Query 009320
Match_columns 537
No_of_seqs 355 out of 2663
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 23:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 4.9E-30 1.7E-34 264.0 25.8 264 237-504 48-339 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 1.6E-29 5.6E-34 269.8 25.7 275 223-500 4-361 (457)
3 3l6x_A Catenin delta-1; cateni 100.0 7.9E-29 2.7E-33 268.5 27.1 292 221-521 48-400 (584)
4 3nmz_A APC variant protein; pr 100.0 1.1E-28 3.9E-33 261.4 26.1 260 240-503 167-454 (458)
5 3nmz_A APC variant protein; pr 100.0 2.1E-27 7.1E-32 251.7 22.0 294 223-520 72-425 (458)
6 3now_A UNC-45 protein, SD10334 100.0 2E-26 6.7E-31 257.6 29.3 292 222-520 422-754 (810)
7 1xm9_A Plakophilin 1; armadill 99.9 2.2E-26 7.5E-31 245.6 27.4 278 222-501 45-451 (457)
8 3l6x_A Catenin delta-1; cateni 99.9 2.8E-25 9.6E-30 240.7 30.3 278 221-500 90-477 (584)
9 3nmw_A APC variant protein; AR 99.9 4.9E-26 1.7E-30 234.2 22.4 236 222-460 74-337 (354)
10 3ul1_B Importin subunit alpha- 99.9 1.2E-25 4.1E-30 243.2 25.3 289 223-518 59-360 (510)
11 3ul1_B Importin subunit alpha- 99.9 4.1E-25 1.4E-29 239.0 29.0 276 222-500 101-388 (510)
12 3tpo_A Importin subunit alpha- 99.9 1.2E-24 4E-29 236.5 31.4 276 222-500 120-407 (529)
13 3now_A UNC-45 protein, SD10334 99.9 8.3E-26 2.8E-30 252.6 21.7 289 223-519 379-711 (810)
14 4hxt_A De novo protein OR329; 99.9 3.2E-24 1.1E-28 208.3 26.9 239 263-504 2-246 (252)
15 3tpo_A Importin subunit alpha- 99.9 2.1E-24 7.1E-29 234.5 27.9 291 221-518 76-379 (529)
16 4b8j_A Importin subunit alpha- 99.9 6.6E-24 2.3E-28 230.0 30.6 291 221-518 74-373 (528)
17 4hxt_A De novo protein OR329; 99.9 5.7E-24 2E-28 206.6 26.9 235 222-459 3-243 (252)
18 4b8j_A Importin subunit alpha- 99.9 1.7E-23 5.8E-28 226.8 33.0 276 222-500 118-401 (528)
19 4db8_A Armadillo-repeat protei 99.9 4.1E-24 1.4E-28 208.5 22.8 232 223-457 14-251 (252)
20 1jdh_A Beta-catenin; beta-cate 99.9 3.3E-23 1.1E-27 223.6 29.5 296 223-520 19-359 (529)
21 1wa5_B Importin alpha subunit; 99.9 6E-23 2E-27 222.8 30.6 292 220-518 86-385 (530)
22 4db8_A Armadillo-repeat protei 99.9 1.1E-23 3.9E-28 205.4 22.2 234 263-499 12-251 (252)
23 1wa5_B Importin alpha subunit; 99.9 1.9E-22 6.4E-27 218.8 33.1 276 222-500 131-413 (530)
24 2z6h_A Catenin beta-1, beta-ca 99.9 8.8E-23 3E-27 226.9 30.3 295 223-519 16-355 (644)
25 2jdq_A Importin alpha-1 subuni 99.9 4.7E-22 1.6E-26 209.9 33.3 274 223-500 66-348 (450)
26 1jdh_A Beta-catenin; beta-cate 99.9 5E-22 1.7E-26 214.3 27.9 289 223-518 61-399 (529)
27 3tt9_A Plakophilin-2; cell adh 99.9 9.5E-23 3.2E-27 196.6 18.2 192 222-414 9-230 (233)
28 2z6h_A Catenin beta-1, beta-ca 99.9 9.2E-22 3.1E-26 218.6 28.1 290 223-519 58-397 (644)
29 2jdq_A Importin alpha-1 subuni 99.9 2.7E-21 9.3E-26 204.1 29.7 275 222-500 108-391 (450)
30 2z6g_A B-catenin; FULL-length, 99.9 3.6E-21 1.2E-25 218.2 29.5 296 222-519 151-491 (780)
31 3tt9_A Plakophilin-2; cell adh 99.9 1.4E-22 5E-27 195.3 15.0 194 264-458 9-230 (233)
32 2kr4_A Ubiquitin conjugation f 99.9 3.5E-23 1.2E-27 168.0 5.4 74 23-97 9-82 (85)
33 2z6g_A B-catenin; FULL-length, 99.9 6.1E-21 2.1E-25 216.4 25.8 274 223-503 362-667 (780)
34 1wgm_A Ubiquitin conjugation f 99.9 9.5E-23 3.2E-27 169.7 8.0 78 22-100 16-94 (98)
35 2kre_A Ubiquitin conjugation f 99.9 6.8E-23 2.3E-27 171.2 6.1 75 22-97 23-97 (100)
36 2f42_A STIP1 homology and U-bo 99.9 2E-22 7E-27 184.5 7.4 79 21-99 99-177 (179)
37 4db6_A Armadillo repeat protei 99.9 3.3E-20 1.1E-24 175.7 22.7 191 223-413 14-209 (210)
38 3opb_A SWI5-dependent HO expre 99.9 2.6E-20 8.8E-25 204.9 24.1 277 223-502 378-731 (778)
39 4db6_A Armadillo repeat protei 99.9 4.8E-20 1.6E-24 174.6 22.3 195 302-499 10-209 (210)
40 1t1h_A Gspef-atpub14, armadill 99.8 5.1E-21 1.7E-25 152.9 6.4 76 22-97 2-77 (78)
41 3opb_A SWI5-dependent HO expre 99.8 8.7E-19 3E-23 192.8 22.7 273 223-499 336-683 (778)
42 2c2l_A CHIP, carboxy terminus 99.8 2.6E-20 8.7E-25 185.6 6.6 80 20-99 200-279 (281)
43 2yu4_A E3 SUMO-protein ligase 99.8 5.2E-20 1.8E-24 152.3 5.8 76 24-99 3-87 (94)
44 1xqr_A HSPBP1 protein; armadil 99.8 1.3E-17 4.6E-22 167.0 23.1 222 276-500 53-288 (296)
45 1xqr_A HSPBP1 protein; armadil 99.8 1E-16 3.6E-21 160.5 25.6 232 223-456 30-286 (296)
46 3ztg_A E3 ubiquitin-protein li 99.7 4.3E-17 1.5E-21 134.3 9.0 78 20-97 5-85 (92)
47 2bay_A PRE-mRNA splicing facto 99.6 5.4E-17 1.8E-21 122.3 2.5 54 28-82 3-57 (61)
48 3m62_A Ubiquitin conjugation f 99.6 1.5E-16 5.2E-21 176.7 5.8 74 23-97 886-960 (968)
49 3fl2_A E3 ubiquitin-protein li 99.6 8.2E-16 2.8E-20 133.9 5.3 71 24-94 48-119 (124)
50 3htk_C E3 SUMO-protein ligase 99.6 1E-15 3.5E-20 146.5 3.3 71 24-94 177-251 (267)
51 1z6u_A NP95-like ring finger p 99.5 2.4E-15 8.4E-20 135.0 5.3 70 24-93 74-144 (150)
52 2y43_A E3 ubiquitin-protein li 99.5 1.5E-14 5.2E-19 120.6 4.2 71 24-95 18-89 (99)
53 2egp_A Tripartite motif-contai 99.5 2E-15 6.9E-20 120.4 -1.9 66 22-87 6-77 (79)
54 2ecw_A Tripartite motif-contai 99.5 1.6E-14 5.4E-19 116.7 2.4 67 21-87 12-83 (85)
55 2ckl_A Polycomb group ring fin 99.4 3.6E-14 1.2E-18 120.3 4.7 68 24-92 11-83 (108)
56 3lrq_A E3 ubiquitin-protein li 99.4 3.5E-14 1.2E-18 118.6 3.9 71 24-94 18-89 (100)
57 3grl_A General vesicular trans 99.4 1.5E-11 5.2E-16 132.2 24.9 276 221-500 21-343 (651)
58 3l11_A E3 ubiquitin-protein li 99.4 2.6E-14 8.7E-19 122.7 2.3 71 23-93 10-87 (115)
59 3hct_A TNF receptor-associated 99.4 6.3E-14 2.2E-18 120.8 4.1 70 22-91 12-81 (118)
60 2yur_A Retinoblastoma-binding 99.4 1.8E-13 6.2E-18 107.6 6.3 61 21-81 8-71 (74)
61 2ecv_A Tripartite motif-contai 99.4 2.5E-14 8.5E-19 115.5 1.3 67 21-87 12-83 (85)
62 2csy_A Zinc finger protein 183 99.4 9.1E-14 3.1E-18 111.4 4.2 66 22-89 9-74 (81)
63 1jm7_B BARD1, BRCA1-associated 99.4 5.7E-14 1.9E-18 120.9 3.1 69 24-95 18-87 (117)
64 2ecy_A TNF receptor-associated 99.4 3E-13 1E-17 103.8 6.6 57 22-78 9-65 (66)
65 2ckl_B Ubiquitin ligase protei 99.4 9.4E-14 3.2E-18 127.0 4.1 70 24-93 50-121 (165)
66 2djb_A Polycomb group ring fin 99.4 5.5E-13 1.9E-17 104.3 7.1 60 22-82 9-69 (72)
67 1jm7_A BRCA1, breast cancer ty 99.4 2.2E-13 7.4E-18 116.2 3.9 69 25-93 18-88 (112)
68 3grl_A General vesicular trans 99.4 1.4E-10 4.6E-15 124.9 25.7 278 222-500 61-395 (651)
69 4ayc_A E3 ubiquitin-protein li 99.3 4.2E-13 1.5E-17 118.9 4.1 64 26-92 51-114 (138)
70 2ysl_A Tripartite motif-contai 99.3 1.6E-12 5.6E-17 101.7 6.3 57 22-78 14-72 (73)
71 1g25_A CDK-activating kinase a 99.3 1.3E-12 4.5E-17 99.9 5.1 55 27-81 2-61 (65)
72 1rmd_A RAG1; V(D)J recombinati 99.3 5.6E-13 1.9E-17 114.4 3.2 71 21-91 16-87 (116)
73 3hcs_A TNF receptor-associated 99.3 9.9E-13 3.4E-17 120.8 4.9 69 23-91 13-81 (170)
74 2ysj_A Tripartite motif-contai 99.3 3E-12 1E-16 97.2 6.2 48 22-69 14-63 (63)
75 3knv_A TNF receptor-associated 99.3 4.1E-13 1.4E-17 119.2 0.3 67 24-90 27-102 (141)
76 3ng2_A RNF4, snurf, ring finge 99.2 4.9E-12 1.7E-16 98.4 3.5 59 23-82 5-70 (71)
77 2ecj_A Tripartite motif-contai 99.2 1.2E-11 4E-16 92.1 5.2 48 22-69 9-58 (58)
78 2ct2_A Tripartite motif protei 99.2 2E-11 6.9E-16 99.1 6.7 56 21-76 8-69 (88)
79 2d8t_A Dactylidin, ring finger 99.2 1.1E-11 3.7E-16 96.5 4.1 53 22-75 9-61 (71)
80 1oyz_A Hypothetical protein YI 99.2 2.8E-09 9.5E-14 105.0 21.3 223 223-499 25-250 (280)
81 2ea6_A Ring finger protein 4; 99.1 3.8E-11 1.3E-15 92.6 5.0 54 21-75 8-68 (69)
82 1e4u_A Transcriptional repress 99.1 4.7E-11 1.6E-15 94.4 5.5 57 22-78 5-65 (78)
83 3ltm_A Alpha-REP4; protein eng 99.1 4.7E-09 1.6E-13 98.9 20.4 187 261-501 17-205 (211)
84 2xeu_A Ring finger protein 4; 99.1 1.5E-11 5.3E-16 93.4 2.2 54 27-81 2-62 (64)
85 3ltm_A Alpha-REP4; protein eng 99.1 5.3E-09 1.8E-13 98.5 20.2 184 222-459 20-205 (211)
86 3ltj_A Alpharep-4; protein eng 99.1 8.5E-09 2.9E-13 96.3 20.2 180 223-456 16-197 (201)
87 2ect_A Ring finger protein 126 99.1 8.8E-11 3E-15 93.0 5.5 61 20-81 7-70 (78)
88 3ltj_A Alpharep-4; protein eng 99.1 7.6E-09 2.6E-13 96.6 19.4 184 262-499 13-198 (201)
89 4gmo_A Putative uncharacterize 99.0 4.5E-09 1.5E-13 117.2 14.5 194 304-498 34-257 (684)
90 1bor_A Transcription factor PM 98.9 2.2E-10 7.6E-15 84.6 2.2 46 26-75 4-49 (56)
91 4fdd_A Transportin-1; heat rep 98.9 1.3E-08 4.5E-13 116.1 17.5 272 221-500 128-430 (852)
92 4ap4_A E3 ubiquitin ligase RNF 98.9 3.2E-10 1.1E-14 99.2 2.9 55 26-81 5-66 (133)
93 2ep4_A Ring finger protein 24; 98.9 1.6E-09 5.5E-14 84.8 6.1 54 22-76 9-65 (74)
94 1chc_A Equine herpes virus-1 r 98.9 8.2E-10 2.8E-14 84.9 4.1 48 27-75 4-52 (68)
95 2ecn_A Ring finger protein 141 98.9 3.2E-10 1.1E-14 87.8 1.8 53 23-77 10-62 (70)
96 2ecm_A Ring finger and CHY zin 98.9 8.5E-10 2.9E-14 80.9 3.8 47 27-74 4-54 (55)
97 1oyz_A Hypothetical protein YI 98.9 1.1E-07 3.6E-12 93.6 19.6 197 261-498 21-220 (280)
98 2kiz_A E3 ubiquitin-protein li 98.8 4.3E-09 1.5E-13 81.1 6.4 53 22-75 8-63 (69)
99 1v87_A Deltex protein 2; ring- 98.8 2.8E-09 9.5E-14 90.8 5.1 52 24-75 21-94 (114)
100 4fdd_A Transportin-1; heat rep 98.8 1.2E-08 4.3E-13 116.4 12.1 268 223-501 176-473 (852)
101 2l0b_A E3 ubiquitin-protein li 98.8 2.6E-09 8.9E-14 87.2 4.5 51 24-75 36-89 (91)
102 1iym_A EL5; ring-H2 finger, ub 98.8 2.5E-09 8.4E-14 78.5 3.4 48 26-74 3-54 (55)
103 4ic3_A E3 ubiquitin-protein li 98.8 1.3E-09 4.3E-14 85.4 1.5 46 25-75 21-67 (74)
104 1ibr_B P95, importin beta-1 su 98.8 1.1E-07 3.8E-12 99.6 16.7 271 221-501 128-439 (462)
105 1x4j_A Ring finger protein 38; 98.8 4.1E-09 1.4E-13 82.7 3.8 50 25-75 20-72 (75)
106 1b3u_A Protein (protein phosph 98.7 7.8E-07 2.7E-11 96.2 22.3 260 224-498 90-352 (588)
107 1b3u_A Protein (protein phosph 98.7 2.2E-07 7.6E-12 100.5 17.4 258 224-499 327-587 (588)
108 2y1n_A E3 ubiquitin-protein li 98.7 6.2E-09 2.1E-13 106.0 4.6 49 28-76 332-380 (389)
109 2ecg_A Baculoviral IAP repeat- 98.7 8.6E-09 2.9E-13 80.9 2.8 46 25-75 22-68 (75)
110 4gmo_A Putative uncharacterize 98.6 1.1E-07 3.7E-12 106.0 12.3 190 222-412 35-257 (684)
111 1wim_A KIAA0161 protein; ring 98.6 5.8E-09 2E-13 85.7 1.4 67 26-93 3-83 (94)
112 4ap4_A E3 ubiquitin ligase RNF 98.6 5.4E-09 1.8E-13 91.3 1.3 57 25-82 69-132 (133)
113 2vgl_B AP-2 complex subunit be 98.6 4E-07 1.4E-11 99.7 14.6 260 220-502 48-314 (591)
114 2vgl_B AP-2 complex subunit be 98.5 2.3E-06 7.9E-11 93.6 19.4 260 224-499 124-419 (591)
115 2ecl_A Ring-box protein 2; RNF 98.5 8E-08 2.7E-12 76.4 3.9 48 27-75 14-76 (81)
116 2vje_A E3 ubiquitin-protein li 98.4 1.3E-07 4.5E-12 71.6 3.7 49 26-75 6-57 (64)
117 1w63_A Adapter-related protein 98.4 1.8E-05 6E-10 87.1 21.6 160 221-396 70-229 (618)
118 2vje_B MDM4 protein; proto-onc 98.4 1.4E-07 4.8E-12 71.2 3.1 48 27-75 6-56 (63)
119 2yho_A E3 ubiquitin-protein li 98.4 6.6E-08 2.3E-12 76.5 1.0 45 26-75 16-61 (79)
120 1qgr_A Protein (importin beta 98.4 1.7E-05 5.9E-10 89.9 20.9 272 221-501 128-439 (876)
121 2ea5_A Cell growth regulator w 98.3 6.7E-07 2.3E-11 68.5 5.6 49 22-75 9-58 (68)
122 3t6p_A Baculoviral IAP repeat- 98.3 8.7E-08 3E-12 97.0 0.8 45 26-75 293-338 (345)
123 1w63_A Adapter-related protein 98.3 7.1E-05 2.4E-09 82.2 23.6 249 223-501 144-416 (618)
124 2bpt_A Importin beta-1 subunit 98.3 8.9E-06 3E-10 92.2 16.6 264 224-500 372-669 (861)
125 3dpl_R Ring-box protein 1; ubi 98.3 6.2E-07 2.1E-11 74.9 4.4 47 27-74 36-100 (106)
126 2bpt_A Importin beta-1 subunit 98.2 3E-05 1E-09 87.8 18.1 269 222-500 135-441 (861)
127 1u6g_C TIP120 protein, CAND1; 98.1 6E-06 2.1E-10 97.9 11.4 269 222-502 7-287 (1230)
128 1qgr_A Protein (importin beta 98.1 3.4E-05 1.2E-09 87.5 17.1 267 224-500 175-480 (876)
129 2qk2_A LP04448P; mini spindles 98.0 3.3E-05 1.1E-09 74.1 12.3 178 225-413 19-205 (242)
130 2d8s_A Cellular modulator of i 98.0 5.5E-06 1.9E-10 65.4 5.3 51 25-75 12-70 (80)
131 1ho8_A Vacuolar ATP synthase s 98.0 0.00016 5.6E-09 75.3 17.0 221 276-497 181-474 (480)
132 2vgl_A Adaptor protein complex 98.0 0.00045 1.5E-08 75.9 21.5 144 219-375 72-217 (621)
133 1ibr_B P95, importin beta-1 su 98.0 3.6E-05 1.2E-09 80.3 12.2 229 223-458 174-438 (462)
134 4a0k_B E3 ubiquitin-protein li 97.9 1.4E-06 4.8E-11 73.9 0.0 46 29-75 49-112 (117)
135 3b2a_A TON_1937, putative unch 97.9 0.00013 4.4E-09 68.5 13.2 183 223-415 35-220 (265)
136 1u6g_C TIP120 protein, CAND1; 97.9 6.3E-05 2.1E-09 89.1 13.7 223 223-457 50-284 (1230)
137 2vgl_A Adaptor protein complex 97.9 0.0012 4E-08 72.5 22.8 251 224-500 149-434 (621)
138 1te4_A Conserved protein MTH18 97.9 1.8E-06 6.3E-11 74.8 -0.0 117 223-371 14-130 (131)
139 3b2a_A TON_1937, putative unch 97.8 0.00031 1.1E-08 66.0 14.5 219 264-497 34-259 (265)
140 2qk2_A LP04448P; mini spindles 97.8 0.00021 7.1E-09 68.4 13.5 182 308-501 19-207 (242)
141 2qk1_A Protein STU2; STU2P, XM 97.7 0.00019 6.4E-09 69.5 11.0 186 225-413 20-220 (249)
142 3tjz_B Coatomer subunit gamma; 97.5 0.0017 5.7E-08 65.9 15.7 263 225-519 72-339 (355)
143 3dad_A FH1/FH2 domain-containi 97.5 0.0012 4.1E-08 65.6 14.2 151 222-372 119-284 (339)
144 2iw3_A Elongation factor 3A; a 97.4 0.01 3.5E-07 67.7 22.1 254 224-499 57-324 (986)
145 3dad_A FH1/FH2 domain-containi 97.4 0.0037 1.3E-07 62.2 15.3 148 350-500 123-288 (339)
146 2qk1_A Protein STU2; STU2P, XM 97.2 0.0048 1.6E-07 59.4 14.5 191 309-503 21-224 (249)
147 2db0_A 253AA long hypothetical 97.2 0.12 3.9E-06 46.9 22.9 209 223-457 34-246 (253)
148 1te4_A Conserved protein MTH18 97.2 0.00057 1.9E-08 58.8 6.1 88 223-331 44-131 (131)
149 2db0_A 253AA long hypothetical 97.1 0.15 5E-06 46.2 21.8 212 262-500 31-247 (253)
150 1ho8_A Vacuolar ATP synthase s 97.1 0.013 4.5E-07 61.0 16.9 227 226-457 172-476 (480)
151 4ady_A RPN2, 26S proteasome re 97.1 0.074 2.5E-06 60.2 23.8 202 264-502 473-679 (963)
152 2ct0_A Non-SMC element 1 homol 96.8 0.0012 4.2E-08 50.9 4.8 48 28-75 15-64 (74)
153 1vyx_A ORF K3, K3RING; zinc-bi 96.6 0.0027 9.1E-08 46.9 5.1 49 27-75 5-59 (60)
154 3oc3_A Helicase MOT1, MOT1; re 96.5 0.017 5.9E-07 60.9 12.2 238 223-495 176-432 (800)
155 3tjz_B Coatomer subunit gamma; 96.4 0.027 9.1E-07 57.0 12.5 237 224-494 107-348 (355)
156 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0015 5.1E-08 53.7 2.2 33 27-59 2-37 (101)
157 3vk6_A E3 ubiquitin-protein li 96.2 0.0038 1.3E-07 50.3 3.8 46 30-75 3-49 (101)
158 2iw3_A Elongation factor 3A; a 96.1 0.34 1.2E-05 55.3 21.1 220 223-457 97-324 (986)
159 4ady_A RPN2, 26S proteasome re 96.0 0.61 2.1E-05 52.8 22.1 253 223-520 394-676 (963)
160 1wa5_C Importin alpha RE-expor 95.9 0.073 2.5E-06 61.2 14.6 254 236-499 376-670 (960)
161 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.0015 5.2E-08 64.7 -0.5 47 28-74 308-372 (381)
162 4ffb_C Protein STU2; tubulin f 95.6 0.23 7.9E-06 48.0 15.1 182 226-413 14-212 (278)
163 3i2d_A E3 SUMO-protein ligase 95.5 0.0085 2.9E-07 60.2 4.1 62 28-89 249-314 (371)
164 3ebb_A Phospholipase A2-activa 95.3 0.26 9E-06 48.6 14.0 144 350-497 152-304 (304)
165 4fo9_A E3 SUMO-protein ligase 94.7 0.023 7.7E-07 57.0 4.4 64 27-90 214-281 (360)
166 4ffb_C Protein STU2; tubulin f 94.6 0.66 2.3E-05 44.7 14.8 182 309-500 14-213 (278)
167 2fv2_A RCD1 required for cell 94.2 1.4 4.7E-05 42.0 15.1 140 360-499 16-174 (268)
168 2of3_A ZYG-9; multifunctional 93.7 1.6 5.3E-05 42.1 15.0 172 224-411 49-234 (266)
169 3ebb_A Phospholipase A2-activa 93.2 1.7 5.7E-05 42.8 14.6 185 265-452 105-301 (304)
170 3u0r_A Apoptosis inhibitor 5; 92.0 2.9 9.9E-05 43.4 14.8 128 223-369 31-158 (507)
171 1wa5_C Importin alpha RE-expor 91.9 5.8 0.0002 45.3 19.2 215 232-456 416-669 (960)
172 2fv2_A RCD1 required for cell 91.4 1.9 6.6E-05 41.0 11.8 133 362-500 73-225 (268)
173 2x1g_F Cadmus; transport prote 90.5 2.5 8.4E-05 48.3 14.3 211 233-457 476-722 (971)
174 3nw0_A Non-structural maintena 89.8 0.31 1.1E-05 46.3 4.9 48 28-75 180-229 (238)
175 3eg5_B Protein diaphanous homo 89.0 13 0.00046 37.5 16.8 171 224-396 69-274 (383)
176 2f31_A Diaphanous protein homo 87.9 13 0.00043 34.8 14.8 111 225-336 4-128 (233)
177 2x19_B Importin-13; nuclear tr 87.4 6 0.0002 44.9 14.5 153 231-395 459-621 (963)
178 2x1g_F Cadmus; transport prote 86.7 47 0.0016 37.6 22.3 133 316-457 476-615 (971)
179 1lrv_A LRV, leucine-rich repea 86.5 0.74 2.5E-05 43.8 5.2 62 230-326 59-120 (244)
180 1upk_A MO25 protein; transfera 85.6 18 0.0006 35.8 14.6 191 223-415 80-285 (341)
181 2of3_A ZYG-9; multifunctional 85.5 3.4 0.00012 39.7 9.3 132 231-373 97-235 (266)
182 3ibv_A Exportin-T; karyopherin 84.7 33 0.0011 39.2 18.8 216 223-458 8-261 (980)
183 1weo_A Cellulose synthase, cat 84.0 2.2 7.7E-05 33.3 5.8 49 27-75 15-70 (93)
184 2x19_B Importin-13; nuclear tr 83.0 24 0.00084 39.8 16.9 137 314-458 459-600 (963)
185 3oc3_A Helicase MOT1, MOT1; re 82.3 1.8 6.1E-05 45.9 6.2 214 264-498 175-403 (800)
186 2bnx_A Diaphanous protein homo 82.3 33 0.0011 34.6 15.8 168 224-393 7-210 (386)
187 3u0r_A Apoptosis inhibitor 5; 80.6 23 0.00078 36.8 13.6 121 315-456 39-162 (507)
188 2f31_A Diaphanous protein homo 80.3 27 0.00091 32.5 13.3 123 234-356 67-209 (233)
189 3l9t_A Putative uncharacterize 80.1 39 0.0013 31.6 14.4 140 223-383 72-217 (240)
190 1x5b_A Signal transducing adap 79.7 7.3 0.00025 34.4 8.6 71 427-500 54-126 (163)
191 3eg5_B Protein diaphanous homo 79.3 45 0.0015 33.6 15.5 124 234-357 133-276 (383)
192 3m1i_C Exportin-1; heat repeat 78.0 70 0.0024 36.6 18.6 217 222-458 17-264 (1049)
193 4hat_C Exportin-1; heat repeat 77.4 85 0.0029 36.0 18.8 216 221-457 16-263 (1023)
194 3qml_C Protein SLS1, nucleotid 77.0 24 0.00083 34.3 11.9 142 224-372 25-187 (315)
195 3mjh_B Early endosome antigen 75.7 0.63 2.2E-05 29.7 0.3 16 27-42 4-19 (34)
196 3ldz_A STAM-1, signal transduc 73.4 8.3 0.00028 33.1 6.9 71 427-500 44-115 (140)
197 2kkx_A Uncharacterized protein 73.1 2.9 0.0001 33.3 3.5 55 21-76 19-80 (102)
198 2jvx_A NF-kappa-B essential mo 72.9 1 3.4E-05 27.4 0.6 16 26-41 1-16 (28)
199 2bnx_A Diaphanous protein homo 71.7 64 0.0022 32.4 14.3 124 234-357 71-214 (386)
200 1x5b_A Signal transducing adap 71.0 12 0.00042 32.9 7.6 69 223-291 54-124 (163)
201 4hat_C Exportin-1; heat repeat 70.3 14 0.00047 42.6 9.9 138 233-374 465-618 (1023)
202 3c2g_A SYS-1 protein; beta-cat 69.8 59 0.002 32.4 12.6 110 286-396 265-377 (619)
203 1mhq_A ADP-ribosylation factor 69.3 13 0.00045 32.1 7.4 70 223-292 40-116 (148)
204 3g2s_A C-terminal fragment of 68.1 15 0.00052 31.8 7.5 90 426-518 49-147 (149)
205 1juq_A ADP-ribosylation factor 66.4 14 0.00047 32.9 7.0 70 223-292 52-128 (171)
206 3ldz_A STAM-1, signal transduc 65.7 15 0.00052 31.3 7.0 69 223-291 44-113 (140)
207 3gjx_A Exportin-1; transport, 65.1 93 0.0032 35.9 15.4 216 222-458 29-276 (1073)
208 6rxn_A Rubredoxin; electron tr 63.8 2.1 7.3E-05 29.3 0.9 13 24-36 26-38 (46)
209 1lrv_A LRV, leucine-rich repea 63.5 2.6 9E-05 39.9 1.8 21 307-327 173-193 (244)
210 3m1i_C Exportin-1; heat repeat 62.1 35 0.0012 39.2 11.3 101 232-334 464-570 (1049)
211 3a6p_A Exportin-5; exportin-5, 61.4 75 0.0026 37.1 14.0 137 223-374 13-162 (1204)
212 3ibv_A Exportin-T; karyopherin 60.4 1.3E+02 0.0046 34.2 15.6 185 223-413 42-260 (980)
213 4rxn_A Rubredoxin; electron tr 58.8 2.9 0.0001 29.6 0.9 14 23-36 31-44 (54)
214 3g2s_A C-terminal fragment of 58.2 31 0.0011 29.8 7.6 70 223-292 50-126 (149)
215 1e8j_A Rubredoxin; iron-sulfur 57.5 5.6 0.00019 27.9 2.1 14 23-36 31-44 (52)
216 1yk4_A Rubredoxin, RD; electro 54.2 3.9 0.00013 28.8 0.9 14 23-36 30-43 (52)
217 3vhs_A ATPase wrnip1; zinc fin 53.6 3.3 0.00011 24.1 0.3 12 28-39 6-17 (29)
218 1juq_A ADP-ribosylation factor 53.3 25 0.00085 31.2 6.3 75 427-504 52-133 (171)
219 2v3b_B Rubredoxin 2, rubredoxi 53.2 4 0.00014 29.0 0.8 14 23-36 31-44 (55)
220 2kn9_A Rubredoxin; metalloprot 52.8 6.9 0.00024 30.2 2.1 14 23-36 55-68 (81)
221 1mhq_A ADP-ribosylation factor 50.5 25 0.00086 30.3 5.7 75 426-503 39-120 (148)
222 3zyq_A Hepatocyte growth facto 50.2 32 0.0011 31.9 6.8 74 427-503 47-122 (226)
223 1dx8_A Rubredoxin; electron tr 50.1 4.8 0.00017 30.2 0.9 15 23-37 35-49 (70)
224 1lsh_A Lipovitellin (LV-1N, LV 47.1 1.1E+02 0.0036 35.3 11.9 126 224-376 443-578 (1056)
225 3c2g_A SYS-1 protein; beta-cat 46.0 2.4E+02 0.0082 28.1 13.3 157 238-396 260-448 (619)
226 1s24_A Rubredoxin 2; electron 45.9 6.2 0.00021 30.9 0.9 14 23-36 63-76 (87)
227 3zyq_A Hepatocyte growth facto 45.4 52 0.0018 30.4 7.5 70 223-292 47-118 (226)
228 3pwf_A Rubrerythrin; non heme 45.3 11 0.00037 33.5 2.6 30 23-72 133-162 (170)
229 1dvp_A HRS, hepatocyte growth 43.1 51 0.0018 30.2 7.0 69 223-291 44-114 (220)
230 2xqn_T Testin, TESS; metal-bin 42.6 12 0.00042 31.0 2.4 47 26-75 28-75 (126)
231 1elk_A Target of MYB1; superhe 42.5 68 0.0023 27.8 7.3 69 223-291 55-129 (157)
232 1m3v_A FLIN4, fusion of the LI 42.1 8.9 0.0003 31.8 1.4 52 26-78 30-84 (122)
233 1vdy_A Hypothetical protein (R 42.0 35 0.0012 29.1 5.2 71 428-501 52-132 (140)
234 3gae_A Protein DOA1; UFD3, CDC 41.8 50 0.0017 31.1 6.8 132 356-493 101-252 (253)
235 2o35_A Hypothetical protein DU 41.7 11 0.00036 30.1 1.6 13 49-61 42-54 (105)
236 3fyb_A Protein of unknown func 41.0 11 0.00037 29.9 1.6 13 49-61 41-53 (104)
237 1upk_A MO25 protein; transfera 40.7 2.7E+02 0.0094 27.3 24.5 204 259-467 74-296 (341)
238 2ee8_A Protein ODD-skipped-rel 40.3 45 0.0015 25.8 5.4 18 24-41 13-30 (106)
239 3qml_C Protein SLS1, nucleotid 39.7 2.4E+02 0.0083 27.3 11.2 99 229-331 78-187 (315)
240 3l9t_A Putative uncharacterize 39.6 1.5E+02 0.0052 27.6 9.5 139 265-422 73-217 (240)
241 2jne_A Hypothetical protein YF 38.5 8.3 0.00028 30.6 0.6 40 29-74 33-72 (101)
242 2d8x_A Protein pinch; LIM doma 37.5 25 0.00085 25.5 3.2 36 26-61 29-65 (70)
243 3a6p_A Exportin-5; exportin-5, 36.9 1.2E+02 0.004 35.4 10.3 177 231-414 57-277 (1204)
244 2cs3_A Protein C14ORF4, MY039 36.6 24 0.00083 26.9 2.8 37 25-61 12-52 (93)
245 2xjy_A Rhombotin-2; oncoprotei 35.9 21 0.0007 29.7 2.8 49 26-75 27-78 (131)
246 2jtn_A LIM domain-binding prot 35.3 39 0.0013 29.9 4.7 48 26-76 85-132 (182)
247 3pst_A Protein DOA1; protein d 35.0 1.3E+02 0.0045 30.6 8.9 99 273-374 272-389 (425)
248 3gae_A Protein DOA1; UFD3, CDC 34.4 37 0.0013 32.1 4.5 99 273-374 100-217 (253)
249 1wig_A KIAA1808 protein; LIM d 34.3 13 0.00043 27.7 1.0 35 26-60 29-65 (73)
250 2rgt_A Fusion of LIM/homeobox 34.3 35 0.0012 29.8 4.1 48 26-76 31-78 (169)
251 2dar_A PDZ and LIM domain prot 34.1 27 0.00093 26.9 3.0 30 27-56 50-80 (90)
252 3gs3_A Symplekin, LD45768P; he 33.2 3.1E+02 0.011 25.7 11.6 104 223-331 55-171 (257)
253 2l4z_A DNA endonuclease RBBP8, 33.1 25 0.00087 29.1 2.8 38 28-74 61-99 (123)
254 1x61_A Thyroid receptor intera 32.8 50 0.0017 23.9 4.2 36 26-61 31-67 (72)
255 2d8z_A Four and A half LIM dom 32.7 30 0.001 25.0 3.0 34 26-59 29-63 (70)
256 1dvp_A HRS, hepatocyte growth 32.5 90 0.0031 28.5 6.9 71 427-500 44-116 (220)
257 1rut_X Flinc4, fusion protein 31.4 12 0.00043 33.5 0.7 49 26-75 30-81 (188)
258 2eps_A POZ-, at HOOK-, and zin 31.4 1.1E+02 0.0036 20.3 5.5 38 27-75 11-53 (54)
259 1x6a_A LIMK-2, LIM domain kina 31.3 40 0.0014 25.2 3.5 36 26-61 39-77 (81)
260 1nyp_A Pinch protein; LIM doma 30.6 24 0.00082 25.3 2.0 32 26-57 29-61 (66)
261 2cur_A Skeletal muscle LIM-pro 30.6 44 0.0015 24.1 3.5 35 26-60 29-64 (69)
262 4atg_A TAF6; transcription, TF 29.7 2.7E+02 0.0091 25.0 9.2 153 224-395 14-177 (196)
263 1elk_A Target of MYB1; superhe 28.0 1.2E+02 0.0042 26.1 6.5 71 427-499 55-130 (157)
264 3uk3_C Zinc finger protein 217 26.7 23 0.00079 23.8 1.3 37 28-75 4-44 (57)
265 3vld_A DNA mismatch repair pro 26.4 2.9E+02 0.0099 28.6 9.8 91 223-319 118-211 (500)
266 2cup_A Skeletal muscle LIM-pro 25.8 44 0.0015 26.1 3.0 47 26-75 31-78 (101)
267 1lsh_A Lipovitellin (LV-1N, LV 25.5 7.9E+02 0.027 28.0 20.7 129 307-454 394-540 (1056)
268 3pst_A Protein DOA1; protein d 25.5 5.1E+02 0.018 26.2 11.4 131 356-492 273-423 (425)
269 1x62_A C-terminal LIM domain p 25.5 33 0.0011 25.7 2.0 27 28-54 15-41 (79)
270 2cor_A Pinch protein; LIM doma 25.1 33 0.0011 25.7 2.0 31 26-56 39-69 (79)
271 1x64_A Alpha-actinin-2 associa 25.0 33 0.0011 26.3 2.0 34 26-59 49-83 (89)
272 3l3f_X Protein DOA1, DOA1/UFD3 24.7 1E+02 0.0034 30.8 5.9 99 273-374 209-326 (362)
273 1wyh_A SLIM 2, skeletal muscle 24.5 40 0.0014 24.4 2.3 33 26-58 31-64 (72)
274 1l8d_A DNA double-strand break 24.2 16 0.00053 29.8 -0.1 13 63-75 47-59 (112)
275 2dj7_A Actin-binding LIM prote 23.9 27 0.00093 26.4 1.3 32 26-57 40-71 (80)
276 1j2o_A FLIN2, fusion of rhombo 23.7 71 0.0024 25.7 3.9 36 26-61 28-66 (114)
277 1lko_A Rubrerythrin all-iron(I 23.5 20 0.00069 32.3 0.5 9 64-72 172-180 (191)
278 2l3k_A Rhombotin-2, linker, LI 23.3 42 0.0014 27.6 2.5 36 26-61 34-71 (123)
279 2yt9_A Zinc finger-containing 23.1 67 0.0023 24.1 3.5 15 27-41 6-20 (95)
280 1iml_A CRIP, cysteine rich int 22.3 50 0.0017 24.3 2.5 44 26-72 25-70 (76)
281 3gjx_A Exportin-1; transport, 22.1 9.2E+02 0.032 27.5 19.0 215 265-500 30-276 (1073)
282 2ebt_A Krueppel-like factor 5; 21.9 1.2E+02 0.004 22.8 4.8 20 22-41 9-30 (100)
283 2lv2_A Insulinoma-associated p 21.0 48 0.0016 25.4 2.2 39 26-75 26-68 (85)
284 1x4l_A Skeletal muscle LIM-pro 20.1 63 0.0022 23.4 2.7 31 26-56 33-64 (72)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=4.9e-30 Score=264.02 Aligned_cols=264 Identities=21% Similarity=0.212 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCC-ccHHHHHhc-
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-----------RYSIVQTNAVASLVNLSLEK-KNKVLIVRS- 303 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~a~~~L~nLs~~~-~~k~~i~~~- 303 (537)
.+..|+++|.+++.+ +++|..+.+.|+++.|+.+|.+ .++.++..|+++|.||+.++ .++..+...
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 344789999999975 7999999999999999999952 24679999999999999865 478777654
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHh-ccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHAL-RAESERTRHDSALALYHLTL-IQSNR 379 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n~ 379 (537)
|.||.|+.+|.+++.++++.|+++|.+|+.. +++|..|.+.|+++.|+++| +++++.+++.|+.+|+||+. .++|+
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5599999999999999999999999999985 56899999999999999975 55788999999999999998 77899
Q ss_pred HHHH-hcCcHHHHHHHhcCCc------hHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHH
Q 009320 380 VKLV-KLNAVATLLTMVKSGE------STSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 380 ~~iv-~~g~v~~Lv~lL~~~~------~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
..++ ..|+++.|+++|..+. ..+.++++|.||+. .++++..+.+.|+++.|+++|.+ ++..+++.|
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~A 283 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNA 283 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---SCHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---CChHHHHHH
Confidence 9998 7999999999997532 57789999999996 88999999999999999999998 889999999
Q ss_pred HHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 449 VAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 449 ~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
+++|++|+.++...++.+.+.|+++.|++++.++++++++.|+.+|++|....++.
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999877788888899999999999999999999999999999999986654
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.6e-29 Score=269.82 Aligned_cols=275 Identities=19% Similarity=0.246 Sum_probs=241.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
++.||++|++++++.|..|+..|++++..++..+..+.+.|+||.|+.+|.+++++++..|+++|.||+.+ ++++..|+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 57899999999999999999999999988888898999999999999999999999999999999999986 89999999
Q ss_pred hcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc--------cC--------CHHHHHH
Q 009320 302 RSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR--------AE--------SERTRHD 364 (537)
Q Consensus 302 ~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~--------~~--------~~~~~~~ 364 (537)
+.|++++|+++|. +++.++++.|+++|++|+..+++|..|.+ |+++.|+.+|. +. ++.+.+.
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 9999999999999 88999999999999999999999999999 99999999993 22 3456679
Q ss_pred HHHHHHHhhcChhhHHHHHhc-CcHHHHHHHhcC--------CchHHHHHHHHHHHhcCh--------------------
Q 009320 365 SALALYHLTLIQSNRVKLVKL-NAVATLLTMVKS--------GESTSRVLLILCNLAASN-------------------- 415 (537)
Q Consensus 365 A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~--------~~~~~~al~~L~nLa~~~-------------------- 415 (537)
|+++|+||+..++++..+++. |+++.|+.+|.+ ....+.++.+|.||+...
T Consensus 163 a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T 1xm9_A 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence 999999999999999999997 999999999973 346788999999997321
Q ss_pred -------------------------------hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH---
Q 009320 416 -------------------------------EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR--- 461 (537)
Q Consensus 416 -------------------------------~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~--- 461 (537)
++.+.+++.++++.|+.+|.. ..++.+++.|+++|++||.++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh--cCCHHHHHHHHHHHHHhccCcCcchH
Confidence 122344556778999999987 35789999999999999986532
Q ss_pred -H-HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 462 -F-KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 462 -~-~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
. +..+.+.|+++.|++++.+++.++++.|+++|++|+..
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 2 34555789999999999999999999999999999875
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=7.9e-29 Score=268.50 Aligned_cols=292 Identities=21% Similarity=0.253 Sum_probs=246.7
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--KKNKV 298 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~~~k~ 298 (537)
..++.||++|.+++++.|..|++.|++++..++.+|..+.+.|+||.|+.+|.+++.++++.|+++|.||+.+ ++||.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4578999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc------------------cCCH
Q 009320 299 LIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR------------------AESE 359 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~------------------~~~~ 359 (537)
.|++.|+|++|+.+|.+ ++.+++++|+.+|++|+..+++|..|++ ++++.|+++|. ..++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 57999999872 1246
Q ss_pred HHHHHHHHHHHHhhcCh-hhHHHHHh-cCcHHHHHHHhcC--------CchHHHHHHHHHHHhcChh-------------
Q 009320 360 RTRHDSALALYHLTLIQ-SNRVKLVK-LNAVATLLTMVKS--------GESTSRVLLILCNLAASNE------------- 416 (537)
Q Consensus 360 ~~~~~A~~aL~nLs~~~-~n~~~iv~-~g~v~~Lv~lL~~--------~~~~~~al~~L~nLa~~~~------------- 416 (537)
.++.+|+++|+||+... ++|..|++ .|+++.|+.+|.+ ....+.|+.+|.|||...+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 89999999999999876 45888988 5778899999863 2367889999999997521
Q ss_pred -------------hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC----hHHHHHHHHCCcHHHHHHHH
Q 009320 417 -------------GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN----LRFKGLAKEARAAEVLREVE 479 (537)
Q Consensus 417 -------------~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~----~~~~~~i~~~g~i~~L~~ll 479 (537)
+...+++.++|+.|+.+|.. ..++.++|.|+++|++||.+. ...+..+.+.++++.|++|+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~--s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKE--SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 12223344557788999975 257999999999999999865 23445666789999999999
Q ss_pred HhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCcccc
Q 009320 480 ERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTRS 521 (537)
Q Consensus 480 ~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~~~~ 521 (537)
.++++++++.|+++|++|+..... + .+++.|++.+.
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~-----~-~~I~~g~ip~L 400 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARN-----K-ELIGKHAIPNL 400 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSC-----H-HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhH-----H-HHHHhCCHHHH
Confidence 999999999999999999987432 2 34456666544
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=261.40 Aligned_cols=260 Identities=21% Similarity=0.224 Sum_probs=233.5
Q ss_pred HHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCCc-cHHHHHh-cCCH
Q 009320 240 EGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-----------RYSIVQTNAVASLVNLSLEKK-NKVLIVR-SGFV 306 (537)
Q Consensus 240 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~a~~~L~nLs~~~~-~k~~i~~-~g~v 306 (537)
+|+++|.+++.+ +++|..+.+.|+++.|+.+|.. .++.++.+|+++|.||+.+++ ++..+.. .|.|
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 799999999864 8999999999999999999952 246789999999999998654 6767765 4569
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHh-ccCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHAL-RAESERTRHDSALALYHLTL-IQSNRVKL 382 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n~~~i 382 (537)
++|+.+|.+++.++++.|+++|.+|+.. +++|..|.+.|+++.|+++| .++++.+++.|+.+|+||+. .++++..+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999985 46889999999999999975 55688999999999999999 78999999
Q ss_pred H-hcCcHHHHHHHhcCCc------hHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 383 V-KLNAVATLLTMVKSGE------STSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 383 v-~~g~v~~Lv~lL~~~~------~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
+ ..|+++.|+++|..+. ..+.++++|.||+. .++++..+.+.|+++.|+++|.+ ++..+++.|+++
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~~a 402 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNACGT 402 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC---CChHHHHHHHHH
Confidence 8 7999999999997532 57789999999995 78999999999999999999988 789999999999
Q ss_pred HHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 452 LFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 452 L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
|++|+.++...++.+.+.|+++.|++++.++++++++.|+++|++|....++
T Consensus 403 L~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 403 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 9999987778888889999999999999999999999999999999987654
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=251.71 Aligned_cols=294 Identities=20% Similarity=0.199 Sum_probs=244.9
Q ss_pred HHHHHHHhcC------------CCHHHHHHHHHHHHHhhccChHHHHHhhcCChH----------HHHHHHHccCC--HH
Q 009320 223 EEELSKKLRS------------ADIALQEEGVIALRRLTRTNEELRVSICTPNLL----------SALRNLVVSRY--SI 278 (537)
Q Consensus 223 ~~~Lv~~L~s------------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~s~~--~~ 278 (537)
++.||++|+. ++.+.+.+|+++|.+++...++......+.|++ +.+++++.+.. .+
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMD 151 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSC
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Confidence 5789999964 337999999999999999888888887888888 66677776542 11
Q ss_pred -----HHH-------HHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHcccCc
Q 009320 279 -----VQT-------NAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS-----------GSEESQEHAAGALFSLALED 335 (537)
Q Consensus 279 -----v~~-------~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~-----------~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
+.+ .|+++|.|++.++++|..|++.|++++|+.+|.. .+++++.+|+++|.+|+..+
T Consensus 152 ~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~ 231 (458)
T 3nmz_A 152 QDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 231 (458)
T ss_dssp CCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC
Confidence 333 8999999999999999999999999999999952 24678999999999999877
Q ss_pred c-hhhHHhh-cCchHHHHHHhccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhcCcHHHHHHHhc-CC--chHHHHHHHH
Q 009320 336 E-NKMAIGV-LGALQPLMHALRAESERTRHDSALALYHLTLI--QSNRVKLVKLNAVATLLTMVK-SG--ESTSRVLLIL 408 (537)
Q Consensus 336 ~-~k~~I~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~-~~--~~~~~al~~L 408 (537)
+ +|..+.. .|+++.|+.+|.++++.++..|+++|.||+.. ++++..++++|+|+.|+++|. .+ ...+.++.+|
T Consensus 232 ~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL 311 (458)
T 3nmz_A 232 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6 6767754 57799999999999999999999999999984 679999999999999999864 33 3567799999
Q ss_pred HHHhc-ChhhHHHHH-hCCcHHHHHHHHhccCCC-CHHHHHHHHHHHHHhhc---CChHHHHHHHHCCcHHHHHHHHHhC
Q 009320 409 CNLAA-SNEGRSAIL-DANGVSILVGMLRESGSD-SEATRENCVAALFALGH---GNLRFKGLAKEARAAEVLREVEERG 482 (537)
Q Consensus 409 ~nLa~-~~~~r~~i~-~~g~I~~Lv~lL~~~~~~-~~~~~e~A~~~L~~L~~---~~~~~~~~i~~~g~i~~L~~ll~~~ 482 (537)
+||+. +++++..+. ..|+++.|+++|...... ...+++.|+++|++|+. +++..++.+.+.|+++.|+.++.++
T Consensus 312 ~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 312 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS
T ss_pred HHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC
Confidence 99999 778898888 789999999999872100 11589999999999997 6777888899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCccc
Q 009320 483 SQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTR 520 (537)
Q Consensus 483 s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~~~ 520 (537)
+..+++.|+++|++|+...++ ....|++.|++..
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~----~~~~i~~~G~I~~ 425 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPK----DQEALWDMGAVSM 425 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHH----HHHHHHHHTHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCHH----HHHHHHHCCCHHH
Confidence 999999999999999965222 3466778887654
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=2e-26 Score=257.64 Aligned_cols=292 Identities=17% Similarity=0.203 Sum_probs=250.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-----------------------------HHH---HHhhcCChHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNE-----------------------------ELR---VSICTPNLLSALR 269 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~~Lv 269 (537)
.++.||++|++++...+..|++.|.|++...+ ..+ +.+.+.|++|.|+
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 36899999999999999999999999997542 223 6778999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh---hcCc
Q 009320 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG---VLGA 346 (537)
Q Consensus 270 ~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~---~~g~ 346 (537)
.+|.++++.+++.|+++|.||+.+++++..+++.|++++|+.+|.+++...++.|+++|.+|+...+....+. ..++
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~a 581 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDV 581 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcH
Confidence 9999999999999999999999988899999999999999999999999999999999999987655443332 2469
Q ss_pred hHHHHHHhccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHH
Q 009320 347 LQPLMHALRAE-SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 347 l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+++|+.+|.++ +...+..|+++|.||+.. ++++..++++|+++.|+++|.+++ ++..|+.+|+||+..++.+..+.
T Consensus 582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v 661 (810)
T 3now_A 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE 661 (810)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999866 445567899999999986 578999999999999999997644 67779999999999999988888
Q ss_pred h-CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH-CCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 423 D-ANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE-ARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 423 ~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~-~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+ .|+++.|+.++.. .+..+++.|+++|.+|+.+++...+.+.+ .|+++.|+.++.+++.++|+.|.++|.++...
T Consensus 662 ~~~g~l~~Lv~LL~s---~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 662 GNNDRVKFLALLCED---EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SSSSHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred hccCcHHHHHHHhcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 5 6889999999988 78999999999999999966555555566 89999999999999999999999999999875
Q ss_pred CCCCcchhhhhhhhcCCccc
Q 009320 501 EDDDEDVDWEGVLDSGGLTR 520 (537)
Q Consensus 501 ~~e~~~~d~~~v~~~g~~~~ 520 (537)
.++ .-+.|++.|++.-
T Consensus 739 s~e----~~~~l~e~G~i~~ 754 (810)
T 3now_A 739 GEE----IAKKLFETDIMEL 754 (810)
T ss_dssp CHH----HHHHHHTSTHHHH
T ss_pred CHH----HHHHHHHCCCHHH
Confidence 321 2366677776543
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=2.2e-26 Score=245.61 Aligned_cols=278 Identities=18% Similarity=0.153 Sum_probs=237.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
.++.||++|++++++.+..|++.|++|+..+++++..+.+.|+||.|+.+|. ++++++++.|+++|.||+.++++|..+
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 4689999999999999999999999999988999999999999999999998 889999999999999999999999999
Q ss_pred HhcCCHHHHHHHHc--------cC--------CHHHHHHHHHHHHHcccCcchhhHHhhc-CchHHHHHHhccC------
Q 009320 301 VRSGFVPLLIDVLK--------SG--------SEESQEHAAGALFSLALEDENKMAIGVL-GALQPLMHALRAE------ 357 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~-g~l~~Lv~lL~~~------ 357 (537)
++ |++++|+.+|. ++ +.+++..|+++|++|+..++++..+.+. |+++.|+.+|.++
T Consensus 125 ~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 125 IA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred Hh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 99 99999999993 22 3456669999999999988888888887 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 009320 358 -------------------------------------------------------------------------------- 357 (537)
Q Consensus 358 -------------------------------------------------------------------------------- 357 (537)
T Consensus 204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH
T ss_pred chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcc
Confidence
Q ss_pred -------------CHHHHHHHHHHHHHhhcChh-----hHHHHH-hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh
Q 009320 358 -------------SERTRHDSALALYHLTLIQS-----NRVKLV-KLNAVATLLTMVKSGE--STSRVLLILCNLAASNE 416 (537)
Q Consensus 358 -------------~~~~~~~A~~aL~nLs~~~~-----n~~~iv-~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~ 416 (537)
++..++.|+++|.||+.... ....++ ++|+++.|+++|.+++ .+..|+++|.||+.+++
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 23455667899999986432 212344 6899999999998765 56779999999999988
Q ss_pred hHHHHHhCCcHHHHHHHHhccCC---CCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC-CHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGS---DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG-SQRAKEKAKR 492 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~---~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~-s~~~k~~A~~ 492 (537)
.+..+.. ++++.|+++|..... .++++...++++|.++..++......+.+.|+++.|+.++.++ +++++++|..
T Consensus 364 ~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 364 LHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp GHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 8877764 789999999987311 1357888999999999988777888888999999999999999 9999999999
Q ss_pred HHHHhhcCC
Q 009320 493 ILEMLKGRE 501 (537)
Q Consensus 493 lL~~L~~~~ 501 (537)
+|.++..++
T Consensus 443 ~L~~~~~~~ 451 (457)
T 1xm9_A 443 LLSDMWSSK 451 (457)
T ss_dssp HHHTTSSST
T ss_pred HHHHHHcch
Confidence 999988663
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=2.8e-25 Score=240.69 Aligned_cols=278 Identities=19% Similarity=0.167 Sum_probs=230.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRT-NEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKV 298 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~ 298 (537)
..++.||++|++++.++|..|+++|++|+.. ++++|..|.+.|+||.|+.+|.+ .+.++++.++.+|.||+.++++|.
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~ 169 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence 3478999999999999999999999999985 68999999999999999999987 688999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHc------------------cCCHHHHHHHHHHHHHcccCcc-hhhHHhh-cCchHHHHHHhcc--
Q 009320 299 LIVRSGFVPLLIDVLK------------------SGSEESQEHAAGALFSLALEDE-NKMAIGV-LGALQPLMHALRA-- 356 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~-~g~l~~Lv~lL~~-- 356 (537)
.|++ +++++|+++|. ..+.+++++|+++|+||+...+ +|..|.+ .|+++.||.+|++
T Consensus 170 ~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~ 248 (584)
T 3l6x_A 170 EIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248 (584)
T ss_dssp HHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 9996 56999999872 1247899999999999998764 4777775 4556677666542
Q ss_pred ------------------------------------------------------------------------CCHHHHHH
Q 009320 357 ------------------------------------------------------------------------ESERTRHD 364 (537)
Q Consensus 357 ------------------------------------------------------------------------~~~~~~~~ 364 (537)
.++.+++.
T Consensus 249 ~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~ 328 (584)
T 3l6x_A 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328 (584)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHH
Confidence 12344556
Q ss_pred HHHHHHHhhcCh-----hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc
Q 009320 365 SALALYHLTLIQ-----SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES 437 (537)
Q Consensus 365 A~~aL~nLs~~~-----~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~ 437 (537)
|++||.||+... .++..+.+.|+++.|+++|..++ ....++++|.||+.++.++..| ..|+++.|+.+|...
T Consensus 329 Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCC
Confidence 666777776432 23333445789999999998654 5667999999999999888877 578999999999873
Q ss_pred CCC-----CHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHHHHHHHHhhcC
Q 009320 438 GSD-----SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG--SQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 438 ~~~-----~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A~~lL~~L~~~ 500 (537)
+.. +..++..|+++|.+|+..+...++.+.+.|+++.|+.++.++ ++.+++.|+.+|.+|..+
T Consensus 408 ~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 111 578899999999999998888888999999999999999986 899999999999999876
No 9
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=4.9e-26 Score=234.21 Aligned_cols=236 Identities=25% Similarity=0.244 Sum_probs=209.9
Q ss_pred hHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHH
Q 009320 222 EEEELSKKLRS-----------ADIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVSRYSIVQTNAVASLVN 289 (537)
Q Consensus 222 ~~~~Lv~~L~s-----------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~n 289 (537)
.++.|++.|.+ .++..|..|++.|.+|++.++.++..+.. .|+||.|+.+|.++++++++.|+++|.|
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 153 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35778888842 24678999999999999988888888865 5569999999999999999999999999
Q ss_pred hcCC--CccHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHccc-CcchhhHHh-hcCchHHHHHHhccCCH----H
Q 009320 290 LSLE--KKNKVLIVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLAL-EDENKMAIG-VLGALQPLMHALRAESE----R 360 (537)
Q Consensus 290 Ls~~--~~~k~~i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~-~~g~l~~Lv~lL~~~~~----~ 360 (537)
|+.. +++|..+++.|+|++|+.+| ++++.++++.|+.+|++|+. .+++|..|. ..|+++.|+++|.++++ .
T Consensus 154 Ls~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~ 233 (354)
T 3nmw_A 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233 (354)
T ss_dssp HHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCH
T ss_pred HhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHH
Confidence 9984 46899999999999999975 66789999999999999998 668899998 68999999999988754 5
Q ss_pred HHHHHHHHHHHhhc----ChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHH
Q 009320 361 TRHDSALALYHLTL----IQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 361 ~~~~A~~aL~nLs~----~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~l 433 (537)
+++.|+++|+||+. .++++..++++|+++.|+++|.+++ .++.|+++|.||+. .++++..+.+.|+|+.|+++
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~L 313 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHH
Confidence 89999999999996 8899999999999999999998765 57779999999995 78899999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCCh
Q 009320 434 LRESGSDSEATRENCVAALFALGHGNL 460 (537)
Q Consensus 434 L~~~~~~~~~~~e~A~~~L~~L~~~~~ 460 (537)
|.+ ++..+++.|+++|.+|+.+.+
T Consensus 314 L~s---~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 314 IHS---KHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TTC---SSHHHHHHHHHHHHHHHTTCC
T ss_pred HhC---CCHHHHHHHHHHHHHHHcCCH
Confidence 988 789999999999999998654
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1.2e-25 Score=243.23 Aligned_cols=289 Identities=17% Similarity=0.183 Sum_probs=246.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcC-CCccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSL-EKKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~-~~~~k~~ 299 (537)
++.+|+.|.|++.+.|..|+..+|.+ +++.......+.+.|+||.|+.+|. ++++.+|..|+++|.||+. +++++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 78999999999999999999999975 4544444677889999999999997 4568999999999999987 5678899
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCC-----HHHHHHHHHHHHHhh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAES-----ERTRHDSALALYHLT 373 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~-----~~~~~~A~~aL~nLs 373 (537)
+++.|+||.|+.+|.+++.++++.|+++|.+|+.+. ..+..+.+.|+++.|+.+|...+ ....+.++++|.+++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999864 57888889999999999998753 457789999999999
Q ss_pred cChhhHHHHH-hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 374 LIQSNRVKLV-KLNAVATLLTMVKSGE--STSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 374 ~~~~n~~~iv-~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
........+. ..|+++.|+++|.+.+ ....++++|.+|+..+. ....+.+.|+++.|+++|.+ .+..++..|+
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~al 295 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTPAL 295 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC---CChhhhhHHH
Confidence 8765544443 4689999999998655 56669999999998764 55667789999999999988 7899999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
.+|++|+.+++.....+.+.|+++.|+.++.+.++.+++.|+++|.+|....++ ..+.|++.|.+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~----~~~~v~~~g~i 360 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD----QIQQVVNHGLV 360 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH----HHHHHHhcCCH
Confidence 999999998888888889999999999999999999999999999999876332 23455555544
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=4.1e-25 Score=238.98 Aligned_cols=276 Identities=16% Similarity=0.166 Sum_probs=245.1
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.||++|+ ++++..|..|+++|.+++..+++++..+.+.|+||.|+.+|.+++.++++.|+++|.||+.+ +.++..
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3689999995 56789999999999999988999999999999999999999999999999999999999986 567888
Q ss_pred HHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 300 IVRSGFVPLLIDVLKSGS-----EESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
+.+.|++++|+.+|...+ ...+..++++|.+++.+......+. ..++++.|+.+|.+.++.++..|+++|.+|+
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 889999999999998654 4577889999999998776555444 4789999999999999999999999999999
Q ss_pred cChhhH-HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 374 LIQSNR-VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 374 ~~~~n~-~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
....++ ..+++.|+++.|+++|.+.+ .+..++.+|.|++... +.+..+.+.|+++.|+.+|.+ .+..+++.|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~v~~~A~ 337 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEAT 337 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC---SSHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC---CCHHHHHHHH
Confidence 876554 55568999999999998665 5666999999998754 677888999999999999987 7899999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
++|.+|+.++......+.+.|+++.|+.++.+++..+|+.|+++|.++...
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 999999999888888889999999999999999999999999999999865
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=1.2e-24 Score=236.46 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=246.2
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.||++|. ++++..|..|+++|.+++..++.++..+.+.|+||.|+.+|.+++.++++.|+++|.||+.+ ++++..
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~ 199 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL 199 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4689999995 66799999999999999998899999999999999999999999999999999999999985 578899
Q ss_pred HHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 300 IVRSGFVPLLIDVLKSGS-----EESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
+++.|++++|+.+|...+ ...+..++++|.+++.+......+. ..++++.|+.+|.++++.++..|+++|.+|+
T Consensus 200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 999999999999998654 4578889999999998876554444 4789999999999999999999999999999
Q ss_pred cChhh-HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 374 LIQSN-RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 374 ~~~~n-~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
....+ ...+++.|+++.|+++|.+.+ ....++.+|.||+.. ++.+..+.+.|+++.|+.+|.+ .++.++..|+
T Consensus 280 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~~a~ 356 (529)
T 3tpo_A 280 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEAT 356 (529)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHH
T ss_pred hhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHHHHH
Confidence 86655 455668999999999998765 566699999999875 4678889999999999999988 7899999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
++|.+|+.++......+.+.|+++.|+.++.+++..+++.|+++|.+|...
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999888888889999999999999999999999999999999865
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=8.3e-26 Score=252.58 Aligned_cols=289 Identities=19% Similarity=0.194 Sum_probs=242.0
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----
Q 009320 223 EEELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK---- 295 (537)
Q Consensus 223 ~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~---- 295 (537)
++.++++|.++ +.+++..|++.|..|+.. ++.|..+. +.|++|.|+.+|.+++..++..|+++|.||+.+.+
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 46688888776 889999999999999975 55555555 68999999999999999999999999999998431
Q ss_pred --------------------------cH---HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCc
Q 009320 296 --------------------------NK---VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGA 346 (537)
Q Consensus 296 --------------------------~k---~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~ 346 (537)
++ ..+++.|++++|+.+|.++++++++.|+++|.+|+.+.+++..+.+.|+
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 22 5778999999999999999999999999999999998899999999999
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH---HhcCcHHHHHHHhcCC-ch--HHHHHHHHHHHhcCh-hhHH
Q 009320 347 LQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL---VKLNAVATLLTMVKSG-ES--TSRVLLILCNLAASN-EGRS 419 (537)
Q Consensus 347 l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i---v~~g~v~~Lv~lL~~~-~~--~~~al~~L~nLa~~~-~~r~ 419 (537)
+++|+.+|.++++..++.|+++|.||+...+....+ ...|++++|+++|..+ .. ...|+.+|.||+..+ +.+.
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999998754332211 1246999999999754 32 345999999999975 7899
Q ss_pred HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 420 AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.+++.|+++.|+.+|.+ .+..+++.|+++|.+|+.+++...+.+...|+++.|+.++.+.+..+|+.|+++|.+|+.
T Consensus 618 ~Ii~aG~l~~Lv~LL~s---~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 618 RIIKEQGVSKIEYYLME---DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHTTHHHHHHHHHHS---CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999998 788899999999999999776544444337899999999999999999999999999998
Q ss_pred CCCCCcchhhhhhhh-cCCcc
Q 009320 500 REDDDEDVDWEGVLD-SGGLT 519 (537)
Q Consensus 500 ~~~e~~~~d~~~v~~-~g~~~ 519 (537)
..++ .-+.|++ .|++.
T Consensus 695 ~s~~----~~~~ii~~~g~I~ 711 (810)
T 3now_A 695 VSVK----CCEKILAIASWLD 711 (810)
T ss_dssp HCHH----HHHHHHTSTTHHH
T ss_pred CCHH----HHHHHHHHcCCHH
Confidence 5222 2345555 55543
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=3.2e-24 Score=208.33 Aligned_cols=239 Identities=26% Similarity=0.289 Sum_probs=220.1
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC-cchhhH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMA 340 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~ 340 (537)
|.++.|+.+|.+++++++..|+.+|.+++... +++..+++.|+++.|+.+|.+++.+++..|+.+|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999865 5889999999999999999999999999999999999988 778888
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh-cChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-h
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLT-LIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-E 416 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~ 416 (537)
+.+.|+++.|+.+|.++++.++..|+++|.+|+ ..++++..+++.|+++.|+++|.+.+ .+..++.+|.+|+... +
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 57889999999999999999998665 5677999999999854 5
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.+..+.+.|+++.|+++|.+ .++.++..|+++|.+|+.+++.....+.+.|+++.|++++.++++.+++.|.++|.+
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 66888899999999999987 789999999999999999887888888899999999999999999999999999999
Q ss_pred hhcCCCCC
Q 009320 497 LKGREDDD 504 (537)
Q Consensus 497 L~~~~~e~ 504 (537)
|....+..
T Consensus 239 l~~~~~~~ 246 (252)
T 4hxt_A 239 IKSGGWLE 246 (252)
T ss_dssp HHHTCBCC
T ss_pred HHcCCCcc
Confidence 99876553
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=2.1e-24 Score=234.53 Aligned_cols=291 Identities=17% Similarity=0.176 Sum_probs=248.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-CccH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE-KKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~-~~~k 297 (537)
..++.+++.|.|++++.+..|+..++.+ +++.......+.+.|+||.|+.+|. ++++.++..|+++|.|++.+ ++++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4578999999999999999999999876 4444445677889999999999996 45689999999999999985 4677
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhccCC-----HHHHHHHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAES-----ERTRHDSALALYH 371 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~~~~-----~~~~~~A~~aL~n 371 (537)
..+++.|+|+.|+.+|.+++.++++.|+++|.+|+.+ ++++..+.+.|+++.|+.+|...+ ....+.++++|.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999976 568888999999999999998653 4577899999999
Q ss_pred hhcChhhHHHHH-hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHH
Q 009320 372 LTLIQSNRVKLV-KLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 372 Ls~~~~n~~~iv-~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
++........+. ..|+++.|+.+|.+.+ ....++++|.+|+..+ +....+.+.|+++.|+++|.+ .+..++..
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~ 312 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTP 312 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC---CChhHHHH
Confidence 998765544443 4789999999998655 5666999999999876 456667889999999999988 78999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 448 CVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 448 A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
|+.+|.+|+.+++.....+.+.|+++.|+.++.+.++.+++.|+++|.+|+...++ ....|++.|.+
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~----~~~~v~~~g~i 379 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD----QIQQVVNHGLV 379 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH----HHHHHHHTTHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH----HHHHHHhcCcH
Confidence 99999999998888888889999999999999999999999999999999976332 23455555544
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=6.6e-24 Score=230.00 Aligned_cols=291 Identities=17% Similarity=0.192 Sum_probs=251.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHccCC-HHHHHHHHHHHHHhcCC-CccH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVSRY-SIVQTNAVASLVNLSLE-KKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s~~-~~v~~~a~~~L~nLs~~-~~~k 297 (537)
..++.|++.|.+++++.+..|+..|+++..... .....+.+.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 457899999999999999999999999965443 56777889999999999999876 99999999999999985 6788
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHh-ccCCHHHHHHHHHHHHHhhcC
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHAL-RAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~ 375 (537)
..+++.|+++.|+.+|.+++.++++.|+++|.+|+... .++..+...|+++.|+.+| .+.++.++..++++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999764 5788888899999999999 556889999999999999987
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhh-HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEG-RSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~-r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
..+.......|+++.|+.+|.+.+ ....++.+|.+|+...+. ...+.+.|+++.|+.+|.. .++.+++.|+++|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~---~~~~v~~~a~~~L 310 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH---PSPSVLIPALRTV 310 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC---CChhHHHHHHHHH
Confidence 655555667899999999998655 567799999999987654 4677889999999999988 7899999999999
Q ss_pred HHhhcCChHHHHHHHHCCcHHHHHHHHHhC-CHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 453 FALGHGNLRFKGLAKEARAAEVLREVEERG-SQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 453 ~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
.+|+.+.....+.+.+.|+++.|+.++.++ ++.+++.|+++|.+|....++ ....+++.|.+
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~----~~~~~~~~~~i 373 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD----QIQAVINAGII 373 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH----HHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH----HHHHHHHCCCH
Confidence 999998877788888999999999999998 999999999999999975221 23455555554
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=5.7e-24 Score=206.57 Aligned_cols=235 Identities=26% Similarity=0.298 Sum_probs=216.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
.++.|++.|.+++++.+..|++.|.+++..++.++..+.+.|+++.|+.+|.+++.+++..++.+|.+++.+ ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 467899999999999999999999999998888999999999999999999999999999999999999996 7889999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcc-cCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLA-LEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n 378 (537)
.+.|+++.|+.+|.+++.+++..|+.+|.+|+ ..++++..+.+.|+++.|+++|.++++.++..++++|.+|+. .+.+
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 566788888899999999999999999999999999999998 4556
Q ss_pred HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009320 379 RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L 455 (537)
+..+++.|+++.|+++|.+++ .+..++.+|.+|+. .++.+..+.+.|+++.|++++.+ .++.+++.|+++|.+|
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHHHHHHHH
Confidence 688889999999999998654 56779999999998 55778889999999999999988 7899999999999999
Q ss_pred hcCC
Q 009320 456 GHGN 459 (537)
Q Consensus 456 ~~~~ 459 (537)
+...
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 9854
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=1.7e-23 Score=226.79 Aligned_cols=276 Identities=16% Similarity=0.141 Sum_probs=248.1
Q ss_pred hHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLRSAD-IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.|+++|.+.+ +..+..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 3688999998776 99999999999999998899999999999999999999999999999999999999985 467888
Q ss_pred HHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh
Q 009320 300 IVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 300 i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 378 (537)
+.+.|++++|+.+| ...+..++..|+++|.+|+............++++.|+.+|.+.++.++..|+++|.+|+.....
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 277 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND 277 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 88999999999999 56789999999999999998865555555689999999999999999999999999999987655
Q ss_pred H-HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCC-CHHHHHHHHHHHH
Q 009320 379 R-VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSD-SEATRENCVAALF 453 (537)
Q Consensus 379 ~-~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~-~~~~~e~A~~~L~ 453 (537)
+ ..+++.|+++.|+.+|.+.+ .+..|+.+|.+|+.. +..+..+.+.|+++.|+.+|.. . +..++..|+++|.
T Consensus 278 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ---NLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC---CCcHHHHHHHHHHHH
Confidence 4 56778999999999998665 567799999999984 4677888899999999999997 6 8999999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+|+.++......+.+.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99998777777778899999999999999999999999999999876
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=4.1e-24 Score=208.55 Aligned_cols=232 Identities=21% Similarity=0.268 Sum_probs=211.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
.+.+++.|.+++++.+..|++.|+++...+...+..+.+.|+++.|+.+|.+++++++..|+.+|.+++. +++++..++
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5789999999999999999999977655567788889999999999999999999999999999999998 578899999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh-hHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK-MAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNR 379 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~ 379 (537)
+.|+++.|+.+|.+++++++..|+++|.+|+..++++ ..+.+.|+++.|+.+|.++++.++..|+++|.+|+. .++++
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999999999999999999999988 778889999999999999999999999999999997 45677
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..+++.|+++.|+++|.+++ .+..++.+|.+|+. .++.+..+.+.|+++.|++++.+ +++.+++.|+++|.+|+
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHHHHHHHHHHHh
Confidence 88889999999999998665 56779999999995 55788889999999999999988 78899999999999998
Q ss_pred c
Q 009320 457 H 457 (537)
Q Consensus 457 ~ 457 (537)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 5
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=3.3e-23 Score=223.57 Aligned_cols=296 Identities=22% Similarity=0.237 Sum_probs=248.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
++.|++.|+++++..+..|+..|.+++..+ .++..+. ..|+++.|+++|.++ +++++..++.+|.+|+.+++++..+
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 678999999999999999999999999754 4555555 458999999999754 8999999999999999988899999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n 378 (537)
.+.|+++.|+.+|.+++++++..|+.+|.+|+..+ ..+..+.+.|+++.|+++|.+++.+.+..++.+|.+|+. ++++
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999874 567777789999999999999999999999999999997 5789
Q ss_pred HHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc------------------
Q 009320 379 RVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES------------------ 437 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~------------------ 437 (537)
+..+++.|+++.|+++|.+++ ....++.+|.+|+.+++++..+.+.|+++.|++++...
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999997543 34458899999999999999988888777776655431
Q ss_pred ------------------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh--CCHHHHHHHHHHHHHh
Q 009320 438 ------------------GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER--GSQRAKEKAKRILEML 497 (537)
Q Consensus 438 ------------------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~--~s~~~k~~A~~lL~~L 497 (537)
...++.+++.|+++|.+|+.++...+..+.+.|+++.|++++.+ .++.+++.|..+|.+|
T Consensus 258 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp CTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 12567888888999999988777778888899999999999875 3489999999999999
Q ss_pred hcCCCCCcchhhhhhhhcCCccc
Q 009320 498 KGREDDDEDVDWEGVLDSGGLTR 520 (537)
Q Consensus 498 ~~~~~e~~~~d~~~v~~~g~~~~ 520 (537)
....++.+. -...+++.|++..
T Consensus 338 ~~~~~~~~~-~~~~i~~~~~i~~ 359 (529)
T 1jdh_A 338 TSRHQEAEM-AQNAVRLHYGLPV 359 (529)
T ss_dssp TSSSTTHHH-HHHHHHHTTCHHH
T ss_pred HcCCchHHH-HHHHHHHcCChhH
Confidence 876444211 1246667776543
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=6e-23 Score=222.75 Aligned_cols=292 Identities=18% Similarity=0.205 Sum_probs=251.8
Q ss_pred ChhHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCC-Ccc
Q 009320 220 APEEEELSKKLRSADIALQEEGVIALRRLTRT-NEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLE-KKN 296 (537)
Q Consensus 220 ~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~-~~~ 296 (537)
...++.|++.|.+++++.+..|+..|+++... ....+..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.. +++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35578999999999999999999999998643 234556778899999999999987 899999999999999985 467
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
+..+++.|+++.|+.+|.+++.++++.|+++|.+|+... .++..+...|+++.|+.+|.+.++.++..|+++|.+|+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 788889999999999999999999999999999999774 6788888899999999999998999999999999999976
Q ss_pred h-hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 376 Q-SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 376 ~-~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
. .+.......|+++.|+.+|.+.+ ....++.+|.+|+.. ++.+..+.+.|+++.|+.+|.. .+..+++.|+.+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC---CChhhHHHHHHH
Confidence 5 55556667899999999998655 566699999999975 4677888889999999999987 789999999999
Q ss_pred HHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 452 LFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 452 L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
|.+|+.+.+...+.+.+.|+++.|+.++.++++.+++.|.++|.+|....++ ..+.+++.|.+
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~----~~~~~~~~~~l 385 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE----QIQAVIDANLI 385 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHHCCCH
Confidence 9999998877777788899999999999999999999999999999975322 23445555544
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=1.1e-23 Score=205.41 Aligned_cols=234 Identities=23% Similarity=0.290 Sum_probs=213.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMA 340 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~ 340 (537)
...+.++.+|.+++++++..|+.+|.++.. +++++..+++.|+++.|+.+|.+++++++..|+.+|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 458899999999999999999999976544 66788889999999999999999999999999999999997 5678888
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhH-HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hh
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNR-VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NE 416 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~ 416 (537)
+.+.|+++.|+.+|+++++.++..|+++|.||+...+++ ..+++.|+++.|+++|.+++ .+..++.+|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 88899999999999998765 567799999999985 46
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.+..+.+.|+++.|+++|.. .++.+++.|+++|.+|+.+++..+..+.+.|+++.|+.++.++++.+++.|..+|.+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77888899999999999998 789999999999999998887888888899999999999999999999999999999
Q ss_pred hhc
Q 009320 497 LKG 499 (537)
Q Consensus 497 L~~ 499 (537)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 874
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1.9e-22 Score=218.83 Aligned_cols=276 Identities=14% Similarity=0.114 Sum_probs=247.1
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLRSA-DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.|++.|.+. ++.++..|++.|.+++..++..+..+...|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 368899999886 899999999999999988888899999999999999999999999999999999999986 567888
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QS 377 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~ 377 (537)
+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.+.++.++..|+++|.+|+.. ++
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~ 290 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 290 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH
Confidence 889999999999999999999999999999999775 4445555689999999999999999999999999999975 45
Q ss_pred hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 378 NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
....+++.|+++.|+.+|.+.+ .+..|+.+|.+|+.. ++....+.+.|+++.|+.+|.. .+..++..|+++|.+
T Consensus 291 ~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 6777888999999999998665 566799999999975 4667778889999999999988 689999999999999
Q ss_pred hhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 455 LGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 455 L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
|+.++....+.+.+.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9987766666677899999999999999999999999999999864
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=8.8e-23 Score=226.87 Aligned_cols=295 Identities=22% Similarity=0.241 Sum_probs=248.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
++.|++.|+++++.++..|+..|.+++.... ++..+. ..|+++.|+++|.+. +++++..|+.+|.+|+.+++++..+
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 6789999999999999999999999998764 555555 458999999999864 8999999999999999988899999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n 378 (537)
.+.|+++.|+.+|.+++++++..|+.+|.+|+... ..+..+.+.|+++.|+++|.+++++.+..++.+|.+|+. ++++
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999774 566677789999999999999998888889999999996 7889
Q ss_pred HHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc------------------
Q 009320 379 RVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES------------------ 437 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~------------------ 437 (537)
+..+++.|+++.|+++|.+.. ....++.+|.+|+.+++++..+++.|+++.|++++...
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999998654 34568999999999999999999888877776655430
Q ss_pred ------------------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC-C-HHHHHHHHHHHHHh
Q 009320 438 ------------------GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG-S-QRAKEKAKRILEML 497 (537)
Q Consensus 438 ------------------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~-s-~~~k~~A~~lL~~L 497 (537)
...+..+++.|+++|.+|+.++...+..+.+.|+++.|+.++.+. + +.+++.|..+|.+|
T Consensus 255 ~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp CTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 115677888888888888887777788888999999999998763 3 89999999999999
Q ss_pred hcCCCCCcchhhhhhhhcCCcc
Q 009320 498 KGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 498 ~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
....++++. -...|++.|++.
T Consensus 335 ~~~~~~~~~-~q~~v~~~~~l~ 355 (644)
T 2z6h_A 335 TSRHQEAEM-AQNAVRLHYGLP 355 (644)
T ss_dssp TSSSTTHHH-HHHHHHHTTHHH
T ss_pred hcCCchHHH-HHHHHHHccChH
Confidence 876444221 112355666543
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=4.7e-22 Score=209.88 Aligned_cols=274 Identities=16% Similarity=0.167 Sum_probs=242.3
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHH
Q 009320 223 EEELSKKLRSA-DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~k~~i 300 (537)
++.|++.|+++ ++..+..|++.|.+++..+++....+.+.|+++.|+.+|.++++.++..|+.+|.+++.+. .++..+
T Consensus 66 i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~ 145 (450)
T 2jdq_A 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYV 145 (450)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 57899999887 8999999999999999887888888889999999999999999999999999999999864 678888
Q ss_pred HhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCc--chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-h
Q 009320 301 VRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALED--ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-Q 376 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~ 376 (537)
++.|+++.|+.+|.+ .+.+++..|+++|.+|+... ..+..+ ..++++.|+.+|.++++.++..++++|.+|+.. +
T Consensus 146 ~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 224 (450)
T 2jdq_A 146 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224 (450)
T ss_dssp HHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH
T ss_pred HHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc
Confidence 899999999999995 68999999999999999764 233333 378999999999999999999999999999985 5
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 377 SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 377 ~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
+++..+++.|+++.|+.+|.+.+ .+..++.+|.+|+... +.+..+.+.|+++.|+++|.+ .++.++..|+++|.
T Consensus 225 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 225 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWTIS 301 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 67778888999999999998655 5677999999999865 456667888999999999987 68999999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+|+.+.....+.+.+.|+++.|+.++.++++++++.|+++|.++...
T Consensus 302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99988777777777889999999999999999999999999999864
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=5e-22 Score=214.30 Aligned_cols=289 Identities=18% Similarity=0.186 Sum_probs=243.6
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 223 EEELSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
++.|++.|.+ .+++.+..|+..|++++.. ++++..+.+.|+++.|+.+|.++++.++..|+.+|.+|+.+ +.++..+
T Consensus 61 i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 139 (529)
T 1jdh_A 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 5789999965 4899999999999999975 56899999999999999999999999999999999999985 5678888
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhccCC-HHHHHHHHHHHHHhhcChhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAES-ERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~n 378 (537)
.+.|+++.|+.+|.+++.+++..++.+|.+++.. ++++..+.+.|+++.|+.+|++++ ...+..++.+|.+|+..+++
T Consensus 140 ~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc
Confidence 8999999999999999999999999999999975 678888888999999999999875 45667788899999999999
Q ss_pred HHHHHhcCcHHHHHHHhcCCc-----------------------------------------hHHHHHHHHHHHhcC-hh
Q 009320 379 RVKLVKLNAVATLLTMVKSGE-----------------------------------------STSRVLLILCNLAAS-NE 416 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~-----------------------------------------~~~~al~~L~nLa~~-~~ 416 (537)
+..+++.|+++.|++++.+++ .+..++.+|.+|+.. ++
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 999999999888887765321 344578888888775 46
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh---HHHHHHHHCCcHHHHHHHHHhCC-HHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL---RFKGLAKEARAAEVLREVEERGS-QRAKEKAKR 492 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~---~~~~~i~~~g~i~~L~~ll~~~s-~~~k~~A~~ 492 (537)
++..+.+.|+++.|+++|... ..++.+++.|+.+|.+|+.++. ..+..+.+.|+++.|+.++.+.+ +.+++.|.+
T Consensus 300 ~~~~~~~~~~v~~L~~ll~~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~ 378 (529)
T 1jdh_A 300 NKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcc-CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHH
Confidence 888999999999999999762 1347999999999999998642 25667788999999999988876 699999999
Q ss_pred HHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 493 ILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 493 lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
+|.++...... .+.+++.|.+
T Consensus 379 ~l~nl~~~~~~-----~~~~~~~~~i 399 (529)
T 1jdh_A 379 LIRNLALCPAN-----HAPLREQGAI 399 (529)
T ss_dssp HHHHHTTSGGG-----HHHHHHTTHH
T ss_pred HHHHHhcChhh-----hHHHHHcCCH
Confidence 99999975221 2455565554
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=9.5e-23 Score=196.60 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=172.0
Q ss_pred hHHHHHHHhcCCCH--HHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHH
Q 009320 222 EEEELSKKLRSADI--ALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKV 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~--~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~ 298 (537)
.++.+|++|+++++ +.|..|+..|++++..++.+|..+.+.|+||.|+.+|.++++++|+.|+++|.||+. +++||.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46889999998887 889999999999999999999999999999999999999999999999999999998 578999
Q ss_pred HHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc---c-------------CCHHH
Q 009320 299 LIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR---A-------------ESERT 361 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~---~-------------~~~~~ 361 (537)
.|++.|+|++|+++|. .++.+++++|+.+|++|+..+.+|..|.+. +++.|+.++. + .++.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999999874 6999998763 1 25689
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhc-CcHHHHHHHhcC--------CchHHHHHHHHHHHhcC
Q 009320 362 RHDSALALYHLTL-IQSNRVKLVKL-NAVATLLTMVKS--------GESTSRVLLILCNLAAS 414 (537)
Q Consensus 362 ~~~A~~aL~nLs~-~~~n~~~iv~~-g~v~~Lv~lL~~--------~~~~~~al~~L~nLa~~ 414 (537)
+.+|..+|+||+. .+++|..|.+. |+|+.|+.+++. ...++.|+.+|.|||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999998 46899999985 789999999963 23578899999999864
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=9.2e-22 Score=218.64 Aligned_cols=290 Identities=18% Similarity=0.198 Sum_probs=244.9
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 223 EEELSKKLRSA-DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
++.|++.|.++ +.+.+..|+..|++|+.. .+++..+.+.|+++.|+.+|.++++.++..|+.+|.||+.+ +..+..+
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 57899999764 899999999999999976 56899999999999999999999999999999999999985 5677788
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhHHhhcCchHHHHHHhccCC-HHHHHHHHHHHHHhhcChhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAES-ERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~n 378 (537)
.+.|+++.|+.+|.+++.+++..++.+|.+|+. +++++..+.+.|+++.|+.+|++.+ ...+..++.+|.+|+..+++
T Consensus 137 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~ 216 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216 (644)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTH
T ss_pred HHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCccc
Confidence 899999999999999999999999999999996 6778999999999999999999874 66788999999999999999
Q ss_pred HHHHHhcCcHHHHHHHhcCC---------------------------------------c--hHHHHHHHHHHHhcCh-h
Q 009320 379 RVKLVKLNAVATLLTMVKSG---------------------------------------E--STSRVLLILCNLAASN-E 416 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~---------------------------------------~--~~~~al~~L~nLa~~~-~ 416 (537)
+..+++.|+++.|+.++.+. + .++.++.+|.+|+... +
T Consensus 217 ~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~ 296 (644)
T 2z6h_A 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 296 (644)
T ss_dssp HHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999888766432 1 3445778888887754 6
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh---HHHHHHHHCCcHHHHHHHHHhCC-HHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL---RFKGLAKEARAAEVLREVEERGS-QRAKEKAKR 492 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~---~~~~~i~~~g~i~~L~~ll~~~s-~~~k~~A~~ 492 (537)
++..+.+.|+++.|+++|... ...+.+++.|+.+|.+|+.... ..+..+.+.|+++.|++++.+.+ +.+++.|++
T Consensus 297 ~~~~v~~~g~v~~Lv~lL~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~ 375 (644)
T 2z6h_A 297 NKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence 788889999999999999862 1237999999999999997532 34555778999999999988775 799999999
Q ss_pred HHHHhhcCCCCCcchhhhhhhhcCCcc
Q 009320 493 ILEMLKGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 493 lL~~L~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
+|.+|...... .+.+++.|++.
T Consensus 376 ~L~nLa~~~~~-----~~~i~~~~~i~ 397 (644)
T 2z6h_A 376 LIRNLALCPAN-----HAPLREQGAIP 397 (644)
T ss_dssp HHHHHTTSGGG-----HHHHHHTTHHH
T ss_pred HHHHHccCHHH-----HHHHHHcCCHH
Confidence 99999875322 25566666554
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=2.7e-21 Score=204.05 Aligned_cols=275 Identities=19% Similarity=0.127 Sum_probs=240.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCC--ccHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEK--KNKV 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~--~~k~ 298 (537)
.++.|++.|+++++..+..|++.|.+++..++..+..+.+.|+++.|+.++.+ .+..++..++.+|.+++.+. ..+.
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 187 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 46889999999999999999999999999888899999999999999999985 78999999999999999753 3333
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 377 (537)
.++ .++++.|+.+|.+++.+++..++++|.+|+... +.+..+...|+++.|+.+|.+.++.++..|+++|.+|+...+
T Consensus 188 ~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 188 AKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD 266 (450)
T ss_dssp GGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh
Confidence 333 789999999999999999999999999999864 456667788999999999999899999999999999998654
Q ss_pred -hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 378 -NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 378 -n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
....+++.|+++.|+++|.+.+ .+..++.+|.+|+. .++....+.+.++++.|+++|.+ .++.++..|+++|.
T Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 267 IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---AEFRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHH
Confidence 4566778999999999998764 56679999999996 55777888889999999999998 78999999999999
Q ss_pred HhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+++.+ ++...+.+.+.|+++.|+.++.+.++++++.|..+|.++...
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99985 555556566889999999999999999999999999888764
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=3.6e-21 Score=218.25 Aligned_cols=296 Identities=23% Similarity=0.257 Sum_probs=245.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
.++.|++.|.+.+..+++.|+..|.+|+... .++..+.. .|+++.|+.+|.++ +++++..|+.+|.+|+.+++++..
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 4688999999999999999999999999754 45556654 58999999999754 899999999999999998888999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQS 377 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~ 377 (537)
+.+.|+++.|+.+|.+++..++..|+.+|.+|+... ..+..+.+.|+++.|+.+|.+.+..++..++.+|.+|+. +++
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 999999999999999999999999999999999874 566667789999999999999888999999999999986 578
Q ss_pred hHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc-----------------
Q 009320 378 NRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES----------------- 437 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~----------------- 437 (537)
++..+++.|+++.|+.+|.+++ ..+.++.+|.+|+.+++++..+++.|+++.|+.+|...
T Consensus 310 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 9999999999999999998654 34458999999999888888888777776666554330
Q ss_pred -------------------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh-CC-HHHHHHHHHHHHH
Q 009320 438 -------------------GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER-GS-QRAKEKAKRILEM 496 (537)
Q Consensus 438 -------------------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~s-~~~k~~A~~lL~~ 496 (537)
...+..+++.|+++|.+|+.++...+..+.+.|+++.|+.++.+ ++ +.+++.|..+|.+
T Consensus 390 ~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~n 469 (780)
T 2z6g_A 390 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469 (780)
T ss_dssp TCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 11567888889999999988877778888889999999999875 33 5999999999999
Q ss_pred hhcCCCCCcchhhhhhhhcCCcc
Q 009320 497 LKGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 497 L~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
|+...++.+. ....|++.|++.
T Consensus 470 L~~~~~~~~~-~~~~v~~~~~l~ 491 (780)
T 2z6g_A 470 LTSRHQDAEM-AQNAVRLHYGLP 491 (780)
T ss_dssp TTSSSTTHHH-HHHHHHHTTCHH
T ss_pred HHhcCchHHH-HHHHHHHcCCHH
Confidence 9865443211 123555666544
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=195.32 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=171.1
Q ss_pred hHHHHHHHHccCCH--HHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-Ccchhh
Q 009320 264 LLSALRNLVVSRYS--IVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKM 339 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~--~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~ 339 (537)
.+|.|+.+|.++++ +++..|+..|.+|+. +++++..+.+.|+||+||.+|.+++.++++.|+++|.+|+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 48999999999887 899999999999997 67899999999999999999999999999999999999998 578999
Q ss_pred HHhhcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc------------------CCch
Q 009320 340 AIGVLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK------------------SGES 400 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~------------------~~~~ 400 (537)
.|.+.|+++.|+++|++ ++..+++.|+.+|+||+..++++..+++. ++++|++++. +..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 99999999999999985 68999999999999999999999999874 7999998652 1135
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhC-CcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcC
Q 009320 401 TSRVLLILCNLAA-SNEGRSAILDA-NGVSILVGMLRES---GSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 401 ~~~al~~L~nLa~-~~~~r~~i~~~-g~I~~Lv~lL~~~---~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.+.|..+|.||+. ++++|..|.+. |.|+.|+.+++.. ...+...+|+|+.+|++||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6779999999987 56999999986 5589999999862 123668899999999999974
No 32
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.87 E-value=3.5e-23 Score=167.99 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=69.4
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
..+|++|.||||+++|+|||+++|||||||.||++|+.. +.+||+|++++...+|+||+.|+++|+.|+.+|+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999999999999999986 56899999999999999999999999999998763
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=6.1e-21 Score=216.39 Aligned_cols=274 Identities=20% Similarity=0.189 Sum_probs=238.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
++.|+..|.+.+...+..|++.|.+++..... .....++++.|+.+|.+.+.+++..|+.+|.+|+.. ++++..+.
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46778888888899999999999999976532 223457899999999999999999999999999985 46788888
Q ss_pred hcCCHHHHHHHHcc-CC-HHHHHHHHHHHHHcccCcc----hhhHHhhcCchHHHHHHhccCC-HHHHHHHHHHHHHhhc
Q 009320 302 RSGFVPLLIDVLKS-GS-EESQEHAAGALFSLALEDE----NKMAIGVLGALQPLMHALRAES-ERTRHDSALALYHLTL 374 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~-~~-~e~~~~Aa~~L~~Ls~~~~----~k~~I~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~nLs~ 374 (537)
+.|+++.|+.+|.. ++ .+++..|+.+|.+|+.... .+..+...++++.|+++|.+.+ ..+++.|+++|.||+.
T Consensus 439 ~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 99999999999976 33 5899999999999987543 2557778899999999999876 4899999999999999
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCCc------------------------hHHHHHHHHHHHhcChhhHHHHHhCCcHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSGE------------------------STSRVLLILCNLAASNEGRSAILDANGVSIL 430 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~~------------------------~~~~al~~L~nLa~~~~~r~~i~~~g~I~~L 430 (537)
.++++..+++.|+++.|+++|.+++ +.+.++.+|.+|+..++++..+.+.|+++.|
T Consensus 519 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 598 (780)
T 2z6g_A 519 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598 (780)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHH
Confidence 9999999999999999999986421 3456899999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 431 VGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 431 v~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
+++|.+ .++.++..|+.+|.+|+.. ...+..+.+.|+++.|+.++.+.++.+++.|..+|..|....+.
T Consensus 599 v~lL~~---~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 599 VQLLYS---PIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHGGGC---SCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHcC---CCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 999998 7899999999999999864 45788889999999999999999999999999999999987653
No 34
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.87 E-value=9.5e-23 Score=169.67 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=72.5
Q ss_pred CCCCCCccccccccccccCCeecCCC-ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTG-QTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHP 100 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~~ 100 (537)
..++|++|.||||+++|+|||+++|| |||||.||++||.. +.+||+|++++...+|+||+.|+++|+.|+.+|++..-
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~~ 94 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQSG 94 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCSC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhhc
Confidence 45789999999999999999999999 99999999999986 56899999999999999999999999999999987554
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.87 E-value=6.8e-23 Score=171.20 Aligned_cols=75 Identities=25% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
..++|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++...+|+||+.|+++|+.|+.+|+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999999999999985 56899999999999999999999999999998874
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.86 E-value=2e-22 Score=184.55 Aligned_cols=79 Identities=24% Similarity=0.266 Sum_probs=73.4
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEH 99 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~ 99 (537)
...++|++|+||||+++|+|||+++|||||||.||++|+..++.+||+|++++...+|+||+.|+++|+.|+..||++.
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 3578899999999999999999999999999999999998754479999999999899999999999999999999853
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=3.3e-20 Score=175.74 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
.+.|+.+|.+++++.+..|++.|.+++..++..+..+.+.|+++.|+.+|.++++.++..|+.+|.|++. +++++..+.
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4678999999999999999999999998889999999999999999999999999999999999999996 567889999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hhhH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNR 379 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~ 379 (537)
+.|+++.|+.+|.++++.++..|+++|.+|+... +.+..+.+.|+++.|+++|.++++.++..|+++|.||+.. ++++
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999999999999999654 4556677899999999999999999999999999999986 7888
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
..+++.|+++.|++++.+++ .++.|+.+|.+|+.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999998654 67779999999985
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.6e-20 Score=204.87 Aligned_cols=277 Identities=13% Similarity=0.084 Sum_probs=225.3
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhhccCh--------------------------------------HHHHHhhcCC
Q 009320 223 EEELSKKLRS-ADIALQEEGVIALRRLTRTNE--------------------------------------ELRVSICTPN 263 (537)
Q Consensus 223 ~~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~--------------------------------------~~r~~i~~~g 263 (537)
++.|++.|++ .+....-.++..|.|++...+ .++..+.+.|
T Consensus 378 L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaG 457 (778)
T 3opb_A 378 TEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTE 457 (778)
T ss_dssp HHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCc
Confidence 4667777763 566667777777777765322 1567788999
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHH---HHHHHHHHHHHcccCcchhhH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEE---SQEHAAGALFSLALEDENKMA 340 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~~~~k~~ 340 (537)
++|.|+.++.+.++.+++.++++|.||+.++++|..+++.|++++|+.+|.+++.. .++.|+.+|.+|+...+.+..
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999988654 899999999999977666555
Q ss_pred Hhh---cCchHHHHHHhcc--CCH------------HHHHHHHHHHHHhhcCh-----hhHHHHHhc-CcHHHHHHHhcC
Q 009320 341 IGV---LGALQPLMHALRA--ESE------------RTRHDSALALYHLTLIQ-----SNRVKLVKL-NAVATLLTMVKS 397 (537)
Q Consensus 341 I~~---~g~l~~Lv~lL~~--~~~------------~~~~~A~~aL~nLs~~~-----~n~~~iv~~-g~v~~Lv~lL~~ 397 (537)
+.. .|++++|+.+|.. +.. ..+..|+.||.||+..+ +.|..+++. |+++.|.++|.+
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 531 4899999999983 211 23779999999999976 348889985 999999999986
Q ss_pred Cc--hHHHHHHHHHHHhcChhhH-HHHHhCC------cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 398 GE--STSRVLLILCNLAASNEGR-SAILDAN------GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 398 ~~--~~~~al~~L~nLa~~~~~r-~~i~~~g------~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
++ ++..|+.+|+||+.+++++ ..+.+.+ .++.|+.++.. ++.+++..|.++|.+++...+...+.+.+
T Consensus 618 ~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s---~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL---SDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 54 5666999999999999886 3554322 37899999987 89999999999999998766555555555
Q ss_pred C-CcHHHHHHHHHh--CCHHHHHHHHHHHHHhhcCCC
Q 009320 469 A-RAAEVLREVEER--GSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 469 ~-g~i~~L~~ll~~--~s~~~k~~A~~lL~~L~~~~~ 502 (537)
. ++++.|+.++.+ .++.++..+..++.+|....+
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 5 899999999998 899999999999999997543
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=4.8e-20 Score=174.64 Aligned_cols=195 Identities=24% Similarity=0.311 Sum_probs=176.3
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNR 379 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~ 379 (537)
..+..+.|+.+|.+++.+++..|+.+|.+|+. .++++..+.+.|+++.|+.+|.++++.++..|+++|.||+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35788999999999999999999999999994 55678888899999999999999999999999999999995 67889
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..+++.|+++.|+.+|.+++ .+..++.+|.||+. .++.+..+.+.|+++.|+++|.+ .+..+++.|+++|.+|+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Confidence 99999999999999998765 56779999999996 45677788899999999999988 78999999999999999
Q ss_pred cCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 457 HGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 457 ~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
..++..+..+.+.|+++.|+.++.++++.++++|..+|.+|+.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9877888888999999999999999999999999999999875
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.83 E-value=5.1e-21 Score=152.92 Aligned_cols=76 Identities=36% Similarity=0.599 Sum_probs=72.0
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
+.++|++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|++++...++.||+.|+++|++|..+|++
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999999999988777899999999988999999999999999999986
No 41
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.7e-19 Score=192.78 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=221.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCc-----
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKK----- 295 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~----- 295 (537)
.+.+++.|.+.+.+.+..|++.|..++. +++.|..+.+ .|++..|+.++.. .+..+...++.+|.||+.+.+
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e 414 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence 4667778877777789999999999996 4677777764 6669999999985 677889999999999986321
Q ss_pred ----------------------------------cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHH
Q 009320 296 ----------------------------------NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 296 ----------------------------------~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
++..+.+.|++++|+.++.++++.+++.|+++|.+|+.+.++|..+
T Consensus 415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~l 494 (778)
T 3opb_A 415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQL 494 (778)
T ss_dssp CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455667899999999999999999999999999999999999999
Q ss_pred hhcCchHHHHHHhccCCHH---HHHHHHHHHHHhhcChhhHHHHH--h-cCcHHHHHHHhcC-Cch--------------
Q 009320 342 GVLGALQPLMHALRAESER---TRHDSALALYHLTLIQSNRVKLV--K-LNAVATLLTMVKS-GES-------------- 400 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv--~-~g~v~~Lv~lL~~-~~~-------------- 400 (537)
.+.|+++.|+.+|.+++.. .+..|+.||.+|....+....+- . .|+|++|+++|.. ...
T Consensus 495 vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 9999999999999998654 89999999999886544333221 1 4999999999972 211
Q ss_pred -HHHHHHHHHHHhcCh-----hhHHHHHhC-CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHH-HHHHH-----
Q 009320 401 -TSRVLLILCNLAASN-----EGRSAILDA-NGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRF-KGLAK----- 467 (537)
Q Consensus 401 -~~~al~~L~nLa~~~-----~~r~~i~~~-g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~-~~~i~----- 467 (537)
...|+.+|.|||..+ +.|..++.+ |+++.|..+|.+ ++..++..|+.++.||+.+.+.. +....
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD---ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 445999999999986 347878885 899999999988 78899999999999999866532 22221
Q ss_pred HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 468 EARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 468 ~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
..+.++.|+.|+..++.++|+.|.++|.++..
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 12247889999999999999999999999964
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.80 E-value=2.6e-20 Score=185.57 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=74.4
Q ss_pred CCCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 009320 20 SNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEH 99 (537)
Q Consensus 20 ~~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~ 99 (537)
....++|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|++++...+++||+.|+++|++||.+|+++.
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999999999999999999998866679999999998899999999999999999999853
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-20 Score=152.31 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCCCccccccccccccCCeecC-CCccccHHHHHHHHHcC-----CCCCCC--CCCC-CCCCCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-----FLPDLE--NGFK-PDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-----~~~cp~--~~~~-~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ...||+ |+.. +...+|+||+.|+++|+.|+.+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3478999999999999999996 99999999999999763 348999 5555 8888999999999999999988
Q ss_pred cCCCC
Q 009320 95 SGVEH 99 (537)
Q Consensus 95 ~~~~~ 99 (537)
++..-
T Consensus 83 ~~r~~ 87 (94)
T 2yu4_A 83 RHRHS 87 (94)
T ss_dssp CCSCC
T ss_pred hcccc
Confidence 87543
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.78 E-value=1.3e-17 Score=167.02 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHH
Q 009320 276 YSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLID-VLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHA 353 (537)
Q Consensus 276 ~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~l 353 (537)
+.+-+..|+..|.++..+.+|+..+...|++++|+. +|.++++++++.|+++|.+++.++ ..+..+.+.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 345678889999999988789999999999999999 999999999999999999999765 577888899999999999
Q ss_pred hccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHH
Q 009320 354 LRAE-SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVS 428 (537)
Q Consensus 354 L~~~-~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~ 428 (537)
|+++ +..+++.|+++|.||+.+ +.+...++++|+++.|+.+|.+++ ++.+|+++|.+|+. .++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9965 788999999999999974 556778888999999999998765 56779999999987 467899999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHC-CcHHHHH----HHHH-hC-CHHHHHHHHHHHHHhhcC
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEA-RAAEVLR----EVEE-RG-SQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~-g~i~~L~----~ll~-~~-s~~~k~~A~~lL~~L~~~ 500 (537)
.|+++|.. .+..+++.|+.+|.+|+.+........... ..+..++ +-++ .. ..+..++|..+|..+-..
T Consensus 213 ~Lv~LL~~---~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 213 QLVALVRT---EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHHTS---CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcC---CChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 99999988 688999999999999999865443333321 1122222 2233 22 578889999999877754
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=1e-16 Score=160.52 Aligned_cols=232 Identities=18% Similarity=0.204 Sum_probs=183.7
Q ss_pred HHHHHHHhcCC------------CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHH
Q 009320 223 EEELSKKLRSA------------DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRN-LVVSRYSIVQTNAVASLVN 289 (537)
Q Consensus 223 ~~~Lv~~L~s~------------~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~v~~~a~~~L~n 289 (537)
.+..+..|.+. +.+.+..|+..|..+.. +.++...+...|++|.|+. +|.++++.++..|+++|.+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46777777653 33678889999999996 4567788899999999999 9999999999999999999
Q ss_pred hcCC-CccHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCHHHHHHHH
Q 009320 290 LSLE-KKNKVLIVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESERTRHDSA 366 (537)
Q Consensus 290 Ls~~-~~~k~~i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~ 366 (537)
++.+ +..+..+++.|++++|+.+|.++ +..++..|+++|.+|+.+.. .+..+.+.|+++.|+.+|++++..++..|+
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9985 56788899999999999999964 78999999999999997654 556677889999999999999999999999
Q ss_pred HHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcCh-hhHHHHHhC-CcHHHH----HHHHhcc
Q 009320 367 LALYHLTL-IQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASN-EGRSAILDA-NGVSIL----VGMLRES 437 (537)
Q Consensus 367 ~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~~-~~r~~i~~~-g~I~~L----v~lL~~~ 437 (537)
++|.+|+. .++.+..+++.|+++.|+.+|... .+++.++.+|.+|+... ..+..+... ..+..+ .+-+..
T Consensus 189 ~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~- 267 (296)
T 1xqr_A 189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ- 267 (296)
T ss_dssp HHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc-
Confidence 99999986 577899999999999999999854 47888999999998863 333333321 112222 223332
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 009320 438 GSDSEATRENCVAALFALG 456 (537)
Q Consensus 438 ~~~~~~~~e~A~~~L~~L~ 456 (537)
+....++.+.|..++..+.
T Consensus 268 ~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 268 HEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp CGGGHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHc
Confidence 1124566666666665544
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=134.30 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCCCCCCccccccccccccCCeecC-CCccccHHHHHHHHHcC-CCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcC
Q 009320 20 SNPKQPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-FLPDLENGFKP-DFSTVIPNLAMKQTILNWCDTSG 96 (537)
Q Consensus 20 ~~~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~-~~~~l~pn~~l~~~i~~~~~~~~ 96 (537)
+...+++++|.||||+++|.|||+++ |||+||+.||.+|+... ...||.|++++ ....+.||..|+++|+.|...++
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999 99999999999999754 46899999997 56689999999999999998877
Q ss_pred C
Q 009320 97 V 97 (537)
Q Consensus 97 ~ 97 (537)
.
T Consensus 85 ~ 85 (92)
T 3ztg_A 85 Y 85 (92)
T ss_dssp C
T ss_pred H
Confidence 5
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.63 E-value=5.4e-17 Score=122.33 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=49.7
Q ss_pred ccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 28 EFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
.|.||||+++|+|||++ +|||+|||.||++|++.+ ..||+|++++...+|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 68999999999999999 999999999999999874 4699999999999999985
No 48
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.62 E-value=1.5e-16 Score=176.71 Aligned_cols=74 Identities=26% Similarity=0.344 Sum_probs=70.1
Q ss_pred CCCCCccccccccccccCCeecCCC-ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTG-QTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
.++|++|+|||++++|+|||++|+| +||||++|++|+.. +.+||.|++++...+++||++||+.|++||.+|+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999998 79999999999987 45899999999999999999999999999998875
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.58 E-value=8.2e-16 Score=133.92 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=64.3
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF-STVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~~~~ 94 (537)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|++++.. ..+.||..|+++++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4467899999999999999999999999999999999766689999999987 7899999999999988643
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1e-15 Score=146.45 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=63.7
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcC-CCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELG-FLPDLE--NGFKPDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~--~~~~~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
....+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+ |++.+...+|+||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 346789999999999999985 999999999999999764 457999 99999999999999999999999653
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=135.05 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=64.1
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS-TVIPNLAMKQTILNWCD 93 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~-~l~pn~~l~~~i~~~~~ 93 (537)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..|+++++.|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999998666899999999887 89999999999998863
No 52
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.5e-14 Score=120.64 Aligned_cols=71 Identities=3% Similarity=-0.034 Sum_probs=64.4
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTS 95 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 95 (537)
.+++++.||||++.|.|||++ +|||+||+.||.+|+..+ ..||.|+.++...++.||..++++|+.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 446789999999999999998 999999999999999863 58999999999888999999999999997654
No 53
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.47 E-value=2e-15 Score=120.43 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=58.1
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcC------CCCCCCCCCCCCCCCCcccHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELG------FLPDLENGFKPDFSTVIPNLAMKQT 87 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~~~~~l~pn~~l~~~ 87 (537)
...+.+++.||||++.|.|||+++|||+||+.||.+|+... ...||.|++++...++.+|+.|+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 45678899999999999999999999999999999999763 4579999999998889999877554
No 54
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1.6e-14 Score=116.73 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcC-----CCCCCCCCCCCCCCCCcccHHHHHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELG-----FLPDLENGFKPDFSTVIPNLAMKQT 87 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn~~l~~~ 87 (537)
....+.+++.||||++.|.+||+++|||+||+.||.+|+... ...||.|++++....+.||+.|+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 345678899999999999999999999999999999999873 4579999999998899999876554
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.45 E-value=3.6e-14 Score=120.31 Aligned_cols=68 Identities=7% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFS----TVIPNLAMKQTILNWC 92 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~----~l~pn~~l~~~i~~~~ 92 (537)
.+++++.||||+++|.|||++ +|||+||+.||.+|+..+ ..||.|+..+... .+.+|..|.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 457899999999999999998 999999999999999875 6899999998875 6889999999999874
No 56
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.44 E-value=3.5e-14 Score=118.64 Aligned_cols=71 Identities=4% Similarity=-0.118 Sum_probs=63.4
Q ss_pred CCCCccccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
.+.+++.||||+++|.|||+ ++|||+||+.||.+|+......||.|+.++....+.+|..+..+++..-..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 44678999999999999999 999999999999999998666899999999988999999888888776444
No 57
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.44 E-value=1.5e-11 Score=132.25 Aligned_cols=276 Identities=17% Similarity=0.120 Sum_probs=214.0
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCC-c-
Q 009320 221 PEEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEK-K- 295 (537)
Q Consensus 221 ~~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~-~- 295 (537)
+.++.|+.+|. +.-.+.++.|+..|+.+++.. +..+ ..++++.|+..|+. .|.++...++.+|.++...+ +
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 44688999994 677888999999999999753 3333 35568999999975 57888999999998876532 1
Q ss_pred ----------------cHHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHh-hcCchHHHHHHhc
Q 009320 296 ----------------NKVLI-VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIG-VLGALQPLMHALR 355 (537)
Q Consensus 296 ----------------~k~~i-~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~-~~g~l~~Lv~lL~ 355 (537)
+...+ .+.+.++.|+.+|...+..+|.+++.+|..|+.+.. .+..|. ..++++.|+.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 11223 246889999999999999999999999999987654 567777 5699999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcChhhHHHHHh-cCcHHHHHHHhcCC------chHHHHHHHHHHHhcCh-hhHHHHHhCCcH
Q 009320 356 AESERTRHDSALALYHLTLIQSNRVKLVK-LNAVATLLTMVKSG------ESTSRVLLILCNLAASN-EGRSAILDANGV 427 (537)
Q Consensus 356 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~g~v~~Lv~lL~~~------~~~~~al~~L~nLa~~~-~~r~~i~~~g~I 427 (537)
+..+.++..++..|.+|+....+.++++. +|+++.|+.++.+. .+.+.|+.+|.||.... .++..+.+.+++
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 99999999999999999997777777775 79999999999632 25778999999999865 689999999999
Q ss_pred HHHHHHHhccCC---CCHHHHHH---HHHHHHHhhcCC------hHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHHHHH
Q 009320 428 SILVGMLRESGS---DSEATREN---CVAALFALGHGN------LRFKGLAKEARAAEVLREVEERG--SQRAKEKAKRI 493 (537)
Q Consensus 428 ~~Lv~lL~~~~~---~~~~~~e~---A~~~L~~L~~~~------~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A~~l 493 (537)
+.|..+|...+. ..+....+ ++.++.-|+..+ ...+..+.+.|++..|++++... ...++..|..+
T Consensus 257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t 336 (651)
T 3grl_A 257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT 336 (651)
T ss_dssp GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 999999975211 12222333 556666666642 24677888999999999997654 57788888888
Q ss_pred HHHhhcC
Q 009320 494 LEMLKGR 500 (537)
Q Consensus 494 L~~L~~~ 500 (537)
+..+...
T Consensus 337 la~~irg 343 (651)
T 3grl_A 337 VSEVIRG 343 (651)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8655544
No 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.43 E-value=2.6e-14 Score=122.69 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF-------STVIPNLAMKQTILNWCD 93 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-------~~l~pn~~l~~~i~~~~~ 93 (537)
....++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|++.+.. ..+.+|..|..+|+.|..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 44566899999999999999999999999999999998777789999998863 577889999999999864
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.42 E-value=6.3e-14 Score=120.78 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=64.0
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
...++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++....+.||..+++.|..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 3467889999999999999999999999999999999988666899999999988899999999988875
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=107.62 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCCCCCCccccccccccccCCeecC-CCccccHHHHHHHHHcC-CCCCCCCCCCCC-CCCCccc
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-FLPDLENGFKPD-FSTVIPN 81 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~-~~~l~pn 81 (537)
...++++++.||||+++|.|||+++ |||+||+.||.+|+... ...||+|++++. ...+.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 3457788999999999999999999 99999999999999864 358999999754 3455565
No 61
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.5e-14 Score=115.54 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=58.5
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc-----CCCCCCCCCCCCCCCCCcccHHHHHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL-----GFLPDLENGFKPDFSTVIPNLAMKQT 87 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-----~~~~cp~~~~~~~~~~l~pn~~l~~~ 87 (537)
....+++++.||||.+.|.|||+++|||+||+.||.+|+.. +...||.|++.+...++.||+.|+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 34567889999999999999999999999999999999876 34589999999998889999876554
No 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.1e-14 Score=111.39 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=56.0
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTIL 89 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~ 89 (537)
..+..+++.||||++.|.|||+++|||+||+.||.+|+.. ...||+|++++. ..+.||..+...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 3456778999999999999999999999999999999976 458999999997 57889966654443
No 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=5.7e-14 Score=120.88 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTS 95 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 95 (537)
.+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++....+.||+.|+++++.|....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 446789999999999999999 9999999999999987 57999999998889999999999999886543
No 64
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=103.82 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=50.4
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 78 (537)
...+++++.||||++.|+|||+++|||+||+.||.+|+..+...||.|++++...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 346688999999999999999999999999999999997666789999999876543
No 65
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.40 E-value=9.4e-14 Score=127.03 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=61.8
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDF-STVIPNLAMKQTILNWCD 93 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~~~ 93 (537)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..+...||.|+.++.. ..+.||..|..+|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 345678999999999999998 9999999999999999877789999999853 568999999999999844
No 66
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.5e-13 Score=104.26 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=53.4
Q ss_pred CCCCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
..++.+++.||||++.|.|||++ +|||+||+.||.+|++. ...||.|++++...++.+|.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence 45678899999999999999998 99999999999999977 45899999999988887763
No 67
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2.2e-13 Score=116.19 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred CCCccccccccccccCCeecCCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGF--LPDLENGFKPDFSTVIPNLAMKQTILNWCD 93 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~--~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 93 (537)
+.+.+.||||++.|.|||+++|||+||+.||.+|+.... ..||.|+.++....+.+|..+.++++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998643 479999999999899999888888877754
No 68
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.36 E-value=1.4e-10 Score=124.93 Aligned_cols=278 Identities=14% Similarity=0.100 Sum_probs=215.8
Q ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHHHhhccChHH------------------HHHhhcCChHHHHHHHHccCCHHHHH
Q 009320 222 EEEELSKKLRS--ADIALQEEGVIALRRLTRTNEEL------------------RVSICTPNLLSALRNLVVSRYSIVQT 281 (537)
Q Consensus 222 ~~~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~------------------r~~i~~~g~i~~Lv~lL~s~~~~v~~ 281 (537)
+.+.|+..|+. .+.+....++++|.++...++.. -..+.+.+.|+.|+.+|.+.+..++.
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~ 140 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRW 140 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHH
Confidence 35789999954 67788888999998776443321 12345788999999999999999999
Q ss_pred HHHHHHHHhcCC-Cc-cHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch-hhHHhhcCchHHHHHHhccC
Q 009320 282 NAVASLVNLSLE-KK-NKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 282 ~a~~~L~nLs~~-~~-~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~I~~~g~l~~Lv~lL~~~ 357 (537)
.++.+|..|..+ ++ +.+.|.. .++++.|+.+|.+....+|-.++.+|.+|+..+.. +..++-.|+++.|+.++...
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 999999999874 33 6788885 69999999999999999999999999999987765 44444579999999999874
Q ss_pred C----HHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCc----h----HHH---HHHHHHHHhcC-------
Q 009320 358 S----ERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE----S----TSR---VLLILCNLAAS------- 414 (537)
Q Consensus 358 ~----~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~----~----~~~---al~~L~nLa~~------- 414 (537)
. ..+...++.+|.||.. +..|+..+.+.|.++.|..+|..++ + ... ++.++.-|+..
T Consensus 221 g~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t 300 (651)
T 3grl_A 221 GNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGAT 300 (651)
T ss_dssp TGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred CCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 3 4688999999999876 6679999999999999999996332 1 111 57777777664
Q ss_pred hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC---------cHHHHHHHHHh-CCH
Q 009320 415 NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEAR---------AAEVLREVEER-GSQ 484 (537)
Q Consensus 415 ~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g---------~i~~L~~ll~~-~s~ 484 (537)
..++..+.+.|++..|++++.. ..-...++..|+.++..+.+++...+..+.+.. ++..|+.++.+ ...
T Consensus 301 ~~nQ~~~~~~g~l~~Ll~ll~~-~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 301 SSCQKAMFQCGLLQQLCTILMA-TGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 2467788999999999999887 223788999999999999999988888776543 23333344433 357
Q ss_pred HHHHHHHHHHHHhhcC
Q 009320 485 RAKEKAKRILEMLKGR 500 (537)
Q Consensus 485 ~~k~~A~~lL~~L~~~ 500 (537)
.+|-.|..+++.+-..
T Consensus 380 ~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 380 VLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8888888888776654
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=4.2e-13 Score=118.88 Aligned_cols=64 Identities=9% Similarity=0.097 Sum_probs=53.5
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWC 92 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~ 92 (537)
.++|.||||.+.|.|||+++|||+||+.||.+|+.. ...||.|++++... .+|+.+...|+.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 457899999999999999999999999999999976 45799999988653 35666666776665
No 70
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=101.70 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=49.7
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLENGFKPDFSTV 78 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l 78 (537)
...+++++.||||++.|.|||+++|||+||+.||.+|++. +...||.|++++...++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3567889999999999999999999999999999999974 44579999999876554
No 71
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.3e-12 Score=99.91 Aligned_cols=55 Identities=20% Similarity=0.110 Sum_probs=50.2
Q ss_pred Cccccccccc-cccCC----eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 27 KEFLCPVSGS-LMFDP----VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 27 ~~~~CpI~~~-~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
+++.||||++ .|.+| |+++|||+||+.||.+|+..+...||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 5789999999999999998777789999999998888876
No 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.31 E-value=5.6e-13 Score=114.44 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=59.3
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI-PNLAMKQTILNW 91 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~-pn~~l~~~i~~~ 91 (537)
.+.+++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+.+++..+
T Consensus 16 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 16 FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp CCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 34456778999999999999999999999999999999988666899999999877765 456666666543
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.31 E-value=9.9e-13 Score=120.83 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++....+.||..+.+.|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 467899999999999999999999999999999999987666899999999988899999999888764
No 74
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=97.21 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=42.5
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLEN 69 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~ 69 (537)
...+.+++.||||++.|.|||+++|||+||+.||.+|++. +...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3467889999999999999999999999999999999985 34579987
No 75
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.27 E-value=4.1e-13 Score=119.17 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=56.8
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC---------CCCcccHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF---------STVIPNLAMKQTILN 90 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~---------~~l~pn~~l~~~i~~ 90 (537)
.++++|.||||+++|+|||+++|||+||+.||.+|+..+...||.|+.++.. ..+.|+..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 5678999999999999999999999999999999998776689999986532 245588888877764
No 76
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.21 E-value=4.9e-12 Score=98.39 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=52.0
Q ss_pred CCCCCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 23 KQPPKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
....+++.||||++.|.+| ++++|||+||+.||.+|++.. ..||.|++++...++.|++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 3456789999999999999 899999999999999999875 5899999999988888764
No 77
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=92.12 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLEN 69 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~ 69 (537)
...+.+++.||||++.|+|||+++|||+||+.||.+|+.. +...||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999999999999999999999999999865 45579987
No 78
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2e-11 Score=99.07 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCCCCCccccccccccccC----CeecCCCccccHHHHHHHHHcC--CCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFD----PVVVSTGQTFDRVSVQVCRELG--FLPDLENGFKPDFS 76 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~~ 76 (537)
....+.+++.||||++.|.+ |++++|||+||+.||.+|+... ...||.|++++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45567889999999999999 9999999999999999999875 45899999987653
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=96.51 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=46.8
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.....+++.||||++.|.|||+++|||+||+.||.+|+..+ ..||+|++.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 9 TAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp CCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred cccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 34456789999999999999999999999999999999774 589999998764
No 80
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=2.8e-09 Score=105.04 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=167.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|.++++.++..|++.|..+.. .++++.|+.+|.++++.++..|+.+|..+...+.....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~--- 90 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--- 90 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH---
Confidence 5789999999999999999999998862 24689999999999999999999999998754332211
Q ss_pred cCCHHHHH-HHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLI-DVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.++.|. .++.+.++.+|..++.+|..+..... .....+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 91 --l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------- 157 (280)
T 1oyz_A 91 --VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157 (280)
T ss_dssp --HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------
Confidence 233444 24677889999999999998863221 0123467899999999999999999999987743
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
.++++.|+.++.+.+ ++..++.+|..+... ...+++.|++++.+ .+..++..|+.+|..+.
T Consensus 158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 158 ---KATIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTT---
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhC---
Confidence 358999999998765 455688888776422 12346788888877 78999999999999885
Q ss_pred hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 460 LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 460 ~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
...+++.|+.++.+.+ ++..|...|..+..
T Consensus 221 --------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 221 --------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp --------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred --------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2346677777776544 77777777776643
No 81
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.8e-11 Score=92.62 Aligned_cols=54 Identities=13% Similarity=0.061 Sum_probs=47.7
Q ss_pred CCCCCCCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.....++++.||||++.|.+| |+++|||+||+.||.+|+.. ...||.|++++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 345667899999999999999 99999999999999999987 4589999998764
No 82
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.13 E-value=4.7e-11 Score=94.43 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=48.2
Q ss_pred CCCCCCccccccccccc--cCCeecC--CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLM--FDPVVVS--TGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m--~dPV~~~--~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 78 (537)
.....+++.||||++.| .||++.+ |||+||+.||.+|++.+...||.||+++....+
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34567899999999999 5778876 999999999999887767789999999876544
No 83
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.13 E-value=4.7e-09 Score=98.86 Aligned_cols=187 Identities=24% Similarity=0.265 Sum_probs=152.7
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhH
Q 009320 261 TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMA 340 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 340 (537)
..+.++.|+.+|.++++.++..|+..|..+.. ...++.|+.+|.+++..+|..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 35679999999999999999999999988753 367899999999999999999999997764
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhH
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGR 418 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r 418 (537)
...+++.|+.+|.+.++.++..|+.+|..+.. .++++.|+++|.+.+ ++..++.+|..+.
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------ 140 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------ 140 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------
Confidence 34678999999999999999999999988743 468899999998766 4556888887763
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+...++.|.+++.+ .++.++..|+.+|..+.. ..+++.|..++.+.++.+++.|...|..+.
T Consensus 141 ----~~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 141 ----DERAVEPLIKALKD---EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp ----CGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred ----CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 23578899999977 789999999999998842 235677888999999999999999999887
Q ss_pred cCC
Q 009320 499 GRE 501 (537)
Q Consensus 499 ~~~ 501 (537)
...
T Consensus 203 ~~~ 205 (211)
T 3ltm_A 203 SFN 205 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 664
No 84
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=93.35 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=48.7
Q ss_pred CccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 27 KEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
+++.||||++.|.+| ++++|||+||+.||.+|++. ...||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468999999999998 89999999999999999987 4589999999988877765
No 85
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.11 E-value=5.3e-09 Score=98.50 Aligned_cols=184 Identities=20% Similarity=0.157 Sum_probs=150.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.|++.|.+.+..++..|+..|..+.. ..+++.|+.+|.++++.++..++.+|..+..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 35789999999999999999999988753 3569999999999999999999999988752
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.+.++.|+.+|.+.++.+|..|+.+|..+. ....++.|+.+|.+.++.++..|+.+|.++..
T Consensus 80 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 141 (211)
T 3ltm_A 80 -ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 141 (211)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------
Confidence 357899999999999999999999998764 24578999999999999999999999988742
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
..+++.|+.++.+.+ ++..++.+|..+.. ..+++.|.+++.+ .++.++..|+.+|..+....
T Consensus 142 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCC
Confidence 358899999998765 45558888877632 3457888999988 78999999999999887644
No 86
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.09 E-value=8.5e-09 Score=96.27 Aligned_cols=180 Identities=20% Similarity=0.160 Sum_probs=150.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.+++.|.+.++.++..|+..|..+.. ...++.|+.+|.++++.++..|+.+|..+..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4789999999999999999999988763 2468999999999999999999999988753
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
...++.|+.+|.+.++.+|..|+.+|..+. ...+++.|+.+|.+.++.++..|+.+|..+..
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 256899999999999999999999998763 24578999999999999999999999988742
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..+++.|+.++.+.+ ++..++.+|..+. ...+++.|.+++.+ .++.++..|+.+|..+-
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 468999999998765 4556888887762 23457888899987 78999999999998764
No 87
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.09 E-value=8.8e-11 Score=93.05 Aligned_cols=61 Identities=10% Similarity=-0.059 Sum_probs=51.7
Q ss_pred CCCCCCCCccccccccccccCC---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 20 SNPKQPPKEFLCPVSGSLMFDP---VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 20 ~~~~~~p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
.......+++.||||++.|.+| ++++|||+||+.||.+|++.. ..||.|++.+....+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred CCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 3455667789999999999988 456999999999999999764 589999999988777766
No 88
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.08 E-value=7.6e-09 Score=96.63 Aligned_cols=184 Identities=24% Similarity=0.276 Sum_probs=152.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHH
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
.+..+.++.+|.++++.++..|+.+|..+.. ...++.|+.+|.++++.+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 3557889999999999999999999987763 356899999999999999999999997763
Q ss_pred hhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHH
Q 009320 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~ 419 (537)
...+++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.+|.+.+ ++..++.+|..+.
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------- 135 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------- 135 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 24678999999999999999999999988743 358899999998766 4555788887763
Q ss_pred HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 420 AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
+...++.|.+++.+ .++.++..|+.+|..+. . ..+++.|..++.+.++.++..|...|..+..
T Consensus 136 ---~~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 136 ---DERAVEPLIKALKD---EDGWVRQSAADALGEIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---CGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHC--S---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhC--c---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 24678899999987 78999999999999983 2 2356788888999999999999999988754
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.95 E-value=4.5e-09 Score=117.18 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=153.5
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHH-HHhccCCHHHHHHHHHHHHHhhcC--hhhHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLM-HALRAESERTRHDSALALYHLTLI--QSNRV 380 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~ 380 (537)
..+.+|+..|++++++.|..|+.+|.+|+.++..+..+...+++..++ .+|.+.+..++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 345678888999999999999999999999888888888888887765 468888999999999999999964 67899
Q ss_pred HHHhcCcHHHHHHHhcCC-----------------------chHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhc
Q 009320 381 KLVKLNAVATLLTMVKSG-----------------------ESTSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~-----------------------~~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
.+++.|++++|+.+|... +..+.++.+|.+||... +....+...+.++.|+..|..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 999999999999987420 02234778899998744 567778888899999998865
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHH---HHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 437 SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAE---VLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~---~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.......++..|+.+|+.|+..+....+.+.+.+... .|..+. ..+...+..++.+|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 3445678999999999999999888878777766433 333333 344445777888888864
No 90
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=2.2e-10 Score=84.60 Aligned_cols=46 Identities=7% Similarity=-0.133 Sum_probs=40.7
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+++.||||++.|.|||+++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 468999999999999999999999999999773 4579999988754
No 91
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.93 E-value=1.3e-08 Score=116.14 Aligned_cols=272 Identities=12% Similarity=0.084 Sum_probs=188.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh----cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC----TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+-++.|++.+.+++...++.|+..|..++...+.....-. -..+++.|+.++.+.++.++..|+.+|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 3467888899999999999999999999864432211100 133577778888888999999999999987754322
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ 376 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 376 (537)
...-.-...++.|+.++.+++.++|..|+.+|..++........-.-.++++.++.++.+.++.++..|+..+..++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 11101125678888889999999999999999999865432111011347788888888888999999999999988755
Q ss_pred hhHHHHHh---cCcHHHHHHHh-----------cC-----------C--chHHHHHHHHHHHhcChhhHHHHHhCCcHHH
Q 009320 377 SNRVKLVK---LNAVATLLTMV-----------KS-----------G--ESTSRVLLILCNLAASNEGRSAILDANGVSI 429 (537)
Q Consensus 377 ~n~~~iv~---~g~v~~Lv~lL-----------~~-----------~--~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~ 429 (537)
..+. .+. ...++.|+..+ .+ . ..+..+..+|..|+.... ..+. ...++.
T Consensus 288 ~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~ 363 (852)
T 4fdd_A 288 ICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPL 363 (852)
T ss_dssp THHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHH
Confidence 3333 222 25677777776 22 1 124446777777765321 1111 134567
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 430 LVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 430 Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.+++.+ .+..+++.|+.+|.+++.+......- .-..+++.|+.++.+.++.++..|+++|..+...
T Consensus 364 l~~~l~~---~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 364 LKELLFH---HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHTC---SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHhcC---CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7777766 68999999999999999866432211 1245688888899999999999999999888864
No 92
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=3.2e-10 Score=99.21 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 26 PKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
++++.||||++.|.|| |+++|||+||+.||.+|++.. ..||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 5789999999999999 999999999999999999874 489999999988777665
No 93
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.6e-09 Score=84.76 Aligned_cols=54 Identities=13% Similarity=-0.081 Sum_probs=46.7
Q ss_pred CCCCCCccccccccccccCCeec---CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVV---STGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
..+..++..||||++.|.+|+.+ +|||.|++.||.+|++.. ..||.|++++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 34667789999999999998776 999999999999999875 4899999987653
No 94
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.90 E-value=8.2e-10 Score=84.88 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=42.8
Q ss_pred CccccccccccccCC-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDP-VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
++..||||++.|.|| ++++|||+||+.||.+|+... ..||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 467899999999997 789999999999999999864 589999988764
No 95
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=3.2e-10 Score=87.76 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=46.5
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 77 (537)
..+.+++.||||++.|.+ |+++|||+||+.||.+|+.. ...||.|++++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 456778999999999999 99999999999999999984 568999998887544
No 96
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.89 E-value=8.5e-10 Score=80.94 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=42.3
Q ss_pred CccccccccccccC----CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFD----PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
++..||||++.|.+ |++++|||.|++.||.+|++.. ..||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46889999999987 8899999999999999999886 68999998764
No 97
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.87 E-value=1.1e-07 Score=93.58 Aligned_cols=197 Identities=12% Similarity=0.029 Sum_probs=148.6
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhH
Q 009320 261 TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMA 340 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 340 (537)
..+.++.|+..|.++++.++..|+.+|.++.. .+.++.|+.+|.+.++.+|..|+.+|..+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~- 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED- 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-
Confidence 35679999999999999999999999998862 2467899999999999999999999988864322111
Q ss_pred HhhcCchHHHHH-HhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhh
Q 009320 341 IGVLGALQPLMH-ALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEG 417 (537)
Q Consensus 341 I~~~g~l~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~ 417 (537)
..++.|.. ++.+.++.++..++.+|.++...... ....+++.|+.+|.+.+ ++..++.+|.++..
T Consensus 90 ----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 ----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp ----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 12333332 35667899999999999998632110 12356888999998765 44457777765432
Q ss_pred HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 418 RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 418 r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
..+++.|++++.+ .+..++..|+.+|..+....+ .+++.|+.++.+.++.++..|...|..+
T Consensus 158 ------~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 ------KATIPLLINLLKD---PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp -------CCHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 3589999999987 788999999999998854332 3467888888999999999999999887
Q ss_pred h
Q 009320 498 K 498 (537)
Q Consensus 498 ~ 498 (537)
.
T Consensus 220 ~ 220 (280)
T 1oyz_A 220 K 220 (280)
T ss_dssp T
T ss_pred C
Confidence 6
No 98
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=4.3e-09 Score=81.06 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=44.8
Q ss_pred CCCCCCcccccccccccc---CCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMF---DPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
..+...+..||||++.|. +|++++|||.|++.||.+|+... ..||.|+..+..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 345567899999999884 56889999999999999999874 479999998765
No 99
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.82 E-value=2.8e-09 Score=90.84 Aligned_cols=52 Identities=10% Similarity=-0.067 Sum_probs=44.0
Q ss_pred CCCCccccccccccccCCe------------------ecCCCccccHHHHHHHHHc----CCCCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFDPV------------------VVSTGQTFDRVSVQVCREL----GFLPDLENGFKPDF 75 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV------------------~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~ 75 (537)
..+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ....||.|+..+..
T Consensus 21 ~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3455679999999999987 7899999999999999963 34589999988764
No 100
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.82 E-value=1.2e-08 Score=116.36 Aligned_cols=268 Identities=14% Similarity=0.085 Sum_probs=182.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN--KVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~--k~~i 300 (537)
++.+++.+.+.+..++..|++.|..+....+... .-.-..+++.|..++.+++++++..++.+|..++..... +..+
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l 254 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 254 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3556666778899999999999988875433211 111135678888888899999999999999999863211 1111
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhc-----------c--C--------
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALR-----------A--E-------- 357 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~-----------~--~-------- 357 (537)
.+.++.++..+.+.+.+++..|+.++..++.....+..+.. ...++.|+..+. + .
T Consensus 255 --~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 255 --HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred --HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 24678888888888899999999999999876544443321 245677777762 2 0
Q ss_pred -CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHH
Q 009320 358 -SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGML 434 (537)
Q Consensus 358 -~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL 434 (537)
+-.+++.|+.+|..|+..... .++ ..+++.+.+++.+.+. ++.++.+|.+++......-.-.-...++.|+.++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l 409 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 112477788888887753221 111 2466777777776654 4458888988887543211111135678888888
Q ss_pred hccCCCCHHHHHHHHHHHHHhhcCChH--HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 435 RESGSDSEATRENCVAALFALGHGNLR--FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 435 ~~~~~~~~~~~e~A~~~L~~L~~~~~~--~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+ .++.++..|+++|.+++..-.. .... -..+++.|+..+.+.++++++.|...|..+....
T Consensus 410 ~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 410 SD---KKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp TC---SSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 77 7899999999999999863211 1111 1256778888888889999999999998887543
No 101
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=87.22 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=44.6
Q ss_pred CCCCccccccccccccC---CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
...++..||||++.|.+ +++++|||.||+.||.+|+.. +..||.|+.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34567899999999998 899999999999999999976 4589999987754
No 102
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.79 E-value=2.5e-09 Score=78.47 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=42.3
Q ss_pred CCccccccccccccC---CeecC-CCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD---PVVVS-TGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 26 p~~~~CpI~~~~m~d---PV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
.++..||||++.|.+ |++++ |||.|++.||.+|++. +..||.|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 567899999999999 88897 9999999999999976 458999998753
No 103
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.78 E-value=1.3e-09 Score=85.44 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=41.4
Q ss_pred CCCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+.+++.|+||++.+.|||+++|||+ ||+.|+.+| ..||.|++++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3457899999999999999999999 999999998 679999998764
No 104
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.77 E-value=1.1e-07 Score=99.64 Aligned_cols=271 Identities=13% Similarity=0.058 Sum_probs=182.4
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-C
Q 009320 221 PEEEELSKKLRSA--DIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSLE-K 294 (537)
Q Consensus 221 ~~~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~~-~ 294 (537)
+-++.|++.+.++ ++..+..|+..|..++... ...-.. .-..+++.++..+.+. +..++..|+.+|.++... +
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567888889887 8999999999999998643 111001 1124678888888877 799999999999987542 1
Q ss_pred ccH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh--hHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 295 KNK-VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK--MAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 295 ~~k-~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k--~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
++- ......-.++.|...+.+.+.++|..++.+|..++...... ..+. ..+++.++..+.+.++.++..|+..+..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 110 01111113566666777788999999999999987543211 1111 1667777888888888999999998888
Q ss_pred hhcChhhH------------------HHHHh---cCcHHHHHHHhcCC---------chHHHHHHHHHHHhcChhhHHHH
Q 009320 372 LTLIQSNR------------------VKLVK---LNAVATLLTMVKSG---------ESTSRVLLILCNLAASNEGRSAI 421 (537)
Q Consensus 372 Ls~~~~n~------------------~~iv~---~g~v~~Lv~lL~~~---------~~~~~al~~L~nLa~~~~~r~~i 421 (537)
++...... ..+++ ..+++.+++.|.+. ..+..++.+|..|+..-. ..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 87542110 01111 34667777777421 245557777777765322 112
Q ss_pred HhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 422 LDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL-R-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~-~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
. ...++.+...+.+ .+..+++.|+.+|..++.+.. . ....+ ..+++.|+.++.+.++.+|..|+++|..+..
T Consensus 364 ~-~~~~~~l~~~l~~---~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp H-HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcC---CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 2345666667766 689999999999999998532 1 11221 5688899999999999999999999988886
Q ss_pred CC
Q 009320 500 RE 501 (537)
Q Consensus 500 ~~ 501 (537)
.-
T Consensus 438 ~~ 439 (462)
T 1ibr_B 438 LL 439 (462)
T ss_dssp HG
T ss_pred hc
Confidence 53
No 105
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=4.1e-09 Score=82.68 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=44.1
Q ss_pred CCCccccccccccccCC---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLMFDP---VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
..++..||||++.|.+| ++++|||.|++.||.+|++.. ..||.|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 34678999999999999 889999999999999999874 589999988765
No 106
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.73 E-value=7.8e-07 Score=96.18 Aligned_cols=260 Identities=10% Similarity=0.064 Sum_probs=178.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
+.|...+.+++..++..|+..|..++...+.. ....-+++.+..+..+++..++..++.+|..+...-.. . ...
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~-~~~ 163 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A-VKA 163 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H-HHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--H-HHH
Confidence 34555557788999999999999998654332 11223578888888888889999999999888764321 1 123
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLV 383 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 383 (537)
..++.|..++.+.++++|..|+.+|..++..-... ......++.|..++.+.+..++..|+.+|..++..-.. ...
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~ 239 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDL 239 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HHH
Confidence 45778888888899999999999999987554322 22356788899999988999999999999888753211 122
Q ss_pred hcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-h
Q 009320 384 KLNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN-L 460 (537)
Q Consensus 384 ~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~-~ 460 (537)
...+++.+..++.+.+. +..++.+|..++..... . ......++.+++++.+ .++.++..|+.+|..++..- .
T Consensus 240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-E-ITKTDLVPAFQNLMKD---CEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHhCh
Confidence 34578888888877663 55577888777653211 1 1223567889999987 78899999999999998732 1
Q ss_pred HHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 461 RFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 461 ~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.......-..+++.+..++.+.+..+|+.+...|..+.
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11111112345566666676777777776665554443
No 107
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.71 E-value=2.2e-07 Score=100.48 Aligned_cols=258 Identities=11% Similarity=0.042 Sum_probs=181.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
+.+...+++.++.++..++..|..++..-.. ......++|.+..++.+.+++++..++.+|..+...-.. .. ...
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~-~~~ 401 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ-LSQ 401 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH-HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH-HHH
Confidence 4555666788899999998888887642111 111234688899999988999999999888877642111 11 123
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLV 383 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 383 (537)
..++.|..++.+.+..+|..++.+|..++..-... ......++.++.+|.+.+..++..|+.+|..++..-... ..
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~ 477 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WA 477 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hH
Confidence 56788888898889999999999998886421111 112346788889999888999999999999887532221 12
Q ss_pred hcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-Ch
Q 009320 384 KLNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG-NL 460 (537)
Q Consensus 384 ~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~ 460 (537)
...+++.|+.++.+.+. +..++.++..++..-. ... .....++.|++++.+ .++.++..++.+|..++.. +.
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~-~~~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QDI-TTKHMLPTVLRMAGD---PVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HHH-HHHHTHHHHHHGGGC---SCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HHH-HHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhch
Confidence 34678888887776553 4447777777765321 111 223567888888877 7899999999999999973 22
Q ss_pred HHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 461 RFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 461 ~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.. ....+++.|..++.+.+.++|+.|..+|..+.+
T Consensus 553 ~~----~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 553 ST----LQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HH----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hh----hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 21 123556777788888899999999999988764
No 108
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=6.2e-09 Score=106.03 Aligned_cols=49 Identities=10% Similarity=-0.099 Sum_probs=44.4
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
...||||.+.+.|||+++|||+||+.||.+|+......||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999986667899999988654
No 109
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=8.6e-09 Score=80.86 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=40.2
Q ss_pred CCCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+.+++.||||++.++|||+++|||+ ||+.|+.++ ..||.|++++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3557899999999999999999999 999999643 579999998865
No 110
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.64 E-value=1.1e-07 Score=106.04 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=144.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHH-HHHHccCCHHHHHHHHHHHHHhcCCC--ccHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSAL-RNLVVSRYSIVQTNAVASLVNLSLEK--KNKV 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~L-v~lL~s~~~~v~~~a~~~L~nLs~~~--~~k~ 298 (537)
.+..+++.|+|.++..|..|+.+|.+|+. ++..+..+...|+|..+ ..+|.+++.+++..|+.+|.||+.++ +...
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34678999999999999999999999995 78888888888888765 56788899999999999999999753 5678
Q ss_pred HHHhcCCHHHHHHHHccCC---------------------HHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhcc
Q 009320 299 LIVRSGFVPLLIDVLKSGS---------------------EESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~---------------------~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~ 356 (537)
.+++.|++++|..+|.... .++.++++.+|++|+...+ ....+...+.++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999885311 2345567888999986544 44566678899999999854
Q ss_pred C---CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCc---HHHHHHHhcC-CchHHHHHHHHHHHh
Q 009320 357 E---SERTRHDSALALYHLTLI-QSNRVKLVKLNA---VATLLTMVKS-GESTSRVLLILCNLA 412 (537)
Q Consensus 357 ~---~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~---v~~Lv~lL~~-~~~~~~al~~L~nLa 412 (537)
. ...+...|+.+|++|+.. .+....+.+.+. ...++.+... ......++++|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3 467899999999999875 455556666553 3333333333 234556788888873
No 111
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=5.8e-09 Score=85.65 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=47.9
Q ss_pred CCccccccccccccCCeec---CCCccccHHHHHHHHHc----CC---CCCCC--CCCC--CCCCCCcccHHHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVV---STGQTFDRVSVQVCREL----GF---LPDLE--NGFK--PDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~----~~---~~cp~--~~~~--~~~~~l~pn~~l~~~i~~~ 91 (537)
.+.|.||||.+.+.+|+++ +|||+||+.||.+|+.. +. -.||. |+.. +... .+.++...++++.|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~-~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN-EIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH-HHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH-HHHHHCCHHHHHHH
Confidence 3578999999999999886 79999999999997753 32 26998 9887 5442 22233334555666
Q ss_pred HH
Q 009320 92 CD 93 (537)
Q Consensus 92 ~~ 93 (537)
..
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.64 E-value=5.4e-09 Score=91.30 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=50.8
Q ss_pred CCCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 25 PPKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
-++.+.||||++.|.+| |+++|||+||..||.+|++.. .+||+|+..+...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 36789999999999998 999999999999999999874 5899999999888887764
No 113
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.58 E-value=4e-07 Score=99.71 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=179.8
Q ss_pred ChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 009320 220 APEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 220 ~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+.....+++.+.+.+...+..+...+..+++.+++.... ++..|.+.|.++++.++..|+.+|.++. .++....
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~ 121 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEY 121 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHH
Confidence 344567888888999999988888888888755544222 3567777788899999999999999886 2333333
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh-h
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS-N 378 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n 378 (537)
.++.+.++|.+.++.+|..|+.+|..+...... .+-..+.++.|..+|.+.++.++..|+.+|..++.... .
T Consensus 122 -----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 122 -----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp -----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred -----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 357889999999999999999999998764322 22235688999999999999999999999999987542 1
Q ss_pred HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 379 RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
...-...+.+..|+..+.+.+ .+...+.+|..++..++. . ....++.+..+|++ .+..++..|+.++..+.
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l~~---~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRLSH---ANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCSCS---STTHHHHHHHHHHHHSC
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHHcC---CChHHHHHHHHHHHHHh
Confidence 100011234667777665443 344567777666643221 1 11335666666766 67789999999999987
Q ss_pred cC---C-hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 457 HG---N-LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 457 ~~---~-~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
.. + +..+.++ ..+.+.|+.++ +.++.+|..|...|..+....+
T Consensus 268 ~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 268 ELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp CSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC
T ss_pred hccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh
Confidence 42 2 2233322 24456777655 4788999999988877775433
No 114
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.55 E-value=2.3e-06 Score=93.61 Aligned_cols=260 Identities=15% Similarity=0.136 Sum_probs=174.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHh
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK-NKVLIVR 302 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~-~k~~i~~ 302 (537)
+.+.+.|.+.++.++..|+.+|..+.+.+++. +...+.++.|..+|.++++.++..|+.+|..+..+.. ....-..
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 56788889999999999999999998765442 2235778999999999999999999999999987542 2100011
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc----Chhh
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL----IQSN 378 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~----~~~n 378 (537)
.+.+..|+..+...++..+...+.+|..+...++.. ....++.+..+|++.++.++..|+.++.++.. .++.
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 234667777787888888888888888877443211 13467778888888888999999999999863 2233
Q ss_pred HHHHHhcCcHHHHHHHhcCC-chHHHHHHHHHHHhcC-h---------------h---h-HHH------HHhCCcH----
Q 009320 379 RVKLVKLNAVATLLTMVKSG-ESTSRVLLILCNLAAS-N---------------E---G-RSA------ILDANGV---- 427 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~-~~~~~al~~L~nLa~~-~---------------~---~-r~~------i~~~g~I---- 427 (537)
...+ -..+.+.|+.++... +++.-++..|..++.. + + - +.+ +.+...+
T Consensus 277 ~~~~-~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv 355 (591)
T 2vgl_B 277 YNML-LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL 355 (591)
T ss_dssp HHHH-HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHH
T ss_pred HHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHH
Confidence 2222 234556666655422 2344466666666531 1 0 0 111 1122223
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
+.|.+++.. .+...+..++.++..++...+... ...++.|+.++.+....+...+...++.+-.
T Consensus 356 ~~L~~~l~~---~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 356 AELKEYATE---VDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHTTS---SCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 344455544 688999999999999998654222 2356788888888888887777777766543
No 115
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=8e-08 Score=76.45 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=40.7
Q ss_pred CccccccccccccC--------------Ceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFD--------------PVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~d--------------PV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56779999999988 4455 599999999999999875 589999988754
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.42 E-value=1.3e-07 Score=71.58 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=43.2
Q ss_pred CCccccccccccccCCeec--CCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVV--STGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+++..|+||++-++|+|++ ||||. ||..|+.+|+.. +..||.||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 4678899999999999988 99999 899999999876 4579999998753
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.40 E-value=1.8e-05 Score=87.06 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=109.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
......++.+.+.+...+..+.-.+..+++.+++.... ++..|.+-|.++++.++..|+.+|.++.. + .+
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----~~ 139 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS-S----EM 139 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----HH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----HH
Confidence 34456777778888888888888888888766553222 36677777788888888888888888873 1 22
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
+ ...++.+.+.|.+.++.+|..|+.+|..+...... +. .+.++.+..+|.+.++.++..|+.+|..++.......
T Consensus 140 ~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 140 C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 2 24567888888888888899888888888653221 11 2567777788888888888888888888876532211
Q ss_pred HHHhcCcHHHHHHHhc
Q 009320 381 KLVKLNAVATLLTMVK 396 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~ 396 (537)
... ...++.|+.+|.
T Consensus 215 ~~~-~~~v~~l~~~L~ 229 (618)
T 1w63_A 215 AHF-RKLVPQLVRILK 229 (618)
T ss_dssp HHH-HTTHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHH
Confidence 111 245666665553
No 118
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.38 E-value=1.4e-07 Score=71.18 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=42.4
Q ss_pred CccccccccccccCCeec--CCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVV--STGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+..|+||++-++|||++ ||||. ||..|+.+|++.+ ..||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 357899999999999998 99998 9999999998764 589999998753
No 119
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.37 E-value=6.6e-08 Score=76.52 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=40.3
Q ss_pred CCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.++..|+||++.+.|||++||||. ||+.|+.+|+ .||.|+.++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 456789999999999999999999 9999998772 89999998765
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.35 E-value=1.7e-05 Score=89.95 Aligned_cols=272 Identities=13% Similarity=0.055 Sum_probs=178.8
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-Cc
Q 009320 221 PEEEELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSLE-KK 295 (537)
Q Consensus 221 ~~~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~~-~~ 295 (537)
+-++.|++.+.+. ++..+..|+..|..++.........-.-..+++.+...+.++ +..++..|+.+|.++... ..
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888887 899999999999999864211100111234567777777766 689999999999987642 11
Q ss_pred c-HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch--hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 296 N-KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN--KMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 296 ~-k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
+ .........++.+...+...+.++|..++.+|..+...... ...+ ...+++.++..+.+.++.++..|+..+.++
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 00111112466777777778899999999999988754322 1111 236778888888777888999999888887
Q ss_pred hcChhh---------------------HHHHHhcCcHHHHHHHhcC-------C--chHHHHHHHHHHHhcChhhHHHHH
Q 009320 373 TLIQSN---------------------RVKLVKLNAVATLLTMVKS-------G--ESTSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 373 s~~~~n---------------------~~~iv~~g~v~~Lv~lL~~-------~--~~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+..... ..+-.-..+++.+++.|.. . ..+..++.+|..++..-.. .+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~ 364 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH
Confidence 653210 0000013467777777742 1 2344566777666553211 111
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL-R-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~-~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
...++.+...+.+ .+..+++.|+.+|..++.+.. . ....+ ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 365 -~~~l~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 365 -PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp -HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHccC---CChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 1334555566665 689999999999999998542 2 22322 35788888899999999999999999888865
Q ss_pred C
Q 009320 501 E 501 (537)
Q Consensus 501 ~ 501 (537)
.
T Consensus 439 ~ 439 (876)
T 1qgr_A 439 L 439 (876)
T ss_dssp C
T ss_pred C
Confidence 3
No 121
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=6.7e-07 Score=68.47 Aligned_cols=49 Identities=12% Similarity=-0.065 Sum_probs=41.9
Q ss_pred CCCCCCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+..-.++..|+||++-++|||++||||. ||..|+.+ ...||.|++++..
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3344568999999999999999999999 99999984 3589999998865
No 122
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.32 E-value=8.7e-08 Score=97.03 Aligned_cols=45 Identities=11% Similarity=-0.110 Sum_probs=40.9
Q ss_pred CCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+++.||||++.+.|||++||||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 579999998764
No 123
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.30 E-value=7.1e-05 Score=82.24 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN-KVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~-k~~i~ 301 (537)
++.+.+.|.+.++.++..|+.++..+.+.+++.. .+.++.+..+|.+.++.++..|+.+|..+...... ...+
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~- 217 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF- 217 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH-
Confidence 4667788889999999999999999987665432 25778888889999999999999999999864322 1122
Q ss_pred hcCCHHHHHHHHcc---------------CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc------CCHH
Q 009320 302 RSGFVPLLIDVLKS---------------GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA------ESER 360 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~------~~~~ 360 (537)
...++.|+.+|.. .++-.+..++.+|..++..+... ....++.|..++.. .+..
T Consensus 218 -~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~a 292 (618)
T 1w63_A 218 -RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNA 292 (618)
T ss_dssp -HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHH
Confidence 2678888887763 36788888899998887654321 12344455555432 2346
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcC--CchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccC
Q 009320 361 TRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESG 438 (537)
Q Consensus 361 ~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~--~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~ 438 (537)
+...|+.++.++...+..+ ..++..|..+|.+ .+.+.-++..|..++... ..+.. .....++..+.+
T Consensus 293 V~~ea~~~i~~l~~~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d-- 361 (618)
T 1w63_A 293 ILYETVLTIMDIKSESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKD-- 361 (618)
T ss_dssp HHHHHHHHHHHSCCCHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGS--
T ss_pred HHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccC--
Confidence 7788888888876543222 2467888888864 446777888888876532 22232 345677888877
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 439 SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 439 ~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+..++..|+.+|..++.... ...+ +..|+..+.+.+...|+.+...|..++..-
T Consensus 362 -~d~~Ir~~alelL~~l~~~~n-v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 362 -LDVSIKRRAMELSFALVNGNN-IRGM------MKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp -SCHHHHHHHHHHHHHHCCSSS-THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred -CChhHHHHHHHHHHHHccccc-HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 789999999999999987532 2222 357777788889999999999998888754
No 124
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.29 E-value=8.9e-06 Score=92.16 Aligned_cols=264 Identities=11% Similarity=0.095 Sum_probs=171.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCh-H-HHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-c---cH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNE-E-LRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-K---NK 297 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~-~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~---~k 297 (537)
+.+.+.|.+.++..+..|+..|..++.... . ....+ ..+++.|+..+.+.++.++..++.+|..++..- . ..
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 445555678899999999999999996532 2 11222 246888999988899999999999998887521 1 01
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHh--hcCchHHHHHHhccCC--HHHHHHHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIG--VLGALQPLMHALRAES--ERTRHDSALALYH 371 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~--~~g~l~~Lv~lL~~~~--~~~~~~A~~aL~n 371 (537)
..+ ...++.|+..|.+. +.++..|+.+|.+++..-. ....+. -..+++.|+.++.+.+ +.++..++.+|..
T Consensus 450 ~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 450 QHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 111 13467888888765 8999999999998875321 011121 1356788888887543 6788888999988
Q ss_pred hhcCh-hhHHHHHhcCcHHHHHHHhcCC-----------------chHHHHHHHHHHHhcChhh--HHHHHhCCcHHHHH
Q 009320 372 LTLIQ-SNRVKLVKLNAVATLLTMVKSG-----------------ESTSRVLLILCNLAASNEG--RSAILDANGVSILV 431 (537)
Q Consensus 372 Ls~~~-~n~~~iv~~g~v~~Lv~lL~~~-----------------~~~~~al~~L~nLa~~~~~--r~~i~~~g~I~~Lv 431 (537)
+.... ......+ ..+++.+++.+... ..+..++.+|.+++..-.. ...+ ...++.++
T Consensus 527 l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~ 603 (861)
T 2bpt_A 527 MVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFF 603 (861)
T ss_dssp HHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHH
T ss_pred HHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH
Confidence 87532 2222222 24666777766421 1233467777777652211 1111 23457777
Q ss_pred HHHhccCCCCH-HHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 432 GMLRESGSDSE-ATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 432 ~lL~~~~~~~~-~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.++.. .+. .+++.++.++..++.. .......+. .+++.|+..+.+.++.++..|..++..+...
T Consensus 604 ~~l~~---~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 604 RLLEK---KDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHS---TTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcc---CCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 78876 334 7889999999888863 233333332 3678888888777888998888888766644
No 125
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.25 E-value=6.2e-07 Score=74.93 Aligned_cols=47 Identities=6% Similarity=-0.089 Sum_probs=40.5
Q ss_pred CccccccccccccCC------------------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDP------------------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP------------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +..||.|++.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356799999999988 44799999999999999987 568999998764
No 126
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.19 E-value=3e-05 Score=87.80 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=175.1
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHH-H-HHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCc
Q 009320 222 EEEELSKKLRSA-DIALQEEGVIALRRLTRTNEEL-R-VSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSL-EKK 295 (537)
Q Consensus 222 ~~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~-r-~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~-~~~ 295 (537)
-++.|++.+.++ ++..+..|+..|..+++.-... + ..-....+++.+...+.+. +.+++..++.+|.++.. .+.
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357788888777 8999999999999998642211 1 0001123567777777776 88999999999987643 111
Q ss_pred cH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch--hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 296 NK-VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN--KMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 296 ~k-~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
+- ........++.|...+.+++.++|..++.+|..++..... ...+ ...+++.++..+.+.++.++..|+.++..+
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 10 0001112466677778888899999999999988754321 1111 115666777778888889999999998888
Q ss_pred hcChhhH------------------HHHHhcCcHHHHHHHhcCC---------chHHHHHHHHHHHhcChhhHHHHHhCC
Q 009320 373 TLIQSNR------------------VKLVKLNAVATLLTMVKSG---------ESTSRVLLILCNLAASNEGRSAILDAN 425 (537)
Q Consensus 373 s~~~~n~------------------~~iv~~g~v~~Lv~lL~~~---------~~~~~al~~L~nLa~~~~~r~~i~~~g 425 (537)
+...... ...+ ..+++.|+..|.+. ..+..+..+|..++..-. ..+. ..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~ 369 (861)
T 2bpt_A 294 CEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EP 369 (861)
T ss_dssp HHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HH
T ss_pred HHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HH
Confidence 7542110 1111 45788888887631 134457777777765321 0111 12
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGHGN--LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~--~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.++.+.+.+.+ .+...++.|+.+|..++.+. ......+ ..+++.|+..+.+.++.++..+.++|..+...
T Consensus 370 l~~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 370 VLEFVEQNITA---DNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 34555556655 67899999999999999754 2232332 24677888888888999999999988777654
No 127
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.14 E-value=6e-06 Score=97.88 Aligned_cols=269 Identities=15% Similarity=0.093 Sum_probs=179.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.+..+++.+.+.+.+.+..|...|.+..+.....-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~- 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV- 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH-
Confidence 456788899999999999999988887643211000001124578888888889999999999999999863222 111
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh------hHHhhcCchHHHHHHhc-cCCHHHHHHHHHHHHHhhc
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK------MAIGVLGALQPLMHALR-AESERTRHDSALALYHLTL 374 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------~~I~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~nLs~ 374 (537)
...++.|+..|.+++..+|..|+.+|..++..-... ..-.....++.|+..+. +.+...+..|+.+|..++.
T Consensus 85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 234677888888888889999999998876432211 11113467899999998 4788899999999999874
Q ss_pred C-hh-hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 375 I-QS-NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 375 ~-~~-n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
. +. -.. .-...++.|+..|.+.+ ++..++.+|..++..... .+. ...++.+++.|... .+...+..++.
T Consensus 164 ~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~--~~~~~r~~a~~ 236 (1230)
T 1u6g_C 164 RQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKN--DSMSTTRTYIQ 236 (1230)
T ss_dssp HTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHT--CSSCSCTTHHH
T ss_pred HhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccC--CchhHHHHHHH
Confidence 2 11 000 11346666777776554 567789999988875432 122 34578888888762 22345666778
Q ss_pred HHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 451 ALFALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 451 ~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
+|..++.. +...... -..+++.++..+.+.++.+|+.|..++..+....+
T Consensus 237 ~l~~l~~~~~~~~~~~--l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHSSGGGTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 88877763 2222211 14577888888888888999999988877766543
No 128
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.14 E-value=3.4e-05 Score=87.54 Aligned_cols=267 Identities=10% Similarity=0.061 Sum_probs=171.5
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHH-HHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHH
Q 009320 224 EELSKKLRSA--DIALQEEGVIALRRLTRTNEELR-VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVL 299 (537)
Q Consensus 224 ~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~ 299 (537)
+.++..|.+. +..++..|++.|..+...-..+- .......+++.+...+.+.+.+++..++.+|..+.. ..+.-..
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 254 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET 254 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566666655 68899999999998774322110 000011257777777778889999999999998876 3322222
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-------------------hhhHHh--hcCchHHHHHHhcc--
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-------------------NKMAIG--VLGALQPLMHALRA-- 356 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-------------------~k~~I~--~~g~l~~Lv~lL~~-- 356 (537)
.+....++.++..+...+.+++..|+.++..++.... ....+. -...++.++..|..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 3334678888888888888999999988888864320 000110 13456777777753
Q ss_pred -----CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch--HHHHHHHHHHHhcCh--hhHHHHHhCCcH
Q 009320 357 -----ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES--TSRVLLILCNLAASN--EGRSAILDANGV 427 (537)
Q Consensus 357 -----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~--~~r~~i~~~g~I 427 (537)
.+...+..|+.+|..|+..-.. .++ ..+++.+...+.+.+. ++.++.+|..++... +...... ...+
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l 410 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAM 410 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 2345777888888887653221 111 2455666666666654 455888888888643 2222222 3467
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHH---HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGHGNLRF---KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~---~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.++..|.+ .+..++..|+++|.+++...... ...+ ..+++.|+..+.+ ++++++.|..+|..+...
T Consensus 411 ~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 411 PTLIELMKD---PSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA-EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHTC---SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC---CCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 888888877 68999999999999999743211 1111 2345667777666 488999999998877653
No 129
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.04 E-value=3.3e-05 Score=74.05 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=129.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC--CccHHHHH
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE--KKNKVLIV 301 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~--~~~k~~i~ 301 (537)
.+.+.+.+.++..+..|+..|..+....+..... .-..+++.|...+. +.+..++..|+.+|..|+.. +....++
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 4778889999999999999999988652211000 01245778888884 88999999999999999852 2111211
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh-cC-hh--
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLT-LI-QS-- 377 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~-~~-- 377 (537)
...++.|+..+.+.+..+|..|..+|..+...... ...++.|...|++.++.++..++..|..+. .. ++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 24689999999999999999999999998765432 235778889999889999999999999954 33 22
Q ss_pred hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 378 NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
....+ ..+++.|+.+|.+.. ++..|..+|..++.
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 368999999997665 55667777777654
No 130
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=5.5e-06 Score=65.42 Aligned_cols=51 Identities=8% Similarity=0.009 Sum_probs=42.9
Q ss_pred CCCccccccccccc--cCCeecCCC-----ccccHHHHHHHHHcCC-CCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLM--FDPVVVSTG-----QTFDRVSVQVCRELGF-LPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m--~dPV~~~~G-----~ty~r~~i~~~~~~~~-~~cp~~~~~~~~ 75 (537)
..++-.|+||++-+ .+|+++||+ |.|-+.||.+|+...+ ..||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999877 579999996 9999999999998743 589999998864
No 131
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.99 E-value=0.00016 Score=75.31 Aligned_cols=221 Identities=11% Similarity=0.044 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcC--CHHHHHHHHcc---------------C--CHHHHHHHHHHHHHcccCcc
Q 009320 276 YSIVQTNAVASLVNLSLEKKNKVLIVRSG--FVPLLIDVLKS---------------G--SEESQEHAAGALFSLALEDE 336 (537)
Q Consensus 276 ~~~v~~~a~~~L~nLs~~~~~k~~i~~~g--~v~~Lv~lL~~---------------~--~~e~~~~Aa~~L~~Ls~~~~ 336 (537)
+...+.-++.+|..|...++.|..+.+.+ .+++++.++.. + ..+++-+++-+++-|++.++
T Consensus 181 ~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 45556678888888888888888887643 46777665431 1 25667889999999999988
Q ss_pred hhhHHhhcCch--HHHHHHhccC-CHHHHHHHHHHHHHhhcCh-----hhHHHHH-hcCcHHHHHHHhcCC-----chHH
Q 009320 337 NKMAIGVLGAL--QPLMHALRAE-SERTRHDSALALYHLTLIQ-----SNRVKLV-KLNAVATLLTMVKSG-----ESTS 402 (537)
Q Consensus 337 ~k~~I~~~g~l--~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-----~n~~~iv-~~g~v~~Lv~lL~~~-----~~~~ 402 (537)
....+...+.. +.|+++++.. .+++.+-++.+|.||.... .....++ ..++ ..+++.|... +..+
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 66666655533 6778888765 6889999999999987643 2223233 3444 5566766532 2211
Q ss_pred H-------HHHHHHHHhcChhhHHHH------------------------HhCC--cHHHHHHHHhccC-------CCCH
Q 009320 403 R-------VLLILCNLAASNEGRSAI------------------------LDAN--GVSILVGMLRESG-------SDSE 442 (537)
Q Consensus 403 ~-------al~~L~nLa~~~~~r~~i------------------------~~~g--~I~~Lv~lL~~~~-------~~~~ 442 (537)
. .-..+..+++.++.+.++ .+.+ .+..|+++|.... +.++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 1 112222333233332222 1222 3789999997410 1357
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 443 ATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 443 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
.+..-|+.=+..++++.+.-+.++.+.|+=..+++++.+.++++|..|..+++.+
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 7788888889999997667788888999999999999999999999999999544
No 132
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.98 E-value=0.00045 Score=75.86 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=111.9
Q ss_pred CChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 009320 219 LAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV 298 (537)
Q Consensus 219 ~~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~ 298 (537)
++..-...++.+.+.+...+..+.-.+..+++.+++.-.. ++..+.+-|.++++-++..|+.+|.++.. +
T Consensus 72 ~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~---- 141 (621)
T 2vgl_A 72 IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS-R---- 141 (621)
T ss_dssp CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-H----
T ss_pred CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-H----
Confidence 3344457888889999999999999999999877654322 25677777789999999999999999964 2
Q ss_pred HHHhcCCHHHHHHHH--ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 299 LIVRSGFVPLLIDVL--KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL--~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
.+++ ..++.+.+.| .+.++-+|..|+-++..+..... ..+-..+.++.|.++|.+.++.++..|+.+|..++..
T Consensus 142 e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 142 EMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 2333 4567888999 78899999999999998875432 1221247899999999988999999999999998763
No 133
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.97 E-value=3.6e-05 Score=80.25 Aligned_cols=229 Identities=10% Similarity=0.070 Sum_probs=148.1
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHH-HHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHH
Q 009320 223 EEELSKKLRSA--DIALQEEGVIALRRLTRTNEELR-VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKV 298 (537)
Q Consensus 223 ~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~k~ 298 (537)
++.++..|.+. +..++..|++++.++...-...- ......-+++.|...+.+.+.+++..++.+|..+.... +.-.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 253 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777766 78999999999988653211110 00001114666777777889999999999999887522 1101
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc------------------hhhHHhh---cCchHHHHHHhccC
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE------------------NKMAIGV---LGALQPLMHALRAE 357 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~------------------~k~~I~~---~g~l~~Lv~lL~~~ 357 (537)
..+..+.++.++..+...+.+++..|+.++..++.... ....+.+ ..+++.|+..|...
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~ 333 (462)
T 1ibr_B 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (462)
T ss_dssp TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc
Confidence 11111567777888888889999999998888865420 0001111 34567777777542
Q ss_pred -------CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChh--hHHHHHhCCc
Q 009320 358 -------SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES--TSRVLLILCNLAASNE--GRSAILDANG 426 (537)
Q Consensus 358 -------~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~--~r~~i~~~g~ 426 (537)
+...+..|+.+|..|+..-.. .++ ..+++.+.+.+.+.++ ++.++.+|..++.... .-.... ...
T Consensus 334 d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~ 409 (462)
T 1ibr_B 334 DENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQA 409 (462)
T ss_dssp CSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHH
Confidence 235778888888888753221 122 3466777777777664 4448888888886432 100111 456
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
++.|+.+|.+ .++.++..|+++|.+++..
T Consensus 410 ~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 410 MPTLIELMKD---PSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHGGGC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHHh
Confidence 8999999987 7899999999999999973
No 134
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.91 E-value=1.4e-06 Score=73.91 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred cccccccccccCCee------------------cCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVV------------------VSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~------------------~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
=.|+||++-|.+|.+ ++|||.|.+.||.+|+.. +..||.|++++..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 479999999998632 589999999999999987 5689999987643
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.91 E-value=0.00013 Score=68.55 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=137.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
+..|+++|...++.++..|+..|..+-+.-+.......-..+++.++.++.+.+..+...|+.+|..|-.+ +-....+.
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 46788889999999999999999999876444444444456799999999999999999999999977664 33344443
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
. .+.+|..++.+++.-.++.|+..|..+......+ .++.-+.+++.+.+.+++..|+.+|.+++...+....
T Consensus 115 K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 115 K--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp H--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred H--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 3 3568899999999999999999999994333333 4556788899888999999999999999874432211
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN 415 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~ 415 (537)
-.+++.-+-.+|+..+ ..++|+.+|..+...+
T Consensus 187 --~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 187 --LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp --GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 1223334445566444 6888999999998865
No 136
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.90 E-value=6.3e-05 Score=89.15 Aligned_cols=223 Identities=15% Similarity=0.145 Sum_probs=151.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Ccc-----
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKN----- 296 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~----- 296 (537)
++.+++.|.+.++.+|..|+..|..++...... .+ ..+++.|+..+.++++.++..++.+|..++.. ...
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 456888888899999999999999998643331 11 23577888888888888899999998887752 111
Q ss_pred HHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...-.-...++.|+..+. +++..++..|+.+|..++........-.-...++.|+..|.+.++.++..|+.+|..++..
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 011112356889999998 5789999999999999874211100001134677888888888889999999999998865
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
.... + -...++.|++.|.+. ..+..++.+|..++..... .+.. ...++.++..+.. .++.+++.++.
T Consensus 206 ~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d---~~~~vR~~a~~ 277 (1230)
T 1u6g_C 206 CGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV---DDDELREYCIQ 277 (1230)
T ss_dssp C-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS---CCTTTHHHHHH
T ss_pred cCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 3322 1 235788888887532 2344466666666542211 1211 3567888888876 67788999999
Q ss_pred HHHHhhc
Q 009320 451 ALFALGH 457 (537)
Q Consensus 451 ~L~~L~~ 457 (537)
++..++.
T Consensus 278 ~l~~l~~ 284 (1230)
T 1u6g_C 278 AFESFVR 284 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888887
No 137
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.89 E-value=0.0012 Score=72.50 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=165.9
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 224 EELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+.+.+.| .+.++.++..|+.++..+.+.+++. +...+.++.|..+|.+.++.++..|+.+|..++..... .+
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~- 222 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF- 222 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH-
Confidence 4677777 7789999999999999998765532 22358899999999999999999999999998763321 11
Q ss_pred hcCCHHHHHHHHc----cC-------------CHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHHhc-------
Q 009320 302 RSGFVPLLIDVLK----SG-------------SEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHALR------- 355 (537)
Q Consensus 302 ~~g~v~~Lv~lL~----~~-------------~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~lL~------- 355 (537)
...++.++..|. .+ ++-.+.....+|..++..++ .+..+. ..+..++..+.
T Consensus 223 -~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 223 -KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKK 299 (621)
T ss_dssp -TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSS
T ss_pred -HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccccc
Confidence 133444554432 22 57788888888888875432 222222 23333333321
Q ss_pred --cCCH--HHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHH
Q 009320 356 --AESE--RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSI 429 (537)
Q Consensus 356 --~~~~--~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~ 429 (537)
+.+. .+.-.|+.++..+...++... .++..|..+|.+.+ .+--++..|..++........+. .....
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~~~~ 372 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--THIET 372 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TTHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HHHHH
Confidence 1122 566677788888764332222 35667888886443 55558889988887542223333 34677
Q ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 430 LVGMLR-ESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 430 Lv~lL~-~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
++..|. + .+..++..++.+|..++... .... ++..|...+.+.+...++.+...+..++..
T Consensus 373 i~~~L~~d---~d~~Ir~~aL~lL~~l~~~~-Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 373 VINALKTE---RDVSVRQRAVDLLYAMCDRS-NAQQ------IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHTTC---CCHHHHHHHHHHHHHHCCHH-HHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccC---CCHhHHHHHHHHHHHHcChh-hHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 788887 6 78899999999999998532 2222 244677777788888888888888777643
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.87 E-value=1.8e-06 Score=74.84 Aligned_cols=117 Identities=14% Similarity=0.035 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.++..|++.++.++..|++.|..+.. ..++.|+.+|.++++.++..|+.+|.++..
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 3568888888888888877777665532 126899999999999999999999998863
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
...++.|+..|.+.++.+|..|+.+|..+. ...+++.|+.+|++.++.++..|+.+|..
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 124789999999999999999999998764 23568899999998888999999888754
No 139
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.85 E-value=0.00031 Score=66.01 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=152.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMA 340 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~ 340 (537)
.+..|..+|++.|+.++.+++.+|..+-+.- ..+...+ ...++.++.++++.+..+...|+.+|..|-.+.+ ....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4788999999999999999999999998753 2333333 3578999999999999999999999998865543 2222
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHH--HHHHHHHHhcChhhH
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSR--VLLILCNLAASNEGR 418 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~--al~~L~nLa~~~~~r 418 (537)
.. -++..|.+++.++++-....|+..|..|...... -+++..+..++.+.+...+ ++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 21 2456788899999999999999999888432222 2467778888876664444 788999998755322
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHH-HH-HhCCHHHHHHHHHHHHH
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLRE-VE-ERGSQRAKEKAKRILEM 496 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~-ll-~~~s~~~k~~A~~lL~~ 496 (537)
..+ .+.+.-+-.+|.+ .++.+++.|+.+|..+....-. ..++.+--.+-..+. +. ..|.|..+.+|..+-..
T Consensus 185 ~i~--~~I~~eI~elL~~---eD~~l~e~aLd~Le~ils~pi~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQN---DNEFIVELALDVLEKALSFPLL-ENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDL 258 (265)
T ss_dssp CCG--GGTTTTHHHHHTC---SCHHHHHHHHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCccc-HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 211 2345567778887 7999999999999999885411 111111111222232 33 46788888888766544
Q ss_pred h
Q 009320 497 L 497 (537)
Q Consensus 497 L 497 (537)
+
T Consensus 259 l 259 (265)
T 3b2a_A 259 I 259 (265)
T ss_dssp H
T ss_pred H
Confidence 3
No 140
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.81 E-value=0.00021 Score=68.41 Aligned_cols=182 Identities=12% Similarity=0.003 Sum_probs=130.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhc
Q 009320 308 LLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLTLIQSNRVKLVKL 385 (537)
Q Consensus 308 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~ 385 (537)
.+...+.+.+...|..|+..|..+... +...... -..+++.|...|. +.+..++..|+.+|..|+..-.....-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 477788888999999999999888754 2211000 1245778888884 888999999999999998532221112224
Q ss_pred CcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChH-
Q 009320 386 NAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH-GNLR- 461 (537)
Q Consensus 386 g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~- 461 (537)
.+++.|+..+.+.. +++.+..+|.+++..... . ..++.|...|.+ .++.+++.++.+|..+.. ....
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~---~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSN---KNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHcCCCC
Confidence 58899999998765 556688888888764321 1 235677777776 689999999999999654 3322
Q ss_pred -HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 462 -FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 462 -~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
....+ ..+++.|+.++.+.++++|..|..+|..+...-
T Consensus 169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 22332 257889999999999999999999998877553
No 141
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00019 Score=69.48 Aligned_cols=186 Identities=11% Similarity=0.114 Sum_probs=128.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hhccChHHHHHhhc-CChHHHHHHHH-ccCCHHHHHHHHHHHHHhcCC---CccH-
Q 009320 225 ELSKKLRSADIALQEEGVIALRR-LTRTNEELRVSICT-PNLLSALRNLV-VSRYSIVQTNAVASLVNLSLE---KKNK- 297 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~---~~~k- 297 (537)
.+-+.|.|.++.++..|+..|.. +....+........ ..++..|...+ .+.+..++..|+.+|..|+.. +.-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667789999999999999999 87432211100011 23577788888 688999999999999998852 2221
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
.+.. -.++.|+..+.+....++..+..+|..++..-+. .... -...++.|+..|.+.++.++..++.+|..+...
T Consensus 100 ~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2222 2588999999988899999988888887653211 0110 123677888999988999999999999987753
Q ss_pred hhh---HH-HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 376 QSN---RV-KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 376 ~~n---~~-~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
... .. ..+...+++.|.+++.+.+ ++..|..+|..++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 321 11 2223579999999998765 56667777766643
No 142
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.53 E-value=0.0017 Score=65.90 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=154.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG 304 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g 304 (537)
.+++.+.+.+...+....-.+.++++..++.- =++..|.+-+.++++-++..|+.+|.++...+ ....
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~~----- 139 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQA----- 139 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THHH-----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHHH-----
Confidence 45667789999999988888999987643321 23677888888999999999999999997543 3333
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009320 305 FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVK 384 (537)
Q Consensus 305 ~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 384 (537)
..+.+-+.|.+.++-+|..|+-+...|..... ..+ .+.++.+-+++.+.++.+.-+|+.+|+.+...+.
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~------- 208 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR------- 208 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-------
Confidence 34567778889999999999988888764432 222 3688899999999999999999999999986532
Q ss_pred cCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHH
Q 009320 385 LNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRF 462 (537)
Q Consensus 385 ~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 462 (537)
.++..|+..+..+.. +-.-+.+|..+...-..-..-.....++.|...|++ .++.+.-.|+.++..+...+..
T Consensus 209 -~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~---~~~aVvyEa~k~I~~l~~~~~~- 283 (355)
T 3tjz_B 209 -LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRN---KHEMVVYEAASAIVNLPGCSAK- 283 (355)
T ss_dssp -HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCC---SSHHHHHHHHHHHTC--------
T ss_pred -HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcC---CChHHHHHHHHHHHhccCCCHH-
Confidence 144555655554321 111233343333211100000112334566667766 6888999999998887552221
Q ss_pred HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC---cchhhhhhhhcCCcc
Q 009320 463 KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD---EDVDWEGVLDSGGLT 519 (537)
Q Consensus 463 ~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~---~~~d~~~v~~~g~~~ 519 (537)
.. ..++..|..++.+.++.+|=.|...|..+....|+. -..|.+.++..+..+
T Consensus 284 --~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~s 339 (355)
T 3tjz_B 284 --EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRS 339 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred --HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHh
Confidence 11 344667778888999999999999998888777665 233556666654443
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.53 E-value=0.0012 Score=65.60 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=119.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+++.+++.|.+.+......++..|+.+-..+.+.-..++..+++..|+++....+.+.+..++.+|.+|-.+...-..++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 45789999999999999999999999443555666667778889999999999999999999999999988877776666
Q ss_pred -hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhh--------c--CchHHHHHHhc---cCCHHHHHHHH
Q 009320 302 -RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGV--------L--GALQPLMHALR---AESERTRHDSA 366 (537)
Q Consensus 302 -~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~--------~--g~l~~Lv~lL~---~~~~~~~~~A~ 366 (537)
....|..|..++.+....+...|..+|..++...+ +...+.+ . --+..|+.+|. +++.+.+.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 46788899999998888899999999999886654 2222221 1 13789999997 56788888877
Q ss_pred HHHHHh
Q 009320 367 LALYHL 372 (537)
Q Consensus 367 ~aL~nL 372 (537)
..|-.+
T Consensus 279 tLIN~l 284 (339)
T 3dad_A 279 TLINKT 284 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 144
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.43 E-value=0.01 Score=67.71 Aligned_cols=254 Identities=13% Similarity=0.133 Sum_probs=171.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChH---HHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEE---LRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVL 299 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~ 299 (537)
+.|.+.+.+.... +.|+..+..++..... .-..+. +.+|.++..+.+....|+..|-.++..+.. -+.+...
T Consensus 57 ~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~ 132 (986)
T 2iw3_A 57 GELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK 132 (986)
T ss_dssp HHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred HHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666443333 7888888888854321 112222 467788887778888899888877776654 2333222
Q ss_pred HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh
Q 009320 300 IVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQ 376 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 376 (537)
..+|.|+..|... ....+..|..+|..|+... ..+++. ..++|.+.+.+.+..+++++.|..++..+|..-
T Consensus 133 ----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 133 ----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp ----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 3478999988765 5889999999999998654 344542 578999999999889999999999999988755
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcCh---hh-HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 377 SNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASN---EG-RSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 377 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~---~~-r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
+|+.. ...+|.|++.+.+++....++ ..|+... +- ...+. =.+|.|.+-|.. .+...+..++-+.
T Consensus 207 ~n~d~---~~~~~~~~~~~~~p~~~~~~~---~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~---~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 207 DNKDI---ERFIPSLIQCIADPTEVPETV---HLLGATTFVAEVTPATLS--IMVPLLSRGLNE---RETGIKRKSAVII 275 (986)
T ss_dssp CCTTT---GGGHHHHHHHHHCTTHHHHHH---HHHTTCCCCSCCCHHHHH--HHHHHHHHHHTS---SSHHHHHHHHHHH
T ss_pred CCcch---hhhHHHHHHHhcChhhhHHHH---HHhhcCeeEeeecchhHH--HHHHHHHhhhcc---CcchhheeeEEEE
Confidence 55421 468899999998776544444 4444321 11 11110 124666666665 5778889999999
Q ss_pred HHhhc--CChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhc
Q 009320 453 FALGH--GNLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 453 ~~L~~--~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~ 499 (537)
-|+|+ +++....-. -...+|-|..... ..+|++|+.|...+..|..
T Consensus 276 ~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 99998 454333333 2566777776644 4679999999999888854
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.36 E-value=0.0037 Score=62.16 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=116.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHH-hhcChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcChhhHHHHHh-CC
Q 009320 350 LMHALRAESERTRHDSALALYH-LTLIQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASNEGRSAILD-AN 425 (537)
Q Consensus 350 Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~~~~r~~i~~-~g 425 (537)
+++-|.+++.+.++.++.-|.. +.....-...++..+++..|+.++.++ +....++.+|.+|-...+|...+++ ..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3355666777888888888887 666788899999999999999999754 3667799999999999999988875 34
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--------C--CcHHHHHHHHH---hCCHHHHHHHHH
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE--------A--RAAEVLREVEE---RGSQRAKEKAKR 492 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~--------~--g~i~~L~~ll~---~~s~~~k~~A~~ 492 (537)
.|..+..++.+ ....+...|+.+|..+|..++....++.+ . .-.+.|+.++. +++..++.+|..
T Consensus 203 fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 203 TIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 58888888886 78999999999999999866433222221 1 13778999987 789999999999
Q ss_pred HH-HHhhcC
Q 009320 493 IL-EMLKGR 500 (537)
Q Consensus 493 lL-~~L~~~ 500 (537)
++ +.|...
T Consensus 280 LIN~lL~~a 288 (339)
T 3dad_A 280 LINKTLAAL 288 (339)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 99 555554
No 146
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0048 Score=59.42 Aligned_cols=191 Identities=8% Similarity=0.012 Sum_probs=126.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-cccC-cchhhHHhh-cCchHHHHHHh-ccCCHHHHHHHHHHHHHhhcChh-hHHH-H
Q 009320 309 LIDVLKSGSEESQEHAAGALFS-LALE-DENKMAIGV-LGALQPLMHAL-RAESERTRHDSALALYHLTLIQS-NRVK-L 382 (537)
Q Consensus 309 Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~k~~I~~-~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~-n~~~-i 382 (537)
+...+.+.+...|..|+..|.. +... ........+ ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456778889999999999988 7633 111100112 24577888888 67788999999999999984221 1111 1
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHH--hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAIL--DANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~--~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.-.-+++.+++.+.+.. +++.+..+|..++..-+- .... -...++.|...|.+ ..+.+++.++.+|..++..
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~---k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKH---KTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHH
Confidence 22337889999998764 455566667666552110 0000 01245677788876 6889999999999999874
Q ss_pred ChHH-HHHHH--HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 459 NLRF-KGLAK--EARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 459 ~~~~-~~~i~--~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
.... ..... ....++.|.+++.+.++.+|..|..+|..+...-.+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 3211 12111 257889999999999999999999999887755333
No 147
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.12 Score=46.90 Aligned_cols=209 Identities=16% Similarity=0.219 Sum_probs=143.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV-VSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.++..|+.+-+.+|..|+..|..+++.-++....+ +..|+.++ .+....+......+++.++.. +..++
T Consensus 34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe~v 105 (253)
T 2db0_A 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPELV 105 (253)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHHHH
T ss_pred HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHHHH
Confidence 4789999999999999999999999998776654432 44555565 456677777788888888862 12222
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
+ +.||.|..=+.-|++.++.+...+|..++.....- -.+++..+..++.+.+..-+..|+..+..| .+|..+
T Consensus 106 ~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~al---Gen~~~ 177 (253)
T 2db0_A 106 K-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAM---GENSFK 177 (253)
T ss_dssp H-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTC---CTTTHH
T ss_pred H-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHH---hccCcc
Confidence 2 34677777778899999999999999887543311 134567788899988866666666555444 455544
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-+. -.+|.|..+|.+++ ++..++.+|.+++... .-|..+. ..++-+.+ .+..++......|..|..
T Consensus 178 yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D---~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 178 YVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND---TSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCC---SCHHHHHHHHHHHHHHHH
T ss_pred ccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcC---cHHHHHHHHHHHHHHHHH
Confidence 443 47889999998877 4455899999998854 3343332 33334444 577777776666666553
No 148
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.15 E-value=0.00057 Score=58.81 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|++.++.++..|++.|..+.. ..+++.|+.+|.++++.++..|+.+|.++..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 5678999999999999999999888752 1358999999999999999999999998862
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHc
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSL 331 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~L 331 (537)
...++.|+.+|.+.+..++..|+.+|..+
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 23578999999988999999999988653
No 149
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.15 Score=46.24 Aligned_cols=212 Identities=18% Similarity=0.158 Sum_probs=143.8
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhh
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKM 339 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~ 339 (537)
..++..++.+|.++-..+|.+|+.+|.+++.. ++....+ +..|+.+++ +....+....+.++..++....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 34578889999988899999999999999984 4444444 345666655 4556776667788877764322
Q ss_pred HHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCchHHH--HHHHHHHHhcChh
Q 009320 340 AIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGESTSR--VLLILCNLAASNE 416 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~--al~~L~nLa~~~~ 416 (537)
.+. .+.+|.|..-.+-++++++.+-..+|-.+.. +++.- .+++.-+..++.+.+..++ ++..|. .-.+
T Consensus 103 e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~---alGe 173 (253)
T 2db0_A 103 ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIE---AMGE 173 (253)
T ss_dssp HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCT
T ss_pred HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHH---HHhc
Confidence 111 2345556666666799999999999988765 44333 2455567777887764444 444443 3222
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
+.-.-+ .-.++.|..+|.+ ++.-++..|+.+|.+|+..++..+.++. ..++=+.+.++-++.+....|..
T Consensus 174 n~~~yv-~PfLprL~aLL~D---~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 174 NSFKYV-NPFLPRIINLLHD---GDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTHHHH-GGGHHHHHGGGGC---SSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cCcccc-CcchHHHHHHHcC---cchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 322222 2457888889987 8999999999999999998887776654 23333557788888888888866
Q ss_pred hhcC
Q 009320 497 LKGR 500 (537)
Q Consensus 497 L~~~ 500 (537)
+.-.
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6543
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.11 E-value=0.013 Score=61.02 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=146.3
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCC--hHHHHHHHHcc---------------C--CHHHHHHHHH
Q 009320 226 LSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPN--LLSALRNLVVS---------------R--YSIVQTNAVA 285 (537)
Q Consensus 226 Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~s---------------~--~~~v~~~a~~ 285 (537)
+++.|.+ .+.+.+.-++.+|..|.+ .+..|..+.+.+ .++.++.++.. + ...++-+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4455544 345556678999999986 468888886544 46777654431 1 2467889999
Q ss_pred HHHHhcCCCccHHHHHhcCCH--HHHHHHHccCC-HHHHHHHHHHHHHcccCcc--hhh----HHhhcCchHHHHHHhcc
Q 009320 286 SLVNLSLEKKNKVLIVRSGFV--PLLIDVLKSGS-EESQEHAAGALFSLALEDE--NKM----AIGVLGALQPLMHALRA 356 (537)
Q Consensus 286 ~L~nLs~~~~~k~~i~~~g~v--~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~--~k~----~I~~~g~l~~Lv~lL~~ 356 (537)
++.-|+.+++....+...+.. +.|+.+++... ..+..-+..+|.||..... .+. .+...++ ..++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988777777766643 66777777544 6777788899999886541 122 1222334 556666665
Q ss_pred C---CHHHHHHHH-------HHHHHhhc---------------C---------hhhHHHHHhc--CcHHHHHHHhcCC--
Q 009320 357 E---SERTRHDSA-------LALYHLTL---------------I---------QSNRVKLVKL--NAVATLLTMVKSG-- 398 (537)
Q Consensus 357 ~---~~~~~~~A~-------~aL~nLs~---------------~---------~~n~~~iv~~--g~v~~Lv~lL~~~-- 398 (537)
. ++++...-- ..+..|++ . .+|..++-+. .++..|+++|.+.
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 3 444332211 11122331 1 2344444432 3788999999631
Q ss_pred --------c--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 399 --------E--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 399 --------~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+ ...-|+.=|..++. .|+||..+-+-|+=..++++|.+ .+++++..|+.++..+..
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h---~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH---SDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC---SSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 1 11224555556665 77899988888988999999988 799999999999887654
No 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.08 E-value=0.074 Score=60.16 Aligned_cols=202 Identities=16% Similarity=0.112 Sum_probs=132.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
+++.|..++.+++..+...|+-+|..+-....|... +..|+..+ ...+..++..++..|..+.. +
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~e~~~e~vrR~aalgLGll~~--------g 538 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQETQHGNITRGLAVGLALINY--------G 538 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------T
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHhccCcHHHHHHHHHHHHhhhC--------C
Confidence 478888888877776666676677766444434332 34555544 34467788888888876632 3
Q ss_pred hcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcC-C--chHHHHHHHHHHHhcChhhH
Q 009320 343 VLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKS-G--ESTSRVLLILCNLAASNEGR 418 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~--~~~~~al~~L~nLa~~~~~r 418 (537)
+...++.+++.|.. .++-++..++.++.--.....|. .+|+.|++.+.+ . .++..|+..|..+....
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--- 609 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--- 609 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---
Confidence 44577888888875 46667766666654332222222 256667766642 2 24555777776655433
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
...++.++++|.. ..++.+|..|..+|..+|.++.. . .++..|..+..+.+..+++.|...|.++-
T Consensus 610 -----~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 -----YTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-Q------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp -----CSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-H------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-H------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 2457788886655 26899999999999999986642 1 23457777888889999999988887776
Q ss_pred cCCC
Q 009320 499 GRED 502 (537)
Q Consensus 499 ~~~~ 502 (537)
....
T Consensus 676 ~gtn 679 (963)
T 4ady_A 676 IQQT 679 (963)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 5443
No 152
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.0012 Score=50.88 Aligned_cols=48 Identities=10% Similarity=-0.052 Sum_probs=38.5
Q ss_pred ccccccccccccCCeec-CCCccccHHHHHHHHHcC-CCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELG-FLPDLENGFKPDF 75 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~~ 75 (537)
.-.|.||.+++..=+.- .|||.|=..||.+||+.. ...||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45799999999743332 799999999999999764 3689999987654
No 153
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.62 E-value=0.0027 Score=46.87 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=40.8
Q ss_pred CccccccccccccCCeecCCCc-----cccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQ-----TFDRVSVQVCREL-GFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~-~~~~cp~~~~~~~~ 75 (537)
+.-.|.||++-..+|.+.||.+ -|=+.||.+|+.. ++..||.|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4567999999888999999753 7999999999975 56689999987753
No 154
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.54 E-value=0.017 Score=60.86 Aligned_cols=238 Identities=16% Similarity=0.103 Sum_probs=154.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH---c--------cC--CHHHHHHHHHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV---V--------SR--YSIVQTNAVASLVN 289 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~--------s~--~~~v~~~a~~~L~n 289 (537)
.+.|+..|-+..++.|.-|+-.|+.+.+.....-........ ...++++ . ++ -.-|++.++.+|..
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 477888888999999999999999987654321111111111 3333333 1 11 23689999999988
Q ss_pred hcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHH
Q 009320 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALA 368 (537)
Q Consensus 290 Ls~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~a 368 (537)
+ .+-... ..++..|+..+.....+++..+.-.|..+ +..+. -.++++.++.-|.+.++.++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 642221 34555666666777899999999999988 12221 24678888888999999999999999
Q ss_pred HHHhhcChhhHHHHHhcCcHHHHHHHhcC-C---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHH
Q 009320 369 LYHLTLIQSNRVKLVKLNAVATLLTMVKS-G---ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEAT 444 (537)
Q Consensus 369 L~nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~ 444 (537)
|.-++ .++... .++..|-+.|.+ + ......+..|..|+..+.. .-.+...|+.|-..|+. .-..+
T Consensus 323 LiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRH---tITSV 391 (800)
T 3oc3_A 323 LCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTS---PVPEV 391 (800)
T ss_dssp HTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTC---SSHHH
T ss_pred hhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcC---CcHHH
Confidence 99887 211111 122333333432 1 1355577888888876631 11123568889999988 78899
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCcHHHHH-HHHHhCCHHHHHHHHHHHH
Q 009320 445 RENCVAALFALGHGNLRFKGLAKEARAAEVLR-EVEERGSQRAKEKAKRILE 495 (537)
Q Consensus 445 ~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~-~ll~~~s~~~k~~A~~lL~ 495 (537)
|..++.+|..+. .. .++..+. .++-..++.+++.+..+.+
T Consensus 392 R~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999988877 11 1223333 3577788888888888775
No 155
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.39 E-value=0.027 Score=57.03 Aligned_cols=237 Identities=15% Similarity=0.101 Sum_probs=120.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
-.|.+.+.+.++..+-.|+++|.++...+ .-. .+.+.+.+.+.+.++-|+..|+-+...|.... .. +++
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe-~v~- 175 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQITDST--MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FD-VVK- 175 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HH-HHH-
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HH-HHH-
Confidence 45788888999999999999999987432 111 23566777888999999999999988887533 22 333
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC---CHHHHHHHHHHHHHhhcChhhHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE---SERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
++++.+-.++.+.++-++.+|..+|..+...+. .++..|+..+..+ ++-....-+..+..+...++.
T Consensus 176 ~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~-- 245 (355)
T 3tjz_B 176 RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG-- 245 (355)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch--
Confidence 688999999999999999999999999876431 1345556666553 344444444444333322100
Q ss_pred HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 381 KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
-.....++.+...|+..+ +.-.|+.+|..+...+.. .. ..++..|..+|.+ .++.++-.|+..|..+...
T Consensus 246 -~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss---~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 246 -SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSS---PKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHS---SSSSSHHHHHHCC------
T ss_pred -hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHH
Confidence 012334455555565433 445577777766542211 11 3445667777776 6778898899888888875
Q ss_pred ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHH
Q 009320 459 NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494 (537)
Q Consensus 459 ~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL 494 (537)
.+...+ ..-.-+..++.+++..+...|...|
T Consensus 318 ~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 318 HPSAVT-----ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------------------------------------
T ss_pred CcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 443221 1233566677777766666555444
No 156
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.30 E-value=0.0015 Score=53.65 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=29.3
Q ss_pred Cccccccccc-cccCCee--cCCCccccHHHHHHHH
Q 009320 27 KEFLCPVSGS-LMFDPVV--VSTGQTFDRVSVQVCR 59 (537)
Q Consensus 27 ~~~~CpI~~~-~m~dPV~--~~~G~ty~r~~i~~~~ 59 (537)
+++.|+||.+ .+.+||+ +.|||+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 5689999996 5899999 9999999999999843
No 157
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.17 E-value=0.0038 Score=50.33 Aligned_cols=46 Identities=9% Similarity=-0.098 Sum_probs=37.6
Q ss_pred ccccccccccCCe-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPV-VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 30 ~CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.|++|.-.+..=. ++||+|.||-.|+..|.+++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777776655433 689999999999999999888899999988754
No 158
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.14 E-value=0.34 Score=55.29 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=144.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.++..+......++..|...+..+.+.-+..-. ..++|.|+..+.+. ....+..|+.+|..|+..- ..++.
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~ 170 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVA 170 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHH
Confidence 35566666666677887777777766643222211 34588888888654 5788999999999998633 33443
Q ss_pred h--cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhH
Q 009320 302 R--SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 302 ~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
. ...||.+...+-...++++..|..++..++..-+|+.. ...+|.|++.+.+++. .-.+...|..-++..+--
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCC
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeec
Confidence 2 56788888888888899999999999998876666544 3578999999998643 444455554433322211
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHH---HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSA---ILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~---i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
.... +=.+|.|.+-|.+.. ...+++-++.|||.--+.-.. +. ...+|.|-+.... ..++++|+.|-.++..
T Consensus 246 ~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~--~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 246 PATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFAT--IADPEAREVTLRALKT 321 (986)
T ss_dssp HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTT--CCSHHHHHHHHHHHHH
T ss_pred chhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhc--cCCHHHHHHHHHHHHH
Confidence 1111 114566666676554 456699999999985543333 33 3445555555554 3689999999888888
Q ss_pred hhc
Q 009320 455 LGH 457 (537)
Q Consensus 455 L~~ 457 (537)
|-.
T Consensus 322 l~~ 324 (986)
T 2iw3_A 322 LRR 324 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 843
No 159
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.02 E-value=0.61 Score=52.80 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=152.0
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCC--------HHHHHHHHHHHHHhc
Q 009320 223 EEELSKKLR---SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRY--------SIVQTNAVASLVNLS 291 (537)
Q Consensus 223 ~~~Lv~~L~---s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~--------~~v~~~a~~~L~nLs 291 (537)
+..|-+.|. ++++..+.-|+..|..+.....+ .++..|...|.+++ +.++..|+..|....
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 444555554 56677777777777766543221 14777888776554 567777777777655
Q ss_pred CCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-CCHHHHHHHHHHHH
Q 009320 292 LEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-ESERTRHDSALALY 370 (537)
Q Consensus 292 ~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~ 370 (537)
....+. . +++.|..+|...+..+++.|+-+|..+-....+ ..++..|+..+.+ .+..+++.++.+|.
T Consensus 466 ~GS~~e-e-----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 466 MGSANI-E-----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp TTCCCH-H-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCCCH-H-----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 433222 2 356778888877777777777777655322222 2345666666544 46778888888876
Q ss_pred HhhcChhhHHHHHhcCcHHHHHHHhcC-Cc-hHHH-HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHH
Q 009320 371 HLTLIQSNRVKLVKLNAVATLLTMVKS-GE-STSR-VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~~-~~~~-al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
.+... +...++.+++.|.. .+ .... ++.++. ++....| +..+|+.|+..+.. ..++.++..
T Consensus 534 ll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~alg-lAyaGTG-----n~~aIq~LL~~~~~--d~~d~VRra 597 (963)
T 4ady_A 534 LINYG--------RQELADDLITKMLASDESLLRYGGAFTIA-LAYAGTG-----NNSAVKRLLHVAVS--DSNDDVRRA 597 (963)
T ss_dssp HHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHHH-HHTTTSC-----CHHHHHHHHHHHHH--CSCHHHHHH
T ss_pred hhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcCCC-----CHHHHHHHHHHhcc--CCcHHHHHH
Confidence 65432 23466777777752 33 2222 333332 2221111 12335667776665 257889999
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCcHHHHHH-HHHhCCHHHHHHHHHHHHHhhcCCCCC--------------cchhhhhh
Q 009320 448 CVAALFALGHGNLRFKGLAKEARAAEVLRE-VEERGSQRAKEKAKRILEMLKGREDDD--------------EDVDWEGV 512 (537)
Q Consensus 448 A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~-ll~~~s~~~k~~A~~lL~~L~~~~~e~--------------~~~d~~~v 512 (537)
|+.+|..+..+++ ..++.++. +++++++.+|..|..+|-.+....+.. ..+-..++
T Consensus 598 AViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 598 AVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp HHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHH
Confidence 9999998877653 23455555 466788999999998888887654432 22223566
Q ss_pred hhcCCccc
Q 009320 513 LDSGGLTR 520 (537)
Q Consensus 513 ~~~g~~~~ 520 (537)
+..|.+|.
T Consensus 669 ~ALG~Ig~ 676 (963)
T 4ady_A 669 IALSMILI 676 (963)
T ss_dssp HHHHHHST
T ss_pred HHHHHHhc
Confidence 67666663
No 160
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.90 E-value=0.073 Score=61.21 Aligned_cols=254 Identities=10% Similarity=0.050 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhcCCCccHHHHHhc-----C
Q 009320 236 ALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV------SRYSIVQTNAVASLVNLSLEKKNKVLIVRS-----G 304 (537)
Q Consensus 236 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~-----g 304 (537)
..+..|...|..++....+ .+ -.-+++.+...+. +.+...++.|+.++..++..-.....-+.. .
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcch---hH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 4566777788888754331 11 1112344444454 456678889999999887421100000000 1
Q ss_pred CHH----HHHHHHccC---CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh
Q 009320 305 FVP----LLIDVLKSG---SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 305 ~v~----~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 377 (537)
..+ .++..|.+. ++-+|..|+++|..++..-. +.. -..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 223334555 78899999999999986421 111 23467888888888789999999999999886421
Q ss_pred ---------hHHHHHh--cCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhcc
Q 009320 378 ---------NRVKLVK--LNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILVGMLRES 437 (537)
Q Consensus 378 ---------n~~~iv~--~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~ 437 (537)
.+..+.. ..+++.|+.++.... ..+.++.+|..++... +....+. ..++.|+..+...
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHH
Confidence 2222322 346666667776541 2244556665554311 1111111 2234455544331
Q ss_pred --CCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 438 --GSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 438 --~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
...+...+..++.+|..++.. ++..... ....+++.+..++........+.+..++..+..
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 224667777788888888774 3222222 234567788888777666667777777655543
No 161
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.69 E-value=0.0015 Score=64.69 Aligned_cols=47 Identities=17% Similarity=0.076 Sum_probs=37.9
Q ss_pred ccccccccccccC----Cee----cCCCccccHHHHHHHHHcC----------CCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFD----PVV----VSTGQTFDRVSVQVCRELG----------FLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~d----PV~----~~~G~ty~r~~i~~~~~~~----------~~~cp~~~~~~~ 74 (537)
...|+||...+.+ |-. ..|||.|-..||.+|++.. .+.||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4569999999998 533 3799999999999999752 136999998764
No 162
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.23 Score=48.02 Aligned_cols=182 Identities=14% Similarity=0.165 Sum_probs=113.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHH---Hhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--C-c-cH
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRV---SICT-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--K-K-NK 297 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~---~i~~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~-~-~k 297 (537)
|-+.|.+.++..|..|+..|..+......... .+.. ...++.+-..+.+.+..++..++.+|..+... . . ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 56788999999999999999887654322111 1111 23456667788889999999999999877642 1 1 12
Q ss_pred HHH--HhcCCHHHHHHH-HccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 298 VLI--VRSGFVPLLIDV-LKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 298 ~~i--~~~g~v~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
... .-...++.|+.- |.++...++..+..+|..+........ .+++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 221 223567778764 777888899888888877654332211 134566677788899999998888877543
Q ss_pred C--hh--hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 375 I--QS--NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 375 ~--~~--n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
. .. +....+ ..+++.+..+|.+.+ ++..|..++..+-.
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1 11 111111 124445566676554 56667777766644
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0085 Score=60.21 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=52.1
Q ss_pred ccccccccccccCCee-cCCCcc--ccHHHHHHHHHc-CCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 009320 28 EFLCPVSGSLMFDPVV-VSTGQT--FDRVSVQVCREL-GFLPDLENGFKPDFSTVIPNLAMKQTIL 89 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~-~~~G~t--y~r~~i~~~~~~-~~~~cp~~~~~~~~~~l~pn~~l~~~i~ 89 (537)
.+.|||++..|+.||- ..|-|. ||...+.+...+ +.-.||+|++.+...+|....-+..+++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 5899999999999995 689997 999998876554 3447999999999999999987777654
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.27 E-value=0.26 Score=48.60 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=95.8
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhc--CcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh---hHHHH
Q 009320 350 LMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKL--NAVATLLTMVKSGE--STSRVLLILCNLAASNE---GRSAI 421 (537)
Q Consensus 350 Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~--g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~---~r~~i 421 (537)
+...+.. ..+..+..++.++.|+-.++..+..+.+. .++..+...+.+.+ .+..+..++.|++.... ..+..
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~ 231 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK 231 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH
Confidence 3344433 35667888999999999998888877752 34555554444332 44457788888876321 00110
Q ss_pred HhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHh
Q 009320 422 LDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEML 497 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L 497 (537)
...+..+..++.. ..+.++.-.++.+|.+|...+....++++..|+...+-.+... ..+++.+.|..+|..|
T Consensus 232 --~~ll~~l~~il~~--~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 232 --AQCLSLISTILEV--VQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp --HHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 1133455556654 3588899999999999998877788888888877766666554 5688889988888654
No 165
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.69 E-value=0.023 Score=56.98 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=53.5
Q ss_pred CccccccccccccCCee-cCCCcc--ccHHHHHHHHHcC-CCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 009320 27 KEFLCPVSGSLMFDPVV-VSTGQT--FDRVSVQVCRELG-FLPDLENGFKPDFSTVIPNLAMKQTILN 90 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~-~~~G~t--y~r~~i~~~~~~~-~~~cp~~~~~~~~~~l~pn~~l~~~i~~ 90 (537)
-.+.|||+...|+.||- ..|-|. ||...+.+...+. .-.||+|++.....+|..+.-+.+++..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 36899999999999995 689988 9999998866553 3479999999999899998877777653
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.66 Score=44.71 Aligned_cols=182 Identities=8% Similarity=0.066 Sum_probs=114.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccCcc---hhhHHh-h-cCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh------h
Q 009320 309 LIDVLKSGSEESQEHAAGALFSLALEDE---NKMAIG-V-LGALQPLMHALRAESERTRHDSALALYHLTLIQ------S 377 (537)
Q Consensus 309 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~k~~I~-~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~------~ 377 (537)
|-.-|.+.+...|..|...|..+..... ...... . ....+.+-..+.+.+..+...++.+|..+...- .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5677888899999999988877543321 111111 1 234555667788888999999999888776421 1
Q ss_pred hHHHHHhcCcHHHHHHH-hcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 378 NRVKLVKLNAVATLLTM-VKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~l-L~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
......-..+++.|++- |.+.. ....++.+|..++........ .++.++..+.. .++.++..++..|..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~---Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK---KLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC---SCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc---cCHHHHHHHHHHHHH
Confidence 12222335678888875 66654 455677777666543211111 13455566666 789999999999988
Q ss_pred hhc--CChH--HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 455 LGH--GNLR--FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 455 L~~--~~~~--~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.. +... ....+ ..+++.+..++.+.++.+|..|..++-.+-.+
T Consensus 166 ~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 765 2211 12121 13455677888999999999999998666544
No 167
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.17 E-value=1.4 Score=41.97 Aligned_cols=140 Identities=21% Similarity=0.181 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhh-cChhhHHHHHh-cCcHHHHHHHh-------cCCc-------hHHHHHHHHHHHhcChhhHHHHHh
Q 009320 360 RTRHDSALALYHLT-LIQSNRVKLVK-LNAVATLLTMV-------KSGE-------STSRVLLILCNLAASNEGRSAILD 423 (537)
Q Consensus 360 ~~~~~A~~aL~nLs-~~~~n~~~iv~-~g~v~~Lv~lL-------~~~~-------~~~~al~~L~nLa~~~~~r~~i~~ 423 (537)
+.++.|+.-|..=- ..++-...+.. -|.+..|++=+ ..+. ....|++.|-.+|++++.|..+.+
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~ 95 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA 95 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence 34555544333211 12333444443 68888887633 1111 245588889999999999999999
Q ss_pred CCcHHHHHHHHhccCCC--CHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 424 ANGVSILVGMLRESGSD--SEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 424 ~g~I~~Lv~lL~~~~~~--~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
++..-.|-.+|...... -+..+-.+++++..|.. ++.++...+.+.++++..++.++.|++-.|..|..+++.+-.
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 99888888888762111 25678889999999998 455677777788999999999999999999999999965543
No 168
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.68 E-value=1.6 Score=42.10 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=112.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHH----HccCCHHHHHHHHHHHHHhcC---CC--
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNL----VVSRYSIVQTNAVASLVNLSL---EK-- 294 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l----L~s~~~~v~~~a~~~L~nLs~---~~-- 294 (537)
+.+...|-+.+...+..|+..|......+++ ..+. .++.+++. +.+.+..+...++.+|..+.. ..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567777788999999999988877644332 2221 13334433 247788888888888776532 11
Q ss_pred ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 295 KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 295 ~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
.....-+ .-.+|.|+.-+......+|+.+-.+|..+... .....+++.+++-+++.+.+.+..++..|.++-.
T Consensus 124 ~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 1111111 23679999999888889999998888776422 1123467778888888899999999888877643
Q ss_pred ChhhHHHHHhcCcH---HHHHHHhcCCc--hHHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAV---ATLLTMVKSGE--STSRVLLILCNL 411 (537)
Q Consensus 375 ~~~n~~~iv~~g~v---~~Lv~lL~~~~--~~~~al~~L~nL 411 (537)
..... ...++ +.+..++.+.+ +++.|+.++..+
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 21111 23467 88889998765 566677776654
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.20 E-value=1.7 Score=42.80 Aligned_cols=185 Identities=12% Similarity=0.051 Sum_probs=104.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHH----HHHc-cCCHHHHHHHHHHHHHcccCcchhh
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLI----DVLK-SGSEESQEHAAGALFSLALEDENKM 339 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv----~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~ 339 (537)
+..|.+++ .-..+.+--++.+|.-+..++.....+.+...-..++ ..+. .+.+..+..+++++.|+-....++.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 56666665 4344445556666666665555444554432223333 3332 2346678899999999998888887
Q ss_pred HHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH-HhcCcHHHHHHHhc---CCchHHHHHHHHHHHhc
Q 009320 340 AIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL-VKLNAVATLLTMVK---SGESTSRVLLILCNLAA 413 (537)
Q Consensus 340 ~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i-v~~g~v~~Lv~lL~---~~~~~~~al~~L~nLa~ 413 (537)
.+.. ..+++.+...+...+..++..++.+++|++..-...... ....++..+..++. +.+..-+++.+|.+|..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 7764 245555565655567889999999999998631100000 01113444444454 23355668888888887
Q ss_pred ChhhHHHHHh-CCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 414 SNEGRSAILD-ANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 414 ~~~~r~~i~~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
.+.....+.+ -+....+-++... +...++.+.|-.+|
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~~~--~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYSSV--SEPAKVSECCRFIL 301 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGGGC--CSSHHHHHHHHHHH
T ss_pred CChhHHHHHHHcCHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 5543333333 3333333334433 24566666654443
No 170
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.96 E-value=2.9 Score=43.43 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=90.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+..++.. ..++..++..|+..|..+.+.-++.... ++..++++..+.+..++..|+..|-.++.+ ++...++
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia- 102 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA- 102 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-
Confidence 3455543 5678999999999999999888776554 589999999999999999999999999998 6655554
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALAL 369 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 369 (537)
..|+++|...+.......-.+|..|-..+. .+.+..|...+..+++.++..++.-|
T Consensus 103 ----DvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 103 ----DILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp ----HHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ----HHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 588999998876665666566655533322 23344444444445555555555544
No 171
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.87 E-value=5.8 Score=45.27 Aligned_cols=215 Identities=11% Similarity=0.089 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhcC-----ChHHHHH----HHHccC---CHHHHHHHHHHHHHhcCCCccHHH
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICTP-----NLLSALR----NLVVSR---YSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv----~lL~s~---~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+.++..++.|+..+..++........ -... .+.+.+. ..|.+. ++-++..|+++|..++..- ....
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH
Confidence 56778888899999988743211100 0011 3444443 334555 8899999999999998632 2222
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc---------hhhHHhh--cCchHHHHHHhccCC--H-H--HHH
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE---------NKMAIGV--LGALQPLMHALRAES--E-R--TRH 363 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~k~~I~~--~g~l~~Lv~lL~~~~--~-~--~~~ 363 (537)
+ ...++.++..|.+.+..++..|+.+|.+++...+ .+..+.. ...+..|+.++.... + . ...
T Consensus 494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 2 2457788888888889999999999999886422 2344442 456777778887641 1 1 223
Q ss_pred HHHHHHHHhhcC--hhhHHHHHhcCcHHHHHHHhc----CCc---hHHHHHHHHHHHhcC--hhhHHHHHhCCcHHHHHH
Q 009320 364 DSALALYHLTLI--QSNRVKLVKLNAVATLLTMVK----SGE---STSRVLLILCNLAAS--NEGRSAILDANGVSILVG 432 (537)
Q Consensus 364 ~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~----~~~---~~~~al~~L~nLa~~--~~~r~~i~~~g~I~~Lv~ 432 (537)
.+..+|..+... ++... . -..+++.|+..+. +.+ ....++.+|..++.. ++....+. ....+.+..
T Consensus 572 ~l~~al~~vv~~~~~~~~p-~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~ 648 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQP-L-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGG-G-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh-H-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHH
Confidence 455555554321 11111 1 1124455555442 222 233456666666553 22222222 344677777
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhh
Q 009320 433 MLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 433 lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
+|.. ......+.+..++..+.
T Consensus 649 iL~~---~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSE---DIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHT---TCTTTHHHHHHHHHHHH
T ss_pred HHHh---hhHhhHHHHHHHHHHHH
Confidence 7766 33334555555554443
No 172
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.43 E-value=1.9 Score=40.95 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHH
Q 009320 362 RHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILVG 432 (537)
Q Consensus 362 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~ 432 (537)
.-+|+..|..++++++.|..++++.+.-.|..+|.... .+-.+++++..|...+ +....+.+.+.|+..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 35667777789999999999999999888888886432 2233799999998643 55666788999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCC----------hHHHHHHHHCCcHHHHH-HHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 433 MLRESGSDSEATRENCVAALFALGHGN----------LRFKGLAKEARAAEVLR-EVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 433 lL~~~~~~~~~~~e~A~~~L~~L~~~~----------~~~~~~i~~~g~i~~L~-~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.|+. +++-.+..|..++..+-.++ +++..+. .++..++ .+..+.+++.-++..++--.|+++
T Consensus 153 ime~---GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~---~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 153 IMES---GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA---MILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHH---SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH---HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHhh---ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 9998 89999999998888776543 2222221 1222222 234566677666666555544443
No 173
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.51 E-value=2.5 Score=48.30 Aligned_cols=211 Identities=10% Similarity=0.060 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH---c--cCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCH
Q 009320 233 ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV---V--SRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFV 306 (537)
Q Consensus 233 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~--s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v 306 (537)
.++..++.|+..|..++..-.... ...++.++.++ . +.++.++..++.+|..++.. ..+...+. ..+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHH
Confidence 577888999999999885432211 23344444433 3 24889999999999988752 22221111 345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccC--CHHHHHHHHHHHHHhhcC--hhhHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAE--SERTRHDSALALYHLTLI--QSNRV 380 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~--~~n~~ 380 (537)
+.|+..| + +.++..|+.+|.+++.. .+..+.. ...+..|..++.++ +...+..+..++..+... .+...
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6666666 2 66889999999999843 3334442 45677777888774 467777777777776542 23333
Q ss_pred HHHhcCcHHHHHHHh----cCC--c--hHHHHHHHHHHHh---cChhh-----H------HH--HHhCCcHHHHHHHHhc
Q 009320 381 KLVKLNAVATLLTMV----KSG--E--STSRVLLILCNLA---ASNEG-----R------SA--ILDANGVSILVGMLRE 436 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL----~~~--~--~~~~al~~L~nLa---~~~~~-----r------~~--i~~~g~I~~Lv~lL~~ 436 (537)
..+. ..+++++..+ ... + ........|..|+ ..-.. . +. -.-....+.+..++..
T Consensus 624 ~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 3222 3445555433 222 1 1223333333332 21100 0 00 0113456777777765
Q ss_pred cCCCCHHHHHHHHHHHHHhhc
Q 009320 437 SGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~ 457 (537)
...+..+.+.++.++..++.
T Consensus 703 -~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 -WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp -TTTCHHHHHHHHHHHHHHHH
T ss_pred -ccccHHHHHHHHHHHHHHHH
Confidence 22477899999999998775
No 174
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.77 E-value=0.31 Score=46.27 Aligned_cols=48 Identities=10% Similarity=-0.061 Sum_probs=38.6
Q ss_pred ccccccccccccCCeecC-CCccccHHHHHHHHHcC-CCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-FLPDLENGFKPDF 75 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~~ 75 (537)
-..|.||.++-.-=+.-+ |++.|-+.|+.+|++.. ...||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 456999999988555554 89999999999999764 4579999987654
No 175
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.96 E-value=13 Score=37.52 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=106.2
Q ss_pred HHHHHHhcCCCHHH-HHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHc-----------cCCHHHHHHHHHHHHHh
Q 009320 224 EELSKKLRSADIAL-QEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVV-----------SRYSIVQTNAVASLVNL 290 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~-~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~-----------s~~~~v~~~a~~~L~nL 290 (537)
+..|..|.++.... ....+..|+.--+.++ ..-..+. .+|+..|+.+|. ..+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 45677776553222 2234455554334443 3333344 677888888884 12457788889999988
Q ss_pred cCCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--h-hhHHh----------hcCchHHHHHHhcc
Q 009320 291 SLEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--N-KMAIG----------VLGALQPLMHALRA 356 (537)
Q Consensus 291 s~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~I~----------~~g~l~~Lv~lL~~ 356 (537)
-.+......++. ...+..|+..|.+.++.++..+..+|..++.... + -..+. +..-+..++..|.+
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 876666666665 6789999999999999999999999988886553 2 22221 23457788888887
Q ss_pred C-CHHHHHHHHHHHHHhhcCh---h----hHHHHHhcCcHHHHHHHhc
Q 009320 357 E-SERTRHDSALALYHLTLIQ---S----NRVKLVKLNAVATLLTMVK 396 (537)
Q Consensus 357 ~-~~~~~~~A~~aL~nLs~~~---~----n~~~iv~~g~v~~Lv~lL~ 396 (537)
. +.+.+..++..+-.+.... + -|..+...|..+.+-. |.
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr 274 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LR 274 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HT
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hh
Confidence 4 4444444444333344332 2 2344556777666655 54
No 176
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=87.87 E-value=13 Score=34.77 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHHHHhcCCCHH-HHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc----C-------CHHHHHHHHHHHHHhc
Q 009320 225 ELSKKLRSADIA-LQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS----R-------YSIVQTNAVASLVNLS 291 (537)
Q Consensus 225 ~Lv~~L~s~~~~-~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s----~-------~~~v~~~a~~~L~nLs 291 (537)
..|+.|++.... ...+-+..|+..-+.++ ..-..+ ..+|+..|+..|.. + +...+..++.+|..+-
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 356666543221 11223344443333333 333333 46788888887742 1 3467788888998887
Q ss_pred CCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc
Q 009320 292 LEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE 336 (537)
Q Consensus 292 ~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~ 336 (537)
........+.. .+.+..|+..|.+.++.++..++.+|..++..++
T Consensus 83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 76666666665 6788999999988899999999999988886653
No 177
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.35 E-value=6 Score=44.93 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=96.6
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH---ccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV---VSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFV 306 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v 306 (537)
.+.++..++.++..|..++..-.. .+...++.++..+ .++++.++..++.+|..++.. ..+.. .. ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHH
Confidence 456788888899999988854321 1123455555544 335788999999999988752 22222 22 3678
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccC--CHHHHHHHHHHHHHhhcCh--hhHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAE--SERTRHDSALALYHLTLIQ--SNRV 380 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~--~n~~ 380 (537)
+.|+..|.+ +.++..|+.+|..++.. .+..+.. ...+..|..++.++ +...+.....++..+.... +...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888854 78999999999999843 2333331 34555666666653 4677777788888776432 3333
Q ss_pred HHHhcCcHHHHHHHh
Q 009320 381 KLVKLNAVATLLTMV 395 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL 395 (537)
..+ ...++++...+
T Consensus 608 ~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 608 KNL-HSLISPYIQQL 621 (963)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
Confidence 332 33555555544
No 178
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=86.74 E-value=47 Score=37.55 Aligned_cols=133 Identities=10% Similarity=-0.029 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh---c--cCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHH
Q 009320 316 GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL---R--AESERTRHDSALALYHLTLIQSNRVKLVKLNAVAT 390 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~ 390 (537)
.+...++.++.+|..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 456688889889988875432111 12334444433 3 2378899999999998875322111111 235666
Q ss_pred HHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 391 LLTMVKSGESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 391 Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
|+..|. ..+...|+.+|.++|. +.+..+.. ...+..+.+++... .-+...++.+..++..++.
T Consensus 551 l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~-~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 551 LVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTG-RMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHST-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHH
Confidence 666664 6688889999999994 23344331 23456666777651 1357888888888888876
No 179
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.51 E-value=0.74 Score=43.85 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=35.6
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHH
Q 009320 230 LRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLL 309 (537)
Q Consensus 230 L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~L 309 (537)
+.+.++.++..|+..| ....|..++.++++.|+..++..| . .+.|
T Consensus 59 l~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L 103 (244)
T 1lrv_A 59 LADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------REQL 103 (244)
T ss_dssp TTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGG
T ss_pred hcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHH
Confidence 3667777777766532 123355566677777777766532 1 1234
Q ss_pred HHHHccCCHHHHHHHHH
Q 009320 310 IDVLKSGSEESQEHAAG 326 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~ 326 (537)
..++...+..+|..++.
T Consensus 104 ~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 104 SALMFDEDREVRITVAD 120 (244)
T ss_dssp GGTTTCSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 55556666666666555
No 180
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=85.56 E-value=18 Score=35.80 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHH----Hhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRV----SIC-TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~----~i~-~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
+..|+..|..-+.+.+..+.....++.+.....+. .+. ...++..|+.-- +++++.-.+-..|.....++...
T Consensus 80 l~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 80 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhHHHH
Confidence 35677777788889999888888888876543322 222 234444444443 34455556666788888888888
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
..|...+.+..+.+....++-++..-|..++..|-.... ....+.. ...+...-.+|.+++--+++.++..|..|-
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 889888888999999999999998888888887644332 1122221 246677788999999999999999999999
Q ss_pred cChhhHHHHHh----cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh
Q 009320 374 LIQSNRVKLVK----LNAVATLLTMVKSGE--STSRVLLILCNLAASN 415 (537)
Q Consensus 374 ~~~~n~~~iv~----~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~ 415 (537)
....|-..|.+ ..-+..++.+|.+.. ++-.|.-+..-....|
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99888877765 458888889998765 5666777776665544
No 181
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=85.48 E-value=3.4 Score=39.72 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=90.3
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhh--c-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-cCCH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSIC--T-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR-SGFV 306 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~--~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~-~g~v 306 (537)
-+.+..+...++..|..+...-.+.-..+. + .-++|.|+.=+.+..+.++..+-.+|..+.. +.- ...+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~ 169 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMT 169 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHH
Confidence 367888888888888876421000000111 1 2357888888888888888888877766653 111 1245
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCch---HHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGAL---QPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l---~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
+.++.-+++.+...|+.++..|..+-...... ...++ +.+..++.+.+..++..|+.++..+-
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 66777788889999999998888875332211 23468 99999999999999999998887653
No 182
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=84.69 E-value=33 Score=39.19 Aligned_cols=216 Identities=10% Similarity=0.036 Sum_probs=118.8
Q ss_pred HHHHHH-Hhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC---CHHHHHHHHHHHHHhcC--CCc
Q 009320 223 EEELSK-KLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR---YSIVQTNAVASLVNLSL--EKK 295 (537)
Q Consensus 223 ~~~Lv~-~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~---~~~v~~~a~~~L~nLs~--~~~ 295 (537)
+...++ .+. +.+.+.+.+|-..|..+-+.. ++......+|..+ +..++-.|+.+|.+... .++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSS----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 455553 343 337888888988888876543 3455666666543 68899999888875543 344
Q ss_pred ----cHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCH-HHHHHHHHHH
Q 009320 296 ----NKVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESE-RTRHDSALAL 369 (537)
Q Consensus 296 ----~k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~-~~~~~A~~aL 369 (537)
.+..+.+ ..+..+...-. .+..-++...+.+|..+....-. -...+.++.|+.++..++. ......+.+|
T Consensus 78 ~~~~~~~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 78 SNLLELQMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp TSHHHHHHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 4433332 22333332100 13456777778888777533210 0235677888888876443 3334444455
Q ss_pred HHhhcC---------hh--hH-----HHHHhc---CcHHHHHHHhc------CCchHHHHHHHHHHHhcChhhHHHHHhC
Q 009320 370 YHLTLI---------QS--NR-----VKLVKL---NAVATLLTMVK------SGESTSRVLLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 370 ~nLs~~---------~~--n~-----~~iv~~---g~v~~Lv~lL~------~~~~~~~al~~L~nLa~~~~~r~~i~~~ 424 (537)
..++.. .+ .| ..|.+. .+++..+.+|. +.....+++.+|......-. -..+.+.
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~ 232 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNE 232 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcc
Confidence 433211 00 11 222211 11333334442 12244557777766655322 2344555
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 425 NGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 425 g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
+.++.+.++| .++..++.|+.+|..+...
T Consensus 233 ~ll~~l~~~L-----~~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 233 PCMNLLYSFL-----QIEELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHHHHHHHT-----TSHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHc-----CChHHHHHHHHHHHHHHHc
Confidence 6677777777 3578899999999998873
No 183
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.00 E-value=2.2 Score=33.27 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=37.5
Q ss_pred Cccccccccccc-----cCCee--cCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLM-----FDPVV--VSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m-----~dPV~--~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
..-.|.||++=. -||-+ -.|+...||.|.+-=.++++..||+|+.++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 446899998742 12322 27899999999998888899999999988763
No 184
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=82.98 E-value=24 Score=39.78 Aligned_cols=137 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh---ccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHH
Q 009320 314 KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL---RAESERTRHDSALALYHLTLIQSNRVKLVKLNAVAT 390 (537)
Q Consensus 314 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL---~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~ 390 (537)
...+...++.++.+|..++..-... ....++.++..+ .++++.++..++++|..++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 3456778888888998887543210 112344444444 22467888999999998875421111222 368888
Q ss_pred HHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 391 LLTMVKSGESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 391 Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
|+..|.+..++..|+.+|.++|.. .+..+.. ...+..|..++... .-+...++.+..++..++..
T Consensus 534 l~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 534 VLHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhc
Confidence 888887767888899999999852 2222221 12234455555541 13568888888888888763
No 185
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=82.33 E-value=1.8 Score=45.93 Aligned_cols=214 Identities=10% Similarity=0.067 Sum_probs=128.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhc--CCHHHHHHHHcc---C-------CHHHHHHHHHHHHH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRS--GFVPLLIDVLKS---G-------SEESQEHAAGALFS 330 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~--g~v~~Lv~lL~~---~-------~~e~~~~Aa~~L~~ 330 (537)
....|+.-|.++..+++..|+..|..+.. +.......... ...-.|+-+|.- + -..+||.++.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45667777788899999999999988765 22111000111 223333333321 1 15799999999998
Q ss_pred cccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHH
Q 009320 331 LALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLIL 408 (537)
Q Consensus 331 Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L 408 (537)
+ ..-+.. ..++..|+..+....=+++..++-.|..+.. -... =.++++.++..|.+.+ ++.-|+.+|
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVED--KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHHH--HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 8 432222 3456666655555566788888888888811 1000 2457778888887654 555577777
Q ss_pred HHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHH
Q 009320 409 CNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKE 488 (537)
Q Consensus 409 ~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~ 488 (537)
.-++ .++....+ +..+-+.|.+.+ +-.......+..|..||..+.. .......+|.|.-++.+.-..+|+
T Consensus 324 iPIA-~p~~l~~L-----L~iLWd~L~~LD-DLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 324 CHFP-ITDSLDLV-----LEKCWKNIESEE-LISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp TTSC-CSSTHHHH-----HHHHHHHHHTCC-SCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred hhhc-chhhHHHH-----HHHHHHHhhhhc-ccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHH
Confidence 7766 22222222 234444444311 1112244556777777775531 112347888999999999999999
Q ss_pred HHHHHHHHhh
Q 009320 489 KAKRILEMLK 498 (537)
Q Consensus 489 ~A~~lL~~L~ 498 (537)
.+..+|..+.
T Consensus 394 AVL~TL~tfL 403 (800)
T 3oc3_A 394 SILNMVKNLS 403 (800)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHHHHH
Confidence 9988886654
No 186
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=82.33 E-value=33 Score=34.59 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=100.5
Q ss_pred HHHHHHhcCCCHHHH-HHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHh
Q 009320 224 EELSKKLRSADIALQ-EEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS-----------RYSIVQTNAVASLVNL 290 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~-~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~a~~~L~nL 290 (537)
+..|+.|.+.....+ ..-+..|+..-+.++ ..-..+ ..+|+..|+.+|.. .+...+..++.+|..+
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 346777755432221 123344443334333 222333 35778888887741 1356788888999888
Q ss_pred cCCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--h-hhHHh----------hcCchHHHHHHhcc
Q 009320 291 SLEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--N-KMAIG----------VLGALQPLMHALRA 356 (537)
Q Consensus 291 s~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~I~----------~~g~l~~Lv~lL~~ 356 (537)
.........+.. .+.+..|+..|.+.++.++..++.+|..++.... + -..+. +..-+..||+.+.+
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 776666666664 6788999999988889999999988888886653 3 22221 23356678888875
Q ss_pred C-CHHHHHHHHHHHHH-hhcChh-------hHHHHHhcCcHHHHHH
Q 009320 357 E-SERTRHDSALALYH-LTLIQS-------NRVKLVKLNAVATLLT 393 (537)
Q Consensus 357 ~-~~~~~~~A~~aL~n-Ls~~~~-------n~~~iv~~g~v~~Lv~ 393 (537)
+ +.+.+.. ...+.| |....+ -|..+..+|..+.+-.
T Consensus 166 ~~~~e~~~a-~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~ 210 (386)
T 2bnx_A 166 GTSIALKVG-CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE 210 (386)
T ss_dssp TSCHHHHHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHH
Confidence 4 4444444 444444 443322 3455556776666544
No 187
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.61 E-value=23 Score=36.82 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHH
Q 009320 315 SGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLT 393 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~ 393 (537)
.|+...+..|+..|...-.. ++.. ..++.++++++.+.+..++..|...|..+|.. ++..+ ++..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 46788888888888765432 3222 24678899999999999999999999999987 55444 4567899
Q ss_pred HhcCCchHHH--HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 394 MVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 394 lL~~~~~~~~--al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
+|+..+..+. +-..|..|-..+ -.+.+..|..-+.. +++.+|+.++..|..=.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~---~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQ---GEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcc---cchHHHHHHHHHHHHHH
Confidence 9986654333 222222221100 12334455554444 56788888888876543
No 188
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=80.32 E-value=27 Score=32.50 Aligned_cols=123 Identities=17% Similarity=0.116 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--cc-HHHHHh--------
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KN-KVLIVR-------- 302 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~-k~~i~~-------- 302 (537)
+...+...+.+|+.+..........+.....+..|...|.++++.++..++.+|..++..+ ++ ...+.+
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 3456778899999998654445555667889999999999999999999999888887743 24 433332
Q ss_pred --cCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcc---hhhHHhh---cCchHHHHHHhcc
Q 009320 303 --SGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDE---NKMAIGV---LGALQPLMHALRA 356 (537)
Q Consensus 303 --~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~---~k~~I~~---~g~l~~Lv~lL~~ 356 (537)
......++..|.. .+.+.+..+...+-.+....+ .|..+.. .-++..+++-|+.
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~ 209 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELRE 209 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhc
Confidence 2456778888874 457777666666655544332 3444431 3345555555554
No 189
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=80.06 E-value=39 Score=31.60 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=90.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhcC--CCccHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRN-LVVSRYSIVQTNAVASLVNLSL--EKKNKV 298 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~v~~~a~~~L~nLs~--~~~~k~ 298 (537)
...+...| +++.-+++..|+..|..+ ... ...++.+.. +-..++-.|++.+..++..+.. +++.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 34566666 566678888888877766 211 224666666 4456788999999888887764 3321
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhc-CchHHHHHHhccCCHHHHHHHHHHHHHhhc-Ch
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVL-GALQPLMHALRAESERTRHDSALALYHLTL-IQ 376 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~-g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~ 376 (537)
.++.+...+.+++..+|..|...+.--+.....+ .+. -+++.|-.+..+.+.-+++..+++|..++. ++
T Consensus 140 ------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 5677888899999999998887775423221111 111 234444445555677889999999999986 44
Q ss_pred hhHHHHH
Q 009320 377 SNRVKLV 383 (537)
Q Consensus 377 ~n~~~iv 383 (537)
+-....+
T Consensus 211 d~V~~~~ 217 (240)
T 3l9t_A 211 DLVKIEL 217 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 190
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.72 E-value=7.3 Score=34.39 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=55.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHhhcC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L~~~ 500 (537)
+..|.+-|.. .++.++-.|+.+|-.+.. ++..+...+.....+..|+.++.. .++.+++++..+++.-...
T Consensus 54 ~ral~krl~~---~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 54 LKAIMKRVNH---KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4566666766 688999999999888887 466677777666788888888765 5789999999999777754
No 191
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=79.31 E-value=45 Score=33.56 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--cc-HHHHHh--------
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KN-KVLIVR-------- 302 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~-k~~i~~-------- 302 (537)
+...+...+++|+.+..........+.....|..|...|.+.++.++..++.+|..++..+ ++ ...+.+
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 3466788899999998654445555667889999999999999999999999998888743 33 333332
Q ss_pred --cCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCc---chhhHHhh---cCchHHHHHHhccC
Q 009320 303 --SGFVPLLIDVLKS-GSEESQEHAAGALFSLALED---ENKMAIGV---LGALQPLMHALRAE 357 (537)
Q Consensus 303 --~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~---~~k~~I~~---~g~l~~Lv~lL~~~ 357 (537)
......++..|.. .+.+.+..+...+-.+.... +.|..+.. .-++..++.-|+..
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~ 276 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI 276 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcC
Confidence 3567888998886 46777777666665554433 23444441 23444555556553
No 192
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.03 E-value=70 Score=36.58 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=120.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcC------CC
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSL------EK 294 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~------~~ 294 (537)
.+..++..+.+.+...+.+|-..|..+-+.. ++...+..+|. +.+..++..|+.+|.+... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 3455666665666677888888888775432 33445555553 5688899999999987653 22
Q ss_pred ccHHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHH
Q 009320 295 KNKVLIVRSGFVPLLIDVLKSG-----SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALAL 369 (537)
Q Consensus 295 ~~k~~i~~~g~v~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 369 (537)
+.+..+.+ ..+..+...-... +..++...+.++..++..+-. -...+.++.|+..+. .++..+..++.+|
T Consensus 87 ~~~~~ir~-~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 87 DHRIGIRN-FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHHHH-HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 33433332 2333333222111 255677777777777644211 013567888999886 4555666777777
Q ss_pred HHhhcC---------hhhH-----HHHHh--cCcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHH
Q 009320 370 YHLTLI---------QSNR-----VKLVK--LNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILDANGVSIL 430 (537)
Q Consensus 370 ~nLs~~---------~~n~-----~~iv~--~g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~L 430 (537)
..|+.. ...+ ..+.. ..++..+..++.+. .....++.++.+....-.. ..+.+...+..+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 766621 0111 11222 12333344444432 2455577777666543321 224445555655
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 431 VGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 431 v~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.+.+.. ++.++..|+.+|..+...
T Consensus 241 ~~~~l~----~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFMT----SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHHH----SHHHHHHHHHHHHHHHHC
T ss_pred HHHhCC----CHhHHHHHHHHHHHHHhC
Confidence 532222 567788888888777753
No 193
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=77.38 E-value=85 Score=36.02 Aligned_cols=216 Identities=11% Similarity=0.089 Sum_probs=126.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcC------C
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSL------E 293 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~------~ 293 (537)
+.++.++..+-+.+...+.+|-..|..+-+.. ++...+..+|. +.++.++..|+.+|.+... .
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 34677888775655667888888888776543 33444445553 5678999999998886653 2
Q ss_pred CccHHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHH
Q 009320 294 KKNKVLIVRSGFVPLLIDVLKSG-----SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALA 368 (537)
Q Consensus 294 ~~~k~~i~~~g~v~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~a 368 (537)
++.+.. ++...+..+......+ ..-++...+.+|..++..+-.. ...+.++.|+.++..+ +......+..
T Consensus 86 ~e~~~~-Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~~-~~~~~~~L~i 160 (1023)
T 4hat_C 86 NDHRIG-IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSSS-VNVCENNMIV 160 (1023)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTTC-HHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 223333 3333444444432211 2334455666666665332110 1356788888888653 4455666666
Q ss_pred HHHhhcC---------hhhHH-----HHHh--cCcHHHHHHHhcC---CchHHHHHHHHHHHhcChhhHHHHHhCCcHHH
Q 009320 369 LYHLTLI---------QSNRV-----KLVK--LNAVATLLTMVKS---GESTSRVLLILCNLAASNEGRSAILDANGVSI 429 (537)
Q Consensus 369 L~nLs~~---------~~n~~-----~iv~--~g~v~~Lv~lL~~---~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~ 429 (537)
|..|+.. ...|. .|.. ..++..+..+|.. ......++.+|......-. -..+.+.+.++.
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~ 239 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYETNILEL 239 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHH
Confidence 6655421 11222 2222 2244444445532 2355567788777766432 234566778888
Q ss_pred HH-HHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 430 LV-GMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 430 Lv-~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+. .+|. ++..++.|+.+|..+..
T Consensus 240 l~~~~L~-----~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 240 LSTKFMT-----SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHTHHHH-----SHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC-----CHHHHHHHHHHHHHHHc
Confidence 88 7774 57889999999999986
No 194
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=77.03 E-value=24 Score=34.30 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=88.6
Q ss_pred HHHHHHhcCC------CHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHH--ccCCHHHHHHHHHHHHHhcC-C
Q 009320 224 EELSKKLRSA------DIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLV--VSRYSIVQTNAVASLVNLSL-E 293 (537)
Q Consensus 224 ~~Lv~~L~s~------~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL--~s~~~~v~~~a~~~L~nLs~-~ 293 (537)
..+..+|+++ +......|+..|-.++++-...-..+. + ...|-.++ ...++.+++.|.++|...-. +
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e---f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE---FALLANLSLNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc---HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence 3455555665 556678899999999975443333333 3 34444433 34567899999999987666 4
Q ss_pred CccHHHHHh--cCCHHHHHHHHcc-------CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--CHHHH
Q 009320 294 KKNKVLIVR--SGFVPLLIDVLKS-------GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--SERTR 362 (537)
Q Consensus 294 ~~~k~~i~~--~g~v~~Lv~lL~~-------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~ 362 (537)
+.....+.+ ...+..++.-|.. ...-++..-+++|-.|..+.. .. ....+..|.+++... ++.++
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHH
Confidence 555555554 4666666654433 234456666788888877652 11 133556777777666 78888
Q ss_pred HHHHHHHHHh
Q 009320 363 HDSALALYHL 372 (537)
Q Consensus 363 ~~A~~aL~nL 372 (537)
..++..+..+
T Consensus 178 ~Kvl~li~d~ 187 (315)
T 3qml_C 178 IKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877766554
No 195
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=75.73 E-value=0.63 Score=29.69 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=13.2
Q ss_pred CccccccccccccCCe
Q 009320 27 KEFLCPVSGSLMFDPV 42 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV 42 (537)
+-|+||||+.-+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3599999999888774
No 196
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=73.37 E-value=8.3 Score=33.06 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=55.5
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+..|.+-|.. .++.++-.|+.+|-.+.. ++..+...+.....+..|+.++...++.+++++..++...+..
T Consensus 44 ~rai~Krl~~---~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 44 LRSIMRRVNH---KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4567777766 688999999988887776 4566666666666777888888888999999999999877654
No 197
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=73.10 E-value=2.9 Score=33.34 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=42.0
Q ss_pred CCCCCC-CccccccccccccCCeecCC--C----ccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 21 NPKQPP-KEFLCPVSGSLMFDPVVVST--G----QTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 21 ~~~~~p-~~~~CpI~~~~m~dPV~~~~--G----~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
..+.-| +.+.|||++++=..=|.+.- | -=||..++.+...+|. +-|.+|.++...
T Consensus 19 ~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~s 80 (102)
T 2kkx_A 19 ERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITAS 80 (102)
T ss_dssp TTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTT
T ss_pred hhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHh
Confidence 344444 47899999999999888733 2 3499999999888853 678899988763
No 198
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=72.91 E-value=1 Score=27.41 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.6
Q ss_pred CCccccccccccccCC
Q 009320 26 PKEFLCPVSGSLMFDP 41 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP 41 (537)
|..|.||+|+..|-||
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4578999999988887
No 199
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=71.71 E-value=64 Score=32.45 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--c-HHHHHh--------
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK--N-KVLIVR-------- 302 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~--~-k~~i~~-------- 302 (537)
+...+...+++|+.+..........+....++..|...|.+.++.++..++.+|..++..+. + ...+.+
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 34667789999999986544455556678899999999999999999999988888877432 3 333322
Q ss_pred --cCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcc---hhhHHhh---cCchHHHHHHhccC
Q 009320 303 --SGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDE---NKMAIGV---LGALQPLMHALRAE 357 (537)
Q Consensus 303 --~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~---~k~~I~~---~g~l~~Lv~lL~~~ 357 (537)
......||..|.. .+.+.+..+...+-.+....+ .|..+-. .-++..++.-|+..
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~ 214 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI 214 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhcc
Confidence 2466778888874 457777766666655544332 3444441 34455556666553
No 200
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=70.99 E-value=12 Score=32.92 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLS 291 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs 291 (537)
++.|.++|.+.++.++..|+..|-.+.+.. ......+.....+.-|++++.. .++.|+..++..|..-+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 467888899999999999999999998874 5566677778888888888865 57889998888876555
No 201
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=70.26 E-value=14 Score=42.60 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCH
Q 009320 233 ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-----RYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFV 306 (537)
Q Consensus 233 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v 306 (537)
.++..++.++.++..++..-......-.-..+++.|+.++.. ....++..++.+|...+. ...+...+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 579999999999999986533221211223457777777653 223345566678876654 11121111 1234
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh------cCchHHHHH----HhccCCHHHHHHHHHHHHHhhc
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV------LGALQPLMH----ALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~------~g~l~~Lv~----lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
..|+..|...++.++..||.+|.+|+.. .+..+.. ...++.++. .+...++.....+..++..+..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4455555556788999999999999864 3333321 113344433 3333455666666666666554
No 202
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=69.81 E-value=59 Score=32.39 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=82.4
Q ss_pred HHHHhcCCCcc-HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-CCHHHHH
Q 009320 286 SLVNLSLEKKN-KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-ESERTRH 363 (537)
Q Consensus 286 ~L~nLs~~~~~-k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-~~~~~~~ 363 (537)
-|.||-.++.| -.-+++.+++..+..+..-.+.++....+..|...+....... +--...+|-++..+.. +++++.-
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCcceEE
Confidence 45677777765 4678899999999999999999998888999988865433111 1113567888887765 4678888
Q ss_pred HHHHHHHHhhcCh-hhHHHHHhcCcHHHHHHHhc
Q 009320 364 DSALALYHLTLIQ-SNRVKLVKLNAVATLLTMVK 396 (537)
Q Consensus 364 ~A~~aL~nLs~~~-~n~~~iv~~g~v~~Lv~lL~ 396 (537)
.....|.|...+. ..+...+..|+++.|-..+.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 8899999987665 45666678999999988763
No 203
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.33 E-value=13 Score=32.11 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVS------RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.+.|.+.++.++..|+..|-.+.++. ......+.....+.-|++++.. .+..|+..++..|..-+.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999874 5667778888899999998863 478899999888876654
No 204
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=68.06 E-value=15 Score=31.78 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=64.6
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHH------hCCHHHHHHHHHHHHHhh
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEE------RGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~------~~s~~~k~~A~~lL~~L~ 498 (537)
++..|.+-|.+ .++.++-.|+.+|-.+.. ++..+...+.....+..|+.++. ..++.+|++...+++.-+
T Consensus 49 a~ral~krl~~---~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQS---PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 34567676766 789999999999888877 56677777767778888888875 357899999999998877
Q ss_pred cCCCCCcc--hhhhhhhhcCCc
Q 009320 499 GREDDDED--VDWEGVLDSGGL 518 (537)
Q Consensus 499 ~~~~e~~~--~d~~~v~~~g~~ 518 (537)
..-+++.. .-|+.+...|-+
T Consensus 126 ~~f~~~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 126 VGLPEEVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHCTTCHHHHHHHHHHHHTTCC
T ss_pred HHhCCCchHHHHHHHHHHCcCc
Confidence 65444421 123555555544
No 205
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.35 E-value=14 Score=32.86 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVS------RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.++|.+.++.++..|+..|-.+.++. ......+.....+.-|++++.. .+..|+..++..|..-+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999875 4566678888889999999862 367899999988876654
No 206
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=65.67 E-value=15 Score=31.34 Aligned_cols=69 Identities=12% Similarity=0.200 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLS 291 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs 291 (537)
++.|.+.|.+.++.++..|+..|..+.+.. ......+.....+.-|++++...++.|+...+..|...+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 467888899999999999999999998765 344556777778888888887778899999988887665
No 207
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=65.14 E-value=93 Score=35.87 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=124.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC------C
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE------K 294 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~------~ 294 (537)
.++.++..+-+.+.+.+.+|-..|..+-++ + ++...+..+|. +.++.++-.|+.+|.+.... +
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-p---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-P---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-S---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-c---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 356788777666777888888888776543 2 33444444553 45889999999999876542 2
Q ss_pred ccHHHHHhcCCHHHHHHHHcc-----CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHH
Q 009320 295 KNKVLIVRSGFVPLLIDVLKS-----GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALAL 369 (537)
Q Consensus 295 ~~k~~i~~~g~v~~Lv~lL~~-----~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 369 (537)
+.+..+ +...+..+...-.. .++.++...+.+|..++..+-.. .....++.|+.++.. ++......+..|
T Consensus 99 e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 233333 33334444443322 23556666677777765332100 135677778887764 345556666666
Q ss_pred HHhhcC--h-------hh-----HHHHHhc--CcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHH
Q 009320 370 YHLTLI--Q-------SN-----RVKLVKL--NAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILDANGVSIL 430 (537)
Q Consensus 370 ~nLs~~--~-------~n-----~~~iv~~--g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~L 430 (537)
..|+.. . .. +..|.+. .++..+..+|... .....++.+|..+.+--+- ..+.+.+.+..|
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L 252 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHH
Confidence 666532 0 11 1222221 2333333444322 2345577888877765432 356667777776
Q ss_pred H-HHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 431 V-GMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 431 v-~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
+ .+| .++..++.|+.+|..+...
T Consensus 253 ~~~~L-----~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 253 IYKFL-----NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHTS-----SSHHHHHHHHHHHHHHHHS
T ss_pred HHHhc-----CChHHHHHHHHHHHHHHhc
Confidence 3 555 4678999999999998863
No 208
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=63.76 E-value=2.1 Score=29.26 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q 009320 24 QPPKEFLCPVSGS 36 (537)
Q Consensus 24 ~~p~~~~CpI~~~ 36 (537)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 6899999999985
No 209
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=63.52 E-value=2.6 Score=39.94 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=12.4
Q ss_pred HHHHHHHccCCHHHHHHHHHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGA 327 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~ 327 (537)
+.|..++...+.++|..++..
T Consensus 173 ~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 173 ESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp GGGGGSTTCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 334455566667777766654
No 210
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=62.13 E-value=35 Score=39.16 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhcCC-CccHHHHHhcCC
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-----RYSIVQTNAVASLVNLSLE-KKNKVLIVRSGF 305 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~ 305 (537)
..++..++.|+..+..++..-......-.-..+++.|..+... +.+.++..++.++...+.. ..+...+. ..
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~v 541 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TV 541 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HH
Confidence 3678889999999998875322110000011234444443321 2334454677888876642 22222222 35
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccC
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALE 334 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 334 (537)
++.|+..|.+.++.++..|+.+|.+++..
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 67777778878899999999999999874
No 211
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=61.36 E-value=75 Score=37.13 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=80.0
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHH-HH-ccCCHHHHHHHHHHHHHhcC------
Q 009320 223 EEELSKKLRS--ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRN-LV-VSRYSIVQTNAVASLVNLSL------ 292 (537)
Q Consensus 223 ~~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL-~s~~~~v~~~a~~~L~nLs~------ 292 (537)
+..++..+-+ .+...+.+|-..|..+-+.. .+...+.. +. .+.+..++..|+.+|.+...
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 4455554433 36667888888888875432 12333333 33 35578899999988887653
Q ss_pred CCccHHHHHhcCCHHHHHHHHcc---CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHH
Q 009320 293 EKKNKVLIVRSGFVPLLIDVLKS---GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALAL 369 (537)
Q Consensus 293 ~~~~k~~i~~~g~v~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 369 (537)
.++.+..|.+ ..+..+...-.. ....++...+.++..++..+-. -.....++.|+.++.. ++.....++.+|
T Consensus 83 ~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 83 SRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp CHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 2233444332 233333222111 3567888888888877644211 0135778888888876 455567777777
Q ss_pred HHhhc
Q 009320 370 YHLTL 374 (537)
Q Consensus 370 ~nLs~ 374 (537)
..|+.
T Consensus 158 ~~L~E 162 (1204)
T 3a6p_A 158 LRLAE 162 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 212
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=60.41 E-value=1.3e+02 Score=34.16 Aligned_cols=185 Identities=14% Similarity=0.034 Sum_probs=102.7
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHhhcc-ChH----HHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC
Q 009320 223 EEELSKKLRSA---DIALQEEGVIALRRLTRT-NEE----LRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE 293 (537)
Q Consensus 223 ~~~Lv~~L~s~---~~~~~~~A~~~L~~L~~~-~~~----~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~ 293 (537)
.......|.+. +..++.-|+..|++.-+. .++ .+.. ....++..+...-. ....-++...+.+|..+...
T Consensus 42 w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~-lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 42 WKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQM-IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHH-HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 34455566432 688888888888876541 112 2222 22223333333100 23456777777777777652
Q ss_pred CccHHHHHh-cCCHHHHHHHHccCCH-HHHHHHHHHHHHcccC----c-------ch-----hhHHhhc---CchHHHHH
Q 009320 294 KKNKVLIVR-SGFVPLLIDVLKSGSE-ESQEHAAGALFSLALE----D-------EN-----KMAIGVL---GALQPLMH 352 (537)
Q Consensus 294 ~~~k~~i~~-~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~----~-------~~-----k~~I~~~---g~l~~Lv~ 352 (537)
+- -.. .+.++-|+.++..++. ........+|..++.. . .. |..+.+. .+++....
T Consensus 121 ~~----p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~ 196 (980)
T 3ibv_A 121 LY----PSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYE 196 (980)
T ss_dssp HT----TTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hC----cccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHH
Confidence 10 001 3556777777765443 3344445555533211 0 01 2223221 12444455
Q ss_pred Hhcc----CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhc
Q 009320 353 ALRA----ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAA 413 (537)
Q Consensus 353 lL~~----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~ 413 (537)
+|.. .++.....++.+|.....+-. -..++....++.+.++|.+.+....|+.+|..+..
T Consensus 197 iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 197 MMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5543 577788888888888655432 34556678899999999887777778888877765
No 213
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=58.76 E-value=2.9 Score=29.63 Aligned_cols=14 Identities=36% Similarity=1.054 Sum_probs=12.3
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|+.
T Consensus 31 e~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 31 KDIPDDWVCPLCGV 44 (54)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCcCCCC
Confidence 47899999999985
No 214
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.21 E-value=31 Score=29.76 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS------RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.+.|.+.++.++..|+..|-.+.++.. .....+....++.-|++++.. .+..|+...+..|..-+.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999987653 445667788888999999863 578899999998876654
No 215
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=57.48 E-value=5.6 Score=27.94 Aligned_cols=14 Identities=36% Similarity=1.030 Sum_probs=12.3
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 47899999999985
No 216
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=54.17 E-value=3.9 Score=28.75 Aligned_cols=14 Identities=29% Similarity=1.063 Sum_probs=12.3
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|+.
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 47899999999985
No 217
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=53.60 E-value=3.3 Score=24.13 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.3
Q ss_pred cccccccccccc
Q 009320 28 EFLCPVSGSLMF 39 (537)
Q Consensus 28 ~~~CpI~~~~m~ 39 (537)
...||+|++.|-
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 467999988874
No 218
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.26 E-value=25 Score=31.16 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=57.7
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHH------hCCHHHHHHHHHHHHHhhc
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEE------RGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~------~~s~~~k~~A~~lL~~L~~ 499 (537)
+..|.+-|.. .++.++-.|+.+|-.+..+ +..+...+.....+..|+.++. ..+..+|+++..+++.-+.
T Consensus 52 ~ral~krl~~---~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQS---PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567777766 7899999999999988874 5667777777778888888875 2468999999999987776
Q ss_pred CCCCC
Q 009320 500 REDDD 504 (537)
Q Consensus 500 ~~~e~ 504 (537)
.-..+
T Consensus 129 ~f~~~ 133 (171)
T 1juq_A 129 ALPEE 133 (171)
T ss_dssp HCTTC
T ss_pred HcCCC
Confidence 54443
No 219
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=53.16 E-value=4 Score=29.03 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=12.2
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 31 EDIPADWVCPDCGV 44 (55)
T ss_dssp GGSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 46899999999985
No 220
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=52.84 E-value=6.9 Score=30.19 Aligned_cols=14 Identities=29% Similarity=0.835 Sum_probs=12.3
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|+.
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 47899999999986
No 221
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.51 E-value=25 Score=30.30 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=57.8
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHh------CCHHHHHHHHHHHHHhh
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEER------GSQRAKEKAKRILEMLK 498 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~------~s~~~k~~A~~lL~~L~ 498 (537)
++..|.+-|.+ .++.++-.|+.+|-.+.. ++..+...+.....+..|+.++.. .+..+++++..+++.-+
T Consensus 39 a~rai~krl~~---~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQS---PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 34567777766 789999999999998887 466777777777788888888653 47899999999998777
Q ss_pred cCCCC
Q 009320 499 GREDD 503 (537)
Q Consensus 499 ~~~~e 503 (537)
..-+.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 55443
No 222
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.19 E-value=32 Score=31.87 Aligned_cols=74 Identities=7% Similarity=0.067 Sum_probs=55.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHhhcCCCC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L~~~~~e 503 (537)
+..|.+-|.. .++.++-.|+.+|-.+.. .+..+...+.....+..|..++.. .++.+|+++..+++..+..-..
T Consensus 47 ~ral~krl~~---~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 47 VNSIKKKVND---KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567777766 789999999999888887 355566666666677778777654 4689999999999887754333
No 223
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=50.10 E-value=4.8 Score=30.18 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=12.7
Q ss_pred CCCCCcccccccccc
Q 009320 23 KQPPKEFLCPVSGSL 37 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~ 37 (537)
-++|+++.||+|+.-
T Consensus 35 ~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 35 VDLSDSFMCPACRSP 49 (70)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hhCCCCCcCCCCCCC
Confidence 468999999999863
No 224
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=47.09 E-value=1.1e+02 Score=35.33 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-------cCCHHHHHHHHHHHHHhcCCCcc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-------SRYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-------s~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+.|.+.+.+.+.+.+..+++.|.|+... ..++.|.+++. +....++..|+.+|.+++....
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p- 510 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP- 510 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-
Confidence 3445555677888888899999998752 24677777763 2245788899999999985321
Q ss_pred HHHHHhcCCHHHHHHHH--ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 009320 297 KVLIVRSGFVPLLIDVL--KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-ESERTRHDSALALYHLT 373 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL--~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs 373 (537)
..+ -+.|+.++ ...+.++|..|+.+|..-. +. ...+..+...+.. .+.++.......|.+|+
T Consensus 511 -~~v-----~~il~~i~~n~~e~~EvRiaA~~~Lm~t~--P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 511 -RKV-----QEIVLPIFLNVAIKSELRIRSCIVFFESK--PS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp -HHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHTC--CC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -HHH-----HHHHHHHhcCCCCChHHHHHHHHHHHHHC--cC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 111 24566777 4457999999988885431 11 1234556666665 47778888888888887
Q ss_pred cCh
Q 009320 374 LIQ 376 (537)
Q Consensus 374 ~~~ 376 (537)
...
T Consensus 576 ~s~ 578 (1056)
T 1lsh_A 576 RSS 578 (1056)
T ss_dssp TCC
T ss_pred hcC
Confidence 643
No 225
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=46.05 E-value=2.4e+02 Score=28.13 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc-cC
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK-SG 316 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~-~~ 316 (537)
...+...|.-|. ++.+.-.-+...+++..+.....-.+.++....+..|...+........- -...+|-++..+. ++
T Consensus 260 vtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 260 IIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCC
Confidence 344555555555 45666677788999999999999999999999999999887533221110 1245677777665 56
Q ss_pred CHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccC-------CHH-------HHHHHHHHHHHhhc-C-----
Q 009320 317 SEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAE-------SER-------TRHDSALALYHLTL-I----- 375 (537)
Q Consensus 317 ~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~-------~~~-------~~~~A~~aL~nLs~-~----- 375 (537)
+.++.-...+.|.|...... .|..-...++++.|-+.+... +.. +.-+++.+|-|+.. +
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 78888889999999876654 454444688999888877543 112 23344556655331 1
Q ss_pred ------hh-hH---HHHHhcCcHHHHHHHhc
Q 009320 376 ------QS-NR---VKLVKLNAVATLLTMVK 396 (537)
Q Consensus 376 ------~~-n~---~~iv~~g~v~~Lv~lL~ 396 (537)
.+ -+ .+.++-.+++.|+..|+
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS 448 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLS 448 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHH
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 12 33445678888888876
No 226
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=45.94 E-value=6.2 Score=30.88 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=12.3
Q ss_pred CCCCCccccccccc
Q 009320 23 KQPPKEFLCPVSGS 36 (537)
Q Consensus 23 ~~~p~~~~CpI~~~ 36 (537)
.++|+++.||+|+.
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 47899999999985
No 227
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.42 E-value=52 Score=30.42 Aligned_cols=70 Identities=7% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~ 292 (537)
++.|.+.|.+.++.++..|+..|-.+.++. ......+.....+..|++++.. .+..|+..++..|...+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999998764 3456667777788888888754 567899999988876653
No 228
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=45.34 E-value=11 Score=33.49 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFK 72 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~ 72 (537)
++.+..+.|++|+.++.+ .....||+|+.+
T Consensus 133 ~~~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 133 IEIKKVYICPICGYTAVD--------------------EAPEYCPVCGAP 162 (170)
T ss_dssp CCCSCEEECTTTCCEEES--------------------CCCSBCTTTCCB
T ss_pred CCCCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCC
Confidence 345667889988776652 223479999865
No 229
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.14 E-value=51 Score=30.22 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLS 291 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs 291 (537)
++.|.+.|.+.++.++..|+..|-.+.++. ......+.....+..|+.++.. .+..|+..++..+..-+
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999875 3455677777788888888764 46788888888776554
No 230
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=42.57 E-value=12 Score=30.95 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=37.6
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
|+-|.|..|...+.+ +.....|..||+.|..+-+ ...|..|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 678999999998876 6677889999999875532 3468899988775
No 231
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=42.50 E-value=68 Score=27.76 Aligned_cols=69 Identities=9% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHH-HHHHHcc---CCHHHHHHHHHHHHHhc
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSA-LRNLVVS---RYSIVQTNAVASLVNLS 291 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~s---~~~~v~~~a~~~L~nLs 291 (537)
++.|.+.|. +.++.++..|+..|-.+.++. ......+.....+.- |++++.. .+..|+..++..|..-+
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 467888887 589999999999999999875 566667788888887 7888742 34688888888776554
No 232
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.10 E-value=8.9 Score=31.81 Aligned_cols=52 Identities=12% Similarity=-0.017 Sum_probs=39.9
Q ss_pred CCccccccccccccC---CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78 (537)
Q Consensus 26 p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 78 (537)
|+-|.|..|...+.| .-....|..||+.|..+-|.. ...|-.|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 567999999999974 567788999999998876643 1258888888775443
No 233
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=42.01 E-value=35 Score=29.13 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=50.3
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHC-CcHHHHHHHHHh-----C-C--HHHHHHHHHHHHHh
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEA-RAAEVLREVEER-----G-S--QRAKEKAKRILEML 497 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~-g~i~~L~~ll~~-----~-s--~~~k~~A~~lL~~L 497 (537)
..|.+-|.. .++.++-.|+.+|..||. +++.+...+++. ..|..|..+..- | + ..++..|.+++..|
T Consensus 52 ~~L~kRL~~---k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 52 EFILKRLDN---KSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHTS---SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC---CCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 567777766 678899999999999997 566776666543 334444443211 1 2 57899999999999
Q ss_pred hcCC
Q 009320 498 KGRE 501 (537)
Q Consensus 498 ~~~~ 501 (537)
....
T Consensus 129 ~d~~ 132 (140)
T 1vdy_A 129 FSEE 132 (140)
T ss_dssp TCCS
T ss_pred hCcC
Confidence 8764
No 234
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=41.83 E-value=50 Score=31.15 Aligned_cols=132 Identities=12% Similarity=0.079 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHHhhcChh-hHHHHHhcCcHHHHHHHhc----CC------chHHHHHHHHHHHhcChh-hHHHHHh
Q 009320 356 AESERTRHDSALALYHLTLIQS-NRVKLVKLNAVATLLTMVK----SG------ESTSRVLLILCNLAASNE-GRSAILD 423 (537)
Q Consensus 356 ~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~----~~------~~~~~al~~L~nLa~~~~-~r~~i~~ 423 (537)
+..+..+.-++.++.|+-.++. .+..+.+......+++.+. +. +.+-.+...+.|++..-. .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467788899999999988887 5665654444555555442 11 122235677888875321 010 1
Q ss_pred CCcHHHHHHHHhcc---C---CCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHH-H-hCCHHHHHHHHHH
Q 009320 424 ANGVSILVGMLRES---G---SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVE-E-RGSQRAKEKAKRI 493 (537)
Q Consensus 424 ~g~I~~Lv~lL~~~---~---~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll-~-~~s~~~k~~A~~l 493 (537)
......+++++... . ..+.+..-.++.+|.+|...+...++.+.. ...+-... . ...+|++.-+..+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTTT---CHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhcc---HHHHHHHHHHcccchHHHHHHHhc
Confidence 23345566665521 0 136677888888888888755444433322 22332322 1 2456777665543
No 235
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=41.70 E-value=11 Score=30.10 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=11.3
Q ss_pred cccHHHHHHHHHc
Q 009320 49 TFDRVSVQVCREL 61 (537)
Q Consensus 49 ty~r~~i~~~~~~ 61 (537)
-|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999965
No 236
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=41.00 E-value=11 Score=29.94 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=11.3
Q ss_pred cccHHHHHHHHHc
Q 009320 49 TFDRVSVQVCREL 61 (537)
Q Consensus 49 ty~r~~i~~~~~~ 61 (537)
-|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999964
No 237
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=40.71 E-value=2.7e+02 Score=27.30 Aligned_cols=204 Identities=10% Similarity=0.055 Sum_probs=140.7
Q ss_pred hhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-cc----HHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 259 ICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KN----KVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 259 i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~----k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
+...+.+..|+..|..=+.+.+..+..+..++.... .+ ...+.. ...+..|+.-.. ++++--.+-..|+...
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHH
Confidence 345688899999888888899999998888887632 22 233333 222223332222 4455555666777777
Q ss_pred cCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh-cChhhHHHHHhcC---cHHHHHHHhcCCc--hHHHHHH
Q 009320 333 LEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLT-LIQSNRVKLVKLN---AVATLLTMVKSGE--STSRVLL 406 (537)
Q Consensus 333 ~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~~g---~v~~Lv~lL~~~~--~~~~al~ 406 (537)
..+.....|...+.+-.+.+.+..++-++...|..++..|- .+..........+ .....-.+|.+++ .+.+++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 77777777777777888999999888888899999888754 4555555555432 5555666777777 4555999
Q ss_pred HHHHHhcChhhHHHHHh----CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC---ChHHHHHHH
Q 009320 407 ILCNLAASNEGRSAILD----ANGVSILVGMLRESGSDSEATRENCVAALFALGHG---NLRFKGLAK 467 (537)
Q Consensus 407 ~L~nLa~~~~~r~~i~~----~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~---~~~~~~~i~ 467 (537)
.|..|-....+...+.. ..-+..++.+|++ .+..++-.|..++--...+ +..+..++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d---~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~ 296 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD---KSRNIQFEAFHVFKVFVANPNKTQPILDILL 296 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcC---chhchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence 99999888877666542 3337888999988 8999999999988877664 344555544
No 238
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=40.26 E-value=45 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=13.3
Q ss_pred CCCCccccccccccccCC
Q 009320 24 QPPKEFLCPVSGSLMFDP 41 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dP 41 (537)
.....|.|++|...|...
T Consensus 13 ~~~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCCCBCSSSCCBCSSH
T ss_pred CCCcCeECCCCCCccCCH
Confidence 344569999998888654
No 239
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=39.74 E-value=2.4e+02 Score=27.28 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=68.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccChHHHHHhhc--CChHHHHHHHHcc-------CCHHHHHHHHHHHHHhcCCCccHHH
Q 009320 229 KLRSADIALQEEGVIALRRLTRTNEELRVSICT--PNLLSALRNLVVS-------RYSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 229 ~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~s-------~~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+..+..+..++.|.+.|....+.|+.....+.+ ...+..+..-|.. ....++..-+.+|-.|..+.. .
T Consensus 78 ~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~ 154 (315)
T 3qml_C 78 LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---D 154 (315)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---T
T ss_pred hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---h
Confidence 335567788999999999999999988877754 5555555544322 244566677778888887652 1
Q ss_pred HHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHc
Q 009320 300 IVRSGFVPLLIDVLKSG--SEESQEHAAGALFSL 331 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~--~~e~~~~Aa~~L~~L 331 (537)
+ ...++..|..++... +..++..++.++..+
T Consensus 155 F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 155 L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 2 144678888888777 788888777776554
No 240
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=39.61 E-value=1.5e+02 Score=27.59 Aligned_cols=139 Identities=18% Similarity=0.014 Sum_probs=82.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHccc-CcchhhHHh
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLID-VLKSGSEESQEHAAGALFSLAL-EDENKMAIG 342 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~ 342 (537)
+++...+..++..+++..|+.+|..+ . ... ..++.+.. +-...+-.+++.++.++..++. ....
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~~~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--KDK------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--TSH------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--CcH------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 44555566777789999999988877 2 111 23444555 3445678999999999988764 2111
Q ss_pred hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHh-cCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhH
Q 009320 343 VLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVK-LNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGR 418 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r 418 (537)
..++.+...+.+++..+++.|...+.--+..+.- ... .-+++.|-.+..+.+ ++......|..++. .|+..
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 2567788889999999999998776542221100 001 113333333444444 34446677777776 34444
Q ss_pred HHHH
Q 009320 419 SAIL 422 (537)
Q Consensus 419 ~~i~ 422 (537)
..++
T Consensus 214 ~~~~ 217 (240)
T 3l9t_A 214 KIEL 217 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 241
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.48 E-value=8.3 Score=30.62 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=25.7
Q ss_pred cccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
..||.|...|. + ..|+.+|..|=..+.. ...||.|++++.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc--cccCcchhhHHH
Confidence 79999998875 2 2455558887221111 125999998874
No 242
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.46 E-value=25 Score=25.52 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=27.2
Q ss_pred CCccccccccccccCC-eecCCCccccHHHHHHHHHc
Q 009320 26 PKEFLCPVSGSLMFDP-VVVSTGQTFDRVSVQVCREL 61 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~ 61 (537)
|+-|.|..|...+.+- .....|.-||+.|..+-+..
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 6779999998888773 34467889999988776543
No 243
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=36.87 E-value=1.2e+02 Score=35.44 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=102.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcc-----ChHHHHHhhcCChHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCC-ccHHHHH
Q 009320 231 RSADIALQEEGVIALRRLTRT-----NEELRVSICTPNLLSALRNLVV---SRYSIVQTNAVASLVNLSLEK-KNKVLIV 301 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~-----~~~~r~~i~~~g~i~~Lv~lL~---s~~~~v~~~a~~~L~nLs~~~-~~k~~i~ 301 (537)
.+.+..++.-|+..|++..+. .++.+..|. ..++..+..... .....++...+.+|..++..+ ...
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---- 131 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---- 131 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----
Confidence 356788888899888887543 233444332 223333332211 135778888888888877632 111
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC---c----chhh-----HHhh--cCchHHHHHHhccC----------
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALE---D----ENKM-----AIGV--LGALQPLMHALRAE---------- 357 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~----~~k~-----~I~~--~g~l~~Lv~lL~~~---------- 357 (537)
=.+.++.|+.++.. +...++.+..+|..|+.. . ..|. .+.+ ..++..+..+|...
T Consensus 132 Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 14667888888865 556677788888877532 1 1111 1221 12344444444431
Q ss_pred ---------CHHHHHHHHHHHHHhhcChhhHHHHHhc--CcHHHHHHHhcCCchHHHHHHHHHHHhcC
Q 009320 358 ---------SERTRHDSALALYHLTLIQSNRVKLVKL--NAVATLLTMVKSGESTSRVLLILCNLAAS 414 (537)
Q Consensus 358 ---------~~~~~~~A~~aL~nLs~~~~n~~~iv~~--g~v~~Lv~lL~~~~~~~~al~~L~nLa~~ 414 (537)
+......++.++.+...+-.. ..+++. ..++.+..++.+.+....|+.+|..+...
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 123555666677665443222 223333 37888888888888888899999988863
No 244
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.59 E-value=24 Score=26.86 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCCccccccccccccCCeecCC----CccccHHHHHHHHHc
Q 009320 25 PPKEFLCPVSGSLMFDPVVVST----GQTFDRVSVQVCREL 61 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~----G~ty~r~~i~~~~~~ 61 (537)
.-..++|.+|.+=+.|-=.+.| +|.||-.|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3457999999999999765544 799999998877654
No 245
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.88 E-value=21 Score=29.71 Aligned_cols=49 Identities=8% Similarity=-0.103 Sum_probs=38.4
Q ss_pred CCcccccccccccc---CCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMF---DPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
|+-|.|..|...+. .+.....|.-||+.+..+-+.. ...|..|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 78899999999996 3778889999999998765432 1258889887754
No 246
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=35.29 E-value=39 Score=29.89 Aligned_cols=48 Identities=4% Similarity=-0.150 Sum_probs=32.4
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
|+-|.|..|...+.+--....|.-||+.|..+-+ ...|..|++++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 5668888888877664445678888888754422 23577787776543
No 247
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=34.98 E-value=1.3e+02 Score=30.60 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=63.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CCHHHHHHHHcc--------CCHHHHHHHHHHHHHcccCcch-hhHHh
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLIVRS-GFVPLLIDVLKS--------GSEESQEHAAGALFSLALEDEN-KMAIG 342 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~-g~v~~Lv~lL~~--------~~~e~~~~Aa~~L~~Ls~~~~~-k~~I~ 342 (537)
.+..+..+--++++|.|+-.++.-...++.. .....++..+.. .+..++..++.+++|++..... +.
T Consensus 272 ~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~--- 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---
T ss_pred CCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 3456788888999999999888744444432 234556655421 2356888999999999854221 11
Q ss_pred hcCchHHHHHHhc---------cCCHHHHHHHHHHHHHhhc
Q 009320 343 VLGALQPLMHALR---------AESERTRHDSALALYHLTL 374 (537)
Q Consensus 343 ~~g~l~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~ 374 (537)
+...+..+++++. ..++++.-.++.||.+|..
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1223445556555 2367777888888888765
No 248
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.39 E-value=37 Score=32.09 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCCHHHHHHHHcc--------CCHHHHHHHHHHHHHcccCcch-hhHHh
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKK-NKVLIVRSGFVPLLIDVLKS--------GSEESQEHAAGALFSLALEDEN-KMAIG 342 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~-~k~~i~~~g~v~~Lv~lL~~--------~~~e~~~~Aa~~L~~Ls~~~~~-k~~I~ 342 (537)
.+.++..+--+++++.|+-.++. .+..+........++..+.. .+..++..++.+++|++..... +.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 34567888999999999999887 56555443233444443311 2456888999999999854221 11
Q ss_pred hcCchHHHHHHhcc---------CCHHHHHHHHHHHHHhhc
Q 009320 343 VLGALQPLMHALRA---------ESERTRHDSALALYHLTL 374 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~---------~~~~~~~~A~~aL~nLs~ 374 (537)
+......+++++.. .++++...++-||.+|..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12233445555442 255666667777777654
No 249
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.31 E-value=13 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=28.0
Q ss_pred CCcccccccccccc--CCeecCCCccccHHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMF--DPVVVSTGQTFDRVSVQVCRE 60 (537)
Q Consensus 26 p~~~~CpI~~~~m~--dPV~~~~G~ty~r~~i~~~~~ 60 (537)
|+-|.|..|...+. +.....-|..||+.|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 77899999999887 566777889999998766443
No 250
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=34.26 E-value=35 Score=29.82 Aligned_cols=48 Identities=4% Similarity=-0.119 Sum_probs=37.0
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
|+-|.|..|...+.+--....|.-||+.|..+-+. ..|..|++++...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 68899999999888765567899999999766543 3577787776553
No 251
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.10 E-value=27 Score=26.90 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=13.1
Q ss_pred CccccccccccccC-CeecCCCccccHHHHH
Q 009320 27 KEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQ 56 (537)
Q Consensus 27 ~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~ 56 (537)
+-|.|..|...+.+ ......|.-||+.|..
T Consensus 50 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 80 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYE 80 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEESSSCEECHHHHH
T ss_pred cCCccCCCCCCCCCCEeEeECCEEECHHHHH
Confidence 33445555444432 2233444455554443
No 252
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=33.24 E-value=3.1e+02 Score=25.69 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH--------HhcCCC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLV--------NLSLEK 294 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~--------nLs~~~ 294 (537)
++.++++-.+.+.+++...+..|...++..++.- ...++.|..++.++++.+...++.+.. .++.++
T Consensus 55 l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~ 129 (257)
T 3gs3_A 55 LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM 129 (257)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566665567788999999999998886554432 235788888888888888777766433 333333
Q ss_pred cc---HHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHHc
Q 009320 295 KN---KVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFSL 331 (537)
Q Consensus 295 ~~---k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~L 331 (537)
.. ....=+ ...-..++.++.+++..+|..++..+..+
T Consensus 130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 130 EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 21 111111 12334566777788888998888877664
No 253
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=33.12 E-value=25 Score=29.13 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=23.5
Q ss_pred ccccccccccccCC-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDP-VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
.-.|+-|.+...+. ++..-|..|-+.| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 35677777776666 3556677766665 24555666553
No 254
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.81 E-value=50 Score=23.91 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=29.4
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHHHHHc
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQVCREL 61 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~~ 61 (537)
++-|.|..|...+.+ +.....|.-||+.|..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 567999999988865 356778999999999887765
No 255
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.68 E-value=30 Score=24.99 Aligned_cols=34 Identities=6% Similarity=0.023 Sum_probs=26.5
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQVCR 59 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~ 59 (537)
|+-|.|..|...+.+ +-....|.-||+.|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 678999999988865 4556789999999876543
No 256
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.50 E-value=90 Score=28.51 Aligned_cols=71 Identities=6% Similarity=0.032 Sum_probs=53.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHhhcC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L~~~ 500 (537)
+..|.+-|.. .++.++..|+.+|-.+..+ +..+...+.....+..|+.++.+ .+..+++++..+++.-...
T Consensus 44 ~r~l~krl~~---~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 44 FAAIKKKMNS---PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4566666666 7899999999999988874 45566666566677788887664 4689999999999776643
No 257
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=31.45 E-value=12 Score=33.49 Aligned_cols=49 Identities=10% Similarity=-0.069 Sum_probs=38.9
Q ss_pred CCccccccccccccC---CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
|+-|.|..|...+.+ +.....|.-||+.|..+-+.. ...|..|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 678999999999985 788899999999998765432 1158889887764
No 258
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.40 E-value=1.1e+02 Score=20.33 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=24.5
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHH-c--C--CCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE-L--G--FLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~-~--~--~~~cp~~~~~~~~ 75 (537)
..|.|++|...|.. +..+.++.. . + ...|+.|++.+..
T Consensus 11 k~~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 45899998776654 345556654 2 2 2369999887754
No 259
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.27 E-value=40 Score=25.21 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=27.7
Q ss_pred CCcccccccccccc--CCeec-CCCccccHHHHHHHHHc
Q 009320 26 PKEFLCPVSGSLMF--DPVVV-STGQTFDRVSVQVCREL 61 (537)
Q Consensus 26 p~~~~CpI~~~~m~--dPV~~-~~G~ty~r~~i~~~~~~ 61 (537)
|+-|.|..|...+. ++..+ ..|.-||+.|..+.+..
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 67899999999885 56663 78899999988766543
No 260
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.61 E-value=24 Score=25.27 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHH
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQV 57 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~ 57 (537)
|+-|.|..|...+.+ +-....|.-||+.|..+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 567888888876655 45566788888887654
No 261
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.58 E-value=44 Score=24.05 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=27.7
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQVCRE 60 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~ 60 (537)
|+-|.|..|...+.+ ......|..||+.|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 577999999988865 45667899999999876654
No 262
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=29.73 E-value=2.7e+02 Score=25.03 Aligned_cols=153 Identities=11% Similarity=0.076 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhcCCCccH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS------RYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
+++.+.+.+ ..+..|+..|+.-+.- .-.+|-++.++.+ .+.......+.....|..++.-.
T Consensus 14 ~~It~a~~~---~~r~~aL~sL~~D~gL----------~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 14 DKILSMIKS---DMKDIAIECLEKESGL----------QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp HHHHHHHTS---TTHHHHHHHHHHCSSC----------TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHh---HHHHHHHHHHhcCCCh----------hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCC
Confidence 455555544 3456666666654422 2346777766632 35555555555555555544321
Q ss_pred HHHHhcCCHHHHHHHHcc---CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHh
Q 009320 298 VLIVRSGFVPLLIDVLKS---GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHL 372 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nL 372 (537)
...--.-.+|+++..+-. +...+|+.|+.+|..++..-.....-.+..++..+.+.+-++ +....--|+..|..|
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 111011245666665432 234899999999999985533222222334455666666544 333344444444444
Q ss_pred hcChhhHHHHHhcCcHHHHHHHh
Q 009320 373 TLIQSNRVKLVKLNAVATLLTMV 395 (537)
Q Consensus 373 s~~~~n~~~iv~~g~v~~Lv~lL 395 (537)
- ...++.-++|.+-.+.
T Consensus 161 G------~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 161 S------KNVVNTVIREHAEEYK 177 (196)
T ss_dssp C------HHHHHTHHHHHHHHHH
T ss_pred H------HHHHHHhhhcCHHHHH
Confidence 2 2345554555554443
No 263
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.01 E-value=1.2e+02 Score=26.08 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=51.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHH-HHHHHHh---CCHHHHHHHHHHHHHhhc
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGH-GNLRFKGLAKEARAAEV-LREVEER---GSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~-L~~ll~~---~s~~~k~~A~~lL~~L~~ 499 (537)
+..|.+-|.. ..++.++-.|+.+|-.+.. ++..+...+.....+.. |+.++.. ....+|+++..+++.-+.
T Consensus 55 ~ral~krl~~--~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVG--NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4566666642 2678889999999888887 45677776766677776 7777642 346899999999977664
No 264
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=26.66 E-value=23 Score=23.84 Aligned_cols=37 Identities=5% Similarity=-0.064 Sum_probs=22.0
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHH----cCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE----LGFLPDLENGFKPDF 75 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~----~~~~~cp~~~~~~~~ 75 (537)
.|.|++|...|... ..+..+.. .....|+.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSN-----------YYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCH-----------HHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCCh-----------HHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 47899888777665 33333332 222359999876654
No 265
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=26.42 E-value=2.9e+02 Score=28.59 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCH--H-HHHHHHHHHHHhcCCCccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYS--I-VQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~--~-v~~~a~~~L~nLs~~~~~k~~ 299 (537)
++.+++.|.|++......|++.|. ....+..++..+++..|+.++...+. . +....-.++..|+.++=.+..
T Consensus 118 ve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrr 192 (500)
T 3vld_A 118 AEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRR 192 (500)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHH
Confidence 478999999998988888888777 24456678889999999999876432 3 555555566677765545666
Q ss_pred HHhcCCHHHHHHHHccCCHH
Q 009320 300 IVRSGFVPLLIDVLKSGSEE 319 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e 319 (537)
+.+. -++.|.++=...++-
T Consensus 193 il~n-nl~lL~~vK~~~~~i 211 (500)
T 3vld_A 193 LFDN-NLPYLVSVKGRMETV 211 (500)
T ss_dssp HHTT-THHHHHHHHHHCCHH
T ss_pred HHHH-hHHHHHHHhcCCCce
Confidence 6653 455555555445543
No 266
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.84 E-value=44 Score=26.10 Aligned_cols=47 Identities=6% Similarity=-0.180 Sum_probs=34.9
Q ss_pred CCccccccccccccCC-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDP-VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
|+-|.|..|...+.+. .....|..||+.+..+ .-...|..|++++.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 6779999999988764 5567899999988532 223358888887763
No 267
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.54 E-value=7.9e+02 Score=27.97 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=71.0
Q ss_pred HHHHHHHcc----CCHHHHHHHHHHHHHcc----cCcch-hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh
Q 009320 307 PLLIDVLKS----GSEESQEHAAGALFSLA----LEDEN-KMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 307 ~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls----~~~~~-k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 377 (537)
..+..++.+ .++.++..+.-++..|. ..... ...+. ..+...|.+.+.+++..-+..++.+|.|+-..
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 344445543 35666666666665554 22211 11111 11233344445566777788899999998542
Q ss_pred hHHHHHhcCcHHHHHHHhcC-----Cc----hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHH
Q 009320 378 NRVKLVKLNAVATLLTMVKS-----GE----STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~-----~~----~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
..++.|..++.. .+ ++..|+.+|.+++... .. .+-+.+.+++.+ ...+.++|-.|
T Consensus 471 --------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p~-----~v~~il~~i~~n-~~e~~EvRiaA 534 (1056)
T 1lsh_A 471 --------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--PR-----KVQEIVLPIFLN-VAIKSELRIRS 534 (1056)
T ss_dssp --------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--HH-----HHHHHHHHHHHC-TTSCHHHHHHH
T ss_pred --------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--hH-----HHHHHHHHHhcC-CCCChHHHHHH
Confidence 467777777642 11 2334677776665321 11 123567777765 23678888777
Q ss_pred HHHHHH
Q 009320 449 VAALFA 454 (537)
Q Consensus 449 ~~~L~~ 454 (537)
+.+|..
T Consensus 535 ~~~Lm~ 540 (1056)
T 1lsh_A 535 CIVFFE 540 (1056)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777754
No 268
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.53 E-value=5.1e+02 Score=26.19 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHhhcChhhHHHHHhc-CcHHHHHHHhcCC----------chHHHHHHHHHHHhcChhh-HHHHHh
Q 009320 356 AESERTRHDSALALYHLTLIQSNRVKLVKL-NAVATLLTMVKSG----------ESTSRVLLILCNLAASNEG-RSAILD 423 (537)
Q Consensus 356 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~~----------~~~~~al~~L~nLa~~~~~-r~~i~~ 423 (537)
+..+..+..++.+|.||-.++.-...++.. .....+++.+... ..+-.+...+.|++..-.. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 446778888999999998888755555543 3456666655311 1222356777788753210 10 1
Q ss_pred CCcHHHHHHHHhc----c--CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH--hCCHHHHHHHHH
Q 009320 424 ANGVSILVGMLRE----S--GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE--RGSQRAKEKAKR 492 (537)
Q Consensus 424 ~g~I~~Lv~lL~~----~--~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~--~~s~~~k~~A~~ 492 (537)
...+..+++++.. . ...+.++.-.++.+|.+|....+..++.+.. +..+-.... ...+|++.-+..
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~e 423 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDD 423 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTT---CHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcC---HHHHHHHHHhcccchHHHHHHHh
Confidence 2334566666651 0 0147788888999999998766555555443 233333322 245676665544
No 269
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.47 E-value=33 Score=25.65 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=13.3
Q ss_pred ccccccccccccCCeecCCCccccHHH
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVS 54 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~ 54 (537)
.-.|+-|.+...+.++..-|..|-..|
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C 41 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC 41 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT
T ss_pred CCccccCCCCccCcEEEECcceeCcCc
Confidence 344555555554555445555444443
No 270
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.09 E-value=33 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCccccccccccccCCeecCCCccccHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQ 56 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~ 56 (537)
|+-|.|..|...+.+--...-|..||+.|..
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~ 69 (79)
T 2cor_A 39 PDHFNCANCGKELTADARELKGELYCLPCHD 69 (79)
T ss_dssp TTTSBCSSSCCBCCTTCEEETTEEECHHHHH
T ss_pred CCCCEeCCCCCccCCCCEeECCEEeCHHHHH
Confidence 6678888888777664445568888887753
No 271
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.05 E-value=33 Score=26.30 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQVCR 59 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~ 59 (537)
++-|.|..|...+.+ .-....|.-||+.|..+-|
T Consensus 49 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 49 PECFVCADCNLNLKQKGYFFVEGELYCETHARART 83 (89)
T ss_dssp TTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHS
T ss_pred ccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHh
No 272
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.72 E-value=1e+02 Score=30.76 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=61.8
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC-CHHHHHHHHc--------cCCHHHHHHHHHHHHHcccCcch-hhHHh
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG-FVPLLIDVLK--------SGSEESQEHAAGALFSLALEDEN-KMAIG 342 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g-~v~~Lv~lL~--------~~~~e~~~~Aa~~L~~Ls~~~~~-k~~I~ 342 (537)
.+..+..+--++++|.|+-.++.-...++... ....++..+. ..+..++..++.+++|++..... +.
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~--- 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 34567888889999999998887444444321 2334444331 12456888999999999854321 11
Q ss_pred hcCchHHHHHHhc---------cCCHHHHHHHHHHHHHhhc
Q 009320 343 VLGALQPLMHALR---------AESERTRHDSALALYHLTL 374 (537)
Q Consensus 343 ~~g~l~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~ 374 (537)
....+..+++++. ..++++.-.++.||.+|..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1223445566665 2467788888888888765
No 273
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.51 E-value=40 Score=24.43 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=25.2
Q ss_pred CCccccccccccccC-CeecCCCccccHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDRVSVQVC 58 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~ 58 (537)
|+-|.|..|...+.+ +.....|.-||+.|..+-
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 31 EHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred cccCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 567899999888776 555667889998887554
No 274
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.22 E-value=16 Score=29.77 Aligned_cols=13 Identities=8% Similarity=-0.501 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCC
Q 009320 63 FLPDLENGFKPDF 75 (537)
Q Consensus 63 ~~~cp~~~~~~~~ 75 (537)
+.+||+|++++.+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5689999998764
No 275
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.92 E-value=27 Score=26.36 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=17.0
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQV 57 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~ 57 (537)
|+-|.|..|...+.+-.....|.-||+.|..+
T Consensus 40 ~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 40 VSCFKCQTCSVILTGEYISKDGVPYCESDYHA 71 (80)
T ss_dssp TTTCBCSSSCCBCSSCCEEETTEEECTTHHHH
T ss_pred cccCCcCcCCCCcCCCeEEECCEEECHHHHHH
Confidence 34456666655555444444556666655433
No 276
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.68 E-value=71 Score=25.70 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCccccccccccccC---CeecCCCccccHHHHHHHHHc
Q 009320 26 PKEFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCREL 61 (537)
Q Consensus 26 p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~ 61 (537)
|+-|.|..|...+.+ +-...-|..||+.+..+-|..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 688999999999985 677788999999998876654
No 277
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.47 E-value=20 Score=32.34 Aligned_cols=9 Identities=0% Similarity=-0.463 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 009320 64 LPDLENGFK 72 (537)
Q Consensus 64 ~~cp~~~~~ 72 (537)
..||+|+.+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 379999875
No 278
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.35 E-value=42 Score=27.58 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCcccccccccccc--CCeecCCCccccHHHHHHHHHc
Q 009320 26 PKEFLCPVSGSLMF--DPVVVSTGQTFDRVSVQVCREL 61 (537)
Q Consensus 26 p~~~~CpI~~~~m~--dPV~~~~G~ty~r~~i~~~~~~ 61 (537)
++-|.|..|...+. +......|.-||+.|..+.+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 67899999999984 5677888999999999887754
No 279
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.10 E-value=67 Score=24.07 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=10.4
Q ss_pred CccccccccccccCC
Q 009320 27 KEFLCPVSGSLMFDP 41 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP 41 (537)
..|.|++|...|...
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 6 SGVACEICGKIFRDV 20 (95)
T ss_dssp SCEECSSSCCEESSS
T ss_pred CCeECCCCCCccCCh
Confidence 347788877777654
No 280
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.30 E-value=50 Score=24.27 Aligned_cols=44 Identities=9% Similarity=0.065 Sum_probs=32.5
Q ss_pred CCccccccccccccC-CeecCCCccccH-HHHHHHHHcCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD-PVVVSTGQTFDR-VSVQVCRELGFLPDLENGFK 72 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-PV~~~~G~ty~r-~~i~~~~~~~~~~cp~~~~~ 72 (537)
|+-|.|..|...+.+ +-....|.-||+ .|..+-+. ..|-.|+..
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~ 70 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGA 70 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCc
Confidence 678999999999887 667788999998 58755432 236566543
No 281
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=22.11 E-value=9.2e+02 Score=27.55 Aligned_cols=215 Identities=10% Similarity=0.042 Sum_probs=118.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccC------cch
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALE------DEN 337 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~------~~~ 337 (537)
+..++..+.+++.+.+..|-..|..+-.+++. ...+..+|. +.++.+|..|+.+|.+.... ++.
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 33444444556677778888888777665533 222223343 34789999999999886532 122
Q ss_pred hhHHhhcCchHHHHHHhcc-----CCHHHHHHHHHHHHHhhc--ChhhHHHHHhcCcHHHHHHHhcCCc-hHHHHHHHHH
Q 009320 338 KMAIGVLGALQPLMHALRA-----ESERTRHDSALALYHLTL--IQSNRVKLVKLNAVATLLTMVKSGE-STSRVLLILC 409 (537)
Q Consensus 338 k~~I~~~g~l~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~--~~~n~~~iv~~g~v~~Lv~lL~~~~-~~~~al~~L~ 409 (537)
+..| +...+..+...-.. .++..+...+.++..+.. .++. ..+.++-+++.+.... ..+..+.+|.
T Consensus 101 ~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRTSESLCQNNMVILK 174 (1073)
T ss_dssp HHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2222 22233333333222 134455555556655543 2221 2456777777775332 3455777777
Q ss_pred HHhcCh-h--------h-----HHHHHhC--CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHH
Q 009320 410 NLAASN-E--------G-----RSAILDA--NGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAE 473 (537)
Q Consensus 410 nLa~~~-~--------~-----r~~i~~~--g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~ 473 (537)
.|+..- + . ++.+.+. ..+..+..+|.. ..++.+...++.+|.....--+ ...+.+.+.++
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~--~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~ 250 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN--SQNAPLVHATLETLLRFLNWIP--LGYIFETKLIS 250 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHH
Confidence 776531 1 1 2223322 123444445554 2567778888888887765221 23455677777
Q ss_pred HHH-HHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 474 VLR-EVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 474 ~L~-~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.|+ .++ .++..+..|..+|..+...
T Consensus 251 ~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 251 TLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 664 444 5788999999998776554
No 282
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=21.88 E-value=1.2e+02 Score=22.83 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=13.8
Q ss_pred CCCCCCcccccc--ccccccCC
Q 009320 22 PKQPPKEFLCPV--SGSLMFDP 41 (537)
Q Consensus 22 ~~~~p~~~~CpI--~~~~m~dP 41 (537)
+.+-...|.|++ |...|..+
T Consensus 9 ~~~~~~~~~C~~~~C~~~f~~~ 30 (100)
T 2ebt_A 9 DLEKRRIHYCDYPGCTKVYTKS 30 (100)
T ss_dssp CCCSCCCEECCSSSCCCEESCH
T ss_pred ccccCcceEcCCCCCCCcccCH
Confidence 344455799997 88888643
No 283
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.01 E-value=48 Score=25.38 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=25.5
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHc--CC--CCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GF--LPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~--~~cp~~~~~~~~ 75 (537)
.+.+.|++|...|... ..+.++... +. ..|+.|++.+..
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 3458899988777653 555666543 22 259999887654
No 284
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.15 E-value=63 Score=23.36 Aligned_cols=31 Identities=6% Similarity=0.043 Sum_probs=23.7
Q ss_pred CCccccccccccccCC-eecCCCccccHHHHH
Q 009320 26 PKEFLCPVSGSLMFDP-VVVSTGQTFDRVSVQ 56 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~ 56 (537)
|+-|.|..|...+.+- -....|.-||+.|..
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcC
Confidence 6779999998877653 345778999988864
Done!