777777777666543221 11112 466677777666777777777777666
No 67
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=1.5e-06 Score=86.21 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=42.5
Q ss_pred Ccccccccccc-ccCCe----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 009320 27 KEFLCPVSGSL-MFDPV----VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI 79 (537)
Q Consensus 27 ~~~~CpI~~~~-m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~ 79 (537)
++-.||+|+.- +..|= +.+|||+||++||.+.|..+..+||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 56789999983 45563 3379999999999998888778999999988776643
No 68
>PHA02926 zinc finger-like protein; Provisional
Probab=98.24 E-value=7.8e-07 Score=82.81 Aligned_cols=56 Identities=9% Similarity=0.018 Sum_probs=44.2
Q ss_pred CCCCccccccccccccC---------CeecCCCccccHHHHHHHHHcC-----CCCCCCCCCCCCCCCCccc
Q 009320 24 QPPKEFLCPVSGSLMFD---------PVVVSTGQTFDRVSVQVCRELG-----FLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~d---------PV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn 81 (537)
...++..|+||++...+ +++.+|+|+||..||.+|.+.. ...||.||..+.. .+|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~--I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN--ITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee--eccc
Confidence 45678999999998754 5778999999999999999752 2369999988753 4444
No 69
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.18 E-value=0.00031 Score=73.85 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=158.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhc-----CChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Cc
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICT-----PNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KK 295 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-----~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~ 295 (537)
+..++..|+ ..+.+.....+..+..+...++..-..+.+ ......++.+|..++.-++..++.+|..+... ..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 356777773 567777777888888888776554444443 35567777888888888999999999888653 22
Q ss_pred cHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHh
Q 009320 296 NKVLIVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHL 372 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nL 372 (537)
+.......-.+.-|...|+++ +...+..++..|..|...+..|..+.+.++++.|+.+|+.. +.+..-.++-+++-|
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL 214 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL 214 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 111111111233455556554 46778888899999999999999888888999999999874 457888999999999
Q ss_pred hcChhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcCh-------hhHHHHHhCCcHHHHHHHHhccCCCCH
Q 009320 373 TLIQSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASN-------EGRSAILDANGVSILVGMLRESGSDSE 442 (537)
Q Consensus 373 s~~~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~-------~~r~~i~~~g~I~~Lv~lL~~~~~~~~ 442 (537)
+..++....+.+.+.|+.|+++++... +..-++.+|.||...+ .....+++.|. ..++..|....-.++
T Consensus 215 SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~De 293 (429)
T cd00256 215 TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDE 293 (429)
T ss_pred hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcH
Confidence 999888888888999999999997543 4444899999998854 12344665555 455566655344556
Q ss_pred HHHH
Q 009320 443 ATRE 446 (537)
Q Consensus 443 ~~~e 446 (537)
++.+
T Consensus 294 dL~e 297 (429)
T cd00256 294 DLTD 297 (429)
T ss_pred HHHH
Confidence 5544
No 70
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00012 Score=83.04 Aligned_cols=242 Identities=15% Similarity=0.166 Sum_probs=161.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHh
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVR 302 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~ 302 (537)
+.+-.+|.|.++..+..|+..|..++....+.-.. .-..+++.++..|.++++.|+..|+.+|..++.+ ...-..-..
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 55666779999999999999999998655443222 2255788888888999999999999999999985 333333344
Q ss_pred cCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHH-HHhccCCHHHHHHHHHHHHHhhcChhhH
Q 009320 303 SGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLM-HALRAESERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 303 ~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
.-.++.|+..+.+ +++.++.+|+.+|.+++.........- =.+.+..++ .++.++++.+++.++++|...+...+..
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 4566788888765 468999999999999986654322211 135555333 3456678899999999999998776665
Q ss_pred HHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHh--cChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 380 VKLVKLNAVATLLTMVKSGE---STSRVLLILCNLA--ASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa--~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
..-.-.-.+|.|.+.|...+ .++..-.++.+++ ...-||+.+.. ...+..+..+..+....++..++.-+...
T Consensus 510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~w 589 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFW 589 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHH
Confidence 55555678999999987433 2222222222222 23346666663 23344554443221224667788888888
Q ss_pred HHhhc-CChHHHHHH
Q 009320 453 FALGH-GNLRFKGLA 466 (537)
Q Consensus 453 ~~L~~-~~~~~~~~i 466 (537)
.++|+ ..+.+...+
T Consensus 590 armc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 590 ARMCRILGDDFAPFL 604 (1075)
T ss_pred HHHHHHhchhhHhHH
Confidence 89998 344454443
No 71
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.16 E-value=1.6e-06 Score=61.25 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=35.4
Q ss_pred ccccccccc---cCCeecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 009320 30 LCPVSGSLM---FDPVVVSTGQTFDRVSVQVCRELGFLPDLENGF 71 (537)
Q Consensus 30 ~CpI~~~~m---~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~ 71 (537)
.|+||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 468899999999999999988 44568999975
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.15 E-value=2.3e-05 Score=67.88 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=122.1
Q ss_pred hcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHH
Q 009320 343 VLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~ 419 (537)
..+.+..||.-.... +.++++....-|.|++..+-|=..+.+..++..++..|.+.+ ..+-+.+.|+|+|..+.+..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 345566777776654 778899999999999999999999999999999999998655 56779999999999999999
Q ss_pred HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 420 AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.|+++++++.++..+.+ ....+...|+.+|..||.++...+..+....++..+.+.-.+.+.+.+--|...|..
T Consensus 94 ~I~ea~g~plii~~lss---p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSS---PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHhcCCceEEeecCC---ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999987 677888899999999998876677777776677766666555555555555555443
No 73
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.15 E-value=6.8e-05 Score=80.21 Aligned_cols=272 Identities=15% Similarity=0.099 Sum_probs=161.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccChHHHHH-----hhcCC--hHHHHHHHHccCCHHHH--HHHHHHHHHhcC-CCcc
Q 009320 227 SKKLRSADIALQEEGVIALRRLTRTNEELRVS-----ICTPN--LLSALRNLVVSRYSIVQ--TNAVASLVNLSL-EKKN 296 (537)
Q Consensus 227 v~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~-----i~~~g--~i~~Lv~lL~s~~~~v~--~~a~~~L~nLs~-~~~~ 296 (537)
.+.+++.+...+..++.+|..+.+.+-+.-.. ..+.| .+...-.+.--.++.+. ..++..-+.++. -..+
T Consensus 238 ~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~skl 317 (678)
T KOG1293|consen 238 TRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKL 317 (678)
T ss_pred hhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhh
Confidence 33446777777788888888776544111111 11222 11111111111122211 122222222331 1233
Q ss_pred HHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHcccC-----cchhhHHhhcCchHHHHHHhccCCHHHHHHH
Q 009320 297 KVLIVRSGFVPLLIDVLKS------GSEESQEHAAGALFSLALE-----DENKMAIGVLGALQPLMHALRAESERTRHDS 365 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~------~~~e~~~~Aa~~L~~Ls~~-----~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A 365 (537)
.....+...++.++++|.. +.++.+.-++.-...+... -.+|..+.+.-....+..+....+.....+|
T Consensus 318 q~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa 397 (678)
T KOG1293|consen 318 QLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAA 397 (678)
T ss_pred hhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHH
Confidence 4444455566666666643 3344333332222222111 1234444433333333333333456667777
Q ss_pred HHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCC
Q 009320 366 ALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDS 441 (537)
Q Consensus 366 ~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~ 441 (537)
+..+.+++.. ..-+...-+..+..+|++++.+++ +..-++++|+||.. ...-|..+...|+|..+..++.. .+
T Consensus 398 ~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~---~~ 474 (678)
T KOG1293|consen 398 LLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD---PD 474 (678)
T ss_pred HHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC---CC
Confidence 7777777753 223334556789999999998776 44558999999987 45789999999999999999988 78
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHCCcHH-HHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 442 EATRENCVAALFALGHGNLRFKGLAKEARAAE-VLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~-~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..++..++++|.++..+.....+......+.. .|..+..+.+..+++++-.+||+|.-..
T Consensus 475 ~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 475 FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 89999999999999997655444433444444 4566788999999999999999998763
No 74
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.9e-06 Score=88.98 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=64.4
Q ss_pred ccccCCCCCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC-----CCcccHHHHHHH
Q 009320 14 FFHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS-----TVIPNLAMKQTI 88 (537)
Q Consensus 14 ~~~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~-----~l~pn~~l~~~i 88 (537)
.+.+..+.+.+++.+|.|-||..++.+||++||||+||+.||.+..+ ...+||.|+.++... ...+|..+..+|
T Consensus 70 ~~~~~~s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li 148 (398)
T KOG4159|consen 70 TPKALLSGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLI 148 (398)
T ss_pred hhhhhhccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHH
Confidence 44455556788899999999999999999999999999999999666 356899999887642 234577777888
Q ss_pred HHHHHH
Q 009320 89 LNWCDT 94 (537)
Q Consensus 89 ~~~~~~ 94 (537)
..|+..
T Consensus 149 ~~F~~~ 154 (398)
T KOG4159|consen 149 TKFLEG 154 (398)
T ss_pred HHhhhh
Confidence 888654
No 75
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.10 E-value=0.00026 Score=75.88 Aligned_cols=152 Identities=13% Similarity=0.151 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHH
Q 009320 233 ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLID 311 (537)
Q Consensus 233 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~ 311 (537)
.+......|+.+++++++.-...|.-+....++.+|++++..++..++..++.+|.|+.. ...-|..+.+.|+|+.|.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 567778888889999998766667677788899999999998999999999999999998 4677999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hhhHHHHHh
Q 009320 312 VLKSGSEESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVK 384 (537)
Q Consensus 312 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~ 384 (537)
++.+.+..+|..+.++|+++..+.+...... ..=....++.+.++++..+++.+...|+||... .+....+++
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999999999999999987655443 222345667778888999999999999998764 444444444
No 76
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00013 Score=79.91 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=165.6
Q ss_pred CCChhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCc
Q 009320 218 PLAPEEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKK 295 (537)
Q Consensus 218 ~~~~~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~ 295 (537)
||..-++.||..|+ ..+.+.+..|+++|..|+.--+.....+++.++||.|+.-|. =...++.+.++.+|-.|+..
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-- 285 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-- 285 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--
Confidence 55667889999995 568999999999999999888888888899999999987554 46678899999999999862
Q ss_pred cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc---chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED---ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
.-..+.++|++-..+..|.--+..++..|..+-.|.+..- +.... ..++|.|..+|...+.+..+.++.++..+
T Consensus 286 H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v---~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV---MEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH---HHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3357888999999999988778888999999999988542 23222 35789999999998888888877777776
Q ss_pred hc----ChhhHHHHHhcCcHHHHHHHhcCC------chHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhc
Q 009320 373 TL----IQSNRVKLVKLNAVATLLTMVKSG------ESTSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 373 s~----~~~n~~~iv~~g~v~~Lv~lL~~~------~~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
+. .++--.++...|.|.-..++|.-. .+-...+..|..+|.. +..+..+...++...|..+|..
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 53 344457777899999999988632 2333466777777764 7777777777777777777754
No 77
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0005 Score=74.93 Aligned_cols=245 Identities=18% Similarity=0.166 Sum_probs=187.4
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccCh------HHH-----------HHhhcCChHHHHHHHHccCCHHHHHHH
Q 009320 223 EEELSKKLR--SADIALQEEGVIALRRLTRTNE------ELR-----------VSICTPNLLSALRNLVVSRYSIVQTNA 283 (537)
Q Consensus 223 ~~~Lv~~L~--s~~~~~~~~A~~~L~~L~~~~~------~~r-----------~~i~~~g~i~~Lv~lL~s~~~~v~~~a 283 (537)
.+.|+..|. ..+++....++..+..+..+++ +.+ .+|...+.|..|+..+...+..|+..+
T Consensus 63 mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~a 142 (970)
T KOG0946|consen 63 MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYA 142 (970)
T ss_pred cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHH
Confidence 467888883 5788888889999998876653 222 234468899999999999999999999
Q ss_pred HHHHHHhcCC--CccHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccC--
Q 009320 284 VASLVNLSLE--KKNKVLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAE-- 357 (537)
Q Consensus 284 ~~~L~nLs~~--~~~k~~i~-~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~-- 357 (537)
+..|.++-.+ .+.+..+. ..-+|..|+.+|......+|-.++-.|..|+.....-..++ =.+++..|+.++...
T Consensus 143 IqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg 222 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGG 222 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999988664 34555555 47899999999998888899999999999998776554555 478999999999864
Q ss_pred --CHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhc-----CCc---h-HHH------HHHHHHHHhcC---h-
Q 009320 358 --SERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVK-----SGE---S-TSR------VLLILCNLAAS---N- 415 (537)
Q Consensus 358 --~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~-----~~~---~-~~~------al~~L~nLa~~---~- 415 (537)
..-+...|+..|.||-. +..|+..+.+.+.||.|.++|. +++ + ..+ ++.++..|..- +
T Consensus 223 ~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~ 302 (970)
T KOG0946|consen 223 LDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSS 302 (970)
T ss_pred CCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 23578899999999876 6788888889999999998885 321 1 122 56677666541 1
Q ss_pred ---hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 416 ---EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 416 ---~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
.+...+.+.+.+..|+.++.+.. -..+++..++-++.+..+++...+....+
T Consensus 303 ~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 303 ITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 24456778888999999887722 46788899999999999988766665553
No 78
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=7e-05 Score=78.24 Aligned_cols=261 Identities=13% Similarity=0.133 Sum_probs=180.5
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccC
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSG 316 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~ 316 (537)
...++.+|..++++-...|.-+..+.++++|+++|+.++..+.--+...++|+.. ....+..+.+.|.+..|+.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 4457778889998888888889999999999999988666666667778888876 566788899999999999999988
Q ss_pred CHHHHHHHHHHHHHcccCcchh--hHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hhh---HHHHHhcC----
Q 009320 317 SEESQEHAAGALFSLALEDENK--MAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSN---RVKLVKLN---- 386 (537)
Q Consensus 317 ~~e~~~~Aa~~L~~Ls~~~~~k--~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n---~~~iv~~g---- 386 (537)
+..+|.+..++|+.+..+.++- -.....-++..++++.+++.-.++...+..|+|+..+ ..| +.-.++..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 8899999999999999887654 3344566788999999988888999999999998653 222 21112221
Q ss_pred cHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhcc---------C---------------
Q 009320 387 AVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRES---------G--------------- 438 (537)
Q Consensus 387 ~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~---------~--------------- 438 (537)
....|++.+...+ ..+..+-+|.+++.+++..+.++. ...+..+.++|... +
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 3344444444322 344467788888887766555432 22233333333110 0
Q ss_pred --------------------------CCCHHHHHHHHHHHHHhhc---CCh------HHHHHHHHCCcHHHHHHHHHhCC
Q 009320 439 --------------------------SDSEATRENCVAALFALGH---GNL------RFKGLAKEARAAEVLREVEERGS 483 (537)
Q Consensus 439 --------------------------~~~~~~~e~A~~~L~~L~~---~~~------~~~~~i~~~g~i~~L~~ll~~~s 483 (537)
..+++.-....+...++.. +.+ +..+++.+.|.-..|+.++.+.+
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 0011222233344444333 111 34567778888888888999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009320 484 QRAKEKAKRILEMLK 498 (537)
Q Consensus 484 ~~~k~~A~~lL~~L~ 498 (537)
+.+++++..+|.+++
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998875
No 79
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.9e-06 Score=80.20 Aligned_cols=55 Identities=11% Similarity=-0.042 Sum_probs=47.1
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHH-HHHcCCCCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQV-CRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~-~~~~~~~~cp~~~~~~~~~~ 77 (537)
+.+-.+|.|+||.+.+.+|+.++|||.||-.||.. |-.+...-||.||+...++.
T Consensus 210 fip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 210 FIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 33345999999999999999999999999999998 88887778999998765543
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=97.96 E-value=0.00055 Score=74.89 Aligned_cols=232 Identities=18% Similarity=0.153 Sum_probs=156.7
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChH---HHHHhhcCChHHHHHHHHcc-------CCHHHHHHHHHHHHHh
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEE---LRVSICTPNLLSALRNLVVS-------RYSIVQTNAVASLVNL 290 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~s-------~~~~v~~~a~~~L~nL 290 (537)
+.+++.++.|++.+.+.+-.++-.+.++.+.++. .++.+.++=+..+|-++|.+ +....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3457889999988877788899999999987653 34457777778999999976 3456788899999999
Q ss_pred cCCCccH--HHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHH
Q 009320 291 SLEKKNK--VLIVRSGFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSAL 367 (537)
Q Consensus 291 s~~~~~k--~~i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~ 367 (537)
+.+++.+ ..|+ +.||.|+.++...+. ++...+..+|..++..++++..+.+.|+++.|++.+.+ .+.....|+.
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 9876543 3444 579999999988776 89999999999999999999999999999999999988 5667888999
Q ss_pred HHHHhhcChhhHHHHHhc----CcHHHHHHHhcC--CchHHHHHHHHHHHhcChhhH--HH----HHhCCcHHHHHHHHh
Q 009320 368 ALYHLTLIQSNRVKLVKL----NAVATLLTMVKS--GESTSRVLLILCNLAASNEGR--SA----ILDANGVSILVGMLR 435 (537)
Q Consensus 368 aL~nLs~~~~n~~~iv~~----g~v~~Lv~lL~~--~~~~~~al~~L~nLa~~~~~r--~~----i~~~g~I~~Lv~lL~ 435 (537)
+|.+++........--.. .+++.+-..+.. +...-..+..|..+-...+.. .. -+-.....-|..+|.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 999987643311110111 233334333332 223334566666654333211 11 111222345555666
Q ss_pred ccCCCCHHHHHHHHHHHHHhhc
Q 009320 436 ESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 436 ~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
++ -.+..|..++.....|..
T Consensus 242 sr--~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 242 SR--LTPSQRDPALNLAASLLD 261 (543)
T ss_pred cC--CCHHHHHHHHHHHHHHHH
Confidence 63 345556666555555443
No 81
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.2e-05 Score=84.81 Aligned_cols=71 Identities=27% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCCccccccccccccCCeecCC-CccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVST-GQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~-G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
.++|++|+.|++..+|+|||++|+ |.|.+|+.|..++-.+ .+.|..|.|++..+.+||-.||+-|..|...
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 579999999999999999999976 7999999999988764 3678899999999999999999999998443
No 82
>PTZ00429 beta-adaptin; Provisional
Probab=97.90 E-value=0.0034 Score=70.86 Aligned_cols=257 Identities=11% Similarity=0.048 Sum_probs=166.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
..-..+++.+.+.+.+.+....-.|.++++.+++.-.. ++..|.+-+.++++.++..|+++|.++-.. .+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH
Confidence 34467788888899999988888888888766554222 367778888889999999999998887641 22
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
++ -.++++.+.|.+.++-+|..|+-++..+-..+. ..+.+.+.++.|.++|.+.++.+..+|+.+|..+........
T Consensus 138 ~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 138 LE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 22 235677888889999999999999998854433 233456788999999999999999999999999976433322
Q ss_pred HHHhcCcHHHHHHHhcCCc-h-HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 381 KLVKLNAVATLLTMVKSGE-S-TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~-~-~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
-...+.+..|+..|.+-+ + +...+.+|... .++..... ...+..+...|.+ .++.+.-.|+.++..+...
T Consensus 215 -~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~---~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 215 -ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSH---QNPAVVMGAIKVVANLASR 286 (746)
T ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCc
Confidence 123455666777775433 2 33355555332 22221111 1345566666666 5678888888888877653
Q ss_pred C-hH-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 459 N-LR-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 459 ~-~~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
. .. ....+. .+...|+.| .++++++|--+..-|..+....
T Consensus 287 ~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 287 CSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred CCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC
Confidence 2 11 111111 122344444 3455666666665555555443
No 83
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=2.7e-06 Score=84.16 Aligned_cols=68 Identities=12% Similarity=-0.022 Sum_probs=54.6
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDF-STVIPNLAMKQTILNW 91 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~ 91 (537)
.+-.+|.||||++|.+--.++ .|+|-||+.||-.-+..++..||.|++.+-. ..|.+....-.+|.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345579999999999988876 7999999999999899999999999988754 3566655555566543
No 84
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.86 E-value=0.0021 Score=66.94 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=169.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHcccCcchhhHH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSG--SEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
..+.+..++-+++.+++..+.+++..+..+++....+.+.+.---++.-|... +...|++|...++.+....++...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 34444445555569999999999999999888888888877555555666543 466789999999888665433222
Q ss_pred hhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHH
Q 009320 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~ 419 (537)
...+++..++.+....++..+..|+.+|..|+... -..++.+|++..|++.+.++. ..+.++.++..+-..|..|.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 24578889999999988999999999999988642 344568999999999998753 55668889999999999999
Q ss_pred HHHhCCcHHHHHHHHhccC----CCCH--HHHHHHHHHHHHhhcCChHHHHHHHH-CCcHHHHHHHHHhCCHHHHHHHHH
Q 009320 420 AILDANGVSILVGMLRESG----SDSE--ATRENCVAALFALGHGNLRFKGLAKE-ARAAEVLREVEERGSQRAKEKAKR 492 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~----~~~~--~~~e~A~~~L~~L~~~~~~~~~~i~~-~g~i~~L~~ll~~~s~~~k~~A~~ 492 (537)
.+...--+..+..-+.+.+ .++. +--..+..++..+-+.=.+.-....+ ..++..|+..+...++++++....
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 8886544666666554421 1222 12333444444443321122222222 256888999999999999999999
Q ss_pred HHHHhhcCC-CC--CcchhhhhhhhcCCc
Q 009320 493 ILEMLKGRE-DD--DEDVDWEGVLDSGGL 518 (537)
Q Consensus 493 lL~~L~~~~-~e--~~~~d~~~v~~~g~~ 518 (537)
+|--+-.-+ +. ++.........+|..
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~ 291 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRF 291 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccc
Confidence 985555443 32 122223445555554
No 85
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00033 Score=75.00 Aligned_cols=274 Identities=17% Similarity=0.148 Sum_probs=182.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh-c---CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-T---PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~---~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+..+.|.+.|.+.+...++-|..+|..++.++.+.-..-. . .-.+|.++.+.++.++.++..|+.++-..-....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 3468899999999999999999999999966544322211 1 2357888889899999999999998876665432
Q ss_pred HHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...+.. ..+++.|..+-...++++|.+.|.+|..|......|..=--.++++-++..-.+.++.+...|+.....++..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 223332 4567777777778889999999999998876554432222245666667777777888889999988889887
Q ss_pred hhhHHHHHh--cCcHHHHHHHh----------cC-Cc-------------------------------------------
Q 009320 376 QSNRVKLVK--LNAVATLLTMV----------KS-GE------------------------------------------- 399 (537)
Q Consensus 376 ~~n~~~iv~--~g~v~~Lv~lL----------~~-~~------------------------------------------- 399 (537)
+-.+..+.. ...||.|++-+ .+ .+
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 755544443 46888888632 20 00
Q ss_pred ----hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHCCcHH
Q 009320 400 ----STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES-GSDSEATRENCVAALFALGHGNL-RFKGLAKEARAAE 473 (537)
Q Consensus 400 ----~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~-~~~~~~~~e~A~~~L~~L~~~~~-~~~~~i~~~g~i~ 473 (537)
.+.-.+++|.-|+ .+.....++.+..+|+.. ....-.++|.++-+|.+++.+-- .....+ ...++
T Consensus 367 ~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip 437 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL--PELIP 437 (885)
T ss_pred ccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch--HHHHH
Confidence 0000112222111 122334445555555431 11566789999999999987532 111111 13578
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 474 VLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 474 ~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
.|+.++.+..+-+|...++.|...+.+--.+
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWVVQD 468 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhHhcC
Confidence 8899999999999999999998888765443
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.84 E-value=0.0035 Score=66.12 Aligned_cols=210 Identities=19% Similarity=0.085 Sum_probs=143.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|.+.+..++..+++.|..+- ..+..+.|+.+|.+.++.++..++.++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HR 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hc
Confidence 567788887777777777777665432 23557888888888888888877766665 11
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
....+.|..+|++.++.++..|+.+|..+- ....++.|...+.+.++.++..|+.+|..+-.
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------- 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------- 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence 234568888898889999999999997663 34567778888888899999999988854422
Q ss_pred HhcCcHHHHHHHhc-CCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH
Q 009320 383 VKLNAVATLLTMVK-SGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR 461 (537)
Q Consensus 383 v~~g~v~~Lv~lL~-~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~ 461 (537)
..++..++.+.. .+......+..+..+.. ...+++.|..+++. +.++..++.+|..+-.
T Consensus 208 --~~A~~~l~~~~~~~g~~~~~~l~~~lal~~---------~~~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~---- 267 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG---------GPDAQAWLRELLQA-----AATRREALRAVGLVGD---- 267 (410)
T ss_pred --HhHHHHHHHHHhccCccHHHHHHHHHHhCC---------chhHHHHHHHHhcC-----hhhHHHHHHHHHHcCC----
Confidence 234556666343 33333344333333332 12556778888865 3478888888776532
Q ss_pred HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 462 FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 462 ~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
...++.|+..+. ++.+++.|.+.++.+++-.
T Consensus 268 -------p~av~~L~~~l~--d~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 268 -------VEAAPWCLEAMR--EPPWARLAGEAFSLITGMD 298 (410)
T ss_pred -------cchHHHHHHHhc--CcHHHHHHHHHHHHhhCCC
Confidence 235667777665 4449999999999999854
No 87
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1e-05 Score=84.13 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=56.2
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHcC----CCCCCCCCCCCCCCCCcccH----HHHHHHHHHHHHcC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELG----FLPDLENGFKPDFSTVIPNL----AMKQTILNWCDTSG 96 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~----~~~cp~~~~~~~~~~l~pn~----~l~~~i~~~~~~~~ 96 (537)
.+..||||++-..=|+.+.|||.||=.||.++|..+ ...||.|+..+..++|.|-+ .-+.-++..+..||
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 378999999999999999999999999999976543 45799999998887776643 22444666677777
No 88
>PTZ00429 beta-adaptin; Provisional
Probab=97.80 E-value=0.01 Score=67.03 Aligned_cols=250 Identities=15% Similarity=0.126 Sum_probs=162.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH-HHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIAL-RRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L-~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+.+|-+.|++.+...+..|++.+ ..++... +. ..+.+-+++++.+++.+++.-..-.|.+.+........+
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 35677788888888888888754 4444432 22 124566677888899999998888888887643333223
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.+..|.+=+.+.++-+|..|.++|..+-... + -.-.++.+.+.|.+.++.+++.|+.++..+-.... ..
T Consensus 106 ---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--el 174 (746)
T PTZ00429 106 ---AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QL 174 (746)
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cc
Confidence 2567888888899999999999998774321 1 12245667788888899999999999999865322 23
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
+.+.|.++.|.++|.+.+ +...|+.+|..++.....+- -...+.+..|+..|.. .++..+-..+.+|....-.+
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e---~~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE---CNEWGQLYILELLAAQRPSD 250 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc---CChHHHHHHHHHHHhcCCCC
Confidence 346789999999997655 56778999988875432221 1223445666666655 56777776666664322111
Q ss_pred hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 460 LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 460 ~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
. ..+ ...+..+...+++.++.+.-.|..++-.+...
T Consensus 251 ~---~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 251 K---ESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred c---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1 111 13445555566667777776676666655543
No 89
>PF05536 Neurochondrin: Neurochondrin
Probab=97.79 E-value=0.00073 Score=73.92 Aligned_cols=150 Identities=18% Similarity=0.146 Sum_probs=115.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcc----hhhHHhhcCchHHHHHHhccC-------CHHHHHHHHHHHHHhhc
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDE----NKMAIGVLGALQPLMHALRAE-------SERTRHDSALALYHLTL 374 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~I~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~nLs~ 374 (537)
++.-+++|+..+.+-|-.+...+..+....+ .+..|.+.=++.-|-++|+.+ ....+.-|+..|..+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5566788888886666677777777776544 234566665678888999874 23456778888889999
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
.++....---.+-||.|++.+... .+...|+.+|..++..++|+..+.+.|+|+.|++++.+ .+...+.|+.+
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~Al~l 162 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQMEIALNL 162 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHHHHHHH
Confidence 776653333346899999999643 46788999999999999999999999999999999986 55679999999
Q ss_pred HHHhhcCC
Q 009320 452 LFALGHGN 459 (537)
Q Consensus 452 L~~L~~~~ 459 (537)
|.+++...
T Consensus 163 L~~Lls~~ 170 (543)
T PF05536_consen 163 LLNLLSRL 170 (543)
T ss_pred HHHHHHhc
Confidence 99998743
No 90
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.78 E-value=2.3e-05 Score=61.81 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCccccccccccccCC-------------eecCCCccccHHHHHHHHHcCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDP-------------VVVSTGQTFDRVSVQVCRELGFLPDLENG 70 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 70 (537)
.++- |+||++-|.|| +..+|||.|-..||.+|++... +||.||
T Consensus 18 ~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 18 ADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred cCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 4443 99999999665 3358999999999999998754 899996
No 91
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.73 E-value=2.6e-05 Score=81.69 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=56.4
Q ss_pred CCCCCCccccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc-HHHHHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN-LAMKQTILNW 91 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn-~~l~~~i~~~ 91 (537)
+-.+.+++.||||..++.||+. +.|||.||+.||..|... +..||.|+.........|+ ..+++.+..|
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 3447788999999999999999 599999999999999988 6689999888776666652 3456666655
No 92
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.72 E-value=1.7e-05 Score=78.27 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=53.9
Q ss_pred CCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC----CcccHHHHHHHHHH
Q 009320 25 PPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFST----VIPNLAMKQTILNW 91 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~----l~pn~~l~~~i~~~ 91 (537)
+=.+..|++|..+|.|+-++ .|=|||||+||-+++.. ...||.|...+..+. +.+..+|+.++...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 35578999999999999865 78999999999999988 668999998776654 55667777777554
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.013 Score=66.01 Aligned_cols=252 Identities=15% Similarity=0.096 Sum_probs=169.0
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 224 EELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 224 ~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+-++..|. ..++..+..|+..+..++. +.++-..+.+.|.+..|+.+|++ -+..++.++.+|..|+.+.+....-++
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 44555553 4677888889998888874 56677778889999999999876 456789999999999998887777777
Q ss_pred cCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcc--h------------------------------------------
Q 009320 303 SGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDE--N------------------------------------------ 337 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~--~------------------------------------------ 337 (537)
.|++.-+..++... +.+.|..++..|..|..+.- .
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~ 1931 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNE 1931 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCH
Confidence 88888888877654 47778888888777732210 0
Q ss_pred ----------------------------------------------------hhHHhh------------cCchHHHHHH
Q 009320 338 ----------------------------------------------------KMAIGV------------LGALQPLMHA 353 (537)
Q Consensus 338 ----------------------------------------------------k~~I~~------------~g~l~~Lv~l 353 (537)
|..+.. .+.++.++++
T Consensus 1932 ~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lel 2011 (2235)
T KOG1789|consen 1932 VTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLEL 2011 (2235)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHH
Confidence 000000 0111122222
Q ss_pred hccCCHH--HHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhc--CCchHHHHHHHHHHHhcChhhHHHHHhCCcHH
Q 009320 354 LRAESER--TRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVK--SGESTSRVLLILCNLAASNEGRSAILDANGVS 428 (537)
Q Consensus 354 L~~~~~~--~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~--~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~ 428 (537)
|...+++ ....-..|+..|.. .+....++-..|.+|.++..+. .......|+.+|..|+...-..+++....++.
T Consensus 2012 m~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~ 2091 (2235)
T KOG1789|consen 2012 MSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCID 2091 (2235)
T ss_pred hcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccch
Confidence 2222111 11111123333332 3444555566889999998774 34466779999999999998999999888888
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHHHHHh
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGN-LRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
.++..|.. .....-.|+.+|..+...+ ......+...|.++.|+.++..
T Consensus 2092 ~~m~~mkK----~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2092 GIMKSMKK----QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred hhHHHHHh----cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 89998876 3445568888888887633 3344455678999999998764
No 94
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.68 E-value=5.5e-05 Score=73.02 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=54.4
Q ss_pred cccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCC-CCCCCCCcccHHHHHHHHHHHHHc
Q 009320 29 FLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGF-KPDFSTVIPNLAMKQTILNWCDTS 95 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~-~~~~~~l~pn~~l~~~i~~~~~~~ 95 (537)
+.||+|..|.++|+-+ .|||+||..||+.-+-+-...||.|.. .+--..|.|.+..+.-|+.+..++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 779999999999865544557998854 223346999999999998887644
No 95
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.64 E-value=0.0062 Score=62.52 Aligned_cols=229 Identities=16% Similarity=0.179 Sum_probs=160.8
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 226 LSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 226 Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
|...+. +.+.+-..-|+++|..+.+. ++.|..+..+.++..|+..+.+ .+..+|-..+.++.-|+.++...+.+..
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~ 239 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR 239 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh
Confidence 444444 46777777899999999975 5788888888899999998843 3678899999999999999988888877
Q ss_pred cCCHHHHHHHHccCC-HHHHHHHHHHHHHcccCcc---hhhHHh---hcCchHHHHHHhccC---CHHHHHHH-------
Q 009320 303 SGFVPLLIDVLKSGS-EESQEHAAGALFSLALEDE---NKMAIG---VLGALQPLMHALRAE---SERTRHDS------- 365 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~---~k~~I~---~~g~l~~Lv~lL~~~---~~~~~~~A------- 365 (537)
.+.++.|+.+++... ..+..-.++++.|+....+ .+..+. -.+-++.-++.|... ++.....-
T Consensus 240 ~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 240 FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 899999999998754 4566677888888875542 222222 234445555666543 33221111
Q ss_pred HHHHHHhhc------------------------ChhhHHHHHhc--CcHHHHHHHhcCCc---hHHHHHHHHHHHhc-Ch
Q 009320 366 ALALYHLTL------------------------IQSNRVKLVKL--NAVATLLTMVKSGE---STSRVLLILCNLAA-SN 415 (537)
Q Consensus 366 ~~aL~nLs~------------------------~~~n~~~iv~~--g~v~~Lv~lL~~~~---~~~~al~~L~nLa~-~~ 415 (537)
-.-.-.||+ +.+|...+-+. .++..|+.+|+..+ ...-|+-=|..... .|
T Consensus 320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP 399 (442)
T KOG2759|consen 320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP 399 (442)
T ss_pred HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc
Confidence 011111221 24566777764 58999999997433 33335555555554 78
Q ss_pred hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 416 EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 416 ~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
+|+..+.+-|+=+.+.++|.. .+++++-+|+.++..|..+
T Consensus 400 ~gk~vv~k~ggKe~vM~Llnh---~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 400 EGKAVVEKYGGKERVMNLLNH---EDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hHhHHHHHhchHHHHHHHhcC---CCchHHHHHHHHHHHHHhh
Confidence 999999999999999999998 8999999999998877543
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.61 E-value=0.02 Score=59.76 Aligned_cols=267 Identities=19% Similarity=0.133 Sum_probs=175.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+.+...+-+++.+++..+.+.+|.+..+ ...-..+...++--+++.-|.. ++..-++.|+..+..+....++... .
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence 3444455455588999999999988864 4555556666655666666643 3455678899888776554332222 2
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
-.|.+..|+.+..+.+...+..+..+|..++..+. ..+...|++..|++.+-++........+.++..+-..+..|..
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKY 183 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhh
Confidence 45788999999999889999999999999987653 2455789999999999887666777888889898888888877
Q ss_pred HHhcCcHHHHHHHhcCC--------c---hHHHHHHHHHHHhcChhhHHHHHhC--CcHHHHHHHHhccCCCCHHHHHHH
Q 009320 382 LVKLNAVATLLTMVKSG--------E---STSRVLLILCNLAASNEGRSAILDA--NGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~--------~---~~~~al~~L~nLa~~~~~r~~i~~~--g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
+...--+..++.-+.+. . ....+..++..+-..=.|--.+... .++..|+..|.. ..+++++..
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~---p~~~ir~~I 260 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL---PNPEIRKAI 260 (371)
T ss_pred hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC---CCHHHHHHH
Confidence 66533444444443322 1 1111333333332222222222222 457777777766 566677777
Q ss_pred HHHHHHhhcC------------------C-h---------------------------------HHHHHHHHCCcHHHHH
Q 009320 449 VAALFALGHG------------------N-L---------------------------------RFKGLAKEARAAEVLR 476 (537)
Q Consensus 449 ~~~L~~L~~~------------------~-~---------------------------------~~~~~i~~~g~i~~L~ 476 (537)
+.+|..+-.- + . -...+..+.|.++.|+
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~ 340 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALV 340 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHH
Confidence 7776665320 0 0 0123455899999999
Q ss_pred HHHHhC-CHHHHHHHHHHHHHh
Q 009320 477 EVEERG-SQRAKEKAKRILEML 497 (537)
Q Consensus 477 ~ll~~~-s~~~k~~A~~lL~~L 497 (537)
++..+. ++...++|.-+|..+
T Consensus 341 ~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 341 ELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHhcCCCchHHHHHHHHHHHH
Confidence 998877 889999999888543
No 97
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.61 E-value=0.00012 Score=50.68 Aligned_cols=40 Identities=28% Similarity=0.223 Sum_probs=37.6
Q ss_pred ChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 009320 252 NEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLS 291 (537)
Q Consensus 252 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs 291 (537)
+++++..+.+.|++|.|+.+|.+.+.+++..|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999997
No 98
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.58 E-value=7.5e-05 Score=51.72 Aligned_cols=39 Identities=49% Similarity=0.512 Sum_probs=36.9
Q ss_pred CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 294 KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 294 ~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
++++..+++.|++++|+.+|.+++.++++.|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999999999999986
No 99
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.57 E-value=0.0097 Score=63.78 Aligned_cols=256 Identities=17% Similarity=0.151 Sum_probs=167.8
Q ss_pred HHHHHHhhccChHHHHHhhcCChHHHHHHHH----------ccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHH
Q 009320 242 VIALRRLTRTNEELRVSICTPNLLSALRNLV----------VSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLI 310 (537)
Q Consensus 242 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv 310 (537)
+.+|+-++++ +.....+....++..|.++- ...+..+..+|+.+|.|+-. ++..+..+++.|..+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567777764 34455555555566666654 24578899999999999988 567788888999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHcccC-cchhhHHh-hcCchHHHHHHhccC-----------------CHHHHHHHH
Q 009320 311 DVLKSG-----SEESQEHAAGALFSLALE-DENKMAIG-VLGALQPLMHALRAE-----------------SERTRHDSA 366 (537)
Q Consensus 311 ~lL~~~-----~~e~~~~Aa~~L~~Ls~~-~~~k~~I~-~~g~l~~Lv~lL~~~-----------------~~~~~~~A~ 366 (537)
..|+.. +.+..-...++|+-++.. .+.+..+. +.+++..|+..|... .......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 788889999999998864 45666666 457777777766431 223566789
Q ss_pred HHHHHhhcChhhHHHHHhcCcHHHHHHHhcC--------Cc---hHHHHHHHHHHHhcChhhHHHH--------------
Q 009320 367 LALYHLTLIQSNRVKLVKLNAVATLLTMVKS--------GE---STSRVLLILCNLAASNEGRSAI-------------- 421 (537)
Q Consensus 367 ~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~--------~~---~~~~al~~L~nLa~~~~~r~~i-------------- 421 (537)
++++|+.........--....++.++.++.. .. ....++.+|.|+-. +....+
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl--~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL--ECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh--HHHhhhhcccCCcccccCCC
Confidence 9999987643322221223445555544321 11 23336666666521 111111
Q ss_pred HhCCcHHHHHHHHhcc---CC--CCHHHHHHHHHHHHHhhcCChHHHHHHHH----------------CCcHHHHHHHHH
Q 009320 422 LDANGVSILVGMLRES---GS--DSEATRENCVAALFALGHGNLRFKGLAKE----------------ARAAEVLREVEE 480 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~---~~--~~~~~~e~A~~~L~~L~~~~~~~~~~i~~----------------~g~i~~L~~ll~ 480 (537)
.....+..|+.+|... .. .-.....-.+.+|..++..+...++.++. ...-..|++++-
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 1223467777777541 00 11244556677888888776666666553 345678999988
Q ss_pred hCCHHHHHHHHHHHHHhhcC
Q 009320 481 RGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 481 ~~s~~~k~~A~~lL~~L~~~ 500 (537)
+..+.+|..++.+|..|++.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CCCchHHHHHHHHHHHHHhh
Confidence 88899999999999999865
No 100
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=3e-05 Score=84.59 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=48.4
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
.-+.||.|..=.+|-|++-|||-||-.||+.-+....+.||.|+..|..-++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 348899999999999999999999999999988877789999999998766655
No 101
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.009 Score=68.23 Aligned_cols=265 Identities=18% Similarity=0.165 Sum_probs=165.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChH----HHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLL----SALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKV 298 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i----~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~ 298 (537)
+.|+...+|.++..|+.|+..|..+...-... ..+.+ +.+.+-+.+.+..++..|+.++..++. .+.++.
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 44555557899999999999999987532111 12223 344444445555599999999988876 344544
Q ss_pred HHHh-cCCHHHHHHHH----ccCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHH
Q 009320 299 LIVR-SGFVPLLIDVL----KSGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHALRAE--SERTRHDSALAL 369 (537)
Q Consensus 299 ~i~~-~g~v~~Lv~lL----~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL 369 (537)
..-. ...+|.++..+ ..++.+....+..+|..|+.... .+..+. .++..-+.+..+. +..++..|+..|
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 4433 34566666655 45666666667777777665443 222221 2444445555554 577899999999
Q ss_pred HHhhcChhhHHHHH-h--cCcHHHHHHHhcCCc------------------hHHHHHHHHHHHhcChhhHHHHHhCCcHH
Q 009320 370 YHLTLIQSNRVKLV-K--LNAVATLLTMVKSGE------------------STSRVLLILCNLAASNEGRSAILDANGVS 428 (537)
Q Consensus 370 ~nLs~~~~n~~~iv-~--~g~v~~Lv~lL~~~~------------------~~~~al~~L~nLa~~~~~r~~i~~~g~I~ 428 (537)
..++.......+.. . .-.++.++.++.+.. ...-|..+|..|+.+=.++..+- -..+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p--~~~~ 351 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP--PLFE 351 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH--HHHH
Confidence 88887622211111 1 235566666553210 11226677777766544433322 2245
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+-.++.+ .+...|..++.+|..++.+..+...-. =..+++.++..+.+..+++|-.|..++-.++..-
T Consensus 352 ~l~~~l~S---~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 352 ALEAMLQS---TEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 66667776 788899999999999988765432221 1356777777899999999999999998888654
No 102
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.015 Score=57.55 Aligned_cols=231 Identities=18% Similarity=0.171 Sum_probs=150.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.+.+++....+ ...|+..|-|++.. ...|..+... .+..++.++......+....+..|.||+.++.....+..
T Consensus 46 lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~ 121 (353)
T KOG2973|consen 46 LKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLT 121 (353)
T ss_pred HHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHH
Confidence 3556666654433 56788999999964 4555555444 888889988877667788899999999997765444332
Q ss_pred --c----CCHHHHHHHH-ccC-C-HHHHHHHHHHHHHcccCcchhhHHhhcCchH-HHHHHhccCCHHHHH-HHHHHHHH
Q 009320 303 --S----GFVPLLIDVL-KSG-S-EESQEHAAGALFSLALEDENKMAIGVLGALQ-PLMHALRAESERTRH-DSALALYH 371 (537)
Q Consensus 303 --~----g~v~~Lv~lL-~~~-~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~-~Lv~lL~~~~~~~~~-~A~~aL~n 371 (537)
. .++..++..+ ..+ + ..--.+.+-++.+|+.....|..+.....++ .-+..+.+.+..+++ ..+.+|.|
T Consensus 122 ~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN 201 (353)
T KOG2973|consen 122 NLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKN 201 (353)
T ss_pred hcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHh
Confidence 2 3444555444 332 2 1233566788899999999988888654322 222223344445554 55779999
Q ss_pred hhcChhhHHHHHhc--CcHHHHHHHhc----------------------------CCchHHHHHHHHHHHhcChhhHHHH
Q 009320 372 LTLIQSNRVKLVKL--NAVATLLTMVK----------------------------SGESTSRVLLILCNLAASNEGRSAI 421 (537)
Q Consensus 372 Ls~~~~n~~~iv~~--g~v~~Lv~lL~----------------------------~~~~~~~al~~L~nLa~~~~~r~~i 421 (537)
.|....+...+... .++|.++--|. ++.++...+.+|..||....||..+
T Consensus 202 ~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~l 281 (353)
T KOG2973|consen 202 CCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVL 281 (353)
T ss_pred hhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHH
Confidence 99998888887763 35555553221 0124556799999999999999999
Q ss_pred HhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 422 LDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
++.|+- .+++-+... ..++++++.+-.+.--|....
T Consensus 282 R~kgvY-pilRElhk~-e~ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 282 RSKGVY-PILRELHKW-EEDEDIREACEQVVQMLVRLE 317 (353)
T ss_pred HhcCch-HHHHHHhcC-CCcHHHHHHHHHHHHHHHhcc
Confidence 987764 455555542 256777776666655555533
No 103
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.039 Score=57.07 Aligned_cols=237 Identities=19% Similarity=0.209 Sum_probs=168.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh---------HHHHHhhcCChHHHHHHHHcc---C---CHHHHHHHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNE---------ELRVSICTPNLLSALRNLVVS---R---YSIVQTNAVA 285 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~---------~~r~~i~~~g~i~~Lv~lL~s---~---~~~v~~~a~~ 285 (537)
..++.|+..|..++.+.....+..|..|+..+. ..-..+.+.+++++|+.-+.- . ...-..++++
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 357889999988999999999999999986541 122334678889999887642 1 1223456677
Q ss_pred HHHHhcC-CCccHHHHHhcCCHHHHHHHHccC-C-HHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhcc---CC
Q 009320 286 SLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSG-S-EESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRA---ES 358 (537)
Q Consensus 286 ~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~-~-~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~---~~ 358 (537)
++-|+.. .++....+++.|.+.-|++.+... . ..-+..|..+|.-+-.+.+ ++...+...++..|++-+.- .+
T Consensus 205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d 284 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD 284 (536)
T ss_pred HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence 7888877 456677788888887777755433 2 3456777777777665544 88888888888888777642 12
Q ss_pred ------HHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-hHHHHHHHHHHHhcChhh---HHHHHhCCcHH
Q 009320 359 ------ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-STSRVLLILCNLAASNEG---RSAILDANGVS 428 (537)
Q Consensus 359 ------~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-~~~~al~~L~nLa~~~~~---r~~i~~~g~I~ 428 (537)
.+..++....|+.+-..+.|+...+...+++.+.-+++... ....++.+|-.....+++ ...+++..++.
T Consensus 285 P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLr 364 (536)
T KOG2734|consen 285 PATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLR 364 (536)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHH
Confidence 24567777788888889999999999988888777776543 344489999888877764 55678888888
Q ss_pred HHHHHHhccC-------CCCHHHHHHHHHHHHHhhc
Q 009320 429 ILVGMLRESG-------SDSEATRENCVAALFALGH 457 (537)
Q Consensus 429 ~Lv~lL~~~~-------~~~~~~~e~A~~~L~~L~~ 457 (537)
.+..+..... ......-+..+.+|+.+-.
T Consensus 365 tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 365 TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 8877665211 1234566788888888765
No 104
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=5.9e-05 Score=73.24 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=45.4
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHH
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMK 85 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~ 85 (537)
-|.|-||++.|.+||++.|||+||..|-.+.++.+ .+|++|.+.... .+.+...|.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~ 296 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELL 296 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHH
Confidence 48899999999999999999999999988887774 489999887654 444444443
No 105
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.024 Score=58.56 Aligned_cols=254 Identities=19% Similarity=0.173 Sum_probs=169.5
Q ss_pred HHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC------ccHH----HHHhcCCHHHHH
Q 009320 241 GVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK------KNKV----LIVRSGFVPLLI 310 (537)
Q Consensus 241 A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~------~~k~----~i~~~g~v~~Lv 310 (537)
.+..+..++ .-|+.-..+.+-.+++.|+.+|.+.+.++....+..|-.|...+ +... .+++.++++.|+
T Consensus 104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 455566666 34677777889999999999999999999999999999988522 2233 345568888888
Q ss_pred HHHccCCH------HHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHhhc-ChhhHH
Q 009320 311 DVLKSGSE------ESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHLTL-IQSNRV 380 (537)
Q Consensus 311 ~lL~~~~~------e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~-~~~n~~ 380 (537)
.-+..=+. ....++..++-|+.... .....+++.|.+.-|+.-+... -..-+..|...|.-+-. ..+|+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 76654222 23455667777776544 4556666777777666644332 22345667777766555 445888
Q ss_pred HHHhcCcHHHHHHHhc-----CC------chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 381 KLVKLNAVATLLTMVK-----SG------ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~-----~~------~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
......++..|++-+. ++ .+.+.....|+.+-..+.+|..+....+++...=+++. -...+..++
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----Kk~sr~Sal 338 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----KKVSRGSAL 338 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----HHHhhhhHH
Confidence 8888999999998774 21 13455777888888899999999988887666555554 345677888
Q ss_pred HHHHHhhcCCh--HHHHHHHHCCcHHHHHHH-HHhCC---------HHHHHHHHHHHHHhhc
Q 009320 450 AALFALGHGNL--RFKGLAKEARAAEVLREV-EERGS---------QRAKEKAKRILEMLKG 499 (537)
Q Consensus 450 ~~L~~L~~~~~--~~~~~i~~~g~i~~L~~l-l~~~s---------~~~k~~A~~lL~~L~~ 499 (537)
.+|-....+.+ ..+.-..+.++...+..+ ++... ...-+....+|+.|-.
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 99988887654 344455566666666554 53222 2333555566644443
No 106
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0074 Score=65.07 Aligned_cols=274 Identities=16% Similarity=0.131 Sum_probs=173.7
Q ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 009320 216 MTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK 295 (537)
Q Consensus 216 ~~~~~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~ 295 (537)
..|+..-++.++++.+..++..+..|+.++..+--.... .-...-...++.|..+-.+.+++|+.+.|.+|..|.....
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH
Confidence 356666788999999999999999999998876532211 1122223456667777678899999999999998875322
Q ss_pred cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccC--C--------H----
Q 009320 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAE--S--------E---- 359 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~--~--------~---- 359 (537)
.|..=.-.++++-++...+..+.++-..||.....++..+-.+..+.. ...+|.|+.-+.-. + +
T Consensus 248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 221111246677778888888888999999999999999877777764 35667666533210 0 0
Q ss_pred ------------------------------------------HHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc-
Q 009320 360 ------------------------------------------RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK- 396 (537)
Q Consensus 360 ------------------------------------------~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~- 396 (537)
..++..+++|--|+ .+....+++.++.+|+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKE 400 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHH
Confidence 12333333433332 2234455666666554
Q ss_pred ---CCchHHH--HHHHHHHHhcChhhHHHHHhC--CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC--ChHHHHHHH
Q 009320 397 ---SGESTSR--VLLILCNLAASNEGRSAILDA--NGVSILVGMLRESGSDSEATRENCVAALFALGHG--NLRFKGLAK 467 (537)
Q Consensus 397 ---~~~~~~~--al~~L~nLa~~~~~r~~i~~~--g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~--~~~~~~~i~ 467 (537)
..++..+ ++-+|..++.. +-+.++.. ..|+.|+.+|.+ ..+-+|..++|+|...+.. .....+...
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~D---KkplVRsITCWTLsRys~wv~~~~~~~~f~ 475 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDD---KKPLVRSITCWTLSRYSKWVVQDSRDEYFK 475 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhcc---CccceeeeeeeeHhhhhhhHhcCChHhhhH
Confidence 4444333 44444433321 22223322 347888888987 6788899999998877652 111112221
Q ss_pred HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 468 EARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 468 ~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
-++..|+..+-+++.++|+.|+.....|-+...++
T Consensus 476 --pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 476 --PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence 23444555567899999999999999998876554
No 107
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.29 E-value=0.034 Score=59.63 Aligned_cols=227 Identities=18% Similarity=0.159 Sum_probs=151.6
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-----CHHHHHHHHHHHHHhcC-CCccHHHHHh-c
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-----YSIVQTNAVASLVNLSL-EKKNKVLIVR-S 303 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~v~~~a~~~L~nLs~-~~~~k~~i~~-~ 303 (537)
...+.....+|+++|.|+...++..|..+.+.|..+.++..|+.. +.++.--..++|.-++. ....+..+++ .
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 356778889999999999999999999999999999999999765 67888888888887776 4566767765 5
Q ss_pred CCHHHHHHHHcc-----------------CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC---------
Q 009320 304 GFVPLLIDVLKS-----------------GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--------- 357 (537)
Q Consensus 304 g~v~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--------- 357 (537)
+++..|+..|.. ...+....+..+|+|++........-.....++.|+.+|..-
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 778777776632 023456678899999976543322211233444555544321
Q ss_pred CHHHHHHHHHHHHHhhcCh-hh-------HHH----HHhcCcHHHHHHHhcC----C---chHHH---HHHHHHHHhcCh
Q 009320 358 SERTRHDSALALYHLTLIQ-SN-------RVK----LVKLNAVATLLTMVKS----G---ESTSR---VLLILCNLAASN 415 (537)
Q Consensus 358 ~~~~~~~A~~aL~nLs~~~-~n-------~~~----iv~~g~v~~Lv~lL~~----~---~~~~~---al~~L~nLa~~~ 415 (537)
.......+..+|.|+-... .. ... -....++..|+++|.. . ...+. .+.+|.+++...
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 2346677788888863210 00 101 1123477778877741 1 12222 678888888764
Q ss_pred -hhHHHHHh----------------CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh
Q 009320 416 -EGRSAILD----------------ANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL 460 (537)
Q Consensus 416 -~~r~~i~~----------------~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~ 460 (537)
..|..+.. ...-..|++++.+ ....++..+...|+.||..+.
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~---~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS---PDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC---CCchHHHHHHHHHHHHHhhhH
Confidence 45655532 2235788999987 348999999999999997653
No 108
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.014 Score=61.82 Aligned_cols=267 Identities=16% Similarity=0.112 Sum_probs=167.7
Q ss_pred HHHHHHh----cCCCHHHHHHHHHHHHHhhccChHHHHHh-hcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 009320 224 EELSKKL----RSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV 298 (537)
Q Consensus 224 ~~Lv~~L----~s~~~~~~~~A~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~ 298 (537)
+.++..| ...++..+.--+.-|.-|-. .+ .+.++ .-....+.|+.+|.+++.+++.-+-.+|.++-..-.++.
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 4444444 33566666655655555531 11 22222 235568889999999999998766666655543222222
Q ss_pred HHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHH-HHHHHHH---HHHHhh
Q 009320 299 LIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESER-TRHDSAL---ALYHLT 373 (537)
Q Consensus 299 ~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~-~~~~A~~---aL~nLs 373 (537)
..++ ...++.++.-+.+++++++..|..-|..+...........-+|++..++.++.+..+. ++..+.. .|..+.
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 2222 3557788888999999999999888888766655444444578888888888876543 3333322 234444
Q ss_pred cChhhHHHHHhcC-cHHHHHHHhcCCchHHH--HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 374 LIQSNRVKLVKLN-AVATLLTMVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 374 ~~~~n~~~iv~~g-~v~~Lv~lL~~~~~~~~--al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
+....... ++.| .+..|.+.+.+.....+ ++..+..|-....|.-..........|++-|.+ .++.+...++.
T Consensus 324 s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~ 399 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD---RSDEVVLLALS 399 (675)
T ss_pred hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC---chhHHHHHHHH
Confidence 44333333 4433 67777777776654333 777877776655555555556667888888887 79999999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.|.++|..+... .. -..+..|+++-.....-.+..+.-+++.|+..
T Consensus 400 lla~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 400 LLASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 999999854321 11 12334555555555556677777777776653
No 109
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0088 Score=63.39 Aligned_cols=276 Identities=15% Similarity=0.098 Sum_probs=180.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHH-HhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRV-SICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+-...-.|..++......+++.|-.+-++-...+. .+.-.+.||+|-.-+...++..+...+.-|..|-..+.-.-.=.
T Consensus 126 iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~y 205 (675)
T KOG0212|consen 126 IFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISY 205 (675)
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhc
Confidence 33444445444444445566666666554333333 33445678888877777888888888887777755443221111
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh-cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV-LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
-...++-|+.+|...+.++|..+-.+|.++-..-.++....+ ...++.++.-+.+..+.++..|+.-|..+..-..+..
T Consensus 206 l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 206 LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch
Confidence 245678889999999999987666655554322222222222 3567888888888899999999888888776655555
Q ss_pred HHHhcCcHHHHHHHhcCCch---HHH---HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 381 KLVKLNAVATLLTMVKSGES---TSR---VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~~---~~~---al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
...-.|++..++.++.+.+. .+. .-..|..+++.+.....+.-...+..|.+.+.. +..+.+-.++..+..
T Consensus 286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~---~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD---DREETRIAVLNWIIL 362 (675)
T ss_pred hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc---chHHHHHHHHHHHHH
Confidence 55556777777777765442 111 222355566666555443323447888888887 778888888888887
Q ss_pred hhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 455 LGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 455 L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
|-...+ .+-.......+..|+.-+.+.+..+-..+..+|..++....
T Consensus 363 l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 363 LYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 766433 23344456678889998999999999999999999887743
No 110
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.25 E-value=0.0012 Score=53.57 Aligned_cols=85 Identities=29% Similarity=0.331 Sum_probs=68.2
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh
Q 009320 265 LSALRNLV-VSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343 (537)
Q Consensus 265 i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~ 343 (537)
|+.|++.| .++++.++..++.+|..+-. ...++.|+.++.++++.+|..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67889988 78899999999999984421 13489999999999999999999999877 34
Q ss_pred cCchHHHHHHhccC-CHHHHHHHHHHH
Q 009320 344 LGALQPLMHALRAE-SERTRHDSALAL 369 (537)
Q Consensus 344 ~g~l~~Lv~lL~~~-~~~~~~~A~~aL 369 (537)
..+++.|.+++.+. +..++..|+.+|
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 55889999999876 455678888776
No 111
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00023 Score=69.35 Aligned_cols=48 Identities=13% Similarity=-0.051 Sum_probs=42.4
Q ss_pred cccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
-.|+||..-|.-||.++|+|.||--||+--...+...|++|+.+++++
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 369999999999999999999999999875555566899999999874
No 112
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.15 E-value=0.017 Score=57.26 Aligned_cols=225 Identities=12% Similarity=0.136 Sum_probs=156.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHH-HhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHcccCcchhhHHhh-cCchH
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLI-VRSGFVPLLIDVLKS--GSEESQEHAAGALFSLALEDENKMAIGV-LGALQ 348 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i-~~~g~v~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~-~g~l~ 348 (537)
+.=++-.+--|+.+|.++....+.|..+ ++...-..++.+++. |..+++-+..-+++.|+.+......|-+ ...+.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3334446677888999999877666554 355556778888875 4578899999999999999887766654 46788
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHhhcC--hhhHHHHHhcCcHHHHHHHhcCCch-----H---HHHHHHH----HHHhc
Q 009320 349 PLMHALRAE-SERTRHDSALALYHLTLI--QSNRVKLVKLNAVATLLTMVKSGES-----T---SRVLLIL----CNLAA 413 (537)
Q Consensus 349 ~Lv~lL~~~-~~~~~~~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~~~~~-----~---~~al~~L----~nLa~ 413 (537)
.|+.+++.. .+.+.+-++..+.|++.- ......+.-.|-+.+-++.|.++.. . +..-..| ..||.
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 888888875 456778888899998862 2455666777777777887764321 1 1111111 11221
Q ss_pred Ch------------------------hhHHHHHhCC--cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 009320 414 SN------------------------EGRSAILDAN--GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAK 467 (537)
Q Consensus 414 ~~------------------------~~r~~i~~~g--~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~ 467 (537)
.+ ++.+.+.+.+ .+..|.+++... ........|+.-+..+.+..++...++.
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n--~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN--NPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC--CCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11 2233333333 368888888872 2223456677788888887777788888
Q ss_pred HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 468 EARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 468 ~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.-|+-+.+++++.+.++++|-.|..+++.+-.
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 89999999999999999999999999987654
No 113
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.14 E-value=0.0024 Score=61.87 Aligned_cols=184 Identities=15% Similarity=0.072 Sum_probs=111.5
Q ss_pred ccCCHHHHHHHHHHHHHcccCc---chhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcH
Q 009320 314 KSGSEESQEHAAGALFSLALED---ENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAV 388 (537)
Q Consensus 314 ~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v 388 (537)
.+.+.+.|..|..-|..+.... +....+.. ...+..+...+.+....+.+.|+.++..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888888888888876554 23333322 245566777777666778889999988888654444333345688
Q ss_pred HHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh----HH
Q 009320 389 ATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL----RF 462 (537)
Q Consensus 389 ~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~----~~ 462 (537)
+.|++.+.+.. +.+.|..+|..++..-..-..+. +..+...+.+ .++.++..++..|..+..... ..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~---Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKS---KNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT----S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhC---CCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 99999998765 45667888888776543111110 3455555655 789999999999998876322 12
Q ss_pred HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 463 KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 463 ~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
.....-..+++.+..++.+.++.+|+.|..+++.+....++.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 111111346778888899999999999999999998876654
No 114
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.13 E-value=0.00016 Score=65.86 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=39.5
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
-|.|-||.+-|+.||++.|||.||-.|-.+-++.+ ..|-+|++...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhc
Confidence 49999999999999999999999999988877764 46888887544
No 115
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.09 E-value=0.0028 Score=61.43 Aligned_cols=178 Identities=20% Similarity=0.176 Sum_probs=104.4
Q ss_pred cCCCHHHHHHHHHHHHHhhccC--hHHHHHhhc--CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCC
Q 009320 231 RSADIALQEEGVIALRRLTRTN--EELRVSICT--PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK-NKVLIVRSGF 305 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~--~~~r~~i~~--~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~-~k~~i~~~g~ 305 (537)
.+.+++.+..|+..|+.+.+.+ ......+.+ ..++..+...+.+....+...|+.+|..++..-. .-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 6789999999999999998766 222222211 1445666666666677788999999998886322 22222 2356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHh
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVK 384 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~ 384 (537)
++.|++.+.++...+++.|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+.. .+.+...+-.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 899999999998999999999998887654411111 14455666777799999999988888654 3311111111
Q ss_pred ----cCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 385 ----LNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 385 ----~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
..+++.+...+.|.+ +++.|-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 457777788887765 45556666666643
No 116
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.08 E-value=0.0023 Score=51.79 Aligned_cols=85 Identities=28% Similarity=0.352 Sum_probs=68.1
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.|++.| ++.++.++..|++.|..+-. ..+++.|+.++.++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 35788989 88999999999998885431 135999999999999999999999999873
Q ss_pred hcCCHHHHHHHHccCC-HHHHHHHHHHH
Q 009320 302 RSGFVPLLIDVLKSGS-EESQEHAAGAL 328 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~-~e~~~~Aa~~L 328 (537)
....++.|.+++.+.+ ..+|..|+.+|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2347889999998754 55688888877
No 117
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.07 E-value=0.031 Score=57.54 Aligned_cols=163 Identities=28% Similarity=0.338 Sum_probs=110.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
-.++.+..++.+.+..++..+...|..+. ..-.++.|..+|.+.+..+|..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 45788888888888888888877743332 234578999999999999999999877544 2
Q ss_pred hcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHH-HHh--c--Chh
Q 009320 343 VLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILC-NLA--A--SNE 416 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~-nLa--~--~~~ 416 (537)
....++.|+.++.. .+..++..++.+|..+- +..++.+|+..+.+..... +...+. .+. . ...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS-AAAALDAALLDVRAAAAE 171 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh-hhhhccchHHHHHHHHHH
Confidence 34578899999994 78889999999987763 3344888888887654222 111110 000 0 000
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
....+.+...++.+.+.+.. ....++..|..+|..+...+
T Consensus 172 ~l~~~~~~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 172 ALGELGDPEAIPLLIELLED---EDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHcCChhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch
Confidence 11112345568888888887 67788999998888887654
No 118
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.1 Score=57.68 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=43.3
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCCC
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG-REDD 503 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~-~~~e 503 (537)
..+++.|++ .+..++..|+..++.|...+ .++.+ +..|++++...++..|...+.-+..+++ +.|+
T Consensus 353 ~tIleCL~D---pD~SIkrralELs~~lvn~~-Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 353 STILECLKD---PDVSIKRRALELSYALVNES-NVRVM------VKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHhcC---CcHHHHHHHHHHHHHHhccc-cHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 456677776 67888888888888887644 23444 3357777777788877666655555554 3443
No 119
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00032 Score=77.02 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=41.8
Q ss_pred CCccccccccccccC-----CeecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD-----PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
..+-.|+||.|.|.. |=.++|||.|...|+.+|++. ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 447899999999999 789999999999999999998 45899999843
No 120
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.94 E-value=0.014 Score=60.59 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=135.6
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCCHHHH
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KNKVLIVRSGFVPLL 309 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~k~~i~~~g~v~~L 309 (537)
...++.+...+..|.++.+++++..+.+++.|+++.++-...-.++.+..+++.+|.|++.+. ..+..|++.-+-+=|
T Consensus 233 ~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWL 312 (832)
T KOG3678|consen 233 REPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWL 312 (832)
T ss_pred cCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhh
Confidence 345666777788899999999999999999999999888778888999999999999999853 678888887666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHH-HHHHHHHHHhhcChhhHHHHH--hcC
Q 009320 310 IDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTR-HDSALALYHLTLIQSNRVKLV--KLN 386 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~-~~A~~aL~nLs~~~~n~~~iv--~~g 386 (537)
+-+-.+.+.-+|-+||-+..-|+.+.+....+-+.|.+..+=.++.+.++... +++- .... .-.
T Consensus 313 F~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~h-------------d~aQG~~~d 379 (832)
T KOG3678|consen 313 FPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAH-------------DYAQGRGPD 379 (832)
T ss_pred hhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhh-------------hhhccCChH
Confidence 65555566778999999999999888777666666654322223333333211 1110 0001 112
Q ss_pred cHHHHHHHhcCCchHHHHHHHHHHHhc----ChhhHHH-HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009320 387 AVATLLTMVKSGESTSRVLLILCNLAA----SNEGRSA-ILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455 (537)
Q Consensus 387 ~v~~Lv~lL~~~~~~~~al~~L~nLa~----~~~~r~~-i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L 455 (537)
-++.|+.+|++.....+++++..-.+. ..+|+.. +-+-|+|+.|-++.++ .+......|-.+|.-|
T Consensus 380 ~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS---~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 380 DLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASS---PDEVAAKFASEALTVI 450 (832)
T ss_pred HHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHh
Confidence 456677777765555555555533221 1234433 4466888888888775 3444444444455443
No 121
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.1 Score=52.11 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=162.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC-CCcc----HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhh
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSL-EKKN----KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM 339 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~----k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~ 339 (537)
.|.|-.-|..++..+..-++..+..+.. .+.| ...++.++.++.++..+...+.++-..|...|..++..++.-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3344444456777888888887766554 3433 2234478899999999998899999999999999999888777
Q ss_pred HHhhcCchHHH--HHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcC-Cc--hHHHHHHHHHHHhc
Q 009320 340 AIGVLGALQPL--MHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKS-GE--STSRVLLILCNLAA 413 (537)
Q Consensus 340 ~I~~~g~l~~L--v~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~-~~--~~~~al~~L~nLa~ 413 (537)
.|..+..+..+ +.+.-..+.-++-..+..+..+.+ +++.....-..|.+..|..-|.. .+ +...++.....|+.
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 77765544332 333333345566666677777654 56677777788999988887764 22 45568888889999
Q ss_pred ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH---HHHHHHH--CCcHHHHHHHHHhCCHHHHH
Q 009320 414 SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR---FKGLAKE--ARAAEVLREVEERGSQRAKE 488 (537)
Q Consensus 414 ~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~---~~~~i~~--~g~i~~L~~ll~~~s~~~k~ 488 (537)
...+|+.+.+.|.|..+..++... ..++..+-.++.....+-..... .-+.+.+ .-++....+++...++.+.+
T Consensus 244 teHgreflaQeglIdlicnIIsGa-dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGA-DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCC-CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 999999999999999999999873 34555565565555544332110 0011111 12345566778888999999
Q ss_pred HHHHHHHHhhcCC
Q 009320 489 KAKRILEMLKGRE 501 (537)
Q Consensus 489 ~A~~lL~~L~~~~ 501 (537)
.|...|-.|.+..
T Consensus 323 aAiDalGilGSnt 335 (524)
T KOG4413|consen 323 AAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHhccCCc
Confidence 9999998887764
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00052 Score=64.80 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCeecCCCccccHHHHHHHHH
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE 60 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~ 60 (537)
+-+.=+|.+|++.++|||+.+.||-|||.||.+++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 334447899999999999999999999999988763
No 123
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.88 E-value=0.00034 Score=70.91 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=29.5
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQV 57 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~ 57 (537)
.+++.||||...|+||++++|||+.||.|-..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARN 33 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHh
Confidence 47899999999999999999999999999653
No 124
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.88 E-value=0.0023 Score=43.71 Aligned_cols=40 Identities=38% Similarity=0.460 Sum_probs=36.3
Q ss_pred CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 294 KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 294 ~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
++++..+.+.|+++.|+.+|.+++.+++..++++|.+|+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578889999999999999999999999999999999863
No 125
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.85 E-value=0.091 Score=55.53 Aligned_cols=178 Identities=17% Similarity=0.046 Sum_probs=119.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
...|+..|++.++.++..++..+...- ....+.|..+|++.++.++..|+.+|..+-.
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---------- 176 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR---------- 176 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence 467888888888888877765544421 2246788899999999999999999988763
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
...++.|...+.+.++++|..|+..|..+ +...++..+..+...........+..++ .+..
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~l----------G~~~A~~~l~~~~~~~g~~~~~~l~~~l-al~~-------- 237 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLA----------GSRLAWGVCRRFQVLEGGPHRQRLLVLL-AVAG-------- 237 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHhccCccHHHHHHHHH-HhCC--------
Confidence 23456677889999999999999999554 2234455566644333322222222222 2221
Q ss_pred HhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 383 VKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
...+++.|..++++...+..++.+|..+ .+...++.|++.+.. +..+..|-.++..|.-
T Consensus 238 -~~~a~~~L~~ll~d~~vr~~a~~AlG~l----------g~p~av~~L~~~l~d-----~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 -GPDAQAWLRELLQAAATRREALRAVGLV----------GDVEAAPWCLEAMRE-----PPWARLAGEAFSLITG 296 (410)
T ss_pred -chhHHHHHHHHhcChhhHHHHHHHHHHc----------CCcchHHHHHHHhcC-----cHHHHHHHHHHHHhhC
Confidence 1257888888888877666677766543 345678888888854 3477788888877765
No 126
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.79 E-value=0.0011 Score=52.98 Aligned_cols=45 Identities=16% Similarity=-0.017 Sum_probs=32.7
Q ss_pred cccccccccC-Cee-cCCCccccHHHHHHHHHcC--CCCCCCCCCCCCC
Q 009320 31 CPVSGSLMFD-PVV-VSTGQTFDRVSVQVCRELG--FLPDLENGFKPDF 75 (537)
Q Consensus 31 CpI~~~~m~d-PV~-~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~ 75 (537)
||.|..-=.| |++ =.|||.|-..||.+|++.+ +..||.||++...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4444433334 544 4899999999999999864 4589999998654
No 127
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.17 Score=50.69 Aligned_cols=239 Identities=13% Similarity=0.152 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS 315 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~ 315 (537)
.+...+..|-.+..-++..-......|++..|..=+.. .+.-+..+++.....|+..++.+..+.+.|.++.+..++..
T Consensus 187 aRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 187 ARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 34445555556655556666666678999888876665 56667788888888999988999999999999999998864
Q ss_pred CC--HHHHH----HHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcC-
Q 009320 316 GS--EESQE----HAAGALFSLALEDENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLN- 386 (537)
Q Consensus 316 ~~--~e~~~----~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g- 386 (537)
.+ +-.+- -....+.+++..+-.-.++.+ .-++...++++...++.....|..++..|-++.+....+.+.|
T Consensus 267 adsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp 346 (524)
T KOG4413|consen 267 ADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP 346 (524)
T ss_pred CCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC
Confidence 33 22222 222344444433323334443 2356666788888899999999999999999888888888766
Q ss_pred -cHHHHHHHhcC---CchHHHHHHHHHHHhcC--------hhhHHHH------Hh-------CCcHHHHHHHHhccCCCC
Q 009320 387 -AVATLLTMVKS---GESTSRVLLILCNLAAS--------NEGRSAI------LD-------ANGVSILVGMLRESGSDS 441 (537)
Q Consensus 387 -~v~~Lv~lL~~---~~~~~~al~~L~nLa~~--------~~~r~~i------~~-------~g~I~~Lv~lL~~~~~~~ 441 (537)
....|+.-..+ ...++.++.+|.+++.. .+|++.. .+ -.-......+++. ..
T Consensus 347 paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQ---pf 423 (524)
T KOG4413|consen 347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQ---PF 423 (524)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcC---CC
Confidence 34444433332 22456677888888752 1333321 11 1224455566655 57
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHH
Q 009320 442 EATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV 478 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 478 (537)
++++..++.++..++..+...+.+...++.+.....-
T Consensus 424 pEihcAalktfTAiaaqPWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 424 PEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred hhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeeccc
Confidence 8999999999999999887777777777877766654
No 128
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.001 Score=67.37 Aligned_cols=47 Identities=4% Similarity=-0.186 Sum_probs=40.8
Q ss_pred cccccccccccCC---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDP---VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+.|-||+|-|++= ++|||+|.|=..||..|+.+.+..||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 7999999999863 4789999999999999999877789999985543
No 129
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.72 E-value=0.25 Score=56.21 Aligned_cols=241 Identities=17% Similarity=0.123 Sum_probs=147.1
Q ss_pred HhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc----cCC----HHHHHHH
Q 009320 258 SICTPNLLSALRNLVVS-----RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK----SGS----EESQEHA 324 (537)
Q Consensus 258 ~i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~----~~~----~e~~~~A 324 (537)
.+.+.|++..|+.++.+ .........+.+|...++...|+..+++.|+++.|++.|. .+. .++-+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45678999999999864 3446667777888888888999999999999999998774 333 4555555
Q ss_pred HHHHHHcccCcc---hhhHHh----------hcCchHHHHHHhccC----CHHHHHHHHHHHHHhhcChhhHHHHHhcCc
Q 009320 325 AGALFSLALEDE---NKMAIG----------VLGALQPLMHALRAE----SERTRHDSALALYHLTLIQSNRVKLVKLNA 387 (537)
Q Consensus 325 a~~L~~Ls~~~~---~k~~I~----------~~g~l~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~ 387 (537)
..++..|..... ...... ...-+..|++.+.+. ++.+....+.+|-+|+.........+-.-.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 555555432211 111000 112355666666654 567777778888888876554433321111
Q ss_pred HHHHHHHhc-C-C-c-hHHHHHHHHHHHhc----Ch---hhHHHHHhCCcHHHHHHHHhccCC-----CCHHH-------
Q 009320 388 VATLLTMVK-S-G-E-STSRVLLILCNLAA----SN---EGRSAILDANGVSILVGMLRESGS-----DSEAT------- 444 (537)
Q Consensus 388 v~~Lv~lL~-~-~-~-~~~~al~~L~nLa~----~~---~~r~~i~~~g~I~~Lv~lL~~~~~-----~~~~~------- 444 (537)
-+ .+++=. + . . ....-+..++.++. +. .-|+.+++.|.+..+++.|..... ++++-
T Consensus 272 ~p-~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KP-YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HH-hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 11 112111 1 1 1 11123444444433 22 347788999999989888765322 23333
Q ss_pred -HHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhcC
Q 009320 445 -RENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 445 -~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~~ 500 (537)
...++.+|..||.+....+.+ ...++++.|-.|-+ .++..+-.-|..+|..|+..
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 346889999999977655555 45677776666633 33566777788888777774
No 130
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.71 E-value=0.0038 Score=42.59 Aligned_cols=39 Identities=31% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 254 ELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 254 ~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
+++..+.+.|+++.|+.++.+++++++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477888999999999999999999999999999999873
No 131
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.43 Score=54.43 Aligned_cols=138 Identities=16% Similarity=0.139 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhhccChHHHHHhh----cCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHH
Q 009320 236 ALQEEGVIALRRLTRTNEELRVSIC----TPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLI 310 (537)
Q Consensus 236 ~~~~~A~~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv 310 (537)
+..+.++..|+|+-+.+++.-..+. --|..+.++..+.+ +++.++.-|+.++..+..+.+....|++.|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 3456688999999888875544432 24667777777754 678899999999999988888999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhc
Q 009320 311 DVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-ESERTRHDSALALYHLTL 374 (537)
Q Consensus 311 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~ 374 (537)
.+|.+ -+..|+.+..+|+.|+.+.+.-..-.+.|++.-+.+++-. .+++.+..|+..|..|..
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 99974 5778999999999999998866666677888777777644 467888888888888764
No 132
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.15 Score=54.97 Aligned_cols=221 Identities=15% Similarity=0.177 Sum_probs=143.6
Q ss_pred hcCChHHHHHHHHc---cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 260 CTPNLLSALRNLVV---SRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 260 ~~~g~i~~Lv~lL~---s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
.+...++.+-.+|. +....++..|..+...+-. .+...... .++.++.-+.......+..++.+|..|+...
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 46677777776664 4456777766665544332 12111111 2445554444346778889999999888877
Q ss_pred chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-hHHHHHHHHHHHhcC
Q 009320 336 ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-STSRVLLILCNLAAS 414 (537)
Q Consensus 336 ~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-~~~~al~~L~nLa~~ 414 (537)
.......-..++|.|.+.|.+..+++++.+..+|..+++.-+|.. | .-.+|.|++.+.++. ....++..|..
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp~~~~~e~~~~L~~---- 358 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I--QKIIPTLLDALADPSCYTPECLDSLGA---- 358 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCcccchHHHHHhhcc----
Confidence 777777778999999999999999999999999999988766654 1 136788888888776 44555555422
Q ss_pred hhhHHHH---HhCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCC--hH-HHHHHHHCCcHHHHHHHHHhCCHHHH
Q 009320 415 NEGRSAI---LDANGVSILVGMLRES-GSDSEATRENCVAALFALGHGN--LR-FKGLAKEARAAEVLREVEERGSQRAK 487 (537)
Q Consensus 415 ~~~r~~i---~~~g~I~~Lv~lL~~~-~~~~~~~~e~A~~~L~~L~~~~--~~-~~~~i~~~g~i~~L~~ll~~~s~~~k 487 (537)
..+ ++.-.+..++.+|+.. ...+...+..++.+.+|+|.-- +. ....+ ...++-|-..+.+..|++|
T Consensus 359 ----ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 359 ----TTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred ----eeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHH
Confidence 222 2234455555555441 1146677889999999999832 22 11121 2345555555666689999
Q ss_pred HHHHHHHHHh
Q 009320 488 EKAKRILEML 497 (537)
Q Consensus 488 ~~A~~lL~~L 497 (537)
.-+...|..+
T Consensus 433 ~vaarAL~~l 442 (569)
T KOG1242|consen 433 AVAARALGAL 442 (569)
T ss_pred HHHHHHHHHH
Confidence 9999888333
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.52 E-value=0.0014 Score=66.83 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=44.7
Q ss_pred cccccccccccCCeecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 29 FLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
+.|.|++++-++||+-+ +||.|||+-|++++.+. ..||+++++++..+++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeee
Confidence 57999999999999875 69999999999999884 47999999998777766
No 134
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.50 E-value=0.083 Score=47.88 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=91.2
Q ss_pred HHhhcCchHHHHHHhccCC------HHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc----CCchHHHHHHHHH
Q 009320 340 AIGVLGALQPLMHALRAES------ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK----SGESTSRVLLILC 409 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~~~------~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~----~~~~~~~al~~L~ 409 (537)
.....+++..|++++.++. ......++.++..|-.++-.--..++...|...+.++. +......++.+|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 3456789999999999886 35677788888888776554555666778888888875 2346778999999
Q ss_pred HHhcChhhHHHHHhCCc-HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 410 NLAASNEGRSAILDANG-VSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 410 nLa~~~~~r~~i~~~g~-I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
+++..+......+..+. ++.|+.+|.. .+++++.+|++.+-+|....
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~---~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQV---SNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHc---CCHHHHHHHHHHHHHHHhcC
Confidence 99998766555554444 8999999998 89999999999999988743
No 135
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.46 E-value=0.0024 Score=63.41 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=42.8
Q ss_pred CCCccccccccccccC--C-e-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 25 PPKEFLCPVSGSLMFD--P-V-VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~d--P-V-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
-...|.||||+..|.. + | +-+|||.|...+|.+-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 4668999999999954 2 2 34999999999998873 2446999999999877654
No 136
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.45 E-value=0.21 Score=53.40 Aligned_cols=255 Identities=18% Similarity=0.170 Sum_probs=126.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH-------
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV------- 298 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~------- 298 (537)
|-..|++.-..++.++++.+..++..+- -.... ...|..|-.+|.+.....+-.|+++|..|+.....+.
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev 345 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV 345 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH
Confidence 3344555667888899999888875440 00111 2246777788888999999999999999997433222
Q ss_pred -HHH-hcC---CHHHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 299 -LIV-RSG---FVPLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 299 -~i~-~~g---~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
.++ +.+ ..-++..+|+.|+.+....-+..+-++..+ +..|..+. .++..|.-++ |+-+..-+..|.+
T Consensus 346 EsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i--da~rsLsl~F----p~k~~s~l~FL~~ 419 (898)
T COG5240 346 ESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI--DALRSLSLLF----PSKKLSYLDFLGS 419 (898)
T ss_pred HHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH--HHHHHHHhhC----cHHHHHHHHHHHH
Confidence 222 111 123445566666555433333333333211 11221111 1111111111 1111111222221
Q ss_pred -hhcCh--hhHHHHHhcCcHHHHHHHhc-CCchHHHHHHHHHHHhcChhhHHH---H----HhCC--------cHHHHHH
Q 009320 372 -LTLIQ--SNRVKLVKLNAVATLLTMVK-SGESTSRVLLILCNLAASNEGRSA---I----LDAN--------GVSILVG 432 (537)
Q Consensus 372 -Ls~~~--~n~~~iv~~g~v~~Lv~lL~-~~~~~~~al~~L~nLa~~~~~r~~---i----~~~g--------~I~~Lv~ 432 (537)
|+... +-+.. +|..+.+++. .++..++|+..|+..-.+-+..+. | .++| -|..+..
T Consensus 420 ~L~~eGg~eFK~~-----~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyN 494 (898)
T COG5240 420 SLLQEGGLEFKKY-----MVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYN 494 (898)
T ss_pred HHHhcccchHHHH-----HHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHH
Confidence 11111 11111 2334444443 345666666666655332222111 1 1111 1333333
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 433 MLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 433 lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
-+.- .+.-++..|+.+|...+..-.. ......+...|-..+.+.+++++..|..+|+++...
T Consensus 495 R~iL---EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 495 RLIL---ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHH---hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 2211 4556788888888776653211 011122334566678899999999999999999854
No 137
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.45 E-value=0.0018 Score=67.45 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=45.7
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc----CCCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL----GFLPDLENGFKPDFS 76 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~~ 76 (537)
.+.+--.+..|-+|.+.-.||+...|.|+|||.||..+... .+-+||+|-..++-.
T Consensus 529 ~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 529 LPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34555667899999999999999999999999999886532 345899998877653
No 138
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.42 E-value=0.56 Score=48.17 Aligned_cols=182 Identities=27% Similarity=0.333 Sum_probs=120.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.+++.|.+.+...+..|+..+..+.. ..+++.|..++.+.++.++..|+.+|..+-.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 35678888888888888888877655542 2358999999999999999999886665542
Q ss_pred hcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHH------------HHHHHHH
Q 009320 302 RSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERT------------RHDSALA 368 (537)
Q Consensus 302 ~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~------------~~~A~~a 368 (537)
...++.|+..|. +.+..+|..++.+|..+- ...++..|+.++.+..... +..++.+
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 234678888888 588899999999997763 2334778888887765322 2222222
Q ss_pred HHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHH
Q 009320 369 LYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRE 446 (537)
Q Consensus 369 L~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e 446 (537)
| ..+.....++.+.+.+.+.. ++..+...|..+.... ......+...+.. .+..++.
T Consensus 173 l----------~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~---~~~~vr~ 231 (335)
T COG1413 173 L----------GELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD---ESLEVRK 231 (335)
T ss_pred H----------HHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC---CCHHHHH
Confidence 2 22233457788888887654 5555677776655443 2334555555555 5666665
Q ss_pred HHHHHHHHh
Q 009320 447 NCVAALFAL 455 (537)
Q Consensus 447 ~A~~~L~~L 455 (537)
.++..|..+
T Consensus 232 ~~~~~l~~~ 240 (335)
T COG1413 232 AALLALGEI 240 (335)
T ss_pred HHHHHhccc
Confidence 555555544
No 139
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.13 Score=58.38 Aligned_cols=214 Identities=15% Similarity=0.092 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCC----CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH-cccCcchhhHHhhcCchHHHHHHhcc
Q 009320 282 NAVASLVNLSLE----KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS-LALEDENKMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 282 ~a~~~L~nLs~~----~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~~~k~~I~~~g~l~~Lv~lL~~ 356 (537)
+=+++|.-|+.. +-....-...|+.|-++++|++...|+|..-+-+=.. |+.++..+..+.+.++-.-.+..|..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 334455555542 2223333457999999999999988887755444433 66777788888877666666777766
Q ss_pred C---CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHh-cChhhHHHHHhCCcHH
Q 009320 357 E---SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLA-ASNEGRSAILDANGVS 428 (537)
Q Consensus 357 ~---~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa-~~~~~r~~i~~~g~I~ 428 (537)
+ +++-+..|+-+|..++.+ .-.+....+.+.+...++.|.++. ...-++-+|..|= ..+++|=.-.+.++..
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 3 456667777788887764 456666778899999999998753 2222555555553 3445555556788899
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCC----hHHHHH-----------HHHCCcHH----HHHHHHHhCCHHHHHH
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGN----LRFKGL-----------AKEARAAE----VLREVEERGSQRAKEK 489 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~----~~~~~~-----------i~~~g~i~----~L~~ll~~~s~~~k~~ 489 (537)
.|..+|.+ ..++++..|+-+|..+.... ++.... ..-+..+. .|+.+++++++-++..
T Consensus 646 kL~~~LsD---~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 646 KLILLLSD---PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHhcC---ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 99999988 78999999999999988731 111111 11122233 5666788899988877
Q ss_pred HHHHHHHhh
Q 009320 490 AKRILEMLK 498 (537)
Q Consensus 490 A~~lL~~L~ 498 (537)
.+..|..+.
T Consensus 723 v~v~ls~~~ 731 (1387)
T KOG1517|consen 723 VVVALSHFV 731 (1387)
T ss_pred HHHHHHHHH
Confidence 776665443
No 140
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0049 Score=59.50 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=39.9
Q ss_pred CCccccccccccccCCeecC-CCccccHHHHHHHH-HcCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCR-ELGFLPDLENGFKPD 74 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~-~~~~~~cp~~~~~~~ 74 (537)
-.+-.||+|++-=.-|-++. |||.||--||..-+ -+...+||.|+....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34678999999999998775 99999999998733 244568999998765
No 141
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.0033 Score=59.57 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=45.9
Q ss_pred CccccccccccccCCee----cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 27 KEFLCPVSGSLMFDPVV----VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~----~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
..|.||+|.+.+.+-+- -+|||.|+..|.++.+... ..||+|+.++.++++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEe
Confidence 67999999999988653 4999999999999988763 47999999999988876
No 142
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.24 Score=53.49 Aligned_cols=235 Identities=15% Similarity=0.099 Sum_probs=138.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG 304 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g 304 (537)
.++....+....++..|....+.+.+.-+... -.-++|.++.-+..........++..|..++....-........
T Consensus 220 ~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~ 295 (569)
T KOG1242|consen 220 SILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPD 295 (569)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhH
Confidence 34444445566777777776666543111110 01123333332233355667888889998888766666666788
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009320 305 FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVK 384 (537)
Q Consensus 305 ~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 384 (537)
.+|.|.+.|.+..+++|..+..+|..++..-+|... .-.+|.|++.+.+.+. ....++..|..-.... -|+
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttFV~-----~V~ 366 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSC-YTPECLDSLGATTFVA-----EVD 366 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCccc-chHHHHHhhcceeeee-----eec
Confidence 999999999999999999999999999877766652 2357788888876542 2233333333221111 122
Q ss_pred cCcHHHHHHHh----cC--CchHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 385 LNAVATLLTMV----KS--GESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 385 ~g~v~~Lv~lL----~~--~~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
+-.+..++.+| .+ .....+++.++.|+|..-+....+.. ...++.|-..+.. -.+++|+.+..+|..+-
T Consensus 367 ~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d---~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 367 APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD---AVPEVRAVAARALGALL 443 (569)
T ss_pred chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC---CChhHHHHHHHHHHHHH
Confidence 33334444444 32 33566699999999986644444331 1223444444444 36899999999998776
Q ss_pred cCChHHHHHHHHCCcHHHHHHHH
Q 009320 457 HGNLRFKGLAKEARAAEVLREVE 479 (537)
Q Consensus 457 ~~~~~~~~~i~~~g~i~~L~~ll 479 (537)
.+-.... ..+.++.|.+..
T Consensus 444 e~~g~~~----f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 444 ERLGEVS----FDDLIPELSETL 462 (569)
T ss_pred HHHHhhc----ccccccHHHHhh
Confidence 5321111 144555555554
No 143
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.054 Score=59.71 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK 294 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~ 294 (537)
..|.+.|+++++.++..|+-.+..+-..+ .......|.++.|-.++.+.++.|..+|+++|..+...+
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 57888999999999999998888887544 446678999999999999999999999999999987643
No 144
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.029 Score=59.31 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=124.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK--NKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~--~k~~i 300 (537)
++.|+..|+..+....--+...+.++.-.-...+..+.+.|.|..|+.++.+.+..+|.+..+.|..+-.+.+ .+-++
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~ 512 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKF 512 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhh
Confidence 3566666665444444445556666665556677888899999999999999999999999999999988543 35555
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc----chhhHHhh---c-CchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED----ENKMAIGV---L-GALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~----~~k~~I~~---~-g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
...-++..++.+...+...+++.+..+|+|++.+. ..+....+ . -.+..|++.++..+|-.....+-.|.++
T Consensus 513 Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~ 592 (743)
T COG5369 513 LAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRN 592 (743)
T ss_pred HHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Confidence 66677889999999888899999999999998632 23443332 1 2567788888888887777778888887
Q ss_pred hcChhhHHHHHh--cCcHHHHHHHh
Q 009320 373 TLIQSNRVKLVK--LNAVATLLTMV 395 (537)
Q Consensus 373 s~~~~n~~~iv~--~g~v~~Lv~lL 395 (537)
+..+++...+|. ...+..+-++|
T Consensus 593 aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 593 AACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HhccchHHHHHHhHHHHHHHHHHHH
Confidence 777666655553 44555555444
No 145
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.081 Score=57.34 Aligned_cols=249 Identities=19% Similarity=0.160 Sum_probs=148.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-C------Ccc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-E------KKN 296 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~------~~~ 296 (537)
+.|+....+.+..++..|++.|..|.....-.+. .....++++.+++..++..|+.++.-.+. . +.+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 3466666788889999999988888742211111 25567788888899999999886654432 1 122
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH-h--h
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH-L--T 373 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n-L--s 373 (537)
...+.+ .+...+.+.++..+..+|..|+.+|..+-...+ .|..+-.=..++.-++. .+........++. . +
T Consensus 275 e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR--kr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 275 EEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR--KRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh--hhhcccchHHHHhcCCcc
Confidence 333333 456788888998899999999999977643221 11111111111121111 1122222223332 2 1
Q ss_pred c------------ChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccC
Q 009320 374 L------------IQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESG 438 (537)
Q Consensus 374 ~------------~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~ 438 (537)
+ .++.-..++..|+-..++.-|.+. +++..|+..++.|+.. +.... .++..|++++.+
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfND-- 421 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFND-- 421 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhcc--
Confidence 1 012234567778888888877664 3566688888888763 33322 345789999988
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 439 SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 439 ~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+...++..|+.+|..++.+- ..++.-++.+++-+.+.+.++++....+|++.+
T Consensus 422 -E~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 422 -EIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred -HHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 78899999999999998752 122233445555556666666665555554433
No 146
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.00 E-value=0.039 Score=51.96 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhc----------------CCHHHHHHHHccC------CHHHHHHHHHHHHHccc
Q 009320 276 YSIVQTNAVASLVNLSLEKKNKVLIVRS----------------GFVPLLIDVLKSG------SEESQEHAAGALFSLAL 333 (537)
Q Consensus 276 ~~~v~~~a~~~L~nLs~~~~~k~~i~~~----------------g~v~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~ 333 (537)
.......++.+|.||+..++....+... ..+..|+..+..| ..+-..+.+.+|.|+|.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3345567788888998877776655431 2577888877662 24456788999999999
Q ss_pred CcchhhHHhh--cCc--hHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhc---CcHHHHHHHhc
Q 009320 334 EDENKMAIGV--LGA--LQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKL---NAVATLLTMVK 396 (537)
Q Consensus 334 ~~~~k~~I~~--~g~--l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---g~v~~Lv~lL~ 396 (537)
.++.|..+.. .+. +..|+..+...+..-+.-++.+|.|+|...+....+... +++|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999985 345 778888888777777788889999999999888888863 55666555443
No 147
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.96 E-value=0.05 Score=45.57 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 401 TSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 401 ~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
....+.+|.|||. ++..++.+.+.|+|+.++....- +..++..+|.|+.++.+||.+++..++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3457889999997 55889999999999999997665 3478999999999999999999888877764
No 148
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.96 E-value=0.016 Score=42.64 Aligned_cols=55 Identities=25% Similarity=0.162 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 318 EESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 318 ~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
+.+|..|+.+|.+++........-....+++.|+.+|.+.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999886665544445578899999999999899999999999765
No 149
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.90 E-value=0.0077 Score=57.86 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred CccccccccccccCCeec-CCCccccHHHHHHHHHcCC-CCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGF-LPDLENGFK 72 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~-~~cp~~~~~ 72 (537)
-++.|||+......||+- .|||.|+|..|...+.... ..||+-+..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 368999999999999974 8999999999999886633 369975544
No 150
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.80 E-value=0.22 Score=53.65 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=148.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChH--HHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEE--LRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
+-.++..|++..+.++.+|+.....|++--.. ....+...| ..|..-|....+++.-..+.++..+-.. .-.+.+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 45677888999999999999988887742110 011222222 2345556677888888777777766542 211111
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 378 (537)
---.|.+|.|.-+|++....+.++.+..+..++.+.....-.- ...+--.|+++|.+.+.+.+++|..++..++..-.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG- 762 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG- 762 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC-
Confidence 1124889999999999999999999999988887654322222 12344478899999999999999888766643211
Q ss_pred HHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh-CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 379 RVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILD-ANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-..++..|+.-|...+.+.+.+..+. ...+.+ .|-...|--+|..-.+....++. ++|.++|.
T Consensus 763 -----PqdvL~~LlnnLkvqeRq~Rvctsva--------I~iVae~cgpfsVlP~lm~dY~TPe~nVQn---GvLkam~f 826 (975)
T COG5181 763 -----PQDVLDILLNNLKVQERQQRVCTSVA--------ISIVAEYCGPFSVLPTLMSDYETPEANVQN---GVLKAMCF 826 (975)
T ss_pred -----HHHHHHHHHhcchHHHHHhhhhhhhh--------hhhhHhhcCchhhHHHHHhcccCchhHHHH---hHHHHHHH
Confidence 12344444444443333333332221 111222 23333444444442223344444 45555554
Q ss_pred CChH----HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 458 GNLR----FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 458 ~~~~----~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
--+. .+..+. -..|.|-.-+-+.++--++.|..+++.|.-+.+
T Consensus 827 mFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 827 MFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 2211 122221 122333344666777778888888888876654
No 151
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=2.5 Score=46.72 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=149.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
..++.+|.+..+.++.+|+-.+..+.-..+ ..|. .+|.|+.=|.++++.|+..|+.+++.|+. ++.|-..++
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA 220 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA 220 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc
Confidence 578889999999999999998887663333 3333 37899999999999999999999999998 677765553
Q ss_pred hcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHH-HHHHHHHHHH--HhhcChh
Q 009320 302 RSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESER-TRHDSALALY--HLTLIQS 377 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~-~~~~A~~aL~--nLs~~~~ 377 (537)
|.+.++|... +--+......+..+|+-... .++ ...+++|.+++.+.... ..-.+..++. +++....
T Consensus 221 -----P~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 221 -----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred -----HHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 6777877543 33344555667777765433 122 23678899998875432 2223333332 2333222
Q ss_pred hHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 378 NRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
+....+.. +|+.|-.++.+. +..-..+-++..+.. ++....+. -..+++.|.+ .++.++-.|+..|+.
T Consensus 292 d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~D---kD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 292 DHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDD---KDESIRLRALDLLYG 362 (877)
T ss_pred CcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhcc---CCchhHHHHHHHHHH
Confidence 33333322 455555555443 345556666666554 22222221 2577888887 788999999999999
Q ss_pred hhcCChHHHHHHHHCCcHHHHHHHHHh--CCHHHHHHHHHHHHHhhcC
Q 009320 455 LGHGNLRFKGLAKEARAAEVLREVEER--GSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 455 L~~~~~~~~~~i~~~g~i~~L~~ll~~--~s~~~k~~A~~lL~~L~~~ 500 (537)
+.... ...++ +..|+..+.. ++.---+-...++..++..
T Consensus 363 mVskk-Nl~eI------Vk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 363 MVSKK-NLMEI------VKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred Hhhhh-hHHHH------HHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 88632 12222 3355554222 2222234455566665544
No 152
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.72 E-value=0.019 Score=42.23 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHc
Q 009320 277 SIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSL 331 (537)
Q Consensus 277 ~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~L 331 (537)
+.++..|+.+|.+++........-.....++.|+.+|.+.+.++|..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999886554443334567899999999999999999999999764
No 153
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=0.63 Score=53.20 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCCHHHHHHHHcc-
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLV-NLSLEKKNKVLIVRSGFVPLLIDVLKS- 315 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~-nLs~~~~~k~~i~~~g~v~~Lv~lL~~- 315 (537)
+..|+..|..+-.-.+=.-.....-|+.|-++++|++...+++.--+-+=. -|+.++.....+++.++-.-.+.+|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 344555555555433333333456899999999999998888876666555 456677888888887777777777776
Q ss_pred C--CHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHH
Q 009320 316 G--SEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTL-IQSNRVKLVKLNAVAT 390 (537)
Q Consensus 316 ~--~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~ 390 (537)
+ ++|-|..||-+|..+..+-. .+....+.+.+..-++.|+++ .+-.+.-.+-+|..|-. .+++|-.-++.++...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 35788888889988887643 455555677777777888875 35556666667777654 5678888888999999
Q ss_pred HHHHhcCCc--hHHHHHHHHHHHhcC-----hhhHHHH---H--------hCCcHH----HHHHHHhccCCCCHHHHHHH
Q 009320 391 LLTMVKSGE--STSRVLLILCNLAAS-----NEGRSAI---L--------DANGVS----ILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 391 Lv~lL~~~~--~~~~al~~L~nLa~~-----~~~r~~i---~--------~~g~I~----~Lv~lL~~~~~~~~~~~e~A 448 (537)
|+.+|.+.- ++..|+.+|..+-.. ++....+ . -+..+. .++.+++. +++-++...
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd---gsplvr~ev 723 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD---GSPLVRTEV 723 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc---cchHHHHHH
Confidence 999998754 455566777766552 2322222 1 011222 45556655 677777777
Q ss_pred HHHHHHhhcCCh
Q 009320 449 VAALFALGHGNL 460 (537)
Q Consensus 449 ~~~L~~L~~~~~ 460 (537)
+.+|..+..+..
T Consensus 724 ~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 724 VVALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHHHhhH
Confidence 777777766543
No 154
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=1.3 Score=49.35 Aligned_cols=206 Identities=16% Similarity=0.162 Sum_probs=128.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
..|..+|.|.....+..|++.|-.+...+.+.. ...|.+++...+.+.+++.-..-.|..-+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 468899999888999999987776654444432 34788888888999999987777777766544443222
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh-HHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN-RVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~i 382 (537)
-|..+-+-|+.+++.+|..|.++|..+ |..+...=++-++-+...+.++.+++.|+.||-.|=+.+.+ +.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 256777889999999999998888665 33333322333444555666889999999999887654433 3322
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+ ..+=.+|.+.. +...|+.+...+|- +.-+.+ ++--..|+.+|-. -++..|-..+.+|..-|+
T Consensus 182 ~-----e~I~~LLaD~splVvgsAv~AF~evCP--erldLI--HknyrklC~ll~d---vdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLI--HKNYRKLCRLLPD---VDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHh--hHHHHHHHhhccc---hhhhhHHHHHHHHHHHHH
Confidence 2 23333455543 34445555544443 222222 2334566666655 455555555666555544
No 155
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.011 Score=59.21 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=40.0
Q ss_pred CCccccccccccccCC-------------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDP-------------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
-.+=.|-||.|=|-.| =-+||||.+--+|+..|.+++ .+||.||.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 3577899999885444 578999999999999999985 48999999853
No 156
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.0056 Score=60.56 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=45.9
Q ss_pred CCCCCCCccccccccccccCCeecCC-CccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVST-GQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~-G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+.-.|+.=.||+|+.--.+|-++.. |..||-.||-++... ++.||+|+.+..-
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 45667888999999999999988876 999999999999884 6689999887654
No 157
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.44 E-value=0.5 Score=53.44 Aligned_cols=266 Identities=17% Similarity=0.120 Sum_probs=140.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCc-cHHHHHh
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKK-NKVLIVR 302 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~-~k~~i~~ 302 (537)
.|+++..+.+-+.+-.|..-|..=-..+..+-..=.+..++..|+++|.+.+.+||..|+.+|.-|+. -.+ .-+.+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-- 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-- 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 57777777777777766664443221111111111356789999999999999999999999998874 222 22333
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHH-HcccCcchhhHHhhcCchHHHHHHhccC------CHHHHHHHHHHHHHhhc-
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALF-SLALEDENKMAIGVLGALQPLMHALRAE------SERTRHDSALALYHLTL- 374 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~------~~~~~~~A~~aL~nLs~- 374 (537)
++.|..-+-++....|..+.-.|. .++..+..........+++.+...|... ...++..++..|..+-+
T Consensus 87 ---ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 87 ---VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred ---HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 334444333344444443332222 2222222111111223344444444432 22345555554443221
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
...--.. ...+....++.-+.... ++.+++.+|..|+..- ++.... +.+..|++-|... .......--+.+|
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~--~li~~Ll~~L~~~--~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV--ELIEHLLKGLSNR--TQMSATRTYIQCL 237 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH--HHHHHHHhccCCC--CchHHHHHHHHHH
Confidence 1111111 22345555555555443 5677999998887643 222222 4456666666552 3445555567777
Q ss_pred HHhhcCC-hHHHHHHHHCCcHHHHHHHH---HhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 453 FALGHGN-LRFKGLAKEARAAEVLREVE---ERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 453 ~~L~~~~-~~~~~~i~~~g~i~~L~~ll---~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
..+|+.. .+.... -...++.+.+.. +..+++.++++...|..+-...|.
T Consensus 238 ~~i~r~ag~r~~~h--~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSH--LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHhcchhhcc--cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 8888732 122111 134566666665 667788888888877666554443
No 158
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.37 E-value=0.78 Score=51.63 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=56.3
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHH
Q 009320 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349 (537)
Q Consensus 270 ~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~ 349 (537)
+...+.+.+++.-.--.|.+.+........+ .+..+.+=|.+.++.+|-.|.++|..|=.. -....++++
T Consensus 62 K~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ 131 (757)
T COG5096 62 KNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDP 131 (757)
T ss_pred HHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHH
Confidence 3333445555554444444554432222111 134444445555555555555555433100 001123445
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHH
Q 009320 350 LMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNL 411 (537)
Q Consensus 350 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nL 411 (537)
+.+++.++++.+++.|+-++.++=.. ......++|.+..+..++.+.+ +...|+.+|..+
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 55555555555555555555554322 1222334455555555554322 333344444443
No 159
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.013 Score=57.27 Aligned_cols=47 Identities=13% Similarity=-0.120 Sum_probs=38.8
Q ss_pred ccccccccccc--CC-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMF--DP-VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~--dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.-|-||+.=|. |- +++||-|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 66999987663 33 4689999999999999998766689999988764
No 160
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.35 E-value=0.58 Score=51.64 Aligned_cols=258 Identities=14% Similarity=0.123 Sum_probs=148.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHH--HHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEEL--RVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~--r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
-.++..|++.++.++.+|+..+..++.--... -..+...| ..|...|....+++.-..+.+|..+... .-.|..=
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 45667789999999999999999887421111 11222233 2356677788888887777766655431 1111111
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhH
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
--.+.+|.|.-+|++....++++.+.++..++.........- ...+--.|+++|+..+...+++|..++..++..-
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI--- 956 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI--- 956 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc---
Confidence 124788999999999999999999999999986643221111 1234446889999988899999988876664321
Q ss_pred HHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh-CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 380 VKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILD-ANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
-=..++..|+.-|...+.+.+.+..+. ...+.+ .|-...|-.+|..=.+....++. ++|.+||.-
T Consensus 957 ---GPqdVLatLlnnLkvqeRq~RvcTtva--------IaIVaE~c~pFtVLPalmneYrtPe~nVQn---GVLkalsf~ 1022 (1172)
T KOG0213|consen 957 ---GPQDVLATLLNNLKVQERQNRVCTTVA--------IAIVAETCGPFTVLPALMNEYRTPEANVQN---GVLKALSFM 1022 (1172)
T ss_pred ---CHHHHHHHHHhcchHHHHHhchhhhhh--------hhhhhhhcCchhhhHHHHhhccCchhHHHH---hHHHHHHHH
Confidence 112344444444443333333333321 112222 22233344444431123444554 445555542
Q ss_pred ChH----HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 459 NLR----FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 459 ~~~----~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
-+. .+..+. .+.+.|..-+-+.+.--++-|..+++.|+-..+
T Consensus 1023 FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 211 222221 233444455667777888888888888886643
No 161
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.27 E-value=0.58 Score=50.00 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=108.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCH----HHHHHHHHHHHHhhcChhhHHH
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESE----RTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
...+..++.+++...+..|..-|..|+.+......+....++..|..++.+++. ......+.++..|-...-.--.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456777889999998888999999999998888888888889999999998743 4455555565554433222222
Q ss_pred HHhcCcHHHHHHHhc----CCchHHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 382 LVKLNAVATLLTMVK----SGESTSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~----~~~~~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
.+...+|.....+.. +......|+.+|.++..+++ -+..+.++--+..|+..+.. .+..++..|++.+-.+-
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~---~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV---SNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence 233344445555443 33456779999999998776 56666667779999999988 78888888888888877
Q ss_pred c
Q 009320 457 H 457 (537)
Q Consensus 457 ~ 457 (537)
.
T Consensus 242 ~ 242 (713)
T KOG2999|consen 242 R 242 (713)
T ss_pred h
Confidence 6
No 162
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.26 E-value=0.11 Score=48.84 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcccCcchhhHHhh----------------cCchHHHHHHhccC------CHHHHHHHHHHHHHhhcCh
Q 009320 319 ESQEHAAGALFSLALEDENKMAIGV----------------LGALQPLMHALRAE------SERTRHDSALALYHLTLIQ 376 (537)
Q Consensus 319 e~~~~Aa~~L~~Ls~~~~~k~~I~~----------------~g~l~~Lv~lL~~~------~~~~~~~A~~aL~nLs~~~ 376 (537)
.....++.+|.||+..+.....+.+ ...+..|++.+..+ ...-....+.++.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 3445667788888877766554431 23688888888773 2234567788999999999
Q ss_pred hhHHHHHhc--Cc--HHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHH
Q 009320 377 SNRVKLVKL--NA--VATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSIL 430 (537)
Q Consensus 377 ~n~~~iv~~--g~--v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~L 430 (537)
+.|..+++. +. +..|+.++...+. +.-++.+|.|+|-..+....+.....+..|
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iL 149 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDIL 149 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhH
Confidence 999999973 34 6677776665543 333899999999999888888865433333
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.16 E-value=0.026 Score=47.31 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHH--HHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 445 RENCVAALFALGHGNLRFKGLAKEARAAEVLREV--EERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 445 ~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l--l~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
+...+.+|.+||..+...+..+.+.|+++.++.. ....+|-+++.|..++++|...-++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 5677899999999998999999999999999987 5567899999999999999988554
No 164
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.16 E-value=0.47 Score=43.06 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=92.6
Q ss_pred HHHHhcCcHHHHHHHhcCCch--------HHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 380 VKLVKLNAVATLLTMVKSGES--------TSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~~--------~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
...++.|++..|++++.++.. ...++.++..|-...- +.+ ..+...|..++..+... ..+..+.+.|++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~-~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSS-AMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccc-cccchHHHHHHH
Confidence 456788999999999986552 2225666666655432 332 44456788888888863 237889999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
+|-+++..++.....+.++=-++.|+..++..++.++.+|..++-.|-...+++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988876777777777899999999999999999999995555444443
No 165
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1.9 Score=48.13 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=58.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhc
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRS 303 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~ 303 (537)
.|.+-|++.+..++-.|+.+|.+++- ++.. ..+.|-+.++++..++.++..|+.++..+-. .++..+.+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s--~Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f--- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICS--PEMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF--- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCC--HHHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh---
Confidence 34455677788888888888888873 2221 2346778888999999999999988877654 33333322
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
++.-.++|.+.+.-+.......+..++
T Consensus 181 --~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 181 --VIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred --hHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 233334444444444444444444443
No 166
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.99 E-value=0.76 Score=52.07 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=118.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHH-HHHHH---HHHHhcCCCccHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQ-TNAVA---SLVNLSLEKKNKV 298 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~-~~a~~---~L~nLs~~~~~k~ 298 (537)
+..+++.|+..+.++|..|+++|.-|...-.+.+..- .++-|..-+-++....+ ..++. .+.|++- ...
T Consensus 49 v~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P---~~~ 121 (1233)
T KOG1824|consen 49 VKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPP---SSS 121 (1233)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCC---ccc
Confidence 4678999999999999999999998884333222211 12222222112222111 12222 2334442 112
Q ss_pred HHHhcCCHHHHHHHHccC------CHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 299 LIVRSGFVPLLIDVLKSG------SEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
......+.+.+...|... ...++-.++.+|..+-..- ..-.. ...+.+..++.-+.+....+++.|..+|..
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 222223334444333322 1224444444444332111 00000 124456666666776667789999999999
Q ss_pred hhcChhhHHHHHhcCcHHHHHHHhcCCch--H-HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHH
Q 009320 372 LTLIQSNRVKLVKLNAVATLLTMVKSGES--T-SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 372 Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~-~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
|+.... ...-.+++..|++-|....- . .--..+|..+|.....|-----...++.+.+.....+.++++.+|.+
T Consensus 201 la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 201 LASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 886422 22334566777776654321 1 11344444444433222111123457888888844344789999999
Q ss_pred HHHHHHhhcCC
Q 009320 449 VAALFALGHGN 459 (537)
Q Consensus 449 ~~~L~~L~~~~ 459 (537)
+.+|..+....
T Consensus 278 lQale~fl~rc 288 (1233)
T KOG1824|consen 278 LQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHHhC
Confidence 99998877643
No 167
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=1.8 Score=48.09 Aligned_cols=258 Identities=15% Similarity=0.094 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcC-ChHHHHHH-HHc-cCCHHHHHHHHHHHHHhcCC-CccHHHHHhcC-CHHHH
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTP-NLLSALRN-LVV-SRYSIVQTNAVASLVNLSLE-KKNKVLIVRSG-FVPLL 309 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~-lL~-s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g-~v~~L 309 (537)
...++.++++|.-++.+-... ...... .++-.++. +.+ .++..++-.|+.+|.|--.. ..|-..=.+.+ ++...
T Consensus 144 ~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvv 222 (859)
T KOG1241|consen 144 SMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVV 222 (859)
T ss_pred hHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeee
Confidence 347788899999888653222 333222 23333333 333 35678999999999865432 22222222222 23455
Q ss_pred HHHHccCCHHHHHHHHHHHHHcccCc-c-hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-----------
Q 009320 310 IDVLKSGSEESQEHAAGALFSLALED-E-NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ----------- 376 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~~L~~Ls~~~-~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~----------- 376 (537)
+..-.+++.+++..|...|..+.... + -+..+ ....+..=+.-+++.++++...+...=.++|...
T Consensus 223 cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 223 CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667788899999999888875432 1 22222 2334445556677888888877776666565321
Q ss_pred ------hhHHHHHh--cCcHHHHHHHhcC--C----c-h-HHH----HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhc
Q 009320 377 ------SNRVKLVK--LNAVATLLTMVKS--G----E-S-TSR----VLLILCNLAASNEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 377 ------~n~~~iv~--~g~v~~Lv~lL~~--~----~-~-~~~----al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
.+..-+.. .+++|.|+++|.. . + + ..+ |+..+..+|. ...++.++..++.
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~----------D~Iv~~Vl~Fiee 371 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG----------DDIVPHVLPFIEE 371 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc----------ccchhhhHHHHHH
Confidence 11111221 3688899998842 1 1 1 233 3333333332 3334444444442
Q ss_pred -cCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 437 -SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 437 -~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
-...+-+.++.|+.++..+-.+.+..+-.-.-.++++.++.++.+.+--+++.+++.|-.+.+.-++.
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh
Confidence 11268889999999999999887655554455788999999999888999999999998888776544
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.97 E-value=0.013 Score=60.35 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=39.2
Q ss_pred CCCCCccccccccccccCCe----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPV----VVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
..+-+--+||+|++=|.+-| ++.|-|+|--+|+.+|+.. +||+||-...
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 33334458999999998887 5799999999999999765 7999986443
No 169
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.95 E-value=2.2 Score=42.83 Aligned_cols=221 Identities=17% Similarity=0.114 Sum_probs=140.0
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHh-hcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHh-cCCH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNKVLIVR-SGFV 306 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k~~i~~-~g~v 306 (537)
++-+.-.+.-|+.+|.++... .+.|..+ .+...--.++..++. ++..+|-+.+-++..|+.++.....+-. .+.+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555677788999999864 4555554 444444556666654 4578899999999999987766533332 3556
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHcccCcchhhHHhh---cCchHHHHHHhccC---CHHHHHHH----------H---
Q 009320 307 PLLIDVLKSGS-EESQEHAAGALFSLALEDENKMAIGV---LGALQPLMHALRAE---SERTRHDS----------A--- 366 (537)
Q Consensus 307 ~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~---~g~l~~Lv~lL~~~---~~~~~~~A----------~--- 366 (537)
.-|+++.+... ..+...+++++.++..- ..|..|.. .|-+.+-+++|... +++.+..- .
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 67777776543 44666778888887762 22333332 34344445555432 22222111 0
Q ss_pred -------HHHHH--hhc---------ChhhHHHHHh--cCcHHHHHHHhcCCc---hHHHHHHHHHHHhc-ChhhHHHHH
Q 009320 367 -------LALYH--LTL---------IQSNRVKLVK--LNAVATLLTMVKSGE---STSRVLLILCNLAA-SNEGRSAIL 422 (537)
Q Consensus 367 -------~aL~n--Ls~---------~~~n~~~iv~--~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~-~~~~r~~i~ 422 (537)
.-|.. |+. +..|...+.+ ..++..|.++|+... ...-|+.=|..+.. .|++++.+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 00111 221 2346666665 358899999997432 33345655666554 789999999
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..|+-+.+.+++.+ .+++++-.|+.++..+-
T Consensus 397 Kyg~k~~im~L~nh---~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINH---DDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcC---CCchhhHHHHHHHHHHH
Confidence 99999999999998 88999999999987654
No 170
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=1.7 Score=50.55 Aligned_cols=218 Identities=17% Similarity=0.114 Sum_probs=126.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchH
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQ 348 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~ 348 (537)
++.+..+|..+..+|..++..+........ ......|..-+++....++...+.+|..|-.... ....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 345788999999999998876444333322 1223444445555455555555555555432222 22222 23455
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcC------cHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHH
Q 009320 349 PLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLN------AVATLLTMVKSG---ESTSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 349 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g------~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~ 419 (537)
.++-.++..+...++.|..+|..++. .....+.| .+...+..+..+ +........|..+...-..-.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 55555577788899999999998873 11222222 555555555433 222222221322222111112
Q ss_pred HHHhCC----cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHH
Q 009320 420 AILDAN----GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE 495 (537)
Q Consensus 420 ~i~~~g----~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~ 495 (537)
.+.+.+ .+..+...|.. +++.++..|++.+.-++..-+...-.-..+.+++.+..+.++.+..++.++..+|.
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 222333 34455556665 79999999999999999854432222223346888888999999999999999996
Q ss_pred Hhhc
Q 009320 496 MLKG 499 (537)
Q Consensus 496 ~L~~ 499 (537)
.|..
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 6654
No 171
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.015 Score=59.13 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=52.6
Q ss_pred ccccccccccccCC-----eecCCCccccHHHHHHHHHcCC-CCCCCCCCCCCCCCCcccHHHHHHHH---HHHHH
Q 009320 28 EFLCPVSGSLMFDP-----VVVSTGQTFDRVSVQVCRELGF-LPDLENGFKPDFSTVIPNLAMKQTIL---NWCDT 94 (537)
Q Consensus 28 ~~~CpI~~~~m~dP-----V~~~~G~ty~r~~i~~~~~~~~-~~cp~~~~~~~~~~l~pn~~l~~~i~---~~~~~ 94 (537)
--+||||++=+.=| |++.|||-|--.||++|+-+.. ..||.|.-.-....+.|-+++|...+ .||..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rl 79 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRL 79 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35799999988887 4689999999999999995322 26999988777778999888876653 36543
No 172
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=2.8 Score=46.37 Aligned_cols=214 Identities=14% Similarity=0.158 Sum_probs=130.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC-CccHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLE-KKNKV 298 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~-~~~k~ 298 (537)
+..++|++.|...++.++-.|+..|+.|++.++.+...+ -|.+.+++.. .+-=+....+....+|+-- +....
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh
Confidence 445899999999999999999999999999998876543 5778887753 3444566777777888763 33333
Q ss_pred HHHhcCCHHHHHHHHccCCH-HHHHHHHHHHH--HcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 299 LIVRSGFVPLLIDVLKSGSE-ESQEHAAGALF--SLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~--~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
. .+++|..++.+... .+.-.++.++. +++... +.-..+ .-.+..|-.++.+.++..+--++.|+..+.-
T Consensus 256 K-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 256 K-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred h-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 3 36788888887652 22223333332 222221 111111 1245666677778888888888888887764
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
... ..|.+ --...+++|.+. +++-+|+..|..+.+.. +-.. .+..|+..+... +....+..-+.-+
T Consensus 329 tHp---~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~a--e~t~yrdell~~I 396 (877)
T KOG1059|consen 329 THP---KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKA--EGTNYRDELLTRI 396 (877)
T ss_pred hCH---HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhc--cchhHHHHHHHHH
Confidence 221 11221 123445567654 46778999888876533 2222 234555555441 2234555555555
Q ss_pred HHhhcC
Q 009320 453 FALGHG 458 (537)
Q Consensus 453 ~~L~~~ 458 (537)
..+|..
T Consensus 397 I~iCS~ 402 (877)
T KOG1059|consen 397 ISICSQ 402 (877)
T ss_pred HHHhhh
Confidence 666653
No 173
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=2 Score=47.30 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCccHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSL-EKKNKVLI 300 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~-~~~~k~~i 300 (537)
..+-+-|.|.++..+..|+.++.++-. .+.+..+. .-|+ ++|-++ ..-++..|+-+|+.|-. .++. +
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~ 183 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---V 183 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---c
Confidence 445556677788888888888888753 22332222 1233 445443 34567777777777665 3321 1
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
--.+...+++++|.+.+..+...+...+-.|+.
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 112445677777776665555555555555553
No 174
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.81 E-value=0.6 Score=49.89 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=113.2
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch---HHHHHHHHHHHhcChh-hHH--H
Q 009320 347 LQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES---TSRVLLILCNLAASNE-GRS--A 420 (537)
Q Consensus 347 l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~---~~~al~~L~nLa~~~~-~r~--~ 420 (537)
...+.+++.+++...+..|+.-|..|+........+++..++..|..++.++.. .+.....|..++..-+ +-. .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345668888888888888999999999999999999999999999999987764 1222333333332111 110 0
Q ss_pred HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 421 ILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 421 i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.+...+|.....+... ...+..+-..|+.+|-++..++....+.+.++--+..|+..+..++.+++.+|..++..|-..
T Consensus 165 ~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 1123334444444432 124566778899999999988877788888888899999999999999999999999777766
Q ss_pred CCCC
Q 009320 501 EDDD 504 (537)
Q Consensus 501 ~~e~ 504 (537)
.+++
T Consensus 244 a~~~ 247 (713)
T KOG2999|consen 244 APDD 247 (713)
T ss_pred CChH
Confidence 6655
No 175
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.77 E-value=3.1 Score=46.95 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=120.8
Q ss_pred HccCCHHHHHHHHH-HHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHH
Q 009320 272 VVSRYSIVQTNAVA-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPL 350 (537)
Q Consensus 272 L~s~~~~v~~~a~~-~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~L 350 (537)
+.+.+...+..|+. +|..++..++.-.. .+-+++.....+.|++...--.|...+........+ +++.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 56667777777776 66688876663332 345666666788999998888888888777644444 46677
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHH
Q 009320 351 MHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVS 428 (537)
Q Consensus 351 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~ 428 (537)
.+=+.+.++.++..|+.+|..| +..-+-..+++++.+++.++. ++..|+-++..+=. -.++.+.+.|.+.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~ 169 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLID 169 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHH
Confidence 7888889999999999988766 333344457888888888776 45556666665532 2455666778888
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.+..++.+ .++.+..+|+.+|..+...
T Consensus 170 ~l~~l~~D---~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVAD---SDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhC---CCchHHHHHHHHHHHhchh
Confidence 88889987 7999999999999998764
No 176
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=2 Score=47.96 Aligned_cols=258 Identities=18% Similarity=0.175 Sum_probs=144.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCc-----c
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKK-----N 296 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~-----~ 296 (537)
.+.+-+.|++....+..+|++.+..|.....+.-. .++..|--++++....++-.|+.+|..++. ++. |
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 34556667888899999999999999854432211 167788888888999999999999999987 332 1
Q ss_pred --HHHHH-hcC---CHHHHHHHHccCCHHHHHHHHHHHHHccc--CcchhhHHh-------------hcCchHHHHHHhc
Q 009320 297 --KVLIV-RSG---FVPLLIDVLKSGSEESQEHAAGALFSLAL--EDENKMAIG-------------VLGALQPLMHALR 355 (537)
Q Consensus 297 --k~~i~-~~g---~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~k~~I~-------------~~g~l~~Lv~lL~ 355 (537)
-+.++ +.+ .-.++..+|+.|+......-..-+.++.. .+++|..+. ..+.+..|-.+|+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr 401 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR 401 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 11122 111 23455566776665443333333322221 122221111 1233444555554
Q ss_pred cC-CHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHH
Q 009320 356 AE-SERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 356 ~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~l 433 (537)
+. .-+.++....++..+.. +++.+ .-++..|...+.+......+..+|.-|-.. +-.......-|..+...
T Consensus 402 ~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce~~~i~~rILhlLG~E--gP~a~~Pskyir~iyNR 474 (865)
T KOG1078|consen 402 EEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCEFTQIAVRILHLLGKE--GPKAPNPSKYIRFIYNR 474 (865)
T ss_pred hccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhccchHHHHHHHHHHhcc--CCCCCCcchhhHHHhhh
Confidence 42 23444455555444322 33322 224455666666655555566666554210 00000111223344333
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 434 LRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 434 L~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.- .+.-++..|+.+|..+....+.. ...+...|...+.+.+..+++.|...|..+.+.
T Consensus 475 viL---En~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 475 VIL---ENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhh---hhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 322 56778888899998887544322 223344556678899999999999999999844
No 177
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.23 Score=53.92 Aligned_cols=220 Identities=19% Similarity=0.136 Sum_probs=136.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc------ch
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED------EN 337 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~------~~ 337 (537)
+...|..+..+.+..|+..|+..|+.|+..-+.-.. .....++.++.....+|..|+.+++-..... ++
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 344466676777888888888888777752222122 2467788999888999999988777654221 11
Q ss_pred hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhcCcHHHHHHHhcCCchHHH-HHHHHHHH----
Q 009320 338 KMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ-SNRVKLVKLNAVATLLTMVKSGESTSR-VLLILCNL---- 411 (537)
Q Consensus 338 k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~g~v~~Lv~lL~~~~~~~~-al~~L~nL---- 411 (537)
-..-....++..+.+.+++.+-.++-.|+++|..+-... +.-.+..+ +.++.-+.......+ ......+-
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 111112356778888888887778888888877664321 11111111 111111110000011 11111111
Q ss_pred -----hc-----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh
Q 009320 412 -----AA-----SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 412 -----a~-----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
+. .+++-..++.+|+--.++.-|.+ +--+++++|+..|+.|+..++.+.... +.-|+.+..+
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfND 421 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFND 421 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhcc
Confidence 00 11233446667777778877776 567899999999999999877665443 5688999999
Q ss_pred CCHHHHHHHHHHHHHhhcC
Q 009320 482 GSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 482 ~s~~~k~~A~~lL~~L~~~ 500 (537)
.-..++.+|...|..++.+
T Consensus 422 E~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876
No 178
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.54 E-value=2.2 Score=43.21 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=105.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CC-ccHHH------
Q 009320 228 KKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EK-KNKVL------ 299 (537)
Q Consensus 228 ~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~-~~k~~------ 299 (537)
..+++.+..+++.|+++|.-++--+.+.-. ..++.+...+..++..++..|+.+|..+.. +. .....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 566889999999999999988754432211 236778887777899999999999987764 22 11111
Q ss_pred -HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC----CHHHHHHHHH-HHHHhh
Q 009320 300 -IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE----SERTRHDSAL-ALYHLT 373 (537)
Q Consensus 300 -i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~----~~~~~~~A~~-aL~nLs 373 (537)
......+..+.+.|.+.+++++..|+..+..|-....... ...++..|+-+-.++ +.+ .+.++. .+-..+
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~-LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQR-LRQCLSVFFPVYA 184 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHH-HHHHHHHHHHHHH
Confidence 1223567778888888899999999999988754433221 134555665555443 233 344444 444566
Q ss_pred cChhhHHHHHhcCcHHHHHHHhcC
Q 009320 374 LIQSNRVKLVKLNAVATLLTMVKS 397 (537)
Q Consensus 374 ~~~~n~~~iv~~g~v~~Lv~lL~~ 397 (537)
......+..+....++.+..+...
T Consensus 185 ~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 185 SSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 655544566666777777776653
No 179
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.52 E-value=3 Score=42.52 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=98.6
Q ss_pred ccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcC---hhhHHHHHhcCcH
Q 009320 314 KSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLI---QSNRVKLVKLNAV 388 (537)
Q Consensus 314 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~~iv~~g~v 388 (537)
.......|+.+...|..+-........+.. ...+..+.+.++.++.+-+..|+.++.-|+.. ......+.+ .+.
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHH
Confidence 333455555555555544322222222221 23567788888888766666666666665543 234444444 578
Q ss_pred HHHHHHhcCCc----hHHHHH---HHHHHHhcCh-hhHHHHHhCCcHHHH--HHHHhcc-------CCCCHHHHHHHHHH
Q 009320 389 ATLLTMVKSGE----STSRVL---LILCNLAASN-EGRSAILDANGVSIL--VGMLRES-------GSDSEATRENCVAA 451 (537)
Q Consensus 389 ~~Lv~lL~~~~----~~~~al---~~L~nLa~~~-~~r~~i~~~g~I~~L--v~lL~~~-------~~~~~~~~e~A~~~ 451 (537)
|.|...+.++. .+..++ +++.-++... +...... ..+..+ ...+... ...++.+...|+.+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 88888887654 222333 3333333322 1111111 111111 1111110 01235677777777
Q ss_pred HHHhhcCChH--HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 452 LFALGHGNLR--FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 452 L~~L~~~~~~--~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..-|...-+. ....+ ...++.|..++.+.+..+|-.|.+.|..|-+..
T Consensus 210 W~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 6666653222 33222 356899999999999999999999998886543
No 180
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.45 E-value=1.5 Score=42.99 Aligned_cols=143 Identities=20% Similarity=0.160 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHhh-cChhhHHHHHh-cCcHHHHHHHh-------cCCc-------hHHHHHHHHHHHhcChhhHHHH
Q 009320 358 SERTRHDSALALYHLT-LIQSNRVKLVK-LNAVATLLTMV-------KSGE-------STSRVLLILCNLAASNEGRSAI 421 (537)
Q Consensus 358 ~~~~~~~A~~aL~nLs-~~~~n~~~iv~-~g~v~~Lv~lL-------~~~~-------~~~~al~~L~nLa~~~~~r~~i 421 (537)
+++.++.|+.-|..-- ..++-...+.. -|.+..|++=+ ..+. ....|++.|..+|++++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4666777766655432 23444555554 68888888733 2222 2344888899999999999999
Q ss_pred HhCCcHHHHHHHHhccCCC--CHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 422 LDANGVSILVGMLRESGSD--SEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~--~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.+++..-.|...|...... -+..|-.+++++..|.. ++.++...+.+..+++..+..++.|++-.|..|..+++.+=
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999877777777662111 25678889999999998 44567778888999999999999999999999999996554
Q ss_pred cC
Q 009320 499 GR 500 (537)
Q Consensus 499 ~~ 500 (537)
.+
T Consensus 168 ~d 169 (262)
T PF04078_consen 168 LD 169 (262)
T ss_dssp HS
T ss_pred cc
Confidence 43
No 181
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=94.42 E-value=0.16 Score=48.84 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhcChhhHHHHHhCCc-------HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHCCc
Q 009320 400 STSRVLLILCNLAASNEGRSAILDANG-------VSILVGMLRESGSDSEATRENCVAALFALGHGNLR-FKGLAKEARA 471 (537)
Q Consensus 400 ~~~~al~~L~nLa~~~~~r~~i~~~g~-------I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~ 471 (537)
.+..|+.+|+.||-.+.|.+.+...+- +..|+++|.. .++.-.+|.|+..|.+||.+++. .+.++.+.++
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 356699999999999888888776543 4555666655 36889999999999999997755 4468888999
Q ss_pred HHHHHHHHHhCCHHHHHHH
Q 009320 472 AEVLREVEERGSQRAKEKA 490 (537)
Q Consensus 472 i~~L~~ll~~~s~~~k~~A 490 (537)
+..|+.++++....++..+
T Consensus 218 i~~Li~FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAHQVA 236 (257)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999987766555443
No 182
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=7.3 Score=43.20 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=143.2
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-C-ccHHHH
Q 009320 225 ELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-K-KNKVLI 300 (537)
Q Consensus 225 ~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~-~~k~~i 300 (537)
.+-+.|.|+ ..-++..|+-+|..|-+.+++. +...+-...++.+|.+.+-.+.-.+...+..|++. + .-+..+
T Consensus 150 DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~ 226 (938)
T KOG1077|consen 150 DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL 226 (938)
T ss_pred hhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH
Confidence 344556443 3345666777777777765542 22335577888999888877778888888888773 2 223222
Q ss_pred H-hcCCHHHHHHHHc----------cCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHHhccC----CHH---
Q 009320 301 V-RSGFVPLLIDVLK----------SGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHALRAE----SER--- 360 (537)
Q Consensus 301 ~-~~g~v~~Lv~lL~----------~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~lL~~~----~~~--- 360 (537)
- ..+.+..++..-. -+.+-++...+++|.+.-..++ .|..+. .+++.++...+.. +..
T Consensus 227 ~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 227 PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhh
Confidence 2 1122222222111 1346678888888887743333 333332 2233333333321 111
Q ss_pred HHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcC--CchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc
Q 009320 361 TRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES 437 (537)
Q Consensus 361 ~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~--~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~ 437 (537)
++...+--..+|... ++....+++ ++..|-++|.+ .+.+-.++..++.||++....+++..+ ...++..|+.
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkt- 379 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKT- 379 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcc-
Confidence 111111122234332 333333333 56677777864 457777999999999998777777755 5778888874
Q ss_pred CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHH
Q 009320 438 GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAK 491 (537)
Q Consensus 438 ~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~ 491 (537)
..+-.++..|+-.|+.+|..+ ..+.++ .-|++-+.+.+..+|+.-+
T Consensus 380 -erDvSirrravDLLY~mcD~~-Nak~IV------~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 380 -ERDVSIRRRAVDLLYAMCDVS-NAKQIV------AELLQYLETADYSIREEIV 425 (938)
T ss_pred -ccchHHHHHHHHHHHHHhchh-hHHHHH------HHHHHHHhhcchHHHHHHH
Confidence 167889999999999999744 233332 2455556666666665444
No 183
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.042 Score=56.14 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=38.3
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHHcCC--CCCCCCCC
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGF--LPDLENGF 71 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~--~~cp~~~~ 71 (537)
-|.|||.++--.| |+.+.|||..+|.+|-+-...|. .-||-|..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4799999999887 99999999999999999888876 46888743
No 184
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.026 Score=60.43 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=42.7
Q ss_pred Cccccccccccc----cCCeecCCCccccHHHHHHHHHcCCCCCCC--CCCCCCCCCCcccHHHHHHHH
Q 009320 27 KEFLCPVSGSLM----FDPVVVSTGQTFDRVSVQVCRELGFLPDLE--NGFKPDFSTVIPNLAMKQTIL 89 (537)
Q Consensus 27 ~~~~CpI~~~~m----~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~--~~~~~~~~~l~pn~~l~~~i~ 89 (537)
+-++|+||...| ..||.+.||||.||.|.+.-... .++||. .......+...-|++|-+.+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~-scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA-SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc-cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 458899998887 47999999999999999886655 223332 112223345666787766653
No 185
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.17 E-value=0.46 Score=46.68 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHc
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLK 314 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~ 314 (537)
....|++.|..++--++..|..+.....+..|+++|. ...+.++..++.+|..+-. ++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3556889999999889999999999999999999994 4678999999998876554 6789999999999999999998
Q ss_pred cC--CHHHHHHHHHHHHHc
Q 009320 315 SG--SEESQEHAAGALFSL 331 (537)
Q Consensus 315 ~~--~~e~~~~Aa~~L~~L 331 (537)
+. +.+++..++..|+-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 75 467888888777643
No 186
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.13 E-value=1.2 Score=43.09 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCCHHHH
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-----SRYSIVQTNAVASLVNLSLEK--KNKVLIVRSGFVPLL 309 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-----s~~~~v~~~a~~~L~nLs~~~--~~k~~i~~~g~v~~L 309 (537)
..-.|+..|.-++ ..++.|..+..+..--.|-.+|. .+.+-++-.++.+|..|.+.+ +.-..+...++||..
T Consensus 95 RVcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 3344566666666 45777777777665444555553 235678899999999999844 334556678999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--------cCchHHHHH-HhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 310 IDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--------LGALQPLMH-ALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--------~g~l~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
++.+..|+...+..|+.++..+-.++.+-..|.+ .-.+..++. +.+.++++..++.+.+..+|+.++..|.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999888777766555552 112223322 2334577788888888888887776665
Q ss_pred HHH
Q 009320 381 KLV 383 (537)
Q Consensus 381 ~iv 383 (537)
.+-
T Consensus 254 aL~ 256 (293)
T KOG3036|consen 254 ALR 256 (293)
T ss_pred HHH
Confidence 544
No 187
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=4.5 Score=45.12 Aligned_cols=232 Identities=15% Similarity=0.140 Sum_probs=140.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHh------------------hcCChHHHHHHHHccC-------CHHHH
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSI------------------CTPNLLSALRNLVVSR-------YSIVQ 280 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i------------------~~~g~i~~Lv~lL~s~-------~~~v~ 280 (537)
-+...+|++.++..+|++.=..++.+.-+.-... .-.+++|.|+++|... +....
T Consensus 264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~ 343 (859)
T KOG1241|consen 264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA 343 (859)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence 3445578899999999888776664332211000 1236788888888531 23455
Q ss_pred HHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCH
Q 009320 281 TNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESE 359 (537)
Q Consensus 281 ~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~ 359 (537)
..|-.+|.-++..- +..|+. .+++-+=.-+++++..-|+.|+-++..+-..++ .+..-...+++|.++.++.+.+-
T Consensus 344 kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 344 KAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 55666666555311 111222 223222236677888899999888888766554 34333357899999999997777
Q ss_pred HHHHHHHHHHHHhhcC-hhhHHH-HHhcCcHHHHHHHhcC-CchHHHHHHHHHHHhcCh--hhHHH----HHhCCcHHHH
Q 009320 360 RTRHDSALALYHLTLI-QSNRVK-LVKLNAVATLLTMVKS-GESTSRVLLILCNLAASN--EGRSA----ILDANGVSIL 430 (537)
Q Consensus 360 ~~~~~A~~aL~nLs~~-~~n~~~-iv~~g~v~~Lv~lL~~-~~~~~~al~~L~nLa~~~--~~r~~----i~~~g~I~~L 430 (537)
-++..++|+|..++.. ++.+.. ..-.+.+..|++-|.+ +.+...+++++.+|+... ..+.. ... ...+.+
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~i 499 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAI 499 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHH
Confidence 7888999999998753 333322 2235677788877765 447778999999998421 11111 111 122233
Q ss_pred HH-HHhccC---CCCHHHHHHHHHHHHHhhcCChH
Q 009320 431 VG-MLRESG---SDSEATRENCVAALFALGHGNLR 461 (537)
Q Consensus 431 v~-lL~~~~---~~~~~~~e~A~~~L~~L~~~~~~ 461 (537)
++ ++...+ ......|..|-.+|..|..+...
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 33 333211 13456788888999998886543
No 188
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.048 Score=52.10 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=41.7
Q ss_pred CCccccccccccccCC----eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 009320 26 PKEFLCPVSGSLMFDP----VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI 79 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~ 79 (537)
-..|+|||++-.|.+= ++-+|||.|.-.++.+.- ...|++|+..+..++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 3469999999999885 456999999999987753 34799999999887644
No 189
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.61 E-value=0.18 Score=43.39 Aligned_cols=68 Identities=18% Similarity=0.097 Sum_probs=58.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHh
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNL 290 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nL 290 (537)
++.|++.| .+.++....-|+.=|..+.+..+..|..+.+.|+-..++.++.+++++|+.+|+.++-.+
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 57889999 566778888899999999999999999999999999999999999999999999988654
No 190
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.05 Score=53.23 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=37.4
Q ss_pred cccccc-ccccCCee----cCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 30 LCPVSG-SLMFDPVV----VSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 30 ~CpI~~-~~m~dPV~----~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.||+|+ +.+..|-+ -+|||+.|.+|.-+-|..|...||.|+..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 488886 45556643 29999999999999999999999999887654
No 191
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.59 E-value=0.14 Score=44.12 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=57.5
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
.+..|+++|.. +.++.+...|+.-|..+++.-+..+.++.+.|+-..+++|+.+.++++|..|..+++.|
T Consensus 44 llk~L~~lL~~--s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDK--SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 37899999955 14677788888889999987677788889999999999999999999999999999654
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.50 E-value=4.5 Score=47.35 Aligned_cols=260 Identities=15% Similarity=0.113 Sum_probs=146.2
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-C---CccHHHH
Q 009320 226 LSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-E---KKNKVLI 300 (537)
Q Consensus 226 Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~---~~~k~~i 300 (537)
+.+.++. ...+.+..|++.|..|+..-.+. ..-..++|.++.++.+....||..|+.+|..+-. - +..-..|
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 3344432 45677888999999998643221 1224679999999999999999999998875532 1 2222223
Q ss_pred HhcCCHHHHHHHHccCC-HHHHHHHHHHHHHcccC------------------cchh---------hHHhh-cCchH-HH
Q 009320 301 VRSGFVPLLIDVLKSGS-EESQEHAAGALFSLALE------------------DENK---------MAIGV-LGALQ-PL 350 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~------------------~~~k---------~~I~~-~g~l~-~L 350 (537)
.-.=.+|.|-+++.+.+ .-+|..-|.-|..|+.. +.+- ....+ ...++ ..
T Consensus 504 F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v 583 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMV 583 (1431)
T ss_pred hHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHH
Confidence 33345677777777633 33444444444444321 1110 00000 01122 22
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhc----CcHHHHHHHhcCCchHHHH--HHHHHHHhcChhhHHHHHhC
Q 009320 351 MHALRAESERTRHDSALALYHLTLIQSNRVKLVKL----NAVATLLTMVKSGESTSRV--LLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 351 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~----g~v~~Lv~lL~~~~~~~~a--l~~L~nLa~~~~~r~~i~~~ 424 (537)
+.+|.+..+.+++.-+..|.-||.. ..+. =+++.|+.+|.+.+..-++ ...|..+|..-..|. +++
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~se 655 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSE 655 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHH
Confidence 3344444445555555555555431 1111 2566777777777654443 233333333222210 234
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 425 NGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 425 g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..+|.|.+-|.+ ..+-+...|+++|.-||..+--.+..+. ..++...-++-+.+.=+|+.++.++.......
T Consensus 656 yllPLl~Q~ltD---~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 656 YLLPLLQQGLTD---GEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHhccC---cchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 456777778877 7788999999999999985421122221 22334455677888889999998887666543
No 193
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.40 E-value=0.086 Score=38.11 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=25.8
Q ss_pred ccccccccccccCCee-cCCCcc--ccHHHHHHHHH-cCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVV-VSTGQT--FDRVSVQVCRE-LGFLPDLENGFK 72 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~-~~~G~t--y~r~~i~~~~~-~~~~~cp~~~~~ 72 (537)
.+.|||+...|+-||- ..|-|. ||-....+... .+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4789999999999995 577765 88766655444 334479999864
No 194
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.26 E-value=0.036 Score=61.89 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=38.9
Q ss_pred cccccccccccCCeecCCCccccHHHHHHHHH-cCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE-LGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~-~~~~~cp~~~~~~~~ 75 (537)
+.|+||.+ -.+||++.|||.||+.|+..-++ ....+||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 99999999999999999998554 344589999876544
No 195
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.01 E-value=3.3 Score=40.14 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHH
Q 009320 361 TRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILV 431 (537)
Q Consensus 361 ~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv 431 (537)
-.-+|+..|..++++++.|..++++.+--.|-.+|.... .+--++++|..|.... +....+...++|+..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 445677777889999999999999998888888875321 3344899999998755 3445566899999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCChHH---HHHHHHC----CcHHH-HHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 432 GMLRESGSDSEATRENCVAALFALGHGNLRF---KGLAKEA----RAAEV-LREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 432 ~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~---~~~i~~~----g~i~~-L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.+.. +++..+..|..+|..+-.++.+. .+....- .++.. +..+.+.++.+.-+++.++...|++.
T Consensus 175 rime~---GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMES---GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhc---ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99988 89999999999988876644321 1111111 12222 33456677888888888888777764
No 196
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.94 E-value=10 Score=37.31 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=106.6
Q ss_pred cCChHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh
Q 009320 261 TPNLLSALRNLVVSR--YSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK 338 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k 338 (537)
...+++.|+..|... .+-++..|..+|.++- ++. .++.|-+..+.+-.++++.+..+|..+-+.+...
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 455688888877643 4567777877777766 332 2344444555555677777777777764332211
Q ss_pred h------HHh-------hcCchHHHHHHhccCC-HH-HHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hH
Q 009320 339 M------AIG-------VLGALQPLMHALRAES-ER-TRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--ST 401 (537)
Q Consensus 339 ~------~I~-------~~g~l~~Lv~lL~~~~-~~-~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~ 401 (537)
. .+. ..+-+..|-..|.+.+ +- -+..|.-.|+|+- ...+|..|++-+..++ .+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----------~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----------TEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----------cHHHHHHHHHhcccchHHHH
Confidence 1 000 0111333333332221 11 1222222333321 1123444444444332 22
Q ss_pred HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh
Q 009320 402 SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 402 ~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
..+..++..| ....+|+.|.+.|.. ....+-+|..|+.+|..++. + .+++.|.+.+.+
T Consensus 205 hEvAfVfGQl----------~s~~ai~~L~k~L~d-~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D 262 (289)
T KOG0567|consen 205 HEVAFVFGQL----------QSPAAIPSLIKVLLD-ETEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGD 262 (289)
T ss_pred HHHHHHHhhc----------cchhhhHHHHHHHHh-hhcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCC
Confidence 3344444333 234568999998877 34788899999999998753 2 234566677777
Q ss_pred CCHHHHHHHHHHHHHhh
Q 009320 482 GSQRAKEKAKRILEMLK 498 (537)
Q Consensus 482 ~s~~~k~~A~~lL~~L~ 498 (537)
..+-+++.+.-.|.++-
T Consensus 263 ~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLE 279 (289)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 77788888888887654
No 197
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.82 E-value=12 Score=40.92 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
+..++.. ..++..++..|+..|..+.+.-++.... ++..++++..+++..|+..|+..|-.++.+ ++....++
T Consensus 25 y~~il~~-~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 25 YKEILDG-VKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp HHHHHHG-GGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 3445544 3468889999999999999887776554 589999999999999999999999999985 45666665
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc---cCCHHHHHHHHHHHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR---AESERTRHDSALALYH 371 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~---~~~~~~~~~A~~aL~n 371 (537)
..|+++|...+......+-.+|..|-..+. .+.+..|...+. ++++.+++.++..|..
T Consensus 99 -----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 99 -----DVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -----HHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 589999998886666666666665532221 344556666665 5677888888887754
No 198
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.036 Score=53.45 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=46.3
Q ss_pred CCCCCCCccccccccccccCCe----------ecCCCccccHHHHHHHHHcCC-CCCCCCCCCCCCCCCccc
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPV----------VVSTGQTFDRVSVQVCRELGF-LPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV----------~~~~G~ty~r~~i~~~~~~~~-~~cp~~~~~~~~~~l~pn 81 (537)
.|-.--++=.|-+|++=+.+-| .++|+|.|--.||.-|---|. .+||-|++.+..+.+..|
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 3334445678999999888777 589999999999999976554 479999887765444443
No 199
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=4.7 Score=46.43 Aligned_cols=264 Identities=19% Similarity=0.169 Sum_probs=157.6
Q ss_pred HHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCC---
Q 009320 242 VIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGS--- 317 (537)
Q Consensus 242 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~--- 317 (537)
-.+|-.+-+.+.++...+.++.++..++.++- +.+-+...+.++..|-. ++... ....+-.||..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence 34666777788888888888888888777763 33445555555555544 22210 1112336677776642
Q ss_pred ---------HHHHHHHHHHHHHccc-CcchhhHHhhcCchHHHHHHhcc----------CCHHHHHHHHHHHHH-----h
Q 009320 318 ---------EESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRA----------ESERTRHDSALALYH-----L 372 (537)
Q Consensus 318 ---------~e~~~~Aa~~L~~Ls~-~~~~k~~I~~~g~l~~Lv~lL~~----------~~~~~~~~A~~aL~n-----L 372 (537)
-.+.....++++.+.. +...+...++.+++..|...|.. ++.-....-...|+. +
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1234445567776653 33466667788888888777642 122222333344443 3
Q ss_pred hcChhhHHHHHhcCcHHHHHHHhcCC--------------------------chHH--HHHHHHHHHhc------Ch---
Q 009320 373 TLIQSNRVKLVKLNAVATLLTMVKSG--------------------------ESTS--RVLLILCNLAA------SN--- 415 (537)
Q Consensus 373 s~~~~n~~~iv~~g~v~~Lv~lL~~~--------------------------~~~~--~al~~L~nLa~------~~--- 415 (537)
+.++.|+.++-..=.-+....+|... .... .|+..+..+-. .|
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 34566765443322222223322211 1111 12333322211 11
Q ss_pred --hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHH---HhCCHHHHHHH
Q 009320 416 --EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVE---ERGSQRAKEKA 490 (537)
Q Consensus 416 --~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll---~~~s~~~k~~A 490 (537)
..++.+...|++..|++.+-. ..+..+-.-+..|..+++.++..+......|+++.|++++ .+++...-..|
T Consensus 897 fnpdk~~iynagavRvlirslLl---nypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLL---NYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHh---hChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 124567778999999997766 6888898889999999997777777888889999999974 46777888889
Q ss_pred HHHHHHhhcCC--CCCcchhhhhhhh
Q 009320 491 KRILEMLKGRE--DDDEDVDWEGVLD 514 (537)
Q Consensus 491 ~~lL~~L~~~~--~e~~~~d~~~v~~ 514 (537)
..++.+|...+ +.+..--|+-+..
T Consensus 974 lkIvemLgayrlspselsMlwryvaQ 999 (2799)
T KOG1788|consen 974 LKIVEMLGAYRLSPSELSMLWRYVAQ 999 (2799)
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHHH
Confidence 99998888775 4333445654444
No 200
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.71 E-value=0.028 Score=61.46 Aligned_cols=43 Identities=14% Similarity=-0.013 Sum_probs=20.2
Q ss_pred cccccccccCCee---cCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 31 CPVSGSLMFDPVV---VSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 31 CpI~~~~m~dPV~---~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
||+|..-+.|-.+ .+|||-||.+||..|-... .+||.|+..|.
T Consensus 126 CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~ 171 (1134)
T KOG0825|consen 126 CPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFG 171 (1134)
T ss_pred hhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhh
Confidence 4444444444333 2455555555555554432 24555555443
No 201
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.70 E-value=0.14 Score=36.90 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=32.6
Q ss_pred ccccccc--cccCCeecCCC-----ccccHHHHHHHHHcC-CCCCCCCC
Q 009320 30 LCPVSGS--LMFDPVVVSTG-----QTFDRVSVQVCRELG-FLPDLENG 70 (537)
Q Consensus 30 ~CpI~~~--~m~dPV~~~~G-----~ty~r~~i~~~~~~~-~~~cp~~~ 70 (537)
.|-||++ --.+|.+.||. |-|=+.|+.+|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 55788888985 779999999999764 45799884
No 202
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.31 E-value=11 Score=37.13 Aligned_cols=180 Identities=14% Similarity=0.119 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHHcccC-cchhhHHhh-cCchHHHHHHhcc-------C--CH---HHHHHHHHHHHHhhcChhhHHH
Q 009320 316 GSEESQEHAAGALFSLALE-DENKMAIGV-LGALQPLMHALRA-------E--SE---RTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~-~g~l~~Lv~lL~~-------~--~~---~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.+++.|+.|..-|..--.. ++-...+-. .|.+..|+.=+-+ + +. .-.-+|+..|..++++++.|..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 3677788776666554332 233333333 4766666443221 1 12 2334566777779999999999
Q ss_pred HHhcCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 382 LVKLNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
++++.+.-.|..+|.... .+--.++++..|...+ +....+.+.+.++..++.|+. +++-.+..|..++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~---GselSKtvAtfIl 163 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF---GSELSKTVATFIL 163 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH---S-HHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh---ccHHHHHHHHHHH
Confidence 999998888888886322 2233799999998844 566778889999999999998 8999999999888
Q ss_pred HHhhcCC----------hHHHHHHHHCCcHHHHH-HHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 453 FALGHGN----------LRFKGLAKEARAAEVLR-EVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 453 ~~L~~~~----------~~~~~~i~~~g~i~~L~-~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..+-.++ +++..+. .++..++ .+....+++.-+....+-..|+++.
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~---~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVA---MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHH---HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHcchhHHHHHhcCHHHHHHHH---HHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 8775533 3333222 2334443 3566778888888888877777663
No 203
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.14 E-value=7.2 Score=43.79 Aligned_cols=233 Identities=15% Similarity=0.105 Sum_probs=140.2
Q ss_pred hHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCCHHHHHHHHccCCHHH--HHHHHHHHH
Q 009320 253 EELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLV-NLSLEKKNKVLIVRSGFVPLLIDVLKSGSEES--QEHAAGALF 329 (537)
Q Consensus 253 ~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~-nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~--~~~Aa~~L~ 329 (537)
...|...+..|+..+|.++.....++.......+|. .++... .+. ...++++...+... ... .-.+..+|.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~~----~~v~~~~~s~~~~d-~~~~en~E~L~alt 567 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ERS----YEVVKPLDSALHND-EKGLENFEALEALT 567 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cch----hhhhhhhcchhhhh-HHHHHHHHHHHHhh
Confidence 445666778999999999988888777777777776 332211 111 12345555555432 122 224567888
Q ss_pred HcccCcc-hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH-HHHh-cCcHHHHHHHhcCCc--hHHHH
Q 009320 330 SLALEDE-NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV-KLVK-LNAVATLLTMVKSGE--STSRV 404 (537)
Q Consensus 330 ~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~-~iv~-~g~v~~Lv~lL~~~~--~~~~a 404 (537)
||+..++ .|..|.+.-+++.+-.++-..++..+..++..+.||.+.+..-. .+++ ...++.....+.... ..-.+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 8876554 56667766666666667777788899999999999998776433 3344 334454444443311 11113
Q ss_pred HHHHHHHhcChh-hHH-HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC
Q 009320 405 LLILCNLAASNE-GRS-AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG 482 (537)
Q Consensus 405 l~~L~nLa~~~~-~r~-~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~ 482 (537)
++++..+....+ ... ...-...-..++.++.+ .+..++...+....++.....+....+.....+..+..+....
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~ 724 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN 724 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 333333333222 222 22223445777788877 7889999999888887666656666666666677777665543
Q ss_pred CHHHHHHHHHHH
Q 009320 483 SQRAKEKAKRIL 494 (537)
Q Consensus 483 s~~~k~~A~~lL 494 (537)
-...++.+...|
T Consensus 725 ~a~~~~~~~~~l 736 (748)
T KOG4151|consen 725 RAPKREDAAPCL 736 (748)
T ss_pred hhhhhhhhhhHH
Confidence 344445444444
No 204
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.11 Score=53.08 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=41.1
Q ss_pred CCCCccccccccccccCCe-----e---cCCCccccHHHHHHHHHcC------CCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFDPV-----V---VSTGQTFDRVSVQVCRELG------FLPDLENGFKPD 74 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV-----~---~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~~ 74 (537)
..-.+..|=||++.-.+++ . .+|-|+||..||.+|-... ...||.||....
T Consensus 157 ~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 157 QKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred CccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 3355899999999999998 3 5699999999999998443 247999987653
No 205
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.99 E-value=0.61 Score=38.81 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
-.+++++..+.+.+..+|..|+.+|++++..-.....-.=..++..|.+++.+.++.++..| ..|-+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 46899999999999999999999999998554322211124678888888888777766555 44443
No 206
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.98 E-value=5.8 Score=36.77 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK 314 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~ 314 (537)
+.++..++..+..|+...+..- ...++.+...|.++++.++..|+.+|..|...+--|.. ...+..++..|.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 4667778888888876544322 23478899999999999999999999999875422211 122367888889
Q ss_pred cCCHHHHHHHHHHHHHcccC
Q 009320 315 SGSEESQEHAAGALFSLALE 334 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~ 334 (537)
+.+++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999888755
No 207
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.92 E-value=0.029 Score=43.69 Aligned_cols=47 Identities=21% Similarity=0.114 Sum_probs=22.8
Q ss_pred cccccccccccc-C---Ceec----CCCccccHHHHHHHHHc---CC-------CCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMF-D---PVVV----STGQTFDRVSVQVCREL---GF-------LPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~-d---PV~~----~~G~ty~r~~i~~~~~~---~~-------~~cp~~~~~~~ 74 (537)
+..|+||...+. + |+++ .||++|=..|+.+||.. ++ +.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 568999998765 3 5544 78999999999999964 11 14999987654
No 208
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.86 E-value=25 Score=40.45 Aligned_cols=211 Identities=18% Similarity=0.134 Sum_probs=118.6
Q ss_pred hhHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc----cCC----HHHHHHHHHHH
Q 009320 221 PEEEELSKKLRS-----ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV----SRY----SIVQTNAVASL 287 (537)
Q Consensus 221 ~~~~~Lv~~L~s-----~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----s~~----~~v~~~a~~~L 287 (537)
.+++.++..|.+ ...+.....++.|+..++. ..+|+.+.+.|+++.|+..|. ... .++.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 345667777743 2334444566667777765 789999999999999998773 333 56666666655
Q ss_pred HHhcCCCcc-HH----HHHhcC--------CHHHHHHHHccC----CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHH
Q 009320 288 VNLSLEKKN-KV----LIVRSG--------FVPLLIDVLKSG----SEESQEHAAGALFSLALEDENKMAIGVLGALQPL 350 (537)
Q Consensus 288 ~nLs~~~~~-k~----~i~~~g--------~v~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~L 350 (537)
-.|...... .. ...... -+..|+..+.+. ++.+....+++|-.|+..+..+....-.. +.+.
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F~p~ 274 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-FKPY 274 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-HHHh
Confidence 544432110 00 001111 255566665543 57888899999999998776543332111 1111
Q ss_pred HHH--hccC-CHHHHHHHHHHHHHhhc----C---hhhHHHHHhcCcHHHHHHHhcCC----------ch--------HH
Q 009320 351 MHA--LRAE-SERTRHDSALALYHLTL----I---QSNRVKLVKLNAVATLLTMVKSG----------ES--------TS 402 (537)
Q Consensus 351 v~l--L~~~-~~~~~~~A~~aL~nLs~----~---~~n~~~iv~~g~v~~Lv~lL~~~----------~~--------~~ 402 (537)
+++ +... .+.. ...+..+..++. + ..-+..+++.|++...+++|... ++ ..
T Consensus 275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 111 1100 1111 112333333332 1 24578889999999999988521 11 12
Q ss_pred HHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHh
Q 009320 403 RVLLILCNLAASNEGRSAILDANGVSILVGMLR 435 (537)
Q Consensus 403 ~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~ 435 (537)
.++..|..||.....-+.+...+++ .++.-|.
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE 385 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE 385 (802)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh
Confidence 2788888888876655555656666 3444443
No 209
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.81 E-value=0.071 Score=54.10 Aligned_cols=47 Identities=9% Similarity=-0.042 Sum_probs=41.0
Q ss_pred ccccccccccCCeecCCCccccHHHHHHHHHc-CCCCCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL-GFLPDLENGFKPDFS 76 (537)
Q Consensus 30 ~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~~ 76 (537)
+|-||-+==+|=-+=||||-.|-.|+..|... ++..||.||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999999999889999999999999999854 467899999877654
No 210
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.73 E-value=0.82 Score=38.06 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=49.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFS 330 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~ 330 (537)
-++++++..+.+++..++..|+.+|.|+++.- +..+.. ....+.|.+++...++.+|..| ..|-+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 35888889999999999999999999999743 223332 4567888888888888887665 44433
No 211
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.63 E-value=1.6 Score=40.63 Aligned_cols=108 Identities=22% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc---------CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS---------RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s---------~~~~v~~~a~~~L~nLs~ 292 (537)
.+.+++.|.+..... ..+..|+..-+.++ ..-..+.+.||+..|+.+|.. .+...+..++.+|..|..
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 467888887665543 34455554444443 445556678999999998842 355788899999999988
Q ss_pred CCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 293 EKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 293 ~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
+......+.. .+.+..|+..|.+.+..++..++.+|..++
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7777777775 789999999999999999999999998765
No 212
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.58 E-value=3.2 Score=46.17 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=64.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-c---cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-K---NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN 337 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~---~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~ 337 (537)
.+++|.|...|++.+..++++++..+..++... + .++.|. +---|+.+|++.+.++|.+|...+..++.
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak---- 954 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK---- 954 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH----
Confidence 577999999999999999999999999998742 2 344443 22467889998899999999999987753
Q ss_pred hhHHhhcCchHHHHHHhcc
Q 009320 338 KMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 338 k~~I~~~g~l~~Lv~lL~~ 356 (537)
.|+-+.++..|+.-|+.
T Consensus 955 --aIGPqdVLatLlnnLkv 971 (1172)
T KOG0213|consen 955 --AIGPQDVLATLLNNLKV 971 (1172)
T ss_pred --hcCHHHHHHHHHhcchH
Confidence 34445555555555554
No 213
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.42 E-value=9.1 Score=41.54 Aligned_cols=87 Identities=23% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHH
Q 009320 242 VIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQ 321 (537)
Q Consensus 242 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~ 321 (537)
++....+.+.+++.+.++ .|+|-..|++.-+.++-+++.++..++... ....+++ ..+..|-.+|++.....|
T Consensus 248 vr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 248 VRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcchHHHH
Confidence 334445555555544443 566667777777788888888888887522 1122222 245666677888888999
Q ss_pred HHHHHHHHHcccCc
Q 009320 322 EHAAGALFSLALED 335 (537)
Q Consensus 322 ~~Aa~~L~~Ls~~~ 335 (537)
-.|.++|-.|+...
T Consensus 321 FsA~Riln~lam~~ 334 (898)
T COG5240 321 FSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998544
No 214
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.32 E-value=25 Score=38.35 Aligned_cols=266 Identities=13% Similarity=0.083 Sum_probs=144.4
Q ss_pred HHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCC-----------hHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 226 LSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPN-----------LLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 226 Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g-----------~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
+++.| .+.+++.+..|.-.|+|--..++..++.-+... +--...+.|.+..+..-..|..+|..++.
T Consensus 44 l~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~ 123 (858)
T COG5215 44 LVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR 123 (858)
T ss_pred HHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 44445 345667777777777766544444443322111 11122334455555666666666655553
Q ss_pred CCccHHHHHhcCCHHHHH----HHHccCC-HHHHHHHHHHHHHcccCcchhhHHhhcC-ch-HHHHHHhccC-CHHHHHH
Q 009320 293 EKKNKVLIVRSGFVPLLI----DVLKSGS-EESQEHAAGALFSLALEDENKMAIGVLG-AL-QPLMHALRAE-SERTRHD 364 (537)
Q Consensus 293 ~~~~k~~i~~~g~v~~Lv----~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g-~l-~~Lv~lL~~~-~~~~~~~ 364 (537)
-+ + -.+..|-|+ .....+. ...+.++..++.+++...+....+...+ ++ .....-++++ +..++..
T Consensus 124 ~E-----l-p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLa 197 (858)
T COG5215 124 ME-----L-PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLA 197 (858)
T ss_pred hh-----C-ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHH
Confidence 11 0 013333333 3333333 4577888999999987776655555443 22 2233344544 5678889
Q ss_pred HHHHHHH-hhcChhhHHHHHhcCcHHHHHH----HhcCC--chHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhc
Q 009320 365 SALALYH-LTLIQSNRVKLVKLNAVATLLT----MVKSG--ESTSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 365 A~~aL~n-Ls~~~~n~~~iv~~g~v~~Lv~----lL~~~--~~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
|+.+|.+ |-... ..+-.++-...+++ .-+.. +++..+..+|..+...- +.-....+.-......+.+.+
T Consensus 198 aL~aL~dsl~fv~---~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks 274 (858)
T COG5215 198 ALKALMDSLMFVQ---GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS 274 (858)
T ss_pred HHHHHHHHHHHHH---HhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 43322 22233333333333 33332 35566777777665422 333333333333444557766
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCChHHHHHHH----------------HCCcHHHHHHHHHhCCH-------HHHHHHHHH
Q 009320 437 SGSDSEATRENCVAALFALGHGNLRFKGLAK----------------EARAAEVLREVEERGSQ-------RAKEKAKRI 493 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~----------------~~g~i~~L~~ll~~~s~-------~~k~~A~~l 493 (537)
.++++.-.|+.....+|...-+...... -+.++|.|+.|+...++ .....|..+
T Consensus 275 ---~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sC 351 (858)
T COG5215 275 ---QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSC 351 (858)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHH
Confidence 6888899999888788873211111111 13467888887665222 456778888
Q ss_pred HHHhhcCCCC
Q 009320 494 LEMLKGREDD 503 (537)
Q Consensus 494 L~~L~~~~~e 503 (537)
|++++....+
T Consensus 352 Lqlfaq~~gd 361 (858)
T COG5215 352 LQLFAQLKGD 361 (858)
T ss_pred HHHHHHHhhh
Confidence 8888776544
No 215
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.31 E-value=1.1 Score=41.81 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=78.5
Q ss_pred CcHHHHHHHhcCCchHHHHHHHHHHHh-cC-hhhHHHHHhCCcHHHHHHHHhccC------CCCHHHHHHHHHHHHHhhc
Q 009320 386 NAVATLLTMVKSGESTSRVLLILCNLA-AS-NEGRSAILDANGVSILVGMLRESG------SDSEATRENCVAALFALGH 457 (537)
Q Consensus 386 g~v~~Lv~lL~~~~~~~~al~~L~nLa-~~-~~~r~~i~~~g~I~~Lv~lL~~~~------~~~~~~~e~A~~~L~~L~~ 457 (537)
.-...+++.+.+.....+.+.-|...- .. ......|++.||+..|+++|.... ..+......++.+|..|+.
T Consensus 66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 455556666666554434333333222 22 256778888899999999886411 1244677889999999998
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
...+...++...+++..|...+.+.+.+++..|..+|..++
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 87777788888999999999999999999999999998765
No 216
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.11 E-value=16 Score=38.88 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=99.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccCcc----hhhHHhhcCchHHHHHHhccC-------CHHHHHHHHHHHHHhhcChh
Q 009320 309 LIDVLKSGSEESQEHAAGALFSLALEDE----NKMAIGVLGALQPLMHALRAE-------SERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 309 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~I~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~nLs~~~~ 377 (537)
+..++...+.+-|-.|.-....+..+++ +|..+.+.-+++-+-++|... +.-.+.-++..|..+|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4556665566666666666666666654 677788877788888888764 22355667778888888876
Q ss_pred hH--HHHHhcCcHHHHHHHhcC---Cc------hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHH
Q 009320 378 NR--VKLVKLNAVATLLTMVKS---GE------STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRE 446 (537)
Q Consensus 378 n~--~~iv~~g~v~~Lv~lL~~---~~------~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e 446 (537)
.. ..|+ ..||.|++++.. .+ +.+.+..+|..++..+.|...++..|+++.+.++-.. +..+ .-..
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~-~d~a 171 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGS-HDMA 171 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCc-hhHH
Confidence 43 4444 469999999863 22 5666899999999999999999999999999987665 2222 2244
Q ss_pred HHHHHHHHhh
Q 009320 447 NCVAALFALG 456 (537)
Q Consensus 447 ~A~~~L~~L~ 456 (537)
.++.++.-+.
T Consensus 172 lal~Vlll~~ 181 (698)
T KOG2611|consen 172 LALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 217
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.04 E-value=2.1 Score=42.07 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH
Q 009320 402 SRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE 480 (537)
Q Consensus 402 ~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~ 480 (537)
..|+.+|..+|- ++..|..+.+...+..++++|.. ...+.++-.++.+|..+...++.......+.+++..+..+++
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~--~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSP--SNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhcc--CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 346788888886 67888899999999999999954 367889999999999998888888889999999999999977
Q ss_pred hC--CHHHHHHHHHHHHHhhcC
Q 009320 481 RG--SQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 481 ~~--s~~~k~~A~~lL~~L~~~ 500 (537)
+. +.++|-++.+.|..+-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 54 678999999888665554
No 218
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.74 E-value=0.15 Score=37.26 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=35.4
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 77 (537)
+..|=.|...=...++++|||-.|+.|-. -....-||.|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~---~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFP---GERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccC---hhhccCCCCCCCcccCCC
Confidence 44566777777889999999999999842 223446999999887643
No 219
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=0.19 Score=51.10 Aligned_cols=48 Identities=15% Similarity=0.000 Sum_probs=35.7
Q ss_pred CCccccccccccccCCee-----c-CCCccccHHHHHHHHHcC-C-CCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVV-----V-STGQTFDRVSVQVCRELG-F-LPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~-----~-~~G~ty~r~~i~~~~~~~-~-~~cp~~~~~~~~ 75 (537)
|-.-.|.||-+.+ |+. + .|||+|.-.|+.+||+.. . +.||.|+-.+..
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4456899996665 332 3 599999999999999864 2 479999855544
No 220
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.62 E-value=4.8 Score=43.87 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=65.0
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc
Q 009320 261 TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK----NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE 336 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~----~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~ 336 (537)
..|.+|.|...|.+.+..++.+.+..+..++.... .++.|. .---|+.+|++.+.++|.+|...+.-++.
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~--- 759 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR--- 759 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh---
Confidence 36789999999999999999999999998887432 244442 22467889999999999999999877753
Q ss_pred hhhHHhhcCchHHHHHHhccC
Q 009320 337 NKMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 337 ~k~~I~~~g~l~~Lv~lL~~~ 357 (537)
.|+-+.++..|+.-|+..
T Consensus 760 ---aiGPqdvL~~LlnnLkvq 777 (975)
T COG5181 760 ---AIGPQDVLDILLNNLKVQ 777 (975)
T ss_pred ---hcCHHHHHHHHHhcchHH
Confidence 344455555666555543
No 221
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.49 E-value=4.1 Score=45.47 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=106.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHH-HHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVA-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~-~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
.++.+-.-+.+....-+..|+. +|..+....+.- +..+.+++.....+.+.+...-..|.+-+........
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvS------slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-- 85 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVS------SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-- 85 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchH------hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH--
Confidence 3444444343333344444444 555666543332 3346677777777788877777777776655433222
Q ss_pred hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHH
Q 009320 343 VLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+++..+++=..+.++.++..|+..+..+-. .-+..-...+|...+.+...-.+...++..--....+.+...
T Consensus 86 --~avnt~~kD~~d~np~iR~lAlrtm~~l~v------~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~ 157 (734)
T KOG1061|consen 86 --LAVNTFLKDCEDPNPLIRALALRTMGCLRV------DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE 157 (734)
T ss_pred --hhhhhhhccCCCCCHHHHHHHhhceeeEee------hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc
Confidence 345555555666677777777766554422 123334667788888776533332222222223445666677
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
+.|.+..|..++.+ .++.+..+|+++|..+....
T Consensus 158 ~~gl~~~L~~ll~D---~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 158 DSGLVDALKDLLSD---SNPMVVANALAALSEIHESH 191 (734)
T ss_pred ccchhHHHHHHhcC---CCchHHHHHHHHHHHHHHhC
Confidence 78889999999986 78899999999999988733
No 222
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.31 E-value=15 Score=37.42 Aligned_cols=180 Identities=21% Similarity=0.207 Sum_probs=94.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc---chhhHHhhcCch
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFSLALED---ENKMAIGVLGAL 347 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~I~~~g~l 347 (537)
.......++.++..|.++....-....+.+ .-.+..+.+.++.|..+-+..|+.++.-++..- .....+. ....
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 444566777788777766543222223322 235678888888888777777877777776541 2222333 2466
Q ss_pred HHHHHHhccCC--HHHHHHHHHHHHHhhcChhhH-HHHHh-cCcHHH--HHHHhc-CCc-----------hHHHHHHHHH
Q 009320 348 QPLMHALRAES--ERTRHDSALALYHLTLIQSNR-VKLVK-LNAVAT--LLTMVK-SGE-----------STSRVLLILC 409 (537)
Q Consensus 348 ~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n~-~~iv~-~g~v~~--Lv~lL~-~~~-----------~~~~al~~L~ 409 (537)
+.|..++.+++ ..++..++.+|.-++.....- ..+.+ ...+.. ....++ ++. +...|+..-.
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 78888887763 345555555655544321110 11110 112221 111121 111 2333443333
Q ss_pred HHhc-ChhhHH-HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 410 NLAA-SNEGRS-AILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 410 nLa~-~~~~r~-~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-|.. .+..+- ... ...++.|+.+|.+ .+..+|-.|-.+|.-|..
T Consensus 212 lLlt~~~~~~~~~~~-~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLL-EEALPALSELLDS---DDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHhcCCHHHHHHHH-HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 3332 333211 222 3568999999988 788888777766665543
No 223
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.30 E-value=0.18 Score=49.77 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=36.5
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHHcCCC--CCCCCC
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFL--PDLENG 70 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~--~cp~~~ 70 (537)
-|+||+..+.-.| ||+++|||..-+.++.+.-+.|.. .||-|.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4899999999887 999999999999999887777643 588774
No 224
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.01 E-value=1.9 Score=33.83 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCC
Q 009320 362 RHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDAN 425 (537)
Q Consensus 362 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g 425 (537)
.+.|++|+.++.+.+.....+-+.++++.++++....+ ++--|..+|.-++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 57899999999998887777778899999999987544 45558999999999999998887654
No 225
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.85 E-value=5.4 Score=45.42 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=105.8
Q ss_pred hhHHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccH
Q 009320 221 PEEEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--KKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~~~k 297 (537)
.+...+...| +...+.++..+...+.++++.-.. .....+.++.+..+..++...++..|...+.++... ...
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-
Confidence 3455667777 567778888888888888854333 666788899999999888888888888888777652 221
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc--C
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL--I 375 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~--~ 375 (537)
=......+.++.....++..++...+.....|...-.. .......+++...+++....+.+...+.-...++. +
T Consensus 312 --d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 --DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred --hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 11124567888888888888888888777777543222 22233445666666665443444443333333332 3
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCCc
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSGE 399 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~~ 399 (537)
.+....+....+++.+-.++.+..
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNA 411 (759)
T ss_pred cccccccchhhhhHHHHHHHhccc
Confidence 333444444445566655555443
No 226
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=0.2 Score=50.14 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=40.0
Q ss_pred CCCC--CccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 23 KQPP--KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 23 ~~~p--~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
.++| ++=.||||.-=--..|..||||.-|..||.+++... +.|-.|+...
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv 466 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTV 466 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEeccee
Confidence 4555 688999999888888999999999999999998763 3565565544
No 227
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.62 E-value=0.55 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
++|.+++++.+++++++..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998864
No 228
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.42 E-value=24 Score=37.66 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=97.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCC----ccHHHHHhcCCHHHHHHHHccCC-------HHHHHHHHHHHHHcccCcc
Q 009320 268 LRNLVVSRYSIVQTNAVASLVNLSLEK----KNKVLIVRSGFVPLLIDVLKSGS-------EESQEHAAGALFSLALEDE 336 (537)
Q Consensus 268 Lv~lL~s~~~~v~~~a~~~L~nLs~~~----~~k~~i~~~g~v~~Lv~lL~~~~-------~e~~~~Aa~~L~~Ls~~~~ 336 (537)
+..++...+.+-+-.|+-....+.+.+ .+|+.+.++-+.+-+=++|..++ .-.+..++.+|.-++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 344455555555666666666777643 46778888766667777776532 3356777888888888876
Q ss_pred hhhHHhhcCchHHHHHHhccC-CH------HHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc--CCc-hHHHHHH
Q 009320 337 NKMAIGVLGALQPLMHALRAE-SE------RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK--SGE-STSRVLL 406 (537)
Q Consensus 337 ~k~~I~~~g~l~~Lv~lL~~~-~~------~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~--~~~-~~~~al~ 406 (537)
....----..||.|.+++..+ ++ .....+-.+|+.++..+.....++..|+++.+.++-. ++. ....++.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 433322235688999999765 22 2567888999999999889999999999999998654 332 2333555
Q ss_pred HHHHHh
Q 009320 407 ILCNLA 412 (537)
Q Consensus 407 ~L~nLa 412 (537)
++.-+.
T Consensus 176 Vlll~~ 181 (698)
T KOG2611|consen 176 VLLLLV 181 (698)
T ss_pred HHHHHH
Confidence 554443
No 229
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=0.21 Score=52.17 Aligned_cols=51 Identities=8% Similarity=-0.088 Sum_probs=38.3
Q ss_pred CCCccccccccccc-----------------cCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLM-----------------FDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m-----------------~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+-..--|+||..-. ++=.++||-|.|-|.|+++|.+.-.-.||+||.++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45556799997532 1123459999999999999998645589999998764
No 230
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.23 E-value=0.3 Score=34.77 Aligned_cols=43 Identities=14% Similarity=-0.049 Sum_probs=21.7
Q ss_pred cccccccc--cCCee--cCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 31 CPVSGSLM--FDPVV--VSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 31 CpI~~~~m--~dPV~--~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
||+|-+-| +|=-. -+||+..||.|..+-.+.+...||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 22112 277999999998776666667899999864
No 231
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.11 E-value=14 Score=41.58 Aligned_cols=199 Identities=14% Similarity=0.144 Sum_probs=127.4
Q ss_pred HHHHHHccCCHHHHHHHHH-HHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcC
Q 009320 267 ALRNLVVSRYSIVQTNAVA-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG 345 (537)
Q Consensus 267 ~Lv~lL~s~~~~v~~~a~~-~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g 345 (537)
-|..||.+........|.. +|..++..++.. ...|.+|+-..+.+.+++...--.|..-+..+.+-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence 4667788776666666666 455556555422 34688899999999999998888888887776654333
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHH----hcCCc--hHHHHHHHHHHHhc-ChhhH
Q 009320 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTM----VKSGE--STSRVLLILCNLAA-SNEGR 418 (537)
Q Consensus 346 ~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~l----L~~~~--~~~~al~~L~nLa~-~~~~r 418 (537)
-|..+-+-|.+.++-++..|+.+|..+ |..++ +|.++-. ..+.. ++..|+-+|-.|-+ .++.+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~I----aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMI----APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhH----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 245566778888998998888888765 22222 2222222 23333 34445556656544 55666
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+.+. ..+-.+|.+ .++.+.-.|+.+.-.+|-.. ..++ .+-...|..++.+-++=.|-....+|-..+
T Consensus 179 ~qL~-----e~I~~LLaD---~splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 179 DQLE-----EVIKKLLAD---RSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred HHHH-----HHHHHHhcC---CCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 6554 455567776 78899999999999888543 2222 234566777776666666666666663333
No 232
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.85 E-value=28 Score=35.10 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=108.6
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh---------hH
Q 009320 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK---------MA 340 (537)
Q Consensus 270 ~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k---------~~ 340 (537)
..+.+.++.+++.|+.+|+-.+.-+. .++. ..++.+...+..++.+++..|+.+|+.+....... ..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 55678899999999999998887443 2222 12567788887789999999999999986432211 01
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-----hHHHHHH-HHHHHhcC
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-----STSRVLL-ILCNLAAS 414 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-----~~~~al~-~L~nLa~~ 414 (537)
......+..+.+.+.+.+++++..|+..+..|-..+.... ...++..|+-+--++. ...+++. .+-..|..
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS 186 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence 2234567778888888888999999988888655432221 1334444443332222 2223433 34444555
Q ss_pred hhhHHHHHhCCcHHHHHHHHhccCCC-CHHH---HHHHHHHHHHhhc
Q 009320 415 NEGRSAILDANGVSILVGMLRESGSD-SEAT---RENCVAALFALGH 457 (537)
Q Consensus 415 ~~~r~~i~~~g~I~~Lv~lL~~~~~~-~~~~---~e~A~~~L~~L~~ 457 (537)
....+.......++.+-.+....... ++.. -...+..+..++.
T Consensus 187 ~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 187 SPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 54444555556677777777652210 1111 2345556666655
No 233
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=33 Score=38.64 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=18.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
+..+..+|.+.+..++-.|+..|..|+.++
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 455666666666666666666666665443
No 234
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=0.36 Score=48.91 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=39.6
Q ss_pred CCCCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 19 NSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 19 ~~~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
...+.+.|..-.|-||.+=.++-|-+||||..| |+.-... ...||+|++..
T Consensus 296 ~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 296 NGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred cCcccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 345677788889999999999999999999998 6643221 23499998754
No 235
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.95 E-value=11 Score=34.86 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=54.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChH-HHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLL-SALRNLVVSRYSIVQTNAVASLVNLSLE 293 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i-~~Lv~lL~s~~~~v~~~a~~~L~nLs~~ 293 (537)
..+.+...|++.++.++..|+..|..|...+ ++--.|-+ ..++.++.+++++++..|...+..+...
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999998543 22223333 6777788899999999999999998875
No 236
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.84 E-value=17 Score=37.53 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=135.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHH-----Hhh-c-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRV-----SIC-T-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK 295 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~-----~i~-~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~ 295 (537)
...|+..|..-+.+.+..++....++.+.....+. .+. . ..++..|+.--. ++++.-.+-..|.....++.
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHH
Confidence 35677788888899999888888888876644432 232 2 445555555433 55566667778888888888
Q ss_pred cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-ch-hhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-EN-KMAIGV--LGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~-k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
....+.....+..+......++-++...|..++..+-..+ .. ...+.. ...+.....+|.+++--+++.++..|..
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e 235 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE 235 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence 8888888888899999999999999888888888854433 22 222222 3466778889999999999999999999
Q ss_pred hhcChhhHHHHHh----cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh
Q 009320 372 LTLIQSNRVKLVK----LNAVATLLTMVKSGE--STSRVLLILCNLAASN 415 (537)
Q Consensus 372 Ls~~~~n~~~iv~----~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~ 415 (537)
|-..+.|-..|.+ ..-+..++.+|++.. ++-.|.-+..-....|
T Consensus 236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 236 LLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999988776654 457888888888654 5666777776665544
No 237
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=0.43 Score=48.59 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=44.9
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
.-.|.+++..|.|||-+..|-.||-..|--|++.- ..-|.+++++..++|++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCcccccccee
Confidence 35799999999999999999999999999999872 34455999998888876
No 238
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.44 E-value=50 Score=37.26 Aligned_cols=55 Identities=27% Similarity=0.245 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK 294 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~ 294 (537)
...|..-++.|+..+..++..+ ...|..+..+|.+.++.+.-+|+.+|..|+.++
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 3444445555555554433322 234666677776666666666666666665544
No 239
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=0.18 Score=36.46 Aligned_cols=45 Identities=9% Similarity=-0.149 Sum_probs=35.9
Q ss_pred cccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
-.|.||.+--.|-|+--|||- .|-.|=.+.+...+..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 469999999999999999984 577776665555677999998765
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.02 E-value=11 Score=44.33 Aligned_cols=223 Identities=15% Similarity=0.113 Sum_probs=126.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhh---ccChHHHHHhhcCChHHHHHHHHccCC-HHHHHHHHHHHHHhcC------
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLT---RTNEELRVSICTPNLLSALRNLVVSRY-SIVQTNAVASLVNLSL------ 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~---~~~~~~r~~i~~~g~i~~Lv~lL~s~~-~~v~~~a~~~L~nLs~------ 292 (537)
++-++.++.....++|..|+.+|..+- +.-+..-..|.-.=++|-|-.++.+.+ ..++..-+..|..|+.
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl 543 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL 543 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH
Confidence 355666777788899999999888664 222222223333335677777776633 3333333334433331
Q ss_pred ------------CCccHHHHHh----------cCCHHHHH-HHHccCCHHHHHHHHHHHHHcccCcchhhHHhh----cC
Q 009320 293 ------------EKKNKVLIVR----------SGFVPLLI-DVLKSGSEESQEHAAGALFSLALEDENKMAIGV----LG 345 (537)
Q Consensus 293 ------------~~~~k~~i~~----------~g~v~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~----~g 345 (537)
++.|-+...+ ...|..++ .+|....+-+|..-...|.-|+.. .++ .=
T Consensus 544 e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~ 617 (1431)
T KOG1240|consen 544 ELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDV 617 (1431)
T ss_pred HHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccc
Confidence 1111100000 01233333 344444445555555555555421 221 22
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHh
Q 009320 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILD 423 (537)
Q Consensus 346 ~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~ 423 (537)
+++.|+..|++.+...+..=...|..+|..- ...-++.+.+|.|.+-|.|++ +..+|+..|..|+...--+...+
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V--G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v- 694 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFV--GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV- 694 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEE--eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-
Confidence 5788888898877666555444444444321 122267788999999998765 67889999999887654333222
Q ss_pred CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 424 ANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 424 ~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-..++.+..+|-. .+..+|..++.++.....
T Consensus 695 ~~i~~~v~PlL~h---PN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 695 KDILQDVLPLLCH---PNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHhhhhheeC---chHHHHHHHHHHHHHHHh
Confidence 1344555556655 678999999999998876
No 241
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.00 E-value=16 Score=41.74 Aligned_cols=219 Identities=11% Similarity=0.071 Sum_probs=133.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHh---hcCchH
Q 009320 274 SRYSIVQTNAVASLVNLSLEK-KNKVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIG---VLGALQ 348 (537)
Q Consensus 274 s~~~~v~~~a~~~L~nLs~~~-~~k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~---~~g~l~ 348 (537)
+..+.+.-.+..++...+... -+.. +.. -.+...+..+. +..+-++..|+.+++..+ +..+. ..+++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHH
Confidence 445665556666666555421 2221 111 12333344333 334557777788777766 22222 357788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc----CCchHHHHHHHHHHHhcChhhHHHHHhC
Q 009320 349 PLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK----SGESTSRVLLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 349 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~----~~~~~~~al~~L~nLa~~~~~r~~i~~~ 424 (537)
.|+.+....+.++......+|...+..+.-.....+.-+.|.++.++. ++-+...+-.++..|+...++...+. .
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-E 612 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-H
Confidence 888888877777777777888888876655555556667777777653 33345555566666655333332332 4
Q ss_pred CcHHHHHHHHhccC-CCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHHH-HHhCCHHHHHHHHHHHHHhhcCC
Q 009320 425 NGVSILVGMLRESG-SDSEATRENCVAALFALGHGN-LRFKGLAKEARAAEVLREV-EERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 425 g~I~~Lv~lL~~~~-~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~l-l~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..||.++.+|.... .........++-+|.-+.++. +..-+.+. .-+++.+.+. +++++...-+.+.++|+.+-...
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 56899999997621 113455666777777677642 23333333 2467788876 77788888999999998887763
No 242
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.59 E-value=1 Score=28.74 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
+|.+++++.++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999988753
No 243
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.48 E-value=0.33 Score=49.28 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=43.2
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
.+.|.|++++|.| |++.|.||+|-..+|+.|-...+-.||.+++.++..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 4789999999987 999999999999999999877667899999888764
No 244
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.25 E-value=32 Score=40.56 Aligned_cols=223 Identities=16% Similarity=0.140 Sum_probs=121.0
Q ss_pred HHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CC-ccHHHH
Q 009320 226 LSKKL-RSADIALQEEGVIALRRLTRTNEELRVSIC--TPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EK-KNKVLI 300 (537)
Q Consensus 226 Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~-~~k~~i 300 (537)
++... ++.+...|.++.+.|..++.. +....... -..+...|.+-+++...-++...+.+|..|-. ++ ++...+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444 456889999999999999865 21111111 11223344444455566677778887776654 33 333333
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc----CcchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHhhc
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL----EDENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHLTL 374 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~ 374 (537)
.. .|+-++-.++..+...|.+|-.+|..+.. .++.... ....++..+.++..+ .......+.. |..+..
T Consensus 737 ~k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~ 811 (1176)
T KOG1248|consen 737 PK--LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASD-IVAITH 811 (1176)
T ss_pred HH--HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHH
Confidence 22 24444444477788899999999988873 1111100 123567777777665 3333333322 332222
Q ss_pred ChhhHHHHHhcCcHHHHHHHh----cCC--chHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMV----KSG--ESTSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL----~~~--~~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
.-..-..+.+.+.++.+++.+ .+. ++...|++.+..++. .++-.-.-.....++.+..+++. ....++-.
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d---~k~~~r~K 888 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD---HKIKVRKK 888 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh---hhHHHHHH
Confidence 222233344455555555544 333 345557777777665 44433322223456677776665 56677777
Q ss_pred HHHHHHHhhc
Q 009320 448 CVAALFALGH 457 (537)
Q Consensus 448 A~~~L~~L~~ 457 (537)
.-..|-.|++
T Consensus 889 vr~LlekLir 898 (1176)
T KOG1248|consen 889 VRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 245
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=86.20 E-value=25 Score=36.67 Aligned_cols=238 Identities=17% Similarity=0.148 Sum_probs=125.0
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHH-HhcCCCccH
Q 009320 221 PEEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLV-NLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~-nLs~~~~~k 297 (537)
.+++-++..|. +.....+..++-.|..-+. ++..|..+...|.+..+++.+... +..+..-+..++. -++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 34667888885 4555667777777777775 578899999999999999998543 3324444444444 445455445
Q ss_pred HHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhcc------C---CHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRA------E---SERTRHDS 365 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~------~---~~~~~~~A 365 (537)
..+...+.+..+++++..... +.....- ...+..+. ....+..+.+++.. . ....+--|
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 444456666666777761100 0000000 00000000 01111111122211 0 11122333
Q ss_pred HHHHHHhh------------c---ChhhHHHHHhcCcHHHHHHHhcC----C--------c------hHHHHHHHHHHHh
Q 009320 366 ALALYHLT------------L---IQSNRVKLVKLNAVATLLTMVKS----G--------E------STSRVLLILCNLA 412 (537)
Q Consensus 366 ~~aL~nLs------------~---~~~n~~~iv~~g~v~~Lv~lL~~----~--------~------~~~~al~~L~nLa 412 (537)
+.+|-.++ . .+--+..+...|++..+++++.+ . . ..++++.+|.+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 33444432 0 12235667778899999998751 1 0 2345889999887
Q ss_pred cCh-hhHHHHHhC--Cc-HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 413 ASN-EGRSAILDA--NG-VSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 413 ~~~-~~r~~i~~~--g~-I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
... ++...+... +. +..+..++.............++++|.||..+++........
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s 310 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS 310 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh
Confidence 644 566665532 22 333333443311123444678899999999877544443333
No 246
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.42 E-value=0.33 Score=53.54 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=48.7
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHH--HHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVC--RELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~--~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
.++.||||.....+|+.+.|-|.||+.|+... +..+...||+|+.........--..-.+++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 46789999999999999999999999999874 344445699998665544443345556666654
No 247
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=38 Score=41.13 Aligned_cols=180 Identities=16% Similarity=0.049 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHH
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSIC--TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLID 311 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~ 311 (537)
.+..+.-|+.-+..++... +..+. -.-+||.|.+.-.+++..+|..+..+=..|..+..+...-.-..+++-|+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 3344444555555554322 22221 134588888887889999998777665556554433222222456777777
Q ss_pred HHccCCHHHHHHHHHHHHHcccCcchhhHHhh-cCchHHHHHHhccCCHHHHHH---HHHHHHHhhc---Chh--hHHHH
Q 009320 312 VLKSGSEESQEHAAGALFSLALEDENKMAIGV-LGALQPLMHALRAESERTRHD---SALALYHLTL---IQS--NRVKL 382 (537)
Q Consensus 312 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~-~g~l~~Lv~lL~~~~~~~~~~---A~~aL~nLs~---~~~--n~~~i 382 (537)
-|.+....+|+.+|.+|..|-...++-...-. ......+.+.+.+-.+.+++. ++.+|..|+. ... .+.+-
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 77777889999999999999877654333322 345566666666545555554 4555555553 111 12222
Q ss_pred HhcCcHHHHHH--HhcCC-chHHHHHHHHHHHhcChh
Q 009320 383 VKLNAVATLLT--MVKSG-ESTSRVLLILCNLAASNE 416 (537)
Q Consensus 383 v~~g~v~~Lv~--lL~~~-~~~~~al~~L~nLa~~~~ 416 (537)
+-+.++|.|++ ++..- +++.-++.+|..|+....
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 22334555543 22111 234448888888887653
No 248
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=24 Score=40.16 Aligned_cols=214 Identities=17% Similarity=0.105 Sum_probs=121.3
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHH
Q 009320 272 VVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLM 351 (537)
Q Consensus 272 L~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv 351 (537)
+.++-+.++..++..|..+....+.+..+...+++...+..|++.++=+--+|+..+..|+.. ....+++.|.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~ 808 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLS 808 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHH
Confidence 345556677788888888877555566666778888888999888877767777766565533 2234566666
Q ss_pred HH-hccC---CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhh--HHHHH
Q 009320 352 HA-LRAE---SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEG--RSAIL 422 (537)
Q Consensus 352 ~l-L~~~---~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~--r~~i~ 422 (537)
+- .+.. .+..+...-.|+.++... .+-..+ ..+-.+...+..+++++ .+..+++++.+||.--.+ -+.+.
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~-y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK-YKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 53 3222 122333333555554432 111111 11245556666666554 355578888888864332 22222
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHH--HCCcHHHHHHHHH-hCCHHHHHHHHHHHHHh
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR-FKGLAK--EARAAEVLREVEE-RGSQRAKEKAKRILEML 497 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~--~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L 497 (537)
.++..++.+... .++.-+|..|+..+..+-.+... ...+.. .-.....+..... +.++.+|-.|...|..+
T Consensus 888 --ev~~~Il~l~~~--d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 888 --EVLQLILSLETT--DGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred --HHHHHHHHHHcc--CCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 345566666655 37888999999999988774322 111111 1123334444433 34455666666666443
No 249
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=84.70 E-value=23 Score=37.15 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=75.3
Q ss_pred HHh-cCCHHHHHHHHccCC---HHHHHHHHHHHHHcccCcchhhH-HhhcCchHHHHHHhc-cC---CHHHHHHHHHHHH
Q 009320 300 IVR-SGFVPLLIDVLKSGS---EESQEHAAGALFSLALEDENKMA-IGVLGALQPLMHALR-AE---SERTRHDSALALY 370 (537)
Q Consensus 300 i~~-~g~v~~Lv~lL~~~~---~e~~~~Aa~~L~~Ls~~~~~k~~-I~~~g~l~~Lv~lL~-~~---~~~~~~~A~~aL~ 370 (537)
+++ ...+..|-.++.+.. +.+-..|+.++..+..++...-. |.+.|.++.+++.+. .+ +.++...--.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 444566666776643 56778888899888877764444 557899999999998 54 4566666667888
Q ss_pred HhhcChhhHHHHHhcCcHHHHHHHhcCC
Q 009320 371 HLTLIQSNRVKLVKLNAVATLLTMVKSG 398 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g~v~~Lv~lL~~~ 398 (537)
.||.+......+.+.+.++.+++++.+.
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 8999999999999999999999988643
No 250
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.53 E-value=9.2 Score=37.84 Aligned_cols=186 Identities=22% Similarity=0.147 Sum_probs=108.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhc--CchHHHHHHhcc----CCHHHHHHHHHHHHHhhcChhhHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVL--GALQPLMHALRA----ESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~--g~l~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
..+.+++..-..+-+-.+..+++-+...+..-..+... +....+..++.. ..+..+.-++.++.|+-.+...+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 34444554444444556666666666655544444322 123444444433 356778889999999999888888
Q ss_pred HHHhcC--cHHHHHHHhcCC------chHHHHHHHHHHHhcCh-hhHH-HHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 381 KLVKLN--AVATLLTMVKSG------ESTSRVLLILCNLAASN-EGRS-AILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 381 ~iv~~g--~v~~Lv~lL~~~------~~~~~al~~L~nLa~~~-~~r~-~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
.+.+.. .+...+..+... ..+..++..+.|++..- ..+. .=.....+..+++.+.. ...++++.-.++.
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~-~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSR-EESDEEALYRLLV 224 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHC-CHTSHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-ccCCHHHHHHHHH
Confidence 888643 344443333322 13333678888886522 1110 00001123455553332 1258899999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHH-HhCCHHHHHHHHHH
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVE-ERGSQRAKEKAKRI 493 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll-~~~s~~~k~~A~~l 493 (537)
+|.+|+..+......+...|+...+.... ....+++++-+.++
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 99999987776667766566666666664 45578888887654
No 251
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.53 E-value=0.67 Score=46.29 Aligned_cols=51 Identities=14% Similarity=-0.030 Sum_probs=36.0
Q ss_pred CCccccccccccccC--Ce--ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD--PV--VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 26 p~~~~CpI~~~~m~d--PV--~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 77 (537)
.+++ ||+|.+-|.- -= -.+||+..||.|.-.--+.-++.||.||....+..
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3455 9999998852 11 14889999999964433444568999998877653
No 252
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=83.96 E-value=75 Score=37.32 Aligned_cols=252 Identities=16% Similarity=0.143 Sum_probs=136.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.|++.|++.+..++.-|++-+..++...+..-. ..+|.-.++++.- ++...-..++.+|..|+.-.-......
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La----d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA----DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH----HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 35566666778889999999999999877662221 1234444454432 234555688888888886332221111
Q ss_pred hcCCHHHHHHHHcc--------CCHHHHHHHHHHHHHcccCcchh--hHHhhcCchH-HHHHHhccCCHHHHHHHHHHHH
Q 009320 302 RSGFVPLLIDVLKS--------GSEESQEHAAGALFSLALEDENK--MAIGVLGALQ-PLMHALRAESERTRHDSALALY 370 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~--------~~~e~~~~Aa~~L~~Ls~~~~~k--~~I~~~g~l~-~Lv~lL~~~~~~~~~~A~~aL~ 370 (537)
+ .++|.+++-|.- ....+|..|+-+++.++...... ..+.. .... .|...+.+..-..++.|.+|+.
T Consensus 419 ~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 419 E-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred H-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 1 346666665532 23568999999999997554321 11111 1122 2233455556678888888886
Q ss_pred HhhcChhhHHHHHhcCcHHHHHHHhcCCc-----hHHHHHHHHH-HHhcChhhHHHHHhCCcHHHHHH-HHhccCCCCHH
Q 009320 371 HLTLIQSNRVKLVKLNAVATLLTMVKSGE-----STSRVLLILC-NLAASNEGRSAILDANGVSILVG-MLRESGSDSEA 443 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-----~~~~al~~L~-nLa~~~~~r~~i~~~g~I~~Lv~-lL~~~~~~~~~ 443 (537)
.... +.|-+|.=+.++..-+ .+.++-..|+ .++..+..+.-+.+ .|+. -+.. .+..
T Consensus 497 E~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~H---Wd~~ 559 (1133)
T KOG1943|consen 497 ENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCH---WDVK 559 (1133)
T ss_pred HHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhccccc---ccHH
Confidence 5533 2233322222222111 1222222221 12223333333321 2211 1333 6899
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHH----HHHHHHHHHhhcCC
Q 009320 444 TRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAK----EKAKRILEMLKGRE 501 (537)
Q Consensus 444 ~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k----~~A~~lL~~L~~~~ 501 (537)
+++.+..+|..|+...++. .....++.|+......+...+ -.+.+++..+....
T Consensus 560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 9999999999998755432 234567777776666665544 34555555555554
No 253
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.84 E-value=5.2 Score=44.86 Aligned_cols=155 Identities=23% Similarity=0.226 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHh-cCCHHHHHHHHcc
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN-KVLIVR-SGFVPLLIDVLKS 315 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~-k~~i~~-~g~v~~Lv~lL~~ 315 (537)
..+++.+++||+..+...|+.+...-+++.+-.++..+++..|..++..+.||..++.. ...+++ ...++.....+..
T Consensus 559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence 45688889999988888888888777777777777888999999999999999998754 445555 5667666666666
Q ss_pred CCHHHHHHHHHHHHHcccCcchhhH-Hh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHH
Q 009320 316 GSEESQEHAAGALFSLALEDENKMA-IG-VLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLL 392 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~~~~k~~-I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv 392 (537)
........+++++..++....+... +. .......++.++.+.+..++...+..+.|+.. ..+-...+.....++.+.
T Consensus 639 ~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 639 ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 5566666777777766655543332 33 35677788889998888888888777776433 223334444444444443
No 254
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.04 E-value=50 Score=33.93 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc-cChHHHHHh-hcCC-hHHHHHHHHccC-----C--------HHHHHHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTR-TNEELRVSI-CTPN-LLSALRNLVVSR-----Y--------SIVQTNAVAS 286 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~-~~~~~r~~i-~~~g-~i~~Lv~lL~s~-----~--------~~v~~~a~~~ 286 (537)
.+.+-+.|.+.....+..+++.|..+.. .+......+ ..-+ -.+.|.+++... . +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 4667788888888888899999999987 554443333 3222 234455555211 1 2778888886
Q ss_pred HHHhcC--CCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHH-cccCc----chhhHHhhcCchHHHHHHhccCC
Q 009320 287 LVNLSL--EKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFS-LALED----ENKMAIGVLGALQPLMHALRAES 358 (537)
Q Consensus 287 L~nLs~--~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~----~~k~~I~~~g~l~~Lv~lL~~~~ 358 (537)
+..+-. +...+..+.+ .+.+..+.+-|...+.++......+|.. +..+. ..|..+.....+..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 665544 3456777775 5678888998988889998888888885 33333 35566667778999999877665
Q ss_pred H----HHHHHHHHHHHHhhcChhhH
Q 009320 359 E----RTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 359 ~----~~~~~A~~aL~nLs~~~~n~ 379 (537)
+ .+...+-..|..+|.++.+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 5 67777778888888765443
No 255
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.67 E-value=9 Score=38.49 Aligned_cols=139 Identities=21% Similarity=0.211 Sum_probs=91.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.+...+..|.+++++....++..|+.|+...++...... .-+|..+++-++.....|...|+.++..+...-.++..-
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356788889999999999999999999865543322222 234666777777777788888998888776533222222
Q ss_pred hcCCHHHHHH-HHcc---CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 302 RSGFVPLLID-VLKS---GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 302 ~~g~v~~Lv~-lL~~---~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
-+..++. +|.. .+.-+++.|-.+|..+...-.. .-+++.|...+...++.++..++....+
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 2333333 3333 3456788888888777544322 2356677777887788888777765544
No 256
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=1.4 Score=45.45 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=27.4
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHH
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRE 60 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~ 60 (537)
-|.|.||.+-..- =+.+||+|.|||+|+..++.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4889999987754 45689999999999999764
No 257
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.50 E-value=39 Score=33.36 Aligned_cols=191 Identities=21% Similarity=0.217 Sum_probs=111.4
Q ss_pred hHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-H-
Q 009320 222 EEEELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN-K- 297 (537)
Q Consensus 222 ~~~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~-k- 297 (537)
.++.|+..| .+..+.++..|.++|..+.. ...++.|-+..+++...+.+.+..+|..+-..+.. +
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 357788888 35677778889998888762 23467777777566666777665566655431110 1
Q ss_pred ---HHHH--------hcCCHHHHHHHHccCC-HHH-HHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHH
Q 009320 298 ---VLIV--------RSGFVPLLIDVLKSGS-EES-QEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHD 364 (537)
Q Consensus 298 ---~~i~--------~~g~v~~Lv~lL~~~~-~e~-~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~ 364 (537)
.... ..+-|..|-..|...+ +-. |..|.-.|+++ +...+|..|++-+..++.-.+..
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFRHE 206 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHHHH
Confidence 0111 1122444443333332 222 22333333332 22335667777777766666777
Q ss_pred HHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc----hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCC
Q 009320 365 SALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE----STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSD 440 (537)
Q Consensus 365 A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~----~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~ 440 (537)
++.++..| .+.-+|+.|.+.|.+.. ++..|+.+|..++ +..+++.|.+.+.. .
T Consensus 207 vAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D---~ 263 (289)
T KOG0567|consen 207 VAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGD---E 263 (289)
T ss_pred HHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCC---c
Confidence 77676544 44457888888886432 4555777776543 45667888888876 6
Q ss_pred CHHHHHHHHHHHHHhh
Q 009320 441 SEATRENCVAALFALG 456 (537)
Q Consensus 441 ~~~~~e~A~~~L~~L~ 456 (537)
++-+++.|..+|--+-
T Consensus 264 ~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777765443
No 258
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.31 E-value=78 Score=34.20 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=124.5
Q ss_pred hhHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccH
Q 009320 221 PEEEELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
++++.+++-| .+...+.|..+.+.|..+.+.....- .+.. ..+...+. ...++.-..-+.+|..|+.+..+-
T Consensus 27 ~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi 101 (464)
T PF11864_consen 27 EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-GLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI 101 (464)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc
Confidence 3466777776 34566778888888888876543210 0111 11222222 233333445566677777654443
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcc----cCcc-hhhHH-hhcCchHHH----HHHhccC----CHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA----LEDE-NKMAI-GVLGALQPL----MHALRAE----SERTRH 363 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls----~~~~-~k~~I-~~~g~l~~L----v~lL~~~----~~~~~~ 363 (537)
...+.+..+.|...|..--. ++..-...+ .... +...+ .+.+.+..| +.+++-+ ++....
T Consensus 102 -~~~~~~i~~~L~~wl~~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~ 175 (464)
T PF11864_consen 102 -DFFEYEIGPFLLSWLEPSYQ-----AARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEIS 175 (464)
T ss_pred -hhcccchHHHHHHHHHHHHH-----HHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 23566677777776642110 011111111 0000 00000 012222222 3333222 233333
Q ss_pred HHHHHHHHhhcChhhH----------HHHHhcC-----cHHHHHHHh----cCCchHHHHHHHHHHHhcChhhHHHHHhC
Q 009320 364 DSALALYHLTLIQSNR----------VKLVKLN-----AVATLLTMV----KSGESTSRVLLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 364 ~A~~aL~nLs~~~~n~----------~~iv~~g-----~v~~Lv~lL----~~~~~~~~al~~L~nLa~~~~~r~~i~~~ 424 (537)
..+..++.+|....+. ..++..| .++.++..| ...+..+.+-.++.||+...-+...
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~---- 251 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA---- 251 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH----
Confidence 3333344443321111 1112222 222233333 2234455567777777776544333
Q ss_pred CcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHC--CcHHHHHHHHHhCCHHHHHHHHHHH-HH
Q 009320 425 NGVSILVGMLRES---GSDSEATRENCVAALFALGHGN--LRFKGLAKEA--RAAEVLREVEERGSQRAKEKAKRIL-EM 496 (537)
Q Consensus 425 g~I~~Lv~lL~~~---~~~~~~~~e~A~~~L~~L~~~~--~~~~~~i~~~--g~i~~L~~ll~~~s~~~k~~A~~lL-~~ 496 (537)
+..|..+|... ...+..+..-|+..|..+..+. .+.-. +.-. -+++.|...++.+++.+--....++ +.
T Consensus 252 --i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 252 --IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred --HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce-ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 45788888321 1124455567777777777654 22211 1111 2566677767767666554444444 33
Q ss_pred h-hcCCCCCcchhhhhhh
Q 009320 497 L-KGREDDDEDVDWEGVL 513 (537)
Q Consensus 497 L-~~~~~e~~~~d~~~v~ 513 (537)
+ .+...+....+|..++
T Consensus 329 l~~~~~~~l~~~~W~~~~ 346 (464)
T PF11864_consen 329 LDGKYGRELSEEDWDIIL 346 (464)
T ss_pred HhHhhhhhhcccCchHHH
Confidence 3 2332333455675443
No 259
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=1.1 Score=45.21 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=49.3
Q ss_pred cccccccccccC------CeecCCCccccHHHHHHHHHcCCCCCCCCCCCC--C---CCCCcccHHHHHHHHHH
Q 009320 29 FLCPVSGSLMFD------PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP--D---FSTVIPNLAMKQTILNW 91 (537)
Q Consensus 29 ~~CpI~~~~m~d------PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~--~---~~~l~pn~~l~~~i~~~ 91 (537)
+.|-||.+-|.. |=++.||||+|-.|+......+.-.||.||.+. . .+.+..|+++-+.|+..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 457777776653 677889999999999888777766789999873 2 24688899998888876
No 260
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=81.95 E-value=84 Score=34.48 Aligned_cols=253 Identities=13% Similarity=0.104 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhhcCChH--HHHHHHHc-cCCHHHHHHHHHHHHH-hcC------CCccHHHHHhc
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSICTPNLL--SALRNLVV-SRYSIVQTNAVASLVN-LSL------EKKNKVLIVRS 303 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i--~~Lv~lL~-s~~~~v~~~a~~~L~n-Ls~------~~~~k~~i~~~ 303 (537)
....+.+++..+...+... .....+...+.+ ......++ ..+..++-.|+.+|.+ |-. .+.++..+
T Consensus 147 p~~~k~~sl~~~gy~ces~-~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~--- 222 (858)
T COG5215 147 PVSGKCESLGICGYHCESE-APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF--- 222 (858)
T ss_pred chHhHHHHHHHHHHHhhcc-CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh---
Confidence 3345666777777776432 222333333332 22333333 3466788888888876 322 12333333
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-------
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI------- 375 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~------- 375 (537)
+...+..-..++.+++..|.+.|..+.... +.-..+.+..........+++.++++...|...-..+|..
T Consensus 223 --mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e 300 (858)
T COG5215 223 --MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEME 300 (858)
T ss_pred --heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334455666678889988888887765332 2222333333344445667777888777776544344421
Q ss_pred ----h----hhHHHH--HhcCcHHHHHHHhcC------Cc-h-HHH----HHHHHHHHhcChhhHHHHHhCCcHHHHHHH
Q 009320 376 ----Q----SNRVKL--VKLNAVATLLTMVKS------GE-S-TSR----VLLILCNLAASNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 376 ----~----~n~~~i--v~~g~v~~Lv~lL~~------~~-~-~~~----al~~L~nLa~~~~~r~~i~~~g~I~~Lv~l 433 (537)
+ .|..-. .-++++|.|+.+|.. ++ + ... |+.....++.+ .|++. +...+-.-
T Consensus 301 ~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-----~i~~p-Vl~FvEqn 374 (858)
T COG5215 301 DKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-----KIMRP-VLGFVEQN 374 (858)
T ss_pred HhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-----HhHHH-HHHHHHHh
Confidence 1 111111 124689999999952 11 1 122 33333333332 22211 12222223
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 434 LRESGSDSEATRENCVAALFALGHGNLR-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 434 L~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
+++ .+..-+|.|+.++..+..++.. +...++ ..+++.+..++.+..--+|..+++++-.++++-+
T Consensus 375 i~~---~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 375 IRS---ESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred ccC---chhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 444 6778899999999999886533 333333 4678888888887788899999999988887643
No 261
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=81.93 E-value=1.8 Score=45.64 Aligned_cols=149 Identities=18% Similarity=0.102 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcc----ChHHHHHhhcCC--hHHHHHHHH---ccCCHHHHHHHHHHHHHhcCC-
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRT----NEELRVSICTPN--LLSALRNLV---VSRYSIVQTNAVASLVNLSLE- 293 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~----~~~~r~~i~~~g--~i~~Lv~lL---~s~~~~v~~~a~~~L~nLs~~- 293 (537)
..+...|.+.....|++|++.+.+++.- -+..+..-...- .+..++..- ......|..+++.+|.|+...
T Consensus 436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 3455566666788899999999988731 122121211111 122222221 124567899999999998752
Q ss_pred C---cc-HHHHHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhccC-CHHHHHHH
Q 009320 294 K---KN-KVLIVRSGFVPLLI-DVLKSGSEESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRAE-SERTRHDS 365 (537)
Q Consensus 294 ~---~~-k~~i~~~g~v~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~~-~~~~~~~A 365 (537)
+ +. -..++ .+.+..++ ..+..+...++-+||.+|.||-.++..+-+-. ...+++.|..++.+. +-+++..|
T Consensus 516 q~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 516 QPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 1 11 11222 23333333 34455678899999999999998876654444 245788999998875 56788888
Q ss_pred HHHHHHhh
Q 009320 366 ALALYHLT 373 (537)
Q Consensus 366 ~~aL~nLs 373 (537)
+.+|.--.
T Consensus 595 A~aL~vp~ 602 (728)
T KOG4535|consen 595 AAALSVPG 602 (728)
T ss_pred hhhhcCCC
Confidence 88876544
No 262
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.83 E-value=22 Score=39.07 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+..++.+...++..++..|++.|-.+++++++.... ++..|+.+|.++++.....+-.+|..|-..+ .
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~------ 128 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P------ 128 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH--H------
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c------
Confidence 466777778899999999999999999987665544 3788999999887655555555555544311 1
Q ss_pred cCCHHHHHHHHc---cCCHHHHHHHHHHHHH
Q 009320 303 SGFVPLLIDVLK---SGSEESQEHAAGALFS 330 (537)
Q Consensus 303 ~g~v~~Lv~lL~---~~~~e~~~~Aa~~L~~ 330 (537)
.+.+..|+.-+. .++..+|+.+...|..
T Consensus 129 k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 129 KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 123344444443 5667778887777743
No 263
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.92 E-value=1.1e+02 Score=35.67 Aligned_cols=234 Identities=15% Similarity=0.101 Sum_probs=125.3
Q ss_pred CChHHHHHHHHc------c--CCHHHHHHHHHHHHHhcC---CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009320 262 PNLLSALRNLVV------S--RYSIVQTNAVASLVNLSL---EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS 330 (537)
Q Consensus 262 ~g~i~~Lv~lL~------s--~~~~v~~~a~~~L~nLs~---~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~ 330 (537)
.+.++.++..|. . .++.-.+.|+.++.+|+. .+.--+..++.=.++-++-.++++..-+|..||+++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 456777777775 2 245566777777777763 11122233333334444556677777889999999999
Q ss_pred cccCc-chhhHHhhcCchHHHHHHhc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhc---CcHHHHHHHhcCCch--HHH
Q 009320 331 LALED-ENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLTLIQSNRVKLVKL---NAVATLLTMVKSGES--TSR 403 (537)
Q Consensus 331 Ls~~~-~~k~~I~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---g~v~~Lv~lL~~~~~--~~~ 403 (537)
++..+ .+.... ..++......|. +..-.++..|+-||..+-++.+....-+++ +.++.|+.+.++.+. ...
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 98432 222222 235566667776 556678999999999877655433333333 344445555443321 111
Q ss_pred HHHHHHHHhcChhhHH----HHHhCCcHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhc------CChHHHHHHHHCC
Q 009320 404 VLLILCNLAASNEGRS----AILDANGVSILVGMLRE---SGSDSEATRENCVAALFALGH------GNLRFKGLAKEAR 470 (537)
Q Consensus 404 al~~L~nLa~~~~~r~----~i~~~g~I~~Lv~lL~~---~~~~~~~~~e~A~~~L~~L~~------~~~~~~~~i~~~g 470 (537)
++..+ +|..++.-. .+. .+......+++.. ...++++-.-.|.++|..+.. ..+..-+.+ +.-
T Consensus 567 vme~i--V~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l-e~~ 642 (1010)
T KOG1991|consen 567 VMEKI--VCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL-EPI 642 (1010)
T ss_pred HHHHH--HHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 22221 122222211 122 2334556666663 112234445566666666554 112122221 233
Q ss_pred cHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 471 AAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 471 ~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
+.+.+-.++.+.-.++-+.+..++..+.-..
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 4445555566666677777777776665443
No 264
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=80.44 E-value=1.2 Score=45.91 Aligned_cols=35 Identities=14% Similarity=-0.106 Sum_probs=25.8
Q ss_pred ecCCCccccH-----HHHHHHHHc------------CCCCCCCCCCCCCCCC
Q 009320 43 VVSTGQTFDR-----VSVQVCREL------------GFLPDLENGFKPDFST 77 (537)
Q Consensus 43 ~~~~G~ty~r-----~~i~~~~~~------------~~~~cp~~~~~~~~~~ 77 (537)
.-+|+.-||| +|+.+||.. |+.|||+||..+.-.+
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 4478888876 788999943 3348999999886543
No 265
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.29 E-value=5 Score=38.40 Aligned_cols=101 Identities=23% Similarity=0.190 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHH
Q 009320 401 TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES--GSDSEATRENCVAALFALGHGN-LRFKGLAKEARAAEVLRE 477 (537)
Q Consensus 401 ~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~--~~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ 477 (537)
...++.+|..+++.|+.|..++++..--.|-..|... ...-+..+-.+++++..|..++ ..+...+....++|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4558889999999999999999887644444555431 1234667888999999999854 456666778899999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 478 VEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 478 ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
++..+++--|--|..+++.+-.+.
T Consensus 197 Ime~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999999997776653
No 266
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.17 E-value=34 Score=36.31 Aligned_cols=190 Identities=15% Similarity=0.092 Sum_probs=106.8
Q ss_pred CHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh-ccCCHHHH----HHHHHHHHHhhcChhh
Q 009320 305 FVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL-RAESERTR----HDSALALYHLTLIQSN 378 (537)
Q Consensus 305 ~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL-~~~~~~~~----~~A~~aL~nLs~~~~n 378 (537)
.+..++.+... .+...+..++..|..|.--......+ ...+..+..-+ .......+ ....|....|..-..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~- 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH- 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC-
Confidence 45666665443 34667777777776664221110000 12233333333 12222223 333333333322111
Q ss_pred HHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcC-hhh--------HHHHHhC----CcHHHHHHHHhccCCCCHHHH
Q 009320 379 RVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAAS-NEG--------RSAILDA----NGVSILVGMLRESGSDSEATR 445 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~-~~~--------r~~i~~~----g~I~~Lv~lL~~~~~~~~~~~ 445 (537)
-.....+..|+++|.+.+....++..+.-|... ++. ...+.+. ..++.|++..+. .+...+
T Consensus 267 ---~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~---~~~~~k 340 (415)
T PF12460_consen 267 ---PLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE---ADDEIK 340 (415)
T ss_pred ---chHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh---cChhhH
Confidence 112236777888888876666677777766665 321 1112222 346677776666 455588
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 446 ENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 446 e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
.+.+.+|..+..+-+...-.-.-...+|.|++-+...+..++..+..+|..+-...++
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 8999999999886542221212235778888888888999999999999888877544
No 267
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=80.06 E-value=2.1 Score=37.29 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=41.2
Q ss_pred CCccccccccccccCCeec----CCCccccHHHHHHHHHc--CCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVV----STGQTFDRVSVQVCREL--GFLPDLENGFKPDFS 76 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~----~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~ 76 (537)
|.-+.|-||+|.-.|+--+ .||.+.|-.|-..-|+. -+..||+|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4668899999999999887 78999999999884433 344699999888653
No 268
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.83 E-value=7.5 Score=44.37 Aligned_cols=143 Identities=17% Similarity=0.123 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHh--hcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSI--CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i--~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~ 299 (537)
++.|++.........+-.=+..|.+.-.+-+. +.+ .-....|+|++.|+-.|..++..+..+|.-+.. ++.-...
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 45666666543333343334444444432222 222 235678999999999999999888888875554 2222111
Q ss_pred HHhcCCHHHHHHHHccCC---HHHHHHHHHHHHHccc-CcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHH
Q 009320 300 IVRSGFVPLLIDVLKSGS---EESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAESERTRHDSALA 368 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~---~e~~~~Aa~~L~~Ls~-~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~a 368 (537)
-+ .-.+|.++.+=++.+ ..+|+.|...|..|+. .+.....-.+..++.+|.+.|.+...-+++.|+.+
T Consensus 947 ~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 947 HL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 11 234666666655444 6789999999999998 55555555567788999999998777778887765
No 269
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=79.72 E-value=85 Score=34.99 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhc---CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc--CCH
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICT---PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS--GFV 306 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~---~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~--g~v 306 (537)
.-.++.+--|+..||.+.++...+-..+-. ...+..++..+. .++..+--++++|.|+-.+..+++.++.. -.+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESIL 633 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 334455666778888777665544444332 223444444433 45667888999999999988777777643 222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHhccC-----CHHHHHHHHHHHHHhhcChhhH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHALRAE-----SERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL~~~-----~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
..++..-...+..++...+....|++.. .++- +.+..+.|...+... +-++.-.++.||.+|+..+.+.
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 2222222233455555555555555421 1111 133444444444322 2345666778888999888888
Q ss_pred HHHHhcCcHHHHHHHhcC
Q 009320 380 VKLVKLNAVATLLTMVKS 397 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~ 397 (537)
.++...--|..++.-+.+
T Consensus 710 ~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 888776667777766653
No 270
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.01 E-value=11 Score=33.73 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=60.2
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHhhcCCCC
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L~~~~~e 503 (537)
++..|.+-|.+ .++.++-.|+.+|-.+.. ++..+...+.....+..|+.++.. .+..++++...+++..+..-..
T Consensus 38 a~ral~KRl~~---~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 38 CLKAIMKRLNH---KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35566676666 689999999999999887 456677777788899999999877 7899999999999887765443
No 271
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.75 E-value=26 Score=34.59 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=100.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC--CHHHHHHHHcc----CCHHHHHHHHHHHHHcccCcchhhHH
Q 009320 268 LRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG--FVPLLIDVLKS----GSEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 268 Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g--~v~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
+...+..-..+-+--++..++-+..++.....+...+ ....+..++.. ..+..+..++++|.|+-....++..+
T Consensus 68 ~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~ 147 (268)
T PF08324_consen 68 LLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLL 147 (268)
T ss_dssp HHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHH
Confidence 3344433333334555666666666665555554432 24444554433 35778889999999999888888887
Q ss_pred hhc-C-chHHHHHHhccC----CHHHHHHHHHHHHHhhcCh-hhH-HHHHhcCcHHHHHHHh----cCCchHHHHHHHHH
Q 009320 342 GVL-G-ALQPLMHALRAE----SERTRHDSALALYHLTLIQ-SNR-VKLVKLNAVATLLTMV----KSGESTSRVLLILC 409 (537)
Q Consensus 342 ~~~-g-~l~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~-~n~-~~iv~~g~v~~Lv~lL----~~~~~~~~al~~L~ 409 (537)
... + .+...+..+... +..++..++.+++|++..- .++ ..-.....+..+++.+ .+.+..-+++.+|.
T Consensus 148 ~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlG 227 (268)
T PF08324_consen 148 LSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALG 227 (268)
T ss_dssp HCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 753 3 344444444443 5678888899999998532 111 1111122445555533 23446677889999
Q ss_pred HHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHH
Q 009320 410 NLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 410 nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
+|...+.......+.-.+...+.-... ....+++++.+
T Consensus 228 tL~~~~~~~~~~~~~l~~~~~~~~~~~-~~~e~ri~~v~ 265 (268)
T PF08324_consen 228 TLLSSSDSAKQLAKSLDVKSVLSKKAN-KSKEPRIKEVA 265 (268)
T ss_dssp HHHCCSHHHHHHCCCCTHHHHHHHHHH-HTTSHHHHHHH
T ss_pred HHhccChhHHHHHHHcChHHHHHHHHh-cccchHHHHHh
Confidence 998766665555543223333332222 12456666554
No 272
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=78.22 E-value=2.2 Score=31.16 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=20.2
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHc-----C-CCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL-----G-FLPDLENGF 71 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-----~-~~~cp~~~~ 71 (537)
+.|.||.|++ .|+...+.+++.. . ...||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 4689999765 3444455554432 2 336999975
No 273
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=78.20 E-value=0.71 Score=54.00 Aligned_cols=47 Identities=6% Similarity=-0.042 Sum_probs=39.6
Q ss_pred CCCCCcccccccccccc-CCeecCCCccccHHHHHHHHHcCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMF-DPVVVSTGQTFDRVSVQVCRELGFLPDLENG 70 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~-dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 70 (537)
..+-..+.|+||+++|+ -=-+.-|||.||-.|+.-|.... ..||.|+
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-s~~~~~k 1195 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-SRCPICK 1195 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-ccCcchh
Confidence 34555679999999999 67788999999999999999874 4688886
No 274
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=78.10 E-value=9 Score=34.80 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHh-hcCChHHHHHHHHc--cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVV--SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVP 307 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~--s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~ 307 (537)
...+.+....++..+..+--..++.-..+ ...|.++.++.+.. +++..++..++.+|..=+.++..+..|.+ .+++
T Consensus 53 ~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~ 131 (157)
T PF11701_consen 53 DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVS 131 (157)
T ss_dssp CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHH
T ss_pred ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHH
Confidence 34344466778888888877666665555 47899999999998 67788888887777666666666666665 4577
Q ss_pred HHHHHHccC-CHH-HHHHHHHHHHH
Q 009320 308 LLIDVLKSG-SEE-SQEHAAGALFS 330 (537)
Q Consensus 308 ~Lv~lL~~~-~~e-~~~~Aa~~L~~ 330 (537)
-|-+.++.+ +.. +|..|+-.|..
T Consensus 132 ~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 132 WLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHccccchHHHHHHHHHHHhc
Confidence 888888544 444 68888777754
No 275
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.72 E-value=66 Score=35.79 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=94.7
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh----cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcC
Q 009320 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR----SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG 345 (537)
Q Consensus 270 ~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~----~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g 345 (537)
.++..-+.+.+--|+.+|..+..+...-..+.. ...+..++..+. +.+..+..++++|.|+-.++.++..+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~- 628 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR- 628 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH-
Confidence 344455677777888888877776543333332 235556666665 56777888999999998887776666532
Q ss_pred chHHHHHHh---ccC-CHHHHHHHHHHHHHhhc--ChhhHHHHHhcCcHHHHHHHhc-------CCchHHHHHHHHHHHh
Q 009320 346 ALQPLMHAL---RAE-SERTRHDSALALYHLTL--IQSNRVKLVKLNAVATLLTMVK-------SGESTSRVLLILCNLA 412 (537)
Q Consensus 346 ~l~~Lv~lL---~~~-~~~~~~~A~~aL~nLs~--~~~n~~~iv~~g~v~~Lv~lL~-------~~~~~~~al~~L~nLa 412 (537)
...+...+ +.. +..+...-+....|++. ...+-. .|..+.|...+. +-+..-+.+.+|.+|+
T Consensus 629 -~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 629 -LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred -HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 22222222 222 23444444444445442 222221 455555555443 1112345788888998
Q ss_pred cChhhHHHHHhCCcHHHHHHHHhc
Q 009320 413 ASNEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 413 ~~~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
..+.....+.+.-.+..+++-++.
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHH
Confidence 888777777766667788777765
No 276
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.53 E-value=1.1 Score=50.55 Aligned_cols=46 Identities=9% Similarity=-0.080 Sum_probs=35.2
Q ss_pred cccccccccccc--CCeec------CCCccccHHHHHHHHHcC-CCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMF--DPVVV------STGQTFDRVSVQVCRELG-FLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~--dPV~~------~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~ 74 (537)
.=.|+||.-+.. |- .+ .|.|.|--+|+-+||+.. +..||.||..++
T Consensus 1469 ~eECaICYsvL~~vdr-~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDR-SLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhc-cCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345999998865 32 22 467999999999999874 558999997664
No 277
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.35 E-value=0.61 Score=45.75 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=29.8
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCC--CCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFL--PDLENGFK 72 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~--~cp~~~~~ 72 (537)
+-+|-||.+.-+|=|.++|||..- +++-|.. .||+||+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVt------Ct~CGkrm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVT------CTKCGKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEe------ehhhccccccCchHHHH
Confidence 789999999999999999999752 2222433 58888763
No 278
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=1 Score=35.04 Aligned_cols=50 Identities=16% Similarity=-0.028 Sum_probs=33.7
Q ss_pred CCccccccccccccC-Ceec-CCCccccHHHHHHHHHcC--CCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD-PVVV-STGQTFDRVSVQVCRELG--FLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~-~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~ 75 (537)
|-+=.||-|+-.=.| |.++ -|-|.|-+.||.+|+... ...||.||+....
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 344455555444333 4333 688999999999999653 3479999987643
No 279
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.17 E-value=13 Score=35.74 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCCHHHHH
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-----SRYSIVQTNAVASLVNLSLEKK--NKVLIVRSGFVPLLI 310 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-----s~~~~v~~~a~~~L~nLs~~~~--~k~~i~~~g~v~~Lv 310 (537)
.-.|+..|.-++ +.++.+..+..+..--.|..+|. +..+-++..++.++..|.++++ ....+....+||..+
T Consensus 117 vcnaL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 344566666666 56777777777665444555553 2345678889999999998653 344555678999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--------cCchHHHHHHh-ccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 311 DVLKSGSEESQEHAAGALFSLALEDENKMAIGV--------LGALQPLMHAL-RAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 311 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--------~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
+++..|+.-.+..|+-++..+-.++.+-..|.+ ..++..++.-+ +.++.+..+.+..+-..||..+..|.
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 999998877777777777666666654444432 11222222222 22344555555555555555544443
No 280
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=76.94 E-value=87 Score=35.94 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=94.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~ 343 (537)
.|.+...+++..+.++.+....+..+-. .+..-........++.++.+-......++......+..++.... ...+ .
T Consensus 439 lp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-~~~~-~ 516 (759)
T KOG0211|consen 439 LPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-VEFF-D 516 (759)
T ss_pred ChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-hHHh-h
Confidence 5666667777788888877766654443 23334445555667777777666667777777777777765443 1111 1
Q ss_pred cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch--HHH---HHHHHHHHhcChhhH
Q 009320 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES--TSR---VLLILCNLAASNEGR 418 (537)
Q Consensus 344 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~~~---al~~L~nLa~~~~~r 418 (537)
...-+.+..-+.+....+++.|+..|..++..-. ..-.....++.++.+..++.. +.. ++..|..+.+.+-..
T Consensus 517 ~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~ 594 (759)
T KOG0211|consen 517 EKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITC 594 (759)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHH
Confidence 1111222222333344567777766655553211 111222345555555544321 111 344444444433222
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
.. .++.+.++..+ ..+.++-+++..|..+..
T Consensus 595 ~~-----Llp~~~~l~~D---~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 595 ED-----LLPVFLDLVKD---PVANVRINVAKHLPKILK 625 (759)
T ss_pred HH-----HhHHHHHhccC---CchhhhhhHHHHHHHHHh
Confidence 22 23555555554 556777777777666654
No 281
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.84 E-value=13 Score=33.25 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.+.|.+.++.++..|+..|..+.++. ......+...+.+..|++++. ..++.|+..++..|..-+.
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999874 556777888999999999986 4677899999998877664
No 282
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.79 E-value=14 Score=28.98 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC
Q 009320 402 SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEAR 470 (537)
Q Consensus 402 ~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g 470 (537)
..++.++.++++.+.|...+.+.+.++.++++... ...-.+|--|..+|.-++...+ -.+++.+.|
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--SPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--CCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 34899999999999999999988999999999987 3567888889999988887654 344444443
No 283
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.61 E-value=20 Score=40.78 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=98.6
Q ss_pred cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHH-
Q 009320 315 SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLT- 393 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~- 393 (537)
++-+.+|..+...|..+....+-+..+...+++...++.|++.++-+-.+|...+..||.. ....++|-|.+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~ 810 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEE 810 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHH
Confidence 3445678888888888887776666666788999999999998888888888877777642 33456666666
Q ss_pred HhcCC-----chHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh-HHHHHH
Q 009320 394 MVKSG-----ESTSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL-RFKGLA 466 (537)
Q Consensus 394 lL~~~-----~~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~-~~~~~i 466 (537)
..... +.+-++=.++.++...- +-..... +-.+...+..++. .+..-|-.++++|.+||.-.. .....+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvre---pd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVRE---PDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCC---chHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 33221 12222223333332210 0000000 1123344444443 355667888888888886321 111111
Q ss_pred HHCCcHHHHHHH-HHhCCHHHHHHHHHHHHHhhcCC
Q 009320 467 KEARAAEVLREV-EERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 467 ~~~g~i~~L~~l-l~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..++..++.+ .-+++.-+||.|+.++..+-.+.
T Consensus 887 --~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 887 --HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred --HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 1233344444 33566778888888876665543
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.80 E-value=14 Score=42.11 Aligned_cols=192 Identities=12% Similarity=0.173 Sum_probs=113.7
Q ss_pred HHHhcCCHHHHHHHHccC--------CHHHHHHHHHHHHHcccCcchhhHHhhc--------CchHHHHHHhcc----CC
Q 009320 299 LIVRSGFVPLLIDVLKSG--------SEESQEHAAGALFSLALEDENKMAIGVL--------GALQPLMHALRA----ES 358 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~--------~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~--------g~l~~Lv~lL~~----~~ 358 (537)
.+...+++..++.+..-. ..+...+|..+|..+...++.+..++.. .+|..++..-.. .+
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 334445666666655422 2567888999999999999888877721 133333333221 27
Q ss_pred HHHHHHHHHHHHHhhc-ChhhHHHHHhc-C----cHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHH
Q 009320 359 ERTRHDSALALYHLTL-IQSNRVKLVKL-N----AVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVG 432 (537)
Q Consensus 359 ~~~~~~A~~aL~nLs~-~~~n~~~iv~~-g----~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~ 432 (537)
++++..|+.+|.|+.. .++++...+.. | --.. .+..+.-.++....|.. .+.++...++|..|++
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~---~l~~~~ks~~le~~l~~------mw~~Vr~ndGIkiLl~ 746 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI---FLGAGTKSAKLEQVLRQ------MWEAVRGNDGIKILLK 746 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc---cccCCCchHHHHHHHHH------HHHHHhcCccHHHHHH
Confidence 8999999999999755 44777554432 1 0000 11111111122223322 4556778899999999
Q ss_pred HHhcc--CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCc-----HHHHHH--HHH-hCCHH--HHHHHHHHHHHhhcC
Q 009320 433 MLRES--GSDSEATRENCVAALFALGHGNLRFKGLAKEARA-----AEVLRE--VEE-RGSQR--AKEKAKRILEMLKGR 500 (537)
Q Consensus 433 lL~~~--~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~-----i~~L~~--ll~-~~s~~--~k~~A~~lL~~L~~~ 500 (537)
+|.-+ .+.-+.++..|+.+|..|++++. +++++-..-. ++.|+. +.. ..+.. .-+.|+.+|+.....
T Consensus 747 Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t-VrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g~ 825 (1516)
T KOG1832|consen 747 LLQYKNPPTTADCIRALACRVLLGLARDDT-VRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQGT 825 (1516)
T ss_pred HHhccCCCCcHHHHHHHHHHHHhccccCcH-HHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhCC
Confidence 99863 22356789999999999999875 5666554332 333332 111 12233 346788888877665
No 285
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=74.88 E-value=11 Score=28.15 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=43.1
Q ss_pred HHHhhcCChHHHHHHHHCCcHHHHHHH-HHhCCHHHHHHHHHHHHHhhcCCCCCc
Q 009320 452 LFALGHGNLRFKGLAKEARAAEVLREV-EERGSQRAKEKAKRILEMLKGREDDDE 505 (537)
Q Consensus 452 L~~L~~~~~~~~~~i~~~g~i~~L~~l-l~~~s~~~k~~A~~lL~~L~~~~~e~~ 505 (537)
|..||... .-++.+.+.|+.+.|.++ ....++.+++..-.+..+|-..+++.+
T Consensus 2 LllL~~T~-~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~ 55 (58)
T PF04064_consen 2 LLLLCATR-EGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEG 55 (58)
T ss_pred HhHHhccH-HHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 55677654 467888999999999988 667789999999999999998876653
No 286
>PF04641 Rtf2: Rtf2 RING-finger
Probab=74.88 E-value=2.4 Score=41.99 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=30.6
Q ss_pred ccccccccccccCCeec-CCCccccHHHHHHHHHcC
Q 009320 28 EFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELG 62 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~ 62 (537)
-+.|+|+++.+.+||+. .-|+-|.+.+|..|+-..
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 46799999999999865 569999999999998664
No 287
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=73.59 E-value=2.5 Score=33.26 Aligned_cols=29 Identities=3% Similarity=-0.267 Sum_probs=25.0
Q ss_pred CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 45 STGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 45 ~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
-|-|.|--.||.+|++. ...||.++++..
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 57899999999999998 558999988753
No 288
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=73.32 E-value=2.3 Score=40.55 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=40.4
Q ss_pred ccccccccccccCCee-cCCCccccHHHHHHHHHcC-CCCCCC--CCCCCCCCCCcccH
Q 009320 28 EFLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELG-FLPDLE--NGFKPDFSTVIPNL 82 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~-~~~cp~--~~~~~~~~~l~pn~ 82 (537)
+.+|||+.+-..-|.+ ..|.|.|||..|...++-. .+.||+ |.+...-..++-.+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~ 247 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDH 247 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhH
Confidence 3689999999999975 4889999999999987642 335773 66655555555443
No 289
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=73.26 E-value=63 Score=36.88 Aligned_cols=195 Identities=16% Similarity=0.126 Sum_probs=116.4
Q ss_pred HHHHhcC-CCccHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCch--HHHHHHhccCCH-H
Q 009320 286 SLVNLSL-EKKNKVLIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGAL--QPLMHALRAESE-R 360 (537)
Q Consensus 286 ~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l--~~Lv~lL~~~~~-~ 360 (537)
+|.++.. .+++.+.+.+.|++..+.+.+.. ...+.+..+.+.|.+++...+++.......-+ ..+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778877 46788999999999999999975 35678889999999998776655444321111 122223443333 5
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHH-HHhcChhhHHHHHhCCcHHH-HHHHHhccC
Q 009320 361 TRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILC-NLAASNEGRSAILDANGVSI-LVGMLRESG 438 (537)
Q Consensus 361 ~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~-nLa~~~~~r~~i~~~g~I~~-Lv~lL~~~~ 438 (537)
.--.|+..|..+....+. ....+. .+.+...+. +....+.....+.....+.. +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~-------------r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~-- 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVF-------------RNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL-- 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccc-------------hHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc--
Confidence 555666666665544322 111111 111211111 11222211111111122222 5556655
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHH-HHhCCHHHHHHHHHHHHHhh
Q 009320 439 SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV-EERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 439 ~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l-l~~~s~~~k~~A~~lL~~L~ 498 (537)
+..+..+-.|++++.+++.........+.+.|++..+..+ .......+++.+..++-...
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 2566778888999999988766688888899999999886 33336777888777765543
No 290
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.04 E-value=70 Score=37.62 Aligned_cols=241 Identities=16% Similarity=0.083 Sum_probs=135.4
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCccHHHHHhcCC
Q 009320 229 KLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL---EKKNKVLIVRSGF 305 (537)
Q Consensus 229 ~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~---~~~~k~~i~~~g~ 305 (537)
+|++.+.+.+...+..+..+-..++.+.....+.--+|.++.-+..-...+|...+.+|-.-.. +-..++.+
T Consensus 475 FLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqELl----- 549 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQELL----- 549 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHHH-----
Confidence 3577888888888888888887788887777788888888877765555666655554432111 11122221
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHHc-ccCcchhhHHhhcCchHHHHHHhcc---------------------------
Q 009320 306 VPLLIDVLKSGS-EESQEHAAGALFSL-ALEDENKMAIGVLGALQPLMHALRA--------------------------- 356 (537)
Q Consensus 306 v~~Lv~lL~~~~-~e~~~~Aa~~L~~L-s~~~~~k~~I~~~g~l~~Lv~lL~~--------------------------- 356 (537)
.|.-+|+.+- ...+.......+.| +.+...|..+.+-|+++.|...++.
T Consensus 550 --SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~ 627 (2799)
T KOG1788|consen 550 --SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFK 627 (2799)
T ss_pred --HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhh
Confidence 3444444332 22222333333333 3444566666666777666665543
Q ss_pred ------------------CC--HHHHHH------HHHHHHHhh-cChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHH
Q 009320 357 ------------------ES--ERTRHD------SALALYHLT-LIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILC 409 (537)
Q Consensus 357 ------------------~~--~~~~~~------A~~aL~nLs-~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~ 409 (537)
++ ....+. ...+|..|- -+.+|.....++.++..++.++-+++.+.-.+.++.
T Consensus 628 ~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLrivs 707 (2799)
T KOG1788|consen 628 QHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIVS 707 (2799)
T ss_pred hccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHHH
Confidence 10 000100 112333333 356777777788888888777766666666777777
Q ss_pred HHhcCh-hhHHHHHhCCcHHHHHHHHhccCCC---------CHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHH
Q 009320 410 NLAASN-EGRSAILDANGVSILVGMLRESGSD---------SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVE 479 (537)
Q Consensus 410 nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~---------~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll 479 (537)
.|-..+ .. +.+.-+-.++..|++.... ........+++||.+..-+...+....+++++..|...+
T Consensus 708 cLitvdpkq----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 708 CLITVDPKQ----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred HHhccCccc----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHH
Confidence 764422 21 0111233455555541111 234456667888888764545666677788887776654
Q ss_pred H
Q 009320 480 E 480 (537)
Q Consensus 480 ~ 480 (537)
.
T Consensus 784 h 784 (2799)
T KOG1788|consen 784 H 784 (2799)
T ss_pred H
Confidence 3
No 291
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.82 E-value=35 Score=31.22 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=68.3
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCC-HHHHHHHHHHHHHhhc----Chh
Q 009320 305 FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAES-ERTRHDSALALYHLTL----IQS 377 (537)
Q Consensus 305 ~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~-~~~~~~A~~aL~nLs~----~~~ 377 (537)
.+..+..+|.+.+.+.|-.++.++..++...+. ..+.+ ..-+..|+.+|+..+ +.+++.++.+|..|.. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 455677888888888888888777776655432 23322 236888999998864 4566777777766553 344
Q ss_pred hHHHHHh---cCcHHHHHHHhcCCchHHHHHHHHHHHh
Q 009320 378 NRVKLVK---LNAVATLLTMVKSGESTSRVLLILCNLA 412 (537)
Q Consensus 378 n~~~iv~---~g~v~~Lv~lL~~~~~~~~al~~L~nLa 412 (537)
...++.. .++++.+++++++....+.++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3444433 3466666666665555666777766653
No 292
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=72.72 E-value=1.2e+02 Score=31.25 Aligned_cols=158 Identities=13% Similarity=0.003 Sum_probs=114.7
Q ss_pred HHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-hh-----HHHHHh--cCcHHHHHHHhcCCchHHHHHHHHHHH
Q 009320 340 AIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ-SN-----RVKLVK--LNAVATLLTMVKSGESTSRVLLILCNL 411 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n-----~~~iv~--~g~v~~Lv~lL~~~~~~~~al~~L~nL 411 (537)
.+...+.+..|+..|..-+-++++.+.....++.... ++ ...+.. ..++..|+.--...+..-.+-.+|..+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 3456788889999999888899999988888876432 22 233433 346666666666677777788888888
Q ss_pred hcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC---cHHHHHHHHHhCCHHHHH
Q 009320 412 AASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEAR---AAEVLREVEERGSQRAKE 488 (537)
Q Consensus 412 a~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g---~i~~L~~ll~~~s~~~k~ 488 (537)
+..+.-...+.....+..+.+.+.. .+-++...|..++..|-.............+ .+...-.|+.+++--+|+
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~---~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQL---PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTS---SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcC---CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 8888777788888888889999887 7889999999999997775544433333333 455666788999999999
Q ss_pred HHHHHHHHhhcC
Q 009320 489 KAKRILEMLKGR 500 (537)
Q Consensus 489 ~A~~lL~~L~~~ 500 (537)
++..+|.-|--.
T Consensus 228 qslkLL~ellld 239 (335)
T PF08569_consen 228 QSLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHHS
T ss_pred hhHHHHHHHHHc
Confidence 999999655433
No 293
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=72.50 E-value=6.7 Score=41.62 Aligned_cols=190 Identities=16% Similarity=0.116 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC----hhh-HHHHH--hcCcHHHHH
Q 009320 321 QEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLI----QSN-RVKLV--KLNAVATLL 392 (537)
Q Consensus 321 ~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~----~~n-~~~iv--~~g~v~~Lv 392 (537)
+..|.+++.-+...+..+...+ -..+....+..|.+..-..+.++++++.|++.. -.+ +..-- ..-.+..++
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~ 487 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKML 487 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 3344444444444444444433 345556666666665667888899999887631 111 11111 111222232
Q ss_pred HHhc-----CCchHHHHHHHHHHHhcChhhH-----HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH-
Q 009320 393 TMVK-----SGESTSRVLLILCNLAASNEGR-----SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR- 461 (537)
Q Consensus 393 ~lL~-----~~~~~~~al~~L~nLa~~~~~r-----~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~- 461 (537)
+.-. ...+..++...|.|+...-+.. ..+. .+.+..+..-.-. .....++=+|+.++.||..+..-
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~--~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLT--EAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceec--ccccccchHHHHHHHHhhcCcccc
Confidence 2221 1225556777777775432211 1111 2222222221111 13567899999999999986642
Q ss_pred HHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHhhcCCCCC--cchhhhhhh
Q 009320 462 FKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEMLKGREDDD--EDVDWEGVL 513 (537)
Q Consensus 462 ~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L~~~~~e~--~~~d~~~v~ 513 (537)
.+..=...-+++.|..|+.+ .+-+++-+|+.+|..-...+++- =.+.|+..+
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv 619 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALV 619 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHH
Confidence 23333334467888887554 56789999999998766554322 334454443
No 294
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.22 E-value=19 Score=32.19 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.++|.+.++.++..|+..|..+.++.. .....+.....+.-|++++.. .+..|+..++..|...+.
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999998764 456677888999999999977 788999999998887764
No 295
>PLN02195 cellulose synthase A
Probab=72.15 E-value=2.9 Score=48.25 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=37.1
Q ss_pred ccccccc-----cccCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 30 LCPVSGS-----LMFDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 30 ~CpI~~~-----~m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
.|.||++ .+-+|-+. .||.-.||.|.+-=.++|+..||+|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 6999998 45566554 789999999997666778889999998887
No 296
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.89 E-value=1.8e+02 Score=32.90 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=68.4
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLV 383 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 383 (537)
|.+.-|++-..+.+..+|...+.+|..++....-...-.-.+....|..-+.+..+.++..|+.+|..+-..+.+ -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 344455555566778899999999988876332221112223455555556666788999999999888632211 0
Q ss_pred hcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHH
Q 009320 384 KLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 384 ~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+..++..++.+++.+...+-=-.+|.|++.++..+..++
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIV 199 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHH
Confidence 124677778888754433333334556666555444444
No 297
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=71.87 E-value=35 Score=36.27 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=77.6
Q ss_pred CCCChh-HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHH--------HHHhhcCC----hHHHHHHHHccCCHHHHHHH
Q 009320 217 TPLAPE-EEELSKKLRSADIALQEEGVIALRRLTRTNEEL--------RVSICTPN----LLSALRNLVVSRYSIVQTNA 283 (537)
Q Consensus 217 ~~~~~~-~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~--------r~~i~~~g----~i~~Lv~lL~s~~~~v~~~a 283 (537)
+|.... +..|++.|.+ ++....|++.+.-+..+.++. -+.+.+.. .+|.|++.....+.+.+..-
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 444333 4677777766 555677888888777652222 11222222 36666666666666677778
Q ss_pred HHHHHHhcCCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 284 VASLVNLSLEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 284 ~~~L~nLs~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
+.+|.++-.+-.....+-+ ...+|.|++-|..++.+++..+..+|..+....
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8888888775444333434 467899999999999999999999998876554
No 298
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.71 E-value=85 Score=35.65 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=115.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhh-----
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM----- 339 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~----- 339 (537)
.+++-..|.+....+.-+|+.++.+|.... -..+.. .+..|--+|.+...-+|-.|..+|..++.....+.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~ 322 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNL 322 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccch
Confidence 455555666778888889999988887521 112221 56666667888888899999999999875443221
Q ss_pred ----HHhh---cCchHHHHHHhccCCHHHH----HHHHHHHHHhhcChhhH-------------HHHHhcCcHHHHHHHh
Q 009320 340 ----AIGV---LGALQPLMHALRAESERTR----HDSALALYHLTLIQSNR-------------VKLVKLNAVATLLTMV 395 (537)
Q Consensus 340 ----~I~~---~g~l~~Lv~lL~~~~~~~~----~~A~~aL~nLs~~~~n~-------------~~iv~~g~v~~Lv~lL 395 (537)
.|.+ .-+-.++..+|+.+..... +.......+++. +++ ...-..+.+..|-.+|
T Consensus 323 elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 323 DLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred hHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 1221 1123344555655543322 222222222321 111 1111234455555555
Q ss_pred cC-CchHHH--HHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh------H----
Q 009320 396 KS-GESTSR--VLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL------R---- 461 (537)
Q Consensus 396 ~~-~~~~~~--al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~------~---- 461 (537)
.+ +....+ ...+|..+.. .++.|.. ++..|+..+.+ -+....+..+|.-|-...+ .
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED-----ce~~~i~~rILhlLG~EgP~a~~Pskyir~ 470 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED-----CEFTQIAVRILHLLGKEGPKAPNPSKYIRF 470 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh-----ccchHHHHHHHHHHhccCCCCCCcchhhHH
Confidence 43 332222 3333333333 3343332 34566666643 2345556666666654211 1
Q ss_pred ------HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 462 ------FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 462 ------~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
....+.+++++..|-++. -+++..+.....+|+.+-.+.+++
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg-~~~~~l~~sI~vllkRc~~D~Dde 518 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFG-AQDVVLLPSILVLLKRCLNDSDDE 518 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHh-cCCCCccccHHHHHHHHhcCchHH
Confidence 112233455666666665 445666666667776666665554
No 299
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=71.58 E-value=3.6 Score=41.50 Aligned_cols=62 Identities=13% Similarity=-0.051 Sum_probs=44.9
Q ss_pred CCCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
....+-|-||||.+.|.-|..= +-||.-|-.|=. +-...||.|+.++.+ +-++++...++.-
T Consensus 43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred ccchhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 4566778999999999999542 449999999843 223469999988863 2556666666654
No 300
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=71.47 E-value=93 Score=36.62 Aligned_cols=217 Identities=16% Similarity=0.086 Sum_probs=130.2
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
++++-|+..|++.+..+|-.||.-+..++.... ..+ ...++...++++.-. ++.+-..|+.+|..|+...--....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 567788888888899999999999999876544 112 223566667766544 3556667788887776543222211
Q ss_pred HhcCcHHHHHHHhc---------C-CchHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 383 VKLNAVATLLTMVK---------S-GESTSRVLLILCNLAASN--EGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 383 v~~g~v~~Lv~lL~---------~-~~~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
+ ..++|.++.-|. . ..+++.|+-+++.++... ..-+.+.+.=.-..|...+-+ .+-.+|..|.+
T Consensus 418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFD---revncRRAAsA 493 (1133)
T KOG1943|consen 418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFD---REVNCRRAASA 493 (1133)
T ss_pred H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcC---chhhHhHHHHH
Confidence 1 135566665553 1 235677888888887643 221223321111233334433 45667777877
Q ss_pred HHHHhhcC--Ch----H--------------------HHHHHHHCCcHHHHHHH-----HHhCCHHHHHHHHHHHHHhhc
Q 009320 451 ALFALGHG--NL----R--------------------FKGLAKEARAAEVLREV-----EERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 451 ~L~~L~~~--~~----~--------------------~~~~i~~~g~i~~L~~l-----l~~~s~~~k~~A~~lL~~L~~ 499 (537)
+|...... +. . ...++.-.|....+++- +.+=+..+++.|+..|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 77766541 10 0 11222334444555542 334589999999999999999
Q ss_pred CCCCCcch-hhhhhhhcCCcccccccccc
Q 009320 500 REDDDEDV-DWEGVLDSGGLTRSRYRVGL 527 (537)
Q Consensus 500 ~~~e~~~~-d~~~v~~~g~~~~~~~~~~~ 527 (537)
.+++..+. -+-.++++-.++---+|.|.
T Consensus 574 ~~pk~~a~~~L~~lld~~ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 574 TEPKYLADYVLPPLLDSTLSKDASMRHGV 602 (1133)
T ss_pred hhHHhhcccchhhhhhhhcCCChHHhhhh
Confidence 99887553 34777877776666555554
No 301
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=71.25 E-value=1.9 Score=43.01 Aligned_cols=27 Identities=15% Similarity=0.453 Sum_probs=21.4
Q ss_pred cccccccccccc---CCeecCCCccccHHH
Q 009320 28 EFLCPVSGSLMF---DPVVVSTGQTFDRVS 54 (537)
Q Consensus 28 ~~~CpI~~~~m~---dPV~~~~G~ty~r~~ 54 (537)
.|.||+|+.-|. .....+.||+||.+-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999995 335567799999874
No 302
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=71.20 E-value=13 Score=33.67 Aligned_cols=143 Identities=20% Similarity=0.137 Sum_probs=82.7
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 009320 306 VPLLIDVLK--SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKL 382 (537)
Q Consensus 306 v~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~i 382 (537)
+..++..|. ....++|..+.-++..+- +..+.... .-.-.-+-.++..++......+..+|..|-. .++....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555444 345677888877777662 22222221 1111222233333333356666666666543 55666666
Q ss_pred H-hcCcHHHHHHHhc--CCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHH-HHHHHHHHHHH
Q 009320 383 V-KLNAVATLLTMVK--SGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEA-TRENCVAALFA 454 (537)
Q Consensus 383 v-~~g~v~~Lv~lL~--~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~-~~e~A~~~L~~ 454 (537)
. ..|..+.++.++. ..+ .+..++..|..=|.....|..+.+ .+++.|-+++.. ..++. ++..|+-+|..
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~--~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKN--SKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTT--CC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHcc--ccchHHHHHHHHHHHhc
Confidence 6 5899999999988 333 334467777666777777777774 557888888865 14444 67766666543
No 303
>PLN02189 cellulose synthase
Probab=71.07 E-value=3.2 Score=48.25 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=36.8
Q ss_pred cccccccccc-----ccCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSL-----MFDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
.-.|+||++= +-+|-+. .||.-.||.|.+-=.++|+..||+|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999984 4455443 588899999997767788889999998775
No 304
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=71.05 E-value=2.1e+02 Score=33.27 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc--CCHHHHHHHHHHHHHhhcChhhHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA--ESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
.++++.|.++....+.++......+|...+..+.-.....+..+.|..+.++.. .+|.+...+-.++-.|+....|..
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 466778888888778888888888898888777666666666677777777643 467777777777777777666665
Q ss_pred HHHhcCcHHHHHHHhcCCc------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 381 KLVKLNAVATLLTMVKSGE------STSRVLLILCNLAASN--EGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
.|.+ -.+|.++..|+... ...-++.+|..+.+.. .--..+. .-+.+.+.++.- |+++..+-.++-.+|
T Consensus 609 ~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tl--HsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 609 PMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITL--HSDDHETLQNATECL 684 (1005)
T ss_pred chHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhhee--ecCChHHHHhHHHHH
Confidence 5554 48999999997432 3444667776554422 2112222 344677777653 357778888888888
Q ss_pred HHhhcC
Q 009320 453 FALGHG 458 (537)
Q Consensus 453 ~~L~~~ 458 (537)
..+...
T Consensus 685 ra~Is~ 690 (1005)
T KOG2274|consen 685 RALISV 690 (1005)
T ss_pred HHHHhc
Confidence 777653
No 305
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=71.03 E-value=11 Score=36.70 Aligned_cols=80 Identities=25% Similarity=0.217 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhcC---CHHHHHHHH----c-cCCHHHHHHHHHHHHHcccCcchhh-HHh-hcCch
Q 009320 278 IVQTNAVASLVNLSLEKKNKVLIVRSG---FVPLLIDVL----K-SGSEESQEHAAGALFSLALEDENKM-AIG-VLGAL 347 (537)
Q Consensus 278 ~v~~~a~~~L~nLs~~~~~k~~i~~~g---~v~~Lv~lL----~-~~~~e~~~~Aa~~L~~Ls~~~~~k~-~I~-~~g~l 347 (537)
.-|.-|+.+|..|+..+.|...+...+ .++.|++.| . .+++-.||.|+.+|.+|+..+..-. .++ +.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 458999999999999999988877644 244444443 3 3568899999999999998876444 444 57899
Q ss_pred HHHHHHhccC
Q 009320 348 QPLMHALRAE 357 (537)
Q Consensus 348 ~~Lv~lL~~~ 357 (537)
..|+..+...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 306
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.87 E-value=26 Score=30.80 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChH-HHHHhhcCChHHHHHHHHcc---CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEE-LRVSICTPNLLSALRNLVVS---RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~s---~~~~v~~~a~~~L~nLs~ 292 (537)
++.|-+.|.++++.++..|+..|-.+.+.... ....+.....+.-|++++.. .+..++..++..|.+.+.
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999987654 66777776777778888864 478899999998887764
No 307
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.80 E-value=11 Score=31.04 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
.+..++.|.+..+.+|..++..|+.|.+... ...+...+++..+...|.++++-+--+|+..|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3677888888899999999999999987655 2233345677888888888888888999999988886
No 308
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=70.54 E-value=88 Score=36.23 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=97.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH-ccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV-VSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
+.+-..+.+.++..+.+|++.+........ ......-.|.+-.++... .+.+..+...++.+|..++.. ...... .
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-Y 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-H
Confidence 355556678899999999998887774332 111112234444444443 345677788888888888763 222111 1
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh-cCh-hhH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLT-LIQ-SNR 379 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~-~n~ 379 (537)
..+..+.|+..+......++..+..++-...... .-...++.+...+.++++..+..+...+.-.. ... .+.
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 2356788888888777777777666664443210 11235667778888888887777655544332 222 222
Q ss_pred HHHHhcCcHHHHHHHhcCC
Q 009320 380 VKLVKLNAVATLLTMVKSG 398 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~ 398 (537)
..-.-.++++.++....|.
T Consensus 408 ~~~t~~~l~p~~~~~~~D~ 426 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT 426 (815)
T ss_pred chhhHHHHhHHHhhhccCC
Confidence 2222234566666666543
No 309
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=70.48 E-value=32 Score=28.62 Aligned_cols=68 Identities=16% Similarity=0.067 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 009320 261 TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGAL 328 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L 328 (537)
+...+..|+..+..++...++.++..|..+..++.....+.+-|++.-|-++=..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34456667777777776788999999999999999999999999998766665555566655554444
No 310
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=70.03 E-value=27 Score=31.09 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=64.6
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHh------CCHHHHHHHHHHHHHhh
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEER------GSQRAKEKAKRILEMLK 498 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~------~s~~~k~~A~~lL~~L~ 498 (537)
++..|.+-|.+ .++.++-.|+.+|-.+.. .+..+...+...+.+.-|++++.. .+..+|++...+++.-+
T Consensus 39 a~rai~krl~~---~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQS---PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45677777776 789999999999998887 456777777788888889998753 46899999999998777
Q ss_pred cCCCCCcc--hhhhhhhhcCC
Q 009320 499 GREDDDED--VDWEGVLDSGG 517 (537)
Q Consensus 499 ~~~~e~~~--~d~~~v~~~g~ 517 (537)
..-+.+.. ..++.+...|-
T Consensus 116 ~~f~~~p~~~~~Y~~Lk~~G~ 136 (139)
T cd03567 116 LELPHEPKIKEAYDMLKKQGI 136 (139)
T ss_pred HHhcccchHHHHHHHHHHCCC
Confidence 55433311 23455555543
No 311
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=69.93 E-value=1.3e+02 Score=31.59 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=75.6
Q ss_pred CChHHHHHHHHccC---CHHHHHHHHHHHHHhcCCC-ccHHHHHhcCCHHHHHHHHc-cC---CHHHHHHHHHHHHHccc
Q 009320 262 PNLLSALRNLVVSR---YSIVQTNAVASLVNLSLEK-KNKVLIVRSGFVPLLIDVLK-SG---SEESQEHAAGALFSLAL 333 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~---~~~v~~~a~~~L~nLs~~~-~~k~~i~~~g~v~~Lv~lL~-~~---~~e~~~~Aa~~L~~Ls~ 333 (537)
..+...|...+... .+.+-..|+.++..+-.++ ..-..+.+.|.++.+++.+. .+ +.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 34455566666543 3567788888888887755 55667778999999999887 43 57777777889999999
Q ss_pred CcchhhHHhhcCchHHHHHHhccC
Q 009320 334 EDENKMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 334 ~~~~k~~I~~~g~l~~Lv~lL~~~ 357 (537)
+......+.+.+.++.+++++.+.
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999999875
No 312
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=69.82 E-value=1.1e+02 Score=29.63 Aligned_cols=134 Identities=22% Similarity=0.132 Sum_probs=80.1
Q ss_pred HHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC
Q 009320 226 LSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG 304 (537)
Q Consensus 226 Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g 304 (537)
|+..+ +..++..+...+..|-.++.++..+. .-++..|..+...+..+.+.-+...+..+-..+ ++.. +
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f----~ 74 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF----P 74 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH----H
Confidence 34434 56788888889999999987651111 123566666666666666555556665555422 2221 3
Q ss_pred CHHHHHHH--H------ccC--CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh-ccCCHHHHHHHHHHHHHhh
Q 009320 305 FVPLLIDV--L------KSG--SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL-RAESERTRHDSALALYHLT 373 (537)
Q Consensus 305 ~v~~Lv~l--L------~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs 373 (537)
.+..++.. + ..+ ..+.....+..+..++....+ .-...++.+..+| ...++.++..++.+|..||
T Consensus 75 ~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 75 FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34444433 1 111 244455556677777655544 1234677788888 6667788888888888887
No 313
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.70 E-value=4 Score=29.84 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.9
Q ss_pred ccccccccccc--cCCeec--CCCccccHHH
Q 009320 28 EFLCPVSGSLM--FDPVVV--STGQTFDRVS 54 (537)
Q Consensus 28 ~~~CpI~~~~m--~dPV~~--~~G~ty~r~~ 54 (537)
.-.|++|++-| .|.+++ .||-.|=|.|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 35799999999 788886 7899999999
No 314
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=69.29 E-value=30 Score=30.86 Aligned_cols=74 Identities=8% Similarity=0.055 Sum_probs=58.9
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhcCC
Q 009320 425 NGVSILVGMLRESGSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 425 g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.++..|.+-|.. +++.++-.|+.+|-.+..+ +..+...+...+.+..|+.++. ..++.+++++..+++.-+..-
T Consensus 41 ~a~ral~krl~~---~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLS---KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 345677777766 7899999999998888874 5667777778889999999876 567899999999998877553
No 315
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.01 E-value=63 Score=39.37 Aligned_cols=253 Identities=17% Similarity=0.135 Sum_probs=122.3
Q ss_pred HHHHHhcCCCHHHHHH-HHHHHHHhhccChHHHH-HhhcCChHHHHHHHHccCCHHHHHHHHHHHH---HhcCCCccHHH
Q 009320 225 ELSKKLRSADIALQEE-GVIALRRLTRTNEELRV-SICTPNLLSALRNLVVSRYSIVQTNAVASLV---NLSLEKKNKVL 299 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~-A~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~---nLs~~~~~k~~ 299 (537)
.|...+.+.++..+.. .+|.|. +.+.-...+. ..........++.+|.+.++-+|.-|..-|. .|. +...|+.
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs-~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg-d~~~k~~ 899 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLS-LVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG-DSSLKKS 899 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH-HHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC-CchhHHH
Confidence 3444456788877654 344433 2221111111 2223334577888888888777777766443 333 3344555
Q ss_pred HHhcCCHHHHHHHHccCCH-------HH---------------HHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC
Q 009320 300 IVRSGFVPLLIDVLKSGSE-------ES---------------QEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~-------e~---------------~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~ 357 (537)
++ ..|+.-|..|.. +. ......=|++|+. .+++++.+-.++.+.++.
T Consensus 900 LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh~ 968 (1702)
T KOG0915|consen 900 LV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANHN 968 (1702)
T ss_pred HH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhhh
Confidence 54 455555543321 11 1111122222221 133344555556665553
Q ss_pred C-HHHHHHHHHHHHHhhcChhhHHHHHh--cCcHHHHHHHhcCCc-hHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHH
Q 009320 358 S-ERTRHDSALALYHLTLIQSNRVKLVK--LNAVATLLTMVKSGE-STSRVLLILCNLAASNEGRSAILD--ANGVSILV 431 (537)
Q Consensus 358 ~-~~~~~~A~~aL~nLs~~~~n~~~iv~--~g~v~~Lv~lL~~~~-~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv 431 (537)
- =..++-|+--+..++... +.++-- -..||.|.++=.|++ -...++.-|+|--.. |-+..+-+ ......|+
T Consensus 969 A~wnSk~GaAfGf~~i~~~a--~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~-D~k~~vd~y~neIl~eLL 1045 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQA--GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT-DSKKVVDEYLNEILDELL 1045 (1702)
T ss_pred chhhcccchhhchHHHHHHH--HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHH
Confidence 1 112222222222222211 222221 236777777666766 355688888885332 22222211 34455666
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCChH--HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 432 GMLRESGSDSEATRENCVAALFALGHGNLR--FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 432 ~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~--~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.-|.+ ..-++||.++-+|..|-.+.+. ..+.+. ..-..+.+.+.+--+.+|+.|-.+.+.|+
T Consensus 1046 ~~lt~---kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1046 VNLTS---KEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred Hhccc---hhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655 6789999999999999986532 222221 12223333444444556655554444443
No 316
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=68.37 E-value=42 Score=37.50 Aligned_cols=223 Identities=12% Similarity=0.085 Sum_probs=117.5
Q ss_pred HHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 256 RVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 256 r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
-..++...+++.|+..+.-++ .....+..|..+.+.-+... ...+.+|.|+++++..+..+|..-..-+-.. .+
T Consensus 286 pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~ 359 (690)
T KOG1243|consen 286 PEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKY--ID 359 (690)
T ss_pred hHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHHHHHHHhHHHH--hh
Confidence 334455566777776665444 12223333333333111111 4557899999999999888776443333222 12
Q ss_pred chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcC--CchHHHHHHHHHHHh
Q 009320 336 ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLA 412 (537)
Q Consensus 336 ~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~--~~~~~~al~~L~nLa 412 (537)
..-..+.+..+++.+..-+.+.++.+++.++..+..|+.- ..+ .+....+..|-.+-.+ +..+....-+|..++
T Consensus 360 ~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 360 HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---hhcHHHHHHHHhhCccccCcccccceeeecccc
Confidence 2334566677899999999999999999999888776541 111 1122233333333222 223333322332222
Q ss_pred cChhhHHHHHhCCc-HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHH
Q 009320 413 ASNEGRSAILDANG-VSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAK 491 (537)
Q Consensus 413 ~~~~~r~~i~~~g~-I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~ 491 (537)
..- +.....++ +....+-+++ .-...+..++.+|+..+..-+. ..+ ...+++.+.-+..+.+..++..|.
T Consensus 437 ~~l---~~~~R~~vL~~aftralkd---pf~paR~a~v~~l~at~~~~~~-~~v--a~kIlp~l~pl~vd~e~~vr~~a~ 507 (690)
T KOG1243|consen 437 PHL---AASVRKRVLASAFTRALKD---PFVPARKAGVLALAATQEYFDQ-SEV--ANKILPSLVPLTVDPEKTVRDTAE 507 (690)
T ss_pred ccc---chhhhccccchhhhhhhcC---CCCCchhhhhHHHhhcccccch-hhh--hhhccccccccccCcccchhhHHH
Confidence 221 11112222 3344444544 3344577777777776664321 122 234566666666666666776666
Q ss_pred HHHHH
Q 009320 492 RILEM 496 (537)
Q Consensus 492 ~lL~~ 496 (537)
..++.
T Consensus 508 ~~i~~ 512 (690)
T KOG1243|consen 508 KAIRQ 512 (690)
T ss_pred HHHHH
Confidence 66543
No 317
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.17 E-value=64 Score=38.24 Aligned_cols=128 Identities=23% Similarity=0.230 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCHHHH
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFVPLL 309 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v~~L 309 (537)
.++++.|..|.-+|..+.--+.+. ++ --.|.|+..+. ++++.++.+++.+++-|+.. +...+.. -+.|
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~-----T~~L 1003 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW-----TEHL 1003 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccccchh-----hHHH
Confidence 367889988888888776333222 22 23788988886 78999999999999988863 3222222 3577
Q ss_pred HHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 310 IDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
...|...++.+|..|..+|..|..++. |--.|.+..+..+|.+++++++.-|-...-.|+
T Consensus 1004 y~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1004 YRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 788999999999999999999976653 334688889999999988877666653333343
No 318
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=68.17 E-value=1.6e+02 Score=30.72 Aligned_cols=232 Identities=17% Similarity=0.160 Sum_probs=117.9
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHH-HHcccCcchhhHH
Q 009320 265 LSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS-GSEESQEHAAGAL-FSLALEDENKMAI 341 (537)
Q Consensus 265 i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L-~~Ls~~~~~k~~I 341 (537)
|..+++-+. +....++..++--|..-..++.-+..+...|.++.+++.+.. ++......++.++ +-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 444444444 345567888877777777788889999999999999999854 3332444444444 4454444444443
Q ss_pred hhcCchHHHHHHhccCCH-HHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcC------C-----chHHHHHHHHH
Q 009320 342 GVLGALQPLMHALRAESE-RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKS------G-----ESTSRVLLILC 409 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~------~-----~~~~~al~~L~ 409 (537)
.+.+.+..++.++.-... ......- .....+-.++. ...+..+-..+.. . +.+.-++.+|.
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le 175 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE 175 (361)
T ss_pred hchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence 345555555777761100 0000000 00000111111 1122222222210 0 11222555555
Q ss_pred HHh-----------c----ChhhHHHHHhCCcHHHHHHHHhc---cCC----------CCHHHHHHHHHHHHHhhcCChH
Q 009320 410 NLA-----------A----SNEGRSAILDANGVSILVGMLRE---SGS----------DSEATRENCVAALFALGHGNLR 461 (537)
Q Consensus 410 nLa-----------~----~~~~r~~i~~~g~I~~Lv~lL~~---~~~----------~~~~~~e~A~~~L~~L~~~~~~ 461 (537)
.+| . .+-.++.+.+.|++..+++++.. ... .+-..-+.++.+|-+....+..
T Consensus 176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~ 255 (361)
T PF07814_consen 176 SLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEE 255 (361)
T ss_pred HHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 553 1 11236667778889999998762 000 0123457788888887765544
Q ss_pred HHHHHHH--CCcHHHHH-HHHHhCCHHH---HHHHHHHHHHhhcCCCC
Q 009320 462 FKGLAKE--ARAAEVLR-EVEERGSQRA---KEKAKRILEMLKGREDD 503 (537)
Q Consensus 462 ~~~~i~~--~g~i~~L~-~ll~~~s~~~---k~~A~~lL~~L~~~~~e 503 (537)
.+..... .+....+. .+.....+.+ ...+.++|-+++.+.++
T Consensus 256 nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 256 NQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence 4443332 23333333 3344444444 45566666677766554
No 319
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=67.85 E-value=1.1e+02 Score=34.84 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHHHhhc-ChhhHHHHHhcCcHHHHHHHhc---CCchHHHHHHHHHHHhcChhhHHHHHhCCcHH--HHHHHHhccCCCC
Q 009320 368 ALYHLTL-IQSNRVKLVKLNAVATLLTMVK---SGESTSRVLLILCNLAASNEGRSAILDANGVS--ILVGMLRESGSDS 441 (537)
Q Consensus 368 aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~---~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~--~Lv~lL~~~~~~~ 441 (537)
+|+++.. .++++..+++.|++..+...+. ..+...+++++|.|++...+.+..+.....+. .+-.++.. -.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~--w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNK--WDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--cch
Confidence 7788776 6789999999999999999997 34567779999999998776555443222222 33334433 123
Q ss_pred HHHHHHHHHHHHHhhcC
Q 009320 442 EATRENCVAALFALGHG 458 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~ 458 (537)
.+.-..|+++|..+...
T Consensus 572 ~ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 572 IERSYNAASILALLLSD 588 (699)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 36667777888777764
No 320
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.73 E-value=28 Score=31.89 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCC--hHHHHHHHHccC-CHHHHHHHHHHHHHhcC----CCc
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPN--LLSALRNLVVSR-YSIVQTNAVASLVNLSL----EKK 295 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~----~~~ 295 (537)
+..+.+.|++.+.+.+..++..++.....+. ...+.+.+ -+..|+.+|+.. +..+.+.++.+|..|-. .++
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567788889999999999999998886432 23343322 467777888764 45667777776665543 344
Q ss_pred cHHHHHh---cCCHHHHHHHHccCCHHHHHHHHHHHHHc
Q 009320 296 NKVLIVR---SGFVPLLIDVLKSGSEESQEHAAGALFSL 331 (537)
Q Consensus 296 ~k~~i~~---~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~L 331 (537)
....+.- .+.++.++.++.. ....+.+..+|..+
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 4555543 2456666666654 34445555555554
No 321
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=67.46 E-value=32 Score=30.64 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVS------RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.++|.+.++.++..|+..|-.+.+.. ......+...+.+.-|++++.. .+..|+...+..|..-+.
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999998765 4567778888999999999853 467899998888876553
No 322
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.33 E-value=1.4e+02 Score=29.69 Aligned_cols=212 Identities=13% Similarity=0.035 Sum_probs=116.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
|=..|.+++...|.+|+..|......-+... ....-+..|+.++.+ .+......++..|..|.....-....+ .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-V 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-H
Confidence 4557788999999999999887654332211 122225666666543 344444445666655553221111110 0
Q ss_pred CCHHHHHHHHc--cCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhh
Q 009320 304 GFVPLLIDVLK--SGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAE-SERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 304 g~v~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n 378 (537)
..+..+.+-.. +-....|..+..+|..|..+. +..+.. .+.+..++.++... +|+-...+...+..+...-+
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 11222222111 123456777777777775443 233332 35777888888765 78766666666555443211
Q ss_pred HHHHHhcCcHHHHHHHhc------------CC-c-hHHH-HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHH
Q 009320 379 RVKLVKLNAVATLLTMVK------------SG-E-STSR-VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEA 443 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~------------~~-~-~~~~-al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~ 443 (537)
. ...+.-|.+.+. ++ . ..+. .......|+..+... .-+++.|++-|.+ ++..
T Consensus 157 ----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s---~~~~ 223 (262)
T PF14500_consen 157 ----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDS---TSPS 223 (262)
T ss_pred ----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcC---CCcH
Confidence 1 344445555442 11 1 2223 444444555555332 3456888888887 7888
Q ss_pred HHHHHHHHHHHhhc
Q 009320 444 TRENCVAALFALGH 457 (537)
Q Consensus 444 ~~e~A~~~L~~L~~ 457 (537)
++..++.+|...+.
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 323
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=67.13 E-value=1.8 Score=36.30 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=29.9
Q ss_pred CCCCCCCccccccccccccCCeec--CCCccccHHHHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVV--STGQTFDRVSVQ 56 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~--~~G~ty~r~~i~ 56 (537)
..+.+.++-.|++|++-+.+++.. ||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 346677788899999999988764 999999998874
No 324
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=66.44 E-value=1.8e+02 Score=30.74 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-----CHHHHHHHHHHHHHhcC-CCccHHHH-HhcCCH
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-----YSIVQTNAVASLVNLSL-EKKNKVLI-VRSGFV 306 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~v~~~a~~~L~nLs~-~~~~k~~i-~~~g~v 306 (537)
+..+..+|+++|.|+-..+...+....+......+.+.+... ...++..=+..|.-|.. ....+.++ ++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 457788899999999999999988888877776666655321 22445555666666654 44556555 478899
Q ss_pred HHHHHHHcc
Q 009320 307 PLLIDVLKS 315 (537)
Q Consensus 307 ~~Lv~lL~~ 315 (537)
+.+...|..
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 998888864
No 325
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.40 E-value=1.5e+02 Score=29.44 Aligned_cols=214 Identities=17% Similarity=0.150 Sum_probs=118.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcc----ChHHHHHhh------cC-ChHHHHHHHHcc--CCHHHHHHHHHHHHHh
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRT----NEELRVSIC------TP-NLLSALRNLVVS--RYSIVQTNAVASLVNL 290 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~----~~~~r~~i~------~~-g~i~~Lv~lL~s--~~~~v~~~a~~~L~nL 290 (537)
+..+..|.+..+.+-..|++.|..+-.. ++..+..+. .. |..+.|..++-. .+....+.++..|..|
T Consensus 10 W~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L 89 (262)
T PF14225_consen 10 WTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRL 89 (262)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHH
Confidence 5677888888888888888888766422 234444442 12 444444444422 1233445566666666
Q ss_pred cCCCc--------cHHHHHhcCCHHHHHHHHccCC----HHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-
Q 009320 291 SLEKK--------NKVLIVRSGFVPLLIDVLKSGS----EESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE- 357 (537)
Q Consensus 291 s~~~~--------~k~~i~~~g~v~~Lv~lL~~~~----~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~- 357 (537)
...+. ++-.+.=.+.+|.++.-+..++ .+....+|..|..++.... ...+..++.....+
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~ 162 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGR 162 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcC
Confidence 54221 3333333455677777777666 1334456677777763321 12233333333332
Q ss_pred ---CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHH
Q 009320 358 ---SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVG 432 (537)
Q Consensus 358 ---~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~ 432 (537)
...-....+..|+.-... -.+...+-.|+++|..+. .+.+++.+|..+-...+.+.. ...+.+..|++
T Consensus 163 fr~~~dfl~~v~~~l~~~f~P------~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllr 235 (262)
T PF14225_consen 163 FRDKDDFLSQVVSYLREAFFP------DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLR 235 (262)
T ss_pred CCCHHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHH
Confidence 223344455554432211 123456777888887654 567789999888776655444 33456889999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 433 MLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 433 lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+|.. + .-..|+.+|-.+..
T Consensus 236 lL~t---~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 236 LLQT---D---LWMEALEVLDEIVT 254 (262)
T ss_pred HhCC---c---cHHHHHHHHHHHHh
Confidence 9976 2 24456666666544
No 326
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=65.35 E-value=4.3 Score=47.42 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=36.6
Q ss_pred cccccccccc-----ccCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSL-----MFDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
.=.|.||++= .-||-+. .||.-.||.|.+-=.++|+..||+|+.+..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3489999874 4445443 789999999997666778889999997765
No 327
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=65.30 E-value=2e+02 Score=30.89 Aligned_cols=141 Identities=15% Similarity=0.145 Sum_probs=80.5
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHH-HHHHhhcChhhHHHHH
Q 009320 306 VPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSAL-ALYHLTLIQSNRVKLV 383 (537)
Q Consensus 306 v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~-aL~nLs~~~~n~~~iv 383 (537)
+..++.+|.. .+.-.++.|.++|..++.++..+-.=...-++..+++.-.+..+.+...|.. ++.-+++....+...
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~- 409 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV- 409 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH-
Confidence 4577888887 5667888999999998877654322222334555666655555555555554 444455543322211
Q ss_pred hcCcHHHHHHHhc--CCchHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 384 KLNAVATLLTMVK--SGESTSRVLLILCNLAASN--EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 384 ~~g~v~~Lv~lL~--~~~~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
.+..++. +......++..+..|+..- +--..++ ....|.+++...+ .+..+|..|+.+|..+..
T Consensus 410 ------~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S---~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 410 ------NISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------HHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcC---chHHhhhhHHHhHHHHHH
Confidence 1222222 2212222344445554422 1111222 4667888888877 788899999999998875
No 328
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=64.59 E-value=35 Score=29.97 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~ 292 (537)
++.|-+.|.+.++.++..|+..|-.+.+.. ......+....++..|+.++... .+.++..++..+..-+.
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999874 56677788888999999988753 23488888888876654
No 329
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=64.46 E-value=5.3 Score=33.62 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCCCCCC-ccccccccccccCCeecCCC------ccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 21 NPKQPPK-EFLCPVSGSLMFDPVVVSTG------QTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 21 ~~~~~p~-~~~CpI~~~~m~dPV~~~~G------~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
..+.-|+ .+.|||++++=..=|.+... .-||..++.+....|. +-|.+|.++...
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~s 93 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPS 93 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChh
Confidence 4555555 78999999999999987332 4699999999988853 668899888763
No 330
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.87 E-value=4.5 Score=41.16 Aligned_cols=47 Identities=13% Similarity=-0.120 Sum_probs=37.3
Q ss_pred ccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
--.|=||+.=-+|=|++||-|. .|..|-+... -....||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 5789999999999999999986 5888876533 223469999998754
No 331
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.40 E-value=2.9e+02 Score=31.39 Aligned_cols=114 Identities=18% Similarity=0.070 Sum_probs=75.5
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
|.+-.|++...+++..|+-..+.+|..+.........-+-.+....|...|....+.+|..|+.+|..+-..+.+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 4445555555678889999999999888864333333344466677777777778899999999998885332110
Q ss_pred hcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHHHH
Q 009320 343 VLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVKLV 383 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv 383 (537)
+-.++..++.+++++ ++++++.|+ .|++........++
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIV 199 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHH
Confidence 123566778888765 778888765 44555444444444
No 332
>PLN02436 cellulose synthase A
Probab=60.99 E-value=6.6 Score=45.85 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=37.0
Q ss_pred Ccccccccccc-----ccCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSL-----MFDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
..-.|.||+|= .-||-+. .||.-.||.|.+-=.++|+..||+|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34489999864 3445443 689999999997667788889999998765
No 333
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.90 E-value=9.6 Score=40.05 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=37.7
Q ss_pred cccccccc-ccccCCe---ecCCCccccHHHHHHHHHc----CCC-CCC--CCCCCCCCC---CCcccHHHHHHHHHH
Q 009320 28 EFLCPVSG-SLMFDPV---VVSTGQTFDRVSVQVCREL----GFL-PDL--ENGFKPDFS---TVIPNLAMKQTILNW 91 (537)
Q Consensus 28 ~~~CpI~~-~~m~dPV---~~~~G~ty~r~~i~~~~~~----~~~-~cp--~~~~~~~~~---~l~pn~~l~~~i~~~ 91 (537)
...|.||. +.+...- +.-|||-||..|+.++++- +.. .|| .|...++.. .+.|+ .++.+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~ 222 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQR 222 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHH
Confidence 46799999 3322211 5679999999999998863 222 476 365555542 34443 344444433
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.77 E-value=4.8 Score=45.38 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=32.8
Q ss_pred cccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGF 71 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~ 71 (537)
=.|..|.-...=|++ --|||+|-+.|.+ ++..-||.|..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 478888888888987 4999999999987 55668999965
No 335
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.64 E-value=50 Score=28.97 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=56.3
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHh---CCHHHHHHHHHHHHHhhcCC
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEER---GSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~---~s~~~k~~A~~lL~~L~~~~ 501 (537)
++..|-+-|.. +++.++-.|+.+|-.+..+ +..+...+.....+..|+.++.. .++.+|+++..++......-
T Consensus 38 a~raL~krl~~---~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKY---GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35677777776 7899999999999988884 45576766666777778888764 47899999999998877553
No 336
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=60.59 E-value=6.7 Score=32.50 Aligned_cols=27 Identities=4% Similarity=-0.153 Sum_probs=23.1
Q ss_pred CCCccccHHHHHHHHHcCCCCCCCCCCC
Q 009320 45 STGQTFDRVSVQVCRELGFLPDLENGFK 72 (537)
Q Consensus 45 ~~G~ty~r~~i~~~~~~~~~~cp~~~~~ 72 (537)
.|-|.|--.||.+|++.. ..||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlktr-~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR-NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc-CcCCCcCcc
Confidence 688999999999999984 479988764
No 337
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=58.69 E-value=41 Score=27.62 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...+..|.++.+.+|.++...|..|....+ ...+....++..+...|++.++-+-.+|...|..|+..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 445566777778899999999999876665 22222356777888888888888889999988888753
No 338
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=57.77 E-value=4.6 Score=38.92 Aligned_cols=40 Identities=8% Similarity=-0.057 Sum_probs=29.1
Q ss_pred cCCe-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 39 FDPV-VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 39 ~dPV-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
.||- ++.|+|.||-.|...-.. ..||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc
Confidence 4554 579999999999643221 269999999877667666
No 339
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=56.79 E-value=2.6e+02 Score=29.33 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=23.5
Q ss_pred HhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 411 LAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 411 La~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
|..++..-...++.-..+.+..+|.........+.-.+...|..++...
T Consensus 230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~ 278 (427)
T KOG2842|consen 230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDS 278 (427)
T ss_pred HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcc
Confidence 4444444333333323455555554411134444555666677777643
No 340
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=56.48 E-value=7.5 Score=45.35 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=36.3
Q ss_pred ccccccccc-----ccCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSL-----MFDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 29 ~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
-.|.||++= .-||-+. .||.-.||.|.+-=.++|+..||+|+.+..
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 479999874 4456543 788999999997666778889999998765
No 341
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=56.42 E-value=8.3 Score=38.30 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=33.8
Q ss_pred ccccccccccc----cCCeecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 009320 28 EFLCPVSGSLM----FDPVVVSTGQTFDRVSVQVCRELGFLPDLENGF 71 (537)
Q Consensus 28 ~~~CpI~~~~m----~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~ 71 (537)
++-||||.+-+ .+|..++|||+--..|.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 45599998764 678889999998877776666666 89999965
No 342
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.09 E-value=3.2e+02 Score=30.32 Aligned_cols=120 Identities=19% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 292 LEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 292 ~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
.+++. ..++. |.+.-+++-+.+.+..+|...+.+|..++..-..-....-.+.+..|.+-+.+..+.++..|+.+|..
T Consensus 81 ~dpeg-~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 81 DDPEG-EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY 158 (885)
T ss_pred CChhh-hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34444 33333 45556666666778889999999998876442211112223455555555555567789999999887
Q ss_pred hh---cChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHH
Q 009320 372 LT---LIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSA 420 (537)
Q Consensus 372 Ls---~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~ 420 (537)
+- .+++|+ .+..|+.+++.+...+-=-.+|.|+...+..+..
T Consensus 159 ~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~ 203 (885)
T COG5218 159 YQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPC 203 (885)
T ss_pred HHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchh
Confidence 54 445554 3345666666443222222344455554443333
No 343
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=55.95 E-value=5.4 Score=28.80 Aligned_cols=14 Identities=36% Similarity=1.101 Sum_probs=12.1
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|+.
T Consensus 29 ~~Lp~~w~CP~C~a 42 (50)
T cd00730 29 EDLPDDWVCPVCGA 42 (50)
T ss_pred hHCCCCCCCCCCCC
Confidence 47899999999974
No 344
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.73 E-value=1.4e+02 Score=33.68 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=65.0
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHh------cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh---
Q 009320 347 LQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVK------LNAVATLLTMVKSGE--STSRVLLILCNLAASN--- 415 (537)
Q Consensus 347 l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~------~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~--- 415 (537)
...++++|.+.+-..+-.-+.++.|+...-.-..+|++ ...+..|++-+.+.. .+.+|+.++..++..+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 56778888888777777777788887754333335554 234444444444443 6778998888887643
Q ss_pred -hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 416 -EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 416 -~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
.-|+.+. ..+++-|.+ .+.-++.+|+..+..|..
T Consensus 381 ~~~r~ev~-----~lv~r~lqD---rss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGRRHEVI-----RLVGRRLQD---RSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHH-----HHHHHHhhh---hhHHHHHHHHHHHHHHHh
Confidence 2344333 455555655 566777788877777654
No 345
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=54.72 E-value=98 Score=34.80 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=83.4
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHcccCcchhhH
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDV-LKSGSEESQEHAAGALFSLALEDENKMA 340 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 340 (537)
..++|+|..-+.+.+..+|+.++..+-.++..-+ ...+..-++|.|-.+ +...+..++.+++.++..+...- .+..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-D~~~ 464 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-DKAA 464 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-HHHH
Confidence 4457888888888899999999999888876322 444555566777665 44556788888888888877111 1111
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE 399 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~ 399 (537)
+ ...+.++.+..+..++.+....+.+..++.....++....-..++|.++.+.-.+.
T Consensus 465 v--~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 465 V--LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred h--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 1 12344444555555777766666666666654444434444567777777665443
No 346
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=54.50 E-value=90 Score=32.27 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCCcc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-------YSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-------~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+.+++.+.+.+...+..|+..|+.-+.- .-++|.++.++... +.......+..+..|..++..
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD~gl----------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTDPGL----------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCc----------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 5666666667777777666665543321 12467777766432 445556666666677666543
Q ss_pred HHHHHhcCCHHHHHHHHcc----------CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC
Q 009320 297 KVLIVRSGFVPLLIDVLKS----------GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~----------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~ 357 (537)
....--.-.+|+++..+-. ....+|+.|+.+|..++..-.....-....++..|.+.|.+.
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 3222222366777765521 235799999999998874432222212233344555555443
No 347
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=54.27 E-value=14 Score=25.63 Aligned_cols=39 Identities=8% Similarity=-0.022 Sum_probs=22.4
Q ss_pred cccccccccCCeecC---CCccccHHHHHHHHHcCCCC-CCCC
Q 009320 31 CPVSGSLMFDPVVVS---TGQTFDRVSVQVCRELGFLP-DLEN 69 (537)
Q Consensus 31 CpI~~~~m~dPV~~~---~G~ty~r~~i~~~~~~~~~~-cp~~ 69 (537)
|-+|.+|..-=+.-+ |+-.+=..|+..+|.....+ ||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777766666655 88889999999998876554 9876
No 348
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=53.82 E-value=5.5 Score=28.33 Aligned_cols=14 Identities=36% Similarity=1.101 Sum_probs=9.1
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|.-
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 47899999999974
No 349
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=53.38 E-value=3.1 Score=39.72 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=35.6
Q ss_pred Ccccccccc-ccccCCee----c-CCCccccHHHHHHHHHcCCCCCC--CCCCC
Q 009320 27 KEFLCPVSG-SLMFDPVV----V-STGQTFDRVSVQVCRELGFLPDL--ENGFK 72 (537)
Q Consensus 27 ~~~~CpI~~-~~m~dPV~----~-~~G~ty~r~~i~~~~~~~~~~cp--~~~~~ 72 (537)
.+-.||||+ +.+-.|=+ - .|=|..|-+|+-+-|..|..+|| -|++.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 456899997 45666643 2 49999999999999999988998 56543
No 350
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=53.31 E-value=46 Score=29.46 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHccC-CHH---HHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVSR-YSI---VQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~-~~~---v~~~a~~~L~nLs~ 292 (537)
++.|-+.|.+.++.++..|+..|-.+.++. +..+..+.....+..|.+++... ... |++.++..|...+.
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999876 56677788888999999988643 333 88888888876553
No 351
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=52.47 E-value=2.8e+02 Score=32.28 Aligned_cols=175 Identities=14% Similarity=0.037 Sum_probs=97.7
Q ss_pred HHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHH
Q 009320 312 VLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVA 389 (537)
Q Consensus 312 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~ 389 (537)
-+.+.+..-|..|+.-+........ +.... -.+.+..++.+... .+..+...|+..|-.++..-..-..=...++.+
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p 339 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFP 339 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcc
Confidence 3444556666666666665544443 11111 23444444555433 356677777777777764321112333356778
Q ss_pred HHHHHhcCC--chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh---HHHH
Q 009320 390 TLLTMVKSG--ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL---RFKG 464 (537)
Q Consensus 390 ~Lv~lL~~~--~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~---~~~~ 464 (537)
.+++.+.+. .+.+-++.++...+... .-...++.+..++.. ..+..+..+...|........ ..+.
T Consensus 340 ~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~---knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 340 SLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKG---KNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred hHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcC---CChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 888877653 34444555554443310 112334666777777 788888887777766655221 1222
Q ss_pred HHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 465 LAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 465 ~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.+ .++++.++....+.+..+|..|..++..+-
T Consensus 411 t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 411 TV--KTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hH--HHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 22 356777888888888888888887664433
No 352
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=51.85 E-value=46 Score=38.39 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=83.6
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH-h-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhh
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV-R-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM 339 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~-~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~ 339 (537)
...+|.|++.....+...+..=+.+|.++-.+-. +..+. + ...+|.|++.|.-.+..+|..+..+|.-+......-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 4568888888775444444545555555444322 22222 2 4567888889988898888888887765543222111
Q ss_pred HHhhcCchHHHHHHhccCC---HHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCc
Q 009320 340 AIGVLGALQPLMHALRAES---ERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE 399 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~~~---~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~ 399 (537)
.---.-.+|.++.+=++.+ ..++..|+..|..|.. .+.+.-.-.+-.++..|...|.+..
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 1111235666666655443 4577888888888876 5555555556677778888887654
No 353
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=51.56 E-value=3.4e+02 Score=29.22 Aligned_cols=141 Identities=16% Similarity=0.070 Sum_probs=82.2
Q ss_pred hHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHH-HHHHHHHhcChhhHHHHH
Q 009320 347 LQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRV-LLILCNLAASNEGRSAIL 422 (537)
Q Consensus 347 l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~a-l~~L~nLa~~~~~r~~i~ 422 (537)
+..++++|.+ .++..++.|+..|..++.+...+..=-.+-+|..+++.-.+.. +...| =.++..++...
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~------- 403 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL------- 403 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-------
Confidence 4567788887 5777889999999999887655432222345556655544322 11111 11222222211
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGN--LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~--~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
-...|..+..++.. .+...--.++..+..|+..= +..-.++ ..+.|.+++--.+.+..+|+.|+.+|-.+..
T Consensus 404 P~~~I~~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 404 PLQCIVNISPLILT---ADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred chhHHHHHhhHHhc---CcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 12234555565554 34444555666777777632 2222232 4667788888888889999999998855543
No 354
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.35 E-value=76 Score=35.86 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=12.3
Q ss_pred hHHHHHHHh-cCCCHHHHHHHHHH
Q 009320 222 EEEELSKKL-RSADIALQEEGVIA 244 (537)
Q Consensus 222 ~~~~Lv~~L-~s~~~~~~~~A~~~ 244 (537)
+.+.+|+.| .+.++-.+...+..
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t 542 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYT 542 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHH
Confidence 345666666 45555555444433
No 355
>PF14353 CpXC: CpXC protein
Probab=51.06 E-value=12 Score=32.57 Aligned_cols=47 Identities=19% Similarity=0.051 Sum_probs=31.5
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcC--CCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELG--FLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~ 74 (537)
+..||-|+.-|.=.|-..---+-+....++-++.. ..+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 36799999888877765555555666666655332 237999998764
No 356
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=50.63 E-value=17 Score=35.89 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCCCCCccccccccccccC-Ce-------------ecCCCccccHHHHHH-HHHc--CCC--CCCCCCCCCCCCCCcccH
Q 009320 22 PKQPPKEFLCPVSGSLMFD-PV-------------VVSTGQTFDRVSVQV-CREL--GFL--PDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~d-PV-------------~~~~G~ty~r~~i~~-~~~~--~~~--~cp~~~~~~~~~~l~pn~ 82 (537)
+.+-+..|.|++|...+.- |. -.-||.-|.|..+.+ +++. |.+ .||.|++-|.++ -
T Consensus 155 ~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR-----S 229 (279)
T KOG2462|consen 155 SLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR-----S 229 (279)
T ss_pred cccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch-----H
Confidence 4455889999999988743 11 125677777776655 5543 323 599999988774 3
Q ss_pred HHHHHHHH
Q 009320 83 AMKQTILN 90 (537)
Q Consensus 83 ~l~~~i~~ 90 (537)
+||.-++.
T Consensus 230 NLRAHmQT 237 (279)
T KOG2462|consen 230 NLRAHMQT 237 (279)
T ss_pred HHHHHHHh
Confidence 45666553
No 357
>PLN02400 cellulose synthase
Probab=50.35 E-value=8.2 Score=45.22 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=36.6
Q ss_pred Ccccccccccc-----ccCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSL-----MFDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
..=.|.||+|= .-||-+. .||.-.||.|.+-=.++|+..||+|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34489999873 3445443 789999999996656778889999998775
No 358
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.27 E-value=4e+02 Score=30.45 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=64.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHcccCcchhhHH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDV-LKSGSEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
++=+.+-+++.+.++-++...+-++..--.... ..++|..|+++ .+..+.++|..|+-+|.-+...+.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp----- 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----- 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----
Confidence 344444455566666666555443321100111 12356677776 567789999999988877655443
Q ss_pred hhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhH
Q 009320 342 GVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
..++..|.+|... ++.++--++.||.-.|....++
T Consensus 588 ---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 588 ---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred ---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 3566778888765 8889988888888777655544
No 359
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.89 E-value=3e+02 Score=28.14 Aligned_cols=152 Identities=15% Similarity=0.076 Sum_probs=107.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC-CC-ccHHHHHh-cC-CHHHHHHHHccC----C---------HHHHHHHHHH
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSL-EK-KNKVLIVR-SG-FVPLLIDVLKSG----S---------EESQEHAAGA 327 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~-~~k~~i~~-~g-~v~~Lv~lL~~~----~---------~e~~~~Aa~~ 327 (537)
+..+-+.|.+....+...++..|..+.. +. .....+.. -+ -.+.|.+++... . +.+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888888888888899999999988 44 44555554 22 345666666321 1 2788888888
Q ss_pred HHHcccCc--chhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHH-hhcC----hhhHHHHHhcCcHHHHHHHhcC--
Q 009320 328 LFSLALED--ENKMAIG-VLGALQPLMHALRAESERTRHDSALALYH-LTLI----QSNRVKLVKLNAVATLLTMVKS-- 397 (537)
Q Consensus 328 L~~Ls~~~--~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~----~~n~~~iv~~g~v~~Lv~lL~~-- 397 (537)
+..+.... ..+..+. +.+.+..+.+-|..+++.+....+.+|.. +..+ ...+..+....++..|+.+...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 77765433 3555555 46779999999999888899999988885 4332 3456677777888889886652
Q ss_pred C----chHHHHHHHHHHHhcChh
Q 009320 398 G----ESTSRVLLILCNLAASNE 416 (537)
Q Consensus 398 ~----~~~~~al~~L~nLa~~~~ 416 (537)
. ...+.+-..|..+|..+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 2 346778889989887553
No 360
>PLN03086 PRLI-interacting factor K; Provisional
Probab=49.61 E-value=18 Score=39.85 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCCCcccccccccccc------------CCeecCCCccccHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMF------------DPVVVSTGQTFDRVSVQVCR 59 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~------------dPV~~~~G~ty~r~~i~~~~ 59 (537)
++++++.|+.|.+-|. -|+.-+||..+.|..+.++.
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~ 496 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQ 496 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhh
Confidence 3445566666655442 23444455555555555544
No 361
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.34 E-value=1.2e+02 Score=32.76 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCcc---HH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV-VSRYSIVQTNAVASLVNLSLEKKN---KV 298 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~~~~---k~ 298 (537)
+..+.....+.+...+..|++.|.+.+...+..... ...-.+..++.-| ...+.+|+-+++.+|..+...-.+ ..
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t-h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~ 338 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT-HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLES 338 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH-hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhh
Confidence 345555556667777888999999888653322221 1222355555544 445688888888888766542222 22
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhH--Hhh--cCchHHHHHHhccCCHHHHH
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMA--IGV--LGALQPLMHALRAESERTRH 363 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~--I~~--~g~l~~Lv~lL~~~~~~~~~ 363 (537)
.+. .+.-.+..++.+.+++.|.+|..++..|+.....+.. ..+ .+.+.+|+..|.+.++.+-.
T Consensus 339 ~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ 405 (533)
T KOG2032|consen 339 YLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR 405 (533)
T ss_pred hch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH
Confidence 222 2334566678888999999998888888755433222 221 23444566666766665433
No 362
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.86 E-value=11 Score=28.59 Aligned_cols=13 Identities=15% Similarity=0.012 Sum_probs=9.4
Q ss_pred cccHHHHHHHHHc
Q 009320 49 TFDRVSVQVCREL 61 (537)
Q Consensus 49 ty~r~~i~~~~~~ 61 (537)
-|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999865
No 363
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=47.99 E-value=1.9e+02 Score=26.23 Aligned_cols=140 Identities=12% Similarity=0.030 Sum_probs=69.3
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 224 EELSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 224 ~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+.|++.|+. .+...+.++++.|..|-.-++...+.+....- .- .-...+...... .+.+....+. -+...-
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~~---~l~~~~~~~~-~ee~y~ 84 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTDI---SLPMMGISPS-SEEYYP 84 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchhh---HHhhccCCCc-hHHHHH
Confidence 556777754 56889999999999887666554443321110 00 000001111111 1222222111 122222
Q ss_pred cCCHHHHHHHHccCCH-HHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 303 SGFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
..++..|+++|++.+. .-...++.++.++-.....+..-.=..++|.++..++..++..++.-..-|..
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2356788888887652 22334455555443333333211124578899999987766555554444433
No 364
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=47.90 E-value=1.1e+02 Score=25.72 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=49.0
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHH-----H-HhCCHHHHHHHHHHHHHhh
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREV-----E-ERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~l-----l-~~~s~~~k~~A~~lL~~L~ 498 (537)
+..|.+-|.+ .++.++-.|+.+|-.|+. +++.+...+........++.+ . ...+..+|+++..++...+
T Consensus 39 ~~~l~kRl~~---~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 39 VDAIKKRINN---KNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHhcC---CcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 4555566655 589999999999999998 566777777666555555443 1 1236789999999987654
No 365
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.79 E-value=2.1e+02 Score=32.86 Aligned_cols=56 Identities=13% Similarity=-0.042 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCC-CccHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 278 IVQTNAVASLVNLSLE-KKNKVLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 278 ~v~~~a~~~L~nLs~~-~~~k~~i~-~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
.+......+|..++.. ++....+. +.+...+++.++-+++.++.+.|..+|.....
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 4556667788888874 44444554 57889999999999999999999999987764
No 366
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.79 E-value=16 Score=23.68 Aligned_cols=10 Identities=10% Similarity=-0.390 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q 009320 63 FLPDLENGFK 72 (537)
Q Consensus 63 ~~~cp~~~~~ 72 (537)
...||+|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 3479999764
No 367
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.79 E-value=9 Score=40.60 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=49.5
Q ss_pred CCCCCccccccc-cccccCCeec--CCCccccHHHHHHHHHcCCC-CCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVS-GSLMFDPVVV--STGQTFDRVSVQVCRELGFL-PDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 23 ~~~p~~~~CpI~-~~~m~dPV~~--~~G~ty~r~~i~~~~~~~~~-~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
...|+++.||+| .+.|.|-+++ .|..+||-.||.+.+..... -|..|.. ....+.|+..++..+..-
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRI 284 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHH
Confidence 578999999999 9999999988 78999999999887655432 2433322 223567777777777654
No 368
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=46.72 E-value=1.5e+02 Score=26.90 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=72.8
Q ss_pred CCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 304 GFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
..++.|+.+|+.+ +..+|..+.++|..|-..|..+-....... .. ..-.+.+...... .+.+... ...-...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~--~~~~~~~~~~~~~---~l~~~~~-~~~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DS--KSSENSNDESTDI---SLPMMGI-SPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cc--cccccccccchhh---HHhhccC-CCchHHH
Confidence 3456777888765 588999999999998766665544321110 00 0000000011111 1111111 0112233
Q ss_pred HhcCcHHHHHHHhcCCchH---HHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009320 383 VKLNAVATLLTMVKSGEST---SRVLLILCNLAASN--EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~~~---~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L 455 (537)
.-.-++..|+..|++.... ..++.++.++.... .....+ ...++.++..++. .++..+|.-..-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~---~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRT---CPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHh---CCHHHHHHHHHHHHHH
Confidence 3345778888888876532 23566666655322 222222 3567888888886 4557777665555544
No 369
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=46.26 E-value=95 Score=34.93 Aligned_cols=125 Identities=19% Similarity=0.139 Sum_probs=70.2
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
.++|.|..-++..+..+++.+...+-.++..-+ ...+..-++|.|-.+... .+..++.+++.++..|. ..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~l 460 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QRL 460 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HHH
Confidence 455666666677778888888888877765544 233344566666666433 35667777777777665 222
Q ss_pred HhcCcHHHHHHHhc-----CCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhc
Q 009320 383 VKLNAVATLLTMVK-----SGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 383 v~~g~v~~Lv~lL~-----~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
-...+++.+.-++. +.......+.+..++....-++..+.-+.+++.++.+...
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 23334444444332 3334555666666665433222333335566666666554
No 370
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.07 E-value=2.2e+02 Score=35.00 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=75.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhHHh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIG 342 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~ 342 (537)
.+..++..|..+...++..|+.+|.++..-+.. .+.....-..+-.-+...+..+|+.|+.++..... .++.-.+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q-- 892 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ-- 892 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH--
Confidence 356666777777889999999999998764321 12222233344456667788899999999975432 2221111
Q ss_pred hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-------hhhHHHHHh-----cCcHHHHHH
Q 009320 343 VLGALQPLMHALRAESERTRHDSALALYHLTLI-------QSNRVKLVK-----LNAVATLLT 393 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-------~~n~~~iv~-----~g~v~~Lv~ 393 (537)
....+.+-+.+....+++.+...|+.+|.. .+.+.+|++ +|-|..|+.
T Consensus 893 ---yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 893 ---YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred ---HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHH
Confidence 122333333444567899999999998853 234455542 454777665
No 371
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=45.79 E-value=11 Score=37.10 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=34.4
Q ss_pred ccccccccccccCCeec----------------CCCccc-cHHHHHHHHHc----CCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVV----------------STGQTF-DRVSVQVCREL----GFLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~----------------~~G~ty-~r~~i~~~~~~----~~~~cp~~~~~~~ 74 (537)
.+.|+||+..|.-|=+| .||.-| ||+-+..+++. .+..|+.|++.|.
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence 47799999999999776 455555 77778777765 2346999987653
No 372
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.28 E-value=91 Score=27.53 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=55.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhC-CHH---HHHHHHHHHHHhhcCC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEERG-SQR---AKEKAKRILEMLKGRE 501 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~-s~~---~k~~A~~lL~~L~~~~ 501 (537)
+..|.+-|.. .++.++..|+.+|-.+..+ +..+...+.....+..|..++... ... +++++..+|......-
T Consensus 44 ~~~l~krl~~---~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKH---GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTT---SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4567777766 7999999999999998884 466777776677888999986643 444 8999999997776554
No 373
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=45.24 E-value=19 Score=40.51 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=34.4
Q ss_pred CCCCCCccccccccccccCCee----cC---CCccccHHHHHHHHHc
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVV----VS---TGQTFDRVSVQVCREL 61 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~----~~---~G~ty~r~~i~~~~~~ 61 (537)
....++.-.|++|..=+.+||= .+ |||.||-.||..|.++
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 4567888999999999999773 45 9999999999999876
No 374
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=44.77 E-value=4.7e+02 Score=28.89 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=56.2
Q ss_pred chHHHHHHhccC----CHHHHHHHHHHHHHhh----cChhhHHHHHhcCcHHHHHHHhcC----CchHH--HHHHHHHHH
Q 009320 346 ALQPLMHALRAE----SERTRHDSALALYHLT----LIQSNRVKLVKLNAVATLLTMVKS----GESTS--RVLLILCNL 411 (537)
Q Consensus 346 ~l~~Lv~lL~~~----~~~~~~~A~~aL~nLs----~~~~n~~~iv~~g~v~~Lv~lL~~----~~~~~--~al~~L~nL 411 (537)
.+..+.+++.+. .+.+...|+.++.+|. ...+.+...+-...++.|.+.|.+ .+..+ ..+.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 456777777754 3445555555555543 333322222333466677666642 22111 156666554
Q ss_pred hcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 412 AASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 412 a~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-. ...+..+..++......+..++..|+.+|..++.
T Consensus 474 g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~ 509 (574)
T smart00638 474 GH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAK 509 (574)
T ss_pred CC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 21 2335566666653233467899999999998875
No 375
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=43.77 E-value=1.8e+02 Score=25.85 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHH-HHHHHHh---CCHHHHHHHHHHHHHhhcCC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEV-LREVEER---GSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~-L~~ll~~---~s~~~k~~A~~lL~~L~~~~ 501 (537)
+..|.+-|.. ..++.++..|+.+|-.+.. ++..+...+.....+.- |+.++.. ....++.+...+++..+..-
T Consensus 40 ~ralkkRl~~--~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 40 VRALKKRLNG--NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4455554542 1478888889998888887 45667777777788886 8888763 34589999999998877653
No 376
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=43.31 E-value=7.6 Score=22.49 Aligned_cols=13 Identities=23% Similarity=0.733 Sum_probs=9.5
Q ss_pred cccccccccccCC
Q 009320 29 FLCPVSGSLMFDP 41 (537)
Q Consensus 29 ~~CpI~~~~m~dP 41 (537)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 5688888777765
No 377
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.92 E-value=1.6e+02 Score=31.76 Aligned_cols=147 Identities=16% Similarity=0.054 Sum_probs=81.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHH
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIG-VLGALQPL 350 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~L 350 (537)
.+++..++..|+..|.|.+..-..+..-...-.+..++.=|.+ .+.++.-.+...|..+...-.++...- =..+.-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 3456788999999999999863333222222345566654444 357777777777766653333222211 01333456
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcChh--hHHHHHh---cCcHHHHHHHhcCCc-hHHHHHHHHHHHhcChhhHHH
Q 009320 351 MHALRAESERTRHDSALALYHLTLIQS--NRVKLVK---LNAVATLLTMVKSGE-STSRVLLILCNLAASNEGRSA 420 (537)
Q Consensus 351 v~lL~~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~---~g~v~~Lv~lL~~~~-~~~~al~~L~nLa~~~~~r~~ 420 (537)
..+..+.+++.+.+|..+...|+.... -+.-..+ .+..+ |+-.|.+.. ...+|+......|...-.|++
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke 422 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKE 422 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHH
Confidence 667777788888887777666664322 2222222 22333 333344444 345577777666654444443
No 378
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=42.61 E-value=17 Score=33.34 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=16.2
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFK 72 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~ 72 (537)
.+.||+|+-++.|. ....||.|+.+
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 57899884444332 34579999864
No 379
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=41.63 E-value=35 Score=30.89 Aligned_cols=48 Identities=4% Similarity=-0.191 Sum_probs=34.5
Q ss_pred CccccccccccccCCeecCCCc-----cccHHHHHHHHHcCC-CCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQ-----TFDRVSVQVCRELGF-LPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~~~-~~cp~~~~~~~~ 75 (537)
.+-.|=||.+=-. +..-||.. ..=++|+++|+...+ ..|+.|+.++.-
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3557889987753 44567753 337899999998754 479999987754
No 380
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.92 E-value=83 Score=27.33 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=49.0
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHH-HCCcHHHHHHHHH-----hC---CHHHHHHHHHHHHHh
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAK-EARAAEVLREVEE-----RG---SQRAKEKAKRILEML 497 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~-~~g~i~~L~~ll~-----~~---s~~~k~~A~~lL~~L 497 (537)
..|.+=|.. .++.++-.|+.+|..||. +++.++..++ ....|..+.++-. .| ...++..|.+++..+
T Consensus 41 d~L~kRL~~---~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 41 EYLLKRLKR---SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHhcC---CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 566666666 678899999999999998 5556666544 3345556666533 22 347889999999887
Q ss_pred hcC
Q 009320 498 KGR 500 (537)
Q Consensus 498 ~~~ 500 (537)
-..
T Consensus 118 f~~ 120 (122)
T cd03572 118 FSY 120 (122)
T ss_pred hcc
Confidence 654
No 381
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=40.29 E-value=25 Score=27.70 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=22.3
Q ss_pred ccccccccccc-----cCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLM-----FDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 28 ~~~CpI~~~~m-----~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.-.|.||++=. -+|-+. .|+.-.||.|.+-=.+.|+..||.|+.+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 34788987632 233232 7788999999998888899999999876653
No 382
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=40.20 E-value=92 Score=26.60 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=32.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+|+.|+.-|.+.+++|...|+.+|...+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 488999999999999999999999999887766666654
No 383
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=40.17 E-value=1.1e+02 Score=31.38 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcChhhHHHHHhCC--cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 009320 403 RVLLILCNLAASNEGRSAILDAN--GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAK 467 (537)
Q Consensus 403 ~al~~L~nLa~~~~~r~~i~~~g--~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~ 467 (537)
.|+.+|..+...++.-..+...+ .+..|+++++....-...++..|+.+|..++........++.
T Consensus 241 lAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 241 LAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 36666666666667777777766 799999999885445789999999999999997655555554
No 384
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.06 E-value=1.1e+02 Score=26.78 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=55.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEERGS--QRAKEKAKRILEMLKGR 500 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s--~~~k~~A~~lL~~L~~~ 500 (537)
+..|-+-|.. .++.++-.|+.+|-.+..+ +..+...+.....+..|..++.... +.+++++..++......
T Consensus 39 ~r~l~krl~~---~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 39 VRLLKKRLNN---KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566666666 7899999999999988874 5667777778888999998876543 34999999999776654
No 385
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.99 E-value=1.4e+02 Score=33.09 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=67.1
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
|.+-.+++.+.+++..++...+.+|..+...-..-...+-.|.+..|.+.+-...+.+|..|+.+|..+-....+-..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 445556666678899999999999988886433333444457777888777767788999999998876433222111
Q ss_pred hcCchHHHHHHhccC-CHHHHHHHHHHHHHhhc
Q 009320 343 VLGALQPLMHALRAE-SERTRHDSALALYHLTL 374 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~ 374 (537)
.....|+.+++++ +.++++.|+ .|+..
T Consensus 169 --~~~n~l~~~vqnDPS~EVRr~al---lni~v 196 (885)
T COG5218 169 --RIVNLLKDIVQNDPSDEVRRLAL---LNISV 196 (885)
T ss_pred --HHHHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence 1233566666654 556666554 45443
No 386
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.84 E-value=1.9e+02 Score=24.11 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=53.9
Q ss_pred HHHHHHHHHH-HHhcCCCccHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc
Q 009320 278 IVQTNAVASL-VNLSLEKKNKVLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR 355 (537)
Q Consensus 278 ~v~~~a~~~L-~nLs~~~~~k~~i~-~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~ 355 (537)
+++..|+.-| ..+...--....++ ....+..|+..+...+....+.+...|..|...+.....+.+-|+...|-++-.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 3455555432 23333222223333 345667777777777766788889999999999888888888888877655554
Q ss_pred cCCHHHH
Q 009320 356 AESERTR 362 (537)
Q Consensus 356 ~~~~~~~ 362 (537)
.-++..+
T Consensus 82 ~~~~~~~ 88 (98)
T PF14726_consen 82 NVEPNLQ 88 (98)
T ss_pred cCCHHHH
Confidence 4444433
No 387
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=39.32 E-value=2.3e+02 Score=28.29 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHH-HHhhcCChHHHHHHHH----c--------cCCHHHHHHHHHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELR-VSICTPNLLSALRNLV----V--------SRYSIVQTNAVASLVN 289 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL----~--------s~~~~v~~~a~~~L~n 289 (537)
++.++..+++.++..+..++..|..+...-+... ..+...|..+.+-+.+ . .+...+...+..+|..
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 4678888888899999999999999986433322 2355666655554433 2 2334566666666666
Q ss_pred hc
Q 009320 290 LS 291 (537)
Q Consensus 290 Ls 291 (537)
|.
T Consensus 201 L~ 202 (282)
T PF10521_consen 201 LL 202 (282)
T ss_pred HH
Confidence 63
No 388
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=39.20 E-value=19 Score=33.98 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=35.9
Q ss_pred cccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
-.|.+|..|.-.=+-. .||..|-+.|++.+++. ...||.|+--.++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 4699999987665443 67889999999999988 6679999754443
No 389
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=39.15 E-value=2.3e+02 Score=30.74 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=72.0
Q ss_pred cCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHH----HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC--
Q 009320 385 LNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSA----ILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG-- 458 (537)
Q Consensus 385 ~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~----i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-- 458 (537)
.++|..+++.+....+.+-.+.++. +..++.+.. +.+.+.|+.|+.+|.. ..+...+.+|..+|..+..-
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p--~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSP--SYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhh
Confidence 5677777777776655555555554 333344433 4468999999999975 35778899999888887541
Q ss_pred -----------ChHHHHHHHHCCcHHHHHHHHH--hCCHHHHHHHHHHHHHhhcC
Q 009320 459 -----------NLRFKGLAKEARAAEVLREVEE--RGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 459 -----------~~~~~~~i~~~g~i~~L~~ll~--~~s~~~k~~A~~lL~~L~~~ 500 (537)
+......+.....+..|+..+- .++..+--...-++..+++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 1234455566778888888644 34444444444455777665
No 390
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.48 E-value=1.5e+02 Score=33.19 Aligned_cols=92 Identities=16% Similarity=0.099 Sum_probs=56.1
Q ss_pred ChHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccC---CHHHHHHHHHHHHHcccCc
Q 009320 263 NLLSALRNLVV----SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSG---SEESQEHAAGALFSLALED 335 (537)
Q Consensus 263 g~i~~Lv~lL~----s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~ 335 (537)
..++.|...|. ..+.+....++.+|.|+-.. ..++.|..++... +..+|..|+.+|..++...
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 34566665554 34566777788888888641 2455666666554 5778999999998774443
Q ss_pred chhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHH
Q 009320 336 ENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYH 371 (537)
Q Consensus 336 ~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~n 371 (537)
.. .+.+.|+.++.+. +.++|..|..+|..
T Consensus 556 ~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 556 PE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 22 2345677777664 56777777766544
No 391
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.47 E-value=18 Score=35.73 Aligned_cols=28 Identities=7% Similarity=-0.272 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHc------------CCCCCCCCCCCCCCC
Q 009320 49 TFDRVSVQVCREL------------GFLPDLENGFKPDFS 76 (537)
Q Consensus 49 ty~r~~i~~~~~~------------~~~~cp~~~~~~~~~ 76 (537)
-.||+|+.+||.. |...||.|++.+.-.
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 3567899999832 445899999887643
No 392
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.46 E-value=32 Score=37.00 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=31.3
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHHHHHc
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQVCREL 61 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~~ 61 (537)
.....|.||.+-..+ .+.+.|||-||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 557999999999986 778899999999999888754
No 393
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.24 E-value=6.8e+02 Score=30.23 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHH
Q 009320 442 EATRENCVAALFALGHGNLRFKG 464 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~~~~~~~ 464 (537)
..+.+.|+.+++.++..++....
T Consensus 766 ~~~~e~ais~Iy~is~~Pe~la~ 788 (1251)
T KOG0414|consen 766 FGVAEVAISAIYSISMLPEVLAT 788 (1251)
T ss_pred HHHHHHHHHHHHHHhcChHHHHH
Confidence 45789999999999998765443
No 394
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=7.1e+02 Score=28.65 Aligned_cols=118 Identities=12% Similarity=0.108 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhc--cChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc
Q 009320 237 LQEEGVIALRRLTR--TNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK 314 (537)
Q Consensus 237 ~~~~A~~~L~~L~~--~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~ 314 (537)
..+.|++.+.++.. +.+..-.-+.+.=+++.++..+.++.--++..||..+..++.+=....... .+.+.....|.
T Consensus 432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill--~aye~t~ncl~ 509 (970)
T COG5656 432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILL--EAYENTHNCLK 509 (970)
T ss_pred HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHh
Confidence 33445555554432 112222223333345666666677777788999999888854322222222 23455666777
Q ss_pred cCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhcc
Q 009320 315 SGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRA 356 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~ 356 (537)
+.+..++..|+-+|.-+..+++.-..+.+ .+.++.|+.+-+.
T Consensus 510 nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 510 NNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred cCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 77788888898888887766654333332 3445555554443
No 395
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.45 E-value=5.7e+02 Score=31.77 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
+..++..|.......+-+|+++|..+..-++.. +....+-..+-.-+.+.+..|++.|+..++.... +++.-.+..
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY 894 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYY 894 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 466777788888999999999999988554432 2233333444444456678899999999985544 344333332
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
..+..-+......+|..+..+|+.++...
T Consensus 895 -----~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 895 -----DQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred -----HHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 34444455566778888888888887543
No 396
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.40 E-value=28 Score=22.84 Aligned_cols=9 Identities=11% Similarity=-0.356 Sum_probs=6.7
Q ss_pred CCCCCCCCC
Q 009320 64 LPDLENGFK 72 (537)
Q Consensus 64 ~~cp~~~~~ 72 (537)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 478998864
No 397
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=35.64 E-value=47 Score=28.16 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHH
Q 009320 280 QTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQ 321 (537)
Q Consensus 280 ~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~ 321 (537)
....+..|..|+..++.-..+++.|+++.|+.+|.+.|.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 456677888999989888899999999999999999887763
No 398
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=35.34 E-value=29 Score=28.77 Aligned_cols=79 Identities=22% Similarity=0.307 Sum_probs=40.1
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC---CC
Q 009320 1 MGGNGKHHRWKISFFHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF---ST 77 (537)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~---~~ 77 (537)
||.-++ .|-++ -...+..+|..|.||-|...-.-- | |..+ -...+.-.|-.|++.+.- .-
T Consensus 1 MG~rr~-krr~~-----ik~~~~~L~k~FtCp~Cghe~vs~----c--tvkk-----~~~~g~~~Cg~CGls~e~ev~~l 63 (104)
T COG4888 1 MGRRRR-KRRKI-----IKRRPQVLPKTFTCPRCGHEKVSS----C--TVKK-----TVNIGTAVCGNCGLSFECEVPEL 63 (104)
T ss_pred CCcccc-ccccc-----CcccCccCCceEecCccCCeeeeE----E--EEEe-----cCceeEEEcccCcceEEEecccc
Confidence 777666 44433 123345589999999998754221 1 1111 111122357778776532 12
Q ss_pred CcccHHHHHHHHHHHHHcC
Q 009320 78 VIPNLAMKQTILNWCDTSG 96 (537)
Q Consensus 78 l~pn~~l~~~i~~~~~~~~ 96 (537)
+.|--.-..-|..+++.++
T Consensus 64 ~~~vDvYs~wvDay~eg~~ 82 (104)
T COG4888 64 SEPVDVYSAWVDAYLEGRG 82 (104)
T ss_pred ccchhHHHHHHHHHHhccc
Confidence 3343333445555555444
No 399
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=35.32 E-value=13 Score=21.19 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=7.0
Q ss_pred cccccccccccCC
Q 009320 29 FLCPVSGSLMFDP 41 (537)
Q Consensus 29 ~~CpI~~~~m~dP 41 (537)
|.||+|...|.++
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 4677777666654
No 400
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=34.28 E-value=4.7e+02 Score=27.26 Aligned_cols=138 Identities=14% Similarity=0.013 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHhhcChhhHHHHHhc---CcHHHHHHHhcCCchH-HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHH
Q 009320 358 SERTRHDSALALYHLTLIQSNRVKLVKL---NAVATLLTMVKSGEST-SRVLLILCNLAASNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 358 ~~~~~~~A~~aL~nLs~~~~n~~~iv~~---g~v~~Lv~lL~~~~~~-~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~l 433 (537)
+.+....|+.+|..+-.+++-...+-+. -.+...+..+.++... .-+-..|..|+... ....+.....+..++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCCcccchhhHHHHHHH
Confidence 4467778888888877766655444432 2556666666555432 22444444444432 11224444555666665
Q ss_pred HhccC--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC-cHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 434 LRESG--SDSEATRENCVAALFALGHGNLRFKGLAKEAR-AAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 434 L~~~~--~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g-~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+..-. ..+..+....+.++..|....+. .++.... -++.|+..+-+....++.+|..++..+.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 55421 35667778888888888875432 2233333 5566666666677777777777775554
No 401
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.13 E-value=1.3e+02 Score=33.79 Aligned_cols=109 Identities=16% Similarity=0.087 Sum_probs=70.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh------cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR------SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK 338 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~------~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k 338 (537)
...++.+|.+.+-.++...+.++.|+..+-....+|++ ...+..|+..|...++=+|..|..++..+...+. |
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s-k 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS-K 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc-c
Confidence 45677788888888888888888888764333334554 2445666666777788888888887766653321 0
Q ss_pred hHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 339 MAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 339 ~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
..-.++.++...++-|.+.+.-++++|...+..|-.
T Consensus 380 ~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 000123345556677777777888888888777543
No 402
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=34.00 E-value=23 Score=31.13 Aligned_cols=43 Identities=21% Similarity=0.095 Sum_probs=31.0
Q ss_pred ccccccccccccC--Cee-cCCC------ccccHHHHHHHHHcCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFD--PVV-VSTG------QTFDRVSVQVCRELGFLPDLENGF 71 (537)
Q Consensus 28 ~~~CpI~~~~m~d--PV~-~~~G------~ty~r~~i~~~~~~~~~~cp~~~~ 71 (537)
..-|.||.+-..+ =|+ +++| |-||..|+++|-+. ....|--|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccc
Confidence 6789999998888 443 5666 56999999999643 345665443
No 403
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.24 E-value=4.2e+02 Score=26.42 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=44.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH--HHHhcCCHHHHHH----HHc--------cCCHHHHHHHHHHHH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV--LIVRSGFVPLLID----VLK--------SGSEESQEHAAGALF 329 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~--~i~~~g~v~~Lv~----lL~--------~~~~e~~~~Aa~~L~ 329 (537)
++|.++.++.+.++.++..++.+|..+...-.... .+.+.|..+.+-+ .|. ..+..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 48999999999999999999999998876432222 2344554443333 332 233455666666666
Q ss_pred Hcc
Q 009320 330 SLA 332 (537)
Q Consensus 330 ~Ls 332 (537)
.|.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 663
No 404
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=33.22 E-value=32 Score=40.75 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=28.2
Q ss_pred CCCCcccccccc--ccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSG--SLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 24 ~~p~~~~CpI~~--~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
++|.++.||-|+ +++.|+ .+-+| || -....||+|+.++..
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsG--fD---------LpdK~CPkCg~pl~k 951 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSG--FD---------LPDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCC--CC---------CCCCCCCcCCCcccc
Confidence 569999999997 567777 33444 22 235589999998753
No 405
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=32.66 E-value=4.6e+02 Score=25.28 Aligned_cols=133 Identities=19% Similarity=0.141 Sum_probs=76.8
Q ss_pred HHHHH-HHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh
Q 009320 266 SALRN-LVVSRYSIVQTNAVASLVNLSLEK-KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343 (537)
Q Consensus 266 ~~Lv~-lL~s~~~~v~~~a~~~L~nLs~~~-~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~ 343 (537)
+.|+. +.+..+++.+...+.+|..++.++ .+...+ +..|..+...+..+.+..+.+.+..+-..++ +..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH---
Confidence 44443 445678899999999999999877 444333 4566666776666665555555555432221 111
Q ss_pred cCchHHHHHH--hc------cCC--HHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHh-cCCc--hHHHHHHHHHH
Q 009320 344 LGALQPLMHA--LR------AES--ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMV-KSGE--STSRVLLILCN 410 (537)
Q Consensus 344 ~g~l~~Lv~l--L~------~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL-~~~~--~~~~al~~L~n 410 (537)
+.+..++.. ++ +++ .+.....+.++..+|....+ .....++.+..+| ++.+ .+..++..|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 223333333 11 111 22334445677777765544 3345778888888 4433 44557888888
Q ss_pred Hh
Q 009320 411 LA 412 (537)
Q Consensus 411 La 412 (537)
||
T Consensus 149 Lc 150 (234)
T PF12530_consen 149 LC 150 (234)
T ss_pred HH
Confidence 88
No 406
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=31.98 E-value=4.1e+02 Score=33.21 Aligned_cols=133 Identities=16% Similarity=0.112 Sum_probs=74.7
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh-cCchHH
Q 009320 271 LVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV-LGALQP 349 (537)
Q Consensus 271 lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~-~g~l~~ 349 (537)
++.+.++.++..+......+-..-+ ...+..++..|+..+.+|+......|..+|..|+... ...+.. ...+..
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~--~~~l~~fa~~l~g 517 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN--PSELQPFATFLKG 517 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHTHHHHHG
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence 4457788888888776666654322 1223346788998888888766788999999998643 223332 345666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHH-HHhcCCchHHHHHHHHH
Q 009320 350 LMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLL-TMVKSGESTSRVLLILC 409 (537)
Q Consensus 350 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv-~lL~~~~~~~~al~~L~ 409 (537)
+++.+.+-+..-.+.....|..|+........-++.. +..++ +.|.......+-.++|.
T Consensus 518 iLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~de-l~ivIRKQLss~~~~~K~~GIIG 577 (1426)
T PF14631_consen 518 ILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDE-LHIVIRKQLSSSNPKYKRIGIIG 577 (1426)
T ss_dssp GGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHH-HHHHHHHHHT-SSHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHH-HHHHHHHhhcCCcHHHHHHhHHH
Confidence 6777776666666677888888876442222222222 22222 24555555555444433
No 407
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=31.93 E-value=28 Score=24.64 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=21.4
Q ss_pred cccccccccC--CeecCCCc-----cccHHHHHHHHHc-CCCCCCCC
Q 009320 31 CPVSGSLMFD--PVVVSTGQ-----TFDRVSVQVCREL-GFLPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~d--PV~~~~G~-----ty~r~~i~~~~~~-~~~~cp~~ 69 (537)
|-||++--.+ |.+.||+- -.=+.|+++|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 3455554332 67888853 3457899999975 44567765
No 408
>PLN03205 ATR interacting protein; Provisional
Probab=30.91 E-value=5.1e+02 Score=27.38 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=59.4
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhc---ChhhHHHHHhcCcHHHHHHHhc-------CCchHHHHHHHHHHHhcCh
Q 009320 346 ALQPLMHALRAESERTRHDSALALYHLTL---IQSNRVKLVKLNAVATLLTMVK-------SGESTSRVLLILCNLAASN 415 (537)
Q Consensus 346 ~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~---~~~n~~~iv~~g~v~~Lv~lL~-------~~~~~~~al~~L~nLa~~~ 415 (537)
.+++|+++..-++..+...++..|..+-. ..+.|...-..--...|.+++. ++.+.-.|+.++--+....
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 45667777666665555555555444332 1222222222222333444442 1122333555544444333
Q ss_pred ---hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 416 ---EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 416 ---~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
..|+.+....+.+.+.++|+. + ..-.++..|+..|+-|..
T Consensus 404 na~~eREkFG~~~VfESiaQLLkk-E-aGl~VqKealhLLfLLLN 446 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRK-E-GGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHH-h-ccchhhHHHHHHHHHHHc
Confidence 357777777778899999987 2 345778888887776643
No 409
>PHA00733 hypothetical protein
Probab=30.83 E-value=91 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.581 Sum_probs=12.5
Q ss_pred ccccccccccccCCeec
Q 009320 28 EFLCPVSGSLMFDPVVV 44 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~ 44 (537)
...|.||..++.+|..+
T Consensus 40 ~~~~~~~~~~~~~~~~l 56 (128)
T PHA00733 40 RLIRAVVKTLIYNPQLL 56 (128)
T ss_pred hHHHHHHhhhccChhhh
Confidence 57788888777777654
No 410
>PRK13908 putative recombination protein RecO; Provisional
Probab=30.63 E-value=40 Score=31.60 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=35.2
Q ss_pred CCCCCCccccccccccccCCeec---------CC--CccccHHHHHHHHHcCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVV---------ST--GQTFDRVSVQVCRELGF 63 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~---------~~--G~ty~r~~i~~~~~~~~ 63 (537)
+.-+..++.|-+|.+-..+.+.+ .| |.+|++.-|..|++..+
T Consensus 132 EGRLh~~~~Cf~Ce~~i~~~iaL~RaflpaH~~C~~~~~f~~~ki~~~f~~k~ 184 (204)
T PRK13908 132 EGRLHKDFICFLCDEKIENEIALARAFLPAHPSCIKSKSFELEKIKEFFRTKS 184 (204)
T ss_pred ccccCCCCeEEecCCccccchHHHHhhcccChhhhcccccCHHHHHHHHHhCC
Confidence 56688999999999999999886 34 78899999999988753
No 411
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.95 E-value=48 Score=25.67 Aligned_cols=39 Identities=10% Similarity=-0.093 Sum_probs=27.7
Q ss_pred ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHH
Q 009320 43 VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAM 84 (537)
Q Consensus 43 ~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l 84 (537)
|-.--+|||..|-+.-+. ..||.|+-.+--....|--.|
T Consensus 24 ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 24 ICTFECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 334468999999876543 379999988877667775433
No 412
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=29.80 E-value=27 Score=36.05 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=33.9
Q ss_pred ccccccccccccC--C--eecCCCccccHHHHHHHHHc-CCCCCCCCC
Q 009320 28 EFLCPVSGSLMFD--P--VVVSTGQTFDRVSVQVCREL-GFLPDLENG 70 (537)
Q Consensus 28 ~~~CpI~~~~m~d--P--V~~~~G~ty~r~~i~~~~~~-~~~~cp~~~ 70 (537)
++.|-.|++.+-- - --+||.|.|--.|+...+.+ +..+||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 5779999987632 1 24799999999999998765 455899998
No 413
>PRK14707 hypothetical protein; Provisional
Probab=29.72 E-value=1.4e+03 Score=29.97 Aligned_cols=115 Identities=21% Similarity=0.135 Sum_probs=54.5
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHh
Q 009320 225 ELSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLV-NLSLEKKNKVLIVR 302 (537)
Q Consensus 225 ~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~-nLs~~~~~k~~i~~ 302 (537)
..++-|+. .+......|+..|..---.+.+.+..+-..|+-..|=.+-+=++..+...++..|. .++.+.+.+..|--
T Consensus 377 ~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p 456 (2710)
T PRK14707 377 SVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDP 456 (2710)
T ss_pred HHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcCh
Confidence 34444422 33344445555555444456666666665655444444433345555555555554 55555554444433
Q ss_pred cCCHHHHHHHHc-cCCHHHHHHHHHHH-HHcccCcchhhH
Q 009320 303 SGFVPLLIDVLK-SGSEESQEHAAGAL-FSLALEDENKMA 340 (537)
Q Consensus 303 ~g~v~~Lv~lL~-~~~~e~~~~Aa~~L-~~Ls~~~~~k~~ 340 (537)
.+ |...+..|+ -++..+-..|+..| ..|+...+.+..
T Consensus 457 ~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a 495 (2710)
T PRK14707 457 IN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKA 495 (2710)
T ss_pred HH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhh
Confidence 33 333444443 34433333333444 346555444333
No 414
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.54 E-value=4.7e+02 Score=24.38 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=61.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc--------------------CCHHHHHHHHccC-CHHHHHH
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS--------------------GFVPLLIDVLKSG-SEESQEH 323 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~--------------------g~v~~Lv~lL~~~-~~e~~~~ 323 (537)
..++--++.++++.++..|+.+|..|-.....--..++. ..-..|+..|..+ +..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 344445667888999999999998776543222222221 1223344444443 4556667
Q ss_pred HHHHHHHcccCcc-hhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 324 AAGALFSLALEDE-NKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 324 Aa~~L~~Ls~~~~-~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
...+|..|..+-. .|-..+ -...+..+..++.+.+..++..++.++..|..
T Consensus 122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 7777777765543 232211 12233444445555677777777777666544
No 415
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=29.24 E-value=63 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHH
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQT 281 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~ 281 (537)
...+++.+..|+. .++.-..+.+.|+++.|+.+|.+.+.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3456677778884 567777888999999999999988876544
No 416
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.12 E-value=7.1e+02 Score=28.34 Aligned_cols=131 Identities=22% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+.+|+..|.|.+..+.+.+-..+..+.....+. -++..|+...- .++ ..++.+|..+ ..+..|..+.
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~-~~P~~K~~~~ 73 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNS----QRALEILVGV-QEPHDKHLFD 73 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCc----HHHHHHHHhc-CCccHHHHHH
Confidence 567999999998888887777777665332111 12556666533 333 3344455543 2333344332
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhh
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLT 373 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs 373 (537)
.|=..+. .+..|..+..+|..+...+. ---.|.+...+..|+++|..+ +..+...|+.+|.-|-
T Consensus 74 ------~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 74 ------KLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ------HHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 3334444 34677888888888876544 445566788999999998765 5566677777776653
No 417
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=29.10 E-value=53 Score=33.39 Aligned_cols=48 Identities=8% Similarity=-0.042 Sum_probs=36.8
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHc-CCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL-GFLPDLENGFKP 73 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~ 73 (537)
.+.-.|.||-+=.+=--++||||..|-.|--+.-.- ....||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 457899999998888889999999999998653211 234688898654
No 418
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.00 E-value=28 Score=28.15 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=11.5
Q ss_pred cccHHHHHHHHHc
Q 009320 49 TFDRVSVQVCREL 61 (537)
Q Consensus 49 ty~r~~i~~~~~~ 61 (537)
-|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 419
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.78 E-value=51 Score=38.53 Aligned_cols=70 Identities=14% Similarity=-0.002 Sum_probs=40.5
Q ss_pred CCCCC-ccccccccccccCCeec-CCCc-----cccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009320 23 KQPPK-EFLCPVSGSLMFDPVVV-STGQ-----TFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTS 95 (537)
Q Consensus 23 ~~~p~-~~~CpI~~~~m~dPV~~-~~G~-----ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 95 (537)
++++. ...||=|+....-. .. .||. .||..| .+ ..+..+||.|+...... -.-...++.....-.+.-
T Consensus 620 ~eVEVg~RfCpsCG~~t~~f-rCP~CG~~Te~i~fCP~C--G~-~~~~y~CPKCG~El~~~-s~~~i~l~~~~~~A~~~l 694 (1121)
T PRK04023 620 IEVEIGRRKCPSCGKETFYR-RCPFCGTHTEPVYRCPRC--GI-EVEEDECEKCGREPTPY-SKRKIDLKELYDRALENL 694 (1121)
T ss_pred eeecccCccCCCCCCcCCcc-cCCCCCCCCCcceeCccc--cC-cCCCCcCCCCCCCCCcc-ceEEecHHHHHHHHHHHh
Confidence 34444 57788888875222 22 3773 488888 11 12235799999887653 223344566655555554
Q ss_pred CC
Q 009320 96 GV 97 (537)
Q Consensus 96 ~~ 97 (537)
|.
T Consensus 695 g~ 696 (1121)
T PRK04023 695 GE 696 (1121)
T ss_pred CC
Confidence 44
No 420
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.61 E-value=1e+03 Score=28.12 Aligned_cols=219 Identities=15% Similarity=0.112 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHHhhc---cChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHH
Q 009320 233 ADIALQEEGVIALRRLTR---TNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPL 308 (537)
Q Consensus 233 ~~~~~~~~A~~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~ 308 (537)
.+.....-|++.+..++. .....+ -..+.=+++.++..++++.--++..||+++..++. +=++...+. .++..
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~ 506 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALEL 506 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHH
Confidence 344555667777776651 111111 11223345556666677777899999999999984 222332222 23455
Q ss_pred HHHHHc-cCCHHHHHHHHHHHHHcccCcc-hhhHHhh--cCchHHHHHHhccCCHHHHHHHHHH-HHHhhcChhhHHHHH
Q 009320 309 LIDVLK-SGSEESQEHAAGALFSLALEDE-NKMAIGV--LGALQPLMHALRAESERTRHDSALA-LYHLTLIQSNRVKLV 383 (537)
Q Consensus 309 Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~a-L~nLs~~~~n~~~iv 383 (537)
....|. +.+..++..|+-+|..+..+.. ....+.. .+.+..|+.+.+.-..+..-..+.. +...+ ++-..-.+
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fs--eElsPfA~ 584 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFS--EELSPFAV 584 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--HhhchhHH
Confidence 566666 6677899999999999876654 3343442 4566777777765432222222221 11121 11111112
Q ss_pred h--cCcHHHHHHHhcC-----CchHHH---HHHHHHHHhc---ChhhHHHHH-h--CCcHHHHHHHHhccCCCCHHHHHH
Q 009320 384 K--LNAVATLLTMVKS-----GESTSR---VLLILCNLAA---SNEGRSAIL-D--ANGVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 384 ~--~g~v~~Lv~lL~~-----~~~~~~---al~~L~nLa~---~~~~r~~i~-~--~g~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
+ .......++++.. ....++ |.++|..+.. .-+.+..+. + ....+.+-.+|.. .-.+.-+.
T Consensus 585 eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE 661 (1010)
T KOG1991|consen 585 ELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKN---DITDFYEE 661 (1010)
T ss_pred HHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---hhHHHHHH
Confidence 2 1244445555542 112233 4444444432 223444333 2 2334555556665 45566677
Q ss_pred HHHHHHHhhcCC
Q 009320 448 CVAALFALGHGN 459 (537)
Q Consensus 448 A~~~L~~L~~~~ 459 (537)
++.+...+....
T Consensus 662 ~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 662 LLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHhhhhhhh
Confidence 777777766543
No 421
>PHA03096 p28-like protein; Provisional
Probab=28.52 E-value=36 Score=34.17 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=29.4
Q ss_pred cccccccccccC-Ce-------ecCCCccccHHHHHHHHHcC--CCCCCCCCC
Q 009320 29 FLCPVSGSLMFD-PV-------VVSTGQTFDRVSVQVCRELG--FLPDLENGF 71 (537)
Q Consensus 29 ~~CpI~~~~m~d-PV-------~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~ 71 (537)
-.|-||.+.-.+ |+ +-.|-|.||-.||..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 568888875432 22 23789999999999998653 235666654
No 422
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=28.34 E-value=14 Score=30.74 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=15.9
Q ss_pred cccccccccc--cCCeec--CCCccccHHHHHHH--HHcCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLM--FDPVVV--STGQTFDRVSVQVC--RELGFLPDLENGFKP 73 (537)
Q Consensus 29 ~~CpI~~~~m--~dPV~~--~~G~ty~r~~i~~~--~~~~~~~cp~~~~~~ 73 (537)
=.||||.+.+ .|+... +.||+|.|=++.-- ..-+.+.|+.|+...
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEE
Confidence 4699999954 677654 55999999776431 122334688887654
No 423
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=28.23 E-value=1e+03 Score=29.20 Aligned_cols=224 Identities=19% Similarity=0.144 Sum_probs=109.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-----------cC--CHHHHHHHHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-----------SR--YSIVQTNAVASLV 288 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-----------s~--~~~v~~~a~~~L~ 288 (537)
.++.|+..+-+.+++.|.-++-.|+.+.+.....-.... +-..+..++. ++ -..+++.++.+|.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~---led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL---LEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH---HHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 467888888899999999999898888754321111100 1111111111 11 1246666666776
Q ss_pred HhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH-cccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHH
Q 009320 289 NLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS-LALEDENKMAIGVLGALQPLMHALRAESERTRHDSAL 367 (537)
Q Consensus 289 nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~ 367 (537)
.+..+....... -.+..+..++.....+++.--+..+.+ ++...+.- ...-.-+++..+.-|.+.+..++..|+.
T Consensus 155 ~~l~~~~~s~~~---~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l-~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 155 AYLKHMDESLIK---ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL-FQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHHhhhhHhhH---HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 665532111110 123455555554444433322222221 11000000 0001123444555566667778888888
Q ss_pred HHHHhhcCh--hhHHHHHhcCcHHHHHHHhcCC----chHHHHHHHHHHHhcChhhHHHHH----hCCcHHHHHHHHhcc
Q 009320 368 ALYHLTLIQ--SNRVKLVKLNAVATLLTMVKSG----ESTSRVLLILCNLAASNEGRSAIL----DANGVSILVGMLRES 437 (537)
Q Consensus 368 aL~nLs~~~--~n~~~iv~~g~v~~Lv~lL~~~----~~~~~al~~L~nLa~~~~~r~~i~----~~g~I~~Lv~lL~~~ 437 (537)
.|.-..+.. .+..+| +-++..+...+.+. .........|..+|...+.-+... ..|.++.+...++.
T Consensus 231 ~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~- 307 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH- 307 (1549)
T ss_pred HhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH-
Confidence 777655432 112222 23444444444321 122233444555555542222211 24667777777776
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q 009320 438 GSDSEATRENCVAALFALGH 457 (537)
Q Consensus 438 ~~~~~~~~e~A~~~L~~L~~ 457 (537)
.-..++..++..+..|..
T Consensus 308 --~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 308 --TISSVRRAALETLAMLLE 325 (1549)
T ss_pred --HHHHHHHHHHHHHHHHHh
Confidence 445677778888887776
No 424
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.19 E-value=3.8e+02 Score=22.94 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=43.1
Q ss_pred CchHHHHHHhccCC----HHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHH
Q 009320 345 GALQPLMHALRAES----ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLIL 408 (537)
Q Consensus 345 g~l~~Lv~lL~~~~----~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L 408 (537)
.++..+.+++.... ......++.++......- .-..+...+.++.+.++|..+...+.|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34555555555443 677888888888866532 3445556779999999998888877777665
No 425
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.00 E-value=48 Score=23.94 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCccccccccccccCC-eecCCCccccHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDP-VVVSTGQTFDRVSVQV 57 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~ 57 (537)
|+-|.|-.|...+.+. .....|.-||+.|..+
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 6789999999999888 6778899999998765
No 426
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.43 E-value=3e+02 Score=23.69 Aligned_cols=103 Identities=24% Similarity=0.231 Sum_probs=60.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh--------H-HHHHh----h--cCChHHHHHHHHccCC----HHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNE--------E-LRVSI----C--TPNLLSALRNLVVSRY----SIVQTN 282 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~--------~-~r~~i----~--~~g~i~~Lv~lL~s~~----~~v~~~ 282 (537)
-++.+++.+.+ ++......+..|+.+..+-. . .|..+ . ...++..+...+.... .++...
T Consensus 27 ~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 105 (148)
T PF08389_consen 27 FLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKA 105 (148)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHH
T ss_pred HHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 35667777765 45556566666665542211 1 12211 1 1334555555554322 778888
Q ss_pred HHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 009320 283 AVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGAL 328 (537)
Q Consensus 283 a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L 328 (537)
++.++..... --.-..+.+...++.++.+|..+ +.+..|+.+|
T Consensus 106 ~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 106 ALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 8888887665 33455666777899999999544 4577777654
No 427
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=27.34 E-value=3.1e+02 Score=28.04 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHhcC--cHHHHHHHhcCCc-----hHHHHHHHHHHHhcChhhHHHHH-------hCC
Q 009320 360 RTRHDSALALYHLTLIQSNRVKLVKLN--AVATLLTMVKSGE-----STSRVLLILCNLAASNEGRSAIL-------DAN 425 (537)
Q Consensus 360 ~~~~~A~~aL~nLs~~~~n~~~iv~~g--~v~~Lv~lL~~~~-----~~~~al~~L~nLa~~~~~r~~i~-------~~g 425 (537)
.++..|+..|..+........++...+ ++.-|++++.-++ ++..|+.+|..++...-....+. .+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 355667777777777778888888876 9999999997432 45558888888887553333332 255
Q ss_pred cHHHHHH
Q 009320 426 GVSILVG 432 (537)
Q Consensus 426 ~I~~Lv~ 432 (537)
.+..+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555554
No 428
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.24 E-value=29 Score=36.94 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=55.8
Q ss_pred cccCCCCCCCCCCccccccccccccCCeecCCC-ccccHHHHHHH-HHcCCCCCC--CCCCCCCCCCCcccHHHHHHHHH
Q 009320 15 FHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTG-QTFDRVSVQVC-RELGFLPDL--ENGFKPDFSTVIPNLAMKQTILN 90 (537)
Q Consensus 15 ~~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~-~~~~~~~cp--~~~~~~~~~~l~pn~~l~~~i~~ 90 (537)
.+..+......|+...||++..+...||+-++| -+++..++..- +..+..+|+ .++......-+.||.++....-+
T Consensus 293 ~~~~~~~~~~~~~~~~~p~~k~v~~~~~~~s~~~~~~~~~~~~~~s~d~~~p~~~~~~~~~~~~~~g~~~~~~~~sa~~~ 372 (448)
T KOG0314|consen 293 ENSGSSQRTQDPESLRCPPPKALSPTTSVASPGEKKPLPSNNNPTSTDPQFPEGAEITSGYDVSPPGFVPKPVDASAPWQ 372 (448)
T ss_pred cCcccccccCCCccccCCcccccCCcccccCCCCcccCCcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Confidence 344445678899999999999999999998775 67888887653 333333342 45555556678888888877776
Q ss_pred HHH
Q 009320 91 WCD 93 (537)
Q Consensus 91 ~~~ 93 (537)
|-.
T Consensus 373 ~~~ 375 (448)
T KOG0314|consen 373 GSS 375 (448)
T ss_pred ccc
Confidence 643
No 429
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=27.00 E-value=50 Score=27.53 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=26.7
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
....+|..|.||-|++ ..=||.+ ++ ..++..||.|+.-...
T Consensus 14 ~k~klpt~f~CP~Cge-~~v~v~~--~k-----------~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 14 PKPKLPKIFECPRCGK-VSISVKI--KK-----------NIAIITCGNCGLYTEF 54 (99)
T ss_pred cccCCCcEeECCCCCC-eEeeeec--CC-----------CcceEECCCCCCccCE
Confidence 3567799999999995 3333333 22 1356679999876543
No 430
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=26.97 E-value=1e+02 Score=27.80 Aligned_cols=23 Identities=61% Similarity=0.648 Sum_probs=10.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 009320 306 VPLLIDVLKSGSEESQEHAAGAL 328 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L 328 (537)
|.+|+.+|.+.+.++...|+.+|
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aL 118 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEAL 118 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 45555555444444555555555
No 431
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=26.94 E-value=7.4e+02 Score=25.86 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhcCCCcc----------
Q 009320 233 ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV------SRYSIVQTNAVASLVNLSLEKKN---------- 296 (537)
Q Consensus 233 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------s~~~~v~~~a~~~L~nLs~~~~~---------- 296 (537)
+....+..|...|+.|++.....-..+. ...+-.+|. +.+..-+..|+..+..|+.....
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~ 298 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNE 298 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-T
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccc
Confidence 3445567788899999864222211111 122223332 34667788888888888763321
Q ss_pred ---HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHH
Q 009320 297 ---KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALAL 369 (537)
Q Consensus 297 ---k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 369 (537)
-..+....++|-|. -=.+..+-++..|+..+...-..- .+..+ .++++.|+..|.+++..+.-.|+.++
T Consensus 299 ~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 299 LVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22222333333332 101233557777777776654321 22222 35899999999998887777777654
No 432
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.85 E-value=1.9e+02 Score=26.95 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
.+.+++...+.+...+..|+..|....+.+--+- .-.+|.|+.+..++++.++..|...+..+..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 3567777678899999999999887765431111 1248999999999999999999999988864
No 433
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=26.79 E-value=29 Score=21.26 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=4.6
Q ss_pred ccccccccc
Q 009320 30 LCPVSGSLM 38 (537)
Q Consensus 30 ~CpI~~~~m 38 (537)
.||||.+.|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 455555544
No 434
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.67 E-value=3.8e+02 Score=22.39 Aligned_cols=68 Identities=7% Similarity=0.109 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVV------SRYSIVQTNAVASLVNL 290 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~------s~~~~v~~~a~~~L~nL 290 (537)
+..|.+.|.+.++.++..|+..|..+.++.. .....+.....+.-++++.. ..+..++..+..++...
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3567888888899999999999999998763 45555666655555544311 23567777777665543
No 435
>PHA02862 5L protein; Provisional
Probab=26.41 E-value=58 Score=28.98 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=31.8
Q ss_pred ccccccccccCCeecCCCc-----cccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPVVVSTGQ-----TFDRVSVQVCREL-GFLPDLENGFKPDF 75 (537)
Q Consensus 30 ~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~-~~~~cp~~~~~~~~ 75 (537)
.|=||.+-=.|. .-||.. -.-++|+++|+.. +...||.|+.++.-
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 577888875544 456643 3458999999975 34579999988754
No 436
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=25.68 E-value=6.6e+02 Score=24.82 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.++|+.+++... ...+.|.. ..+.+..+||.|... .+++.+-..++..|.+|+.
T Consensus 15 LkdL~r~lr~dd~~~~-~v~r~lg~---------~~iv~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 15 LKDLKRFLRRDDEDQR-DVRRQLGE---------WNIVQKDLIPILISY--KDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHhCcchH-HHHHHHHH---------hchhhhhHHHHHHhc--cCchHHHHHHHHHHHHhCC
Confidence 5678888866555433 11111111 123445556655543 3478888999999999987
No 437
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=25.56 E-value=3.9e+02 Score=30.22 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=52.3
Q ss_pred hcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 260 CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 260 ~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
...+++|.|++++.+.+..++-.-+.-+-+.. +..-..+++.-++|.+..-+.+.++.+|+.++..+..|+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 35678999999999888776654444333222 334456677778899998899999999999988887765
No 438
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.22 E-value=4e+02 Score=22.63 Aligned_cols=40 Identities=18% Similarity=0.032 Sum_probs=33.0
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhc
Q 009320 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKL 385 (537)
Q Consensus 346 ~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~ 385 (537)
+++.|+.-|.+.++.+...|+.+|...|..+.+...++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 6788999999999999999999999998877666666553
No 439
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=25.17 E-value=6.7e+02 Score=24.75 Aligned_cols=216 Identities=16% Similarity=0.105 Sum_probs=109.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHcccCcchhhHHhh
Q 009320 267 ALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKS--GSEESQEHAAGALFSLALEDENKMAIGV 343 (537)
Q Consensus 267 ~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~ 343 (537)
.|-..|.++++.++..|+..|..+.. -+... ....-+..|+..+.+ .+......++..|..|.......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~----- 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS----- 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----
Confidence 34456778899999999988876543 23221 111224455554432 34455555566666665332211
Q ss_pred cCchHHHHHHh-ccC-----CHHHHHHHHHHHHHhhcChhhHHHHH--hcCcHHHHHHHhcCCchHHH---HHHHHHHHh
Q 009320 344 LGALQPLMHAL-RAE-----SERTRHDSALALYHLTLIQSNRVKLV--KLNAVATLLTMVKSGESTSR---VLLILCNLA 412 (537)
Q Consensus 344 ~g~l~~Lv~lL-~~~-----~~~~~~~A~~aL~nLs~~~~n~~~iv--~~g~v~~Lv~lL~~~~~~~~---al~~L~nLa 412 (537)
.+....+++-+ .+. ....|......|..|.... ...+. ..+.+..+++.+........ +..++..+.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 11122222322 222 2345666777777765442 22223 24577777777764332222 333333333
Q ss_pred cChhhHHHHHhCCcHHHHHHHHhc-------cCCCCH--HHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCC
Q 009320 413 ASNEGRSAILDANGVSILVGMLRE-------SGSDSE--ATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGS 483 (537)
Q Consensus 413 ~~~~~r~~i~~~g~I~~Lv~lL~~-------~~~~~~--~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s 483 (537)
..-+ . ...++.+-+.+.. ...+++ -.++.-...|.+.-..++.+. .-+++.|++-+.+++
T Consensus 153 ~~~~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 153 QEFD-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTS 221 (262)
T ss_pred Hhcc-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCC
Confidence 2111 1 2333444444421 011121 122333333333322333333 345889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 009320 484 QRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 484 ~~~k~~A~~lL~~L~~~~~e 503 (537)
+.+|..+..+|..+....+.
T Consensus 222 ~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred cHHHHHHHHHHHHHHHHCCH
Confidence 99999999999887765543
No 440
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=25.13 E-value=59 Score=36.64 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=26.0
Q ss_pred cccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC-CCccc
Q 009320 29 FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS-TVIPN 81 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~-~l~pn 81 (537)
..||-|+.- ++.|..||..|= .-+ ...+||.|+...+.. .+.|+
T Consensus 2 ~~Cp~Cg~~------n~~~akFC~~CG-~~l--~~~~Cp~CG~~~~~~~~fC~~ 46 (645)
T PRK14559 2 LICPQCQFE------NPNNNRFCQKCG-TSL--THKPCPQCGTEVPVDEAHCPN 46 (645)
T ss_pred CcCCCCCCc------CCCCCccccccC-CCC--CCCcCCCCCCCCCcccccccc
Confidence 368888764 567888888881 100 123588888775532 34443
No 441
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.05 E-value=3.4e+02 Score=27.66 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCc
Q 009320 268 LRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGA 346 (537)
Q Consensus 268 Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~ 346 (537)
.+..|.+.+.+....++..|..|+. +.+....+.. -.+-.+++-+++....+-..|+.++..+...-.++..- .
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~----~ 167 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ----E 167 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 3445567777888888888888876 4443333333 23456777777666667677777776664332222111 2
Q ss_pred hHHHHHHhc-cC---CHHHHHHHHHHHHHhhc
Q 009320 347 LQPLMHALR-AE---SERTRHDSALALYHLTL 374 (537)
Q Consensus 347 l~~Lv~lL~-~~---~~~~~~~A~~aL~nLs~ 374 (537)
+..++..|. .. +.-++.+|-.+|..+..
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 333333332 22 34467777777766543
No 442
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.95 E-value=8.1e+02 Score=27.00 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=72.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCCc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--------RYSIVQTNAVASLVNLSLEKK 295 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--------~~~~v~~~a~~~L~nLs~~~~ 295 (537)
+++++.+-++++..+.+|+..|+.=+.- . -++|-++.++.. .+-+.....+..+..|..++.
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~TDsGL----~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLETDSGL----Q------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhccCccH----H------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 6777777777777887777776643321 1 124555555532 244556666666777776554
Q ss_pred cHHHHHhcCCHHHHHHHHcc----------CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC
Q 009320 296 NKVLIVRSGFVPLLIDVLKS----------GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~----------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~ 357 (537)
....-.=.-.+|.++..+-+ ....+|..|+.++..++.+......-.+..++..|.+.+.+.
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 32221112345666554432 235689999999988876654433334455666677776654
No 443
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.77 E-value=4.6 Score=31.24 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=21.1
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
+..||.|...| .-..|+-+|-.|-..+... ..||.|++++.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~~--a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKKE--AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEEE--EE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECccccccceec--ccCCCcccHHH
Confidence 46899998764 3334788898885432222 25999988764
No 444
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.25 E-value=2.4e+02 Score=29.60 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=61.1
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhcCCC
Q 009320 425 NGVSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 425 g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
.++..|.+-|.. .++.+.-.|+..|..+.. +...++..+-.......|..++. ...++++++-..++...++..-
T Consensus 45 d~lk~i~KRln~---~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 45 DCLKAIMKRLNH---KDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHHHHhcC---CCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 346677777766 788899999999998877 45678888888888888999988 6678899998888888776544
Q ss_pred CCcc
Q 009320 503 DDED 506 (537)
Q Consensus 503 e~~~ 506 (537)
.+.+
T Consensus 122 ~Dp~ 125 (462)
T KOG2199|consen 122 KDPS 125 (462)
T ss_pred cCcc
Confidence 4433
No 445
>COG1773 Rubredoxin [Energy production and conversion]
Probab=24.25 E-value=37 Score=25.00 Aligned_cols=14 Identities=29% Similarity=0.926 Sum_probs=12.4
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
-++|+++.||.|+-
T Consensus 31 edlPd~w~CP~Cg~ 44 (55)
T COG1773 31 EDLPDDWVCPECGV 44 (55)
T ss_pred hhCCCccCCCCCCC
Confidence 58999999999984
No 446
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=24.06 E-value=53 Score=26.74 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.8
Q ss_pred eecCCCccccHHHHHHHHHc
Q 009320 42 VVVSTGQTFDRVSVQVCREL 61 (537)
Q Consensus 42 V~~~~G~ty~r~~i~~~~~~ 61 (537)
|++|.|+.|++..|.+-++.
T Consensus 10 VtIp~G~KYdK~wLl~~iq~ 29 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS 29 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH
T ss_pred EEecCCcccCHHHHHHHHHH
Confidence 79999999999999887765
No 447
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=23.66 E-value=88 Score=28.14 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=21.1
Q ss_pred CCCccccHHHHHHHHHc----------CCCCCCCCCCCC-CCCCCcccH
Q 009320 45 STGQTFDRVSVQVCREL----------GFLPDLENGFKP-DFSTVIPNL 82 (537)
Q Consensus 45 ~~G~ty~r~~i~~~~~~----------~~~~cp~~~~~~-~~~~l~pn~ 82 (537)
.+||.|| .||.. |.-.||+|+..- ...-..|++
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v 52 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAV 52 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCee
Confidence 5799997 46632 445899998653 333455664
No 448
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.62 E-value=4.8e+02 Score=23.07 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHH-HHHHHcc---CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSA-LRNLVVS---RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~s---~~~~v~~~a~~~L~nLs~ 292 (537)
+..|-++|. +.++.++..|+..|..+.++. ......++....+.- |++++.. .+..|+...+..|...+.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 456777886 468999999999999998775 355667778888886 8998863 345788888888876664
No 449
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=23.33 E-value=36 Score=30.75 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=18.6
Q ss_pred CccccccccccccCCeecCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTG 47 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G 47 (537)
++..||||++.=.+-|.|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 578999999999999998774
No 450
>PRK14707 hypothetical protein; Provisional
Probab=23.06 E-value=1.8e+03 Score=29.04 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHH-HHhcCCCccHHHHHhcCCHHHHHHHHcc-C-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHH
Q 009320 275 RYSIVQTNAVASL-VNLSLEKKNKVLIVRSGFVPLLIDVLKS-G-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLM 351 (537)
Q Consensus 275 ~~~~v~~~a~~~L-~nLs~~~~~k~~i~~~g~v~~Lv~lL~~-~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv 351 (537)
.+..+...|+..| ..|..+.+.+..+ +.-.+...+.-|+. + +..++..|..+-..|..+++.+..+...| +..++
T Consensus 302 pd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~l 379 (2710)
T PRK14707 302 ADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVL 379 (2710)
T ss_pred CCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHH
Confidence 4444444444444 4666554444333 22334455555543 2 45666666666667877777666655443 33344
Q ss_pred HHhcc-CCHHHHHHHHHHHHH-hhcChhhHHHHHhcCcHHHHHHHhc
Q 009320 352 HALRA-ESERTRHDSALALYH-LTLIQSNRVKLVKLNAVATLLTMVK 396 (537)
Q Consensus 352 ~lL~~-~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~~g~v~~Lv~lL~ 396 (537)
.-|.. ++..+...|+.+|.. |....+.+.. .+...|..++.-|.
T Consensus 380 NalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~-~~~Q~van~lnals 425 (2710)
T PRK14707 380 NALSKWPDTPVCAAAASALAEHVVDDLELRKG-LDPQGVSNALNALA 425 (2710)
T ss_pred hhhhcCCCchHHHHHHHHHHHHhccChhhhhh-cchhhHHHHHHHhh
Confidence 44443 345566666666654 4444444433 34444555555554
No 451
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.70 E-value=1.1e+03 Score=26.56 Aligned_cols=229 Identities=19% Similarity=0.142 Sum_probs=109.9
Q ss_pred cCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHH---ccCCHHHHHHHHHHHHHcccCcc
Q 009320 261 TPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVL---KSGSEESQEHAAGALFSLALEDE 336 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL---~~~~~e~~~~Aa~~L~~Ls~~~~ 336 (537)
..-++|.|++.|.. ...+....+...|.-.+....|...+.+ .++..| .+++.++.+....-+..-+....
T Consensus 357 n~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~e-----~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s~ 431 (896)
T KOG4337|consen 357 NDEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLHE-----QLLYWLGSADHPSEETIATLLNKRCEASISSL 431 (896)
T ss_pred hhhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHHH-----HHHHHhhccCCCcHHHHHHHHHHHhhhhhhhh
Confidence 46688999999865 3444555666677777665544433322 233222 33444443322222222111111
Q ss_pred hhhHHhhcCchHHHHHHhccCC--HHHHHHHHH-HHHHhhcChh---hH---HHH---HhcCcHHHHHHHhcCCchHHHH
Q 009320 337 NKMAIGVLGALQPLMHALRAES--ERTRHDSAL-ALYHLTLIQS---NR---VKL---VKLNAVATLLTMVKSGESTSRV 404 (537)
Q Consensus 337 ~k~~I~~~g~l~~Lv~lL~~~~--~~~~~~A~~-aL~nLs~~~~---n~---~~i---v~~g~v~~Lv~lL~~~~~~~~a 404 (537)
++..-...-++..|+..+..+. .++.+.+-. .|..|..... .+ ..+ +.-.+++.|++.-..+...+..
T Consensus 432 ~~~re~v~~iv~tlir~~~~~gve~~~l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe~p~~s 511 (896)
T KOG4337|consen 432 NSCREGVETIVNTLIRDLTAGGVEVRVLEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGEKPEQS 511 (896)
T ss_pred HHHhhhHHHHHHHHHHHhhCCCcccHHHHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccCCcchh
Confidence 1111111123445555444432 122222222 2222333211 11 111 1224677777776666544444
Q ss_pred HHHHHHHhcChh--hHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH
Q 009320 405 LLILCNLAASNE--GRSAILD--ANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE 480 (537)
Q Consensus 405 l~~L~nLa~~~~--~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~ 480 (537)
..++..|...+- -.+.... +..-..+.++.++ .++..|+.++.++.-....+.. ++.-+.
T Consensus 512 ~~atsAl~~f~l~si~~~~kk~~~~i~hq~~k~f~~------t~rTlA~dIiL~~~P~~~~v~n----------~ll~l~ 575 (896)
T KOG4337|consen 512 MRATSALAEFFLRSICQTKKKIGAPITHQLIKLFRN------TTRTLAIDIILKCVPDHQNVAN----------LLLTLN 575 (896)
T ss_pred HHHHHHHHhcCchhhhHHHHHhcchHHHHHHHHHhc------chhHHHHHHHHhcCccHHHHHH----------HHHHhC
Confidence 444444444331 1111111 2334666777765 2566888887775332222222 233455
Q ss_pred hCCHHHHHHHHHHHHHhhcCCCCCcchhhh
Q 009320 481 RGSQRAKEKAKRILEMLKGREDDDEDVDWE 510 (537)
Q Consensus 481 ~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~ 510 (537)
..+.+...+...++++|+...|+.-++=|+
T Consensus 576 ~~dqE~~~Y~l~~i~ml~~~~p~~ka~f~s 605 (896)
T KOG4337|consen 576 PDDQEKWHYLLKAIEMLSGNKPELKAEFWS 605 (896)
T ss_pred CChHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 556678888888999998888886665563
No 452
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.19 E-value=84 Score=33.94 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 440 DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 440 ~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
..+++++.|..++.+++.+.+..+..+-....-..+++++-..-+++-+.+..+|+.+-+
T Consensus 340 ~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 340 KNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred cChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 578899999999999988765444343344445566677777777887777777776663
No 453
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=21.97 E-value=33 Score=33.72 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.9
Q ss_pred ccccccccccccCCe
Q 009320 28 EFLCPVSGSLMFDPV 42 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV 42 (537)
-|.|+||+-+|..++
T Consensus 273 G~VCSVCLSVfC~~~ 287 (314)
T KOG2487|consen 273 GFVCSVCLSVFCRFV 287 (314)
T ss_pred eeehHHHHHHhhCCC
Confidence 488999999998884
No 454
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.97 E-value=5.2e+02 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=27.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
.+|.++++|.++...+...|+.++-.+-. .+.+...+.
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if 537 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIF 537 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCcccccc
Confidence 47889999999888899999988886655 343333333
No 455
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.56 E-value=5e+02 Score=30.42 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHH------HhCCcHHHHH
Q 009320 358 SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAI------LDANGVSILV 431 (537)
Q Consensus 358 ~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i------~~~g~I~~Lv 431 (537)
+....-.+++.|+.|+.+......+|+.|+|..|+.+=.-.....-.-.+|+.+....+.-..+ +-+.++..-+
T Consensus 366 d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~ 445 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAI 445 (1516)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHH
Confidence 3345567778888888888888899999999888765332211111223333343332222221 2244566667
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHH
Q 009320 432 GMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVE 479 (537)
Q Consensus 432 ~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll 479 (537)
.+|.. .....+.++... ...|.--..+.........+..|+.++
T Consensus 446 ~l~~c---s~~~~~~~~~~f-f~~~f~frail~~fd~~d~l~~l~~~~ 489 (1516)
T KOG1832|consen 446 ELLDC---SQDQARKNSALF-FAAAFVFRAILDAFDAQDSLQKLLAIL 489 (1516)
T ss_pred HHHhc---chhhccchHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 77876 334444443322 333332112233333344455555543
No 456
>PRK01343 zinc-binding protein; Provisional
Probab=21.54 E-value=73 Score=23.66 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=9.4
Q ss_pred ccccccccccccC
Q 009320 28 EFLCPVSGSLMFD 40 (537)
Q Consensus 28 ~~~CpI~~~~m~d 40 (537)
...||||+..+..
T Consensus 9 ~~~CP~C~k~~~~ 21 (57)
T PRK01343 9 TRPCPECGKPSTR 21 (57)
T ss_pred CCcCCCCCCcCcC
Confidence 4679999887654
No 457
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=21.51 E-value=1.8e+02 Score=29.32 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=40.9
Q ss_pred cCchHHHHHHhccCCHHHHHHHHHHHHHhhcC---------------hhhHHHHHhcCcHHHHHHHhc
Q 009320 344 LGALQPLMHALRAESERTRHDSALALYHLTLI---------------QSNRVKLVKLNAVATLLTMVK 396 (537)
Q Consensus 344 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---------------~~n~~~iv~~g~v~~Lv~lL~ 396 (537)
...+..+++-|...+...+..|+.+|..++.. ..|...+.+.|++++|+++|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34566777777777777788888888887742 347788889999999999885
No 458
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=21.38 E-value=1.1e+02 Score=28.22 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=21.4
Q ss_pred CCCccccHHHHHHHHHcC-CCCCCCCCCCCC
Q 009320 45 STGQTFDRVSVQVCRELG-FLPDLENGFKPD 74 (537)
Q Consensus 45 ~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~ 74 (537)
.||+.|.+.-+......+ ...||.|+..+.
T Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lr 140 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEEEPPRCPKCGGLLR 140 (178)
T ss_dssp TTSBEEEGHHHHHHHHTTSSCBCTTTSCBEE
T ss_pred CCCccccchhhcccccccccccccccCccCC
Confidence 588889888776655544 346999988654
No 459
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.38 E-value=1.8e+02 Score=31.61 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=47.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 267 ALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 267 ~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~-~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
++-.+....+++++..|..++.+++.+.+|+.... ....-..++.++....+++-+.++.++..+-.
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33334456789999999999999999877776544 34444566777776666666666666666543
No 460
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=21.04 E-value=31 Score=20.28 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.6
Q ss_pred cccccccccccCCe
Q 009320 29 FLCPVSGSLMFDPV 42 (537)
Q Consensus 29 ~~CpI~~~~m~dPV 42 (537)
|.|.||...|.++.
T Consensus 1 ~~C~~C~~~f~s~~ 14 (25)
T PF12874_consen 1 FYCDICNKSFSSEN 14 (25)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCCcCCHH
Confidence 56888888887764
No 461
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.74 E-value=20 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=14.4
Q ss_pred CCCccccHHHHHHHHHcCCCCCCCCCC
Q 009320 45 STGQTFDRVSVQVCRELGFLPDLENGF 71 (537)
Q Consensus 45 ~~G~ty~r~~i~~~~~~~~~~cp~~~~ 71 (537)
.|||.|+...= -.+.....||.|+.
T Consensus 10 ~Cg~~fe~~~~--~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQS--ISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEE--cCCCCCCcCCCCCC
Confidence 56777775421 11123447999987
No 462
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=20.03 E-value=1.1e+03 Score=25.22 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc---c-------CCHHHHHHHHHHHHHhhcC
Q 009320 307 PLLIDVLKSGS-EESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR---A-------ESERTRHDSALALYHLTLI 375 (537)
Q Consensus 307 ~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~---~-------~~~~~~~~A~~aL~nLs~~ 375 (537)
..++.+|..+. ...+.....++.-|+.+.+.-..+.....+..|+.+.+ . .+..+...++++|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 35667776665 44555666777777766543333322222233333321 1 1236788999999998875
Q ss_pred -hhhHHHHHhcCcHHHHHHHhcC---C----chHHHHHHHHHHHhc-ChhhHHH-HHhCCcHHHHHHHHhc
Q 009320 376 -QSNRVKLVKLNAVATLLTMVKS---G----ESTSRVLLILCNLAA-SNEGRSA-ILDANGVSILVGMLRE 436 (537)
Q Consensus 376 -~~n~~~iv~~g~v~~Lv~lL~~---~----~~~~~al~~L~nLa~-~~~~r~~-i~~~g~I~~Lv~lL~~ 436 (537)
+..+....+...+..+++.+.. . +..--=+..|.-|.. ..+.|.. +.+.++++.+.+.+..
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 4566677777777777776631 1 111112344433333 3356655 4577889999998876
Done!