Query 009321
Match_columns 537
No_of_seqs 362 out of 2417
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0215 CysS Cysteinyl-tRNA sy 100.0 2E-130 5E-135 1005.0 43.0 456 18-510 1-464 (464)
2 PLN02946 cysteine-tRNA ligase 100.0 2E-125 3E-130 1005.1 48.1 497 14-516 55-551 (557)
3 PRK14535 cysS cysteinyl-tRNA s 100.0 2E-120 4E-125 968.3 48.0 464 9-509 218-698 (699)
4 PRK14536 cysS cysteinyl-tRNA s 100.0 1E-117 2E-122 937.2 48.5 467 18-509 2-489 (490)
5 PRK14534 cysS cysteinyl-tRNA s 100.0 2E-115 4E-120 915.1 47.0 463 18-509 2-480 (481)
6 PTZ00399 cysteinyl-tRNA-synthe 100.0 3E-115 7E-120 953.3 45.3 487 17-517 38-555 (651)
7 PRK00260 cysS cysteinyl-tRNA s 100.0 7E-114 2E-118 918.5 49.4 462 18-510 2-463 (463)
8 TIGR00435 cysS cysteinyl-tRNA 100.0 7E-113 2E-117 908.3 46.7 463 19-509 1-465 (465)
9 KOG2007 Cysteinyl-tRNA synthet 100.0 3E-114 7E-119 870.3 32.3 480 15-514 31-526 (586)
10 TIGR03447 mycothiol_MshC cyste 100.0 4E-103 1E-107 807.0 34.7 367 12-400 11-387 (411)
11 PF01406 tRNA-synt_1e: tRNA sy 100.0 2.9E-99 6E-104 741.2 23.2 299 32-330 1-300 (300)
12 PRK12418 cysteinyl-tRNA synthe 100.0 4.9E-98 1E-102 766.9 32.5 354 33-406 2-366 (384)
13 cd00672 CysRS_core catalytic c 100.0 2.4E-63 5.3E-68 475.9 21.3 213 20-321 1-213 (213)
14 COG0143 MetG Methionyl-tRNA sy 100.0 8.3E-61 1.8E-65 509.7 38.7 406 40-451 5-511 (558)
15 PRK11893 methionyl-tRNA synthe 100.0 3.5E-60 7.5E-65 516.4 35.7 398 39-451 2-475 (511)
16 PLN02224 methionine-tRNA ligas 100.0 1.6E-56 3.5E-61 487.1 37.1 402 41-451 70-545 (616)
17 PRK00133 metG methionyl-tRNA s 100.0 1.2E-55 2.6E-60 491.6 36.9 404 42-451 4-502 (673)
18 PLN02610 probable methionyl-tR 100.0 2.1E-55 4.5E-60 491.6 37.1 410 37-451 14-531 (801)
19 TIGR00398 metG methionyl-tRNA 100.0 5.2E-55 1.1E-59 476.8 37.6 401 42-450 3-501 (530)
20 PRK12267 methionyl-tRNA synthe 100.0 3.6E-55 7.8E-60 487.2 36.1 400 41-451 5-477 (648)
21 PRK12268 methionyl-tRNA synthe 100.0 1.3E-53 2.7E-58 468.5 36.5 406 41-451 4-509 (556)
22 KOG0436 Methionyl-tRNA synthet 100.0 1.9E-52 4.2E-57 413.6 29.0 390 41-438 40-509 (578)
23 cd00668 Ile_Leu_Val_MetRS_core 100.0 4.1E-52 8.9E-57 424.7 17.6 269 41-320 3-312 (312)
24 PF09334 tRNA-synt_1g: tRNA sy 100.0 9.6E-49 2.1E-53 408.6 21.7 292 42-338 1-389 (391)
25 PRK01611 argS arginyl-tRNA syn 100.0 2.1E-47 4.5E-52 413.0 26.1 362 36-440 109-504 (507)
26 cd00814 MetRS_core catalytic c 100.0 3.2E-46 7E-51 381.9 21.9 275 42-320 2-319 (319)
27 PRK13208 valS valyl-tRNA synth 100.0 9.3E-45 2E-49 412.2 30.3 405 40-451 40-705 (800)
28 TIGR00422 valS valyl-tRNA synt 100.0 9.7E-44 2.1E-48 406.7 31.0 408 40-451 35-699 (861)
29 COG0525 ValS Valyl-tRNA synthe 100.0 1.2E-43 2.6E-48 388.0 30.2 436 10-452 4-699 (877)
30 PRK05729 valS valyl-tRNA synth 100.0 3.9E-42 8.4E-47 393.3 32.3 406 40-452 38-693 (874)
31 cd00812 LeuRS_core catalytic c 100.0 6.5E-44 1.4E-48 363.8 14.7 266 44-322 6-314 (314)
32 TIGR00395 leuS_arch leucyl-tRN 100.0 1.4E-41 3.1E-46 389.5 33.8 201 236-451 573-777 (938)
33 PLN02943 aminoacyl-tRNA ligase 100.0 9.6E-41 2.1E-45 382.4 33.6 408 40-451 90-770 (958)
34 PRK14900 valS valyl-tRNA synth 100.0 6.7E-41 1.5E-45 386.3 32.2 407 39-451 49-714 (1052)
35 cd00817 ValRS_core catalytic c 100.0 4E-42 8.7E-47 359.3 18.8 276 41-320 4-382 (382)
36 PRK05743 ileS isoleucyl-tRNA s 100.0 5.8E-40 1.3E-44 375.3 29.5 408 38-451 47-769 (912)
37 PRK00390 leuS leucyl-tRNA synt 100.0 2.4E-39 5.2E-44 366.0 30.3 386 41-451 33-722 (805)
38 cd00818 IleRS_core catalytic c 100.0 4.6E-41 9.9E-46 345.8 14.7 275 40-320 3-338 (338)
39 PRK06039 ileS isoleucyl-tRNA s 100.0 2.4E-39 5.2E-44 372.9 28.9 407 40-451 43-771 (975)
40 TIGR00396 leuS_bact leucyl-tRN 100.0 5.6E-39 1.2E-43 363.6 29.2 393 38-451 27-758 (842)
41 PLN02882 aminoacyl-tRNA ligase 100.0 7E-39 1.5E-43 370.9 30.2 215 235-452 566-801 (1159)
42 PLN02843 isoleucyl-tRNA synthe 100.0 1.5E-38 3.3E-43 364.4 30.4 213 235-451 563-796 (974)
43 PLN02381 valyl-tRNA synthetase 100.0 1.1E-37 2.4E-42 359.1 31.8 408 40-451 130-871 (1066)
44 TIGR00392 ileS isoleucyl-tRNA 100.0 1.6E-37 3.4E-42 355.9 32.3 209 236-451 564-790 (861)
45 PRK13804 ileS isoleucyl-tRNA s 100.0 1.7E-37 3.6E-42 355.9 31.4 211 235-451 582-807 (961)
46 PTZ00419 valyl-tRNA synthetase 100.0 1.1E-37 2.4E-42 360.6 28.4 409 39-451 61-804 (995)
47 COG0018 ArgS Arginyl-tRNA synt 100.0 2.6E-36 5.6E-41 324.9 32.8 362 36-440 115-574 (577)
48 TIGR00456 argS arginyl-tRNA sy 100.0 1.2E-36 2.7E-41 332.7 30.1 369 26-440 98-563 (566)
49 PRK12300 leuS leucyl-tRNA synt 100.0 1.5E-36 3.2E-41 346.8 26.8 198 236-451 530-731 (897)
50 PLN02563 aminoacyl-tRNA ligase 100.0 4E-36 8.6E-41 341.2 27.3 127 38-164 108-240 (963)
51 PRK12451 arginyl-tRNA syntheta 100.0 5.8E-35 1.2E-39 318.4 33.0 358 37-440 112-559 (562)
52 KOG1247 Methionyl-tRNA synthet 100.0 5.8E-36 1.2E-40 296.3 18.7 415 30-450 5-518 (567)
53 PTZ00427 isoleucine-tRNA ligas 100.0 9.3E-35 2E-39 335.6 31.6 211 236-451 673-905 (1205)
54 COG0495 LeuS Leucyl-tRNA synth 100.0 4.3E-34 9.4E-39 314.3 29.1 402 29-451 21-732 (814)
55 PLN02286 arginine-tRNA ligase 100.0 2.1E-33 4.5E-38 306.4 33.5 354 37-440 116-573 (576)
56 COG0060 IleS Isoleucyl-tRNA sy 100.0 2.8E-34 6.1E-39 318.3 24.7 211 238-452 557-780 (933)
57 cd00674 LysRS_core_class_I cat 100.0 1.9E-32 4.2E-37 279.3 21.0 274 40-337 20-330 (353)
58 PLN02959 aminoacyl-tRNA ligase 100.0 3.4E-31 7.4E-36 306.3 30.2 204 236-450 671-877 (1084)
59 KOG0432 Valyl-tRNA synthetase 100.0 1.8E-29 3.8E-34 270.5 28.4 409 37-450 74-806 (995)
60 PRK00750 lysK lysyl-tRNA synth 100.0 1.9E-30 4.2E-35 279.0 21.2 279 40-340 24-337 (510)
61 cd00671 ArgRS_core catalytic c 100.0 7.6E-30 1.6E-34 246.0 20.3 203 39-288 1-212 (212)
62 PF00133 tRNA-synt_1: tRNA syn 100.0 1.1E-29 2.4E-34 280.0 15.3 124 41-164 26-169 (601)
63 TIGR00467 lysS_arch lysyl-tRNA 100.0 4.7E-29 1E-33 266.2 19.1 272 40-341 19-332 (515)
64 KOG0435 Leucyl-tRNA synthetase 100.0 1.1E-28 2.3E-33 257.3 20.2 369 36-407 54-748 (876)
65 KOG0433 Isoleucyl-tRNA synthet 99.9 1.2E-25 2.5E-30 236.8 27.0 211 236-450 566-795 (937)
66 PRK04156 gltX glutamyl-tRNA sy 99.9 5.5E-27 1.2E-31 250.7 15.9 260 37-331 99-404 (567)
67 cd00802 class_I_aaRS_core cata 99.9 3.6E-26 7.9E-31 206.9 13.9 142 42-287 1-143 (143)
68 PF01921 tRNA-synt_1f: tRNA sy 99.9 7.5E-25 1.6E-29 221.0 11.4 278 38-338 22-339 (360)
69 COG1384 LysS Lysyl-tRNA synthe 99.9 9.9E-24 2.1E-28 217.9 16.7 276 39-339 19-335 (521)
70 KOG4426 Arginyl-tRNA synthetas 99.9 1.1E-21 2.3E-26 196.0 25.7 357 36-440 186-653 (656)
71 PF00750 tRNA-synt_1d: tRNA sy 99.9 1.1E-22 2.5E-27 210.4 15.4 242 36-322 18-354 (354)
72 KOG0434 Isoleucyl-tRNA synthet 99.9 1.3E-20 2.9E-25 197.1 23.5 213 236-452 554-785 (1070)
73 cd07963 Anticodon_Ia_Cys Antic 99.8 2.9E-20 6.2E-25 170.7 17.1 155 323-509 2-156 (156)
74 cd09287 GluRS_non_core catalyt 99.8 9.7E-21 2.1E-25 182.7 13.6 208 43-330 4-231 (240)
75 KOG1195 Arginyl-tRNA synthetas 99.8 3.7E-17 8.1E-22 167.3 21.5 358 37-440 109-564 (567)
76 TIGR00464 gltX_bact glutamyl-t 99.7 5.2E-17 1.1E-21 173.4 17.5 248 46-328 7-311 (470)
77 PRK12558 glutamyl-tRNA synthet 99.7 4.1E-17 8.9E-22 171.2 14.2 247 46-328 8-288 (445)
78 PRK12410 glutamylglutaminyl-tR 99.7 9E-17 2E-21 167.8 16.2 245 46-327 5-281 (433)
79 PRK14895 gltX glutamyl-tRNA sy 99.7 3.1E-16 6.6E-21 166.4 18.8 244 46-327 10-287 (513)
80 TIGR00463 gltX_arch glutamyl-t 99.7 1.3E-16 2.8E-21 171.1 15.9 252 46-331 99-395 (560)
81 PRK01406 gltX glutamyl-tRNA sy 99.7 3E-16 6.5E-21 167.6 17.2 231 46-311 10-280 (476)
82 PLN03233 putative glutamate-tR 99.7 4.2E-16 9.1E-21 165.4 15.8 252 46-331 17-312 (523)
83 PLN02627 glutamyl-tRNA synthet 99.7 9.5E-16 2.1E-20 162.9 14.8 244 38-328 44-342 (535)
84 cd00418 GlxRS_core catalytic c 99.7 1.5E-15 3.2E-20 146.2 14.7 174 46-314 7-185 (230)
85 PRK05347 glutaminyl-tRNA synth 99.6 2.4E-15 5.2E-20 160.2 16.5 250 46-331 35-336 (554)
86 PRK05710 glutamyl-Q tRNA(Asp) 99.6 1.8E-15 3.9E-20 151.2 12.8 216 46-312 11-262 (299)
87 TIGR03838 queuosine_YadB gluta 99.6 2.1E-15 4.5E-20 149.1 11.6 230 46-325 6-271 (272)
88 PRK14703 glutaminyl-tRNA synth 99.6 1.4E-14 3E-19 160.8 17.8 251 46-331 37-339 (771)
89 COG0008 GlnS Glutamyl- and glu 99.6 5.3E-15 1.1E-19 156.2 13.1 246 46-327 15-299 (472)
90 cd00807 GlnRS_core catalytic c 99.6 1.5E-14 3.2E-19 139.3 14.6 203 46-330 7-229 (238)
91 PTZ00402 glutamyl-tRNA synthet 99.6 1.9E-14 4.1E-19 154.4 16.9 253 46-331 58-354 (601)
92 PLN02907 glutamate-tRNA ligase 99.6 1.5E-14 3.3E-19 160.8 16.6 252 46-331 219-514 (722)
93 PF00749 tRNA-synt_1c: tRNA sy 99.6 1.9E-14 4.2E-19 146.3 15.5 222 46-312 7-275 (314)
94 TIGR00440 glnS glutaminyl-tRNA 99.6 4E-14 8.6E-19 150.7 16.0 253 46-331 6-307 (522)
95 PTZ00437 glutaminyl-tRNA synth 99.6 8.7E-14 1.9E-18 148.1 17.2 255 37-331 49-352 (574)
96 PLN02859 glutamine-tRNA ligase 99.5 5.5E-14 1.2E-18 154.4 15.5 274 20-329 246-564 (788)
97 cd00808 GluRS_core catalytic c 99.5 1.2E-13 2.6E-18 134.1 15.8 185 46-325 7-208 (239)
98 KOG1149 Glutamyl-tRNA syntheta 99.4 1.4E-12 3E-17 131.7 14.1 249 40-328 34-330 (524)
99 KOG0437 Leucyl-tRNA synthetase 99.3 6.3E-12 1.4E-16 133.7 10.7 159 235-397 662-825 (1080)
100 cd07956 Anticodon_Ia_Arg Antic 99.1 1.6E-09 3.4E-14 99.5 12.2 140 299-440 2-153 (156)
101 PF09190 DALR_2: DALR domain; 98.5 3.6E-07 7.9E-12 70.3 7.0 57 372-440 1-57 (63)
102 cd07962 Anticodon_Ia_Val Antic 98.4 4.2E-06 9.1E-11 74.7 12.4 126 320-448 1-133 (135)
103 KOG1147 Glutamyl-tRNA syntheta 98.3 1.1E-06 2.5E-11 91.5 8.0 98 38-155 199-296 (712)
104 PF05746 DALR_1: DALR anticodo 98.3 1.6E-06 3.4E-11 75.6 7.9 104 335-440 1-116 (119)
105 cd07958 Anticodon_Ia_Leu_BEm A 98.3 9.4E-06 2E-10 70.1 11.5 114 320-448 1-115 (117)
106 cd07957 Anticodon_Ia_Met Antic 98.2 2.7E-05 5.9E-10 68.4 12.5 90 356-448 35-127 (129)
107 cd07960 Anticodon_Ia_Ile_BEm A 98.2 2.6E-05 5.6E-10 73.3 12.8 129 320-451 1-140 (180)
108 cd07959 Anticodon_Ia_Leu_AEc A 98.1 4.4E-05 9.5E-10 66.0 12.2 114 320-449 1-116 (117)
109 smart00840 DALR_2 This DALR do 98.0 9.1E-06 2E-10 60.8 5.5 54 373-437 2-55 (56)
110 PRK13354 tyrosyl-tRNA syntheta 98.0 1.9E-05 4.1E-10 83.4 9.0 72 236-312 186-258 (410)
111 TIGR00233 trpS tryptophanyl-tR 97.9 0.00028 6.1E-09 72.5 14.7 82 42-134 4-86 (328)
112 PRK12285 tryptophanyl-tRNA syn 97.8 9.6E-05 2.1E-09 76.9 10.8 86 38-135 64-150 (368)
113 cd00395 Tyr_Trp_RS_core cataly 97.8 6.4E-05 1.4E-09 75.3 8.8 76 43-123 2-80 (273)
114 cd07955 Anticodon_Ia_Cys_like 97.8 6.4E-05 1.4E-09 60.8 7.0 59 322-400 1-60 (81)
115 cd07961 Anticodon_Ia_Ile_ABEc 97.8 0.00025 5.3E-09 66.8 12.2 128 320-451 1-141 (183)
116 cd00805 TyrRS_core catalytic c 97.8 4.8E-05 1E-09 76.1 7.6 76 43-123 3-81 (269)
117 smart00836 DALR_1 DALR anticod 97.7 0.00016 3.6E-09 63.1 8.7 104 335-440 1-119 (122)
118 PRK05912 tyrosyl-tRNA syntheta 97.7 7.1E-05 1.5E-09 79.2 6.4 72 236-312 188-260 (408)
119 cd07375 Anticodon_Ia_like Anti 97.6 0.00062 1.3E-08 58.3 11.1 52 357-410 39-90 (117)
120 PRK08560 tyrosyl-tRNA syntheta 97.6 0.00026 5.7E-09 72.9 9.5 71 42-124 32-102 (329)
121 PF00579 tRNA-synt_1b: tRNA sy 97.6 0.00012 2.7E-09 74.2 6.6 86 40-135 5-93 (292)
122 cd00806 TrpRS_core catalytic c 97.6 0.00049 1.1E-08 69.2 10.8 71 43-124 2-72 (280)
123 PTZ00126 tyrosyl-tRNA syntheta 97.6 0.00042 9.2E-09 72.4 10.6 91 38-137 64-155 (383)
124 PLN02486 aminoacyl-tRNA ligase 97.5 0.0011 2.5E-08 69.1 12.8 77 37-124 70-147 (383)
125 PRK12284 tryptophanyl-tRNA syn 97.5 0.00055 1.2E-08 71.9 9.9 71 43-124 5-75 (431)
126 PRK12556 tryptophanyl-tRNA syn 97.4 0.00067 1.5E-08 69.7 9.4 73 41-124 4-76 (332)
127 PF08264 Anticodon_1: Anticodo 97.4 0.00034 7.4E-09 63.5 6.6 88 359-450 1-92 (153)
128 COG0180 TrpS Tryptophanyl-tRNA 97.4 0.0011 2.4E-08 66.9 10.7 74 40-124 5-79 (314)
129 PRK12282 tryptophanyl-tRNA syn 97.4 0.0043 9.3E-08 63.9 14.9 72 41-124 3-74 (333)
130 COG0162 TyrS Tyrosyl-tRNA synt 97.2 0.00042 9.1E-09 72.4 5.7 55 236-293 180-235 (401)
131 PRK12283 tryptophanyl-tRNA syn 97.2 0.0018 4E-08 67.4 9.7 70 42-124 4-74 (398)
132 KOG0437 Leucyl-tRNA synthetase 97.1 0.0021 4.5E-08 70.1 9.5 61 37-97 41-103 (1080)
133 PTZ00348 tyrosyl-tRNA syntheta 97.1 0.00079 1.7E-08 75.0 6.6 87 42-137 34-121 (682)
134 KOG1148 Glutaminyl-tRNA synthe 96.9 0.0028 6.1E-08 67.5 8.0 97 37-153 246-342 (764)
135 TIGR00234 tyrS tyrosyl-tRNA sy 96.8 0.0029 6.4E-08 66.3 7.5 38 41-82 31-69 (377)
136 PRK00927 tryptophanyl-tRNA syn 96.6 0.0027 5.9E-08 65.5 5.0 70 42-124 3-72 (333)
137 PLN02886 aminoacyl-tRNA ligase 96.5 0.065 1.4E-06 56.1 14.4 69 42-124 48-117 (389)
138 KOG2007 Cysteinyl-tRNA synthet 95.7 0.018 4E-07 60.5 6.1 52 462-513 525-576 (586)
139 COG1656 Uncharacterized conser 91.2 0.41 9E-06 43.5 5.3 88 67-170 18-105 (165)
140 PF01927 Mut7-C: Mut7-C RNAse 77.4 2.9 6.3E-05 37.7 3.9 32 67-100 12-43 (147)
141 PF02151 UVR: UvrB/uvrC motif; 67.2 11 0.00023 25.3 3.8 30 464-493 3-32 (36)
142 PRK01233 glyS glycyl-tRNA synt 66.2 37 0.0008 38.6 10.0 98 332-431 568-674 (682)
143 PF10009 DUF2252: Uncharacteri 65.4 22 0.00047 37.6 7.7 91 46-148 41-153 (385)
144 PRK14908 glycyl-tRNA synthetas 61.1 55 0.0012 38.7 10.4 96 332-431 893-994 (1000)
145 TIGR00211 glyS glycyl-tRNA syn 60.6 50 0.0011 37.6 9.8 98 332-431 578-684 (691)
146 KOG1610 Corticosteroid 11-beta 59.9 39 0.00084 34.4 7.8 69 51-120 176-251 (322)
147 KOG2145 Cytoplasmic tryptophan 57.7 10 0.00022 37.8 3.2 76 37-123 82-158 (397)
148 COG0751 GlyS Glycyl-tRNA synth 56.9 54 0.0012 37.0 9.0 95 334-430 579-682 (691)
149 KOG2144 Tyrosyl-tRNA synthetas 52.0 6.8 0.00015 39.0 1.1 67 40-123 35-110 (360)
150 PRK13671 hypothetical protein; 48.8 78 0.0017 32.2 8.1 69 49-123 8-95 (298)
151 PF14359 DUF4406: Domain of un 44.7 34 0.00073 28.2 4.0 33 42-79 1-33 (92)
152 PLN02413 choline-phosphate cyt 42.6 26 0.00057 35.1 3.5 40 36-84 24-63 (294)
153 PLN02200 adenylate kinase fami 40.9 79 0.0017 30.8 6.6 44 13-56 12-60 (234)
154 KOG2804 Phosphorylcholine tran 38.0 16 0.00035 36.6 1.2 40 37-85 61-100 (348)
155 cd02156 nt_trans nucleotidyl t 36.5 18 0.00039 30.3 1.2 15 45-60 4-18 (105)
156 KOG2623 Tyrosyl-tRNA synthetas 35.3 52 0.0011 34.4 4.4 45 42-90 65-112 (467)
157 COG2257 Uncharacterized homolo 34.9 1.4E+02 0.0031 24.5 5.9 61 80-147 26-87 (92)
158 KOG2805 tRNA (5-methylaminomet 34.6 81 0.0017 32.1 5.4 75 64-150 18-95 (377)
159 PF03033 Glyco_transf_28: Glyc 34.3 38 0.00083 29.3 3.0 26 55-83 9-34 (139)
160 TIGR00640 acid_CoA_mut_C methy 32.9 1.3E+02 0.0029 26.4 6.2 66 62-150 17-82 (132)
161 KOG2713 Mitochondrial tryptoph 28.8 79 0.0017 31.7 4.3 76 40-124 13-88 (347)
162 PRK09620 hypothetical protein; 28.3 82 0.0018 30.7 4.4 48 38-85 3-53 (229)
163 COG3340 PepE Peptidase E [Amin 26.6 2.2E+02 0.0048 27.5 6.7 98 42-164 4-101 (224)
164 COG3171 Uncharacterized protei 25.2 75 0.0016 27.1 2.9 57 114-170 23-87 (119)
165 PF00392 GntR: Bacterial regul 24.5 3E+02 0.0065 20.4 6.9 52 109-160 5-63 (64)
166 PTZ00308 ethanolamine-phosphat 23.8 98 0.0021 32.3 4.2 44 34-86 6-49 (353)
167 COG3286 Uncharacterized protei 22.9 1.5E+02 0.0033 27.9 4.7 86 58-155 85-176 (204)
168 PF04127 DFP: DNA / pantothena 22.3 70 0.0015 30.0 2.6 48 39-86 4-54 (185)
169 cd02072 Glm_B12_BD B12 binding 22.1 1.8E+02 0.004 25.5 5.0 66 62-150 14-79 (128)
170 cd02174 CCT CTP:phosphocholine 21.3 1.3E+02 0.0028 27.2 4.0 19 39-59 2-20 (150)
171 COG3110 Uncharacterized protei 21.3 48 0.0011 31.3 1.2 16 274-289 30-45 (216)
172 smart00874 B5 tRNA synthetase 20.9 1.4E+02 0.0031 22.7 3.7 32 484-515 21-52 (71)
173 PF02662 FlpD: Methyl-viologen 20.8 5.4E+02 0.012 22.3 7.7 74 75-149 28-124 (124)
174 KOG0909 Peptide:N-glycanase [P 20.4 1.9E+02 0.0041 30.8 5.3 51 37-87 189-250 (500)
No 1
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-130 Score=1005.03 Aligned_cols=456 Identities=49% Similarity=0.836 Sum_probs=411.5
Q ss_pred ceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH
Q 009321 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (537)
Q Consensus 18 ~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~ 97 (537)
.|+|||||||++++|.|.++++|+||+||||||+.+||||+|++|++|+++|+|+++||.|.||+||||+||||+++|++
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~ 80 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE 80 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ccceeecCCCCCCCCCCcch-h
Q 009321 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQ-R 175 (537)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~-~~~v~f~~~~~~~yg~ls~~-~ 175 (537)
.|.++.+++++|+++|++||++|||.+|+.+||+|+||++|+++|++|++||+||.. +|+|||+++++|+||+||+. .
T Consensus 81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~ 160 (464)
T COG0215 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDS 160 (464)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCC
Confidence 999999999999999999999999988999999999999999999999999999998 78999999999999999966 8
Q ss_pred chhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHH
Q 009321 176 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (537)
Q Consensus 176 l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~ 255 (537)
++++..|.+++.+..|++|.||+|||++++|+|+|+||||.||||||||||+|+..+||.++|||+||.||+||||+||+
T Consensus 161 le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 161 LEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred hhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHH
Confidence 88888999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC-CCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHH
Q 009321 256 AQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFY 334 (537)
Q Consensus 256 a~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~ 334 (537)
||++|+++ ++|++||||+|||+++|+|||||+|||+|++|+|++|+|++|||+||++|||+|++||++.|.++.+.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhh
Q 009321 335 IYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 414 (537)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~ 414 (537)
|++++.++........ .. .+.++...|.+||+||||||.|++. |+++++.+|...+.....
T Consensus 321 l~~~~~~~~~~~~~~~-------~~-----~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~~~------ 381 (464)
T COG0215 321 LYNALRRLRDLAGDAE-------LA-----DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGKSD------ 381 (464)
T ss_pred HHHHHHHHHhhccccc-------cc-----hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhccccc------
Confidence 9999887653322110 00 3456777899999999999999999 999999997766544310
Q ss_pred HHHHHHHHHHHHHHHHHHh-----hcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCChhHhHHHHH
Q 009321 415 LSLIESLRKIENEVKEVLR-----ILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRA 489 (537)
Q Consensus 415 ~~~~~~l~~~~~~l~~~l~-----vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~aD~IRd 489 (537)
...++..+..++. +||+.+. .. . ......+++|+.||++|++||++|||++||+|||
T Consensus 382 ------~~~~~~~~~~~~~~lg~~~l~~~~~-~~----~-------~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd 443 (464)
T COG0215 382 ------AKAVLSALKALLAILGLKVLGLFPQ-SG----A-------QEDESDDEEIEALIEERLEARKAKNWALADEIRD 443 (464)
T ss_pred ------hHHHHHHHHHHHHHhCchhhccccc-cc----c-------ccccchHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 1122233333334 4555443 10 0 0112257889999999999999999999999999
Q ss_pred HhHhCCCEEEecCCceEEEeC
Q 009321 490 DLTRKGIALMDMGKETIWRPC 510 (537)
Q Consensus 490 ~L~~~GI~l~D~~~Gt~W~~~ 510 (537)
+|.++||.|+|+|+||+|++.
T Consensus 444 ~L~~~Gi~leD~~~gt~w~~~ 464 (464)
T COG0215 444 ELLALGIILEDTPDGTTWRRK 464 (464)
T ss_pred HHHHCCcEEEECCCCeEEEeC
Confidence 999999999999999999973
No 2
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.6e-125 Score=1005.13 Aligned_cols=497 Identities=65% Similarity=1.105 Sum_probs=435.0
Q ss_pred CCCCceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHH
Q 009321 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR 93 (537)
Q Consensus 14 ~~~~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~ 93 (537)
...++|+|||||||++++|.|.++++|+||+|||||||++||||+|++|.+|+|+|||++.||+|.||+|+|||||||+.
T Consensus 55 ~~~~~l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~ 134 (557)
T PLN02946 55 SRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIA 134 (557)
T ss_pred CCCCceEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHH
Confidence 33457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcc
Q 009321 94 RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSG 173 (537)
Q Consensus 94 ~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~ 173 (537)
+|+++|++|++++++|++.|.++|++|||..++.+|++|+|++.|+++|++|+++|+||+++++||||+++++.||+||+
T Consensus 135 ~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~ 214 (557)
T PLN02946 135 RANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSG 214 (557)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCC
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred hhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhH
Q 009321 174 QRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (537)
Q Consensus 174 ~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~ 253 (537)
++++++..|.+++.+..|+||.||+|||.+++|+|.|+||||.||||||||||+|+.+|||.++|||+||.||+||||+|
T Consensus 215 ~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHEN 294 (557)
T PLN02946 215 RKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHEN 294 (557)
T ss_pred CChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHH
Q 009321 254 EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVF 333 (537)
Q Consensus 254 ~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~ 333 (537)
++||++|+.+.++++||+|+|||+++|+|||||+||+++++|++++|+++++|||+|++||+++++||++.|.++.+.+.
T Consensus 295 EiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~ 374 (557)
T PLN02946 295 EIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIF 374 (557)
T ss_pred hHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhh
Q 009321 334 YIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ 413 (537)
Q Consensus 334 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~ 413 (537)
++++++.++...+...............+...+..+.+.|.+||+||||+|.|++. |+++++.+|++++.... ..
T Consensus 375 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~~~~~---~~- 449 (557)
T PLN02946 375 YIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLHTRKG---KK- 449 (557)
T ss_pred HHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhhhccc---cc-
Confidence 99999999876654321100000112223345667889999999999999999999 99999999998865310 00
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCChhHhHHHHHHhHh
Q 009321 414 QLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTR 493 (537)
Q Consensus 414 ~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~aD~IRd~L~~ 493 (537)
...+...+..+...+..++.+|||.+. ..++..++.........++.+++|++||++|++||++|||++||+|||+|.+
T Consensus 450 ~~~~~~~l~~~~~~~~~~~~vLGl~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~ 528 (557)
T PLN02946 450 QEKRLESLAALEKKIRDVLSVLGLMPT-SYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAA 528 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCch-hhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 001122344556677888899999642 1111111110111111223356799999999999999999999999999999
Q ss_pred CCCEEEecCCceEEEeCCcchhh
Q 009321 494 KGIALMDMGKETIWRPCVLVEQE 516 (537)
Q Consensus 494 ~GI~l~D~~~Gt~W~~~~~~~~~ 516 (537)
+||.|+|||+||+|++..|..+|
T Consensus 529 ~Gi~l~Dt~~Gt~w~~~~~~~~~ 551 (557)
T PLN02946 529 VGIALMDSPDGTTWRPAIPLALQ 551 (557)
T ss_pred CCCEEEECCCCceEEEcCCCccc
Confidence 99999999999999998776544
No 3
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-120 Score=968.27 Aligned_cols=464 Identities=46% Similarity=0.763 Sum_probs=416.6
Q ss_pred cccCCCCCCceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhh
Q 009321 9 TVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD 88 (537)
Q Consensus 9 ~~~~~~~~~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d 88 (537)
+.|.|+..++|+|||||||++++|.|.++++|+||+||||||+++||||+|++|.+|+++|+|++.||+|.||+|+||||
T Consensus 218 ~~~~~~~~~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~D 297 (699)
T PRK14535 218 EQQRLIHNPMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDID 297 (699)
T ss_pred hhhcccccCceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccc
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ccceeecCCCCCC
Q 009321 89 DKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 167 (537)
Q Consensus 89 ~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~-~~~v~f~~~~~~~ 167 (537)
|||+.+|+++|+++++++++|++.|.++|+.|||.+++.+||+|+|++.|+++|++|+++|+||++ .|+||||+++++.
T Consensus 298 DKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~ 377 (699)
T PRK14535 298 DKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA 377 (699)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987 6799999999999
Q ss_pred CCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCc
Q 009321 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (537)
Q Consensus 168 yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~ 247 (537)
||+||+.+++++..|.+++.+.+|++|.||+|||++++|+|.|+||||.||||||||||+|+.++||.++|||+||.||+
T Consensus 378 YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLi 457 (699)
T PRK14535 378 YGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ 457 (699)
T ss_pred cccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccC
Confidence 99999999999989999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHhhccCC----------------CCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhh
Q 009321 248 FPHHENEIAQSCAACQD----------------SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 248 fpH~~~~~a~~~a~~~~----------------~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~ 311 (537)
||||+||+||++|+.+. +|++||||+|||+++|+|||||+||+|+++|+++.|+|+++|||+++
T Consensus 458 FPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLs 537 (699)
T PRK14535 458 FPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR 537 (699)
T ss_pred CCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHc
Confidence 99999999999998765 48999999999999999999999999999999999999999999999
Q ss_pred cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHH
Q 009321 312 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF 391 (537)
Q Consensus 312 ~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L 391 (537)
+||+++++||++.|.++.+.+.+++.++.++... . ..+...+..+.+.|.+||+||||+|.|++. |
T Consensus 538 shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L 603 (699)
T PRK14535 538 AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAV-L 603 (699)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHH-H
Confidence 9999999999999999999999998887654210 0 001123456788999999999999999999 9
Q ss_pred HHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 009321 392 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 471 (537)
Q Consensus 392 ~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~ 471 (537)
+++++.+|+... ..+...+..++.+|||... ...+.... . ....+..+++|++||++
T Consensus 604 ~~lvk~iN~~~~------------------~~~~~~l~~~~~vLGl~~~-~~~~~~~~---~-~~~~~~~~~~i~~Li~~ 660 (699)
T PRK14535 604 FELAGEVNKTND------------------AQLAGCLKALGGIIGLLQR-DPTEFLQG---G-AASDGLSNEEIEDLIAR 660 (699)
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHhhcCCCcc-chhhhhhc---c-cccccCCHHHHHHHHHH
Confidence 999999997531 0122345567889998542 11111110 0 00112235679999999
Q ss_pred HHHHhcCCChhHhHHHHHHhHhCCCEEEecCCceEEEe
Q 009321 472 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 472 R~~aR~~Kdf~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
|++||++|||++||+|||+|.++||.|+|||+||+|++
T Consensus 661 R~~AR~~Kdfa~AD~IRd~L~~~GI~veDt~~Gt~W~~ 698 (699)
T PRK14535 661 RKQARADKNWAESDRIRDLLNEHKIILEDNAGGTTWRR 698 (699)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCCceEee
Confidence 99999999999999999999999999999999999986
No 4
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.9e-118 Score=937.24 Aligned_cols=467 Identities=36% Similarity=0.609 Sum_probs=411.1
Q ss_pred ceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchh----------
Q 009321 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV---------- 87 (537)
Q Consensus 18 ~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~---------- 87 (537)
+|+|||||||++++|.|..+++|+||+||||||+++||||+|++|.+|+++|||+++||+|.||+||||+
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ 81 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSG 81 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCC
Q 009321 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (537)
Q Consensus 88 d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~ 167 (537)
|+||+.+|+++|++|++++++|++.|.++|++|||.+|+.+||+|+|++.|+++|++|+++|+||+++++||||+++||.
T Consensus 82 ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 161 (490)
T PRK14536 82 EDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPS 161 (490)
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCCCcchhchhhhcCCCccccccccCccccccccccc--CC-CCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecc
Q 009321 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAK--AG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (537)
Q Consensus 168 yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~--~g-~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~ 244 (537)
||+||+.+++++..|.+++.+..|+||.||+|||..+ ++ +++|+||||.||||||||||+|+.+|||.++|||+||+
T Consensus 162 YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~ 241 (490)
T PRK14536 162 YGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGV 241 (490)
T ss_pred hhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccc
Confidence 9999999999998898888877899999999999864 34 58999999999999999999999999999999999999
Q ss_pred cCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHH-cCchhhHHHHhhcCcCCCcccCHH
Q 009321 245 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 323 (537)
Q Consensus 245 Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~~ 323 (537)
||+||||+||+||++|+.+.+|+++|+|+|||+++|+|||||+||+|+++|+++. |+++++||++|++||+++++||++
T Consensus 242 DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e 321 (490)
T PRK14536 242 DHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWE 321 (490)
T ss_pred cCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHH
Confidence 9999999999999999988999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccC--C---C--CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHH
Q 009321 324 QLDSASDAVFYIYQTLQDCEVALSPFQEH--G---K--TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK 396 (537)
Q Consensus 324 ~l~~~~~~l~~l~~~~~~~~~~l~~~~~~--~---~--~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~ 396 (537)
.|.++.+.+.+|++++.++...+...... . . .......+...+..+.+.|.+||+||||||.|++. |+++++
T Consensus 322 ~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~ 400 (490)
T PRK14536 322 ALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVK 400 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHH
Confidence 99999999999999988875433211000 0 0 00000112234566788999999999999999999 999999
Q ss_pred HHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 009321 397 FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 476 (537)
Q Consensus 397 ~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR 476 (537)
.+|.- . ..+...+..++.+|||.......+... . . ......+++|++||++|++||
T Consensus 401 ~~n~~----~---------------~~~~~~~~~~~~vLGl~~~~~~~~~~~---~-~-~~~~~~~~~i~~li~~R~~aR 456 (490)
T PRK14536 401 DTSVP----P---------------SLCLSVLQAMDTVLGLGLIQEATASLS---A-Q-VPAGPSEEEIGQLIEARAHAR 456 (490)
T ss_pred Hhhhh----H---------------HHHHHHHHHHHhhcCcccccchhhhhh---h-c-ccccCCHHHHHHHHHHHHHHH
Confidence 98851 0 113455677788999842101111100 0 0 001122457999999999999
Q ss_pred cCCChhHhHHHHHHhHhCCCEEEecCCceEEEe
Q 009321 477 KNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 477 ~~Kdf~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
++|||++||+||++|.++||.|+|||+||+|++
T Consensus 457 ~~kdf~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 489 (490)
T PRK14536 457 QTKDFPLADEIRDKLKAEGIELEDTHLGTIWKR 489 (490)
T ss_pred HhCCHHHHHHHHHHHHHCCCEEEEcCCCceEEe
Confidence 999999999999999999999999999999986
No 5
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-115 Score=915.09 Aligned_cols=463 Identities=31% Similarity=0.517 Sum_probs=403.5
Q ss_pred ceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchh----------
Q 009321 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV---------- 87 (537)
Q Consensus 18 ~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~---------- 87 (537)
+|+|||||||++++|.|. ++|+||+||||||+++||||+|++|.+|+++|+|++.||+|.||+||||+
T Consensus 2 ~l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~g 79 (481)
T PRK14534 2 LLKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDG 79 (481)
T ss_pred ceEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCC
Confidence 599999999999999996 79999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCC
Q 009321 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (537)
Q Consensus 88 d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~ 167 (537)
||||+.+|+++|+++++++++|++.|.++|++|||.+++.+|++|+|++.|+++|++|+++|+||+++++||||+.+++.
T Consensus 80 ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 159 (481)
T PRK14534 80 EDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKS 159 (481)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhchhhh--cCCCccccccccCcccccccccc---cCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEe
Q 009321 168 YGRLSGQRLENNR--AGERVAVDSRKRNPADFALWKAA---KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 168 yg~ls~~~l~~~~--~g~~~~~~~~k~~~~df~lwk~~---~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~ 242 (537)
||+||+.+++++. .|.+++.+..|+||.||+|||.. ++++++|++|||.||||||||||+|+.++||.++|||+|
T Consensus 160 YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~G 239 (481)
T PRK14534 160 YGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLG 239 (481)
T ss_pred hhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEec
Confidence 9999999999976 68888888889999999999975 788999999999999999999999999999999999999
Q ss_pred cccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHH-cCchhhHHHHhhcCcCCCcccC
Q 009321 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYS 321 (537)
Q Consensus 243 G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs 321 (537)
|+||+||||+||+||++|+.+.+++++|+|+|||+++|+|||||+||+++++|++++ |+++++|||+|++||++|++||
T Consensus 240 G~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs 319 (481)
T PRK14534 240 GVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFT 319 (481)
T ss_pred ccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHH
Q 009321 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 322 ~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
++.|.++.+.+.++++++.++...+............+.........+.+.|.+||+||||+|.|++. |+++++.+|..
T Consensus 320 ~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~~ 398 (481)
T PRK14534 320 FNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHh
Confidence 99999999999999988876644332110000000000000012245667999999999999999999 99999999974
Q ss_pred HhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCh
Q 009321 402 LNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDF 481 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf 481 (537)
. .. ... +...+..++. ||+... .. ..+. . .....+++|++||++|++||++|||
T Consensus 399 ~--~~----------~~~----~~~~~~~~~~-lg~~~~-~~----~~~~---~-~~~~~~~~i~~li~~R~~aR~~Kd~ 452 (481)
T PRK14534 399 F--LS----------KLR----LAFKFDEVLS-LGLREE-IL----REIE---N-HRIVIDDNMKSLIEERRLAKCEKDF 452 (481)
T ss_pred h--hh----------HHH----HHHHHHHHHh-CCCCcc-cc----hhhc---c-ccccCHHHHHHHHHHHHHHHHhCCh
Confidence 1 00 011 1223455555 887321 00 0000 0 0112356799999999999999999
Q ss_pred hHhHHHHHHhHhCCCEEEecCCceEEEe
Q 009321 482 SKSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 482 ~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
++||+||++|.++||.|+|||+||+|++
T Consensus 453 ~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 480 (481)
T PRK14534 453 KRADEIREYFASKGFVLIDTEEGTKVKR 480 (481)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCEEEe
Confidence 9999999999999999999999999986
No 6
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=3.1e-115 Score=953.31 Aligned_cols=487 Identities=36% Similarity=0.584 Sum_probs=429.2
Q ss_pred CceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH-HCCCceEEECCcchhhHHHHHHH
Q 009321 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDKIIRRA 95 (537)
Q Consensus 17 ~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr-~~G~~V~~v~~idd~d~ki~~~a 95 (537)
++|+|||||||++++|.|.++++|+||+||||||+.+||||||++|.+|+|+|+|+ ++||+|.||+|||||||||+.+|
T Consensus 38 ~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A 117 (651)
T PTZ00399 38 TGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRA 117 (651)
T ss_pred CceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHcCCC-hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCC----CCCC
Q 009321 96 NDLGEN-PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----NYGR 170 (537)
Q Consensus 96 ~~~g~~-~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~----~yg~ 170 (537)
+++|++ +.+++++|++.|.++|+.|||.+|+.++|+|+|++.|+++|++|+++|+||+++|+|||++++|+ .||+
T Consensus 118 ~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~ 197 (651)
T PTZ00399 118 REEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPK 197 (651)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHh
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred Ccc---hhchhhhcCCC-c-cccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEeccc
Q 009321 171 LSG---QRLENNRAGER-V-AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (537)
Q Consensus 171 ls~---~~l~~~~~g~~-~-~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~D 245 (537)
|++ .+++.+..|++ + +.+..|++|.||+|||.+++|+|.|+||||.||||||||||+|+..+||.++|||+||.|
T Consensus 198 L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~D 277 (651)
T PTZ00399 198 LEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGID 277 (651)
T ss_pred hChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCC
Confidence 985 44455556665 5 344579999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHH
Q 009321 246 LIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQ 324 (537)
Q Consensus 246 l~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~ 324 (537)
|+||||+||+||++|+++. +|+++|+|+|||+++|+|||||+||+|+|+|+|+.|++|++|||||+.+|+++++||++.
T Consensus 278 L~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~ 357 (651)
T PTZ00399 278 LKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDES 357 (651)
T ss_pred CCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccC--CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHH
Q 009321 325 LDSASDAVFYIYQTLQDCEVALSPFQEH--GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 402 (537)
Q Consensus 325 l~~~~~~l~~l~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~ 402 (537)
+.++.+...++.+.+.++.+.+...... ....+.+.+++..+..+.+.|.++|+|+|++|.|++. |++|++.+|+|+
T Consensus 358 l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv~~~N~yi 436 (651)
T PTZ00399 358 MDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA-LQKLISATNTYL 436 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHH
Confidence 9999998888888888877665432110 0112346778888999999999999899999999999 999999999999
Q ss_pred hhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc----C
Q 009321 403 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARK----N 478 (537)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~----~ 478 (537)
+.. ...++.++.++..+|..++.||||.+. ...+ ...+.... .......|+.|++.|+.+|+ +
T Consensus 437 ~~~--------~~~~~~ll~~v~~~l~~~l~ILGl~~~--~~m~-~~~~~~~~--~~~~~~~i~~l~~~R~~~R~~a~~~ 503 (651)
T PTZ00399 437 NSG--------EQPSAPLLRSVAQYVTKILSIFGLVEG--SDGL-GSQGQNST--SENFKPLLEALLRFRDEVRDAAKAE 503 (651)
T ss_pred hcc--------ccchHHHHHHHHHHHHHHHhcccCCcc--hhhc-cccccccc--hhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 631 112455667788899999999999643 1111 00000000 01123568899999999993 5
Q ss_pred -----------CChhHhHHHHH-HhHhCCCEEEecCCc-eEEEeCCcchhhh
Q 009321 479 -----------KDFSKSDQIRA-DLTRKGIALMDMGKE-TIWRPCVLVEQEQ 517 (537)
Q Consensus 479 -----------Kdf~~aD~IRd-~L~~~GI~l~D~~~G-t~W~~~~~~~~~~ 517 (537)
|+|++||+||| .|.++||.|+|+++| |+|++.+|.++++
T Consensus 504 ~~~~~~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~ 555 (651)
T PTZ00399 504 MKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQR 555 (651)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHH
Confidence 88999999999 599999999999999 7999999888554
No 7
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=6.9e-114 Score=918.49 Aligned_cols=462 Identities=50% Similarity=0.846 Sum_probs=424.0
Q ss_pred ceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH
Q 009321 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (537)
Q Consensus 18 ~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~ 97 (537)
+|+|||||||++++|.|..+++|+||+|||||||++||||+|++|.+|+++|+||+.||+|.||+|+||+|+||+.+|++
T Consensus 2 ~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~ 81 (463)
T PRK00260 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANE 81 (463)
T ss_pred ceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhch
Q 009321 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE 177 (537)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~ 177 (537)
+|++|++++++|++.|.++|++|||..++.++|+|+|++.+++++++|+++|+||+++++||||++++++||+||+.+++
T Consensus 82 ~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~ 161 (463)
T PRK00260 82 EGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLD 161 (463)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHH
Confidence 99999999999999999999999997789999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH
Q 009321 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~ 257 (537)
++..|.+++.+.+|++|.||+|||.+++|++.|++|||.||||||||||+|+.++||.++|||+||+||+||||+|++||
T Consensus 162 ~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaq 241 (463)
T PRK00260 162 ELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241 (463)
T ss_pred HHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHH
Confidence 98889888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHH
Q 009321 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (537)
Q Consensus 258 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~ 337 (537)
++++++.||+++|+|+|||.++|+|||||+||+|++.|++++|+||++|||+++++|+++++|+++.+.++.+.+.++++
T Consensus 242 s~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~ 321 (463)
T PRK00260 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYN 321 (463)
T ss_pred HHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHH
Q 009321 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (537)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~ 417 (537)
++.++.. ...+.++...+..+.+.|.+||+||||+|.|++. |++|++.+|++++...
T Consensus 322 ~~~~~~~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~~~----------- 378 (463)
T PRK00260 322 ALAETAL-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALETKD----------- 378 (463)
T ss_pred HHHHhhh-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhccc-----------
Confidence 8876641 1234677788889999999999889999999999 9999999999986531
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCChhHhHHHHHHhHhCCCE
Q 009321 418 IESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497 (537)
Q Consensus 418 ~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~aD~IRd~L~~~GI~ 497 (537)
...+..+...|..++.+|||... ...... .......+++|++||++|++||++|||++||+|||+|.++||.
T Consensus 379 ~~~~~~~~~~~~~~~~ilG~~~~--~~~~~~------~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~ 450 (463)
T PRK00260 379 KEAAAALAALLRALADVLGLEQD--EEALFE------AAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIV 450 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCCch--hhhhhh------cccccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcE
Confidence 11244566778888999999532 110000 0011234667999999999999999999999999999999999
Q ss_pred EEecCCceEEEeC
Q 009321 498 LMDMGKETIWRPC 510 (537)
Q Consensus 498 l~D~~~Gt~W~~~ 510 (537)
|+|+|+||+|++.
T Consensus 451 v~D~~~G~~w~~~ 463 (463)
T PRK00260 451 LEDTPDGTTWRRK 463 (463)
T ss_pred EEEcCCCceEEeC
Confidence 9999999999863
No 8
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=7.2e-113 Score=908.30 Aligned_cols=463 Identities=48% Similarity=0.803 Sum_probs=411.5
Q ss_pred eeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHc
Q 009321 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (537)
Q Consensus 19 l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~ 98 (537)
|+|||||||++++|.|..+++|+||+|||||||++||||+|++|.+|+++|+||++||+|.||+|+||+|+||+.+|+++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeec-cceeecCCCCCCCCCCcchhch
Q 009321 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLE 177 (537)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~-~~v~f~~~~~~~yg~ls~~~l~ 177 (537)
|++|++++++|.+.|.++|++|||.+++.++|+|+|++.++++|++|+++|+||+++ ++||||++++|.||+||++.++
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~ 160 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLD 160 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHH
Confidence 999999999999999999999999987888999999999999999999999999998 9999999999999999999999
Q ss_pred hhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH
Q 009321 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~ 257 (537)
++..|.+++.+.+|++|.||+|||.+++|+++|++|||.||||||||||+|+.++||.++|||+||+||+||||+|++||
T Consensus 161 ~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aq 240 (465)
T TIGR00435 161 QLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240 (465)
T ss_pred HHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHH
Confidence 98889998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHH
Q 009321 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (537)
Q Consensus 258 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~ 337 (537)
++|+++++|+++|+|+|||+++|+|||||+||+|+++|+++.|+|+++|||+++++|+++++||++.|.++.+.+.+|++
T Consensus 241 s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~ 320 (465)
T TIGR00435 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYK 320 (465)
T ss_pred HHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHH-HHHhhhcccCchhhhHH
Q 009321 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQQQLS 416 (537)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N-~~~~~~~~~~~~~~~~~ 416 (537)
++.++...+.... . ...........+.+.|.+||+||||+|.|++. |+++++.+| ..++.
T Consensus 321 ~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~------------ 381 (465)
T TIGR00435 321 ALRVLDTTLAYSG----N--QSLNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSINLTFVSK------------ 381 (465)
T ss_pred HHHHHHhhhcccc----c--cccccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhhhhhcch------------
Confidence 9887754332110 0 00001112345678899999999999999999 999999999 43311
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCChhHhHHHHHHhHhCCC
Q 009321 417 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGI 496 (537)
Q Consensus 417 ~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~aD~IRd~L~~~GI 496 (537)
..+..+...+..++.+|||+..... +.. + ... ......+|++||++|++||++|||++||+||++|.++||
T Consensus 382 --~~~~~~~~~~~~l~~~lg~~~~~~~-~~~-~---~~~--~~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi 452 (465)
T TIGR00435 382 --ADAALLIEHLIFLESRLGLLLGLPS-KPV-Q---AGS--NDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGI 452 (465)
T ss_pred --HHHHHHHHHHHHHHHhcccCccccc-hhc-c---ccc--ccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCC
Confidence 0123355667778889998521010 000 0 000 001124699999999999999999999999999999999
Q ss_pred EEEecCCceEEEe
Q 009321 497 ALMDMGKETIWRP 509 (537)
Q Consensus 497 ~l~D~~~Gt~W~~ 509 (537)
.|+|+|+||+|++
T Consensus 453 ~~~D~~~gt~w~~ 465 (465)
T TIGR00435 453 VLEDTPQGTTWRR 465 (465)
T ss_pred EEEECCCCceeeC
Confidence 9999999999974
No 9
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-114 Score=870.30 Aligned_cols=480 Identities=44% Similarity=0.669 Sum_probs=406.6
Q ss_pred CCCceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH-HCCCceEEECCcchhhHHHHH
Q 009321 15 MDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDKIIR 93 (537)
Q Consensus 15 ~~~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr-~~G~~V~~v~~idd~d~ki~~ 93 (537)
..++|+|||||||+|++|.|.++++|+||+||||||+..||||||+||.+|+|+|+|+ ++||+|.||+||||+|||||.
T Consensus 31 ~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~ 110 (586)
T KOG2007|consen 31 QPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIK 110 (586)
T ss_pred CCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHH
Confidence 4557999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHH-----HcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCC-
Q 009321 94 RAN-----DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN- 167 (537)
Q Consensus 94 ~a~-----~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~- 167 (537)
||+ +.+.++.+.-..|+++|.+||.+|||.+|++.+|+|+|+++|+.+|++++++|++|..+|+||||+.+++.
T Consensus 111 RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~ 190 (586)
T KOG2007|consen 111 RARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHS 190 (586)
T ss_pred HhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecccccch
Confidence 998 23444444434688999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCc
Q 009321 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (537)
Q Consensus 168 yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~ 247 (537)
||+|+++. +.+..|+.+..+..|++|.||+|||++|+|+|+|++|||.||||||||||+|++.+||..+|||+||.||.
T Consensus 191 YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~ 269 (586)
T KOG2007|consen 191 YGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLA 269 (586)
T ss_pred hhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCccccc
Confidence 99999744 66667777666778999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHH
Q 009321 248 FPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 326 (537)
Q Consensus 248 fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~ 326 (537)
||||+||+||++|++.. +|++||+|+|||+++|+|||||++||||++|+|+.|+|++||++||+.+|+++++||.+.|.
T Consensus 270 FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~ 349 (586)
T KOG2007|consen 270 FPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTME 349 (586)
T ss_pred CCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHH
Confidence 99999999999999865 69999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhc
Q 009321 327 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (537)
Q Consensus 327 ~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~ 406 (537)
.+.+....+.+++..+..+.+...+.....+.+.++...+....++|+.|++|+|+||.++.. +.+++...|.|+....
T Consensus 350 ~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~-~~~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 350 QALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA-IRELVSQGNAYIRESG 428 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-HHHHHhhhhHHHHHhc
Confidence 877643333333333333333221111224456788889999999999999999999999999 9999999999997654
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHH----HHHHhcCCC--
Q 009321 407 KKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE----RAAARKNKD-- 480 (537)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~----R~~aR~~Kd-- 480 (537)
...+..++.++..++..++.++|+......+.+ . .+. ....+..|.+. |+.||+.+-
T Consensus 429 -------~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~--------~-e~~-~m~~v~~L~~fr~~vRe~a~~~~~~~ 491 (586)
T KOG2007|consen 429 -------ERPNSALLKAIASYITKLLKIFGLSEGKGQQYV--------L-EAT-VMPYVQSLSEFREKVREVAREKKVPE 491 (586)
T ss_pred -------cccchHHHHHHHHHHHHHHHHhCCCcccccccc--------c-ccc-hhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 112346678899999999999998642111000 0 000 11234445544 455554443
Q ss_pred -hhHhHHHHHH-hHhCCCEEEecCCceEEEeCCcch
Q 009321 481 -FSKSDQIRAD-LTRKGIALMDMGKETIWRPCVLVE 514 (537)
Q Consensus 481 -f~~aD~IRd~-L~~~GI~l~D~~~Gt~W~~~~~~~ 514 (537)
.++||.|||. |.++|+.|+|.+ |++|.+.+-.+
T Consensus 492 iL~l~d~lR~~~l~~~g~~led~~-g~~lvk~v~~e 526 (586)
T KOG2007|consen 492 ILELCDTLRDSDLLELGVRLEDRK-GSTLVKAVDRE 526 (586)
T ss_pred HHHHhHHHHHhhHHHhhhHHHhCC-chHHHHHhhhH
Confidence 5899999987 999999999999 88887776555
No 10
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=4.4e-103 Score=807.01 Aligned_cols=367 Identities=36% Similarity=0.619 Sum_probs=342.8
Q ss_pred CCCCCCceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHH
Q 009321 12 APKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI 91 (537)
Q Consensus 12 ~~~~~~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki 91 (537)
.|...++|+|||||||++++|.| +++|+||+||||||+++||||+|++|.+|+++||||+.||+|.||+|+|||||||
T Consensus 11 ~~~~~~~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKI 88 (411)
T TIGR03447 11 LPGTGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPL 88 (411)
T ss_pred CCCCCCceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHH
Confidence 34556689999999999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeecc----ceeecCCCCCC
Q 009321 92 IRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPN 167 (537)
Q Consensus 92 ~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~----~v~f~~~~~~~ 167 (537)
+.+|+++|+++++++++|+.+|.++|+.|||.+++.++|+|+|++.|+++|++|+++|+||++++ +|||++++++.
T Consensus 89 i~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~ 168 (411)
T TIGR03447 89 FERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQ 168 (411)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhc
Confidence 99999999999999999999999999999999899999999999999999999999999999876 89999999999
Q ss_pred CCCCcchhchhhhc--CCC-ccccc-cccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEec
Q 009321 168 YGRLSGQRLENNRA--GER-VAVDS-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (537)
Q Consensus 168 yg~ls~~~l~~~~~--g~~-~~~~~-~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G 243 (537)
||+||+.+++++.. +.+ ++.+. .|++|.||+|||.+++|+|.|+||||.||||||||||+|+.++||.++|||+||
T Consensus 169 YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG 248 (411)
T TIGR03447 169 FGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGG 248 (411)
T ss_pred cccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCc
Confidence 99999999998875 454 66544 599999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHH-cCchhhHHHHhhcCcCCCcccC
Q 009321 244 IDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYS 321 (537)
Q Consensus 244 ~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs 321 (537)
.||+||||+|++||++|+.++ +|+++|+|+|+|.++|+|||||+||+|+++++++. ++|+++|||++++||++|++||
T Consensus 249 ~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs 328 (411)
T TIGR03447 249 SDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWT 328 (411)
T ss_pred ccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccC
Confidence 999999999999999999887 99999999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHH
Q 009321 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (537)
Q Consensus 322 ~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~ 400 (537)
++.|.++.+.+.+|++++.++. . . .+..+...|.+||+||||+|.|++. |+++++.+|.
T Consensus 329 ~e~l~~a~~~l~rl~~~~~~~~------------~---~----~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~n~ 387 (411)
T TIGR03447 329 DAVLAEAEARLARWRAALAATD------------A---P----DATDLIARLRQHLANDLDTPAALAA-VDNWAAAALS 387 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHh
Confidence 9999999999998888775421 0 0 1234567899999999999999999 9999998886
No 11
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=2.9e-99 Score=741.24 Aligned_cols=299 Identities=60% Similarity=1.048 Sum_probs=259.5
Q ss_pred cccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHH
Q 009321 32 FTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (537)
Q Consensus 32 ~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~ 111 (537)
|+|.++++|+||+||||||+.+||||+|++|.+|+|+|+|++.||+|.||+||||+||||+.+|+++|+++.+++++|++
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeec-cceeecCCCCCCCCCCcchhchhhhcCCCcccccc
Q 009321 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSR 190 (537)
Q Consensus 112 ~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~-~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~ 190 (537)
+|.++|++|||.+|+.+||+|+||++|+++|++|+++|+||++. ++|||+++++++||+||+.+++++..|.+++.+..
T Consensus 81 ~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~ 160 (300)
T PF01406_consen 81 EFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYE 160 (300)
T ss_dssp HHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TT
T ss_pred HHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccc
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999988888888888
Q ss_pred ccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEE
Q 009321 191 KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 191 k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~ 270 (537)
|++|.||+|||.+++|++.|++|||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|+.+++|+++|
T Consensus 161 K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W 240 (300)
T PF01406_consen 161 KRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYW 240 (300)
T ss_dssp SSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEE
T ss_pred cCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHH
Q 009321 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 330 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~ 330 (537)
||+|||+++|+|||||+||+++++|++++|+|+++||+||++||+++++||++.|.++.|
T Consensus 241 ~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 241 MHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 12
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.9e-98 Score=766.89 Aligned_cols=354 Identities=36% Similarity=0.599 Sum_probs=329.0
Q ss_pred ccCCCC-cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHH
Q 009321 33 TPIVRG-KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (537)
Q Consensus 33 ~p~~~~-~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~ 111 (537)
.|+.|| +|+||+||||||+++||||+|++|.+|+++|+||+.||+|.||+|+||||+||+.+|+++|+++++++++|++
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 577788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeecc----ceeecCCCCCCCCCCcchhchhhhc--CCC-
Q 009321 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER- 184 (537)
Q Consensus 112 ~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~----~v~f~~~~~~~yg~ls~~~l~~~~~--g~~- 184 (537)
.|.++|+.|||..++.+||+|+|++.|+++|++|+++|+||++++ +|||+++++|.||+||+.+++++.. +.+
T Consensus 82 ~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~ 161 (384)
T PRK12418 82 LFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERG 161 (384)
T ss_pred HHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccc
Confidence 999999999997789999999999999999999999999999988 8999999999999999999988875 555
Q ss_pred ccccc-cccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccC
Q 009321 185 VAVDS-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263 (537)
Q Consensus 185 ~~~~~-~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~ 263 (537)
++.+. .|++|.||+|||.+++|+|.|+||||.||||||||||+|+.++||.++|||+||.||+||||+|++||++|+.+
T Consensus 162 ~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g 241 (384)
T PRK12418 162 GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATG 241 (384)
T ss_pred cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcC
Confidence 45533 59999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHH-cCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHH
Q 009321 264 D-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQD 341 (537)
Q Consensus 264 ~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~ 341 (537)
+ +|+++|+|+|+|.++|+|||||+||+|++.++++. ++|+++|||+|+++|+++++||++.|.++.+.+.++++++.+
T Consensus 242 ~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~ 321 (384)
T PRK12418 242 ERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAAL 321 (384)
T ss_pred CCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 6 99999999999999999999999999999999874 888899999999999999999999999999999988887654
Q ss_pred HHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhc
Q 009321 342 CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (537)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~ 406 (537)
.. . . .+.++.+.|.+||+||||+|.|++. |+++++.+|.|....+
T Consensus 322 ~~------------~---~----~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 322 PA------------G---P----DAADVVARVRAALADDLDTPGALAA-VDGWATDALEGGGDDA 366 (384)
T ss_pred cc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhccCCCc
Confidence 20 0 0 2344678899999999999999999 9999999999986543
No 13
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.4e-63 Score=475.92 Aligned_cols=213 Identities=57% Similarity=0.990 Sum_probs=209.1
Q ss_pred eeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcC
Q 009321 20 KIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLG 99 (537)
Q Consensus 20 ~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g 99 (537)
+||||+||++++|.|..++++++|+|||||||++||||+|++|.+|+++||+|++|++|.|++|+||+|+||+.+|+++|
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g 80 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG 80 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhh
Q 009321 100 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENN 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~ 179 (537)
++|+++++.|.+.|.++++.|||++|+.++|+
T Consensus 81 ~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------------------ 112 (213)
T cd00672 81 LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------------------ 112 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee------------------------------------------------
Confidence 99999999999999999999999988999998
Q ss_pred hcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHh
Q 009321 180 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (537)
Q Consensus 180 ~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~ 259 (537)
||||||+|+.++||.++|||+||+||+||||+|+++|+.
T Consensus 113 -----------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 -----------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred -----------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccC
Q 009321 260 AACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321 (537)
Q Consensus 260 a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs 321 (537)
|+.+.+++++|+|+|+|.++|+|||||+||+|++.|++++|++|++|||+++.+|+++++|+
T Consensus 152 a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 152 AATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 99888999999999999999999999999999999999999999999999999999999996
No 14
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-61 Score=509.71 Aligned_cols=406 Identities=20% Similarity=0.208 Sum_probs=323.7
Q ss_pred ceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 40 VGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 40 v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
.++||++|.|| |++||||++++|.+|+++||+|++|++|.||+|+|+||+||..+|+++|++|++++++|++.|.+++
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~ 84 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELF 84 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 46888888777 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCC--------------
Q 009321 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYG-------------- 169 (537)
Q Consensus 118 ~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg-------------- 169 (537)
+.|||+ +|.|.||| +|.+.+++++++|.++|++|.+..+++||+++ ||.||
T Consensus 85 ~~l~Is-fD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~ 163 (558)
T COG0143 85 KALNIS-FDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGR 163 (558)
T ss_pred HHhCCc-ccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccC
Confidence 999999 69999998 79999999999999999999999999999985 67666
Q ss_pred CCcchhchhh---hcCCCccccc------------------cccCcccccccccc--------cCC----CCcc-ccCCC
Q 009321 170 RLSGQRLENN---RAGERVAVDS------------------RKRNPADFALWKAA--------KAG----EPSW-DSPWG 215 (537)
Q Consensus 170 ~ls~~~l~~~---~~g~~~~~~~------------------~k~~~~df~lwk~~--------~~g----~~~w-~~~wG 215 (537)
.+++..+... .+|.+.+... ++.+| ||...... +.| .+++ +..||
T Consensus 164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred cCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 2444443222 2354432211 12333 44322111 123 3677 67899
Q ss_pred CCCCc--------hhhhHHHH---------------HHhhcCC--CeeEEEecccCcCcchhHHHHHHhhccCCCCceEE
Q 009321 216 PGRPG--------WHIECSAM---------------SAHYLSS--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 216 ~g~Pg--------W~iecs~~---------------~~~~~g~--~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~ 270 (537)
++.|| |+.+...+ ..++|.. .-.+|++|+|++.||+++|||++++++.+.|.++
T Consensus 243 ipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i- 321 (558)
T COG0143 243 IPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRI- 321 (558)
T ss_pred ccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEE-
Confidence 99997 87664222 1234422 2349999999999999999999999988877777
Q ss_pred EEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcC
Q 009321 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALS 347 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~ 347 (537)
+.|||++++|+|||||+||+|++.++++.|++|++|||+++. +..+|.+||++.+.+..|. .+.+-|.++|..+...
T Consensus 322 ~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~ 401 (558)
T COG0143 322 FAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFIN 401 (558)
T ss_pred EeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999997 9999999999999998875 3344455555556555
Q ss_pred ccccCCCC------CCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhh-hHHHHH-
Q 009321 348 PFQEHGKT------ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIE- 419 (537)
Q Consensus 348 ~~~~~~~~------~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~-~~~~~~- 419 (537)
+...+..+ .+.+++++..+.++...+.++| +.+.++.|+.. +++|++..|+|++..+||...++ .++++.
T Consensus 402 k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~-i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~ 479 (558)
T COG0143 402 KYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE-IMALASRANKYIDEQAPWKLAKEDKRERLAT 479 (558)
T ss_pred hccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHhhcCCCchhhccCcHHHHHH
Confidence 44332211 1355678889999999999999 99999999999 99999999999999999987443 244544
Q ss_pred HHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 420 SLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 420 ~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+..+++.++.+..+|. ++|. ++++++.+++
T Consensus 480 vl~~~~~~~r~la~ll~P~mP~-~a~ki~~~L~ 511 (558)
T COG0143 480 VLYLALELVRVLAILLYPFMPE-TAEKIWDQLG 511 (558)
T ss_pred HHHHHHHHHHHHHHHhcCcCcc-hHHHHHHHhC
Confidence 45666667777777775 8887 6777777764
No 15
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.5e-60 Score=516.39 Aligned_cols=398 Identities=21% Similarity=0.250 Sum_probs=310.3
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
+..|.+++|||||.+||||+|++|.+|+++|++|++|++|.||+|+||+|+||+.+|+++|+++.++|++|...|.++|+
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 81 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWE 81 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeccceeecCCC---------------CCCCCC-----------
Q 009321 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------------SPNYGR----------- 170 (537)
Q Consensus 119 ~L~i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~---------------~~~yg~----------- 170 (537)
+|||. +|.++++++ |++.+++++.+|.++|++|++.+++|||+.| |..||.
T Consensus 82 ~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f 160 (511)
T PRK11893 82 ALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYF 160 (511)
T ss_pred HhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEE
Confidence 99998 678888874 9999999999999999999999999999986 444553
Q ss_pred --Ccc--hhchhhhcC--CCccccc--------cccCcccccccccccCCCCccccCCCCCCCc--------hhh-----
Q 009321 171 --LSG--QRLENNRAG--ERVAVDS--------RKRNPADFALWKAAKAGEPSWDSPWGPGRPG--------WHI----- 223 (537)
Q Consensus 171 --ls~--~~l~~~~~g--~~~~~~~--------~k~~~~df~lwk~~~~g~~~w~~~wG~g~Pg--------W~i----- 223 (537)
|+. ..+.+...+ ..+..+. .+++..||++|+. +..||.+.|+ |+.
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~~~WGipiP~~~~~~~~vWfda~~~y 232 (511)
T PRK11893 161 FRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------NFDWGIPVPGDPKHVIYVWFDALTNY 232 (511)
T ss_pred EEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------CCCCCccCCCCCCceEEEEecCcHHH
Confidence 111 111111111 1111111 1223456666651 3456666664 422
Q ss_pred --------hHHHH---HHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCccc
Q 009321 224 --------ECSAM---SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFT 292 (537)
Q Consensus 224 --------ecs~~---~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~ 292 (537)
+|++| ...+| +.|+|++|+|++||||++++||+.+++.+ +++.|+|||||+++|+|||||+||+|+
T Consensus 233 ~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~-~p~~~~~~g~v~~~G~KMSKS~GN~i~ 309 (511)
T PRK11893 233 LTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLP-LPKRVFAHGFLTLDGEKMSKSLGNVID 309 (511)
T ss_pred HhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCC-CCCEEEeeccEEECCeeecccCCcEEc
Confidence 35544 23345 67999999999999999999999998544 447789999999999999999999999
Q ss_pred HHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCCCCCChHHHH
Q 009321 293 IRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPAAED 364 (537)
Q Consensus 293 ~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~ 364 (537)
+.|++++||+|++|||+++. +++++++||++.+..+.+. ...+++.+.|+.+.+.+.... ....+.+++++.
T Consensus 310 ~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 389 (511)
T PRK11893 310 PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLE 389 (511)
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHH
Confidence 99999999999999999997 8899999999999877653 235666666665544322110 111345678889
Q ss_pred HHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhh-HHHHHHHHHHHHHHHHHHhhcc-cCCCCC
Q 009321 365 CINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGA 442 (537)
Q Consensus 365 ~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~l~vLG-i~~~~~ 442 (537)
.+.++.+.+.++| ++++++.|+.. |++|++.+|+|++..++|...+.+ ..+...+..+...++.+..+|. |+|. .
T Consensus 390 ~l~~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~-~ 466 (511)
T PRK11893 390 AAAALLERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPE-L 466 (511)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccch-H
Confidence 9999999999999 99999999999 999999999999999988642222 2223344556666777777775 8887 6
Q ss_pred hHHHHHHHH
Q 009321 443 YSEVLQQLK 451 (537)
Q Consensus 443 ~~~~~~~~~ 451 (537)
++++|+.++
T Consensus 467 ae~i~~~L~ 475 (511)
T PRK11893 467 AAKILDQLG 475 (511)
T ss_pred HHHHHHHhC
Confidence 777877763
No 16
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.6e-56 Score=487.06 Aligned_cols=402 Identities=19% Similarity=0.194 Sum_probs=303.8
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
.+++++|.|| |++||||+++++.+|+++||+|++|++|.|++|+||||+||+.+|.++|++|.++|++|.+.|.+.++
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 4777776666 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhch----hhhcCCCccccc---
Q 009321 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVDS--- 189 (537)
Q Consensus 119 ~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~----~~~~g~~~~~~~--- 189 (537)
.|||+ +|.++||+ +|.+.++++|.+|.++|++|+++..+|||++|-. | +...++. ...+|..++...
T Consensus 150 ~l~I~-~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~-f--~~~~~l~~~~~~~~~~~~~~~~~e~~ 225 (616)
T PLN02224 150 DLDIA-YDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEE-Y--KDEKELLENNCCPVHQMPCVARKEDN 225 (616)
T ss_pred HcCCC-CCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCC-C--CCHHHHcCCCCCCCCCCcceEEecce
Confidence 99997 68999998 5999999999999999999999999999987422 2 1111111 111233322111
Q ss_pred ---------------cccCcccccc----------cccc--cCCCCcccc-CCCCCCCc--------hhhhHHHHHH--h
Q 009321 190 ---------------RKRNPADFAL----------WKAA--KAGEPSWDS-PWGPGRPG--------WHIECSAMSA--H 231 (537)
Q Consensus 190 ---------------~k~~~~df~l----------wk~~--~~g~~~w~~-~wG~g~Pg--------W~iecs~~~~--~ 231 (537)
...+| +|.. |... .+-.++++. +||++.|+ |+.+...+.+ .
T Consensus 226 ~ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~ 304 (616)
T PLN02224 226 YFFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALT 304 (616)
T ss_pred EEEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhc
Confidence 11122 2211 1111 122357764 89999996 8776543221 0
Q ss_pred ------------hcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHH
Q 009321 232 ------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 232 ------------~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~ 299 (537)
.++++.++|++|+|+++||+++|+|++.+++...|.++ ++|||++++|+|||||+||+|+|.|+++.
T Consensus 305 ~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i-~~~g~l~~eG~KMSKS~GN~i~p~e~l~~ 383 (616)
T PLN02224 305 EDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-FGHGFLTKDGMKMGKSLGNTLEPFELVQK 383 (616)
T ss_pred ccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEE-EecccEecCCccccccCCccCCHHHHHHH
Confidence 12457799999999999999999999998765444455 67799999999999999999999999999
Q ss_pred cCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCC-----CCCCCChHHHHHHHHHHH
Q 009321 300 YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHG-----KTARINPAAEDCINKLRD 371 (537)
Q Consensus 300 ~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~ 371 (537)
||+|++||||++. ++.++.+|+++.+.+..|. ...+.+.+.|+...+.+...+. .....+.++.+.+.++.+
T Consensus 384 ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~ 463 (616)
T PLN02224 384 FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVE 463 (616)
T ss_pred cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHH
Confidence 9999999999997 8899999999998766542 2223333333333222221111 012345789999999999
Q ss_pred HHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhh---hHHH-HHHHHHHHHHHHHHHhhcc-cCCCCChHHH
Q 009321 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ---QLSL-IESLRKIENEVKEVLRILG-LLPPGAYSEV 446 (537)
Q Consensus 372 ~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~---~~~~-~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~ 446 (537)
.+.++| +.++++.|+.. +++|++.+|+|++..+||...+. ...+ ...+..+...|+.+..+|- |+|. .++++
T Consensus 464 ~v~~~m-e~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~-~Ae~I 540 (616)
T PLN02224 464 KAQTNY-ENLSLSSACEA-VLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPC-LSLRI 540 (616)
T ss_pred HHHHHH-HhccHHHHHHH-HHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHH
Confidence 999999 99999999999 99999999999999999964221 1122 2334456677777777774 8887 67778
Q ss_pred HHHHH
Q 009321 447 LQQLK 451 (537)
Q Consensus 447 ~~~~~ 451 (537)
|++++
T Consensus 541 ~~~Lg 545 (616)
T PLN02224 541 YSQLG 545 (616)
T ss_pred HHHhC
Confidence 87763
No 17
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-55 Score=491.62 Aligned_cols=404 Identities=19% Similarity=0.181 Sum_probs=310.1
Q ss_pred EEEeCC--CCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009321 42 MYVCGV--TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 42 ~y~~gP--t~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
+|+++| +|+|.+||||+|+++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|++++++|++.|.+++++
T Consensus 4 ~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 83 (673)
T PRK00133 4 ILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAG 83 (673)
T ss_pred EEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 556655 455999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCCCC-c------------
Q 009321 120 LQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL-S------------ 172 (537)
Q Consensus 120 L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg~l-s------------ 172 (537)
|||+ +|.++|++ +|++.++++|++|+++|++|++++++|||+.+ ||.||.. +
T Consensus 84 l~i~-~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~ 162 (673)
T PRK00133 84 FGIS-FDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATY 162 (673)
T ss_pred hCCC-CCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccC
Confidence 9998 58899987 69999999999999999999999999999884 6777754 1
Q ss_pred -chhchhh---hcCCCcccccc------------------ccCcccc--------cccccc--cCCCCccccCC-CCCCC
Q 009321 173 -GQRLENN---RAGERVAVDSR------------------KRNPADF--------ALWKAA--KAGEPSWDSPW-GPGRP 219 (537)
Q Consensus 173 -~~~l~~~---~~g~~~~~~~~------------------k~~~~df--------~lwk~~--~~g~~~w~~~w-G~g~P 219 (537)
+.++... .+|..++.... .+++ .+ .-|... .+-.++++..| |++.|
T Consensus 163 ~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP 241 (673)
T PRK00133 163 SPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIP 241 (673)
T ss_pred ChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhCCCcccceeeeCCccceECC
Confidence 1111111 12333321110 0111 00 001110 11235677789 99999
Q ss_pred c--------hhhhHHHH---------------HHhhcC-C--CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEe
Q 009321 220 G--------WHIECSAM---------------SAHYLS-S--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN 273 (537)
Q Consensus 220 g--------W~iecs~~---------------~~~~~g-~--~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~ 273 (537)
| |+.+...+ ...+|. . ...+|++|+|+++||.++|||++.+.+..+|.++ +.|
T Consensus 242 ~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v-~~h 320 (673)
T PRK00133 242 GAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNV-FAH 320 (673)
T ss_pred CCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEE-eee
Confidence 6 76543211 112341 1 2459999999999999999999999876666666 567
Q ss_pred eeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcC-CCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCcc
Q 009321 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPF 349 (537)
Q Consensus 274 g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~ 349 (537)
|||+++|+|||||+||+|+|.|+++.||+|++||||++. +.. +|.+|+++.+....+. +.++.|.+.|+.+++.+.
T Consensus 321 g~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~ 400 (673)
T PRK00133 321 GFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKR 400 (673)
T ss_pred ccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987 677 8999999998765443 445556555655554332
Q ss_pred ccCC-CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhH-HHHHHHHHHHHH
Q 009321 350 QEHG-KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL-SLIESLRKIENE 427 (537)
Q Consensus 350 ~~~~-~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 427 (537)
..+. ...+.+.+++..+.++...+.++| ++|+++.|+.. +++|++.+|+|++..++|...+++. .....+..+...
T Consensus 401 ~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~ 478 (673)
T PRK00133 401 FDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALRE-IMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNL 478 (673)
T ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHH
Confidence 2111 123568899999999999999999 89999999999 9999999999999999996532222 223345566677
Q ss_pred HHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 428 VKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 428 l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
++.++.+|. |+|. .++++|++++
T Consensus 479 l~~l~~lL~Pf~P~-~ae~i~~~Lg 502 (673)
T PRK00133 479 FRALAIYLKPVLPE-LAERAEAFLN 502 (673)
T ss_pred HHHHHHHhhChhch-HHHHHHHHhC
Confidence 777777775 8887 7888888775
No 18
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=2.1e-55 Score=491.56 Aligned_cols=410 Identities=13% Similarity=0.111 Sum_probs=317.1
Q ss_pred CCcceEEEeCCCCC--CCCCcchhh-HHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAY--DLSHLGHAR-AAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113 (537)
Q Consensus 37 ~~~v~~y~~gPt~y--g~lHiGh~r-~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~ 113 (537)
+++-++|+|+|.|| |++||||++ ++|.+|+++||+|++|++|.|++|+|+||.+|..+|.++|++|++++++|++.|
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~ 93 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIH 93 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45567898888777 999999999 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCC--CCC-------
Q 009321 114 LVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPN--YGR------- 170 (537)
Q Consensus 114 ~~~l~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~--yg~------- 170 (537)
.+.+++|||+ +|.|.|++ +|.+.++++|.+|.++|++|++...++||+.+ ||. ||.
T Consensus 94 ~~~~~~l~i~-~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~ 172 (801)
T PLN02610 94 KEVYDWFDIS-FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQ 172 (801)
T ss_pred HHHHHHcCCc-cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccch
Confidence 9999999999 58898887 79999999999999999999999999999885 777 542
Q ss_pred -------Ccchhchhhh---cCCCcccccc------------------ccCc------ccc-c---ccccc--cCCCCcc
Q 009321 171 -------LSGQRLENNR---AGERVAVDSR------------------KRNP------ADF-A---LWKAA--KAGEPSW 210 (537)
Q Consensus 171 -------ls~~~l~~~~---~g~~~~~~~~------------------k~~~------~df-~---lwk~~--~~g~~~w 210 (537)
+.+.++.+.. +|..++.... +.++ ... . -|... .+-.+++
T Consensus 173 Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR 252 (801)
T PLN02610 173 CEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITR 252 (801)
T ss_pred hhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceee
Confidence 2222222221 2443322110 0010 000 0 02111 1223677
Q ss_pred ccCCCCCCCc----------hhhhHHHH-H---------HhhcCCCee---EEEecccCcCcchhHHHHHHhhccCC--C
Q 009321 211 DSPWGPGRPG----------WHIECSAM-S---------AHYLSSKFD---IHGGGIDLIFPHHENEIAQSCAACQD--S 265 (537)
Q Consensus 211 ~~~wG~g~Pg----------W~iecs~~-~---------~~~~g~~~d---ih~~G~Dl~fpH~~~~~a~~~a~~~~--~ 265 (537)
+.+||+++|. |+.+...+ + ..+|..+-+ +|++|+||++||.++|||++++++.+ .
T Consensus 253 ~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~ 332 (801)
T PLN02610 253 DLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTM 332 (801)
T ss_pred ecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCC
Confidence 8899999982 87664322 1 234543223 89999999999999999999998764 4
Q ss_pred CceEEEEeeeeeeCCccccccCCCcccHHHHHHH-cCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHHHH
Q 009321 266 NVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQD 341 (537)
Q Consensus 266 ~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~ 341 (537)
|.++ +.|||++++|+|||||+||+|++.++++. |++|++||||++. +..+|.+||++.+.+..|+ ...|.|.+.|
T Consensus 333 p~~i-~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R 411 (801)
T PLN02610 333 MKTI-SVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINR 411 (801)
T ss_pred CCEE-EeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 66799999999999999999999999995 9999999999997 8999999999999988775 3444555555
Q ss_pred HHHhcC----ccccCCC-------CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCc
Q 009321 342 CEVALS----PFQEHGK-------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (537)
Q Consensus 342 ~~~~l~----~~~~~~~-------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~ 410 (537)
+.+++. ++..+.. ..+.+.++++.+.++.+.+.++| +.++++.|+.. +++|++.+|+|++..+||..
T Consensus 412 ~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L 489 (801)
T PLN02610 412 VLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKT-AMSISSEGNAYLQESQFWKL 489 (801)
T ss_pred HHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhh
Confidence 554444 2222111 12346789999999999999999 99999999999 99999999999999999976
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHH
Q 009321 411 KQQQLS-LIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 411 ~~~~~~-~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~~ 451 (537)
.+.+.. ....+..+++.|+.+..+| .|+|. .++++|++++
T Consensus 490 ~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~-~aeeI~~~Lg 531 (801)
T PLN02610 490 YKEDKPSCAIVVKTSVGLVYLLACLLEPFMPS-FSKEVLKQLN 531 (801)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHhC
Confidence 332222 2334556667788777777 48888 7888888875
No 19
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5.2e-55 Score=476.84 Aligned_cols=401 Identities=20% Similarity=0.186 Sum_probs=308.6
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
|.+++|+|+|.+||||+|+++.+|+++||+|++|++|.|++|+||+|+||+.+|+++|++++++++.|.+.|.+++++||
T Consensus 3 it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 82 (530)
T TIGR00398 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLN 82 (530)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44557788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCCCC--------------cc
Q 009321 122 CLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--------------SG 173 (537)
Q Consensus 122 i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg~l--------------s~ 173 (537)
|. +|.++++++ |++.+++++++|.++|++|++++++|||+.+ ||.||.- .+
T Consensus 83 I~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~ 161 (530)
T TIGR00398 83 IS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEP 161 (530)
T ss_pred CC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCH
Confidence 98 688888775 9999999999999999999999999999874 6666642 11
Q ss_pred hhchhh---hcCCCccccc------------------cccCcccccccc-----------cc--cCCCCccccC-CCCCC
Q 009321 174 QRLENN---RAGERVAVDS------------------RKRNPADFALWK-----------AA--KAGEPSWDSP-WGPGR 218 (537)
Q Consensus 174 ~~l~~~---~~g~~~~~~~------------------~k~~~~df~lwk-----------~~--~~g~~~w~~~-wG~g~ 218 (537)
.++... .+|..++... .+.++ ++..|. .. .+-.++++.. ||++.
T Consensus 162 ~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipv 240 (530)
T TIGR00398 162 TELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPV 240 (530)
T ss_pred HHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeC
Confidence 111110 1233332111 01111 121121 10 1223566777 99999
Q ss_pred Cch--------hhh-HHHHHH------------hhcCCCee-----EEEecccCcCcchhHHHHHHhhccCCCCceEEEE
Q 009321 219 PGW--------HIE-CSAMSA------------HYLSSKFD-----IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 272 (537)
Q Consensus 219 PgW--------~ie-cs~~~~------------~~~g~~~d-----ih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h 272 (537)
|+| +.+ |..++. ++| +-+ +|++|+|++++|+.+|++++.+++.++|.++ ++
T Consensus 241 P~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w--~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~-~~ 317 (530)
T TIGR00398 241 PNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWW--NNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV-FS 317 (530)
T ss_pred CCCCCcEEEEeecchHHhHhhhccccCChhhHHHhC--CCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE-Ee
Confidence 975 332 222221 223 334 9999999999999999999999875555565 77
Q ss_pred eeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHhcCcc
Q 009321 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSPF 349 (537)
Q Consensus 273 ~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~--~l~~l~~~~~~~~~~l~~~ 349 (537)
||||+++|+|||||+||+|+|.|++++||+|++|||+++. ++.++++|+++.+.+..| .+.+++|++.|+.+.+.+.
T Consensus 318 ~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~ 397 (530)
T TIGR00398 318 HGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKY 397 (530)
T ss_pred eccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999996 789999999999988753 3567777777765554432
Q ss_pred ccC-----CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHH
Q 009321 350 QEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKI 424 (537)
Q Consensus 350 ~~~-----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~ 424 (537)
..+ ....+.+++++..+.++.+.+.++| ++++++.|+.. +++|++.+|+|++..++|...+....+...+..+
T Consensus 398 ~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l 475 (530)
T TIGR00398 398 FNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALRE-IMKLADRGNKYIDENKPWELFKQSPRLKELLAVC 475 (530)
T ss_pred cCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHhcCCChhhcCChHHHHHHHHHH
Confidence 111 1113457899999999999999999 99999999999 9999999999999999987533222233344555
Q ss_pred HHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 425 ENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 425 ~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
..+++.+..+|. |+|. .++++|+++
T Consensus 476 ~~~l~~l~~ll~P~~P~-~ae~i~~~L 501 (530)
T TIGR00398 476 SMLIRVLSILLYPIMPK-LSEKILKFL 501 (530)
T ss_pred HHHHHHHHHHHhCcccH-HHHHHHHHh
Confidence 666777777774 7887 677777766
No 20
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.6e-55 Score=487.19 Aligned_cols=400 Identities=18% Similarity=0.230 Sum_probs=307.6
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
++|+|+|.|| |++||||+|+++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|++++++|.+.|.++|+
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5788888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhch----hhhcCCCcccc----
Q 009321 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVD---- 188 (537)
Q Consensus 119 ~L~i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~----~~~~g~~~~~~---- 188 (537)
+|||. +|.++|+|+ |...+++++++|.++|++|.....++||+.+-.. ++...+. ...+|..++..
T Consensus 85 ~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~---l~~~~l~~~~~c~~cg~~~e~~~~~~ 160 (648)
T PRK12267 85 KLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETF---FTESQLVDGGKCPDCGREVELVKEES 160 (648)
T ss_pred HcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCcc---CChHHhccCCcCCCCCCcCeEEecce
Confidence 99998 689999984 8999999999999999999999999998764211 1111110 11123322110
Q ss_pred --------------ccccCcccc----------c-ccccc--cCCCCccc-cCCCCCCCc--------hhhhHHHH-HH-
Q 009321 189 --------------SRKRNPADF----------A-LWKAA--KAGEPSWD-SPWGPGRPG--------WHIECSAM-SA- 230 (537)
Q Consensus 189 --------------~~k~~~~df----------~-lwk~~--~~g~~~w~-~~wG~g~Pg--------W~iecs~~-~~- 230 (537)
..+.+| ++ . -|... .+-.++++ .+||++.|+ |+.+.... +.
T Consensus 161 ~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~ 239 (648)
T PRK12267 161 YFFRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITAL 239 (648)
T ss_pred EEEEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHc
Confidence 011122 11 1 23221 22345776 479999996 77654322 11
Q ss_pred -----------hhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHH
Q 009321 231 -----------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 231 -----------~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~ 299 (537)
.+| +.|+|+.|+|+++||..+|++++.+++..+|.++ +.|||++++|+|||||+||+|++.|+++.
T Consensus 240 ~~~~~~~~~~~~~w--p~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v-~~hg~l~~eg~KMSKS~GN~i~p~d~l~~ 316 (648)
T PRK12267 240 GYGSDDDELFKKFW--PADVHLVGKDILRFHAIYWPIMLMALGLPLPKKV-FAHGWWLMKDGKMSKSKGNVVDPEELVDR 316 (648)
T ss_pred CCCCCCchHHHhhc--ccceEEEeeeecchhHHHHHHHHHhCCCCCCcEE-EecceEEECCceecccCCcccCHHHHHHH
Confidence 123 6799999999999999999999998876666666 55799999999999999999999999999
Q ss_pred cCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCCCCCChHHHHHHHHHHH
Q 009321 300 YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRD 371 (537)
Q Consensus 300 ~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~ 371 (537)
||+|++|||+++. ++.+|.+||++.+.+..|. ...|.|.+.|+...+.+...+ ....+.|+++++.+.++.+
T Consensus 317 ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~ 396 (648)
T PRK12267 317 YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLK 396 (648)
T ss_pred cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHH
Confidence 9999999999986 8999999999999876553 233444444444333222111 1123457899999999999
Q ss_pred HHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhh--hHHHH-HHHHHHHHHHHHHHhhcc-cCCCCChHHHH
Q 009321 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVL 447 (537)
Q Consensus 372 ~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~--~~~~~-~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~ 447 (537)
.+.++| ++++++.|+.. +++|++.+|+|++..+||...+. +..++ ..+..+...|+.+..+|- |+|. .++++|
T Consensus 397 ~v~~~~-e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~-~ae~i~ 473 (648)
T PRK12267 397 NYEELM-EELQFSRALEE-VWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPE-TSKKIF 473 (648)
T ss_pred HHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccch-HHHHHH
Confidence 999999 89999999999 99999999999999999965322 22222 234456666776666774 8887 678888
Q ss_pred HHHH
Q 009321 448 QQLK 451 (537)
Q Consensus 448 ~~~~ 451 (537)
++++
T Consensus 474 ~~Lg 477 (648)
T PRK12267 474 EQLG 477 (648)
T ss_pred HHcC
Confidence 7764
No 21
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-53 Score=468.51 Aligned_cols=406 Identities=18% Similarity=0.161 Sum_probs=303.3
Q ss_pred eEEEeCCCCC--CCCCcchhhHH-HHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 41 GMYVCGVTAY--DLSHLGHARAA-VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 41 ~~y~~gPt~y--g~lHiGh~r~~-v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
++|+|+|.|| |.+||||++++ |.+|+++||+|++|++|.|++|+||||+||+.+|+++|+++++++++|.+.|.+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4667766555 99999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCCC-------------
Q 009321 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGR------------- 170 (537)
Q Consensus 118 ~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg~------------- 170 (537)
++|||. +|.++|++ +|++.+++++.+|+++|++|+.++.+|||+.+ ||.||.
T Consensus 84 ~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~ 162 (556)
T PRK12268 84 KKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGA 162 (556)
T ss_pred HHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccc
Confidence 999997 68899998 89999999999999999999999999999874 566651
Q ss_pred -Ccchhchhh---hcCCCccccc----------ccc-----------Ccc----ccccccc--ccCCCCccccCCCCCCC
Q 009321 171 -LSGQRLENN---RAGERVAVDS----------RKR-----------NPA----DFALWKA--AKAGEPSWDSPWGPGRP 219 (537)
Q Consensus 171 -ls~~~l~~~---~~g~~~~~~~----------~k~-----------~~~----df~lwk~--~~~g~~~w~~~wG~g~P 219 (537)
+.+.++... .+|..++... .+. -|. .+.-|-. ..+-.+++...||.+.|
T Consensus 163 ~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP 242 (556)
T PRK12268 163 LLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP 242 (556)
T ss_pred cCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC
Confidence 111111110 1233221110 000 000 0001111 11223566778999999
Q ss_pred --c--------hhhhHHHH-------H---------Hhhc--CCCeeEEEecccCcCcchhHHHHHHhhcc--CCCCceE
Q 009321 220 --G--------WHIECSAM-------S---------AHYL--SSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVSY 269 (537)
Q Consensus 220 --g--------W~iecs~~-------~---------~~~~--g~~~dih~~G~Dl~fpH~~~~~a~~~a~~--~~~~~~~ 269 (537)
+ |+...... . ..+| ..+.++|+.|+|+++||...+++++.+.+ .+.|.++
T Consensus 243 ~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v 322 (556)
T PRK12268 243 WPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEI 322 (556)
T ss_pred CCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEe
Confidence 2 43322111 1 1133 22457999999999999999999998887 3444455
Q ss_pred EEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhc
Q 009321 270 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVAL 346 (537)
Q Consensus 270 ~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l 346 (537)
++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..++++|+++.+....+. +..+++.+.++.+++
T Consensus 323 -~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~ 401 (556)
T PRK12268 323 -VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFI 401 (556)
T ss_pred -eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999987 7789999999998765432 334445444444443
Q ss_pred Cccc----cCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhh-HHHHHHH
Q 009321 347 SPFQ----EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESL 421 (537)
Q Consensus 347 ~~~~----~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~-~~~~~~l 421 (537)
.... ........++++++.+.++...+.++| ++|+++.|+.. +++|++.+|+|++..++|...+.+ ......+
T Consensus 402 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l 479 (556)
T PRK12268 402 EKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATVL 479 (556)
T ss_pred HHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHcCCChhhhcCCHHHHHHHH
Confidence 2211 111124568999999999999999999 99999999999 999999999999999988642211 1222334
Q ss_pred HHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 422 RKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 422 ~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
..+..+|+.++.+|- |+|. .++++|++++
T Consensus 480 ~~~~~~l~~~~~lL~P~~P~-~aeei~~~Lg 509 (556)
T PRK12268 480 YTALNLVRLLAVLLYPFLPF-SAQKIWEMLG 509 (556)
T ss_pred HHHHHHHHHHHHHhhCccch-HHHHHHHHhC
Confidence 455567777777774 8887 7788887763
No 22
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-52 Score=413.61 Aligned_cols=390 Identities=21% Similarity=0.230 Sum_probs=306.8
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
..|+++|..| ..+||||+++.+.+|+++|+.+.+|..|+|.+|+|+||.||...|..+|.+|.++|++..++|...+.
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 7888889887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCC--Ccc-----hhchhhhcCCCccc--
Q 009321 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSG-----QRLENNRAGERVAV-- 187 (537)
Q Consensus 119 ~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~--ls~-----~~l~~~~~g~~~~~-- 187 (537)
.+||. ++.|.|+| .|...+++++..+.++|++|..++++|||+++...|.+ +.. ...-.+++|..+..
T Consensus 120 ~~gi~-yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k 198 (578)
T KOG0436|consen 120 DAGIA-YTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK 198 (578)
T ss_pred HhCcc-hhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec
Confidence 99998 68999999 79999999999999999999999999999997555542 100 01112333443311
Q ss_pred ----------------cccccCcccccc----------cccccCC--CCcccc---CCCCCCCc--------hhhhHHHH
Q 009321 188 ----------------DSRKRNPADFAL----------WKAAKAG--EPSWDS---PWGPGRPG--------WHIECSAM 228 (537)
Q Consensus 188 ----------------~~~k~~~~df~l----------wk~~~~g--~~~w~~---~wG~g~Pg--------W~iecs~~ 228 (537)
+-...|| +|+. |..+... ++++++ .||++.|| |+.+...+
T Consensus 199 E~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578)
T KOG0436|consen 199 EDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578)
T ss_pred ccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhH
Confidence 1123355 4443 2211111 234543 79999997 98874322
Q ss_pred HHh--------------hcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHH
Q 009321 229 SAH--------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 294 (537)
Q Consensus 229 ~~~--------------~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~ 294 (537)
.+- .+|++..+|++|+|++.||+++|||+++|++.++|.++++ |||++.+|.|||||+||+|.|.
T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~v-Hghwt~ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFV-HGHWTKNGMKMSKSLGNVVDPF 356 (578)
T ss_pred HHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEE-eeeeeecceecchhhccccCHH
Confidence 211 2578899999999999999999999999998888888855 5999999999999999999999
Q ss_pred HHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHH-----HHHHHHHHHHHHHH--hcCcc-ccCC---C--CCCCCh
Q 009321 295 QITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQDCEV--ALSPF-QEHG---K--TARINP 360 (537)
Q Consensus 295 dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~-----~l~~l~~~~~~~~~--~l~~~-~~~~---~--~~~~~~ 360 (537)
++++.||+|++|||||.. ....|-||+++.+....| .+++|.+ |+.+ +.... +... . ......
T Consensus 357 ~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~Lln---Rc~gkkln~sn~e~~l~~~s~~v~ae~~ 433 (578)
T KOG0436|consen 357 ELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLN---RCLGKKLNISNCESTLVVDSPTVAAEGE 433 (578)
T ss_pred HHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHH---HHhhcccChhccccccccCCcchhhccc
Confidence 999999999999999997 889999999999987764 4555544 4544 21111 1110 0 112345
Q ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 009321 361 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438 (537)
Q Consensus 361 ~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~ 438 (537)
.+.+.+.++.+.+.+.+ |+|..+.|+.+ +.++++..|.+++..+||+...+.+.....+..++..+.++++|+||.
T Consensus 434 ~lv~~v~kl~ev~a~~~-d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~il 509 (578)
T KOG0436|consen 434 PLVDTVEKLPEVAATNY-DNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGIL 509 (578)
T ss_pred hHHHHHHHhHHHHHhhc-ccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999 99999999999 999999999999999999875444444444555566666667777753
No 23
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=4.1e-52 Score=424.71 Aligned_cols=269 Identities=21% Similarity=0.225 Sum_probs=229.6
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCC-------------ChHHHHH
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE-------------NPLSLSN 107 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~-------------~~~~~~~ 107 (537)
.|...+|||||.+||||+|+++.+|+++|++|++|++|.|++|+|++|++|+.+|++.+. +++++++
T Consensus 3 ~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T cd00668 3 YVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVE 82 (312)
T ss_pred EEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHH
Confidence 455667899999999999999999999999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCC
Q 009321 108 RYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGER 184 (537)
Q Consensus 108 ~~~~~~~~~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~ 184 (537)
+|.+.|.++|++|||..+ +.+.+++ +|++.++++|++|.++|++|++.+.+++...-+..++.++...++.+..+.
T Consensus 83 ~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~- 161 (312)
T cd00668 83 EMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK- 161 (312)
T ss_pred HHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC-
Confidence 999999999999999853 1443443 799999999999999999999999999988888899988876666665443
Q ss_pred cccccccc-------CcccccccccccCCCCccccCCCCCCCchhhhH----HH---HHHhhcCC--------CeeEEEe
Q 009321 185 VAVDSRKR-------NPADFALWKAAKAGEPSWDSPWGPGRPGWHIEC----SA---MSAHYLSS--------KFDIHGG 242 (537)
Q Consensus 185 ~~~~~~k~-------~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iec----s~---~~~~~~g~--------~~dih~~ 242 (537)
+..+..+. ++.||++ +|+++||.|+||||++| +. ++..+++. +.|||++
T Consensus 162 ~~p~~~~~~~~~~l~~~~d~~i---------sR~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~ 232 (312)
T cd00668 162 IVPEHVKNRMEAWLESLLDWAI---------SRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLI 232 (312)
T ss_pred cCChHHHHHHHHHHhCCCCeEE---------eccCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEEE
Confidence 22222222 3345555 45689999999999999 43 33333332 6899999
Q ss_pred cccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCC-ccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcc
Q 009321 243 GIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLN 319 (537)
Q Consensus 243 G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~ 319 (537)
|+|++||||+++++++.++++. ++.++|+| ||++++| +|||||+||+|++.|++++|++|++|||+++. ++++|++
T Consensus 233 G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~ 311 (312)
T cd00668 233 GKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIR 311 (312)
T ss_pred ecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCC
Confidence 9999999999999999999876 78899887 9999977 99999999999999999999999999999997 6888887
Q ss_pred c
Q 009321 320 Y 320 (537)
Q Consensus 320 f 320 (537)
|
T Consensus 312 ~ 312 (312)
T cd00668 312 L 312 (312)
T ss_pred C
Confidence 6
No 24
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=9.6e-49 Score=408.61 Aligned_cols=292 Identities=24% Similarity=0.279 Sum_probs=217.1
Q ss_pred EEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009321 42 MYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 42 ~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
+|||+|.|| |.|||||++++|.+|+++|++|++|++|.|++|+|+||.||..+|+++|++|++++++|.+.|++.+++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~ 80 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEA 80 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 466665554 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCC-CC-------------
Q 009321 120 LQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYG-RL------------- 171 (537)
Q Consensus 120 L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg-~l------------- 171 (537)
|||+ +|.|.|++ +|.+.+++++++|.++|++|+++..++||+.+ ||.|| .-
T Consensus 81 ~~I~-~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~ 159 (391)
T PF09334_consen 81 LNIS-YDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPL 159 (391)
T ss_dssp TT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBE
T ss_pred cCCC-CcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCc
Confidence 9999 68899987 79999999999999999999999999999885 67666 11
Q ss_pred cchhchhh---hcCCCccccc----------cc--------cCcccccccccc---------cCC----CCccccCCCCC
Q 009321 172 SGQRLENN---RAGERVAVDS----------RK--------RNPADFALWKAA---------KAG----EPSWDSPWGPG 217 (537)
Q Consensus 172 s~~~l~~~---~~g~~~~~~~----------~k--------~~~~df~lwk~~---------~~g----~~~w~~~wG~g 217 (537)
.+.++.+. .+|..+.+.. ++ .++ ++ |... +.| .++.+.+||++
T Consensus 160 ~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~ 236 (391)
T PF09334_consen 160 EPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DF--PPPRVREIVRNWLKEGLPDLSISRPLDWGIP 236 (391)
T ss_dssp ECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TS--SHHHHHHHHHHHHHT----EE-ECTTSSSEE
T ss_pred ccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CC--CChhHHHHHHHHhhcccCceeeecCCCCcce
Confidence 11111111 1233222110 00 010 11 2111 112 24667899999
Q ss_pred CCc--------hhhhHHHHH----------------Hhhc---CCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEE
Q 009321 218 RPG--------WHIECSAMS----------------AHYL---SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 218 ~Pg--------W~iecs~~~----------------~~~~---g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~ 270 (537)
.|+ |+.++.... .++| +....+|++|+|++++|.++|+|++.|++.+.|.++
T Consensus 237 vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i- 315 (391)
T PF09334_consen 237 VPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRI- 315 (391)
T ss_dssp ETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEE-
T ss_pred eeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEE-
Confidence 995 877653321 1234 224569999999999999999999999776666666
Q ss_pred EEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH-----HHHHHHH
Q 009321 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQT 338 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~-----l~~l~~~ 338 (537)
+.|||++++|+|||||+||+|++.|+++.|++|++||||++. +..++.+|+++.+.+..|. ++||.++
T Consensus 316 ~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R 389 (391)
T PF09334_consen 316 VVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNR 389 (391)
T ss_dssp EEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHH
T ss_pred EeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhc
Confidence 667999999999999999999999999999999999999997 8899999999999988764 6666554
No 25
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-47 Score=412.99 Aligned_cols=362 Identities=17% Similarity=0.149 Sum_probs=288.5
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
.+++|.|++|||||+|++||||+|+++++|+++|+|++.||+|.++++++|+|++|...+...+..|+.+++.+.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred HHHHcCCCCCCCccchhh--hHHHHHHHHHHHHHCCcee-eeccceeecCCCCCCCCCCcchhchhhhcCCCcccccccc
Q 009321 116 DMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKR 192 (537)
Q Consensus 116 ~l~~L~i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay-~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~ 192 (537)
+|++|||. +|.++++++ |.+.+++++++|.++|++| +.+|.+||++..+ |
T Consensus 189 ~l~~LgI~-~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~---~----------------------- 241 (507)
T PRK01611 189 DLDRLGVH-FDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEF---G----------------------- 241 (507)
T ss_pred HHHHcCCe-eeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhh---C-----------------------
Confidence 99999999 477777774 4568999999999999999 8899999986432 1
Q ss_pred CcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCC-ceEEE
Q 009321 193 NPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWM 271 (537)
Q Consensus 193 ~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~-~~~~~ 271 (537)
++.|++|||+ +|.++|.++ -++||+.|... ++..++|++.+.+..|++. .+.+++++..+. .++++
T Consensus 242 ~~~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d~~i~V~g~~q~~hf~~~---~~~~~~lg~~~~~~~~~~ 308 (507)
T PRK01611 242 DDKDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FDRVIYVVGADHHGHFKRL---KAALKALGYDPDALEVLL 308 (507)
T ss_pred CCCCeEEEEC--CCCccchHH----HHHHHHHHHhh----cCEEEEEECCChHHHHHHH---HHHHHHcCCCcccceEEE
Confidence 0127888887 566666543 35677776533 4444445544333222222 234455554432 36668
Q ss_pred Eeee--eee-CCccccccCCCcccHHHHHHH-cCc----------------hhhHHHHhhcCcCCCcccCHHHHHHHHH-
Q 009321 272 HNGH--VTN-NNEKMSKSLGNFFTIRQITER-YHP----------------LALRHFLISAHYRSPLNYSVLQLDSASD- 330 (537)
Q Consensus 272 h~g~--v~~-~G~KMSKS~Gn~i~~~dll~~-~~~----------------d~lR~~ll~~~~~~~~~fs~~~l~~~~~- 330 (537)
|..+ +.. +|+|||||+||+|++.|++++ ++. |++||++|+.++.++++|+++.+.+..+
T Consensus 309 h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 309 HQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred EEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCC
Confidence 8544 444 678999999999999999999 999 9999999999999999999999887764
Q ss_pred HHHHHHHHHHHHHHhcCccccCC-------CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHh
Q 009321 331 AVFYIYQTLQDCEVALSPFQEHG-------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (537)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~~~~~~-------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~ 403 (537)
+..+++|+++|+++++++....+ ..++.+++|+..+..+++.+.+++ ++++ |+.++.||++|++.+|+||+
T Consensus 389 ~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~-p~~l~~yl~~la~~f~~fY~ 466 (507)
T PRK01611 389 NPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELE-PHRIANYLYELAGAFHSFYN 466 (507)
T ss_pred CcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCC-cHHHHHHHHHHHHHHHHHHH
Confidence 23389999999999887643111 113457889999999999999999 7887 66666669999999999998
Q ss_pred hhcccCch-h-hhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 404 MLKKKQPK-Q-QQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 404 ~~~~~~~~-~-~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.++ .... . ....|+.++.++..+|.++|.+|||.++
T Consensus 467 ~~~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 467 RVL-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 775 4322 2 3468999999999999999999999764
No 26
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=3.2e-46 Score=381.94 Aligned_cols=275 Identities=23% Similarity=0.238 Sum_probs=210.7
Q ss_pred EEEeC--CCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009321 42 MYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 42 ~y~~g--Pt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
+|+|+ |+|+|++||||+|+++.+|+++|++|++|++|.|++|+||||+||+.+|+++|++++++++.+.+.|.+++++
T Consensus 2 ~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~ 81 (319)
T cd00814 2 VLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKW 81 (319)
T ss_pred EEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45554 5555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCC----------Ccc--hhchhhhcCCCc
Q 009321 120 LQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR----------LSG--QRLENNRAGERV 185 (537)
Q Consensus 120 L~i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~----------ls~--~~l~~~~~g~~~ 185 (537)
|||. +|.++++++ |++.+++++++|.++|++|+++..++||+.|...+.. |+. ..+.+.......
T Consensus 82 LgI~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~ 160 (319)
T cd00814 82 LNIS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPD 160 (319)
T ss_pred cCCc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCc
Confidence 9998 688888874 8999999999999999999999999998765322211 110 000000000000
Q ss_pred -cccccccCcccccccccc--cCCCCcccc-CCCCCCCc--------hhhhHHH-HHH-------------hhcCCCeeE
Q 009321 186 -AVDSRKRNPADFALWKAA--KAGEPSWDS-PWGPGRPG--------WHIECSA-MSA-------------HYLSSKFDI 239 (537)
Q Consensus 186 -~~~~~k~~~~df~lwk~~--~~g~~~w~~-~wG~g~Pg--------W~iecs~-~~~-------------~~~g~~~di 239 (537)
...+..+ ....-|-.. .+-.++++. .||++.|+ |+..... ++. ...+.+.+|
T Consensus 161 ~~~p~~~~--~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v 238 (319)
T cd00814 161 FIWPENAR--NEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELV 238 (319)
T ss_pred cCCCHHHH--HHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceE
Confidence 0000000 000112211 122357778 89999885 7654222 110 012447899
Q ss_pred EEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCc
Q 009321 240 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPL 318 (537)
Q Consensus 240 h~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~ 318 (537)
|++|+|+++||+++|+|++.+++. ++++.+++|||++++|+|||||+||+|++.|+++.|++|++|||+++. +..++.
T Consensus 239 ~~~G~D~~~fh~~~~pa~l~~~~~-~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~ 317 (319)
T cd00814 239 HFIGKDIIRFHAIYWPAMLLGAGL-PLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDS 317 (319)
T ss_pred EEEeechhhhhHHHHHHHHHhCCC-CCCcEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCC
Confidence 999999999999999999988764 445566889999999999999999999999999999999999999997 888888
Q ss_pred cc
Q 009321 319 NY 320 (537)
Q Consensus 319 ~f 320 (537)
+|
T Consensus 318 ~f 319 (319)
T cd00814 318 DF 319 (319)
T ss_pred CC
Confidence 87
No 27
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.3e-45 Score=412.21 Aligned_cols=405 Identities=15% Similarity=0.157 Sum_probs=296.2
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH-cCCChH------------HHH
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGENPL------------SLS 106 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~-~g~~~~------------~~~ 106 (537)
..+....|+|+|.+||||+++++++|+++||+|++|++|.|+.|+|.+|.+|...|++ .|+++. +++
T Consensus 40 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~ 119 (800)
T PRK13208 40 YSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELT 119 (800)
T ss_pred EEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 3344445677799999999999999999999999999999999999999999999987 588876 599
Q ss_pred HHHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhch------
Q 009321 107 NRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE------ 177 (537)
Q Consensus 107 ~~~~~~~~~~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~------ 177 (537)
++|.+.+.++|++||+..+ +.+.+|+ +|...++.+|.+|.++|++|++...|+||+.+...+ +..+++
T Consensus 120 ~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~L---sd~ev~~~~~~~ 196 (800)
T PRK13208 120 DEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAI---AQAEVEYREREG 196 (800)
T ss_pred HHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcc---chhhhccccccc
Confidence 9999999999999999842 1344544 799999999999999999999999999998752110 000000
Q ss_pred -----------------------------------------------------------------hhhcCCCcccccccc
Q 009321 178 -----------------------------------------------------------------NNRAGERVAVDSRKR 192 (537)
Q Consensus 178 -----------------------------------------------------------------~~~~g~~~~~~~~k~ 192 (537)
.+..|+.+-......
T Consensus 197 ~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~h 276 (800)
T PRK13208 197 KLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFG 276 (800)
T ss_pred eEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCC
Confidence 000000000000000
Q ss_pred Cccccc--------------------------------------------------------------------------
Q 009321 193 NPADFA-------------------------------------------------------------------------- 198 (537)
Q Consensus 193 ~~~df~-------------------------------------------------------------------------- 198 (537)
++.||.
T Consensus 277 d~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~ 356 (800)
T PRK13208 277 DKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTR 356 (800)
T ss_pred CHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccc
Confidence 001110
Q ss_pred ccccc---------------------------------c-CCCCccccCCCCCCCchhhh--------------------
Q 009321 199 LWKAA---------------------------------K-AGEPSWDSPWGPGRPGWHIE-------------------- 224 (537)
Q Consensus 199 lwk~~---------------------------------~-~g~~~w~~~wG~g~PgW~ie-------------------- 224 (537)
-|.-. + +-.+++...||.+.|-|+.+
T Consensus 357 qwfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d 436 (800)
T PRK13208 357 QWFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKD 436 (800)
T ss_pred eeeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhh
Confidence 01000 0 22234556799999977631
Q ss_pred ------HHH--------------------HH-HhhcC-----------CCeeEEEecccCcCcchhHHHHHHhhccCC-C
Q 009321 225 ------CSA--------------------MS-AHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-S 265 (537)
Q Consensus 225 ------cs~--------------------~~-~~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~ 265 (537)
|.. .. ...+| .|.|++++|+|++++|....++++.++.+. |
T Consensus 437 ~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~P 516 (800)
T PRK13208 437 EPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLP 516 (800)
T ss_pred ccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCC
Confidence 100 00 00112 368999999999999999999999888776 6
Q ss_pred CceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 009321 266 NVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEV 344 (537)
Q Consensus 266 ~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~ 344 (537)
|.++++ |||++. +|+|||||+||+|+|.|++++||+|++|||+++++++++++||++.+....+.+.+|+++++.+..
T Consensus 517 f~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~ 595 (800)
T PRK13208 517 WKNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH 595 (800)
T ss_pred cceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688855 699986 999999999999999999999999999999997799999999999999888888888888665543
Q ss_pred hcCcccc--CCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHH--HHHHHhhhcccCchh-hhHHHHH
Q 009321 345 ALSPFQE--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKF--INSSLNMLKKKQPKQ-QQLSLIE 419 (537)
Q Consensus 345 ~l~~~~~--~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~--~N~~~~~~~~~~~~~-~~~~~~~ 419 (537)
+...... .......|+++++.+..+.+.+.++| ++|+++.|++. +++|+.. .|.|++..+++.... ....+..
T Consensus 596 ~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~-i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~ 673 (800)
T PRK13208 596 FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEE-IESFFWHVFCDDYLELVKSRAYGEDEEEEQKS 673 (800)
T ss_pred cccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHH
Confidence 2210000 01113357899999999999999999 89999999999 9999964 899999887753211 1111233
Q ss_pred HHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 420 SLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 420 ~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+..+..+|+.++.+|. |+|. .++++|+++.
T Consensus 674 ~~~~l~~~l~~l~~LLaPf~P~-iaEelw~~L~ 705 (800)
T PRK13208 674 ARYTLYTVLDTLLRLLAPFLPF-ITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHHHHHhcccchh-hHHHHHHhCC
Confidence 44566678888888886 8888 7899999885
No 28
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=9.7e-44 Score=406.75 Aligned_cols=408 Identities=17% Similarity=0.200 Sum_probs=294.6
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH----cCCCh------------H
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENP------------L 103 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~----~g~~~------------~ 103 (537)
..|+...|+++|.|||||++++++.|+++||.|++|++|.++.|+|.+|.+|...+++ .|.++ +
T Consensus 35 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~ 114 (861)
T TIGR00422 35 FCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIW 114 (861)
T ss_pred EEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHH
Confidence 4455556667799999999999999999999999999999999999999988876543 36655 5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccc-hh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCC----------
Q 009321 104 SLSNRYCQEYLVDMADLQCLPPTYQPR-VS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR---------- 170 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~i~~~~~~~r-~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~---------- 170 (537)
+++++|.+.+.+.+++||++.+-..++ |+ .|.+.++.+|.+|.++|++|++...|+||+.+-.....
T Consensus 115 ~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~ 194 (861)
T TIGR00422 115 EWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKG 194 (861)
T ss_pred HHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccccc
Confidence 789999999999999999985321112 32 78999999999999999999999999999874211000
Q ss_pred --------C------------------------------------cchhc----------------hhhhcCCCcccccc
Q 009321 171 --------L------------------------------------SGQRL----------------ENNRAGERVAVDSR 190 (537)
Q Consensus 171 --------l------------------------------------s~~~l----------------~~~~~g~~~~~~~~ 190 (537)
+ -+..+ -++..|+.+.....
T Consensus 195 ~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~P 274 (861)
T TIGR00422 195 KLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTP 274 (861)
T ss_pred eEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecC
Confidence 0 00000 00000110000000
Q ss_pred ccCccccc------------------------------------------------------------cccc--------
Q 009321 191 KRNPADFA------------------------------------------------------------LWKA-------- 202 (537)
Q Consensus 191 k~~~~df~------------------------------------------------------------lwk~-------- 202 (537)
..+|.||. .|+.
T Consensus 275 ah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~ 354 (861)
T TIGR00422 275 AHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLL 354 (861)
T ss_pred CCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEe
Confidence 00000000 0000
Q ss_pred -----------------------------------------ccCCCCccccCCCCCCCchhhh-HHH-------------
Q 009321 203 -----------------------------------------AKAGEPSWDSPWGPGRPGWHIE-CSA------------- 227 (537)
Q Consensus 203 -----------------------------------------~~~g~~~w~~~wG~g~PgW~ie-cs~------------- 227 (537)
.++-.+++...||.+.|.|+.+ |..
T Consensus 355 ~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~ 434 (861)
T TIGR00422 355 SKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDK 434 (861)
T ss_pred cCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhh
Confidence 0111234566899999998742 210
Q ss_pred --------H----------------HHhhcC-----------CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEE
Q 009321 228 --------M----------------SAHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWM 271 (537)
Q Consensus 228 --------~----------------~~~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~ 271 (537)
| ....+| .+.|+|+.|+|++++|...+++++.++.++ ||.++++
T Consensus 435 ~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~ 514 (861)
T TIGR00422 435 TNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYI 514 (861)
T ss_pred hccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEE
Confidence 0 000012 267999999999999999999999988776 5578866
Q ss_pred Eeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 009321 272 HNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF 349 (537)
Q Consensus 272 h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~ 349 (537)
||||+. +|+|||||+||+|+|.+++++||+|++|||+++. +.++|++||++.+.+..+.+.+|+|+.+.+...+...
T Consensus 515 -hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~ 593 (861)
T TIGR00422 515 -HGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDD 593 (861)
T ss_pred -eeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 599997 9999999999999999999999999999999987 5599999999999998888888888665444333221
Q ss_pred c--c--CCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHHHHH
Q 009321 350 Q--E--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRK 423 (537)
Q Consensus 350 ~--~--~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~l~~ 423 (537)
. . .......|+|+++.++.+.+.+.++| ++|++..|+.. +++|+ ..+|.|++..++|........+......
T Consensus 594 ~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~ 671 (861)
T TIGR00422 594 LELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDT 671 (861)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHH
Confidence 0 0 01123457899999999999999999 99999999999 99997 6789999998887532212223344456
Q ss_pred HHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 424 IENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 424 ~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+..+|..++.+|. |+|. .++++|+++.
T Consensus 672 l~~~l~~~~~lL~Pf~P~-itEelw~~L~ 699 (861)
T TIGR00422 672 LYYVLDKALRLLHPFMPF-ITEEIWQHFK 699 (861)
T ss_pred HHHHHHHHHHHHhhhhhH-HHHHHHHhCc
Confidence 6677788888885 8888 7899999885
No 29
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-43 Score=388.02 Aligned_cols=436 Identities=17% Similarity=0.181 Sum_probs=319.7
Q ss_pred ccCCCCCCceeeeecCCCCccccccCCC---CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcch
Q 009321 10 VAAPKMDLTLKIYNSMTQQKELFTPIVR---GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD 86 (537)
Q Consensus 10 ~~~~~~~~~l~~~ntl~~~~~~~~p~~~---~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd 86 (537)
.|.|... .-++|.....+ ..|.|..+ ....|.+++|+|+|.||||||.++.+.|+|+||.|++||+|.|..|+|+
T Consensus 4 ~ydp~~i-E~k~~~~W~~~-~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 4 TYDPKEI-EEKWYKKWEES-GYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCChhhh-hHHHHHHHHhc-CCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 4555543 45666665553 47877643 3378888899999999999999999999999999999999999999999
Q ss_pred hhHHH----HHHHHHcCCC------------hHHHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHH
Q 009321 87 VDDKI----IRRANDLGEN------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIIN 147 (537)
Q Consensus 87 ~d~ki----~~~a~~~g~~------------~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s---~~~~~~~~~~~~L~~ 147 (537)
.|-.+ .+...++|++ ++++.+++.+.+.+.|++||++.+-...|.| .....+++.|-+|++
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 98644 4444444655 5789999999999999999999643333344 678899999999999
Q ss_pred CCceeeeccceeecCCCC-----------------------------------------------------CCCCCCcch
Q 009321 148 NDCAYVVEGDVFFAVEKS-----------------------------------------------------PNYGRLSGQ 174 (537)
Q Consensus 148 kG~ay~~~~~v~f~~~~~-----------------------------------------------------~~yg~ls~~ 174 (537)
+|+||+.+..|.+|+.+- ++|-.|-++
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk 241 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGK 241 (877)
T ss_pred CCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCC
Confidence 999999999999998741 011111111
Q ss_pred hch----------------hhhcCCCccccccccCcccccccccc-----------------------------------
Q 009321 175 RLE----------------NNRAGERVAVDSRKRNPADFALWKAA----------------------------------- 203 (537)
Q Consensus 175 ~l~----------------~~~~g~~~~~~~~k~~~~df~lwk~~----------------------------------- 203 (537)
.+. ++.-|+.+..-+.-+++.||.+|++.
T Consensus 242 ~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv 321 (877)
T COG0525 242 EVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIV 321 (877)
T ss_pred EEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHH
Confidence 000 00001100000001122333333210
Q ss_pred ----------------------------------------------------cCCC-----------------------C
Q 009321 204 ----------------------------------------------------KAGE-----------------------P 208 (537)
Q Consensus 204 ----------------------------------------------------~~g~-----------------------~ 208 (537)
+.|. +
T Consensus 322 ~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcI 401 (877)
T COG0525 322 EDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCI 401 (877)
T ss_pred HHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCcee
Confidence 0111 2
Q ss_pred ccccCCCCCCCchhh-hHHHH--------------------------------HHhh-----cCC-----------CeeE
Q 009321 209 SWDSPWGPGRPGWHI-ECSAM--------------------------------SAHY-----LSS-----------KFDI 239 (537)
Q Consensus 209 ~w~~~wG~g~PgW~i-ecs~~--------------------------------~~~~-----~g~-----------~~di 239 (537)
++..-||..+|.|+. +|... ++.. +|+ |.++
T Consensus 402 SRQlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~l 481 (877)
T COG0525 402 SRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDL 481 (877)
T ss_pred eeeeecCcccceEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCcc
Confidence 224469999999987 55210 1111 221 6789
Q ss_pred EEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCC
Q 009321 240 HGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRS 316 (537)
Q Consensus 240 h~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~ 316 (537)
.+.|.|++||+....+.++..+.++ ||..+.+ ||+|.. +|+|||||+||+|.|.|++++||+|+|||++++. +.++
T Consensus 482 lvtG~DIIffWvarmi~~~~~~~~~~PFk~V~i-hGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~ 560 (877)
T COG0525 482 LVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYI-HGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGR 560 (877)
T ss_pred ccccchhhHHHHHHHHHHHHHhcCCCCccEEEE-eeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCc
Confidence 9999999999998888888888775 7888855 599998 8999999999999999999999999999999997 9999
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC----CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHH
Q 009321 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (537)
Q Consensus 317 ~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~ 392 (537)
|++|+++.++..+|...++||+.+.+...+...... ......++|++..++++.+.++++| ++|++..|... |+
T Consensus 561 Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~-ly 638 (877)
T COG0525 561 DINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA-LY 638 (877)
T ss_pred ccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HH
Confidence 999999999999999999999877665544332211 1113678999999999999999999 89999999999 99
Q ss_pred HHHH--HHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHH
Q 009321 393 DALK--FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 393 ~l~~--~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
+|+- .++.|++-.++..... ...+......+..+|..++.+|- |+|. .++++|+.+..
T Consensus 639 ~F~W~~fcD~YlEl~K~~l~~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPf-iTEei~q~l~~ 699 (877)
T COG0525 639 EFIWNDFCDWYLELAKPRLYGG-EEEKRAARATLYYVLDTLLRLLHPFMPF-ITEEIWQKLPG 699 (877)
T ss_pred HHhHHHHHHHHHHHhhhhhcCc-HHHHHHHHHHHHHHHHHHHHHhCCCCcc-chHHHHHhcCC
Confidence 9984 4688888777532222 22334555667788889999995 9998 78999998755
No 30
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-42 Score=393.35 Aligned_cols=406 Identities=16% Similarity=0.188 Sum_probs=289.7
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHH----HHHHHHcCCChHH-----------
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI----IRRANDLGENPLS----------- 104 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki----~~~a~~~g~~~~~----------- 104 (537)
..+....|+|+|.|||||++++++.|+++||.|++|++|.|+.|+|.+|.++ ...+.+.|+++.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~ 117 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVW 117 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHH
Confidence 4444556677799999999999999999999999999999999999999754 4444445777654
Q ss_pred -HHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCC-------C----C
Q 009321 105 -LSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN-------Y----G 169 (537)
Q Consensus 105 -~~~~~~~~~~~~l~~L~i~~~~~~~r~s---~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~-------y----g 169 (537)
++++|.+.+.+.+++||++.+-...+.| .+...++.+|.+|.++|++|++...|+||+.+... | |
T Consensus 118 ~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~ 197 (874)
T PRK05729 118 EWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKG 197 (874)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccccc
Confidence 5999999999999999998532222222 78899999999999999999999999999874110 0 0
Q ss_pred C------------------------------------------Ccchhch----------------hhhcCCCccccccc
Q 009321 170 R------------------------------------------LSGQRLE----------------NNRAGERVAVDSRK 191 (537)
Q Consensus 170 ~------------------------------------------ls~~~l~----------------~~~~g~~~~~~~~k 191 (537)
. |.+..+. ++..|+.+.-...-
T Consensus 198 ~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pa 277 (874)
T PRK05729 198 KLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPA 277 (874)
T ss_pred eEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCC
Confidence 0 0000000 00000000000000
Q ss_pred cCcccccc------------------------------------------------------------ccc---------
Q 009321 192 RNPADFAL------------------------------------------------------------WKA--------- 202 (537)
Q Consensus 192 ~~~~df~l------------------------------------------------------------wk~--------- 202 (537)
++|.||.+ |+.
T Consensus 278 h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~ 357 (874)
T PRK05729 278 HDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLS 357 (874)
T ss_pred CCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEec
Confidence 00001000 100
Q ss_pred ----------------------------------------ccCCCCccccCCCCCCCchhhhH-----------------
Q 009321 203 ----------------------------------------AKAGEPSWDSPWGPGRPGWHIEC----------------- 225 (537)
Q Consensus 203 ----------------------------------------~~~g~~~w~~~wG~g~PgW~iec----------------- 225 (537)
.++-.+++...||.+.|.|+.+-
T Consensus 358 ~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~ 437 (874)
T PRK05729 358 DQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKAL 437 (874)
T ss_pred CcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCcccccccccC
Confidence 00112345668999999876420
Q ss_pred -------------HHHH-HhhcC-----------CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-
Q 009321 226 -------------SAMS-AHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN- 278 (537)
Q Consensus 226 -------------s~~~-~~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~- 278 (537)
|... ...+| .+.|+|+.|+|++|+|....++++.++.+. |+.++++| |+|+.
T Consensus 438 ~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d~ 516 (874)
T PRK05729 438 LTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDE 516 (874)
T ss_pred eEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEECC
Confidence 0000 00112 267999999999999887777777777666 66788775 89985
Q ss_pred CCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-----
Q 009321 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH----- 352 (537)
Q Consensus 279 ~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~----- 352 (537)
+|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+....+.+.+|+++.+.+...+......
T Consensus 517 ~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~ 596 (874)
T PRK05729 517 QGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDP 596 (874)
T ss_pred CCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccccc
Confidence 9999999999999999999999999999999987 8999999999999998888888888655443332222111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHH
Q 009321 353 GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430 (537)
Q Consensus 353 ~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 430 (537)
......|++++..+..+...+.++| ++|++..|+.. |++|+ ..+|.|++..++|.. . . .+......+..+|+.
T Consensus 597 ~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~-l~~f~~~~~~~~Yle~~k~~l~-~-~-~~~~~~~~l~~~l~~ 671 (874)
T PRK05729 597 EELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARA-LYEFIWNEFCDWYLELAKPVLQ-E-A-AKRATRATLAYVLEQ 671 (874)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh-h-h-HHHHHHHHHHHHHHH
Confidence 1113457899999999999999999 89999999999 99998 578999998888742 1 1 123344566678888
Q ss_pred HHhhcc-cCCCCChHHHHHHHHH
Q 009321 431 VLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 431 ~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
++.+|. |+|. .++++|+.+..
T Consensus 672 ~~~lL~Pf~Pf-itEelw~~l~~ 693 (874)
T PRK05729 672 ILRLLHPFMPF-ITEELWQKLAP 693 (874)
T ss_pred HHHHHcccchh-hHHHHHHhccc
Confidence 888885 8888 79999998853
No 31
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.5e-44 Score=363.76 Aligned_cols=266 Identities=18% Similarity=0.158 Sum_probs=202.6
Q ss_pred EeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCC
Q 009321 44 VCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCL 123 (537)
Q Consensus 44 ~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~ 123 (537)
+..|+|+|.+||||+|+++.+|+++|++|++|++|.|+.|+||+|+||+.+|++.|+++++++++|.+.|.+++++|||.
T Consensus 6 ~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~ 85 (314)
T cd00812 6 VMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFS 85 (314)
T ss_pred cCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 33466669999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCC--ccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCC-----cchhchhhhcCCCccccccccCc
Q 009321 124 PPTY--QPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRL-----SGQRLENNRAGERVAVDSRKRNP 194 (537)
Q Consensus 124 ~~~~--~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~l-----s~~~l~~~~~g~~~~~~~~k~~~ 194 (537)
+|. +.+++ +|++.++.++.+|.++|++|++.+.+|||..+.--|=++ .+...+.+... ..-.+..+
T Consensus 86 -~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~-~~~p~~~~--- 160 (314)
T cd00812 86 -YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKL-DGWPEEVR--- 160 (314)
T ss_pred -eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhc-CcCCHHHH---
Confidence 453 33443 688889999999999999999999999995542112122 11111111111 00000001
Q ss_pred ccccccccccCCCCccccCCCCCCC-chhhhHHHHHH---------------------------hhcCCCeeEEEecccC
Q 009321 195 ADFALWKAAKAGEPSWDSPWGPGRP-GWHIECSAMSA---------------------------HYLSSKFDIHGGGIDL 246 (537)
Q Consensus 195 ~df~lwk~~~~g~~~w~~~wG~g~P-gW~iecs~~~~---------------------------~~~g~~~dih~~G~Dl 246 (537)
..+..|.. ++++.+||+++| +|+++|...+. .+| .+.|||++|+|+
T Consensus 161 ~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w-~p~di~v~G~D~ 234 (314)
T cd00812 161 AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW-YPVDIYIGGKEH 234 (314)
T ss_pred HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHh-CCCeeeecchhH
Confidence 12333443 678889999999 46666532111 011 268999999999
Q ss_pred cCcchhH---HHHHHhhccC---CCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCccc
Q 009321 247 IFPHHEN---EIAQSCAACQ---DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNY 320 (537)
Q Consensus 247 ~fpH~~~---~~a~~~a~~~---~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~f 320 (537)
+++|+.+ +.+.+.+++. .++.++ +++|||+++|+|||||+||+|++.|+++++++|++|||+++... ++.+|
T Consensus 235 i~~h~~~~~~~~~~l~~~g~~~~~~~~~~-~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f 312 (314)
T cd00812 235 APNHLLYSRFNHKALFDEGLVTDEPPKGL-IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADF 312 (314)
T ss_pred HHHHHHHHHHHHHHHcCcccccccCcHHh-eecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCC
Confidence 9999844 4455544442 444555 68899999999999999999999999999999999999999866 89999
Q ss_pred CH
Q 009321 321 SV 322 (537)
Q Consensus 321 s~ 322 (537)
++
T Consensus 313 ~~ 314 (314)
T cd00812 313 DW 314 (314)
T ss_pred CC
Confidence 75
No 32
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.4e-41 Score=389.53 Aligned_cols=201 Identities=17% Similarity=0.138 Sum_probs=167.2
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccC-CCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-C
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-H 313 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 313 (537)
|.|+|++|+||+++|+.++++++.|..+ .++++.|+|||||+++|+|||||+||+|+|.++++.||+|++||||++. +
T Consensus 573 P~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~ 652 (938)
T TIGR00395 573 PLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAE 652 (938)
T ss_pred CceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence 7899999999999999999999888755 4677888999999999999999999999999999999999999999997 9
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhh-HHHHH
Q 009321 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL-TGAFQ 392 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al-~~~L~ 392 (537)
+++|++|+++.+.++.+.+.++++++.++....... ........|++++..++.+...+.++| ++|+++.|+ .. ++
T Consensus 653 ~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~-~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~-l~ 729 (938)
T TIGR00395 653 TVQDADWKESEVEGTILRLERLYEFAEEITKESNLE-TGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYA-LF 729 (938)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHH-HH
Confidence 999999999999999999999998887765432210 001123457899999999999999999 899999999 77 99
Q ss_pred HHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 393 ~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+|+..+|.|+...+. +.. ..+..+|+.++.+|. |+|. .++++|++++
T Consensus 730 ~~~~~~n~Yl~~~~~---------~~~--~~l~~~l~~~~~LLaP~~P~-~aEeiw~~Lg 777 (938)
T TIGR00395 730 DLQADVDWYRRRGGV---------NHK--DVLARYLETWIKLLAPFAPH-FAEEMWEEVG 777 (938)
T ss_pred HHHHHHHHHHHhCcc---------hHH--HHHHHHHHHHHHHhcCcccH-HHHHHHHHcC
Confidence 999999988764221 111 135567777788885 8888 7899998874
No 33
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.6e-41 Score=382.45 Aligned_cols=408 Identities=16% Similarity=0.154 Sum_probs=286.0
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHH----HHHcCCC------------hH
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR----ANDLGEN------------PL 103 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~----a~~~g~~------------~~ 103 (537)
..+..+.|+|+|.+||||++++++.|+++||.|++||+|.|+.|+|.+|-++..+ +.+.|++ +.
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~ 169 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVW 169 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHH
Confidence 4444445788899999999999999999999999999999999999999877653 3344654 45
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeccceeecCCCC---------------
Q 009321 104 SLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------- 165 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~i~~~~~~~r~s---~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~--------------- 165 (537)
+++++|.+.+.+.+++||+..+-..++.| ++...++..|.+|.++|++|++...|+||+.+-
T Consensus 170 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~ 249 (958)
T PLN02943 170 EWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 249 (958)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccc
Confidence 67799999999999999998532233333 788999999999999999999999999998851
Q ss_pred -------CC--------------------------------CCCCc----------chhch-------hhhcCCCccccc
Q 009321 166 -------PN--------------------------------YGRLS----------GQRLE-------NNRAGERVAVDS 189 (537)
Q Consensus 166 -------~~--------------------------------yg~ls----------~~~l~-------~~~~g~~~~~~~ 189 (537)
+- |..+. ++.+- ++..|+.+-...
T Consensus 250 ~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~ 329 (958)
T PLN02943 250 TLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKIS 329 (958)
T ss_pred cEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeC
Confidence 00 00000 00000 000010000000
Q ss_pred cccCcccccc--------------------------------------------------------cccc----------
Q 009321 190 RKRNPADFAL--------------------------------------------------------WKAA---------- 203 (537)
Q Consensus 190 ~k~~~~df~l--------------------------------------------------------wk~~---------- 203 (537)
.-+++.||.+ |+..
T Consensus 330 Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~Q 409 (958)
T PLN02943 330 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQ 409 (958)
T ss_pred CCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccc
Confidence 0001111110 1000
Q ss_pred ----------------cCC-----------------------CCccccCCCCCCCchhhh---HHH--------------
Q 009321 204 ----------------KAG-----------------------EPSWDSPWGPGRPGWHIE---CSA-------------- 227 (537)
Q Consensus 204 ----------------~~g-----------------------~~~w~~~wG~g~PgW~ie---cs~-------------- 227 (537)
..+ .+++...||.+.|.|+++ |+.
T Consensus 410 WFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~ 489 (958)
T PLN02943 410 WFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEK 489 (958)
T ss_pred eeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHH
Confidence 001 123345799999999863 321
Q ss_pred ----------HH--Hh--------------hcC------------CCeeEEEecccCcCcchhHHHHHHhhccCC-CCce
Q 009321 228 ----------MS--AH--------------YLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVS 268 (537)
Q Consensus 228 ----------~~--~~--------------~~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~ 268 (537)
+. .. .+| .|.|+++.|+|++|++....+++...+.++ |+.+
T Consensus 490 ~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~ 569 (958)
T PLN02943 490 AREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSY 569 (958)
T ss_pred hhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChhe
Confidence 00 00 012 267899999999876443333333333445 7788
Q ss_pred EEEEeeeee-eCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009321 269 YWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS 347 (537)
Q Consensus 269 ~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~ 347 (537)
+|+| |+++ .+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+++.+.+...+.
T Consensus 570 v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~ 648 (958)
T PLN02943 570 VYLH-GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLP 648 (958)
T ss_pred EEEe-ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9887 6776 5999999999999999999999999999999999988999999999999988888889987766655332
Q ss_pred cc-------------ccCC----CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhccc
Q 009321 348 PF-------------QEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKK 408 (537)
Q Consensus 348 ~~-------------~~~~----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~ 408 (537)
.. .... .....|+|++..++.+.+.+.++| ++|++..|+.. +++|+ ..+|.|++..+++
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~d~YiE~~Kpr 726 (958)
T PLN02943 649 SQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGRE-IYDFFWSDFADWYIEASKTR 726 (958)
T ss_pred cccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHH-HHHHHHHHHHHHHHHhccHh
Confidence 10 0000 112457899999999999999999 99999999999 99995 7789999988875
Q ss_pred Cchhh-hHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 409 QPKQQ-QLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 409 ~~~~~-~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
..... ...+......+..++..++.+|. |+|. .++++|+++.
T Consensus 727 l~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPf-itEELwq~L~ 770 (958)
T PLN02943 727 LYHSGDNSALSRAQAVLLYVFENILKLLHPFMPF-VTEELWQALP 770 (958)
T ss_pred hccCCchHHHHHHHHHHHHHHHHHHHHHhCcchh-HHHHHHHHcC
Confidence 32211 11223334455567777888885 8998 7999999984
No 34
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.7e-41 Score=386.28 Aligned_cols=407 Identities=14% Similarity=0.158 Sum_probs=282.2
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH-----cCCC------------
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN------------ 101 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~-----~g~~------------ 101 (537)
+..|+...|+++|.+||||++++++.|+++||.|++|++|.|+.|+|++|.++....++ .|.+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~ 128 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLER 128 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHH
Confidence 35555666777899999999999999999999999999999999999999988665533 2433
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeccceeecCCCCC-------CC---
Q 009321 102 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NY--- 168 (537)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s---~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~-------~y--- 168 (537)
+++++++|.+.+.+.+++||+..+-..++.| +|...++.+|.+|.++|++|++...|+||+.+-. .|
T Consensus 129 ~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~ 208 (1052)
T PRK14900 129 VWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEA 208 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCC
Confidence 3558899999999999999998532222322 7899999999999999999999999999987510 01
Q ss_pred --CC------------------------------------------C---------cchh---c-----hhhhcCCCccc
Q 009321 169 --GR------------------------------------------L---------SGQR---L-----ENNRAGERVAV 187 (537)
Q Consensus 169 --g~------------------------------------------l---------s~~~---l-----~~~~~g~~~~~ 187 (537)
|. | .+.. + -++..|+.+-.
T Consensus 209 ~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~ 288 (1052)
T PRK14900 209 HQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVK 288 (1052)
T ss_pred CCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEE
Confidence 00 0 0000 0 00000110000
Q ss_pred cccccCcccccccc------------------------------------------------------------cc----
Q 009321 188 DSRKRNPADFALWK------------------------------------------------------------AA---- 203 (537)
Q Consensus 188 ~~~k~~~~df~lwk------------------------------------------------------------~~---- 203 (537)
...-+++.||.+++ ..
T Consensus 289 ~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie 368 (1052)
T PRK14900 289 VTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILE 368 (1052)
T ss_pred ecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEE
Confidence 00000111111110 00
Q ss_pred ---------------------------------------------cCCCCccccCCCCCCCchhhh--------------
Q 009321 204 ---------------------------------------------KAGEPSWDSPWGPGRPGWHIE-------------- 224 (537)
Q Consensus 204 ---------------------------------------------~~g~~~w~~~wG~g~PgW~ie-------------- 224 (537)
++-.+++...||.++|.|+++
T Consensus 369 ~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~~ 448 (1052)
T PRK14900 369 PLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEAC 448 (1052)
T ss_pred EEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEecccccccc
Confidence 011123455799999999643
Q ss_pred --HH--------------------HHHHhhcC-----------CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEE
Q 009321 225 --CS--------------------AMSAHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYW 270 (537)
Q Consensus 225 --cs--------------------~~~~~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~ 270 (537)
|. .++. +| ++.|+|++|+|++++|....+++...+.+. ||.+++
T Consensus 449 ~~~~~~~~~~~~dVlDvWFdS~l~y~s~--~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~ 526 (1052)
T PRK14900 449 STCGKAELRQDEDVLDTWFSSGLWPFST--MGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVY 526 (1052)
T ss_pred cccCccceecCCceEEEEEcCChHHHHH--HcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeE
Confidence 10 0110 11 267999999999876554444444444455 556775
Q ss_pred EEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009321 271 MHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP 348 (537)
Q Consensus 271 ~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~ 348 (537)
+ ||||+. +|+|||||+||+|+|.|+++.||+|++||||++. ++++|++||++.+....+.+.+|+|+.+.+...+..
T Consensus 527 ~-hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~ 605 (1052)
T PRK14900 527 L-HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSG 605 (1052)
T ss_pred e-cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5 699998 9999999999999999999999999999999986 899999999999987777777788854333222222
Q ss_pred cc-cC-----CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHH
Q 009321 349 FQ-EH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIES 420 (537)
Q Consensus 349 ~~-~~-----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~ 420 (537)
.. .. ......|+++++.+..+...+.++| ++|++..|+.. +++|+ ..+|.|++..+++....+...+...
T Consensus 606 ~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~ 683 (1052)
T PRK14900 606 YQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANA-VYAFVWHELCDWYIELAKEALASEDPEARRSV 683 (1052)
T ss_pred cCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHhhhHHHHHhccHhhccCCHHHHHHH
Confidence 11 00 0113457899999999999999999 99999999999 99997 5789999987764322111112223
Q ss_pred HHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 421 LRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 421 l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
...+...|+.++.+|- |+|. .++++|+.+.
T Consensus 684 ~~~L~~~L~~l~~LLaPfmP~-~aEeiw~~L~ 714 (1052)
T PRK14900 684 QAVLVHCLQTSYRLLHPFMPF-ITEELWHVLR 714 (1052)
T ss_pred HHHHHHHHHHHHHHHHhHhHH-HHHHHHHHhc
Confidence 3455667777777775 8888 7899999885
No 35
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4e-42 Score=359.28 Aligned_cols=276 Identities=17% Similarity=0.174 Sum_probs=205.2
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHc---------CCCh-------HH
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL---------GENP-------LS 104 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~---------g~~~-------~~ 104 (537)
.+....|+|+|.+||||+++++.+|+++||+|++|++|.|++|+|+||.+|...|.++ +.++ ++
T Consensus 4 ~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
T cd00817 4 VIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWE 83 (382)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHH
Confidence 3444457777999999999999999999999999999999999999999999988764 3443 46
Q ss_pred HHHHHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC---------CCCCCCCc
Q 009321 105 LSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SPNYGRLS 172 (537)
Q Consensus 105 ~~~~~~~~~~~~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~---------~~~yg~ls 172 (537)
++++|++.|.+++++|||..+ +.+.+|+ +|.+.++.+|.+|.++|++|++...++||+.+ |..||.--
T Consensus 84 ~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~evc~~cg~~~ 163 (382)
T cd00817 84 WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDVI 163 (382)
T ss_pred HHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchhcccCCCeE
Confidence 899999999999999999842 2555665 78999999999999999999999999999875 33444200
Q ss_pred -----ch---hchhhhcCCCccccccccCcc---------ccccccc-ccCCCCccccCCCCCCCchhhh-H--------
Q 009321 173 -----GQ---RLENNRAGERVAVDSRKRNPA---------DFALWKA-AKAGEPSWDSPWGPGRPGWHIE-C-------- 225 (537)
Q Consensus 173 -----~~---~l~~~~~g~~~~~~~~k~~~~---------df~lwk~-~~~g~~~w~~~wG~g~PgW~ie-c-------- 225 (537)
.+ .+....+ . ..+..+.++. -+.-|.. ..+-.++++..||++.|.|+.+ |
T Consensus 164 ~~~~~~qwf~~l~~~~~--~-l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~ 240 (382)
T cd00817 164 EPLLKPQWFVKVKDLAK--K-ALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVARE 240 (382)
T ss_pred EEEecCeeEEehHHHHH--H-HHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecch
Confidence 00 0000000 0 0000111110 0111211 1233467788999999987532 1
Q ss_pred -----------------------------------H-HHHH-hh------c--CCCeeEEEecccCcCcchhHHHHHHhh
Q 009321 226 -----------------------------------S-AMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCA 260 (537)
Q Consensus 226 -----------------------------------s-~~~~-~~------~--g~~~dih~~G~Dl~fpH~~~~~a~~~a 260 (537)
+ .++. .+ | -.+.|+|++|+|++++|+.++++++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~ 320 (382)
T cd00817 241 EDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLK 320 (382)
T ss_pred hHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHH
Confidence 0 1110 11 1 136799999999999999999999998
Q ss_pred ccCC-CCceEEEEeeeee-eCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCccc
Q 009321 261 ACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 320 (537)
Q Consensus 261 ~~~~-~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~f 320 (537)
+.+. |+.++++| |+|+ .+|+|||||+||+|++.|++++||+|++|||+++. +..+|.+|
T Consensus 321 ~~g~~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 321 LTGKLPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred hhCCCchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 8775 45788775 8888 69999999999999999999999999999999997 68888876
No 36
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.8e-40 Score=375.29 Aligned_cols=408 Identities=16% Similarity=0.171 Sum_probs=286.1
Q ss_pred CcceEEEeCC--CCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHc------CCChH------
Q 009321 38 GKVGMYVCGV--TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL------GENPL------ 103 (537)
Q Consensus 38 ~~v~~y~~gP--t~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~------g~~~~------ 103 (537)
++-++++..| .++|.+||||++++++.|+++||.|++|++|.|+.|+|.||.+|+..+.++ +.++.
T Consensus 47 ~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c 126 (912)
T PRK05743 47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKC 126 (912)
T ss_pred CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHH
Confidence 4444555544 444999999999999999999999999999999999999999999999775 56665
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCC-------CCCC--
Q 009321 104 -SLSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NYGR-- 170 (537)
Q Consensus 104 -~~~~~~~~~~~~~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~-------~yg~-- 170 (537)
++++++.+.+.+++++||+..+ +....|. +|...++.+|.+|.++|++|++...|+||+.+-. .|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~ 206 (912)
T PRK05743 127 REYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKT 206 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccccc
Confidence 5999999999999999999632 3333333 7889999999999999999999999999988510 0000
Q ss_pred ---------C--------------------------------cchh-----------c----------------------
Q 009321 171 ---------L--------------------------------SGQR-----------L---------------------- 176 (537)
Q Consensus 171 ---------l--------------------------------s~~~-----------l---------------------- 176 (537)
+ .+.. .
T Consensus 207 s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 286 (912)
T PRK05743 207 SPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVL 286 (912)
T ss_pred CceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEE
Confidence 0 0000 0
Q ss_pred -----hhhhcCCC-----------------ccccc--------cccCccccccccc------------------------
Q 009321 177 -----ENNRAGER-----------------VAVDS--------RKRNPADFALWKA------------------------ 202 (537)
Q Consensus 177 -----~~~~~g~~-----------------~~~~~--------~k~~~~df~lwk~------------------------ 202 (537)
.++ .|.. |+.+. .-+.+.||.+++.
T Consensus 287 ~~~~G~~l-~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 365 (912)
T PRK05743 287 ATFKGKEL-EGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAG 365 (912)
T ss_pred EEechHhh-cCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCC
Confidence 000 0000 00000 0001112221110
Q ss_pred ------------------------------------cc------------------------------------------
Q 009321 203 ------------------------------------AK------------------------------------------ 204 (537)
Q Consensus 203 ------------------------------------~~------------------------------------------ 204 (537)
.+
T Consensus 366 l~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~ 445 (912)
T PRK05743 366 LFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIE 445 (912)
T ss_pred cCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHH
Confidence 00
Q ss_pred -------CCCCccccCCCCCCCchhhh-HH-------------------------------------H-H----------
Q 009321 205 -------AGEPSWDSPWGPGRPGWHIE-CS-------------------------------------A-M---------- 228 (537)
Q Consensus 205 -------~g~~~w~~~wG~g~PgW~ie-cs-------------------------------------~-~---------- 228 (537)
+-.+++..-||.++|-|+.+ |. . +
T Consensus 446 ~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvW 525 (912)
T PRK05743 446 SMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVW 525 (912)
T ss_pred HHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhh
Confidence 00012233599999988642 20 0 0
Q ss_pred -HH---h--h------cCCCeeEEEecccCcC--cchhHHHHHHhhccCCCCceEEEEeeeeee-CCccccccCCCcccH
Q 009321 229 -SA---H--Y------LSSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTI 293 (537)
Q Consensus 229 -~~---~--~------~g~~~dih~~G~Dl~f--pH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~ 293 (537)
.+ . . ...|.|+|.+|+|+++ +|+..+++... .+..||.++ +.|||++. +|+|||||+||+|+|
T Consensus 526 fdSg~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~v-l~HG~vld~~G~KMSKSlGNvIdP 603 (912)
T PRK05743 526 FDSGSSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQV-LTHGFTVDGKGRKMSKSLGNVIDP 603 (912)
T ss_pred hhhCCCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHh-cCCCcccee-EEeeeEECCCCCCCCCCCCCcCCH
Confidence 00 0 0 1247899999999998 45666665554 233466666 55699997 999999999999999
Q ss_pred HHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCCCCCChHHHHHHH
Q 009321 294 RQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCIN 367 (537)
Q Consensus 294 ~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~l~~~l~ 367 (537)
.+++++||+|++|||+++.++++|++||++.+.+..+.+.+|+++++.+.+.+...... ......|++++..++
T Consensus 604 ~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~ 683 (912)
T PRK05743 604 QDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLA 683 (912)
T ss_pred HHHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777888888877666554432110 011345789999999
Q ss_pred HHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhccc--CchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCC
Q 009321 368 KLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKK--QPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGA 442 (537)
Q Consensus 368 ~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~ 442 (537)
++.+.+.++| ++|+++.|+.. |++|+ ...|.|++..+++ ...+....+......+..+|..++.+|. |+|. .
T Consensus 684 ~~~~~v~~~~-e~~~f~~a~~~-l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~-~ 760 (912)
T PRK05743 684 ELQEEILEAY-ENYDFHKVYQK-LHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSF-T 760 (912)
T ss_pred HHHHHHHHHH-HhcCHHHHHHH-HHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-H
Confidence 9999999999 99999999999 99999 4558888877764 2211222233223344556666777775 8888 7
Q ss_pred hHHHHHHHH
Q 009321 443 YSEVLQQLK 451 (537)
Q Consensus 443 ~~~~~~~~~ 451 (537)
++++|+++.
T Consensus 761 aEelw~~l~ 769 (912)
T PRK05743 761 AEEIWQYLP 769 (912)
T ss_pred HHHHHHhcc
Confidence 899999884
No 37
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.4e-39 Score=365.98 Aligned_cols=386 Identities=17% Similarity=0.197 Sum_probs=277.5
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
++|++++.|| |.+||||+++++++|+++||+|++|++|.|++|+|+||.+|+.+|.+.|.++.++++++++.|.+.|+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5777764455 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC-------------CCCCCCC-----------
Q 009321 119 DLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRL----------- 171 (537)
Q Consensus 119 ~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-------------~~~yg~l----------- 171 (537)
+||+..+ +.+.+|+ +|.+.++.+|.+|.++|++|++...|+||+.+ |+.||..
T Consensus 113 ~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~ 192 (805)
T PRK00390 113 SLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFL 192 (805)
T ss_pred HhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeE
Confidence 9999842 2344544 89999999999999999999999999999885 2333210
Q ss_pred --cc--------------------------------h----hch---h-h---------h--------------------
Q 009321 172 --SG--------------------------------Q----RLE---N-N---------R-------------------- 180 (537)
Q Consensus 172 --s~--------------------------------~----~l~---~-~---------~-------------------- 180 (537)
+. . .+. . + .
T Consensus 193 ~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~ 272 (805)
T PRK00390 193 KITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAE 272 (805)
T ss_pred ecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhc
Confidence 00 0 000 0 0 0
Q ss_pred -------------------------------cCCCc-----------------ccc--------ccccCcccccccccc-
Q 009321 181 -------------------------------AGERV-----------------AVD--------SRKRNPADFALWKAA- 203 (537)
Q Consensus 181 -------------------------------~g~~~-----------------~~~--------~~k~~~~df~lwk~~- 203 (537)
.|..+ +.+ ..-+++.||.+++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~ 352 (805)
T PRK00390 273 QNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYG 352 (805)
T ss_pred chHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcC
Confidence 00000 000 000111233332210
Q ss_pred ----------------------cCC-----------------------------------------CCccccCCCCCCCc
Q 009321 204 ----------------------KAG-----------------------------------------EPSWDSPWGPGRPG 220 (537)
Q Consensus 204 ----------------------~~g-----------------------------------------~~~w~~~wG~g~Pg 220 (537)
..| .+++..-||.++|-
T Consensus 353 L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi 432 (805)
T PRK00390 353 LPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPI 432 (805)
T ss_pred CCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeE
Confidence 000 01233459999998
Q ss_pred hhh-hHHH------------------------------------------H------------HHhh---cC--------
Q 009321 221 WHI-ECSA------------------------------------------M------------SAHY---LS-------- 234 (537)
Q Consensus 221 W~i-ecs~------------------------------------------~------------~~~~---~g-------- 234 (537)
||. +|.. + |+.+ ++
T Consensus 433 ~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~ 512 (805)
T PRK00390 433 IHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAP 512 (805)
T ss_pred EEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCc
Confidence 874 2311 0 0000 11
Q ss_pred ---------CCeeEEEecccCcCcchhHHH---HHH--hh-ccC-CCCceEEEEeeeeeeCCccccccCCCcccHHHHHH
Q 009321 235 ---------SKFDIHGGGIDLIFPHHENEI---AQS--CA-ACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 298 (537)
Q Consensus 235 ---------~~~dih~~G~Dl~fpH~~~~~---a~~--~a-~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~ 298 (537)
.|+|+..+|.|++.-|..+.. ..+ .+ ..+ .|+.++ +||||| |||||+||+|+|.++++
T Consensus 513 ~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G~v-----KMSKS~GN~i~p~~~i~ 586 (805)
T PRK00390 513 FDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQGMV-----KMSKSKGNVVDPDDIIE 586 (805)
T ss_pred CChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecCcE-----EeCCCCCCCCCHHHHHH
Confidence 368999999997533332221 111 11 123 466666 889999 99999999999999999
Q ss_pred HcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 009321 299 RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377 (537)
Q Consensus 299 ~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am 377 (537)
+||+|++|||+++. +++++++|+++.+.++.+.+.+|++++....+...... ......|++++..++++...+.++|
T Consensus 587 ~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~ 664 (805)
T PRK00390 587 KYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--VAALSEDKELRRKLHKTIKKVTEDI 664 (805)
T ss_pred HcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--cccChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 99999999999999999999999988776332221111 1123467999999999999999999
Q ss_pred HcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 378 ~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
++|+++.|++. |++|+..+++|+... ....+..++..++.+|. |+|. .++++|+.+.
T Consensus 665 -e~~~f~~ai~~-l~~f~n~lsk~~~~~--------------~~~~l~~~l~~l~~lLaPf~P~-iaEElw~~L~ 722 (805)
T PRK00390 665 -ERLRFNTAIAA-LMELVNALYKAEDEQ--------------DKAVLREALEILVRLLAPFAPH-LAEELWEKLG 722 (805)
T ss_pred -HcCCHHHHHHH-HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcC
Confidence 78999999999 999999999987210 11234556777777775 7887 7899998874
No 38
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.6e-41 Score=345.80 Aligned_cols=275 Identities=21% Similarity=0.235 Sum_probs=200.0
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHc-CCCh----------------
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GENP---------------- 102 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~-g~~~---------------- 102 (537)
..+....|||||++||||+|+++++|+++|++|++|++|.|++|+||||.+|..+|.+. |.++
T Consensus 3 f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~ 82 (338)
T cd00818 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKC 82 (338)
T ss_pred eEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHH
Confidence 34566679999999999999999999999999999999999999999999999888775 7654
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCC-C--CccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--CC----CCCCCcc
Q 009321 103 LSLSNRYCQEYLVDMADLQCLPP-T--YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SP----NYGRLSG 173 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~i~~~-~--~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--~~----~yg~ls~ 173 (537)
++++++|++.|.+++++|||..+ + ..+..++|++.++++|.+|+++|++|++++.+||.+.. .+ ++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~ 162 (338)
T cd00818 83 REFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKD 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHH
Confidence 79999999999999999999643 2 23334599999999999999999999999999993221 11 1111111
Q ss_pred hhchhhhcCCCccccccccCccccccccc-ccCCCCccccCCCCCCCchhhh-HH--------------------HHHHh
Q 009321 174 QRLENNRAGERVAVDSRKRNPADFALWKA-AKAGEPSWDSPWGPGRPGWHIE-CS--------------------AMSAH 231 (537)
Q Consensus 174 ~~l~~~~~g~~~~~~~~k~~~~df~lwk~-~~~g~~~w~~~wG~g~PgW~ie-cs--------------------~~~~~ 231 (537)
.-++.+ ....+-.+..+. .+.-|.. .++-.++++..||.+.|.|.++ |+ .++..
T Consensus 163 ~l~~~~-~~~~~~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~ 238 (338)
T cd00818 163 RLLEAN-DKVNWIPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL 238 (338)
T ss_pred HHHHHH-hcCcEECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc
Confidence 111111 110000000011 1111221 1233467778899999987543 30 11111
Q ss_pred -h------cC--CCeeEEEecccCcC--cchhHHHHHHhhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHHH
Q 009321 232 -Y------LS--SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 232 -~------~g--~~~dih~~G~Dl~f--pH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~ 299 (537)
+ |. .+.|+++.|+|+++ +|...+++.. +.+..||.++++| |+++. +|+|||||+||+|++.|+++.
T Consensus 239 ~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~h-g~~~~~~g~KmSKS~gn~i~~~~~~~~ 316 (338)
T cd00818 239 HYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVH-GFVLDEDGRKMSKSLGNYVDPQEVVDK 316 (338)
T ss_pred CCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEE-eeEECCCCCCCCCCCCCcCCHHHHHHH
Confidence 1 11 36789999999997 6776766654 2334567888776 77765 899999999999999999999
Q ss_pred cCchhhHHHHhhc-CcCCCccc
Q 009321 300 YHPLALRHFLISA-HYRSPLNY 320 (537)
Q Consensus 300 ~~~d~lR~~ll~~-~~~~~~~f 320 (537)
|++|++|||+++. +..+|++|
T Consensus 317 ~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 317 YGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred cCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999997 68888876
No 39
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-39 Score=372.92 Aligned_cols=407 Identities=19% Similarity=0.198 Sum_probs=284.2
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH-cCCC----------------h
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGEN----------------P 102 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~-~g~~----------------~ 102 (537)
-.++...|+++|.+||||++++++.|+++||.|++||+|.++.|+|.||.+|+..+.+ .|++ +
T Consensus 43 f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c 122 (975)
T PRK06039 43 FVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKC 122 (975)
T ss_pred EEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHH
Confidence 4555556777799999999999999999999999999999999999999999999976 4654 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeccceeecCCCCC---------CCCC
Q 009321 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP---------NYGR 170 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s---~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~---------~yg~ 170 (537)
.+++.+|.+.+.+.+++||+..+-..+..| ++.+.++..|.+|.++|++|++...|+||+.+-. .|..
T Consensus 123 ~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~ 202 (975)
T PRK06039 123 RESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKD 202 (975)
T ss_pred HHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccc
Confidence 799999999999999999987432222223 7889999999999999999999999999988510 0100
Q ss_pred -----------C--------------------------cchh-----------c-----------------------hhh
Q 009321 171 -----------L--------------------------SGQR-----------L-----------------------ENN 179 (537)
Q Consensus 171 -----------l--------------------------s~~~-----------l-----------------------~~~ 179 (537)
+ .+.. . .++
T Consensus 203 ~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L 282 (975)
T PRK06039 203 VKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSEL 282 (975)
T ss_pred cCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccc
Confidence 0 0000 0 000
Q ss_pred -----------------------------hcCCCccccccccCcccccccccc---------------------------
Q 009321 180 -----------------------------RAGERVAVDSRKRNPADFALWKAA--------------------------- 203 (537)
Q Consensus 180 -----------------------------~~g~~~~~~~~k~~~~df~lwk~~--------------------------- 203 (537)
..|+.+-....-..+.||.+++..
T Consensus 283 ~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~ 362 (975)
T PRK06039 283 EGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVK 362 (975)
T ss_pred cCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHH
Confidence 000000000000011122211100
Q ss_pred ---------------------------------------------------------------------c----------
Q 009321 204 ---------------------------------------------------------------------K---------- 204 (537)
Q Consensus 204 ---------------------------------------------------------------------~---------- 204 (537)
+
T Consensus 363 eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~ 442 (975)
T PRK06039 363 DADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLEN 442 (975)
T ss_pred HhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhc
Confidence 0
Q ss_pred --CCCCccccCCCCCCCchhhh-HHH----------------------------------------H------------H
Q 009321 205 --AGEPSWDSPWGPGRPGWHIE-CSA----------------------------------------M------------S 229 (537)
Q Consensus 205 --~g~~~w~~~wG~g~PgW~ie-cs~----------------------------------------~------------~ 229 (537)
+-.+++...||.+.|.|+++ |.. | |
T Consensus 443 l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdS 522 (975)
T PRK06039 443 ARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDS 522 (975)
T ss_pred CccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceeec
Confidence 00112344699999999764 410 0 0
Q ss_pred ----HhhcC------------CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcc
Q 009321 230 ----AHYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFF 291 (537)
Q Consensus 230 ----~~~~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i 291 (537)
...+| .|.|++..|+|+++++.-.....+.++.+. ||.++++ ||||+. +|+|||||+||+|
T Consensus 523 g~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~-hG~Vld~~G~KMSKSlGNvI 601 (975)
T PRK06039 523 GSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLV-HGHVLDEDGQKMSKSLGNYV 601 (975)
T ss_pred CCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEE-eeeEECCCCCCcCCCCCCcC
Confidence 00011 267899999998886554444444555554 7778855 599987 9999999999999
Q ss_pred cHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHH-HHHHHHHHHHHHHHHHHHHHhc--CccccC------CCCCCCChH
Q 009321 292 TIRQITERYHPLALRHFLISA-HYRSPLNYSVLQ-LDSASDAVFYIYQTLQDCEVAL--SPFQEH------GKTARINPA 361 (537)
Q Consensus 292 ~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~-l~~~~~~l~~l~~~~~~~~~~l--~~~~~~------~~~~~~~~~ 361 (537)
+|.+++++||+|++|||+++. +.++|++||++. +....+.+.+|+|+++++..+. ...... ......|++
T Consensus 602 dP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~w 681 (975)
T PRK06039 602 DPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRW 681 (975)
T ss_pred CHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHH
Confidence 999999999999999999998 469999999999 5555666777888776654221 111000 111345789
Q ss_pred HHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHH-HHHHhhh--cccCchhhhHHHHHHHHHHHHHHHHHHhhcc-c
Q 009321 362 AEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NSSLNML--KKKQPKQQQLSLIESLRKIENEVKEVLRILG-L 437 (537)
Q Consensus 362 l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~-N~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i 437 (537)
+++.++.+...+.++| ++|+++.|+.. |++|+..+ |.|++.. ++|...+ ...+......+..+|..++.+|. |
T Consensus 682 ils~l~~li~~v~~a~-e~y~~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf 758 (975)
T PRK06039 682 ILSRLNSLVKEVTEAL-DNYDITKAARA-IRDFVDDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPF 758 (975)
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 89999999999 99999877 6676654 4564321 12233344556667777788885 8
Q ss_pred CCCCChHHHHHHHH
Q 009321 438 LPPGAYSEVLQQLK 451 (537)
Q Consensus 438 ~~~~~~~~~~~~~~ 451 (537)
+|. .++++|+.+.
T Consensus 759 ~Pf-~aEei~~~L~ 771 (975)
T PRK06039 759 TPF-IAEEIYQNLT 771 (975)
T ss_pred hHH-HHHHHHHhcc
Confidence 888 7899999885
No 40
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=5.6e-39 Score=363.60 Aligned_cols=393 Identities=17% Similarity=0.174 Sum_probs=280.1
Q ss_pred CcceEEEeC--CCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~g--Pt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++-++|++. |+|+|.+||||+++++++|+++||+|++||+|.|++|+|+||.+|+.+|.+.|+++.++++++++.+.+
T Consensus 27 ~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 27 NKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455577775 445599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCCCCc------
Q 009321 116 DMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLS------ 172 (537)
Q Consensus 116 ~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg~ls------ 172 (537)
.|++||+..+ +.+.+++ +|.+.++.+|.+|.++|++|++...|+||+.+ |..||.-.
T Consensus 107 ~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~ 186 (842)
T TIGR00396 107 QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELK 186 (842)
T ss_pred HHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecc
Confidence 9999999842 3344554 79999999999999999999999999999875 22232200
Q ss_pred ---------------------------------------ch----hchh----hh-------------------------
Q 009321 173 ---------------------------------------GQ----RLEN----NR------------------------- 180 (537)
Q Consensus 173 ---------------------------------------~~----~l~~----~~------------------------- 180 (537)
+. .+.. +.
T Consensus 187 ~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~ 266 (842)
T TIGR00396 187 QWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVE 266 (842)
T ss_pred eeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHH
Confidence 00 0000 00
Q ss_pred -----------------------------------cCCC---------c--------ccc--------ccccCccccccc
Q 009321 181 -----------------------------------AGER---------V--------AVD--------SRKRNPADFALW 200 (537)
Q Consensus 181 -----------------------------------~g~~---------~--------~~~--------~~k~~~~df~lw 200 (537)
.|.. + ..+ ..-+++.||.++
T Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~ 346 (842)
T TIGR00396 267 KIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFA 346 (842)
T ss_pred hhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHH
Confidence 0000 0 000 000112344333
Q ss_pred ccc--------c-------------CC-----------------------------------------CCccccCCCCCC
Q 009321 201 KAA--------K-------------AG-----------------------------------------EPSWDSPWGPGR 218 (537)
Q Consensus 201 k~~--------~-------------~g-----------------------------------------~~~w~~~wG~g~ 218 (537)
+.. . .| .+++..-||.++
T Consensus 347 ~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PI 426 (842)
T TIGR00396 347 QKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPI 426 (842)
T ss_pred HHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCce
Confidence 210 0 00 012234599999
Q ss_pred Cchhhh-HHHH-------------------------------------------------------HHh----h------
Q 009321 219 PGWHIE-CSAM-------------------------------------------------------SAH----Y------ 232 (537)
Q Consensus 219 PgW~ie-cs~~-------------------------------------------------------~~~----~------ 232 (537)
|-||.+ |..+ |+. |
T Consensus 427 Pi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~ 506 (842)
T TIGR00396 427 PIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNT 506 (842)
T ss_pred EEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCc
Confidence 988752 3100 000 0
Q ss_pred --------c--CCCeeEEEecccCcCcchhHHH---HHHh---hccC-CCCceEEEEeeeeee-----CCc---------
Q 009321 233 --------L--SSKFDIHGGGIDLIFPHHENEI---AQSC---AACQ-DSNVSYWMHNGHVTN-----NNE--------- 281 (537)
Q Consensus 233 --------~--g~~~dih~~G~Dl~fpH~~~~~---a~~~---a~~~-~~~~~~~~h~g~v~~-----~G~--------- 281 (537)
+ -.|+|+..+|.||+.-|..+.. ..+. ...+ .|+.++ +.+|||+. +|+
T Consensus 507 ~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l-~~~G~Vl~~~~~~~G~~~~~~~~~~ 585 (842)
T TIGR00396 507 DQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL-INQGMVLGFYYPPNGKSPPDELTER 585 (842)
T ss_pred CCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH-hccceEEeeeecCCCCccChhhhcc
Confidence 0 0278999999997644433311 1111 1223 467777 66799997 788
Q ss_pred ------------------cccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 009321 282 ------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDC 342 (537)
Q Consensus 282 ------------------KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~ 342 (537)
|||||+||+|+|.+++++||+|++|||+++. +++++++|+++.+..+.+.+.+|++++..+
T Consensus 586 ~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~ 665 (842)
T TIGR00396 586 DEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNI 665 (842)
T ss_pred ccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999965 999999999999999999999999988776
Q ss_pred HHhcCccc--cCCCCCCCChHHHHHHHHHHHHHHHHHHcccC-chhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHH
Q 009321 343 EVALSPFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLN-TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIE 419 (537)
Q Consensus 343 ~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n-~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~ 419 (537)
.+.+.... ........+++++..++++...+.++| ++++ ++.|++. |++|+..++++...
T Consensus 666 ~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~-l~~f~n~L~~~~~~--------------- 728 (842)
T TIGR00396 666 LGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISA-MMILLNALYKAKKD--------------- 728 (842)
T ss_pred HhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHHHhhhhH---------------
Confidence 55443211 001123467899999999999999999 7767 8999999 99999776654210
Q ss_pred HHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 420 SLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 420 ~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
..+..+|..++.+|. |+|. .++++|+.+.
T Consensus 729 --~~l~~~l~~ll~lLaPf~Ph-iaEElW~~l~ 758 (842)
T TIGR00396 729 --ALYLEYLKGFLTVLSPFAPH-LAEELWEKLG 758 (842)
T ss_pred --HHHHHHHHHHHHHHhhhhhH-HHHHHHHHhC
Confidence 124456667777775 7777 7888998774
No 41
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=7e-39 Score=370.92 Aligned_cols=215 Identities=15% Similarity=0.167 Sum_probs=168.1
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhcC
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 313 (537)
.|.|+++-|+|+++.|.-...+++.++++.+|.+.+++|||++. +|+|||||+||+|+|.+++++||+|+||||+++.+
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSP 645 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCC
Confidence 36899999999999765444556666667655555588899999 89999999999999999999999999999999875
Q ss_pred c--CCCcccCHHHHHHHHH-HHHHHHHHHHHHHHhcCcc--------ccC------CCCCCCChHHHHHHHHHHHHHHHH
Q 009321 314 Y--RSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPF--------QEH------GKTARINPAAEDCINKLRDEFHAR 376 (537)
Q Consensus 314 ~--~~~~~fs~~~l~~~~~-~l~~l~~~~~~~~~~l~~~--------~~~------~~~~~~~~~l~~~l~~~~~~v~~a 376 (537)
+ .++++|+++.+.+..+ .+..++|++..+...+... .+. ......|+|+++.++++.+.+.++
T Consensus 646 ~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~ 725 (1159)
T PLN02882 646 VVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREE 725 (1159)
T ss_pred cccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 6889999999987654 5677778766555443221 010 011345889999999999999999
Q ss_pred HHcccCchhhhHHHHHHHHH-HHHHHHhhhcccCchh-hhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHH
Q 009321 377 MSDDLNTSHILTGAFQDALK-FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 377 m~dd~n~~~al~~~L~~l~~-~~N~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
| ++|++..|+.. |++|+. ..|.|++..++|...+ ....+...+..+..+|..++.+|. |+|. .++++|+++..
T Consensus 726 m-e~y~f~~A~~~-I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf-~aEeI~q~L~~ 801 (1159)
T PLN02882 726 M-GAYRLYTVVPY-LVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPF-FTEVLYQNLRK 801 (1159)
T ss_pred H-HccCHHHHHHH-HHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhcc
Confidence 9 99999999999 999997 5799999998875422 223344556677788888888885 8888 78999999853
No 42
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.5e-38 Score=364.39 Aligned_cols=213 Identities=21% Similarity=0.198 Sum_probs=171.3
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHH---------HcCch
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------RYHPL 303 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~---------~~~~d 303 (537)
.+.|+|..|+|++++|....+..+.++.+. ||.++|+| ||++. +|+|||||+||+|+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 468999999999998777777777777776 77899887 78877 89999999999999999999 79999
Q ss_pred hhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-----CCCCCCChHHHHHHHHHHHHHHHHHH
Q 009321 304 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMS 378 (537)
Q Consensus 304 ~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~v~~am~ 378 (537)
++|||+++.+|++|++|+.+.+.++.+.+.+|+++++.+.+.+...... ......|+++++.++++.+.+.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999988776655442210 0112358899999999999999999
Q ss_pred cccCchhhhHHHHHHH--HHHHHHHHhhhcccCchh--hhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 379 DDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQ--QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 379 dd~n~~~al~~~L~~l--~~~~N~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
++|+++.|+.. +++| ....|.|++..++|.... +...+......+..+|..++.+|. |+|. .++++|+.+.
T Consensus 721 e~y~f~~A~~~-i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf-~aEEiw~~L~ 796 (974)
T PLN02843 721 DNYQFFKIFQI-LQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPH-LAEDAWQNLP 796 (974)
T ss_pred HccCHHHHHHH-HHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcc
Confidence 99999999999 9988 568899999999875321 222233222334556666677774 8888 7899999885
No 43
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.1e-37 Score=359.05 Aligned_cols=408 Identities=16% Similarity=0.169 Sum_probs=290.3
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH-----cCCC------------h
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN------------P 102 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~-----~g~~------------~ 102 (537)
..|....|+++|.|||||++++++.|+++||.|++|++|.|+.|+|.+|.++...+.+ .|.+ +
T Consensus 130 f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~ 209 (1066)
T PLN02381 130 FVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEV 209 (1066)
T ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHH
Confidence 3444555666699999999999999999999999999999999999999999877754 3554 3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeccceeecCCCC--------------
Q 009321 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 165 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s---~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~-------------- 165 (537)
++++++|.+.+.+.+++||++.+-..++.| +|...++.+|.+|.++|++|++...|+||+.+-
T Consensus 210 ~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~ 289 (1066)
T PLN02381 210 WKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIK 289 (1066)
T ss_pred HHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccc
Confidence 588999999999999999998532222222 789999999999999999999999999997741
Q ss_pred -------CCC------CCC-------cc---------hhchhhh-----------------cCCC---------------
Q 009321 166 -------PNY------GRL-------SG---------QRLENNR-----------------AGER--------------- 184 (537)
Q Consensus 166 -------~~y------g~l-------s~---------~~l~~~~-----------------~g~~--------------- 184 (537)
|.+ |.+ .+ ..++.+. .|..
T Consensus 290 ~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d 369 (1066)
T PLN02381 290 ERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICD 369 (1066)
T ss_pred cchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEEC
Confidence 100 100 00 0000000 0000
Q ss_pred ---cccc--------ccccCcccccccccc--------------------------------------------------
Q 009321 185 ---VAVD--------SRKRNPADFALWKAA-------------------------------------------------- 203 (537)
Q Consensus 185 ---~~~~--------~~k~~~~df~lwk~~-------------------------------------------------- 203 (537)
|+.+ ..-+++.||.+++..
T Consensus 370 ~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~ 449 (1066)
T PLN02381 370 AILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNN 449 (1066)
T ss_pred CccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceee
Confidence 0000 000112222221100
Q ss_pred ----------------------------------------cCCC-----------------------CccccCCCCCCCc
Q 009321 204 ----------------------------------------KAGE-----------------------PSWDSPWGPGRPG 220 (537)
Q Consensus 204 ----------------------------------------~~g~-----------------------~~w~~~wG~g~Pg 220 (537)
..+. +++...||.++|.
T Consensus 450 ~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPi 529 (1066)
T PLN02381 450 EMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPA 529 (1066)
T ss_pred ecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccce
Confidence 0011 1223469999999
Q ss_pred hhhh--------HH--------H--------------------HH----------------HhhcC-----------CCe
Q 009321 221 WHIE--------CS--------A--------------------MS----------------AHYLS-----------SKF 237 (537)
Q Consensus 221 W~ie--------cs--------~--------------------~~----------------~~~~g-----------~~~ 237 (537)
|++. |. + +. ...+| .|.
T Consensus 530 w~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~ 609 (1066)
T PLN02381 530 WYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPT 609 (1066)
T ss_pred EEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCC
Confidence 9862 00 0 10 00123 368
Q ss_pred eEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHH-----------------
Q 009321 238 DIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE----------------- 298 (537)
Q Consensus 238 dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~----------------- 298 (537)
|+...|.|++|++....+.++.++.+. ||.++++ ||||+. +|+|||||+||+|+|.++++
T Consensus 610 d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~ 688 (1066)
T PLN02381 610 SVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 688 (1066)
T ss_pred eeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccc
Confidence 899999999998876667777766665 7778855 599997 89999999999999999999
Q ss_pred --------------------HcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cC----
Q 009321 299 --------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ-EH---- 352 (537)
Q Consensus 299 --------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~-~~---- 352 (537)
+||+|+||||+++. ...++++|+.+.+...++.+.+|+|+++.+...+.... ..
T Consensus 689 ~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~ 768 (1066)
T PLN02381 689 PKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLS 768 (1066)
T ss_pred hhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccC
Confidence 68999999999986 67889999999999888999999998876655443111 00
Q ss_pred -CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHH--HHHHHHHHhhhcccCchhh---hHHHHHHHHHHHH
Q 009321 353 -GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQQ---QLSLIESLRKIEN 426 (537)
Q Consensus 353 -~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l--~~~~N~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 426 (537)
......|+|+++.++.+...+.++| ++|++..|+.. +++| ...+|.|++..+++..... ...+......+..
T Consensus 769 ~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~ 846 (1066)
T PLN02381 769 VETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWI 846 (1066)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHH
Confidence 1113468999999999999999999 89999999999 9998 4568999999888643211 1122233344556
Q ss_pred HHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 427 EVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 427 ~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+|..++.+|. |+|. .++++|+.+.
T Consensus 847 vL~~llrLL~PfmPf-itEELw~~L~ 871 (1066)
T PLN02381 847 CLDTGLRLLHPFMPF-VTEELWQRLP 871 (1066)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHhh
Confidence 6777788885 8888 7899999885
No 44
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.6e-37 Score=355.94 Aligned_cols=209 Identities=19% Similarity=0.195 Sum_probs=157.1
Q ss_pred CeeEEEecccCcCc--chhHHHHHHhhccC-CCCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhh
Q 009321 236 KFDIHGGGIDLIFP--HHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 236 ~~dih~~G~Dl~fp--H~~~~~a~~~a~~~-~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~ 311 (537)
+.|+|++|+|++++ |...+++ .++.+ .||.++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||+++
T Consensus 564 P~d~~i~G~Di~r~Wf~~~~~~~--~~~~~~~P~k~v~~-hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~ 640 (861)
T TIGR00392 564 PADFILEGSDQTRGWFYSSLAIG--TALFGQAPYKNVIT-HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVAS 640 (861)
T ss_pred CceEEEEecchhccHHHHHHHHH--HHHcCCCChHhhEe-cceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 67999999999994 4444444 33434 56677755 599986 999999999999999999999999999999999
Q ss_pred cCcCCCcccCHHHHHHHHHHHHH-HHHHHHHHH--HhcCccccC------CCCCCCChHHHHHHHHHHHHHHHHHHcccC
Q 009321 312 AHYRSPLNYSVLQLDSASDAVFY-IYQTLQDCE--VALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLN 382 (537)
Q Consensus 312 ~~~~~~~~fs~~~l~~~~~~l~~-l~~~~~~~~--~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~v~~am~dd~n 382 (537)
.++.+|++|+++.+....+.+.+ ++|+++++. +.+.+.... ......+++++..+..+.+.+.++| ++|+
T Consensus 641 ~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~ 719 (861)
T TIGR00392 641 SDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYN 719 (861)
T ss_pred CCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 99999999999999887664443 444555554 444332110 1113457889999999999999999 8999
Q ss_pred chhhhHHHHHHHHHH--HHHHHhhhcc--cCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 383 TSHILTGAFQDALKF--INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 383 ~~~al~~~L~~l~~~--~N~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
++.|+.. +++|+.. .|.|++..++ |........+ .....+...++.++.+|. |+|. .++++|+.+.
T Consensus 720 ~~~a~~~-l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~-~aeeiw~~L~ 790 (861)
T TIGR00392 720 FHKVLRA-LQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPH-TAEEIYQNLP 790 (861)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhcc
Confidence 9999999 9999876 7889987754 6532222222 233445566677777775 8888 7899999885
No 45
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-37 Score=355.88 Aligned_cols=211 Identities=17% Similarity=0.125 Sum_probs=165.3
Q ss_pred CCeeEEEecccCcC--cchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHh
Q 009321 235 SKFDIHGGGIDLIF--PHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310 (537)
Q Consensus 235 ~~~dih~~G~Dl~f--pH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll 310 (537)
+|.|+|..|+|+++ ||. -..++.++.+. ||.++++| ||++. +|+|||||+||+|+|.+++++||+|++|||++
T Consensus 582 ~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 46889999999997 555 34555555565 66788665 99997 99999999999999999999999999999999
Q ss_pred hcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC------CCCCCChHHHHHHHHHHHHHHHHHHcccCch
Q 009321 311 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTS 384 (537)
Q Consensus 311 ~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~ 384 (537)
+.++++|++||++.+.+..+.+.+|+++++.+.+.+....... .....|++++..+.++.+.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 9899999999999999888888888888876666554432110 112357899999999999999999 999999
Q ss_pred hhhHHHHHHHH-HH-HHHHHhhhcccCch--hhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 385 HILTGAFQDAL-KF-INSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 385 ~al~~~L~~l~-~~-~N~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.|+.. +++|+ .. .|.|++..++|... .+...+......+..+|+.++.+|. |+|. .++++|+++.
T Consensus 738 ~a~~~-l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~-~aEeiw~~L~ 807 (961)
T PRK13804 738 RIYKA-LVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF-TAEEAWLYRY 807 (961)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhcc
Confidence 99999 99999 44 69999987765321 1222233333445566777777775 8888 7999999886
No 46
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=360.63 Aligned_cols=409 Identities=15% Similarity=0.152 Sum_probs=288.0
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHH-----HHcCCCh-----------
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-----NDLGENP----------- 102 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a-----~~~g~~~----------- 102 (537)
+..+....|+|+|.+||||++++++.|+++||.|++|++|.|+.|+|.+|-++.... .+.|.++
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~ 140 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKK 140 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHH
Confidence 345555567777999999999999999999999999999999999999998774332 3445543
Q ss_pred -HHHHHHHHHHHHHHHHHcCCCCCC-Cccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCC-------------
Q 009321 103 -LSLSNRYCQEYLVDMADLQCLPPT-YQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------- 165 (537)
Q Consensus 103 -~~~~~~~~~~~~~~l~~L~i~~~~-~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~------------- 165 (537)
++++++|.+.+.+.|++||+..+- ....|. +|...++.+|.+|.++|++|++...|+||+.+-
T Consensus 141 ~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~ 220 (995)
T PTZ00419 141 VWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEI 220 (995)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccc
Confidence 578999999999999999998531 333333 788999999999999999999999999998751
Q ss_pred --------CCC------CC-------Ccch-h--c-------hhhh-----------------cCC--------------
Q 009321 166 --------PNY------GR-------LSGQ-R--L-------ENNR-----------------AGE-------------- 183 (537)
Q Consensus 166 --------~~y------g~-------ls~~-~--l-------~~~~-----------------~g~-------------- 183 (537)
|.| |. +.+. . + +-+- .|.
T Consensus 221 ~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipi 300 (995)
T PTZ00419 221 EKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPI 300 (995)
T ss_pred cccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEE
Confidence 111 21 0000 0 0 0000 010
Q ss_pred -----Ccccc--------ccccCcccccccccc-----------------------------------------------
Q 009321 184 -----RVAVD--------SRKRNPADFALWKAA----------------------------------------------- 203 (537)
Q Consensus 184 -----~~~~~--------~~k~~~~df~lwk~~----------------------------------------------- 203 (537)
.|+.+ ..-+++.||.+++..
T Consensus 301 i~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~ 380 (995)
T PTZ00419 301 IADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKV 380 (995)
T ss_pred EeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeE
Confidence 00000 001122333322110
Q ss_pred ---------------------------------------cCC-----------------------CCccccCCCCCCCch
Q 009321 204 ---------------------------------------KAG-----------------------EPSWDSPWGPGRPGW 221 (537)
Q Consensus 204 ---------------------------------------~~g-----------------------~~~w~~~wG~g~PgW 221 (537)
+.+ .+++...||.+.|.|
T Consensus 381 ~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~ 460 (995)
T PTZ00419 381 PNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAY 460 (995)
T ss_pred EeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEE
Confidence 000 012234699999998
Q ss_pred hhh-HH--------------------------------------------------HHH-HhhcC-----------CCee
Q 009321 222 HIE-CS--------------------------------------------------AMS-AHYLS-----------SKFD 238 (537)
Q Consensus 222 ~ie-cs--------------------------------------------------~~~-~~~~g-----------~~~d 238 (537)
+.+ |. ... ...+| .|.|
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d 540 (995)
T PTZ00419 461 RVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTS 540 (995)
T ss_pred EeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCc
Confidence 642 10 000 00123 2679
Q ss_pred EEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHH------------------
Q 009321 239 IHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE------------------ 298 (537)
Q Consensus 239 ih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~------------------ 298 (537)
++..|+|++|++....++++.++.++ ||.++ ++||+|.. +|+|||||+||+|+|.++++
T Consensus 541 ~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v-~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~ 619 (995)
T PTZ00419 541 LLETGSDILFFWVARMVMMSLHLTDKLPFKTV-FLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPE 619 (995)
T ss_pred EEEechhHHhHHHHHHHHHHHHhcCCCChHHH-hccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccch
Confidence 99999999886555555555555555 45677 45699998 99999999999999999999
Q ss_pred -------------------HcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------
Q 009321 299 -------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------ 352 (537)
Q Consensus 299 -------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~------ 352 (537)
+||+|++|||+++. +..+|++|+.+.+....+.+.+|+|+++++...+......
T Consensus 620 ~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~ 699 (995)
T PTZ00419 620 KEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLF 699 (995)
T ss_pred hhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 79999999999986 7889999999999988888888999888776554432110
Q ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhcccCc-hhhhHHHHHHHHHH
Q 009321 353 -----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQP-KQQQLSLIESLRKI 424 (537)
Q Consensus 353 -----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~-~~~~~~~~~~l~~~ 424 (537)
......|+|+++.++.+...+.++| ++|+++.|+.. +++|+ ..+|.|++..++|.. ......+......+
T Consensus 700 ~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L 777 (995)
T PTZ00419 700 KPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVL 777 (995)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHH
Confidence 0012347899999999999999999 89999999999 99974 668999998888741 11111223344456
Q ss_pred HHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 425 ENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 425 ~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
..+|+.++.+|. |+|. .++++|+.+.
T Consensus 778 ~~vL~~~l~LL~PfmPf-itEElw~~L~ 804 (995)
T PTZ00419 778 HTVLDIGLRLLHPMMPF-ITEELYQRLP 804 (995)
T ss_pred HHHHHHHHHHHhhhhhh-hHHHHHHhhh
Confidence 677788888886 8888 7999999885
No 47
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-36 Score=324.86 Aligned_cols=362 Identities=17% Similarity=0.115 Sum_probs=275.0
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHH-------HH-----------
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-------ND----------- 97 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a-------~~----------- 97 (537)
.+.+|.+-.++|+|.||+||||+|++|+||+|+|+|++.||+|.-.+.+.|+|..|-.-+ .+
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 356999999999999999999999999999999999999999999999999986432111 00
Q ss_pred ---------------cCCC--------------------hHHHHHHHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHH
Q 009321 98 ---------------LGEN--------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKD 140 (537)
Q Consensus 98 ---------------~g~~--------------------~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s--~~~~~~~~ 140 (537)
.+.+ |+.+++.....|.++|.+|||. .|.+...+ .+-..+.+
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~-fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVK-FDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcc-cceeeccchhhhcccHHH
Confidence 0110 1237788888999999999998 56664333 34456889
Q ss_pred HHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCc
Q 009321 141 MITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPG 220 (537)
Q Consensus 141 ~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~Pg 220 (537)
+++.|.++|++|+.+|..+.+..++..+|.. .|.++-|+ +|...+-++
T Consensus 274 vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~-----------------------~~~vl~KS--DGt~lY~t~------- 321 (577)
T COG0018 274 VVEDLEEKGLLYEDDGALVVDLLKFKKFGDD-----------------------KDRVLQKS--DGTYLYFTR------- 321 (577)
T ss_pred HHHHHHhcCCEeeeCCeEEEehhhhhhcCCC-----------------------CCeEEEEc--CCCeeeehh-------
Confidence 9999999999999888888776544333321 23333332 222111110
Q ss_pred hhhhHHHHHHhh-cCCCeeEEEecccCcCcchhHHHHHHhh----ccCCCCceEEEEeeeeee---CCccccccCCCccc
Q 009321 221 WHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSCA----ACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFT 292 (537)
Q Consensus 221 W~iecs~~~~~~-~g~~~dih~~G~Dl~fpH~~~~~a~~~a----~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~ 292 (537)
-| ++...++ .|....|.+.|.| || ..+.|..+ ++..+.....+|.++-++ +|.||||+.|++|+
T Consensus 322 -DI--Ay~~~K~~~~~d~~IyV~gad----q~-~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vt 393 (577)
T COG0018 322 -DI--AYHLYKFERGFDKLIYVLGAD----QH-GHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVT 393 (577)
T ss_pred -HH--HHHHHHHhcCCCEEEEEeCCc----ch-hHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEE
Confidence 12 2222333 5667889999999 77 44666554 233332245578777666 57799999999999
Q ss_pred HHHHHHHcC----------------------chhhHHHHhhcCcCCCcccCHHHHHHHHH-HHHHHHHHHHHHHHhcCcc
Q 009321 293 IRQITERYH----------------------PLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPF 349 (537)
Q Consensus 293 ~~dll~~~~----------------------~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~~~~~~~l~~~ 349 (537)
++|++++.+ .+++||++++.+..++++|+|+.+.+..+ +..|+||+++|++++++++
T Consensus 394 l~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka 473 (577)
T COG0018 394 LDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKA 473 (577)
T ss_pred HHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhc
Confidence 999999888 99999999999999999999999988764 7889999999999999887
Q ss_pred ccCC----------CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchh--hhHHH
Q 009321 350 QEHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ--QQLSL 417 (537)
Q Consensus 350 ~~~~----------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~--~~~~~ 417 (537)
.... ...+.+.+|+..+.+++..+.++. +++ .|+.|+.||++|+..||+||+.+++..... ...+|
T Consensus 474 ~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~-~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aR 551 (577)
T COG0018 474 GEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EEL-EPHRLANYLYDLAGSFNSFYNACPVLGAENEELRAAR 551 (577)
T ss_pred cccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-Hhc-CchHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHH
Confidence 5211 111235778899999999999997 666 599999999999999999999999876532 35689
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC
Q 009321 418 IESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 418 ~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
+.++.++..+|+++|.+|||.++
T Consensus 552 L~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 552 LALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999753
No 48
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1.2e-36 Score=332.66 Aligned_cols=369 Identities=15% Similarity=0.107 Sum_probs=271.7
Q ss_pred CCCccccccCC--CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHH---HH---
Q 009321 26 TQQKELFTPIV--RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA---ND--- 97 (537)
Q Consensus 26 ~~~~~~~~p~~--~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a---~~--- 97 (537)
.+..+.|-+.. +.+|.++.|+|||+|++||||+|+++++|+|+|+|++.||+|.-.+.+.|+|..+-.-+ .+
T Consensus 98 ~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~ 177 (566)
T TIGR00456 98 LTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGN 177 (566)
T ss_pred HhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCC
Confidence 33444554322 34899999999999999999999999999999999999999999999999886432111 00
Q ss_pred -------------------------------------------cCCC-----hHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 009321 98 -------------------------------------------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQP 129 (537)
Q Consensus 98 -------------------------------------------~g~~-----~~~~~~~~~~~~~~~l~~L~i~~~~~~~ 129 (537)
.|.+ |+.+++...+.|.++|++|||.+ |.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~ 256 (566)
T TIGR00456 178 EKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHF-DSFV 256 (566)
T ss_pred ccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeee
Confidence 0111 35677888899999999999984 6554
Q ss_pred --chhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCC
Q 009321 130 --RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGE 207 (537)
Q Consensus 130 --r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~ 207 (537)
..+.+...+.++++.|.++|++|+. |.+|++... +|. ++.|.++-|+ +|.
T Consensus 257 ~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~---~~d----------------------~~~~~vl~ks--DGt 308 (566)
T TIGR00456 257 WEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL---FGD----------------------KDKDRVLQKS--DGT 308 (566)
T ss_pred ccccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc---ccC----------------------CCCCeEEEEC--CCC
Confidence 3334555678999999999999977 888876532 221 0013334332 332
Q ss_pred CccccCCCCCCCchhhhHHHHHHhhc-CCCeeEEEecccCcCcchhHHHH---HHhhccCCCCceEEEEeeeeeeCCccc
Q 009321 208 PSWDSPWGPGRPGWHIECSAMSAHYL-SSKFDIHGGGIDLIFPHHENEIA---QSCAACQDSNVSYWMHNGHVTNNNEKM 283 (537)
Q Consensus 208 ~~w~~~wG~g~PgW~iecs~~~~~~~-g~~~dih~~G~Dl~fpH~~~~~a---~~~a~~~~~~~~~~~h~g~v~~~G~KM 283 (537)
+++.+. ..++...++- +....|.+.|.| |+.+... .+++++..++.++ .|++|.+++|.||
T Consensus 309 ~~Y~t~----------DiA~~~~k~~~~~d~iI~V~g~~----q~~h~~~v~~~l~~lG~~~~~~l-~h~~~~~V~~~km 373 (566)
T TIGR00456 309 YLYLTR----------DIAYHLDKLERGFDKMIYVWGSD----HHLHIAQFFAILEKLGFYKKKEL-IHLNFGMVPLGSM 373 (566)
T ss_pred ceechh----------hHHHHHHHHhcCCCEEEEEecCc----HHHHHHHHHHHHHHcCCCCCCce-EEEEEEEEECCCC
Confidence 222210 1122222221 456778888889 7744332 2334443444455 8889999999999
Q ss_pred cccCCCcccHH-----------------------HHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHH-HHHHHHHHHH
Q 009321 284 SKSLGNFFTIR-----------------------QITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS-DAVFYIYQTL 339 (537)
Q Consensus 284 SKS~Gn~i~~~-----------------------dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~-~~l~~l~~~~ 339 (537)
|||+||+|++. ++++.++.|++||++|+....++++|+++.+.+.. +...+++|++
T Consensus 374 Skr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~ 453 (566)
T TIGR00456 374 KTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAH 453 (566)
T ss_pred CccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHH
Confidence 99999999998 66667889999999999988999999999887764 3466899999
Q ss_pred HHHHHhcCccccCCC---------CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCc
Q 009321 340 QDCEVALSPFQEHGK---------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (537)
Q Consensus 340 ~~~~~~l~~~~~~~~---------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~ 410 (537)
+|++++++++..... .++.+..|+..+..+++.+.++| ++++++.++.. ++++++.+|+||+.+++...
T Consensus 454 aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~-l~~La~~~N~yy~~~~Vl~~ 531 (566)
T TIGR00456 454 ARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNY-LYELASLFSSFYKACPVLDA 531 (566)
T ss_pred HHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHHHhcCccCCC
Confidence 999999887642110 02234567888999999999999 89998888877 99999999999999877653
Q ss_pred h--hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 411 K--QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 411 ~--~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
. ....+|+.++.++..+|.++|.+|||.++
T Consensus 532 ~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 532 ENENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 2 23468999999999999999999999764
No 49
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-36 Score=346.78 Aligned_cols=198 Identities=19% Similarity=0.203 Sum_probs=164.4
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-C
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-H 313 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 313 (537)
|.|+|++|+|++++|+.+++.++.++.+. ++++.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++. +
T Consensus 530 P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~ 609 (897)
T PRK12300 530 PVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAE 609 (897)
T ss_pred CceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCC
Confidence 67999999999999999998888887764 665666889999999999999999999999999999999999999985 9
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHH-H
Q 009321 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-Q 392 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L-~ 392 (537)
+.+|++|+++.+.++.+.+.++++++..+...... ......|+++++.++++.+.+.++| ++|+++.|+.. + +
T Consensus 610 ~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~----~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~-i~~ 683 (897)
T PRK12300 610 LLQDADWREKEVESVRRQLERFYELAKELIEIGGE----EELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQE-AFY 683 (897)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCc----cccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHH
Confidence 99999999999999999999888887665432211 1123467899999999999999999 89999999987 6 4
Q ss_pred HHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 393 ~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+...+|.|++..++ .....+...|+.++.+|. |+|. .++++|+.++
T Consensus 684 ~l~~~~n~Yi~~~k~-----------~~~~~l~~~l~~~~~lLaPf~P~-~aEeiw~~L~ 731 (897)
T PRK12300 684 ELLNDLRWYLRRVGE-----------ANNKVLREVLEIWIRLLAPFTPH-LAEELWHKLG 731 (897)
T ss_pred HHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcC
Confidence 777889999876552 122345566677777775 7887 7899998875
No 50
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=4e-36 Score=341.19 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=114.0
Q ss_pred CcceEEEe--CCCCCCC-CCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009321 38 GKVGMYVC--GVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~-lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~ 114 (537)
++.++|+. .|.|+|. +||||+++++++|+++||.|++||+|.|++|+|.||.+|...|.+.|..|.+++.++++.|.
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~ 187 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR 187 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence 45556653 4666696 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC
Q 009321 115 VDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (537)
Q Consensus 115 ~~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~ 164 (537)
+.|++||+..+ +.+.+|+ +|...++.+|.+|.++|++|++...|+||+.+
T Consensus 188 ~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~ 240 (963)
T PLN02563 188 SQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 240 (963)
T ss_pred HHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCc
Confidence 99999999842 2455555 79999999999999999999999999999874
No 51
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.8e-35 Score=318.38 Aligned_cols=358 Identities=14% Similarity=0.074 Sum_probs=269.2
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHH---HHHHc---------------
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR---RANDL--------------- 98 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~---~a~~~--------------- 98 (537)
+++|.+-.++|+|.|++||||+|++++||+|+|+|++.||+|.-.+.+.|+|..|-. ...+.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 568999999999999999999999999999999999999999999999999864321 11111
Q ss_pred -----------------------------CCC-----hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHH
Q 009321 99 -----------------------------GEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQ 144 (537)
Q Consensus 99 -----------------------------g~~-----~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~ 144 (537)
|.+ |+.+++...+.|.++|++|||.+ |.+...|.|.+.+.++++.
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~~v~~~ 270 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLMEDFIGI 270 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHHHHHHH
Confidence 110 45667778888999999999995 6666667777888999999
Q ss_pred HHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhh
Q 009321 145 IINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 224 (537)
Q Consensus 145 L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~ie 224 (537)
|.++|++|+.+|..|++... +|. + |.++-|+ +|.+++.+. -|
T Consensus 271 L~~~g~~~e~dGa~~~~~~~---~g~-----------------------~-~~vl~ks--DGt~~Y~t~--------Di- 312 (562)
T PRK12451 271 LEEHDLLEESEGALVVNLEE---EGM-----------------------P-PCLIRKS--DGATIYATR--------DL- 312 (562)
T ss_pred HHHCCCEEecCCeEEEEecc---cCC-----------------------C-ceEEEeC--CCccccchh--------HH-
Confidence 99999999999998876532 221 0 2233332 222222110 12
Q ss_pred HHHHHHhh--cCCCeeEEEecccCcCcchhHHHHH---HhhccCCCCceE-EEEeeeeeeCCccccccCCCcccHHHHHH
Q 009321 225 CSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSY-WMHNGHVTNNNEKMSKSLGNFFTIRQITE 298 (537)
Q Consensus 225 cs~~~~~~--~g~~~dih~~G~Dl~fpH~~~~~a~---~~a~~~~~~~~~-~~h~g~v~~~G~KMSKS~Gn~i~~~dll~ 298 (537)
++...++ +|....|.+.|.| |+.+.... +.+++..+..++ .+..|+|..+|+||||++|++|+++||++
T Consensus 313 -A~~~~k~~~~~~d~~IyV~g~d----q~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLld 387 (562)
T PRK12451 313 -TAALYRQNTFGFDKALYVVGPE----QSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLE 387 (562)
T ss_pred -HHHHHHhhccCCCEEEEEeCCc----HHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHH
Confidence 2222233 5667789999999 66443322 233332222222 13346677799999999999999999999
Q ss_pred H-------------------------cCchhhHHHHhhcCcCCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCccccC
Q 009321 299 R-------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPFQEH 352 (537)
Q Consensus 299 ~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~-~~l~~l~~~~~~~~~~l~~~~~~ 352 (537)
+ .+.+++||++|+.+..++++|+++.+.+.. ++--++||+++|++++++++...
T Consensus 388 ea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~ 467 (562)
T PRK12451 388 EAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVE 467 (562)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 6 678999999999999999999999987766 33449999999999999886421
Q ss_pred CC------CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHH
Q 009321 353 GK------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIEN 426 (537)
Q Consensus 353 ~~------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (537)
.. .++.+..++..+..+++.+.++| ++++++.++.. ++++++.+|+||+.+++.........|+.++.++..
T Consensus 468 ~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~y-l~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~ 545 (562)
T PRK12451 468 FETCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKY-VLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTV 545 (562)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 12345678888999999999999 89997777766 999999999999988877433345689999999999
Q ss_pred HHHHHHhhcccCCC
Q 009321 427 EVKEVLRILGLLPP 440 (537)
Q Consensus 427 ~l~~~l~vLGi~~~ 440 (537)
+|.++|.+|||.++
T Consensus 546 vL~~gL~LLGI~~~ 559 (562)
T PRK12451 546 VLKEGLRLLGVEAP 559 (562)
T ss_pred HHHHHHHhcCCCcc
Confidence 99999999999764
No 52
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-36 Score=296.28 Aligned_cols=415 Identities=15% Similarity=0.135 Sum_probs=303.6
Q ss_pred cccccCCCCcceEEEeCCCCC--CCCCcch-hhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHH
Q 009321 30 ELFTPIVRGKVGMYVCGVTAY--DLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106 (537)
Q Consensus 30 ~~~~p~~~~~v~~y~~gPt~y--g~lHiGh-~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~ 106 (537)
.+.-| .+++..+.++...|| ..+|+|| +.+.+.||+++||.+.+|++..|++|+|++|.++..+|.++|.+|++++
T Consensus 5 ~~ilp-~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elc 83 (567)
T KOG1247|consen 5 DPILP-APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELC 83 (567)
T ss_pred CCccc-CCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHH
Confidence 34445 357788888887777 9999999 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCC---
Q 009321 107 NRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYG--- 169 (537)
Q Consensus 107 ~~~~~~~~~~l~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg--- 169 (537)
++|+..+...+++++|+ .|.+.|+| .+.+..+.+|.+|.++|+.-+..-.+.||..+ ||.||
T Consensus 84 dKyh~ihk~vy~Wf~Id-fD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ 162 (567)
T KOG1247|consen 84 DKYHGIHKVVYDWFKID-FDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDD 162 (567)
T ss_pred HhcchhHHHHHHhhccc-ccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcc
Confidence 99999999999999999 58888887 67788999999999999988888888888764 66554
Q ss_pred ----------CCcc-hhchhhh-----cCCCc--------cccc--------cccCcccccccccc-------------c
Q 009321 170 ----------RLSG-QRLENNR-----AGERV--------AVDS--------RKRNPADFALWKAA-------------K 204 (537)
Q Consensus 170 ----------~ls~-~~l~~~~-----~g~~~--------~~~~--------~k~~~~df~lwk~~-------------~ 204 (537)
++-+ ..+...+ .+-.+ +++. .++.. ---.|... +
T Consensus 163 ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~-~~~~WS~Na~~it~sWlk~gl~ 241 (567)
T KOG1247|consen 163 ARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTL-VEGDWSQNAQNITRSWLKDGLK 241 (567)
T ss_pred ccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhcc-ccCCCccchHHHHHHHHHcccc
Confidence 2211 1111110 01000 0000 00000 00013211 2
Q ss_pred CCCCccccCCCCCCC----------chhhhH----------HHHHHhhcCCCe---eEEEecccCcCcchhHHHHHHhhc
Q 009321 205 AGEPSWDSPWGPGRP----------GWHIEC----------SAMSAHYLSSKF---DIHGGGIDLIFPHHENEIAQSCAA 261 (537)
Q Consensus 205 ~g~~~w~~~wG~g~P----------gW~iec----------s~~~~~~~g~~~---dih~~G~Dl~fpH~~~~~a~~~a~ 261 (537)
+..++++..||.++| .|+.+- +.-..++|..+- -+++.|+|++.||.+.+|+...+.
T Consensus 242 pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt 321 (567)
T KOG1247|consen 242 PRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGT 321 (567)
T ss_pred ccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcC
Confidence 345788999999999 387542 111234455443 478999999999999999988776
Q ss_pred cCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHH-HcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHH
Q 009321 262 CQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIY 336 (537)
Q Consensus 262 ~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~ 336 (537)
..+ +..+.....++++.+..|+|||+|..|.-.++.+ +.++++.|||+|+. |..+|..|||+.+....|+ +.+|-
T Consensus 322 ~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLG 401 (567)
T KOG1247|consen 322 EENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLG 401 (567)
T ss_pred CCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHH
Confidence 543 4455556678899999999999999988877766 58999999999997 8899999999999987764 55666
Q ss_pred HHHHHHHHhcCccccCCC----CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchh
Q 009321 337 QTLQDCEVALSPFQEHGK----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 412 (537)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~ 412 (537)
++++|+.++......+.. ....+..+++.++++.....++| +......|+.. ++++.+..|.|++.++.++...
T Consensus 402 NFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~-~m~is~~GNqylQ~~~~~k~~~ 479 (567)
T KOG1247|consen 402 NFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKT-AMEISRRGNQYLQENTDNKLYE 479 (567)
T ss_pred HHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhhHHHhcccccchhh
Confidence 666666665543222111 12336788999999999999999 88999999999 9999999999999988665433
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hhc-ccCCCCChHHHHHHH
Q 009321 413 QQLSLIESLRKIENEVKEVL-RIL-GLLPPGAYSEVLQQL 450 (537)
Q Consensus 413 ~~~~~~~~l~~~~~~l~~~l-~vL-Gi~~~~~~~~~~~~~ 450 (537)
.++.+...+..+...+..++ .+| .++|. .+.+|..|+
T Consensus 480 ~~r~r~~~vi~~a~nii~lvs~ll~P~mP~-~s~~I~kql 518 (567)
T KOG1247|consen 480 ESRQRAGTVIGLAANIIYLVSVLLYPYMPT-TSAEILKQL 518 (567)
T ss_pred hcccccceeeehhhHHHHHHHHHhcccccc-chHHHHHHh
Confidence 33334433333333333333 334 57887 666776665
No 53
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=9.3e-35 Score=335.57 Aligned_cols=211 Identities=15% Similarity=0.202 Sum_probs=165.4
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc-
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~- 312 (537)
|.|+..-|.|+++.|.-..+..+.+++++ ||.++ +.|||++. +|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~V-lvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~ 751 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNL-ICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSV 751 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCccee-EEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcC
Confidence 67899999999999998888888888886 56777 55699998 9999999999999999999999999999999986
Q ss_pred C-cCCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCcccc-------------CCCCCCCChHHHHHHHHHHHHHHHHH
Q 009321 313 H-YRSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPFQE-------------HGKTARINPAAEDCINKLRDEFHARM 377 (537)
Q Consensus 313 ~-~~~~~~fs~~~l~~~~-~~l~~l~~~~~~~~~~l~~~~~-------------~~~~~~~~~~l~~~l~~~~~~v~~am 377 (537)
. ..++++|+++.+.+.. +.+..++++++.+...+..+.. .......|+|+++.++++.+.+.++|
T Consensus 752 ~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~m 831 (1205)
T PTZ00427 752 AVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEM 831 (1205)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3689999999997654 4577788877666554332110 01123458999999999999999999
Q ss_pred HcccCchhhhHHHHHHHHH-HHHHHHhhhcc--cCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 378 SDDLNTSHILTGAFQDALK-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 378 ~dd~n~~~al~~~L~~l~~-~~N~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
++|++..|+.. |++|+. ..|.|++..+. |.... .......+..+..+|+.++.+|. |+|. .++++|+.+.
T Consensus 832 -e~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~Pf-iaEeiyq~L~ 905 (1205)
T PTZ00427 832 -KAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPF-ITEYIYQQLR 905 (1205)
T ss_pred -HccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHhh
Confidence 99999999999 999997 45788875442 32111 12233445667778888888886 8888 7899999884
No 54
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-34 Score=314.31 Aligned_cols=402 Identities=17% Similarity=0.223 Sum_probs=282.1
Q ss_pred ccccccCCC-Cc-ceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHH
Q 009321 29 KELFTPIVR-GK-VGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLS 104 (537)
Q Consensus 29 ~~~~~p~~~-~~-v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~ 104 (537)
...|.+..+ ++ -++|++-|-|| |.+|+||+|+|+++|+++||.|++||+|.|.+|+|-.|.+++..|.+.|.+|..
T Consensus 21 ~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~ 100 (814)
T COG0495 21 AKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAK 100 (814)
T ss_pred cCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHH
Confidence 456665333 33 48999988888 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCC--ccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC-------------CCC
Q 009321 105 LSNRYCQEYLVDMADLQCLPPTY--QPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPN 167 (537)
Q Consensus 105 ~~~~~~~~~~~~l~~L~i~~~~~--~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-------------~~~ 167 (537)
+++.+++.+++.|+.||.+. |. ...|+ +|...++.+|.+|.++|++|.++..|-||+.+ |-+
T Consensus 101 wt~~ni~~~k~qlk~lG~si-DW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r 179 (814)
T COG0495 101 WTYYNIAYMKKQLKSLGFSI-DWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWR 179 (814)
T ss_pred HHHHHHHHHHHHHHHhCCcc-ccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCccc
Confidence 99999999999999999984 42 22223 79999999999999999999999999999884 222
Q ss_pred CCC-------------Ccc---h---hchhhh---------------------------cCC------------------
Q 009321 168 YGR-------------LSG---Q---RLENNR---------------------------AGE------------------ 183 (537)
Q Consensus 168 yg~-------------ls~---~---~l~~~~---------------------------~g~------------------ 183 (537)
||. ++. . +++.+. .|.
T Consensus 180 ~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~g 259 (814)
T COG0495 180 CGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFG 259 (814)
T ss_pred CCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccC
Confidence 331 000 0 000000 000
Q ss_pred -----------------------------------Ccc-------------ccccccCc---------------------
Q 009321 184 -----------------------------------RVA-------------VDSRKRNP--------------------- 194 (537)
Q Consensus 184 -----------------------------------~~~-------------~~~~k~~~--------------------- 194 (537)
.+. ...+-.||
T Consensus 260 vt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtg 339 (814)
T COG0495 260 VTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTG 339 (814)
T ss_pred eEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCccccccccc
Confidence 000 00000000
Q ss_pred ----------ccccccccc---------cC-----------------------------------------C-------C
Q 009321 195 ----------ADFALWKAA---------KA-----------------------------------------G-------E 207 (537)
Q Consensus 195 ----------~df~lwk~~---------~~-----------------------------------------g-------~ 207 (537)
+||...+.- .. | .
T Consensus 340 avm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~l 419 (814)
T COG0495 340 AVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRL 419 (814)
T ss_pred ceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEeccc
Confidence 111100000 00 0 0
Q ss_pred Ccc----ccCCCCCCC--------------------------------------chh-hhHHH---------HH-----H
Q 009321 208 PSW----DSPWGPGRP--------------------------------------GWH-IECSA---------MS-----A 230 (537)
Q Consensus 208 ~~w----~~~wG~g~P--------------------------------------gW~-iecs~---------~~-----~ 230 (537)
..| ..-||.+.| .|- ..|+. |. +
T Consensus 420 rdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ss 499 (814)
T COG0495 420 RDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSS 499 (814)
T ss_pred chHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcccc
Confidence 112 012444443 142 22421 10 0
Q ss_pred ----hh-----cC------------CCeeEEEecccCcCcchhHHHHHHhhccC-------CCCceEEEEeeeeee-CCc
Q 009321 231 ----HY-----LS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN-NNE 281 (537)
Q Consensus 231 ----~~-----~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~-------~~~~~~~~h~g~v~~-~G~ 281 (537)
+| .| .|+|++.||+||+.-|..+.+.-+.+++. +|+.++ +.+|||+. +|+
T Consensus 500 wy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~~g~ 578 (814)
T COG0495 500 WYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGEEGE 578 (814)
T ss_pred cccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEecCCC
Confidence 11 11 28999999999999999999988888852 456666 78999999 899
Q ss_pred cccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCC-
Q 009321 282 KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARIN- 359 (537)
Q Consensus 282 KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~- 359 (537)
|||||+||+|+|++++++||+|++|+|++.. +..++++|+++.+..+.+.|.++++.+.+........ ....+
T Consensus 579 KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~~~~ 653 (814)
T COG0495 579 KMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTKEQG 653 (814)
T ss_pred ccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccchhh
Confidence 9999999999999999999999999999997 9999999999999999999999998877655432110 01111
Q ss_pred hHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cC
Q 009321 360 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LL 438 (537)
Q Consensus 360 ~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~ 438 (537)
..+...++++...+.+.+...+.+..|++. +|+|++.+.+|...... . . ..+...+..+..+|- |.
T Consensus 654 ~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~-~m~l~N~l~~~~~~~~~------~---~---~~l~~~l~~~v~lLaP~a 720 (814)
T COG0495 654 KEDRWLLHRTIKKVTEDFEARQTFNTAIAA-LMELLNALRKYLRRTEG------D---R---KVLREALETWVRLLAPFA 720 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc------h---H---HHHHHHHHHHHHHhcccc
Confidence 334455666777777777332778889999 99999999888765431 0 1 223345566666664 77
Q ss_pred CCCChHHHHHHHH
Q 009321 439 PPGAYSEVLQQLK 451 (537)
Q Consensus 439 ~~~~~~~~~~~~~ 451 (537)
|. .++++|..++
T Consensus 721 PH-~aEElW~~lg 732 (814)
T COG0495 721 PH-IAEELWEELG 732 (814)
T ss_pred cH-HHHHHHHHhc
Confidence 77 7889998875
No 55
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=2.1e-33 Score=306.37 Aligned_cols=354 Identities=12% Similarity=0.051 Sum_probs=261.3
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHH---HH-cC-------C-----
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA---ND-LG-------E----- 100 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a---~~-~g-------~----- 100 (537)
+++|.+-.++|+|.|++||||+|++++||+|+|+|++.||+|.-.+.+.|+|..|-.-+ .+ .+ .
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 46899999999999999999999999999999999999999999999999987542211 11 00 0
Q ss_pred -------------------------------------ChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHH
Q 009321 101 -------------------------------------NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMIT 143 (537)
Q Consensus 101 -------------------------------------~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~ 143 (537)
-|+.+++.....|.+.+.+|||.+ |.. ..|.|.+.+.++++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~f-d~~-ges~y~~~~~~vi~ 273 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVEL-EEK-GESFYNPYIPGVIE 273 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee-eec-CchhhhhhHHHHHH
Confidence 023556666778899999999985 543 45667777899999
Q ss_pred HHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhh
Q 009321 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (537)
Q Consensus 144 ~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~i 223 (537)
.|.++|++|+.+|..|++... +| .+.++-|+ +| .+.|..
T Consensus 274 ~L~~~g~~~e~dGa~~v~l~~---~~-------------------------~~~vl~ks--DG-----------t~tY~t 312 (576)
T PLN02286 274 ELESKGLVVESDGARVIFVEG---FD-------------------------IPLIVVKS--DG-----------GFNYAS 312 (576)
T ss_pred HHHHCCCEEeeCCceEeeccC---CC-------------------------CceEEEEC--CC-----------chhhHH
Confidence 999999999999988875321 11 01122222 22 222210
Q ss_pred -hHHHHHHhh--cCCCeeEEEecccCcCcchhHHH---HHHhhccCCCC---ceE-EEEeeeee-eCCccccccCCCccc
Q 009321 224 -ECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSN---VSY-WMHNGHVT-NNNEKMSKSLGNFFT 292 (537)
Q Consensus 224 -ecs~~~~~~--~g~~~dih~~G~Dl~fpH~~~~~---a~~~a~~~~~~---~~~-~~h~g~v~-~~G~KMSKS~Gn~i~ 292 (537)
..++...++ ++....|.+.|.| |+.... +.+.+++..+. .++ .+..|+|+ .+|+||||++||+|+
T Consensus 313 ~DIA~~~~k~~~~~~d~~IyVvg~~----q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~ 388 (576)
T PLN02286 313 TDLAALWYRLNEEKAEWIIYVTDVG----QQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVR 388 (576)
T ss_pred HHHHHHHHHHhccCCCEEEEEEeCc----HHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeE
Confidence 122222222 4556778888889 664432 22333442211 122 24457786 488899999999999
Q ss_pred HHHHHHH-----------------------------cCchhhHHHHhhcCcCCCcccCHHHHHHHHH-HHHHHHHHHHHH
Q 009321 293 IRQITER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDC 342 (537)
Q Consensus 293 ~~dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~~~~ 342 (537)
++|++++ ++.+++||++|+.+..++++|+++.+.+... +--|+||+++|+
T Consensus 389 L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~ 468 (576)
T PLN02286 389 LVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARI 468 (576)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHH
Confidence 9999994 4579999999999999999999999877653 334899999999
Q ss_pred HHhcCccccCC----------CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchh
Q 009321 343 EVALSPFQEHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 412 (537)
Q Consensus 343 ~~~l~~~~~~~----------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~ 412 (537)
++++++..... ..++.+..|+..+..+++.+..+. +++. |+.|+.||++|++.+|+||+.+++.....
T Consensus 469 ~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~ 546 (576)
T PLN02286 469 CSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLL-PNRLCEYLYNLSEKFTKFYSNCKVNGSEE 546 (576)
T ss_pred HHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcC-chHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 99998764210 012345678889999999999997 7775 99999999999999999999887765322
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 413 QQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 413 ~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
. .+|+.++.++..+|.+++.+|||.++
T Consensus 547 ~-~aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 547 E-TSRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred h-hHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 2 67999999999999999999999764
No 56
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-34 Score=318.26 Aligned_cols=211 Identities=19% Similarity=0.231 Sum_probs=168.3
Q ss_pred eEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcC
Q 009321 238 DIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315 (537)
Q Consensus 238 dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~ 315 (537)
|+..-|.|+..-+.---...+.|+.+. |+.++ +.|||++. +|+|||||+||+|+|.|++++||+|+||+|++++.|.
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~v-ltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~ 635 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNV-LTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYW 635 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHH-hhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCch
Confidence 777888885443332233444566676 55666 55699998 8999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC------CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHH
Q 009321 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 389 (537)
Q Consensus 316 ~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~ 389 (537)
.++.||++.+++....+..|+|+++.+..++....... .....|++++.+++.+...+.++| ++|+++.++..
T Consensus 636 ~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eay-e~y~f~~v~~~ 714 (933)
T COG0060 636 EDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAY-ENYDFHKVVRA 714 (933)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999999999999999999999988887654321 123568999999999999999999 99999999999
Q ss_pred HHHHHH-HHHH-HHHhhhc--ccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHH
Q 009321 390 AFQDAL-KFIN-SSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 390 ~L~~l~-~~~N-~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
|++|+ ..++ .|++..+ .|...+++..|.+....+..+|..+..+|. |+|. +++++|+.+..
T Consensus 715 -l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPf-taEeiw~~l~~ 780 (933)
T COG0060 715 -LMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPF-TAEEIWQNLPG 780 (933)
T ss_pred -HHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhCcc
Confidence 99999 6664 4555443 454334455666666677777888888886 7888 89999998743
No 57
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=1.9e-32 Score=279.30 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=182.0
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhh------------------HHHHHHHHHcCCC
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD------------------DKIIRRANDLGEN 101 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d------------------~ki~~~a~~~g~~ 101 (537)
.-++.||++|+|.+||||+|+++.+|+++|+||++|++|.||+++||+| .++...+...|..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 4567789999999999999999999999999999999999999999995 4445555556665
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhH--HHHHHHHHHHHHCCceeee--------ccceeecC-CCCCCCCC
Q 009321 102 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYVV--------EGDVFFAV-EKSPNYGR 170 (537)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~--~~~~~~~~~L~~kG~ay~~--------~~~v~f~~-~~~~~yg~ 170 (537)
+ +++++|.+.|.+.|+.|||+ ++.+.++..+. .....+...|.+++.+... ..+.|+.. .-|++||+
T Consensus 100 ~-~~~d~~~~~f~~~l~~lgi~-~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~ 177 (353)
T cd00674 100 E-SYAEHFERPFEESLEKLGIE-VEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGK 177 (353)
T ss_pred H-HHHHHHHHHHHHHHHHcCCe-eeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCc
Confidence 6 99999999999999999998 56444333222 3455666677777765431 12334432 35899998
Q ss_pred Ccchhchhhhc-CCCccccccccCcccccccccccCCCCccccC-CCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcC
Q 009321 171 LSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSP-WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 248 (537)
Q Consensus 171 ls~~~l~~~~~-g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~-wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~f 248 (537)
+.. .+.+... ..+|...+..-+. .+.+. -|.|...|.++++ |.+.++ .+|+.++|+||.-
T Consensus 178 ~~~-~v~~~d~~~~~v~y~c~cG~~--------------g~~~~~~g~~KL~Wr~dW~-~rW~~l--~Vd~E~~GkDh~~ 239 (353)
T cd00674 178 DTT-TVEAYDAKAGTVTYKCECGHE--------------ETVDIRTGRGKLTWRVDWP-MRWAIL--GVDFEPFGKDHAS 239 (353)
T ss_pred cee-EEEEEeCCCCeEEEEcCCCCE--------------EEEeecCCCcccCCCCCch-hhhhhc--CCCEEeeCccccc
Confidence 752 2222211 1223222211111 01000 1222223333322 122345 4899999999654
Q ss_pred c---chhHHHHHHh-hccCCCCceEEEEeeeeeeCCc-cccccCCCcccHHHHHHHcCchhhHHHHhhcC-cCCCcccCH
Q 009321 249 P---HHENEIAQSC-AACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAH-YRSPLNYSV 322 (537)
Q Consensus 249 p---H~~~~~a~~~-a~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~-~~~~~~fs~ 322 (537)
+ +-. ..+.+. ++++.+|. . +.+||++++|. |||||+||+|++.|+++.+++|++|||+++.+ ..++++|++
T Consensus 240 ~ggs~~~-~~~i~~~ilg~~~P~-~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~ 316 (353)
T cd00674 240 AGGSYDT-GKEIAREIFGGEPPV-P-VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDL 316 (353)
T ss_pred cccHHHH-HHHHHHHHhCCCCCe-E-EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcCh
Confidence 4 221 122333 55555543 3 55699999776 99999999999999999999999999999986 888999998
Q ss_pred HHHHHHHHHHHHHHH
Q 009321 323 LQLDSASDAVFYIYQ 337 (537)
Q Consensus 323 ~~l~~~~~~l~~l~~ 337 (537)
+ +......+.++.+
T Consensus 317 ~-~~~~~dey~r~~~ 330 (353)
T cd00674 317 D-ILRLYDEYDRLER 330 (353)
T ss_pred h-HHHHHHHHHHHHH
Confidence 5 3334444443333
No 58
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.4e-31 Score=306.31 Aligned_cols=204 Identities=22% Similarity=0.177 Sum_probs=150.2
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-C
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-H 313 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 313 (537)
|+|++..|+||+++|..+.+.++.++.+. ||++.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++. +
T Consensus 671 P~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~ 750 (1084)
T PLN02959 671 PFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGD 750 (1084)
T ss_pred CCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCC
Confidence 78999999999999998888888887764 777766888999999999999999999999999999999999999987 8
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHH
Q 009321 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 393 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~ 393 (537)
+.+|.+|+++.+..+...+.++...+.+....-............|+|+++.++.+...+.++| +++++..|+..-+++
T Consensus 751 ~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~~~Ye 829 (1084)
T PLN02959 751 GVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKSGFYD 829 (1084)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHH
Confidence 8899999999887766655544332222211000000111123468999999999999999999 899999999982333
Q ss_pred HHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 394 ALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 394 l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
|......|...+. .. . .....+..+|..++.+|. |+|. .++++|+.+
T Consensus 830 l~~~k~~yr~~~~----~~-~----~~~~~L~~vl~~~l~LLaP~~Pf-iaEEiW~~l 877 (1084)
T PLN02959 830 LQAARDEYRLSCG----SG-G----MNRDLVWRFMDVQTRLITPICPH-YAEHVWREI 877 (1084)
T ss_pred HHHhHHHHhhccc----cc-h----HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhc
Confidence 4433333321111 00 0 112245567777888885 8888 789999987
No 59
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-29 Score=270.45 Aligned_cols=409 Identities=18% Similarity=0.186 Sum_probs=278.4
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHH----HHHHHHHcC-CC----------
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLG-EN---------- 101 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~k----i~~~a~~~g-~~---------- 101 (537)
.+...|++++|+|+|.+|||||-+..+-|+++|+.|+.||.|.++.|+|.-|-- +.+.-.+.| .+
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~ 153 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFL 153 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHH
Confidence 457778899999999999999999999999999999999999999999887632 112222222 22
Q ss_pred --hHHHHHHHHHHHHHHHHHcCCCCCCC---ccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC------------
Q 009321 102 --PLSLSNRYCQEYLVDMADLQCLPPTY---QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------ 164 (537)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~L~i~~~~~---~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------ 164 (537)
.+++-++|...+.+.+++||.+.+-. |.--...-..+.+.|-+|.++|++|+..+-|.+|+.-
T Consensus 154 ~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ 233 (995)
T KOG0432|consen 154 KEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESV 233 (995)
T ss_pred HHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecce
Confidence 57788999999999999999984211 1111134456888999999999999999888888651
Q ss_pred ---------CCCC------CCCc-------c---------hhchh-----------------------------------
Q 009321 165 ---------SPNY------GRLS-------G---------QRLEN----------------------------------- 178 (537)
Q Consensus 165 ---------~~~y------g~ls-------~---------~~l~~----------------------------------- 178 (537)
.|.| |.|. + ...+.
T Consensus 234 ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPi 313 (995)
T KOG0432|consen 234 EIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPI 313 (995)
T ss_pred ecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccce
Confidence 1111 1100 0 00000
Q ss_pred -------hhcCCC-ccccccccCcccccccccc-----------------------------------------------
Q 009321 179 -------NRAGER-VAVDSRKRNPADFALWKAA----------------------------------------------- 203 (537)
Q Consensus 179 -------~~~g~~-~~~~~~k~~~~df~lwk~~----------------------------------------------- 203 (537)
+.-|+. |.+. .-++|.|+.++++.
T Consensus 314 I~D~~Vd~~fGTGaVKIT-PaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~ 392 (995)
T KOG0432|consen 314 ICDIAVDMEFGTGAVKIT-PAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKE 392 (995)
T ss_pred eecccccccccccceEec-CCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccC
Confidence 000110 0000 01222333332210
Q ss_pred ---------------------------------------cCC-----------------------CCccccCCCCCCCch
Q 009321 204 ---------------------------------------KAG-----------------------EPSWDSPWGPGRPGW 221 (537)
Q Consensus 204 ---------------------------------------~~g-----------------------~~~w~~~wG~g~PgW 221 (537)
+.| .+++...||.-+|.|
T Consensus 393 ~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy 472 (995)
T KOG0432|consen 393 NHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAY 472 (995)
T ss_pred CCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhcccccee
Confidence 001 112234689999988
Q ss_pred hhhHH-----------------H---HHHh----------------------------hcCC-----------CeeEEEe
Q 009321 222 HIECS-----------------A---MSAH----------------------------YLSS-----------KFDIHGG 242 (537)
Q Consensus 222 ~iecs-----------------~---~~~~----------------------------~~g~-----------~~dih~~ 242 (537)
++-.+ | ++.+ .||+ +.++.=.
T Consensus 473 ~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllET 552 (995)
T KOG0432|consen 473 FVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLET 552 (995)
T ss_pred eeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhc
Confidence 76210 0 0000 1233 3345566
Q ss_pred cccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHH----------------------
Q 009321 243 GIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------------------- 298 (537)
Q Consensus 243 G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~---------------------- 298 (537)
|.|++||+..-.+.+..-++|+ ||.++++| ++|.. .|+|||||+||||+|.|+++
T Consensus 553 G~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~ 631 (995)
T KOG0432|consen 553 GHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVE 631 (995)
T ss_pred CchHHHHHHHHHHHhhhhhcCCCCchheeec-hhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHH
Confidence 9999987664444444445565 88888775 89998 89999999999999999997
Q ss_pred --------Hc-------CchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cC----CCC-C
Q 009321 299 --------RY-------HPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ-EH----GKT-A 356 (537)
Q Consensus 299 --------~~-------~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~-~~----~~~-~ 356 (537)
.| |.|+|||.|++. .-.++++++...+...+....+|||+.+.+...+.+.. .. ... .
T Consensus 632 ~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~ 711 (995)
T KOG0432|consen 632 KAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNE 711 (995)
T ss_pred HHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCc
Confidence 24 999999999996 88899999999999999999999999888777654421 10 011 1
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHh
Q 009321 357 R-INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 433 (537)
Q Consensus 357 ~-~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~ 433 (537)
. .+.|+++.+....+.+.+.| +.+|+..|... ++.|. ..+.-|++..++................+...|...|.
T Consensus 712 ~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a-~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLr 789 (995)
T KOG0432|consen 712 SLVDEWILSRLAEAVEEVNESL-EARNFHLATSA-LYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLR 789 (995)
T ss_pred chhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH-HHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 68999999999999999999 99999999998 88876 34677888777643222112222233455567778888
Q ss_pred hcc-cCCCCChHHHHHHH
Q 009321 434 ILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 434 vLG-i~~~~~~~~~~~~~ 450 (537)
+|. ++|. -+++.|+.+
T Consensus 790 ll~PfMPF-vtEel~qrl 806 (995)
T KOG0432|consen 790 LLHPFMPF-ITEELWQRL 806 (995)
T ss_pred HhcCcccc-cHHHHHHhc
Confidence 885 8998 789999886
No 60
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.9e-30 Score=278.98 Aligned_cols=279 Identities=18% Similarity=0.180 Sum_probs=187.4
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhH--HH-------HHHHHHcCCC---------
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KI-------IRRANDLGEN--------- 101 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~--ki-------~~~a~~~g~~--------- 101 (537)
.-++.||++|+|.+||||+|+++.+|+++|+||.+|++|.|++++||||. || ...++..|.+
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 47888999999999999999999999999999999999999999999985 44 1234445655
Q ss_pred -hHHHHHHHHHHHHHHHHHcCCCCCCCccchhh-hHHH-HHHHHHHHHHCCceeee--------ccceeecC-CCCCCCC
Q 009321 102 -PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HMEQ-IKDMITQIINNDCAYVV--------EGDVFFAV-EKSPNYG 169 (537)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~-~~~~-~~~~~~~L~~kG~ay~~--------~~~v~f~~-~~~~~yg 169 (537)
+++++++|.+.|.+.++.+||. ++.+.++.. +-.. ...+...|.+++.+... ..+.|+.. .-|+.||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~-~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg 182 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIE-YEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKCG 182 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCc-eEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCC
Confidence 7999999999999999999998 564433331 1112 22223333333433221 12233332 2589999
Q ss_pred CCcchhchhhhc-CCCccccccccCcccccccccccCCCCccccC-CCCCCCchhhhHHHHHHhhcCCCeeEEEecccCc
Q 009321 170 RLSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSP-WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (537)
Q Consensus 170 ~ls~~~l~~~~~-g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~-wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~ 247 (537)
++....+.+... ..+|...+.. |...+.+. =|.|.-.|.++++ |.+.++ .+|+.++|+||.
T Consensus 183 ~~~~~~~~~~d~~~~~v~y~~~c--------------G~~~~~~~~~g~~KL~Wr~dW~-~rW~~l--~Vd~e~~GkDh~ 245 (510)
T PRK00750 183 KVLTTPVISYDAEAGTVTYDCEC--------------GHEGEVPVTGGHGKLQWKVDWP-MRWAAL--GVDFEPFGKDHA 245 (510)
T ss_pred ccceEEEEEEeCCCCEEEEEcCC--------------CCEEEEecCCCCcccCCCCCcH-HHHHHc--CCCEEeeCcccC
Confidence 976544322211 1123222111 11111110 0233333444332 233456 489999999977
Q ss_pred CcchhHHHHHHh-hccCCCCceEEEEeeeeeeC-CccccccCCCcccHHHHHHHcCchhhHHHHhh-cCcCCCcccCHHH
Q 009321 248 FPHHENEIAQSC-AACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQ 324 (537)
Q Consensus 248 fpH~~~~~a~~~-a~~~~~~~~~~~h~g~v~~~-G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~ 324 (537)
.+++.....++. +++.++|. . +|+||++++ |+|||||+||+|++.|+++.++|+++|||++. .++.++++|++
T Consensus 246 ~~s~~~~~~i~~~ilg~~~P~-~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~-- 321 (510)
T PRK00750 246 SASYDTSKKIAREILGGEPPE-P-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV-- 321 (510)
T ss_pred cchHHHHHHHHHHHcCCCCCe-e-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--
Confidence 742223344444 56655543 3 678999997 99999999999999999999999999988775 59999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009321 325 LDSASDAVFYIYQTLQ 340 (537)
Q Consensus 325 l~~~~~~l~~l~~~~~ 340 (537)
+..+.+.+.++...+.
T Consensus 322 l~~~~dey~rl~~~~~ 337 (510)
T PRK00750 322 IPKLVDEYDRFERKYF 337 (510)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777776665553
No 61
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.97 E-value=7.6e-30 Score=245.97 Aligned_cols=203 Identities=20% Similarity=0.129 Sum_probs=161.0
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
+|.+-.++|||+|++||||+|++|++|+|+|+|++.|++|.+++++||+|+||...|...+ .|+++++.+.+.|.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999999999999997664 499999999999999999
Q ss_pred HcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCccccc
Q 009321 119 DLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198 (537)
Q Consensus 119 ~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~ 198 (537)
+|||. +|.++++|++++.++++++.|.++|++|+.+|.+||++.++ + .. .|+.
T Consensus 80 ~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~---~----------------------~~-~d~v 132 (212)
T cd00671 80 RLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEF---G----------------------DD-KDRV 132 (212)
T ss_pred HhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhh---C----------------------CC-CCeE
Confidence 99999 68999999999999999999999999999999999987543 1 11 2555
Q ss_pred ccccccCCCCccccCCCCCCCchh---hhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH---HhhccCCCCceEEEE
Q 009321 199 LWKAAKAGEPSWDSPWGPGRPGWH---IECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMH 272 (537)
Q Consensus 199 lwk~~~~g~~~w~~~wG~g~PgW~---iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~---~~a~~~~~~~~~~~h 272 (537)
+.|+ .|.|.++ ++|...-.. ++....|.+.|.| |+.....+ +.+++..+.+++ .|
T Consensus 133 l~rs-------------dG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~----~~~~~~~~~~~~~~lg~~~~~~~-~h 193 (212)
T cd00671 133 LVRS-------------DGTYTYFTRDIAYHLDKFE-RGADKIIYVVGAD----HHGHFKRLFAALELLGYDEAKKL-EH 193 (212)
T ss_pred EEEC-------------CCCccchHHHHHHHHHHHh-cCCCEEEEEECCC----HHHHHHHHHHHHHHcCCCCCCCe-EE
Confidence 6554 3556665 344332222 4656778899999 55444433 344443323333 44
Q ss_pred e--eeeeeC-CccccccCC
Q 009321 273 N--GHVTNN-NEKMSKSLG 288 (537)
Q Consensus 273 ~--g~v~~~-G~KMSKS~G 288 (537)
. |+|+.. |+|||||.|
T Consensus 194 ~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 194 LLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEEeEEcCCCCCCCCCCC
Confidence 4 788875 999999987
No 62
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.96 E-value=1.1e-29 Score=280.01 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=99.3
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHc-CC----------------ChH
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GE----------------NPL 103 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~-g~----------------~~~ 103 (537)
.+....|+++|.+||||++++++.|+++||.|++|++|.|+.|+|.+|.+|+..+.+. |. .+.
T Consensus 26 ~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~ 105 (601)
T PF00133_consen 26 FIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECR 105 (601)
T ss_dssp EEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHH
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhc
Confidence 3444456666999999999999999999999999999999999999999999888653 33 267
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeccceeecCCC
Q 009321 104 SLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~i~~~~~~~r~s---~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~ 164 (537)
++++.+.+.+.+++++||+..+-..+..| .+...++..|.+|.++|++|+....|+||+.+
T Consensus 106 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~ 169 (601)
T PF00133_consen 106 EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTT
T ss_pred chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCccc
Confidence 89999999999999999997432222223 68889999999999999999999999999885
No 63
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.96 E-value=4.7e-29 Score=266.21 Aligned_cols=272 Identities=15% Similarity=0.179 Sum_probs=180.8
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhh------------------HHHHHHHHHcCCC
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD------------------DKIIRRANDLGEN 101 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d------------------~ki~~~a~~~g~~ 101 (537)
.-++.||-+|+|.+||||+|.++.+|+++|++|.+|++|.||++.||+| .++...+...|..
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 4677888999999999999999999999999999999999999999995 3333333344654
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCccchhh----------------hHHHHHHHHHHHHHCCceeeeccceeec-CCC
Q 009321 102 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD----------------HMEQIKDMITQIINNDCAYVVEGDVFFA-VEK 164 (537)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~----------------~~~~~~~~~~~L~~kG~ay~~~~~v~f~-~~~ 164 (537)
.+++++|...|.+.|+.|||. ++ +.++|+ +.+.|.+++.....+ ...+.||. ..-
T Consensus 99 -~s~~~h~~~~~~~~l~~~gi~-~e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~-----~~~~~~~P~~pi 170 (515)
T TIGR00467 99 -TSYAEHFLIPFLESLPVLGIN-PE-FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTS-----KLEENWYPISVF 170 (515)
T ss_pred -HHHHHHHHHHHHHHHHHcCCe-EE-EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC-----ccCCCceeeeee
Confidence 999999999999999999997 33 334442 223333333333221 11123333 235
Q ss_pred CCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCcccc-CCCCCCCchhhhHHHHHHhhcCCCeeEEEec
Q 009321 165 SPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (537)
Q Consensus 165 ~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~-~wG~g~PgW~iecs~~~~~~~g~~~dih~~G 243 (537)
||.||++....+ +.....+|...+.. |...+.+ .=|.|.-.|.++++ |.+..| .+|+...|
T Consensus 171 c~~cGrv~~~~~-~~~~~~~v~Y~c~c--------------G~~g~~~~~~g~~KL~WkvdW~-~RW~~l--gV~~Ep~G 232 (515)
T TIGR00467 171 CENCGRDTTTVN-NYDNEYSIEYSCEC--------------GNQESVDIYTGAIKLPWRVDWP-ARWKIE--KVTFEPAG 232 (515)
T ss_pred cCCcCccCceEE-EecCCceEEEEcCC--------------CCEEEEeecCCCcccCCCCCcH-hhHhhh--CcccccCC
Confidence 899999754222 22222233332211 1111110 01222233333332 223345 48999999
Q ss_pred ccCcCcch----hHHHHHHhhccCCCCceEEEEeeeeee--CCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCC
Q 009321 244 IDLIFPHH----ENEIAQSCAACQDSNVSYWMHNGHVTN--NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317 (537)
Q Consensus 244 ~Dl~fpH~----~~~~a~~~a~~~~~~~~~~~h~g~v~~--~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~ 317 (537)
+||.-+-. ...+|+ +++++.+|..+ .++|+.+ +|+|||||+||+|+++|+++.++++++||++++.+++++
T Consensus 233 kDH~~~ggsy~~~~~ia~-~~l~~~~P~~~--~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ 309 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAK-EIFQYSPPVTV--QYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFH 309 (515)
T ss_pred CCccCccCCchhHHHHHH-HHhCCCCCcCc--EEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCC
Confidence 99543221 123333 56666655432 2456545 667999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHH
Q 009321 318 LNYSVLQLDSASDAVFYIYQTLQD 341 (537)
Q Consensus 318 ~~fs~~~l~~~~~~l~~l~~~~~~ 341 (537)
++|+++.+ ++...+.++...+..
T Consensus 310 ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 310 ISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred CcCCHHHH-HHHHHHHHHHHHHHh
Confidence 99999988 888888777766644
No 64
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=257.35 Aligned_cols=369 Identities=17% Similarity=0.171 Sum_probs=253.1
Q ss_pred CCCcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 009321 36 VRGKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113 (537)
Q Consensus 36 ~~~~v~~y~~--gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~ 113 (537)
+.++-+ |+- -|-|+|.|||||.|.|.+.|+++||.|++||+|++.+|+|-+|.+-++.|.+.|+.|..++..+++.+
T Consensus 54 d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 54 DKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred ccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 334444 444 46666999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCC--------CC------CC------
Q 009321 114 LVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP--------NY------GR------ 170 (537)
Q Consensus 114 ~~~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~--------~y------g~------ 170 (537)
++.|..||+.++ |.+..+. +|....|.+|.+|.++|+||..+-.|.+|+-.+. .- |.
T Consensus 133 k~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~ 212 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKK 212 (876)
T ss_pred HHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHH
Confidence 999999999852 2333332 8999999999999999999999988888876320 00 00
Q ss_pred ---------------------------------------------------------------------------C--cc
Q 009321 171 ---------------------------------------------------------------------------L--SG 173 (537)
Q Consensus 171 ---------------------------------------------------------------------------l--s~ 173 (537)
| ++
T Consensus 213 LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H 292 (876)
T KOG0435|consen 213 LRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSH 292 (876)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCc
Confidence 0 00
Q ss_pred h------hchh-hh-------------------cCCCcc-------cccc---------ccCcccccccccc--------
Q 009321 174 Q------RLEN-NR-------------------AGERVA-------VDSR---------KRNPADFALWKAA-------- 203 (537)
Q Consensus 174 ~------~l~~-~~-------------------~g~~~~-------~~~~---------k~~~~df~lwk~~-------- 203 (537)
. .+.+ +. .|..+- ++++ -.+.+|+.+|..-
T Consensus 293 ~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~ 372 (876)
T KOG0435|consen 293 SLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICI 372 (876)
T ss_pred hhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEE
Confidence 0 0000 00 000000 0001 1122466666540
Q ss_pred --------c----------------------------CC-C----------CccccCCCCCCCchhh-------------
Q 009321 204 --------K----------------------------AG-E----------PSWDSPWGPGRPGWHI------------- 223 (537)
Q Consensus 204 --------~----------------------------~g-~----------~~w~~~wG~g~PgW~i------------- 223 (537)
+ .| . +++..-||.++|-=|+
T Consensus 373 ~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~L 452 (876)
T KOG0435|consen 373 EVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESEL 452 (876)
T ss_pred eeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHC
Confidence 0 00 0 1223358888873222
Q ss_pred --------------------------hHH-----------HH-----HH-hhc---C----------------CCeeEEE
Q 009321 224 --------------------------ECS-----------AM-----SA-HYL---S----------------SKFDIHG 241 (537)
Q Consensus 224 --------------------------ecs-----------~~-----~~-~~~---g----------------~~~dih~ 241 (537)
.|. .| +. -|| . -|+||++
T Consensus 453 PV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYI 532 (876)
T KOG0435|consen 453 PVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYI 532 (876)
T ss_pred CcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEe
Confidence 110 11 11 111 1 2899999
Q ss_pred ecccCcCcchhHHHHHHhhcc-------CCCCceEEEEeeee-----------------------------ee--CC---
Q 009321 242 GGIDLIFPHHENEIAQSCAAC-------QDSNVSYWMHNGHV-----------------------------TN--NN--- 280 (537)
Q Consensus 242 ~G~Dl~fpH~~~~~a~~~a~~-------~~~~~~~~~h~g~v-----------------------------~~--~G--- 280 (537)
||+.|..-|..+-...+.-+. .+||.++ +..|+| .+ ++
T Consensus 533 GG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~L-i~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~ 611 (876)
T KOG0435|consen 533 GGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKL-ITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVV 611 (876)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHH-HhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcce
Confidence 999987777655443332221 1233332 223332 11 12
Q ss_pred ----ccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC--ccccCC
Q 009321 281 ----EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS--PFQEHG 353 (537)
Q Consensus 281 ----~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~--~~~~~~ 353 (537)
+|||||++|.|.|.|++.+||+|++|+|+|-. +++++++|+...|....+.+.+++....++...-. ...+..
T Consensus 612 v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~ 691 (876)
T KOG0435|consen 612 VVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLK 691 (876)
T ss_pred eeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 48999999999999999999999999999886 99999999999999999999999988777655421 111111
Q ss_pred CC----CCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcc
Q 009321 354 KT----ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 407 (537)
Q Consensus 354 ~~----~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~ 407 (537)
.. ....+.+.+..+.++..+.+.+...+.+..||+. ++.|.+.+.+.+.....
T Consensus 692 ~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~-~m~ltN~l~~a~k~~~~ 748 (876)
T KOG0435|consen 692 KLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISD-MMGLTNALKKALKIVLV 748 (876)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhh
Confidence 11 1223567888899999999999888889999999 99999888776654443
No 65
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.2e-25 Score=236.80 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=154.0
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHHHHHHH------cCchhhHH
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER------YHPLALRH 307 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~------~~~d~lR~ 307 (537)
..|+..-|.|...-+.---.-.+.|..++ |+..+++ |||... +|.|||||+||||+|+.++++ ||+|+|||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~viv-HGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIV-HGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheee-eeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 46788889994332222222233454454 6667745 599888 899999999999999999998 99999999
Q ss_pred HHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCC------CCCCChHHHHHHHHHHHHHHHHHHccc
Q 009321 308 FLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK------TARINPAAEDCINKLRDEFHARMSDDL 381 (537)
Q Consensus 308 ~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~------~~~~~~~l~~~l~~~~~~v~~am~dd~ 381 (537)
|.++..+..++...+..|.++...+.+++++++.+.+.+.+...... ..-+|+.++.++.++.+++.+.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99988999999999999999999999999999999888876543211 12247889999999999999999 999
Q ss_pred CchhhhHHHHHHHHHH-H-HHHHhhhcccCc--hhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 382 NTSHILTGAFQDALKF-I-NSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 382 n~~~al~~~L~~l~~~-~-N~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
++.+++.. |..|... + |-|++-.+.... ...+..|...-..+.+.+..+..++. |.|. -.+++|+.+
T Consensus 724 ~f~kVv~~-lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~-LaeEvwq~l 795 (937)
T KOG0433|consen 724 KFRKVVND-LQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPH-LAEEVWQHL 795 (937)
T ss_pred cHHHHHHH-HHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHhC
Confidence 99999999 8888753 3 445544332111 11234444433344445555555553 7776 578888875
No 66
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.94 E-value=5.5e-27 Score=250.71 Aligned_cols=260 Identities=24% Similarity=0.256 Sum_probs=198.0
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
+|+|.+. |+|+|+|++||||+|++++.+.++| +|+..|+..+||.|++| .| ....|.+.+.++
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-~R----------~~~e~~~~I~ed 161 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-KR----------PDPEAYDMILED 161 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-cc----------chHHHHHHHHHH
Confidence 5678888 8999999999999999999999999 68899999999999876 22 123466999999
Q ss_pred HHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC----CCCCC------CCcch-hc---hhhhcC
Q 009321 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYG------RLSGQ-RL---ENNRAG 182 (537)
Q Consensus 117 l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~----~~~yg------~ls~~-~l---~~~~~g 182 (537)
|++||+. +|..+++|+|++.+.+++++|+++|+|| ++||... ...+| .++.. .+ ++|..|
T Consensus 162 L~wLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY-----~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G 235 (567)
T PRK04156 162 LKWLGVK-WDEVVIQSDRLEIYYEYARKLIEMGGAY-----VCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDG 235 (567)
T ss_pred HHHcCCC-CCCccCcccCHHHHHHHHHHHHHcCCCc-----cCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcC
Confidence 9999997 5778899999999999999999999999 5555431 11112 12221 11 233333
Q ss_pred C--------CccccccccCc--ccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcC---c
Q 009321 183 E--------RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---P 249 (537)
Q Consensus 183 ~--------~~~~~~~k~~~--~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~f---p 249 (537)
. |+..+....++ +||++|+......+ .||.++++|+.- .|...+|.|..|++|++ .
T Consensus 236 ~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~----~~Gd~~~i~PtY-------~fA~~VDD~l~GITHViRg~d 304 (567)
T PRK04156 236 EYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHP----RVGDKYRVWPTY-------NFAVAVDDHLLGVTHVLRGKD 304 (567)
T ss_pred ccccCCeEEEEECcccCCCCCccccEEEEEcCCCcc----ccCCCeEEEEEe-------ccCceeeecCCCCCeEEcccc
Confidence 3 22233223344 79999987544333 288887777531 36668999999999999 8
Q ss_pred chhHHHHHHhhcc--CCCCceEEEEeeeeeeCCccccccC-------C--------CcccHHHHHHH-cCchhhHHHHhh
Q 009321 250 HHENEIAQSCAAC--QDSNVSYWMHNGHVTNNNEKMSKSL-------G--------NFFTIRQITER-YHPLALRHFLIS 311 (537)
Q Consensus 250 H~~~~~a~~~a~~--~~~~~~~~~h~g~v~~~G~KMSKS~-------G--------n~i~~~dll~~-~~~d~lR~~ll~ 311 (537)
|+.+.+.|...+. +.+++ .|+|.+.|+++|.|||||+ | +..|+..+... |.|+++|.|+++
T Consensus 305 ~~~~t~~Q~~l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~ 383 (567)
T PRK04156 305 HIDNTEKQRYIYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIE 383 (567)
T ss_pred cccChHHHHHHHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999886543 44445 4599999999999999998 5 34678888774 999999999998
Q ss_pred cCcC-CCcccCHHHHHHHHHH
Q 009321 312 AHYR-SPLNYSVLQLDSASDA 331 (537)
Q Consensus 312 ~~~~-~~~~fs~~~l~~~~~~ 331 (537)
..++ ++..|+++.|.+..+.
T Consensus 384 lG~s~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 384 VGVKETDATISWENLYAINRK 404 (567)
T ss_pred hCCCCCCcccCHHHHHHHHHH
Confidence 8777 8999999999877654
No 67
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.94 E-value=3.6e-26 Score=206.91 Aligned_cols=142 Identities=27% Similarity=0.314 Sum_probs=131.1
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
+++|||+|+|++||||+|+++.+|+++|+||++|++|.+++++||+|++|...|.+.+.+++++++++.+.|.++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE--- 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccc
Q 009321 122 CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWK 201 (537)
Q Consensus 122 i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk 201 (537)
T Consensus 78 -------------------------------------------------------------------------------- 77 (143)
T cd00802 78 -------------------------------------------------------------------------------- 77 (143)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee-CC
Q 009321 202 AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NN 280 (537)
Q Consensus 202 ~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G 280 (537)
|+++|+++...+.+...+++++|+|+.+ |+.+..++.+++++.. +..++|.|+|+. +|
T Consensus 78 -------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g 136 (143)
T cd00802 78 -------------------YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADG 136 (143)
T ss_pred -------------------HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCC
Confidence 8999999988877767899999999999 9999999999887543 345699999998 56
Q ss_pred ccccccC
Q 009321 281 EKMSKSL 287 (537)
Q Consensus 281 ~KMSKS~ 287 (537)
+|||||+
T Consensus 137 ~KmSks~ 143 (143)
T cd00802 137 TKMSKSK 143 (143)
T ss_pred CcCCCCC
Confidence 9999995
No 68
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.91 E-value=7.5e-25 Score=220.96 Aligned_cols=278 Identities=17% Similarity=0.223 Sum_probs=153.3
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhH--HHHHHHHH------cCCC--------
Q 009321 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KIIRRAND------LGEN-------- 101 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~--ki~~~a~~------~g~~-------- 101 (537)
+..-++-||-+|+|.+||||+|..+++|+++|.|+.+|.+|.+|..+||+|. ||....-+ .|.+
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 4567788899999999999999999999999999999999999999999984 33221111 1222
Q ss_pred --hHHHHHHHHHHHHHHHHHcCCCCCCC-----ccchh----------hhHHHHHHHHHHHHHCCceeeeccceeecCCC
Q 009321 102 --PLSLSNRYCQEYLVDMADLQCLPPTY-----QPRVS----------DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (537)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~L~i~~~~~-----~~r~s----------~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~ 164 (537)
...++++|...|.+.|+.+||.. +. ..+.- ++.+.|.+++.....+. ...+...|. .-
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~-e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~~~y~Pf~--pi 176 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEY-EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RPETYSPFL--PI 176 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT----EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----TT--SEE--EE
T ss_pred CCCccHHHHHHHHHHHHHHHcCCce-EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CCCCeeeee--ee
Confidence 37899999999999999999973 21 11111 45555666666554433 111222222 24
Q ss_pred CCCCCCCcchhchhhh-cCCCccccccccCcccccccccccCCCCcccc-CCCCCCCchhhhHHHHHHhhcCCCeeEEEe
Q 009321 165 SPNYGRLSGQRLENNR-AGERVAVDSRKRNPADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 165 ~~~yg~ls~~~l~~~~-~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~-~wG~g~PgW~iecs~~~~~~~g~~~dih~~ 242 (537)
|+.||++....+.+.. ++.+|...+ ..-|...+.+ .=|.|...|.++++ |.+.++| +|+..+
T Consensus 177 C~~cGri~tt~v~~~d~~~~~v~Y~c-------------~~cG~~g~~~i~~g~gKL~WkvDW~-mRW~~lg--VdfEp~ 240 (360)
T PF01921_consen 177 CEKCGRIDTTEVTEYDPEGGTVTYRC-------------EECGHEGEVDITGGNGKLQWKVDWP-MRWAALG--VDFEPF 240 (360)
T ss_dssp ETTTEE--EEEEEEE--SSSEEEEE---------------TTS---EEETTTT-EEE-HHHHHH-HHHHHTT---SEEEE
T ss_pred ccccCCcccceeeEeecCCCEEEEEe-------------cCCCCEEEEecCCCcccccCCCcCh-hhhhhcC--ceeccC
Confidence 8899996554443332 122332221 1112211211 12456667887775 3445664 899999
Q ss_pred cccCcCcchhHHHHHHhh---ccCCCCceEEEEeeeeeeCCc-cccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCc
Q 009321 243 GIDLIFPHHENEIAQSCA---ACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318 (537)
Q Consensus 243 G~Dl~fpH~~~~~a~~~a---~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~ 318 (537)
|+||.-+-.....+...| ++.+||. . +.++|++++|. |||||+||+++++|+|+-+.|++|||+++++.+.+..
T Consensus 241 GKDH~~~GGS~d~~~~I~~~i~g~~pP~-~-~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~~~ 318 (360)
T PF01921_consen 241 GKDHASPGGSYDTSKRIAREILGYEPPV-P-FPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNKAK 318 (360)
T ss_dssp EHHHHCTTSHHHHHHHHHHHCC-----E-E-EEE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS-E
T ss_pred CCccCCCCCChhhHHHHHHHHhCCCCCC-C-CCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCcce
Confidence 999766655555554443 4444444 3 56899999776 9999999999999999999999999999999899999
Q ss_pred ccCHH-HHHHHHHHHHHHHHH
Q 009321 319 NYSVL-QLDSASDAVFYIYQT 338 (537)
Q Consensus 319 ~fs~~-~l~~~~~~l~~l~~~ 338 (537)
+|+.+ .+-.....+.++.+.
T Consensus 319 ~~~~~~~i~~~~Deyd~~~~~ 339 (360)
T PF01921_consen 319 DFSFDLVIPRLYDEYDRLERK 339 (360)
T ss_dssp EE--STTHHHHHHHHHHHHHH
T ss_pred EeccCcchHHHHHHHHHHHHH
Confidence 99888 777666666544443
No 69
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=9.9e-24 Score=217.93 Aligned_cols=276 Identities=15% Similarity=0.171 Sum_probs=187.7
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhH--HH----HH-HHHH--cCCC--------
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KI----IR-RAND--LGEN-------- 101 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~--ki----~~-~a~~--~g~~-------- 101 (537)
.--++-+|.||+|.+||||+|..+.+|+++|.|+.+|++|.+|.-.||+|. |+ .. .+.+ .|++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 345778899999999999999999999999999999999999999999984 21 10 1111 2433
Q ss_pred --hHHHHHHHHHHHHHHHHHcCCCCCCCccchh----------------hhHHHHHHHHHHHHHCCceeeeccceeec-C
Q 009321 102 --PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS----------------DHMEQIKDMITQIINNDCAYVVEGDVFFA-V 162 (537)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s----------------~~~~~~~~~~~~L~~kG~ay~~~~~v~f~-~ 162 (537)
...+++++...|.+.|+.+||.. + +.++| ++.+++.+++.+-..+ .... -|+. .
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~-E-~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~e-~~~P~~ 171 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV-E-FVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELEE-DWSPFM 171 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce-E-EEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC----cccC-Cceecc
Confidence 57899999999999999999973 3 23333 3445555555555444 1111 2222 2
Q ss_pred CCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEe
Q 009321 163 EKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 163 ~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~ 242 (537)
.-|+.||++....+.+.....++...+..-+. ..+--....+...|...|+.- | .+| .+|+...
T Consensus 172 piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~--g~v~ir~g~~KL~WRvdWp~R---W---------~~l--gVd~EPf 235 (521)
T COG1384 172 PICEKCGRILTTPVIEWDGEGTVEYRCECGHE--GEVDIRGGEGKLPWRVDWPMR---W---------AAL--GVDFEPF 235 (521)
T ss_pred ccccccCCcceeEEEEecCCceEEEEecCCcc--ceeeccccCcccccCcCccch---h---------hcc--CcccccC
Confidence 35899999655555444323345443322111 001111112223344444432 3 345 4899999
Q ss_pred cccCcCcchhHHHHHHhh--ccC-CCCceEEEEeeeeeeCC-ccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCc
Q 009321 243 GIDLIFPHHENEIAQSCA--ACQ-DSNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318 (537)
Q Consensus 243 G~Dl~fpH~~~~~a~~~a--~~~-~~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~ 318 (537)
||||.-+-..+..+-..+ .+| +||..+ .++|++++| +|||||+||+|+++|+++-+.|+.|||+++++.+.+.+
T Consensus 236 GKDH~a~ggSydtg~~I~~ei~g~~pP~~~--~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~ 313 (521)
T COG1384 236 GKDHAAAGGSYDTGKRIAREIFGYEPPVPF--VYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHI 313 (521)
T ss_pred CcccccccCchHHHHHHHHHhcCCCCCCCC--ceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCcce
Confidence 999666666565543333 234 666654 369999977 89999999999999999999999999999999888889
Q ss_pred ccCHHH-HHHHHHHHHHHHHHH
Q 009321 319 NYSVLQ-LDSASDAVFYIYQTL 339 (537)
Q Consensus 319 ~fs~~~-l~~~~~~l~~l~~~~ 339 (537)
+|+.+. |-+....+.++...+
T Consensus 314 ~~d~~~~il~lvDEydr~e~~Y 335 (521)
T COG1384 314 DFDFDLGILKLVDEYDRLERIY 335 (521)
T ss_pred ecCCCCChhHHHHHHHHHHHHH
Confidence 888888 777776665555444
No 70
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-21 Score=195.98 Aligned_cols=357 Identities=13% Similarity=0.110 Sum_probs=253.6
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHH------------------------
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI------------------------ 91 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki------------------------ 91 (537)
..++|-+..++|+....+|+||+|+.|++|.++|.|++.|++|..++++.|||+..
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 34788889999999999999999999999999999999999999999999998531
Q ss_pred -----------------HHHHHHc-----CC------ChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHH
Q 009321 92 -----------------IRRANDL-----GE------NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMIT 143 (537)
Q Consensus 92 -----------------~~~a~~~-----g~------~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~ 143 (537)
-.||.+. |. .|..+|+-...+|...+++|.|+- .....|.|.+.|.++++
T Consensus 266 QvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l--~e~GESFYq~~m~~vve 343 (656)
T KOG4426|consen 266 QVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISL--KERGESFYQDRMAEVVE 343 (656)
T ss_pred HHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchH--hhcchhhhhhHHHHHHH
Confidence 1122111 22 267899999999999999999973 34456789999999999
Q ss_pred HHHHCCceeeeccc-eeecCCCCCCCCCCcchhchhhh-cCCCccccccccCcccc-cccccccCCCCccccCCCCCCCc
Q 009321 144 QIINNDCAYVVEGD-VFFAVEKSPNYGRLSGQRLENNR-AGERVAVDSRKRNPADF-ALWKAAKAGEPSWDSPWGPGRPG 220 (537)
Q Consensus 144 ~L~~kG~ay~~~~~-v~f~~~~~~~yg~ls~~~l~~~~-~g~~~~~~~~k~~~~df-~lwk~~~~g~~~w~~~wG~g~Pg 220 (537)
.|..+|++.+.+|. +.|... |+- .+.-+. +|. . .-+..|. ++|-+-.+. .
T Consensus 344 el~~kglvee~~Gr~i~f~~g----~~I----PLtvVKSDGG-f-----tYdtsDlaAl~yRl~EE-----------k-- 396 (656)
T KOG4426|consen 344 ELKSKGLVEEDDGRRIMFPEG----CDI----PLTVVKSDGG-F-----TYDTSDLAALKYRLNEE-----------K-- 396 (656)
T ss_pred HHhcCCceeecCCceEeccCC----CCc----ceEEEecCCC-c-----ccccchHHHHHHHHHHh-----------h--
Confidence 99999999988763 555432 221 010000 111 0 0011233 233221110 0
Q ss_pred hhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHH---HHHhhccCCCCceEEEEeeeeee---CCccccccCCCcccHH
Q 009321 221 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTIR 294 (537)
Q Consensus 221 W~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~---a~~~a~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~~~ 294 (537)
....|++. |.-...|.+.+ |+..++..+..+++ -|.||..+ ||+|+-++.|.+|.+.
T Consensus 397 --------------adwiIYVv--D~GQs~Hf~t~fkAar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~ 459 (656)
T KOG4426|consen 397 --------------ADWIIYVV--DSGQSQHFNTIFKAARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLL 459 (656)
T ss_pred --------------cCeEEEEe--eCchhHHHHHHHHHHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHH
Confidence 01234443 33333444433 34444445566777 78888776 7889999999999999
Q ss_pred HHHHH-----------------------------cCchhhHHHHhhcCcCCCcccCHHHHHHHH-HHHHHHHHHHHHHHH
Q 009321 295 QITER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSAS-DAVFYIYQTLQDCEV 344 (537)
Q Consensus 295 dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~-~~l~~l~~~~~~~~~ 344 (537)
|||++ ++=..+.|.-|++..-++..||.+.|.+-+ |.--||.|+++|+++
T Consensus 460 DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcS 539 (656)
T KOG4426|consen 460 DLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICS 539 (656)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHH
Confidence 99962 233457888888877889999999987665 456689999999999
Q ss_pred hcCccccCC--------------CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCc
Q 009321 345 ALSPFQEHG--------------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (537)
Q Consensus 345 ~l~~~~~~~--------------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~ 410 (537)
+.++..... ...+.+..+-..+.++.+.+.+++ +++ +++.++.|+++++..+..||++|-....
T Consensus 540 I~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~~L-~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~ 617 (656)
T KOG4426|consen 540 IARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-DSL-FLHVLCDYLYELATLFTEFYDSCYVIEK 617 (656)
T ss_pred HHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHhhccEEecc
Confidence 987653210 112234456667788888888887 777 6999999999999999999999876532
Q ss_pred hh------hhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 411 KQ------QQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 411 ~~------~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.+ .+..|+.++.++..+++.++.+|||.|.
T Consensus 618 ~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~pV 653 (656)
T KOG4426|consen 618 NKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIKPV 653 (656)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhhHhhCCccc
Confidence 11 2356888899999999999999999764
No 71
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.89 E-value=1.1e-22 Score=210.42 Aligned_cols=242 Identities=20% Similarity=0.140 Sum_probs=155.5
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHH-------HHc----------
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-------NDL---------- 98 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a-------~~~---------- 98 (537)
.+.+|.+-.++|+|.||+||||+|+++++|+|+|+|++.||+|.-.+.+.|+|..|-.-+ .+.
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 97 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHL 97 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccch
Confidence 467899999999999999999999999999999999999999999999999986432111 100
Q ss_pred --------------------------------------CCChHHHHHH-HHHHHHHHHHHcCCCCCCCccchh--hhHHH
Q 009321 99 --------------------------------------GENPLSLSNR-YCQEYLVDMADLQCLPPTYQPRVS--DHMEQ 137 (537)
Q Consensus 99 --------------------------------------g~~~~~~~~~-~~~~~~~~l~~L~i~~~~~~~r~s--~~~~~ 137 (537)
.....++... ..+...++|.+|++. .|.+...+ .+.+.
T Consensus 98 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~-fDv~~~E~Es~~~~~ 176 (354)
T PF00750_consen 98 EDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR-FDVWFDESESFYSGK 176 (354)
T ss_dssp HHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHTTH
T ss_pred hhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCcccchhhhhhH
Confidence 0012234444 666788889999998 46655333 35567
Q ss_pred HHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCC
Q 009321 138 IKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPG 217 (537)
Q Consensus 138 ~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g 217 (537)
+.++++.|.++|++|+.+|.++++.+.+ |... |.+|-|+ .|
T Consensus 177 v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~~k-----------------------~~Vl~ks-------------DG 217 (354)
T PF00750_consen 177 VDEVLERLKEKGLLYESDGALWIDLTKF---GDDK-----------------------DRVLRKS-------------DG 217 (354)
T ss_dssp HHHHHHHHHCTTTEEEETTEEEEEGCCT---STSS------------------------EEEEET-------------TS
T ss_pred HHHHHHHHHhCCcEEecCCcEEEechhc---CCCC-----------------------cceEEcC-------------CC
Confidence 8889999999999999899998876543 2211 2222222 23
Q ss_pred CCchhhh-HHHHHHhh--cCCCeeEEEecccCcCcchhHH---HHHHhhccCCC-CceEEEEe--eeeee-CCc-ccccc
Q 009321 218 RPGWHIE-CSAMSAHY--LSSKFDIHGGGIDLIFPHHENE---IAQSCAACQDS-NVSYWMHN--GHVTN-NNE-KMSKS 286 (537)
Q Consensus 218 ~PgW~ie-cs~~~~~~--~g~~~dih~~G~Dl~fpH~~~~---~a~~~a~~~~~-~~~~~~h~--g~v~~-~G~-KMSKS 286 (537)
.+.|... +++...++ ++....|++.|.| |+... .+.+.+++..+ -.++ .|. |+++. +|+ ||||+
T Consensus 218 t~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~----q~~hf~~l~~~l~~lg~~~~~~~~-~H~~~g~vl~~~gk~~mstR 292 (354)
T PF00750_consen 218 TSTYLTRDIAYHLYRFEEYGFDKIIYVVGAD----QKGHFKQLFAILEALGYDPEAVKL-QHVSFGVVLLKDGKVKMSTR 292 (354)
T ss_dssp EB-HHHHHHHHHHHHHCCSS-SEEEEEEEGG----GHHHHHHHHHHHHHTT-HHHHCTE-EEEEE-EEEETTBEESS-TT
T ss_pred ceEEEcchHHHHHHHHhhhccccEEEEecCc----hhhHHHHHHHHHHHhCCCCCCCEE-EEEEEEEEEcCCCCccccCC
Confidence 3344311 22222333 5666779999999 55332 22233344312 1233 343 55544 787 89999
Q ss_pred CCCcccHHHHHH--------------------------HcCchhhHHHHhhcCcCCCcccCH
Q 009321 287 LGNFFTIRQITE--------------------------RYHPLALRHFLISAHYRSPLNYSV 322 (537)
Q Consensus 287 ~Gn~i~~~dll~--------------------------~~~~d~lR~~ll~~~~~~~~~fs~ 322 (537)
+||+|+++|||+ .++.+++||++|+....+++.|+|
T Consensus 293 ~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 293 KGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp TTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred CCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 999999999999 467888888888888888888875
No 72
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-20 Score=197.05 Aligned_cols=213 Identities=16% Similarity=0.159 Sum_probs=155.1
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCC-CceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhcC
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDS-NVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 313 (537)
|-|+..-|.|...-+.--....+.+++++| +.++ +.||.|+- ||+|||||+.|+-.|..++++||+|+||+|++++|
T Consensus 554 PadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSP 632 (1070)
T KOG0434|consen 554 PADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSP 632 (1070)
T ss_pred chHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCc
Confidence 556777788976655533344566777875 5566 78999988 99999999999999999999999999999999985
Q ss_pred c--CCCcccCHHHHHHHHHHH-HHHHHHHHHHHHh---cCcccc--------CCCCCCCChHHHHHHHHHHHHHHHHHHc
Q 009321 314 Y--RSPLNYSVLQLDSASDAV-FYIYQTLQDCEVA---LSPFQE--------HGKTARINPAAEDCINKLRDEFHARMSD 379 (537)
Q Consensus 314 ~--~~~~~fs~~~l~~~~~~l-~~l~~~~~~~~~~---l~~~~~--------~~~~~~~~~~l~~~l~~~~~~v~~am~d 379 (537)
. ..++.|.++.+.+..+.+ --++|++..+... +.+... ....+..|+|+....+.+..-+++.| +
T Consensus 633 VvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM-~ 711 (1070)
T KOG0434|consen 633 VVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM-D 711 (1070)
T ss_pred cccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-H
Confidence 4 578999999999887652 2344555443332 222110 01224468999999999999999999 9
Q ss_pred ccCchhhhHHHHHHHHHHH-HHHHhhhcccCch-hhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHH
Q 009321 380 DLNTSHILTGAFQDALKFI-NSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 380 d~n~~~al~~~L~~l~~~~-N~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
.+....++.. |..|+..+ |.|+.-++.-..+ .........+..+..+|..+..+|| +.|. -++-+++.++.
T Consensus 712 ~YrLytVvp~-llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF-~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 712 QYRLYTVVPR-LLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPF-FTEYIYQNLKK 785 (1070)
T ss_pred heehhhhHHH-HHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHh
Confidence 9999999999 99999876 7777655532212 2233455566777788888888887 6666 46667776643
No 73
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.85 E-value=2.9e-20 Score=170.72 Aligned_cols=155 Identities=28% Similarity=0.373 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHH
Q 009321 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 402 (537)
Q Consensus 323 ~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~ 402 (537)
+.|.++.+.+.+|++++.++. .+. .. ...+..+...|.+||+||||||.|++. |+++++.+|.++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~ 66 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLK 66 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHh
Confidence 578899999999998887763 110 00 112345668999999999999999999 999999999987
Q ss_pred hhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCChh
Q 009321 403 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFS 482 (537)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~ 482 (537)
+... . .+..+...+..++.+|||... ....... . .....+..++.|..|+++|++||++|||+
T Consensus 67 ~~~~-------~-----~~~~~~~~l~~~~~vLGl~~~-~~~~~~~---~-~~~~~~~~~~~v~~Ll~~R~~aR~~Kdf~ 129 (156)
T cd07963 67 KEDI-------E-----KAAALAALLKALGGVLGLLQQ-DPEAFLQ---G-GTGEGGLSVAEIEALIAQRNQARKAKDWA 129 (156)
T ss_pred ccch-------H-----HHHHHHHHHHHHHhccCCCCC-CHHHHHh---c-cccccccCHHHHHHHHHHHHHHHHhcCHH
Confidence 5321 0 123345667778899998542 1111100 0 00001122456999999999999999999
Q ss_pred HhHHHHHHhHhCCCEEEecCCceEEEe
Q 009321 483 KSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 483 ~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
+||+||++|.++||.|+|+|+||+|++
T Consensus 130 ~AD~IRd~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 130 EADRIRDELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHHHHHHHHCCcEEEECCCCceeeC
Confidence 999999999999999999999999974
No 74
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.85 E-value=9.7e-21 Score=182.66 Aligned_cols=208 Identities=21% Similarity=0.203 Sum_probs=151.7
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009321 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i 122 (537)
.=|+|||||++||||+|++++.++++| ++++.++.+|||+|++.+ .....+.+.|.++|++||+
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wLGl 67 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWLGV 67 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999999 789999999999998753 1333466669999999999
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCccccccccc
Q 009321 123 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKA 202 (537)
Q Consensus 123 ~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~ 202 (537)
. +|..+++|+|++.+++++++|+++|++|.. +. .| .||.+
T Consensus 68 ~-~d~~~~qS~r~~~y~~~~~~Li~~G~aY~~-----------~~-------------~~------------~~~~i--- 107 (240)
T cd09287 68 K-WDEVVIASDRIELYYEYARKLIEMGGAYVH-----------PR-------------TG------------SKYRV--- 107 (240)
T ss_pred C-CCCccchhccHHHHHHHHHHHHHcCCcccC-----------cc-------------cC------------CcEEE---
Confidence 6 678889999999999999999999999950 00 01 13333
Q ss_pred ccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH---HhhccCCCCceEEEEeeeeeeC
Q 009321 203 AKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTNN 279 (537)
Q Consensus 203 ~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~---~~a~~~~~~~~~~~h~g~v~~~ 279 (537)
+|.+|++|+.. ....| ++..+-|.| |..+.+.| ..+++.. .+.+ .|...++.+
T Consensus 108 ---------------~ptY~la~vVD-D~~~g--IThViRg~d----~~~~t~~q~~l~~~Lg~~-~P~~-~H~pll~~~ 163 (240)
T cd09287 108 ---------------WPTLNFAVAVD-DHLLG--VTHVLRGKD----HIDNTEKQRYIYEYFGWE-YPET-IHWGRLKIE 163 (240)
T ss_pred ---------------EEccccceeee-ccccC--CCeEEechh----hhhCCHHHHHHHHHcCCC-CCcE-EeeeeecCC
Confidence 26677654321 11233 344444668 44444444 4555544 3555 688999889
Q ss_pred CccccccCCC---------------cccHHHHHH-HcCchhhHHHHhhc-CcCCCcccCHHHHHHHHH
Q 009321 280 NEKMSKSLGN---------------FFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD 330 (537)
Q Consensus 280 G~KMSKS~Gn---------------~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~ 330 (537)
|+||||+.+. ..++..+.+ ++.|++++-|+... --.++..++++.|....+
T Consensus 164 ~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 164 GGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred CCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 9999999842 135666554 69999999988775 334777899998876654
No 75
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.7e-17 Score=167.35 Aligned_cols=358 Identities=15% Similarity=0.089 Sum_probs=242.3
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHH-------------------------
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI------------------------- 91 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki------------------------- 91 (537)
.+++.+-.++|++..+.|+||.|+.+++-.+++..+..|++|+-++...|||..+
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~ 188 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLF 188 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHH
Confidence 4678888999999999999999999999999999999999999999999997321
Q ss_pred ------HHHHHH---------------cCC------ChHHHHHHHHHHHHHHHHHcCCCCCCCccchh-hhHHHHHHHHH
Q 009321 92 ------IRRAND---------------LGE------NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMIT 143 (537)
Q Consensus 92 ------~~~a~~---------------~g~------~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s-~~~~~~~~~~~ 143 (537)
-.-|.+ ++. -|+.+.+--+..+.+.+++|||. +|.++..| .+.+.+++..+
T Consensus 189 dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~-FD~y~gESqv~~e~~~~~~d 267 (567)
T KOG1195|consen 189 DVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVK-FDEYSGESQVSNEKMQEALD 267 (567)
T ss_pred HHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhcee-eeeccchHHHHHHHHHHHHH
Confidence 011111 011 14557777888899999999998 68888887 56677888888
Q ss_pred HHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhh
Q 009321 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (537)
Q Consensus 144 ~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~i 223 (537)
.+...|+.-..+|...++.+....-+ +..+-.-.+|.+.-+ .+|.
T Consensus 268 ~~rs~~l~~e~dG~~vidL~~~~~~~---~~~~V~ksdgttLYl------tRdi-------------------------- 312 (567)
T KOG1195|consen 268 LLRSANLTEEIDGTIVIDLSKIDKKA---GKAVVQKSDGTTLYL------TRDI-------------------------- 312 (567)
T ss_pred HHHhcCCcccCCCcEEEEecccCccc---ceEEEEcCCCceehH------HHHH--------------------------
Confidence 88888877777888998876432110 000000001211100 0011
Q ss_pred hHHHHHHhh--cCCCeeEEEe--cccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHH
Q 009321 224 ECSAMSAHY--LSSKFDIHGG--GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 224 ecs~~~~~~--~g~~~dih~~--G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~ 299 (537)
++...++ +...--|++. |.|. |..-..-+.++++.. |+.-.-|..|..+.| ||+++|+++.+.|++++
T Consensus 313 --aaal~Rl~~y~fdr~iYVvd~~Q~~---hf~~lf~ilk~mg~~-~a~~~qHV~~G~v~G--msTRkG~~~fl~dil~e 384 (567)
T KOG1195|consen 313 --AAALDRLEKYSFDRLIYVVDSQQKD---HFCQLFEILKKMGFD-WAKKLQHVNFGRVQG--MSTRKGKVVFLDDILEE 384 (567)
T ss_pred --HHHHHHHHhcCcceEEEEechHHHH---HHHHHHHHHHHhCch-hhhhcceeccccccc--ccccCCceeeHHHHHHH
Confidence 1111111 1112224443 2231 333333444555543 332224545555555 99999999999999862
Q ss_pred ----------------------------cCchhhHHHHhhcCcCCCcccCHHHHHHHHHHH-HHHHHHHHHHHHhcCccc
Q 009321 300 ----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDAV-FYIYQTLQDCEVALSPFQ 350 (537)
Q Consensus 300 ----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l-~~l~~~~~~~~~~l~~~~ 350 (537)
.+.-++..-.+.....++..|+|+.+-+....- -+|+|++.|+.++.++..
T Consensus 385 ~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~ 464 (567)
T KOG1195|consen 385 AREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFS 464 (567)
T ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhcc
Confidence 466677776666667788899999988777543 489999999999887654
Q ss_pred cCCC-----------CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCch-hhhHHHH
Q 009321 351 EHGK-----------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLI 418 (537)
Q Consensus 351 ~~~~-----------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~ 418 (537)
.... ..+.-..++..+..+++.+..+| +++.. .-+-.||+.++.++++++....+.... +..-+|+
T Consensus 465 ~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~-~~lV~YL~~La~a~s~~yk~l~V~d~~~eia~aRL 542 (567)
T KOG1195|consen 465 DVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEP-CTLVTYLFKLAHAVSSAYKILWVKDSPMEIALARL 542 (567)
T ss_pred ccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-Hhhcc-hhHHHHHHHHHHHHHhHHhheeecCCcHHHHHHHH
Confidence 2110 01122446778889999999999 89985 555556999999999999876654322 2235688
Q ss_pred HHHHHHHHHHHHHHhhcccCCC
Q 009321 419 ESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 419 ~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.+..++.++|.+.+.+|||.|-
T Consensus 543 ~Lf~AvRqVL~ngm~lLGitPv 564 (567)
T KOG1195|consen 543 LLFSAVRQVLNNGMRLLGITPV 564 (567)
T ss_pred HHHHHHHHHHHhHHHHhCCCcc
Confidence 8899999999999999999874
No 76
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.73 E-value=5.2e-17 Score=173.38 Aligned_cols=248 Identities=19% Similarity=0.204 Sum_probs=153.8
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++....++|- ++-.|+..|+|.|. ......+.+.+.++|++||+.++
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~d 68 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAKH-----TGGEFILRIEDTDL-------------ERNIEEAEEAILEGLKWLGISWD 68 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------ccCChHHHHHHHHHHHHCCCCCC
Confidence 5889999999999999888888873 45688999999875 12334588999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCC----CCcchhchh-hhcCCCcc
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RLSGQRLEN-NRAGERVA 186 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg----~ls~~~l~~-~~~g~~~~ 186 (537)
....++|++.+...+++++|+++|.|| .|||... .|.|. .++.....+ ...|....
T Consensus 69 e~~~~QS~r~~~y~~~~~~L~~~g~aY-----~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (470)
T TIGR00464 69 EGPYYQSQRLDIYKKYAKELLEEGLAY-----RCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPV 143 (470)
T ss_pred CCeeehhCCHHHHHHHHHHHHHcCCEE-----ecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCce
Confidence 466788999999999999999999999 7887652 22332 122211110 11122100
Q ss_pred ccccccCcccc-cccccccCCCCc--------cccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH
Q 009321 187 VDSRKRNPADF-ALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 187 ~~~~k~~~~df-~lwk~~~~g~~~--------w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~ 257 (537)
+. .| -|.+. ..|...-.|.+. +..-..+|.|.||++|... ....|.+..| -|.| |+.+.+.|
T Consensus 144 iR-~k-~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vd-D~~~~ithvI--rG~d----~~~~t~~~ 214 (470)
T TIGR00464 144 VR-FK-IPQEAVVSFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVD-DYLMKITHVI--RGED----HISNTPKQ 214 (470)
T ss_pred EE-EE-cCCCCceeEEecccceEEecCccCCCeEEEecCCCcccccHHHHH-HHhCCCCEEE--ECch----hhcCHHHH
Confidence 00 00 00000 011110011111 1112246789999876542 2234544444 7789 55554444
Q ss_pred ---HhhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHHH-cCc------------------------hhhHHH
Q 009321 258 ---SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHP------------------------LALRHF 308 (537)
Q Consensus 258 ---~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~-~~~------------------------d~lR~~ 308 (537)
..+++. +.+++ .|..++. .+|.||||+.| .++++++++. |.| +++|+|
T Consensus 215 ~~l~~aLg~-~~p~~-~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f 291 (470)
T TIGR00464 215 ILIYQALGW-KIPVF-AHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIF 291 (470)
T ss_pred HHHHHHcCC-CCCeE-EEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhc
Confidence 355553 33445 7777743 48999999999 6899999885 344 445555
Q ss_pred HhhcCcCCCcccCHHHHHHH
Q 009321 309 LISAHYRSPLNYSVLQLDSA 328 (537)
Q Consensus 309 ll~~~~~~~~~fs~~~l~~~ 328 (537)
.++....+++.|+++.+.-.
T Consensus 292 ~l~~~~~~~~~fd~~kL~~~ 311 (470)
T TIGR00464 292 SLNRVSKSPAKFDWKKLQWL 311 (470)
T ss_pred CcccCCCCCCeecHHHHHHH
Confidence 55555557777777775433
No 77
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.72 E-value=4.1e-17 Score=171.18 Aligned_cols=247 Identities=19% Similarity=0.189 Sum_probs=157.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++...+++| .++..|+..|+|.|. ....+.+.+.+.++|++|||. +
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar-----~~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~-~ 68 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYAR-----KHGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGIN-W 68 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH-----HhCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCC-C
Confidence 589999999999999976655555 578899999999984 122356899999999999999 5
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCC----CCcchhchh-hhcCCCcc
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RLSGQRLEN-NRAGERVA 186 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg----~ls~~~l~~-~~~g~~~~ 186 (537)
|...+.|+.++.+.+++++|+++|++| .|||... .|.|. .++...... ...|....
T Consensus 69 De~y~QSer~~~y~~~~e~L~e~G~AY-----~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (445)
T PRK12558 69 DRTFRQSDRFDRYDEAAEKLKAAGRLY-----PCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPH 143 (445)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCEE-----EecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCce
Confidence 778889998999999999999999999 7777653 12232 122211111 11122110
Q ss_pred ccccccCcccccccccccCCCCc--------cccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH
Q 009321 187 VDSRKRNPADFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258 (537)
Q Consensus 187 ~~~~k~~~~df~lwk~~~~g~~~--------w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~ 258 (537)
+. .+- +..-..|...-.|.+. +..-..+|.|.+|++|..- ....| ++-.+-|.| |..|.+.|.
T Consensus 144 iR-~k~-~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVD-D~~m~--ITHViRG~d----~l~~t~~q~ 214 (445)
T PRK12558 144 WR-FKL-DDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTLPSVVD-DIDMG--ITHIIRGED----HVTNTAVQI 214 (445)
T ss_pred EE-Eec-CCCceEEEEEeeeEeecccccCCCeEEEecCCCccccccceec-cccCC--CCEEEechh----hhhCCHHHH
Confidence 00 000 0000111111111111 1111245789999876421 22233 333334557 666766665
Q ss_pred ---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHH-HcCchhhHHHHhhc--CcCCCcccCHHHHHHH
Q 009321 259 ---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDSA 328 (537)
Q Consensus 259 ---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~~ 328 (537)
.|++. +.+.| .|..+++. +|+|+||+.|. +++.++.+ +|.|++++-|++.- ++...--||.+.+.+.
T Consensus 215 ~l~~alg~-~~P~f-~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~ 288 (445)
T PRK12558 215 QIFEALGA-KPPVF-AHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAES 288 (445)
T ss_pred HHHHHhCC-CCCeE-EEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHh
Confidence 45543 34545 88888887 88999999987 68888876 69999999998875 3333334688877654
No 78
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.72 E-value=9e-17 Score=167.83 Aligned_cols=245 Identities=18% Similarity=0.197 Sum_probs=154.6
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.|+..|+|.|. ......+.+.+.++|++||+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~-----~gG~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WlGl~w- 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ-----QNEDFLIRIEDTDK-------------ERNIEGKDKEILEILNLFGISW- 65 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CcCChHHHHHHHHHHHHcCCCC-
Confidence 5899999999999999888888774 56788999999885 1233458899999999999995
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCC----CCcchhchhhhcCCCccc
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RLSGQRLENNRAGERVAV 187 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg----~ls~~~l~~~~~g~~~~~ 187 (537)
|...++|++.+...+++++|+++|.|| .|||... -+.|. .++.... +..|....+
T Consensus 66 De~y~QSeR~~~Y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~--~~~g~~~~i 138 (433)
T PRK12410 66 DKLVYQSENLKFHRQMAEKLLSEKKAF-----ACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV--LNCNKPFVV 138 (433)
T ss_pred CCCeehhccHHHHHHHHHHHHHcCCee-----eecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH--HhcCCCeEE
Confidence 666789999999999999999999999 7777652 11221 1221111 111211000
Q ss_pred cccccCcccccccccccCCCCc--------cccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH-
Q 009321 188 DSRKRNPADFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS- 258 (537)
Q Consensus 188 ~~~k~~~~df~lwk~~~~g~~~--------w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~- 258 (537)
. .| .|.....|.-.-.|.+. |..-...|.|.+|++|+.- ....|.+.. +-|.| |..|.+.|.
T Consensus 139 R-~k-~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVD-D~~mgIThV--iRG~d----~l~~tp~Qi~ 209 (433)
T PRK12410 139 R-LK-KPNHTMSFTDAIKGEVSFEPDEIDSFVILRADKTPTYNFACAVD-DMLYDISLI--IRGED----HVSNTPKQIL 209 (433)
T ss_pred E-EE-cCCCceeeeeccceeEEeccccCCCeEEEcCCCCccccccchhc-hhhcCCCEE--Eechh----hhhCcHHHHH
Confidence 0 00 00000011100001111 1112236789999876432 233443333 34558 777776664
Q ss_pred --hhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcC-CCcccCHHHHHH
Q 009321 259 --CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR-SPLNYSVLQLDS 327 (537)
Q Consensus 259 --~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~-~~~~fs~~~l~~ 327 (537)
+|++.++|+.+ .|..+++. +|+||||+.|. .++.++.+ +|.|++++-|++...+. ..--|+.+.+.+
T Consensus 210 Ly~aLg~~~pp~f-~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~ 281 (433)
T PRK12410 210 IREALGYNKEITY-AHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIE 281 (433)
T ss_pred HHHHcCCCCCCeE-EEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHH
Confidence 55555544444 88887655 99999999997 68888876 69999999998875332 122355555543
No 79
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.71 E-value=3.1e-16 Score=166.36 Aligned_cols=244 Identities=17% Similarity=0.136 Sum_probs=157.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++....++|- +.-.|+..|+|.|. ......+.+.+.++|++||+.++
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~~~~~~i~~~L~WLGl~wD 71 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFARH-----HNGKFLLRIEDTDK-------------ERSTKEAVEAIFSGLKWLGLDWN 71 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEECCCCc-------------cccChHHHHHHHHHHHHcCCCCC
Confidence 5889999999999999888888883 45678888998874 22334589999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCCC----CcchhchhhhcCCCccc
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGR----LSGQRLENNRAGERVAV 187 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg~----ls~~~l~~~~~g~~~~~ 187 (537)
....++|++.+...+.+++|+++|.|| .|||... .|.|.. ++.. ....|....+
T Consensus 72 e~py~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~---~~~~~~~~~i 143 (513)
T PRK14895 72 GEVIFQSKRNNLYKEAALKLLQNGKAY-----YCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPS---IYPTDIKPVI 143 (513)
T ss_pred CCceeEeCcHHHHHHHHHHHHHcCCeE-----EecCcHHHHHHHHHhhhccCCCCCCChhhcccChh---hhhcCCCeeE
Confidence 456788999999999999999999999 7887653 122211 1110 0001110000
Q ss_pred cccccCccc-ccccccccCCCCccc--------cCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH
Q 009321 188 DSRKRNPAD-FALWKAAKAGEPSWD--------SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258 (537)
Q Consensus 188 ~~~k~~~~d-f~lwk~~~~g~~~w~--------~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~ 258 (537)
. .| .|.+ -..|...-.|.++++ .-..+|.|.||..+.. -....|.+..| -|.| |..+.+.|.
T Consensus 144 R-~k-~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vV-DD~~m~ithVI--RG~d----~~~~t~~q~ 214 (513)
T PRK14895 144 R-LK-TPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVV-DDHDMGITHII--RGDD----HLTNAARQL 214 (513)
T ss_pred E-EE-cCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHH-HHHhcCCCEEE--ECch----HhhhHHHHH
Confidence 0 00 0000 011111111222111 1134678999987543 23334544444 7779 777766665
Q ss_pred ---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHH-HcCchhhHHHHhhc--CcCCCcccCHHHHHH
Q 009321 259 ---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDS 327 (537)
Q Consensus 259 ---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~ 327 (537)
.+++ ...+.+ .|..+|+ .+|+||||+.|. +.+.++.+ +|.|++++-|++.- ++...-.||.+.+.+
T Consensus 215 ~l~~aLG-~~~p~~-~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 215 AIYQAFG-YAVPSM-THIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred HHHHHcC-CCCCeE-EEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 4444 334444 8999988 699999999998 57777776 69999999998854 233333477777654
No 80
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.71 E-value=1.3e-16 Score=171.13 Aligned_cols=252 Identities=22% Similarity=0.259 Sum_probs=164.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|+|||||||++++.+.++| .|+..++..+||.|.+ | -...|.+.|.++|++||+. +
T Consensus 99 aPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~---R----------~~~e~~~~I~edL~wLGi~-~ 159 (560)
T TIGR00463 99 APNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR---R----------VKPEAYDMILEDLDWLGVK-G 159 (560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc---c----------ccHHHHHHHHHHHHHcCCC-C
Confidence 699999999999999999999987 5778999999999873 1 1224899999999999999 5
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC---------CC-CCCCCcch-hc---hhhhcCCC-------
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYGRLSGQ-RL---ENNRAGER------- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~---------~~-~yg~ls~~-~l---~~~~~g~~------- 184 (537)
|..+++|+|++.+.+++++|+++|+|| ++||... .| .|-.++.. .+ ++|..|..
T Consensus 160 d~~~~qSd~~~~y~~~a~~Li~~G~AY-----~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~l 234 (560)
T TIGR00463 160 DEVVYQSDRIEEYYDYCRKLIEMGKAY-----VCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVV 234 (560)
T ss_pred CccccccccHHHHHHHHHHHHHcCCce-----eecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 888999999999999999999999999 6666542 11 12223321 11 22333321
Q ss_pred -ccccc--cccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH---
Q 009321 185 -VAVDS--RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS--- 258 (537)
Q Consensus 185 -~~~~~--~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~--- 258 (537)
+..+. ....-+|+++++......+.--..| .+.|.++++|.. .....|.+..|. |.| |..+...|.
T Consensus 235 R~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~~V-DD~l~gITHviR--g~E----~~~nT~rq~yl~ 306 (560)
T TIGR00463 235 RAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSVPI-DDHLLGVTHVLR--GKD----HIDNERKQQYIY 306 (560)
T ss_pred EEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccceEe-ecccCCCCeEEe--chh----hhcCCHHHHHHH
Confidence 11111 1112257777775422111000011 146888877642 122334333333 557 454444443
Q ss_pred hhccCCCCceEEEEeeeeeeC-CccccccCC-------C--------cccHHHHHH-HcCchhhHHHHhhc-CcCCCccc
Q 009321 259 CAACQDSNVSYWMHNGHVTNN-NEKMSKSLG-------N--------FFTIRQITE-RYHPLALRHFLISA-HYRSPLNY 320 (537)
Q Consensus 259 ~a~~~~~~~~~~~h~g~v~~~-G~KMSKS~G-------n--------~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~f 320 (537)
.+++. ..+.+ .|.+++.++ |.|+|||+. . ..|++.+.. ++.|++||-|++.. .-..+..+
T Consensus 307 ~~lg~-~~P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i 384 (560)
T TIGR00463 307 MYFGW-ELPEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNL 384 (560)
T ss_pred HHcCC-CCCeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCcee
Confidence 33333 34555 889999985 569998763 1 124555544 69999999999987 44577889
Q ss_pred CHHHHHHHHHH
Q 009321 321 SVLQLDSASDA 331 (537)
Q Consensus 321 s~~~l~~~~~~ 331 (537)
+|+.|.+..+.
T Consensus 385 ~~~~l~~~nr~ 395 (560)
T TIGR00463 385 SWKNIYAFNKK 395 (560)
T ss_pred eHHHHHHHHHH
Confidence 99999876654
No 81
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=3e-16 Score=167.64 Aligned_cols=231 Identities=21% Similarity=0.250 Sum_probs=145.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|++++...++|- +.-.|+..|+|.|. ......+.+.+.++|++|||.++
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar~-----~~G~fiLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~D 71 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFARH-----HGGKFILRIEDTDQ-------------ERSTEEAEEAILEGLKWLGLDWD 71 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHCCCCCC
Confidence 4889999999999999888888874 45689999999875 22345588999999999999964
Q ss_pred CC-------ccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCC----CCcchhch-hh
Q 009321 126 TY-------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RLSGQRLE-NN 179 (537)
Q Consensus 126 ~~-------~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg----~ls~~~l~-~~ 179 (537)
.. -.++|++.+...+++++|+++|+|| .|||... .|.|. .++..... .+
T Consensus 72 e~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY-----~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~ 146 (476)
T PRK01406 72 EGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAY-----YCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARL 146 (476)
T ss_pred CCCccCCCCceehhcCHHHHHHHHHHHHHcCCee-----ecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Confidence 33 3688999999999999999999999 7777652 12232 12221111 11
Q ss_pred hcCCCccccccccCccc-ccccccccCCCCc--------cccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcc
Q 009321 180 RAGERVAVDSRKRNPAD-FALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH 250 (537)
Q Consensus 180 ~~g~~~~~~~~k~~~~d-f~lwk~~~~g~~~--------w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH 250 (537)
..|....+.- | .|.+ -..|.-.-.|.+. +..-...|.|.||..+. +....+|.+..| -|.| |
T Consensus 147 ~~g~~~~iR~-k-~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~v-VdD~~~~ithvI--rG~d----~ 217 (476)
T PRK01406 147 AAGEPPVIRF-K-VPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVV-VDDHLMGITHVI--RGED----H 217 (476)
T ss_pred hCCCCeeEEE-E-cCCCCceEEEEeccceEEeccccCCCcEEEecCCCccccchHH-HHHHHcCCCEEE--ECch----h
Confidence 1232100000 0 0000 0011100011111 11112467889987654 234456655555 7779 6
Q ss_pred hhHHHHHH---hhccCCCCceEEEEeeee-eeCCccccccCCCcccHHHHHHH-cCchhhHHHHhh
Q 009321 251 HENEIAQS---CAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLIS 311 (537)
Q Consensus 251 ~~~~~a~~---~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~ 311 (537)
+.+.+.|. .+++.. .+++ .|..++ ..+|+||||+.| .++++++++. |.|.++.-|++.
T Consensus 218 ~~~t~~q~~l~~alG~~-~p~~-~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 218 LSNTPKQILLYEALGWE-VPVF-AHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred hcCHHHHHHHHHHhCCC-CCeE-EEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH
Confidence 66655554 455543 3444 787775 448999999999 6899999885 566655555543
No 82
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.68 E-value=4.2e-16 Score=165.43 Aligned_cols=252 Identities=16% Similarity=0.170 Sum_probs=165.8
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|+|||||||++++...++|. ++-.++.-++|.|. ......|.+.+.++|++||+.+
T Consensus 17 APsPtG~LHiGharaAlln~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~WLGl~w- 77 (523)
T PLN03233 17 PPEPSGYLHIGHAKAALLNDYYARR-----YKGRLILRFDDTNP-------------SKEKAEFEESIIEDLGKIEIKP- 77 (523)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCC-------------CccchHHHHHHHHHHHHhCCCC-
Confidence 5999999999999999999888884 45688899999875 2233459999999999999984
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC------C----CCCCCcchh----chhhhcCCC-------
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------P----NYGRLSGQR----LENNRAGER------- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~------~----~yg~ls~~~----l~~~~~g~~------- 184 (537)
|..+++|++.+.+.++..+|+++|.|| ++||.... + .|-.++... .++++.|..
T Consensus 78 D~~~~qSdr~~~y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~l 152 (523)
T PLN03233 78 DSVSFTSDYFEPIRCYAIILIEEGLAY-----MDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCL 152 (523)
T ss_pred CCCccccccHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEE
Confidence 677889999999999999999999999 77776531 0 122222211 122332211
Q ss_pred ---ccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH---H
Q 009321 185 ---VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---S 258 (537)
Q Consensus 185 ---~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~---~ 258 (537)
++......+-.|+++++....-.+--...| .+.|.++++|.. .....|.+ -..-|.| |..+.+.| .
T Consensus 153 R~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~~V-DD~l~gIT--HviRg~E----~~~~t~~q~~l~ 224 (523)
T PLN03233 153 RAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLACPI-VDSIEGVT--HALRTTE----YDDRDAQFFWIQ 224 (523)
T ss_pred EEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCceee-eccccCCC--eEEechh----hhcCCHHHHHHH
Confidence 111111112258888776432112112234 567888876532 12223322 2233457 44444433 3
Q ss_pred hhccCCCCceEEEEeeeeeeCCccccccC------CCcc---------cHHHHHH-HcCchhhHHHHhhc-CcCCCcccC
Q 009321 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYS 321 (537)
Q Consensus 259 ~a~~~~~~~~~~~h~g~v~~~G~KMSKS~------Gn~i---------~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs 321 (537)
.+++.. .+.+ .|-+.+.+.|.|||||+ .+.| |++.+.. +|.|++||-|++.. .-..+..++
T Consensus 225 ~aLg~~-~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~ 302 (523)
T PLN03233 225 KALGLR-RPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLD 302 (523)
T ss_pred HHhCCC-CCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceec
Confidence 555443 3445 55677778999999997 2344 5777765 69999999999986 556777899
Q ss_pred HHHHHHHHHH
Q 009321 322 VLQLDSASDA 331 (537)
Q Consensus 322 ~~~l~~~~~~ 331 (537)
++.|.+..+.
T Consensus 303 ~~~l~~~nR~ 312 (523)
T PLN03233 303 WAKFWAENKK 312 (523)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 83
>PLN02627 glutamyl-tRNA synthetase
Probab=99.66 E-value=9.5e-16 Score=162.87 Aligned_cols=244 Identities=19% Similarity=0.206 Sum_probs=158.3
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
++|+.=+ .|+|+|++||||+|++++...++| .++-.|+..|+|.|. ......+.+.+.++|
T Consensus 44 ~~vr~RF-APSPTG~LHiG~aRtAL~n~l~Ar-----~~gG~fiLRIEDTD~-------------~R~~~e~~~~I~~~L 104 (535)
T PLN02627 44 GPVRVRF-APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDL-------------ARSTKESEEAVLRDL 104 (535)
T ss_pred CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----HhCCEEEEEeCcCCC-------------CCCChHHHHHHHHHH
Confidence 3444444 489999999999999988888877 355789999999874 223345899999999
Q ss_pred HHcCCCCCCC--------ccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCC----CC
Q 009321 118 ADLQCLPPTY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RL 171 (537)
Q Consensus 118 ~~L~i~~~~~--------~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg----~l 171 (537)
++|||.++.. -.++|++.+...+++++|+++|.|| .|||... .+.|. .+
T Consensus 105 ~WLGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l 179 (535)
T PLN02627 105 KWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVY-----PCFCTDEELEAMKEEAELKKLPPRYTGKWATA 179 (535)
T ss_pred HHcCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCee-----eccCChHHHHHHHHHHHhcCCCcCCCCccccC
Confidence 9999986422 2578899999999999999999999 7787653 12222 23
Q ss_pred cchhchh-hhcCCC--ccccccc------------------cCcccccccccccCCCCccccCCCCCCCchhhhHHHHHH
Q 009321 172 SGQRLEN-NRAGER--VAVDSRK------------------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSA 230 (537)
Q Consensus 172 s~~~l~~-~~~g~~--~~~~~~k------------------~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~ 230 (537)
+.....+ +..|.. +.+.... ..-.||+++| .+|.|.||++|+.. .
T Consensus 180 ~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R-------------~DG~PtY~fA~vVD-D 245 (535)
T PLN02627 180 SDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLR-------------SNGQPVYNFCVAVD-D 245 (535)
T ss_pred CHHHHHHHHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEe-------------cCCCccccccceec-c
Confidence 2221111 111221 0000000 0012333333 36789999876432 2
Q ss_pred hhcCCCeeEEEecccCcCcchhHHHHHH---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHH-HcCchhh
Q 009321 231 HYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLAL 305 (537)
Q Consensus 231 ~~~g~~~dih~~G~Dl~fpH~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~l 305 (537)
...|.+ -.+-|.| |..|.+.|. .|++..+ +.| .|..+++. +|+||||+.|. +++.++.+ +|.|+++
T Consensus 246 ~~mgIT--HViRG~D----~l~nTpkQi~ly~aLg~~~-P~f-~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi 316 (535)
T PLN02627 246 ATMGIT--HVIRAEE----HLPNTLRQALIYKALGFPM-PRF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAM 316 (535)
T ss_pred cccCCc--EEEechh----hhcChHHHHHHHHHcCCCC-CeE-EEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHH
Confidence 223333 3333557 777777665 4554444 444 88888876 88999999887 68888876 6999999
Q ss_pred HHHHhhcCcC---CCcccCHHHHHHH
Q 009321 306 RHFLISAHYR---SPLNYSVLQLDSA 328 (537)
Q Consensus 306 R~~ll~~~~~---~~~~fs~~~l~~~ 328 (537)
+-|++.-.+. ..--|+.+.+.+.
T Consensus 317 ~nyla~LGws~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 317 VNYLALLGWNDGTENEIFTLEELVEK 342 (535)
T ss_pred HHHHHHhCCCCCCCCCcCCHHHHHHh
Confidence 9998875443 2234777766543
No 84
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.66 E-value=1.5e-15 Score=146.23 Aligned_cols=174 Identities=22% Similarity=0.238 Sum_probs=127.3
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++....++|- ++-.++..|+|.|.+ .....|.+.+.++|++||+.++
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~wd 68 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARK-----YGGKFILRIEDTDPE-------------RSRPEYVESILEDLKWLGLDWD 68 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCCCC
Confidence 5899999999999999888888885 567899999998851 2233588999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccC
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~ 205 (537)
....++|++.+...+.+++|+++|
T Consensus 69 ~~~~~QS~r~~~y~~~~~~L~~~g-------------------------------------------------------- 92 (230)
T cd00418 69 EGPYRQSDRFDLYRAYAEELIKKG-------------------------------------------------------- 92 (230)
T ss_pred CCeeehhcCHHHHHHHHHHHHHcC--------------------------------------------------------
Confidence 436788999999999999999999
Q ss_pred CCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH---hhccCCCCceEEEEeeeeee-CCc
Q 009321 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNE 281 (537)
Q Consensus 206 g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~ 281 (537)
|.|.+|++|+. -....| ++-.+-|.| |..+.+.|. .+++. +.+.+ .|...++. +|+
T Consensus 93 -----------g~p~Y~la~vv-DD~~~g--IThViRG~D----~l~st~~q~~l~~~Lg~-~~P~~-~H~pll~~~~g~ 152 (230)
T cd00418 93 -----------GYPLYNFVHPV-DDALMG--ITHVLRGED----HLDNTPIQDWLYEALGW-EPPRF-YHFPRLLLEDGT 152 (230)
T ss_pred -----------CCccccccccc-cccccC--CCEEEECHh----hhhchHHHHHHHHHcCC-CCCeE-EEeeeeeCCCCC
Confidence 12223322211 011122 344455668 555555544 44544 44556 88888876 779
Q ss_pred cccccCCCcccHHHHHH-HcCchhhHHHHhhcCc
Q 009321 282 KMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY 314 (537)
Q Consensus 282 KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~ 314 (537)
|||||.|+ ++++++.+ ++.|++++-|+.....
T Consensus 153 KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 153 KLSKRKLN-TTLRALRRRGYLPEALRNYLALIGW 185 (230)
T ss_pred CccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCC
Confidence 99999998 78888766 5999999999886533
No 85
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.65 E-value=2.4e-15 Score=160.18 Aligned_cols=250 Identities=18% Similarity=0.124 Sum_probs=164.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|+|||||||++++...++|. ++-.++..++|.|.. .....|.+.+.++|++||+.++
T Consensus 35 aPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~wLGi~~d 96 (554)
T PRK05347 35 PPEPNGYLHIGHAKSICLNFGLAQD-----YGGKCNLRFDDTNPE-------------KEDQEYVDSIKEDVRWLGFDWS 96 (554)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCCC-------------cCChHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999999988884 556888899988752 2334699999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC--------------CCCCCCcchh-c---hhhhcCCC---
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNYGRLSGQR-L---ENNRAGER--- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~--------------~~yg~ls~~~-l---~~~~~g~~--- 184 (537)
+....+|++.+.+.+...+|+++|+|| ++||.... ..|-.++... + +++..|..
T Consensus 97 ~~~~~qS~r~~~~y~~a~~Li~~G~AY-----~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g 171 (554)
T PRK05347 97 GELRYASDYFDQLYEYAVELIKKGKAY-----VDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEG 171 (554)
T ss_pred CCceeeecCHHHHHHHHHHHHHcCCEe-----eCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCC
Confidence 667788999999999999999999999 77776520 0122222211 1 22344431
Q ss_pred --c---cccccccCc--ccccccccccCCCCccc-cCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcC---cchhH
Q 009321 185 --V---AVDSRKRNP--ADFALWKAAKAGEPSWD-SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---PHHEN 253 (537)
Q Consensus 185 --~---~~~~~k~~~--~df~lwk~~~~g~~~w~-~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~f---pH~~~ 253 (537)
+ ..+..-.++ +|+++.+......+ .. ..| .+.|.++.+|. +|=|..|+.|+. -|..+
T Consensus 172 ~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~-r~G~k~-~iyPtYdfA~~----------vdD~l~gITHvlRg~E~~~~ 239 (554)
T PRK05347 172 SAVLRAKIDMASPNINMRDPVLYRIRHAHHH-RTGDKW-CIYPMYDFAHC----------ISDAIEGITHSLCTLEFEDH 239 (554)
T ss_pred cEEEEEEeeccCCCCCCCCCEEEEecCCCCC-ccCCce-eeecCcCccce----------eeccccCCceEEeccccccC
Confidence 0 111111222 57777765321111 00 011 13788887663 333333333332 15555
Q ss_pred HHHH---HhhccCCCCceEEEEeeeeeeCCccccccCCC-------c--------ccHHHHHH-HcCchhhHHHHhhc-C
Q 009321 254 EIAQ---SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN-------F--------FTIRQITE-RYHPLALRHFLISA-H 313 (537)
Q Consensus 254 ~~a~---~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn-------~--------i~~~dll~-~~~~d~lR~~ll~~-~ 313 (537)
.+.| ..+++....+.. .+.+++.++|.|||||++. + .|+..+.+ +|.|+|||-|++.. -
T Consensus 240 t~~~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~ 318 (554)
T PRK05347 240 RPLYDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGV 318 (554)
T ss_pred hHHHHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCC
Confidence 5544 455654433444 3457888899999999964 2 26777776 69999999999986 4
Q ss_pred cCCCcccCHHHHHHHHHH
Q 009321 314 YRSPLNYSVLQLDSASDA 331 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~ 331 (537)
-..+..++++.|.+..+.
T Consensus 319 s~~~~~i~~~~L~~~nRk 336 (554)
T PRK05347 319 TKQDSVIDMSMLESCIRE 336 (554)
T ss_pred CCCCCeecHHHHHHHHHH
Confidence 456778999999877654
No 86
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.63 E-value=1.8e-15 Score=151.21 Aligned_cols=216 Identities=17% Similarity=0.097 Sum_probs=140.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++....++|. ++-.++.-|+|.|.. .....|.+.+.++|++|||.++
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar~-----~~G~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wlGl~wD 72 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDARA-----HGGRWLLRIEDIDPP-------------REVPGAADAILADLEWLGLHWD 72 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEECcCCCC-------------ccchHHHHHHHHHHHHCCCCCC
Confidence 6899999999999999887777773 557889999998751 2234588999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC------------CCCC----CCcchhchhhhcCCCcccc-
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------PNYG----RLSGQRLENNRAGERVAVD- 188 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~------------~~yg----~ls~~~l~~~~~g~~~~~~- 188 (537)
....++|++.+...+++++|+++|.+| .+||..+. +.|. .++...... .--|+..+
T Consensus 73 e~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~--~~iRlk~~~ 145 (299)
T PRK05710 73 GPVLYQSQRHDAYRAALDRLRAQGLVY-----PCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNP--PAWRLRVPD 145 (299)
T ss_pred CCceEeeccHHHHHHHHHHHHHCCCce-----ecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCC--ceEEEEcCC
Confidence 446678999999999999999999999 66665421 1111 111100000 00000000
Q ss_pred ---------------ccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhH
Q 009321 189 ---------------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (537)
Q Consensus 189 ---------------~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~ 253 (537)
.....-.||++++. .|.|.+|++|... ....|.+.. +-|.| |..+
T Consensus 146 ~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~-------------dg~ptY~lA~vVD-D~~~gIThV--vRG~D----~l~~ 205 (299)
T PRK05710 146 AVIAFDDRLQGRQHQDLALAVGDFVLRRA-------------DGLFAYQLAVVVD-DALQGVTHV--VRGAD----LLDS 205 (299)
T ss_pred CceEEEEecceeEeeCCCCCCCCEEEEec-------------CCCccccchhHHh-cccCCCCEE--EeChh----hhhc
Confidence 00001134444443 5788999876532 334454433 34568 6656
Q ss_pred HHHHH---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 254 EIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 254 ~~a~~---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
.+.|. .+++.. .+.| .|...++ .+|+|||||.|. ..+.+ ..+.|+ +..++..-
T Consensus 206 t~~Q~~l~~aLg~~-~P~y-~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 206 TPRQIYLQQLLGLP-TPRY-LHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred CHHHHHHHHHcCCC-CCeE-EEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHc
Confidence 55554 445444 4555 8888775 499999999887 46666 788888 66665554
No 87
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.62 E-value=2.1e-15 Score=149.11 Aligned_cols=230 Identities=16% Similarity=0.045 Sum_probs=140.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|++++...++|- ++-.|+.-|+|.|.. .....+.+.+.++|++|||.++
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~-----~gG~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wLGl~wD 67 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA-----HGGRWLVRIEDLDPP-------------REVPGAADDILRTLEAYGLHWD 67 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCCCC
Confidence 5899999999999999999888883 457888899998851 2233588999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC---------CCCCCCCcchhchhhhcCCC--ccccccc---
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SPNYGRLSGQRLENNRAGER--VAVDSRK--- 191 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~---------~~~yg~ls~~~l~~~~~g~~--~~~~~~k--- 191 (537)
....++|++++...+++++|+++|.|| ++||..+ .+.|..-..... ....|.. +.+....
T Consensus 68 e~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~Ct~eel~~~~~~~~~~y~~~cr~~~-~~~~~~~~~~Rlk~~~~~~ 141 (272)
T TIGR03838 68 GEVVYQSQRHALYQAALDRLLAAGLAY-----PCQCTRKEIAAAAGDGGGIYPGTCRNGL-LGRPARPAAWRLRVPDGVI 141 (272)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHcCCEE-----ecCCCHHHHHHHhcCCCCCCCchhhccc-ccccCCCceEEEecCCCCc
Confidence 344588999999999999999999999 7776542 112211000000 0001110 0000000
Q ss_pred ---------------cCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHH
Q 009321 192 ---------------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (537)
Q Consensus 192 ---------------~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a 256 (537)
..-.||+++ ...|.|.+|++|+.. ....|.+ -.+-|.| |..+.+.
T Consensus 142 ~~~D~~~g~~~~~~~~~~~D~vi~-------------R~Dg~ptY~fA~vVD-D~~~gIT--hViRG~D----~l~~t~~ 201 (272)
T TIGR03838 142 AFDDRLQGPQQQDLAAAVGDFVLR-------------RADGLFAYQLAVVVD-DAAQGIT--HVVRGAD----LLDSTPR 201 (272)
T ss_pred eEEEeeeeEEEecCcccCCCEEEE-------------ecCCCccccChhhhh-cccCCCC--EEEeCHh----hhhccHH
Confidence 000223332 246789999876532 3344433 3344558 6666665
Q ss_pred HH---hhccCCCCceEEEEeeee-eeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc--CcC-CCcccCHHHH
Q 009321 257 QS---CAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA--HYR-SPLNYSVLQL 325 (537)
Q Consensus 257 ~~---~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~--~~~-~~~~fs~~~l 325 (537)
|. .+++..+ +.| .|.+.+ ..+|+|+|||.|- .+++++ -.+.++..++... .+. ..-.||.+.+
T Consensus 202 q~~l~~aLg~~~-P~y-~H~pll~~~~g~kLSKR~~~-~~i~~~---~~~~~~~~~l~~lG~~~~~~~~~~~~~~~ 271 (272)
T TIGR03838 202 QIYLQRLLGLPP-PRY-LHLPLVVNADGEKLSKQNGA-PALDLS---HPLPALLAALRFLGLPPPPELAAASPAEL 271 (272)
T ss_pred HHHHHHHhCCCC-CeE-EechhhhCCCCCeeeccCCc-cchhcC---CcHHHHHHHHHHcCCCCCcccccCCHHHh
Confidence 54 4555444 444 888887 4599999999887 344442 1233555554443 222 2234565543
No 88
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.61 E-value=1.4e-14 Score=160.76 Aligned_cols=251 Identities=18% Similarity=0.082 Sum_probs=166.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. ++-.++..+||.|.. .....|.+.+.++|++||+.++
T Consensus 37 aPsPtG~lHiGhar~alln~~~A~~-----~~G~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~wLG~~wd 98 (771)
T PRK14703 37 PPEPNGYLHIGHAKSILLNFGIARD-----YGGRCHLRMDDTNPE-------------TEDTEYVEAIKDDVRWLGFDWG 98 (771)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCCCCCC-------------cCChHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999998888884 456888999998752 2334599999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCCCCcchh-c---hhhhcCCC---
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQR-L---ENNRAGER--- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg~ls~~~-l---~~~~~g~~--- 184 (537)
.....+|++.+.+.++..+|+++|.|| ++||... .+.|-.++... + +.+..|..
T Consensus 99 ~~~~~qS~~~~~y~~~a~~Li~~G~aY-----~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g 173 (771)
T PRK14703 99 EHLYYASDYFERMYAYAEQLIKMGLAY-----VDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDG 173 (771)
T ss_pred CCceEeecCHHHHHHHHHHHHHcCCcc-----cCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCC
Confidence 556788999999999999999999999 7777642 01122232211 1 12333431
Q ss_pred --c---ccccccc--CcccccccccccCCCCccccCCCC---CCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHH
Q 009321 185 --V---AVDSRKR--NPADFALWKAAKAGEPSWDSPWGP---GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE 254 (537)
Q Consensus 185 --~---~~~~~k~--~~~df~lwk~~~~g~~~w~~~wG~---g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~ 254 (537)
+ ..+.... .-+|+++++......+ ..|. +.|.|+++|.. .....|.+.. .-|.| |..+.
T Consensus 174 ~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~----~~Gd~~~i~PtYdfa~~v-dD~l~gITHv--lRg~E----~~~~~ 242 (771)
T PRK14703 174 AHVLRAKIDMSSPNMKLRDPLLYRIRHAHHY----RTGDEWCIYPMYDFAHPL-EDAIEGVTHS--ICTLE----FENNR 242 (771)
T ss_pred CeEEEEEeeccCCcccCCCCEEEEEcCCCCC----CcCCCCCcCCCcccccee-eccccCCcEE--EecHh----hhhcc
Confidence 1 1111111 2258888875422112 1343 37888876532 1222332222 23446 44444
Q ss_pred HHH---HhhccCCCC-ceEEEEeeeeeeCCccccccC-------CCcc--------cHHHHHH-HcCchhhHHHHhhc-C
Q 009321 255 IAQ---SCAACQDSN-VSYWMHNGHVTNNNEKMSKSL-------GNFF--------TIRQITE-RYHPLALRHFLISA-H 313 (537)
Q Consensus 255 ~a~---~~a~~~~~~-~~~~~h~g~v~~~G~KMSKS~-------Gn~i--------~~~dll~-~~~~d~lR~~ll~~-~ 313 (537)
+.| ..++++.++ +.+ .+.+++.+.|.|||||+ |-+- |+..+.. +|.|++||-|++.. .
T Consensus 243 ~~~~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~ 321 (771)
T PRK14703 243 AIYDWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGV 321 (771)
T ss_pred HHHHHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCC
Confidence 443 456655433 555 45689999999999998 4431 5666665 69999999999986 4
Q ss_pred cCCCcccCHHHHHHHHHH
Q 009321 314 YRSPLNYSVLQLDSASDA 331 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~ 331 (537)
-..+..++++.|....+.
T Consensus 322 s~~~~~i~~~~L~~~~R~ 339 (771)
T PRK14703 322 AKTNSTVDIGVLEFAIRD 339 (771)
T ss_pred CccCceecHHHHHHHHHH
Confidence 456778999999877654
No 89
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.3e-15 Score=156.23 Aligned_cols=246 Identities=22% Similarity=0.221 Sum_probs=150.6
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||||+++.-..++|. +.-.|+..|+|.|. +.-...+.+.+.++|++||+.++
T Consensus 15 APsPtG~LHiG~artAl~N~~~Ar~-----~~G~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WLGl~wd 76 (472)
T COG0008 15 APSPTGYLHIGHARTALLNYLYARK-----YGGKFILRIEDTDP-------------ERETPEAEDAILEDLEWLGLDWD 76 (472)
T ss_pred CcCCCCccchHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CCCCHHHHHHHHHHHHhcCCCCC
Confidence 5999999999999999888888874 55788889999875 22233588999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CC-CCCC----Ccchhchhhhc-CC--
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP-NYGR----LSGQRLENNRA-GE-- 183 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~-~yg~----ls~~~l~~~~~-g~-- 183 (537)
....++|++.+...+++++|+++|.|| ++||..+ -| .|.. |+.. +.+.. |.
T Consensus 77 e~~~~QS~r~~~Y~~~~~~Li~~G~AY-----~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~--~~~~~~~~~~ 149 (472)
T COG0008 77 EGPYYQSERFDIYYEYAEKLIEKGKAY-----VCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLF--EKMADLGEGG 149 (472)
T ss_pred CceeehhhhHHHHHHHHHHHHHCCCeE-----EecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchH--HHHhhcccCC
Confidence 446889999999999999999999999 8888762 02 2221 1110 11111 11
Q ss_pred C--cccccc--ccCc--ccccccccccCCCCccc--cCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHH
Q 009321 184 R--VAVDSR--KRNP--ADFALWKAAKAGEPSWD--SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (537)
Q Consensus 184 ~--~~~~~~--k~~~--~df~lwk~~~~g~~~w~--~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~ 255 (537)
. +.+... ..++ .|.+.-.-.-... .++ ..--.|.|.++++|. +.....|.+..|. |.| |..|.+
T Consensus 150 ~~viR~k~~~~~~~~~~~D~v~g~i~~~~~-~~~dv~~r~dg~ptY~favv-vDD~~mgITHviR--G~d----~~~nt~ 221 (472)
T COG0008 150 PAVVRLKIPMAHPGPVFRDLVRGRIVFAPK-HPDFVILRYDGYPTYNFAVV-VDDHLMGITHVLR--GED----HLDNTP 221 (472)
T ss_pred CeEEEEeCCCCCCCCccccceeeeEecCcc-CCcceeecCCCCcccceeee-echhhcCCceEEe--chh----hccCCH
Confidence 0 111000 0111 1211111000000 011 112245677776542 2233455444444 558 666766
Q ss_pred HHH---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHH-HHcCchhhHHHHhhc--Cc--CCCcccCHHHHH
Q 009321 256 AQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT-ERYHPLALRHFLISA--HY--RSPLNYSVLQLD 326 (537)
Q Consensus 256 a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll-~~~~~d~lR~~ll~~--~~--~~~~~fs~~~l~ 326 (537)
-|. .+++. +++.+ .|.+.++. +|+|||||+| .+.+.++. .+|.+.+++.++... .+ ...-.|+.+.+.
T Consensus 222 ~q~~l~~~lg~-~~P~~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~ 298 (472)
T COG0008 222 RQIWLYEALGW-PPPVY-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGI 298 (472)
T ss_pred HHHHHHHHcCC-CCCcE-EEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 665 44444 44556 78899888 6679999999 67777644 468888888777543 22 223345555544
Q ss_pred H
Q 009321 327 S 327 (537)
Q Consensus 327 ~ 327 (537)
.
T Consensus 299 ~ 299 (472)
T COG0008 299 K 299 (472)
T ss_pred h
Confidence 3
No 90
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.60 E-value=1.5e-14 Score=139.32 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=143.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. ++-.++..|+|.|.. .....+.+.+.++|++||+.+
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~w- 67 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKK-----YGGRCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWLGIKP- 67 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCCc-------------ccchHHHHHHHHHHHHcCCCC-
Confidence 5899999999999999988888875 456888899998752 234458899999999999985
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccC
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~ 205 (537)
|...++|++.+...+.+++|+++|.+|.. + ..| .++.+
T Consensus 68 D~~~~QS~r~~~Y~~~~~~L~~~g~aY~~-------------~-----------~~~------------~~~~i------ 105 (238)
T cd00807 68 YKVTYASDYFDQLYEYAEQLIKKGKAYVH-------------H-----------RTG------------DKWCI------ 105 (238)
T ss_pred CCceecccCHHHHHHHHHHHHHcCCeecC-------------C-----------CCC------------CCEEE------
Confidence 56678899999999999999999999960 0 001 01211
Q ss_pred CCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH---hhccCCCCceEEEEeeeeeeCCcc
Q 009321 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEK 282 (537)
Q Consensus 206 g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~---~a~~~~~~~~~~~h~g~v~~~G~K 282 (537)
+|.++++|... ....| ++-.+-|.| |..+.+.|. .+++..+ +.+ +|.+++..+|.|
T Consensus 106 ------------~ptY~lA~vVD-D~~~g--IThVvRG~D----~l~~t~~Q~~l~~aLg~~~-P~~-~~~~hln~~g~k 164 (238)
T cd00807 106 ------------YPTYDFAHPIV-DSIEG--ITHSLCTLE----FEDRRPSYYWLCDALRLYR-PHQ-WEFSRLNLTYTV 164 (238)
T ss_pred ------------EeccccceEee-ccccC--CCeEEechh----hhcCCHHHHHHHHHcCCCC-Cce-eEEEEECCCCCC
Confidence 36666654321 12233 334444568 555555554 4555443 444 455778889999
Q ss_pred ccccCCC------c---------ccHHHHHH-HcCchhhHHHHhhc-CcCCCcccCHHHHHHHHH
Q 009321 283 MSKSLGN------F---------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD 330 (537)
Q Consensus 283 MSKS~Gn------~---------i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~ 330 (537)
|||+.+. . .++..+.. ++.|++++-|++.. --.++..|+++.|....+
T Consensus 165 LSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 165 MSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred ccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 9999852 1 13444443 69999999999986 556888999999876554
No 91
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.60 E-value=1.9e-14 Score=154.40 Aligned_cols=253 Identities=17% Similarity=0.119 Sum_probs=160.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|+|||||||++++...++|. ++-.++..++|.|.. .....|.+.+.++|++||+.++
T Consensus 58 APsPtGyLHIGharaAllN~l~Ar~-----~gG~~iLRiEDTDp~-------------R~~~e~~d~IleDL~WLGl~wD 119 (601)
T PTZ00402 58 PPEASGFLHIGHAKAALINSMLADK-----YKGKLVFRFDDTNPS-------------KEKEHFEQAILDDLATLGVSWD 119 (601)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCCc-------------ccCHHHHHHHHHHHHHCCCCCC
Confidence 6999999999999999999888884 456888899998752 2344699999999999999854
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC---------C-CCCCCCcch-hc---hhhhcCC-----Cc-
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------S-PNYGRLSGQ-RL---ENNRAGE-----RV- 185 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~---------~-~~yg~ls~~-~l---~~~~~g~-----~~- 185 (537)
.....+|++.+.+.++.++|+++|+|| +++|... . ..|-.++.. .+ ..+..|. .+
T Consensus 120 e~~~~QSdr~d~y~e~a~~Li~~G~AY-----~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~l 194 (601)
T PTZ00402 120 VGPTYSSDYMDLMYEKAEELIKKGLAY-----CDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCL 194 (601)
T ss_pred CceeeccccHHHHHHHHHHHHHcCCEE-----EecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEE
Confidence 446678999999999999999999999 6666532 1 123223221 11 1122121 00
Q ss_pred ----cccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH---H
Q 009321 186 ----AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---S 258 (537)
Q Consensus 186 ----~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~---~ 258 (537)
+......+-+|+++++......+ ....--.+.|.|+++|.. .....|.+ -.+-|.| |..+.+.| .
T Consensus 195 R~kid~~~~n~~~rD~Vl~R~~~~~h~-rtGdk~dgyPtYdfA~vV-DD~l~gIT--HvlRg~E----~l~~tp~q~~L~ 266 (601)
T PTZ00402 195 RAKISVDNENKAMRDPVIYRVNLTPHA-RQGTKYKAYPTYDFCCPI-IDSVEGVT--HALRTNE----YHDRNDQYYWFC 266 (601)
T ss_pred EEecccCCCCCCccCCEEEEEcCCccc-ccCCCCceeeccCcceee-EccccCCc--eEeechh----hhhCcHHHHHHH
Confidence 01111112357777664321110 001112467888876532 11223322 2233446 44444443 3
Q ss_pred hhccCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHHHHH-HHcCchhhHHHHhhc-CcCCCcccC
Q 009321 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT-ERYHPLALRHFLISA-HYRSPLNYS 321 (537)
Q Consensus 259 ~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll-~~~~~d~lR~~ll~~-~~~~~~~fs 321 (537)
.+++.. .+.+ .|.+.+..+|.|||||++.- -|+.-|. .+|.|++||-||... --.++..|+
T Consensus 267 ~aLg~~-~P~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d 344 (601)
T PTZ00402 267 DALGIR-KPIV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFME 344 (601)
T ss_pred HHhCCC-CceE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccC
Confidence 455443 3445 77788888999999998852 1222222 369999999999987 556788999
Q ss_pred HHHHHHHHHH
Q 009321 322 VLQLDSASDA 331 (537)
Q Consensus 322 ~~~l~~~~~~ 331 (537)
++.|....+.
T Consensus 345 ~~~L~~~nr~ 354 (601)
T PTZ00402 345 WSKLWYFNTQ 354 (601)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 92
>PLN02907 glutamate-tRNA ligase
Probab=99.59 E-value=1.5e-14 Score=160.80 Aligned_cols=252 Identities=16% Similarity=0.143 Sum_probs=163.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||||++++...++|. ++-.++..+||.|. ......|.+.+.++|++||+.+
T Consensus 219 aPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~wLG~~~- 279 (722)
T PLN02907 219 PPEPSGYLHIGHAKAALLNQYFARR-----YKGKLIVRFDDTNP-------------SKESDEFVENILKDIETLGIKY- 279 (722)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CcCChHHHHHHHHHHHHcCCCC-
Confidence 6999999999999999999999983 45688889999875 2223469999999999999985
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC---------CC-CCCCCcchh----chhhhcCCC-------
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYGRLSGQR----LENNRAGER------- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~---------~~-~yg~ls~~~----l~~~~~g~~------- 184 (537)
|..+++|++.+.+.++..+|+++|.||. ++|... .+ .|-.++... .++|..|..
T Consensus 280 d~~~~qS~r~~~y~~~a~~Li~~G~aY~-----~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~l 354 (722)
T PLN02907 280 DAVTYTSDYFPQLMEMAEKLIKEGKAYV-----DDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCV 354 (722)
T ss_pred CCcccccccHHHHHHHHHHHHHcCCeee-----cCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 6778899999999999999999999994 443321 00 121222211 123333321
Q ss_pred -cccccccc--CcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH---
Q 009321 185 -VAVDSRKR--NPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS--- 258 (537)
Q Consensus 185 -~~~~~~k~--~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~--- 258 (537)
..++.... .-+|+++.+......+..-..| .+.|.++++|.. .....|.+. ..-|.| |..+.+.|.
T Consensus 355 R~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~~v-dD~~~gITh--vlRg~e----~~~~t~~q~~l~ 426 (722)
T PLN02907 355 RGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFACPF-VDALEGVTH--ALRSSE----YHDRNAQYYRIL 426 (722)
T ss_pred EEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCceEE-EcccCCCce--EeecHh----hhhChHHHHHHH
Confidence 11111111 2257777765422122222334 567888877631 112223222 223446 555544443
Q ss_pred hhccCCCCceEEEEeeeeeeCCccccccC-------CCc--------ccHHHHHH-HcCchhhHHHHhhc-CcCCCcccC
Q 009321 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYS 321 (537)
Q Consensus 259 ~a~~~~~~~~~~~h~g~v~~~G~KMSKS~-------Gn~--------i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs 321 (537)
.+++.. .+.+ .|.+++.++|.|||||+ |-+ -|++.+.. +|.|++||-|++.. .-..+..|+
T Consensus 427 ~~lg~~-~p~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~ 504 (722)
T PLN02907 427 EDMGLR-KVHI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLME 504 (722)
T ss_pred HHcCCC-CCee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCcccc
Confidence 455443 3444 45678999999999998 432 25666654 59999999999987 556788999
Q ss_pred HHHHHHHHHH
Q 009321 322 VLQLDSASDA 331 (537)
Q Consensus 322 ~~~l~~~~~~ 331 (537)
++.|....+.
T Consensus 505 ~~~l~~~nr~ 514 (722)
T PLN02907 505 WDKLWTINKK 514 (722)
T ss_pred HHHHHHHHHH
Confidence 9999876554
No 93
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.59 E-value=1.9e-14 Score=146.33 Aligned_cols=222 Identities=20% Similarity=0.249 Sum_probs=132.5
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|++++...++|- ++-.|+..|+|.|.+ .....+.+.+.++|++|||.++
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~i~~~L~wlGl~~D 68 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFARK-----YGGKFILRIEDTDPE-------------RCRPEFYDAILEDLRWLGLEWD 68 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHHH-----TTSEEEEEEETSSTT-------------TCHHHHHHHHHHHHHHHT---S
T ss_pred CCCCCCCcccchhHHHHHHHHHHhc-----cCceEEEeccccccc-------------cchhhHHHHHHhheeEEEEecC
Confidence 5899999999999999999888883 456888899998752 2234588999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC-------------CC---CCC----CCcchhch-hhhcCCC
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SP---NYG----RLSGQRLE-NNRAGER 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-------------~~---~yg----~ls~~~l~-~~~~g~~ 184 (537)
....++|++.+...+++++|+++|.+| .|||..+ |+ .|. .+...... ....|..
T Consensus 69 ~~~~~QS~r~~~Y~~~~~~L~~~g~aY-----~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~ 143 (314)
T PF00749_consen 69 YGPYYQSDRLEIYQEAAEKLIDKGKAY-----PCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGP 143 (314)
T ss_dssp TCEEEGGGGHHHHHHHHHHHHHTTSEE-----EEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTS
T ss_pred CeEEeHHHHHHHHHHHHHHHhhcCCCc-----cccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCc
Confidence 467788999999999999999999999 8888662 11 121 11110010 0111211
Q ss_pred --cccccccc------------------CcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecc
Q 009321 185 --VAVDSRKR------------------NPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (537)
Q Consensus 185 --~~~~~~k~------------------~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~ 244 (537)
+.+..... ...||++++. +|.|.+|++|+. -....|.+. .+-|.
T Consensus 144 ~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r~-------------dg~ptY~fA~vV-DD~~~gITH--ViRG~ 207 (314)
T PF00749_consen 144 AVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRRS-------------DGYPTYHFAVVV-DDHLMGITH--VIRGE 207 (314)
T ss_dssp EEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEEST-------------TSEB-HHHHHHH-HHHHTT-SE--EEEEG
T ss_pred eeeeeecccccccccccCcceeeeeccccCCchhcccc-------------ccCcccccceee-cccccccCe--EEEcc
Confidence 10000000 1123444333 678999987643 233455444 44466
Q ss_pred cCcCcchhHHHHHH---hhccCCCCceEEEEeeeeee-CCccccccCCCcc-cHHHHHH-HcCchhhHHHHhhc
Q 009321 245 DLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFF-TIRQITE-RYHPLALRHFLISA 312 (537)
Q Consensus 245 Dl~fpH~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i-~~~dll~-~~~~d~lR~~ll~~ 312 (537)
| |..+.+.|. .+++..+ +.+ .|...++. +|+|+|||.+... .+..+.+ .+.|+++--|+...
T Consensus 208 D----~l~~t~~Q~~L~~~Lg~~~-P~~-~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 208 D----LLSSTPRQILLYEALGWPP-PPY-AHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp G----GTTCHHHHHHHHHHCTSSS--EE-EEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred c----cccccHHHHHHHHHhCCCC-cce-EeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 9 555555443 5555444 444 67655444 8999999999742 3555544 46776666555543
No 94
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.57 E-value=4e-14 Score=150.69 Aligned_cols=253 Identities=17% Similarity=0.148 Sum_probs=155.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|+|||||||++++...++|. ++-.++..++|.|. ......|.+.+.++|++||+.++
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~~-----~~G~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAKY-----YNGTCNLRFDDTNP-------------VKEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCc-------------ccCChHHHHHHHHHHHHcCCCCC
Confidence 5899999999999999999988883 45688889999875 22234599999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC----------CCC----CCCCcchh-c---hhhhcCCC---
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPN----YGRLSGQR-L---ENNRAGER--- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~----------~~~----yg~ls~~~-l---~~~~~g~~--- 184 (537)
+....+|++.+.+.++.++|+++|.|| ++||... .+. |-.++..+ + ++|..|..
T Consensus 68 ~~~~~qS~~~~~~~~~a~~Li~~G~AY-----~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g 142 (522)
T TIGR00440 68 GKIRYSSDYFDELYRYAEELIKKGLAY-----VDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEG 142 (522)
T ss_pred CCceEccccHHHHHHHHHHHHHcCCEE-----eecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCC
Confidence 666778999999999999999999999 7777642 111 11232211 1 23434431
Q ss_pred -----ccccccccCc--ccccccccccCCCCccc-cCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHH
Q 009321 185 -----VAVDSRKRNP--ADFALWKAAKAGEPSWD-SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (537)
Q Consensus 185 -----~~~~~~k~~~--~df~lwk~~~~g~~~w~-~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a 256 (537)
...+....++ +|+++.+......+ .. ..| .+.|.++.+|.. .....|.+..| -|.| |..|..-
T Consensus 143 ~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~-~~gdk~-~iyPtYdfa~~v-dD~l~gITHvi--Rg~E----~~~nt~~ 213 (522)
T TIGR00440 143 KAILRAKIDMASPFPVMRDPVAYRIKFAPHH-QTGTKW-CIYPMYDFTHCI-SDAMENITHSL--CTLE----FQDNRRL 213 (522)
T ss_pred CeEEEEeCcCCCCCceEeeeeEEEEecCCCC-CCCCCe-eEEeCcCCceee-hhccCCCceEe--ecHh----hhhcHHH
Confidence 0111110111 45555443211111 00 011 226777776532 12223322222 2335 4444321
Q ss_pred H---HhhccCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHHHHHH-HcCchhhHHHHhhcCcCCC
Q 009321 257 Q---SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHYRSP 317 (537)
Q Consensus 257 ~---~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll~-~~~~d~lR~~ll~~~~~~~ 317 (537)
+ ...++....+.. .+.+++.++|.|||||++.. .|+..+.+ +|.|++||-|++...+...
T Consensus 214 Y~~~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~ 292 (522)
T TIGR00440 214 YDWVLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQ 292 (522)
T ss_pred HHHHHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 1 112222212434 35577888999999999874 37888776 6999999999998755433
Q ss_pred -cccCHHHHHHHHHH
Q 009321 318 -LNYSVLQLDSASDA 331 (537)
Q Consensus 318 -~~fs~~~l~~~~~~ 331 (537)
...++..+.+..+.
T Consensus 293 ~~~~e~~~l~~~~r~ 307 (522)
T TIGR00440 293 DNNIEVVRLESCIRE 307 (522)
T ss_pred CCceehhhHHHHHHH
Confidence 34566666655543
No 95
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.56 E-value=8.7e-14 Score=148.13 Aligned_cols=255 Identities=18% Similarity=0.173 Sum_probs=164.3
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
+|+|..=. .|+|+|+|||||||++++...++|. ++-.++..++|.|. ......|.+.+.++
T Consensus 49 ~gkv~tRF-aPsPtG~LHiGharaalln~~~Ar~-----~gG~~iLRiEDTDp-------------~r~~~e~~~~I~~d 109 (574)
T PTZ00437 49 GGKPYFRF-PPEPNGFLHIGHAKSMNLNFGSARA-----HGGKCYLRYDDTNP-------------ETEEQVYIDAIMEM 109 (574)
T ss_pred CCcEEEEe-CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCc-------------cccChHHHHHHHHH
Confidence 45554333 5999999999999999999999884 45688888998874 23445699999999
Q ss_pred HHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC----------CCCCCCcch-h---chhhhcC
Q 009321 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----------PNYGRLSGQ-R---LENNRAG 182 (537)
Q Consensus 117 l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~----------~~yg~ls~~-~---l~~~~~g 182 (537)
|++||+.+ |..+.+|+|.+.+.++..+|+++|.|| ++||.... ..|-.++.. + .++|..|
T Consensus 110 L~wLGi~~-D~~~~qS~y~~~~ye~A~~Li~~G~AY-----~C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g 183 (574)
T PTZ00437 110 VKWMGWKP-DWVTFSSDYFDQLHEFAVQLIKDGKAY-----VDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQG 183 (574)
T ss_pred HHHcCCCC-CCCCcCchhHHHHHHHHHHHHHcCCEE-----EcCCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhc
Confidence 99999985 666788999999899999999999999 78876531 011112211 1 1223333
Q ss_pred -----CCc---cccccccCc--ccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCc---
Q 009321 183 -----ERV---AVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP--- 249 (537)
Q Consensus 183 -----~~~---~~~~~k~~~--~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fp--- 249 (537)
..+ ..+....|+ +|+++.+-.....+.=-..| .+.|.++.+| ++|=|..|+.|+.-
T Consensus 184 ~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~E 252 (574)
T PTZ00437 184 RYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLE 252 (574)
T ss_pred ccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeech
Confidence 211 111111122 45555543221111101234 4678887665 45666666664441
Q ss_pred ---chhH--HHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHHHHHH-HcCchhhHHH
Q 009321 250 ---HHEN--EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHF 308 (537)
Q Consensus 250 ---H~~~--~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll~-~~~~d~lR~~ 308 (537)
+.+- |+ ...++... +.. .+.+-++++|.|||||+... .|+..+.. +|.|++||-|
T Consensus 253 f~~r~~~y~wl--~~~l~l~~-p~~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f 328 (574)
T PTZ00437 253 FETRRESYFWL--LEELNLWR-PHV-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRF 328 (574)
T ss_pred hhcccHHHHHH--HHHhCCcc-cce-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHH
Confidence 1111 22 23333222 223 34577888999999999874 46766665 6999999999
Q ss_pred HhhcCc-CCCcccCHHHHHHHHHH
Q 009321 309 LISAHY-RSPLNYSVLQLDSASDA 331 (537)
Q Consensus 309 ll~~~~-~~~~~fs~~~l~~~~~~ 331 (537)
++...+ +.+..++++.|.+..+.
T Consensus 329 ~~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 329 CELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHHhCCCccceEeeHHHHHHHHHH
Confidence 998744 56778999999877654
No 96
>PLN02859 glutamine-tRNA ligase
Probab=99.55 E-value=5.5e-14 Score=154.41 Aligned_cols=274 Identities=15% Similarity=0.115 Sum_probs=165.3
Q ss_pred eeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcC
Q 009321 20 KIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLG 99 (537)
Q Consensus 20 ~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g 99 (537)
+.+||-..-++.+.- ..|+|..=+ .|.|+|+|||||+|++++...++|. +.-.++..++|.|.
T Consensus 246 ~~~~~~~~~~~hl~~-t~g~V~tRF-aPsPtG~LHiGharaallN~~~Ar~-----~~G~~~LRieDTdp---------- 308 (788)
T PLN02859 246 RPSNTKEILEKHLKA-TGGKVYTRF-PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGCCYLRFDDTNP---------- 308 (788)
T ss_pred cccCcHHHHHHHHhh-cCCceEEEe-CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC----------
Confidence 334444433444433 346655444 4999999999999999988888885 45678889998874
Q ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC-----------CCCC
Q 009321 100 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------SPNY 168 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-----------~~~y 168 (537)
......|.+.+.+++++||+. ++...++|+|.+.+-+...+|+++|.|| ++||... ||.+
T Consensus 309 ---~r~~~e~~~~I~edL~WLG~~-~d~~~~qSd~f~~~Y~~A~~Li~~G~AY-----~C~ct~eei~~~R~~~~~sp~R 379 (788)
T PLN02859 309 ---EAEKKEYIDHIEEIVEWMGWE-PFKITYTSDYFQELYELAVELIRRGHAY-----VDHQTPEEIKEYREKKMNSPWR 379 (788)
T ss_pred ---CccchHHHHHHHHHHHHcCCC-CCCcccccHhHHHHHHHHHHHHHcCCeE-----eccCCHHHHHHHHhhhccCCCC
Confidence 223456999999999999998 4666788999987778899999999999 7777652 3322
Q ss_pred CCCcch---hchhhhcC-----CCc---cccccccC--cccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCC
Q 009321 169 GRLSGQ---RLENNRAG-----ERV---AVDSRKRN--PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 235 (537)
Q Consensus 169 g~ls~~---~l~~~~~g-----~~~---~~~~~k~~--~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~ 235 (537)
..-... ..++|..| ..+ ..+....+ -+|.++.+-.....+-=-..|= ..|.|+.+|.. .....|.
T Consensus 380 d~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~-iyPtYdFA~~v-dD~legI 457 (788)
T PLN02859 380 DRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC-IYPSYDYAHCI-VDSLENI 457 (788)
T ss_pred CCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeE-EEecccccccc-cccccCC
Confidence 210000 11222222 111 11100011 1355444322111100001221 26778766532 1222332
Q ss_pred CeeEEEecccCcCcchhHHHHH---HhhccCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHHHHH
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT 297 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~---~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll 297 (537)
+..+. |.| |..+.+.| ..+++..+ +.+ .|.+.+.++|.|||||++.. .|+..+.
T Consensus 458 THvLR--g~E----~~~~~~~y~wl~~aLg~~~-P~~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glR 529 (788)
T PLN02859 458 THSLC--TLE----FETRRASYYWLLDSLGLYQ-PYV-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLR 529 (788)
T ss_pred ceEee--chh----hhcCCHHHHHHHHHcCCCC-CcE-EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHH
Confidence 22222 335 44443333 35554443 434 67788888999999999864 4677776
Q ss_pred H-HcCchhhHHHHhhcCcCC-Cc-ccCHHHHHHHH
Q 009321 298 E-RYHPLALRHFLISAHYRS-PL-NYSVLQLDSAS 329 (537)
Q Consensus 298 ~-~~~~d~lR~~ll~~~~~~-~~-~fs~~~l~~~~ 329 (537)
. +|.|++||-|++...+.. +. .|+++.|....
T Consensus 530 rrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~ 564 (788)
T PLN02859 530 RRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHI 564 (788)
T ss_pred HCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhC
Confidence 5 699999999999874443 44 59999995443
No 97
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.55 E-value=1.2e-13 Score=134.10 Aligned_cols=185 Identities=19% Similarity=0.209 Sum_probs=130.9
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++.....+|- +...++..|+|.|. ......+.+.+.+++++|||.+
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~-----~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dL~wlGl~~- 67 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK-----HGGKFILRIEDTDQ-------------ERSVPEAEEAILEALKWLGLDW- 67 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEECcCCC-------------CCCchHHHHHHHHHHHHcCCCC-
Confidence 5899999999999999888888884 34578888888764 1223358899999999999995
Q ss_pred CC---------ccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCccc
Q 009321 126 TY---------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196 (537)
Q Consensus 126 ~~---------~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~d 196 (537)
|. ...+|++.+.+.+.+++|+++|
T Consensus 68 d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g----------------------------------------------- 100 (239)
T cd00808 68 DEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG----------------------------------------------- 100 (239)
T ss_pred CcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-----------------------------------------------
Confidence 44 5677899999999999999988
Q ss_pred ccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH---HhhccCCCCceEEEEe
Q 009321 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMHN 273 (537)
Q Consensus 197 f~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~---~~a~~~~~~~~~~~h~ 273 (537)
.|.|.+++.+++- ....| ++-.+-|.| |+.+...| ..+++.+ .+.+ .|.
T Consensus 101 -------------------dg~ptY~~a~~vD-D~~~~--ithViRG~D----~~~~t~~q~~l~~aLg~~-~p~~-~h~ 152 (239)
T cd00808 101 -------------------DGFPTYHLANVVD-DHLMG--ITHVIRGEE----HLSSTPKQILLYEALGWE-PPKF-AHL 152 (239)
T ss_pred -------------------CCCcccccHHHHh-HHhcC--CCEEEEChh----hhhChHHHHHHHHHcCCC-CCce-Eee
Confidence 1345555544331 12233 444566779 66554444 4555444 3445 566
Q ss_pred eee-eeCCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcCC---CcccCHHHH
Q 009321 274 GHV-TNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS---PLNYSVLQL 325 (537)
Q Consensus 274 g~v-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~---~~~fs~~~l 325 (537)
..+ ..+|.|||||.|+ .+++.+.+ ++.|++++.|++...... +.-++.+.+
T Consensus 153 pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l 208 (239)
T cd00808 153 PLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEEL 208 (239)
T ss_pred ccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHH
Confidence 665 5599999999999 78888765 699999999988643322 223555544
No 98
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.4e-12 Score=131.72 Aligned_cols=249 Identities=22% Similarity=0.273 Sum_probs=154.8
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
|++=. .|+|+|.+|||-+|+++.- ||-++-+.-.|+..+.|.|.+ .++..-.+.+.++|.+
T Consensus 34 VRvRF-APSPTGfLHlGgLRTALfN-----YLfArk~gGkFiLRiEDTDq~-------------R~v~gs~e~i~~~L~w 94 (524)
T KOG1149|consen 34 VRVRF-APSPTGFLHLGGLRTALFN-----YLFARKKGGKFILRIEDTDQK-------------RLIRGSEEAIYEDLKW 94 (524)
T ss_pred eEEee-cCCCCcceehhhHHHHHHH-----HHHHHhcCCeEEEEecccccc-------------ccccchHHHHHHHHHh
Confidence 44444 4889999999999999554 554556777888888888753 1222244678999999
Q ss_pred cCCCCCCCcc---------chhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCC----CCc
Q 009321 120 LQCLPPTYQP---------RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RLS 172 (537)
Q Consensus 120 L~i~~~~~~~---------r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg----~ls 172 (537)
+||.+ |.-| +.|+..+...+..++|++.|.|| .+||... .|.|. .++
T Consensus 95 ~nl~~-DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AY-----rCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls 168 (524)
T KOG1149|consen 95 ANLDW-DEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAY-----RCFCSEERLDLLRKSALKKHEIPRYDRKCANLS 168 (524)
T ss_pred cCCCc-ccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCee-----EeccCHHHHHHHHHhhhccCCCCcccchhcccC
Confidence 99985 4444 45677888999999999999999 8898762 24343 455
Q ss_pred chhchhhh-cCCCcc--ccccccCc--cccc----cccccc-CCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEe
Q 009321 173 GQRLENNR-AGERVA--VDSRKRNP--ADFA----LWKAAK-AGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 173 ~~~l~~~~-~g~~~~--~~~~k~~~--~df~----lwk~~~-~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~ 242 (537)
..++.... .|.... ....+++| .|.+ -|.... .|++. .--.+|.|.||++| .+|-|..
T Consensus 169 ~~ei~~~lakg~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~V--vmKSDgfPTYHfAn----------VVDDh~M 236 (524)
T KOG1149|consen 169 DAEIKQKLAKGTPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPV--VMKSDGFPTYHFAN----------VVDDHLM 236 (524)
T ss_pred HHHHHHHHhcCCCeeEEEecCCCCCChhhhhhhhhhccccccCCCcE--EEecCCCcceeeee----------eecchhc
Confidence 55544332 243321 11112121 1111 111110 11110 01236899999876 4555666
Q ss_pred cccCcCc---chhHHHHHH---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHH-HcCchhhHHHHhhc--
Q 009321 243 GIDLIFP---HHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-- 312 (537)
Q Consensus 243 G~Dl~fp---H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~-- 312 (537)
|+-|+.- |..+.+-+. .|+ +.+|+++ .|-..++. +|.|.||+.|. +.+.++.+ +|=|+++=-|++..
T Consensus 237 ~IsHViRGeEWlpST~KH~lLYkAf-gW~pPkF-aHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gw 313 (524)
T KOG1149|consen 237 GISHVIRGEEWLPSTLKHILLYKAF-GWQPPKF-AHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGW 313 (524)
T ss_pred chhheeecchhccccHHHHHHHHHh-CCCCCce-eeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCC
Confidence 5554432 333333222 343 4455655 77666554 99999999998 67777776 58899998888775
Q ss_pred CcCC-CcccCHHHHHHH
Q 009321 313 HYRS-PLNYSVLQLDSA 328 (537)
Q Consensus 313 ~~~~-~~~fs~~~l~~~ 328 (537)
..+. .--||.+.|.+.
T Consensus 314 g~~~~~~f~sl~eLieq 330 (524)
T KOG1149|consen 314 GFRTENEFFSLEELIEQ 330 (524)
T ss_pred CcccccccccHHHHHHH
Confidence 3333 334688887754
No 99
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.3e-12 Score=133.71 Aligned_cols=159 Identities=23% Similarity=0.178 Sum_probs=122.7
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccC-CCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~- 312 (537)
.|+|+.++|+||+-.|..+.+.-+.|+.. +.|++-.-.|||++++++|||||.||+.|+++.++++|+|+.|+.|+..
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 38999999999999999888888878764 4677777889999999999999999999999999999999999999886
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHH---hcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHH
Q 009321 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEV---ALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 389 (537)
Q Consensus 313 ~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~---~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~ 389 (537)
.--.|-||.+.....+.=.+......+..++. .|+.. ....-.|+-+.+.++.++..-.+++ .+.++..|+..
T Consensus 742 D~veDANF~ea~AnAaILRLyt~~ew~eEm~~~~s~LrtG---p~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~ 817 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAAILRLYTYVEWIEEMCENRSSLRTG---PASTFADRVFENEMNALIAKTERAY-EDTLFKDALKY 817 (1080)
T ss_pred CCcccchhHHhcccHHHHHHHHHHHHHHHHHhhHHhhccC---chhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh
Confidence 77789999888776665554444344333322 22221 1111245677788888888888898 78889999987
Q ss_pred HHHHHHHH
Q 009321 390 AFQDALKF 397 (537)
Q Consensus 390 ~L~~l~~~ 397 (537)
=++++..+
T Consensus 818 Gfyd~qaA 825 (1080)
T KOG0437|consen 818 GFYDLQAA 825 (1080)
T ss_pred hhHHHHHH
Confidence 56666543
No 100
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.06 E-value=1.6e-09 Score=99.47 Aligned_cols=140 Identities=12% Similarity=0.024 Sum_probs=110.5
Q ss_pred HcCchhhHHHHhhcCcCCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCcccc-CC---C------CCCCChHHHHHHH
Q 009321 299 RYHPLALRHFLISAHYRSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPFQE-HG---K------TARINPAAEDCIN 367 (537)
Q Consensus 299 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~-~~l~~l~~~~~~~~~~l~~~~~-~~---~------~~~~~~~l~~~l~ 367 (537)
..+.+++||++|+....++++|+++.+.+.. ++..+++++++|+.+++++... .. . ..+.+..|...+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 3577999999999999999999999977665 4566899999999999877542 11 0 0223456777888
Q ss_pred HHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCch-hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 368 ~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.+.+.+..++ .+.++..++.. +.+|+..+|.|++.+.+.... +....|+.++.++..++.+++.+|||.+.
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888888887 67776666555 999999999999988765432 33567899999999999999999999764
No 101
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.51 E-value=3.6e-07 Score=70.28 Aligned_cols=57 Identities=33% Similarity=0.514 Sum_probs=42.0
Q ss_pred HHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 372 ~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
+|.+||+||||||.|++. |+++++.+|+...... ...+..+...++.+..+|||...
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~~~~-----------~~~~~~~~~~l~~~~~vLGl~~~ 57 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALESND-----------KEDLEALAAALRKLLDVLGLLQE 57 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcccCC-----------HHHHHHHHHHHHHHHhcCcCCCC
Confidence 488999999999999999 9999999999222211 22234567888899999999764
No 102
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=98.41 E-value=4.2e-06 Score=74.72 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=88.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC----CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH
Q 009321 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 395 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~ 395 (537)
||++.+..+.+.+.++++.+..+.......... +.....+.++...+.++...+.++| +.+++..|+.. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 688889888888988988877653321211110 1112345788899999999999999 89999999999 99999
Q ss_pred H--HHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHH
Q 009321 396 K--FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQ 448 (537)
Q Consensus 396 ~--~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~ 448 (537)
. .+|+|++..+||....+.......+..+...++.++.+|- |+|. .++++|+
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~-~ae~l~~ 133 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPF-ITEELWQ 133 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHHh
Confidence 7 6999999999986422211122344566677777777774 7776 5555543
No 103
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.1e-06 Score=91.49 Aligned_cols=98 Identities=24% Similarity=0.318 Sum_probs=78.8
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
|+|..=. +|-|+|+||||||+.+++---++ .-|+-..++.+||.. |..=.++|.+.+++|+
T Consensus 199 GkVv~RF-PPEpSGyLHIGHAKAALLNqYfa-----~~~~G~LIvRFDDTN-------------PaKE~~eFe~~IleDl 259 (712)
T KOG1147|consen 199 GKVVTRF-PPEPSGYLHIGHAKAALLNQYFA-----QAYQGKLIVRFDDTN-------------PAKENEEFEDVILEDL 259 (712)
T ss_pred CceEEec-CCCCCceeehhhHHHHHHHHHHH-----HhcCceEEEEecCCC-------------cchhhHHHHHHHHHHH
Confidence 4555444 48999999999999886443332 345667888888754 4444567999999999
Q ss_pred HHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeec
Q 009321 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 155 (537)
Q Consensus 118 ~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~ 155 (537)
..|||. +|.+..+|+|.+.|..+..+|+..|-||..+
T Consensus 260 ~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 260 SLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHhCcC-cceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 999998 7999999999999999999999999999765
No 104
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=98.34 E-value=1.6e-06 Score=75.57 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCccccCCC----------CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhh
Q 009321 335 IYQTLQDCEVALSPFQEHGK----------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNM 404 (537)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~----------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~ 404 (537)
++|+++|+.+++++...... .++.+..|...+..+...+..++ .+++ |..+..|+++|+..+|+||+.
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~-~~~~-p~~l~~yL~~La~~f~~fy~~ 78 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAA-KDLE-PHKLCDYLYELAQAFNSFYDN 78 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHH-HHT--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999887643221 12234567788888999999998 6766 666666699999999999999
Q ss_pred hcccCch-hhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 405 LKKKQPK-QQQ-LSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 405 ~~~~~~~-~~~-~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
++++... ... ..|+.++.++..++..++.+|||.|.
T Consensus 79 ~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~~ 116 (119)
T PF05746_consen 79 VRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEPL 116 (119)
T ss_dssp S-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9887643 223 77899999999999999999999764
No 105
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.29 E-value=9.4e-06 Score=70.06 Aligned_cols=114 Identities=8% Similarity=0.132 Sum_probs=81.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHH
Q 009321 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 399 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N 399 (537)
|+++.+....|.+.++++.+...................+++++..+.++.+++.++| ++++++.|+.. +++++..+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHH-HHHHHHHHH
Confidence 5778888888888888887665332111000001123457899999999999999999 89999999999 999999999
Q ss_pred HHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHH
Q 009321 400 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQ 448 (537)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~ 448 (537)
+|++...|+ ...+...++.++.+|. |+|. .++++|.
T Consensus 79 ~~~~~~~p~------------~~~~~~~l~~~~~lL~P~~P~-~aeei~~ 115 (117)
T cd07958 79 KYKKKDAQH------------AAVLREALETLVLLLAPFAPH-IAEELWE 115 (117)
T ss_pred Hhhccccch------------HHHHHHHHHHHHHHHcccchH-HHHHHHh
Confidence 998765431 3445667777777775 7776 5555554
No 106
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=98.19 E-value=2.7e-05 Score=68.40 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhh-h-HHHHHHHHHHHHHHHHHHh
Q 009321 356 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-Q-LSLIESLRKIENEVKEVLR 433 (537)
Q Consensus 356 ~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~l~~~l~ 433 (537)
.+.+.++...+.++...+.++| ++++++.|+.. +++|++.+|+|++..+||...+. + ......+..+...++.+..
T Consensus 35 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 35 TEEDEELLEEAEELLEEVAEAM-EELEFRKALEE-IMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999 89999999999 99999999999999999865322 1 2223345566677788888
Q ss_pred hcc-cCCCCChHHHHH
Q 009321 434 ILG-LLPPGAYSEVLQ 448 (537)
Q Consensus 434 vLG-i~~~~~~~~~~~ 448 (537)
+|. |+|. .++++|+
T Consensus 113 lL~P~~P~-~aeei~~ 127 (129)
T cd07957 113 LLSPFMPE-TAEKILD 127 (129)
T ss_pred HhcCCCCh-HHHHHHH
Confidence 885 7887 5666654
No 107
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.18 E-value=2.6e-05 Score=73.25 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=95.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHH
Q 009321 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 393 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~ 393 (537)
|+.+.+.+..+.+.+++++++.+...+...... ......|++++..+..+...+.++| +++++..|+.. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 567888888888888999887765544332111 1113457899999999999999999 89999999999 999
Q ss_pred HHH--HHHHHHhhhcccCch--hhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 394 ALK--FINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 394 l~~--~~N~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
|+. ..|.|++..++|... +.+..+......+...++.++.+|. |+|. .++++|+.+.
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~aeel~~~l~ 140 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPF-TAEEVWEHLP 140 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhh-hHHHHHHhcc
Confidence 996 569999999988642 1122222233455667888888886 8888 7889998875
No 108
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.12 E-value=4.4e-05 Score=65.98 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=81.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHH-HHHHHHH
Q 009321 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-QDALKFI 398 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L-~~l~~~~ 398 (537)
|+.+.+....|.+.+++........... +.......|+++++.+.++...+.++| +++++..|++. + +++.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~-~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETEG---ELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKE-GLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccC---CccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHH
Confidence 5677777777777777766554222111 101123467899999999999999999 89999999999 7 9999999
Q ss_pred HHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHH
Q 009321 399 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQ 449 (537)
Q Consensus 399 N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~ 449 (537)
|.|++..++|. ....+...++.++.+|. |+|. .++++|+.
T Consensus 76 ~~Y~~~~~~~~----------~~~~~~~~l~~~~~lL~P~~P~-~aeeiw~~ 116 (117)
T cd07959 76 DWYRERGGAGM----------NKDLLRRFIEVWTRLLAPFAPH-LAEEIWHE 116 (117)
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHHHHcCcchH-hHHHHHhh
Confidence 99998766541 12345667777788885 7777 66666653
No 109
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=98.05 E-value=9.1e-06 Score=60.79 Aligned_cols=54 Identities=28% Similarity=0.350 Sum_probs=41.6
Q ss_pred HHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhccc
Q 009321 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437 (537)
Q Consensus 373 v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi 437 (537)
|.++|+||||||.|++. ++++++.+|.++.... . ...+..+...+..++.+||+
T Consensus 2 f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~-------~---~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAV-LFELAREINRLLLKAV-------D---AEELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHH-HHHHHHHHHHHhhccc-------C---HHHHHHHHHHHHHHHhccCC
Confidence 78899999999999999 9999999999874321 0 01134455677778889987
No 110
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=98.01 E-value=1.9e-05 Score=83.41 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeee-eeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|+.+ |++.-+-...-++...+ +-++.-.+ ..+|.|||||.||.|++.| +..+|..++=++++.
T Consensus 186 ~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 186 DVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 6789999999754 33222222222233322 22333333 3489999999999999877 445677777776654
No 111
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.88 E-value=0.00028 Score=72.54 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=45.8
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
...+|--|+|.+||||.-+++ ..+++...|++|.+.. .|+..-+ . ..+.+++ ........+..++-++|
T Consensus 4 ~v~~G~~PTG~~HlG~~l~~~----~~~~~~q~~~~~~i~I--aD~ha~t-~---~~~~~~~-~~~~~~~~~~~~~lA~G 72 (328)
T TIGR00233 4 RVLTGIQPSGKMHLGHYLGAI----QTKWLQQFGVELFICI--ADLHAIT-V---KDNTDPD-ALRKAREELAADILAVG 72 (328)
T ss_pred EEEEeeCCCcHhHHHHHHHHH----HHHHHHhCCCCEEEEe--ecchhhc-C---CCCCCHH-HHHHHHHHHHHHHHHhC
Confidence 456788888999999954443 3333346798887653 2322211 0 0111233 33445566677888999
Q ss_pred CCCCC-Cccchhhh
Q 009321 122 CLPPT-YQPRVSDH 134 (537)
Q Consensus 122 i~~~~-~~~r~s~~ 134 (537)
+.+.- .+.+.|+.
T Consensus 73 lDp~k~~if~qS~~ 86 (328)
T TIGR00233 73 LDPKKTFIFLQSDY 86 (328)
T ss_pred cChhheEEEEcCCc
Confidence 98421 23444544
No 112
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.85 E-value=9.6e-05 Score=76.89 Aligned_cols=86 Identities=23% Similarity=0.236 Sum_probs=51.4
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
++.-...+|--|+|.+||||. +....++++.+ .|++|.+.. .|... +..+ +.+++++ .++..++..++
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~---~~~~~~~~lQ~-~g~~~~i~I--aD~ha-~~~~----~~~~e~~-~~~~~~~~~~~ 131 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHK---MVFDELKWHQE-FGANVYIPI--ADDEA-YAAR----GLSWEET-REWAYEYILDL 131 (368)
T ss_pred CCCeEEEEccCCCCCccHHHH---HHHHHHHHHHh-cCCCEEEEe--cchHH-HhcC----CCCHHHH-HHHHHHHHHHH
Confidence 444556677778899999995 33444555544 888876543 33322 1111 4566554 44556688899
Q ss_pred HHcCCCCCC-CccchhhhH
Q 009321 118 ADLQCLPPT-YQPRVSDHM 135 (537)
Q Consensus 118 ~~L~i~~~~-~~~r~s~~~ 135 (537)
-++|+.+.- .+...|++.
T Consensus 132 lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 132 IALGFDPDKTEIYFQSENI 150 (368)
T ss_pred HHhCCCccceEEEECCchH
Confidence 999998421 234445543
No 113
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.83 E-value=6.4e-05 Score=75.29 Aligned_cols=76 Identities=13% Similarity=0.233 Sum_probs=43.4
Q ss_pred EEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEECC-cchh-hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009321 43 YVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-FTDV-DDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 43 y~~gPt~yg-~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~-idd~-d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
..||--|+| .+||||.-+ ...+.+ +...|+++.++.+ .+-+ +++.-....+.-.++ +-..++...+..++.+
T Consensus 2 iy~G~~PTg~~lHlGh~~~---l~~~~~-lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~-~~i~~n~~~~~~~~~a 76 (273)
T cd00395 2 LYCGIDPTADSLHIGHLIG---LLTFRR-FQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP-EEVRQNIRRIAAQYLA 76 (273)
T ss_pred eEEeEcCCCCCccHHHHHH---HHHHHH-HHHCCCCEEEEEecCceeeCCCCCccccccCCCH-HHHHHHHHHHHHHHHH
Confidence 356788889 799999544 333444 4457999887653 1111 222100011111233 4455567888888999
Q ss_pred cCCC
Q 009321 120 LQCL 123 (537)
Q Consensus 120 L~i~ 123 (537)
+|+.
T Consensus 77 ~g~d 80 (273)
T cd00395 77 VGIF 80 (273)
T ss_pred hcCc
Confidence 9875
No 114
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=97.82 E-value=6.4e-05 Score=60.83 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHH-HH
Q 009321 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NS 400 (537)
Q Consensus 322 ~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~-N~ 400 (537)
++.|.++.+.+.+|+.++.++. . . .+..+.++|.++|+||||+|.|++. |+++++.+ |+
T Consensus 1 ~e~L~~A~~~l~rl~~~l~~~~----~--------~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~ 60 (81)
T cd07955 1 DEVLADAEARLARWRSAVALPD----G--------P-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSR 60 (81)
T ss_pred ChHHHHHHHHHHHHHHHHHhcc----c--------c-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhc
Confidence 3678899999999888776542 0 0 1234668999999999999999999 99999877 64
No 115
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=97.82 E-value=0.00025 Score=66.77 Aligned_cols=128 Identities=11% Similarity=0.143 Sum_probs=89.8
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHH--hcCccccC------CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHH
Q 009321 320 YSVLQLDSASD-AVFYIYQTLQDCEV--ALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (537)
Q Consensus 320 fs~~~l~~~~~-~l~~l~~~~~~~~~--~l~~~~~~------~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~ 390 (537)
||++.++...+ .+.+|+++.+.+.+ .+...... ......|+|++..++++...+.++| +++++..|+..
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~- 78 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRA- 78 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-
Confidence 78899998887 78889998876643 22211100 1124568999999999999999999 89999999999
Q ss_pred HHHHHHHH-HHHHhhhcc--cCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 391 FQDALKFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 391 L~~l~~~~-N~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+++|+... +.|++..+. +... ....+......+...+..++.+|. |+|. .++++|+.+.
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~-~aEElw~~l~ 141 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPF-ITEEIYQNLR 141 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHhh
Confidence 99999876 667665432 2211 111122334456677778888885 8887 7889998775
No 116
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.81 E-value=4.8e-05 Score=76.10 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=45.6
Q ss_pred EEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEECC-cchh-hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009321 43 YVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-FTDV-DDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 43 y~~gPt~yg-~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~-idd~-d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
..||--|+| .+||||.-. .-.+.++.+ .|++|+++.+ .+-+ +++.-+...+.+.+++++ .++...+..++.+
T Consensus 3 iy~G~~PTg~~lHLG~~~~---~~~~~~lq~-~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~~a 77 (269)
T cd00805 3 VYIGFDPTAPSLHLGHLVP---LMKLRDFQQ-AGHEVIVLIGDATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQLKA 77 (269)
T ss_pred EEEeeCCCCCcccHHHHHH---HHHHHHHHH-CCCeEEEEECCCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 356888889 899999554 345666655 4998875543 2222 222111122234555544 5566778888888
Q ss_pred cCCC
Q 009321 120 LQCL 123 (537)
Q Consensus 120 L~i~ 123 (537)
+|+.
T Consensus 78 ~g~~ 81 (269)
T cd00805 78 ILDF 81 (269)
T ss_pred HHcc
Confidence 8874
No 117
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=97.72 E-value=0.00016 Score=63.15 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCcccc-C-C------C-----CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHH
Q 009321 335 IYQTLQDCEVALSPFQE-H-G------K-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 335 l~~~~~~~~~~l~~~~~-~-~------~-----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
++|+++|+.+++++... . . . .++.+..+...+..+.+.+..++ .+.+ |..+..|+.+|+..+|+|
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~-~~~~-~~~l~~~l~~L~~~~~~f 78 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAA-ETLE-PHRLANYLYDLASAFHSF 78 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HHCC-cHHHHHHHHHHHHHHHHH
Confidence 35777777777665431 0 0 0 02234567777888888888887 6666 444455599999999999
Q ss_pred HhhhcccCch--hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 402 LNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 402 ~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
|+.+++.... +....|+.++..+..++..++.+|||.|.
T Consensus 79 y~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~ 119 (122)
T smart00836 79 YNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISAP 119 (122)
T ss_pred HccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9998876543 23567899999999999999999999764
No 118
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.66 E-value=7.1e-05 Score=79.17 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=46.0
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..+|..||.|... |++.-.-...-++..+ + +-++.-.++ .+|+|||||.||.|++.| +..+|..++=++++.
T Consensus 188 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~-~-~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 188 GCDLQLGGSDQWG-NILSGRDLQRRYGGKP-Q-FGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCEEeccHHHHH-HHHHHHHHHHHhCCCC-e-EEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 6889999999874 5543222222223222 2 223333333 389999999999999987 456777777777664
No 119
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=97.65 E-value=0.00062 Score=58.25 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCc
Q 009321 357 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (537)
Q Consensus 357 ~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~ 410 (537)
+.+.+++..+..+.+.+.++| +++.+..|+.. +++|+..+|.|++..+||..
T Consensus 39 ~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n~y~~~~~pw~~ 90 (117)
T cd07375 39 EADRELLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELNWYLDELKPALQ 90 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhccHHHHHhhHHHc
Confidence 357899999999999999999 89999999999 99999999999998888864
No 120
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.61 E-value=0.00026 Score=72.87 Aligned_cols=71 Identities=15% Similarity=0.044 Sum_probs=42.7
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
...+|--|+|.+||||..+. -.++++.+ .|++|++.. .|+-.-+-. ..+++ -..++...+..++.++|
T Consensus 32 ~v~~G~~PTG~lHLG~~~~~---~~~~~lq~-~g~~~~i~I--aD~ha~~~~-----~~~~~-~i~~~~~~~~~~~~A~G 99 (329)
T PRK08560 32 KAYIGFEPSGKIHLGHLLTM---NKLADLQK-AGFKVTVLL--ADWHAYLND-----KGDLE-EIRKVAEYNKKVFEALG 99 (329)
T ss_pred EEEEccCCCCcchhhhhHHH---HHHHHHHH-CCCeEEEEE--ccchhhcCC-----CCCHH-HHHHHHHHHHHHHHHcC
Confidence 44588889999999995433 33444444 588876553 222111100 02343 44456667888999999
Q ss_pred CCC
Q 009321 122 CLP 124 (537)
Q Consensus 122 i~~ 124 (537)
+.+
T Consensus 100 ~dp 102 (329)
T PRK08560 100 LDP 102 (329)
T ss_pred CCh
Confidence 974
No 121
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.58 E-value=0.00012 Score=74.18 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=45.8
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH--H
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD--M 117 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~--l 117 (537)
.....||--|+|.+||||+.+.. ..+.|...|++|.++.+ |.-..+-... ....+-...+...+... +
T Consensus 5 ~~~~y~G~~PTg~lHlG~l~~~~----~~~~lq~~g~~~~i~ia--D~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~ 74 (292)
T PF00579_consen 5 PFRVYTGIDPTGDLHLGHLVPIM----KLIWLQKAGFKVIILIA--DLHALLGDPS----KGDERKIRSRAEYNINDKAI 74 (292)
T ss_dssp SEEEEEEEESSSS-BHHHHHHHH----HHHHHHHTTSEEEEEEE--HHHHHHTTTT----GSSHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeECCCCcccchHHHHHH----HHHHHHhcCCccceEec--chhhcccCcc----cccHHHHHHHHHHHHHHHHH
Confidence 34556678888999999987764 33444448999887754 2211110000 01223333344555555 7
Q ss_pred HHcCCCCCC-CccchhhhH
Q 009321 118 ADLQCLPPT-YQPRVSDHM 135 (537)
Q Consensus 118 ~~L~i~~~~-~~~r~s~~~ 135 (537)
-++|+.+.. .+...|+..
T Consensus 75 la~g~d~~k~~i~~~s~~~ 93 (292)
T PF00579_consen 75 LALGLDPEKTEIFRQSDWP 93 (292)
T ss_dssp HHTTSHTTTEEEEEGHHHH
T ss_pred HHhccCccceEEEeCCCcc
Confidence 788887422 344445433
No 122
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.58 E-value=0.00049 Score=69.23 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=44.3
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009321 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i 122 (537)
..+|--|+|.+||||.-+++. ..+.|+..|+++.+.. .|.-.-+ . ...+++ -.+++..++..++.++|+
T Consensus 2 i~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~I--aD~ha~t-~----~~~~~~-~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 2 VLSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFFI--ADLHALT-V----KQLDPE-ELRQNTRENAKDYLACGL 70 (280)
T ss_pred EEEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEEe--cchHHHh-C----CCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 457788889999999766432 3334444588887663 2322111 0 012343 455677888999999999
Q ss_pred CC
Q 009321 123 LP 124 (537)
Q Consensus 123 ~~ 124 (537)
.+
T Consensus 71 dp 72 (280)
T cd00806 71 DP 72 (280)
T ss_pred Cc
Confidence 84
No 123
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00042 Score=72.45 Aligned_cols=91 Identities=9% Similarity=0.054 Sum_probs=51.3
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
++.-...+|--|+|.+|||| .++..--+.. |...|++|+++.. |+-.-+- ...|.+++++ +.....+...+
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~Ia--D~hA~~~---~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWVA--DWFALLN---NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEEc--cceeecC---CCCCCCHHHH-HHHHHHHHHHH
Confidence 34445666788999999999 2222222333 4567999886642 2111000 0123445444 45666788889
Q ss_pred HHcCCCCC-CCccchhhhHHH
Q 009321 118 ADLQCLPP-TYQPRVSDHMEQ 137 (537)
Q Consensus 118 ~~L~i~~~-~~~~r~s~~~~~ 137 (537)
.++|+.+. ..+...|++++.
T Consensus 135 ~A~GlDp~k~~i~~qS~~v~~ 155 (383)
T PTZ00126 135 KAAGMDMDNVRFLWASEEINK 155 (383)
T ss_pred HHhCCCccceEEEECChhhhh
Confidence 99999842 134445665543
No 124
>PLN02486 aminoacyl-tRNA ligase
Probab=97.52 E-value=0.0011 Score=69.14 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCcceEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg-~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
.|+.-...||=-|+| .+|||| +|.+..++.+.+..|..+... ++|. .+.+. .+.+++++ .++..+..+
T Consensus 70 ~~~~~~vYtG~~PSg~~lHlGH---lv~~~~~~~lQ~~~~~~~~I~--iaD~-e~~~~----~~~~~e~i-~~~~~en~~ 138 (383)
T PLN02486 70 KGEKFYLYTGRGPSSEALHLGH---LIPFMFTKYLQDAFKVPLVIQ--LTDD-EKFLW----KNLSVEES-QRLARENAK 138 (383)
T ss_pred cCCCeEEEeCCCCCCccccHHH---HHHHHHHHHHHHhCCCeEEEE--ecCH-HHHhh----cCCCHHHH-HHHHHHHHH
Confidence 345556677888998 599999 455555664444557665555 4443 22222 24666554 567777888
Q ss_pred HHHHcCCCC
Q 009321 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~L~i~~ 124 (537)
++.++|+.+
T Consensus 139 ~iiA~G~dp 147 (383)
T PLN02486 139 DIIACGFDV 147 (383)
T ss_pred HHHHhCCCC
Confidence 899999874
No 125
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.48 E-value=0.00055 Score=71.88 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=42.1
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009321 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i 122 (537)
.++|..|+|.+||||.-.++.- ..+.+...|++++|.. -|+-.-+ ...++.++.+ +..++..++-++|+
T Consensus 5 vlSGiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I--ADlHAlT------~~~dp~~lr~-~~~e~aa~~LA~Gl 73 (431)
T PRK12284 5 VLTGITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL--ADYHALI------KCDDPARIQR-STLEIAATWLAAGL 73 (431)
T ss_pred EEEEecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe--echhhcc------CCCCHHHHHH-HHHHHHHHHHHhCC
Confidence 5778999999999995444221 2223333589887553 2221111 0134555444 34557888999999
Q ss_pred CC
Q 009321 123 LP 124 (537)
Q Consensus 123 ~~ 124 (537)
.+
T Consensus 74 DP 75 (431)
T PRK12284 74 DP 75 (431)
T ss_pred Cc
Confidence 84
No 126
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00067 Score=69.75 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=42.9
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
.+.++|--|+|.+||||.-.++-- ..+.+...|.++++. +.|+-. +.. ..+++++ +++..+...++-++
T Consensus 4 ~~v~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~--IADlHa--lt~----~~~~~~l-~~~~~~~~~~~lA~ 72 (332)
T PRK12556 4 KIMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF--IADYHA--LNA----VHDPEQF-RSYTREVAATWLSL 72 (332)
T ss_pred CEEEEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE--Eechhh--ccC----CCCHHHH-HHHHHHHHHHHhhe
Confidence 366788999999999995444221 223333446555544 333322 110 1255554 45666788888999
Q ss_pred CCCC
Q 009321 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 73 GlDP 76 (332)
T PRK12556 73 GLDP 76 (332)
T ss_pred eecc
Confidence 9984
No 127
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=97.41 E-value=0.00034 Score=63.52 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHH-HHHH-HHHHhhhcccCchhh-hHHHHHHHHHHHHHHHHHHhhc
Q 009321 359 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA-LKFI-NSSLNMLKKKQPKQQ-QLSLIESLRKIENEVKEVLRIL 435 (537)
Q Consensus 359 ~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l-~~~~-N~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~l~vL 435 (537)
|+|+++.+.++.+.+.++| ++|++..|+.. ++.| ...+ |.|++..++|...+. ...+. ....+..+++.++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhcc
Confidence 4789999999999999999 88999999999 9997 5666 999999988754221 12233 5567778888888888
Q ss_pred c-cCCCCChHHHHHHH
Q 009321 436 G-LLPPGAYSEVLQQL 450 (537)
Q Consensus 436 G-i~~~~~~~~~~~~~ 450 (537)
. |+|. .++++|+.+
T Consensus 78 ~P~~P~-~aEeiw~~l 92 (153)
T PF08264_consen 78 SPFMPF-IAEEIWQRL 92 (153)
T ss_dssp TTTSHH-HHHHHHHHC
T ss_pred CCCCcH-HHHHHHHHh
Confidence 5 8887 789999765
No 128
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0011 Score=66.91 Aligned_cols=74 Identities=14% Similarity=-0.011 Sum_probs=46.7
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCC-CceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLK-CEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G-~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
-....+|-.|+|.+||||.-.++ -.++.-..+ ++++|.. .|+|-- --.+.++++-.+.+..++..++-
T Consensus 5 ~~~vlSG~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~I-aDlha~------t~~~~~~~~~l~~~~~e~~a~~L 73 (314)
T COG0180 5 KFRVLSGIQPSGKLHLGNYLGAI----RNWVLLQEEYYECFFFI-ADLHAI------TVRQDPTEEDLRQATREVAADYL 73 (314)
T ss_pred CceEEecCCCCCCcchhHhHHHH----HHHHHHhcccCceEEEE-ecHHHh------hcCCCChHHHHHHHHHHHHHHHH
Confidence 34677899999999999965542 333333445 4665432 222211 01233444667778889999999
Q ss_pred HcCCCC
Q 009321 119 DLQCLP 124 (537)
Q Consensus 119 ~L~i~~ 124 (537)
++||.+
T Consensus 74 A~GiDP 79 (314)
T COG0180 74 AVGLDP 79 (314)
T ss_pred HhccCc
Confidence 999984
No 129
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.38 E-value=0.0043 Score=63.93 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=43.5
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
.+.++|--|+|.+||||.-.++ .-.+.|...|. |+ +.=.|+| . +.. ...+++++. ++..+...++-++
T Consensus 3 ~~v~sG~~PTG~~HLGn~l~~~---~~~~~lQ~~~~-~~-i~IaD~h-a-~~~----~~~~~~~i~-~~~~~~~~~~lA~ 70 (333)
T PRK12282 3 PIILTGDRPTGKLHLGHYVGSL---KNRVALQNEHE-QF-VLIADQQ-A-LTD----NAKNPEKIR-RNILEVALDYLAV 70 (333)
T ss_pred CEEEEeeCCCCcchHHHHHHHH---HHHHHHHhCCC-EE-EEEccch-h-HhC----CCCCHHHHH-HHHHHHHHHHHHh
Confidence 3567788888999999955543 23335555664 53 3334444 2 221 124555544 4666788888899
Q ss_pred CCCC
Q 009321 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 71 G~dp 74 (333)
T PRK12282 71 GIDP 74 (333)
T ss_pred CcCh
Confidence 9984
No 130
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00042 Score=72.42 Aligned_cols=55 Identities=20% Similarity=0.065 Sum_probs=35.5
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee-CCccccccCCCcccH
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTI 293 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~ 293 (537)
..|+..||.|.-+-|...--- ...++.. ..+-+|+-.++- +|.|||||.||.++.
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl-~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDL-IRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred ccchhcCChHHHHHHHHHHHH-HHHhCCC--CeEEEEeccccCCCCCcccccCCCceEc
Confidence 467999999987766633222 2223342 234477666654 999999999994443
No 131
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.18 E-value=0.0018 Score=67.41 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=44.1
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
..++|--|+|.+||||.-.+ +..|... .|+++++. +.|+-.-+. ...++.++ ..+...+..++-++
T Consensus 4 ~v~sGiqPSG~~HLGnylG~-----ik~wv~lq~~~~~~~~--IADlHAlt~-----~~~d~~~i-r~~~~~~~a~~lA~ 70 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGV-----LKNWVKLQHEYECFFF--VADWHALTT-----HYETPEVI-EKNVWDMVIDWLAA 70 (398)
T ss_pred EEEEEeCCCCcchHHHHHHH-----HHHHHHHhcCCcEEEE--eecHHHHhC-----CCCCHHHH-HHHHHHHHHHHHHc
Confidence 46778999999999995554 3465554 57776543 333322111 01245444 34667789999999
Q ss_pred CCCC
Q 009321 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 71 GlDP 74 (398)
T PRK12283 71 GVDP 74 (398)
T ss_pred CCCc
Confidence 9984
No 132
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0021 Score=70.13 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (537)
Q Consensus 37 ~~~v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~ 97 (537)
.++-+++++-|-|| |.+|+||+.+.--.|+..-|.|.+|++|.|..|....|-+|.+.|.+
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdK 103 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADK 103 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHH
Confidence 45778999999999 99999999999999999999999999999999998888776665543
No 133
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=97.12 E-value=0.00079 Score=74.95 Aligned_cols=87 Identities=8% Similarity=-0.004 Sum_probs=47.9
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
...+|--|+|.+||||. ++.=+-.+.+...|++|++.. .|+-.-+ -...|.+...+.. +...+..++.++|
T Consensus 34 rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lI--AD~HAlt---~~~~~~~l~~i~~-~~~~~~~~~lA~G 104 (682)
T PTZ00348 34 RCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWV--ADWFALM---NDKVGGELEKIRI-VGRYLIEVWKAAG 104 (682)
T ss_pred EEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEE--cchhhhc---CCCCCCCHHHHHH-HHHHHHHHHHHcC
Confidence 46778899999999992 222111222335799987653 2322211 0122334444332 2345677889999
Q ss_pred CCCC-CCccchhhhHHH
Q 009321 122 CLPP-TYQPRVSDHMEQ 137 (537)
Q Consensus 122 i~~~-~~~~r~s~~~~~ 137 (537)
+.+. ..+.+.|+++..
T Consensus 105 lDpeK~~~~~qSd~i~e 121 (682)
T PTZ00348 105 MDMDKVLFLWSSEEITN 121 (682)
T ss_pred CCccceEEEECcHhhhh
Confidence 9843 235566665544
No 134
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0028 Score=67.49 Aligned_cols=97 Identities=27% Similarity=0.291 Sum_probs=67.4
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
+|+|.-=. +|-|+|.+||||+-..-+-==+++ +.| -|-|+. .|| ..|+.=.++|-..+.+.
T Consensus 246 GGkV~TRF-PPEPNG~LHIGHaKAInvNFgyAk---~~~-G~cyLR-fDD-------------TNPEkEee~yf~sI~e~ 306 (764)
T KOG1148|consen 246 GGKVVTRF-PPEPNGILHIGHAKAINVNFGYAK---AHG-GVCYLR-FDD-------------TNPEKEEEEYFESIKEM 306 (764)
T ss_pred CCeeEEeC-CCCCCceeeecchhheeechhhhh---hhC-CeEEEe-cCC-------------CCcchhhHHHHHHHHHH
Confidence 45544333 588999999999875422111222 111 122322 233 34566677899999999
Q ss_pred HHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceee
Q 009321 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV 153 (537)
Q Consensus 117 l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~ 153 (537)
.++||.. |-.....|+|.+++-++...|+.+|+||.
T Consensus 307 V~WLG~~-P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 307 VAWLGFE-PYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred HHHhCCC-ceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 9999998 45566778999999999999999999994
No 135
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.82 E-value=0.0029 Score=66.29 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=26.6
Q ss_pred eEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEEC
Q 009321 41 GMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (537)
Q Consensus 41 ~~y~~gPt~yg-~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~ 82 (537)
....||--|+| .+||||+-+ .-.+++ +...|++|.++.
T Consensus 31 ~~vy~G~dPTg~~lHlGh~v~---l~~l~~-lq~~G~~~~ili 69 (377)
T TIGR00234 31 IKLYVGFDPTAPSLHLGHLVP---LLKLRD-FQQAGHEVIVLL 69 (377)
T ss_pred CEEEEeeCCCCCCccHHHHHH---HHHHHH-HHHCCCcEEEEE
Confidence 35567888888 899999543 333444 445799998775
No 136
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.56 E-value=0.0027 Score=65.47 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=41.6
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
...+|--|+|.+||||.-..+. -+.++.+ +++|.++. .|+-.-+- ..++++ ...+...+..++-++|
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~I--aD~ha~t~------~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCI--ADLHALTV------PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEE--ecHHHHhC------CCCHHH-HHHHHHHHHHHHHeEc
Confidence 3566788889999999654432 1333333 37777654 33322111 124443 3446677888888999
Q ss_pred CCC
Q 009321 122 CLP 124 (537)
Q Consensus 122 i~~ 124 (537)
+.+
T Consensus 70 lDp 72 (333)
T PRK00927 70 IDP 72 (333)
T ss_pred cCh
Confidence 974
No 137
>PLN02886 aminoacyl-tRNA ligase
Probab=96.47 E-value=0.065 Score=56.05 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=43.4
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
..++|--|+|.+||||.-.++ ..+.++ .|++++|. |.|+-.-+ ...+++++. .+..++..++-++
T Consensus 48 ~v~sGiqPSG~lHLGnylGai-----~~~v~lQ~~~~~~~~--IADlHAlt------~~~~~~~lr-~~~~~~~a~~lA~ 113 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI-----KNWVALQETYDTFFC--VVDLHAIT------LPHDPRELG-KATRSTAAIYLAC 113 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH-----HHHHHHhccCCEEEE--EecHHHhh------CCCCHHHHH-HHHHHHHHHHHHc
Confidence 577889999999999954442 333333 38887543 33333221 123555544 4556688899999
Q ss_pred CCCC
Q 009321 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 114 GlDP 117 (389)
T PLN02886 114 GIDP 117 (389)
T ss_pred CcCc
Confidence 9984
No 138
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.018 Score=60.54 Aligned_cols=52 Identities=48% Similarity=0.670 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhHhHHHHHHhHhCCCEEEecCCceEEEeCCcc
Q 009321 462 EEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLV 513 (537)
Q Consensus 462 ~~~i~~li~~R~~aR~~Kdf~~aD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~ 513 (537)
-+++.+..++|..|+++|+++.+|++|.+++..||.++|.|.++.|+..-|+
T Consensus 525 ~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys 576 (586)
T KOG2007|consen 525 REELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYS 576 (586)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhccccccc
Confidence 3456777888889999999999999999999999999999999999985443
No 139
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=0.41 Score=43.51 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=55.8
Q ss_pred HHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHH
Q 009321 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQII 146 (537)
Q Consensus 67 l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~ 146 (537)
|+|+||..||++.|.++.. |++|+.-|..+|.=. ++. =..-+... ++|+. .++.+..+..+++.+++.++-
T Consensus 18 LARwLRllGydt~~~~~~~--d~~i~~i~~~e~rIl--lTR-Dr~L~~r~--k~g~~--~i~i~~~s~~~Ql~e~~~~~~ 88 (165)
T COG1656 18 LARWLRLLGYDTVYSSNES--DDEIILIAKKEGRIL--LTR-DRELYKRA--KLGIK--AILIRSDSIEEQLAEFLARLG 88 (165)
T ss_pred HHHHHHHcCCceeeeccCC--cHHHHHHHhcCCeEE--Eec-cHHHHHHh--hccCc--eEEEeCCCHHHHHHHHHHHhc
Confidence 8999999999999998444 356666666655311 000 01112222 56664 567776777888889988886
Q ss_pred HCCceeeeccceeecCCCCCCCCC
Q 009321 147 NNDCAYVVEGDVFFAVEKSPNYGR 170 (537)
Q Consensus 147 ~kG~ay~~~~~v~f~~~~~~~yg~ 170 (537)
.++. .....+.||.|+.
T Consensus 89 l~~~-------~~~e~~RCp~CN~ 105 (165)
T COG1656 89 LKPR-------LFPEFSRCPECNG 105 (165)
T ss_pred cchh-------cccccccCcccCC
Confidence 6542 2223467999985
No 140
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=77.40 E-value=2.9 Score=37.75 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=27.0
Q ss_pred HHHHHHHCCCceEEECCcchhhHHHHHHHHHcCC
Q 009321 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE 100 (537)
Q Consensus 67 l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~ 100 (537)
++|+||..||+|.++.+++| ..|+..|.++|.
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D--~~il~~A~~e~R 43 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDD--DEILELAREEGR 43 (147)
T ss_pred HHHHHHHCCCcEEEeCCCCh--HHHHHHhhhCCe
Confidence 79999999999999997754 557888888775
No 141
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=67.25 E-value=11 Score=25.27 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHhHh
Q 009321 464 DVLQLIEERAAARKNKDFSKSDQIRADLTR 493 (537)
Q Consensus 464 ~i~~li~~R~~aR~~Kdf~~aD~IRd~L~~ 493 (537)
.|..|-..-..|-++-||+.|=.|||.+..
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~ 32 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKA 32 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 455666677788889999999999999765
No 142
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=66.24 E-value=37 Score=38.60 Aligned_cols=98 Identities=6% Similarity=0.009 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcCccccC---C-----CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHh
Q 009321 332 VFYIYQTLQDCEVALSPFQEH---G-----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (537)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~-----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~ 403 (537)
...+..++.|+..++.+.... . ...+.++.|...+..+...+..++ ..-++..++.. |.+|...++.|++
T Consensus 568 ~~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 645 (682)
T PRK01233 568 FKALAAANKRVSNILKKAEGKVSGEVDPALFEEPAEKALYAALEELKPKVEPAL-AAGDYQAALEA-LAALRPPVDAFFD 645 (682)
T ss_pred HHHHHHHHHHHHHHHhccccccCCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHhhhhHHHHHhC
Confidence 446666777877777654311 0 113345667777777777777777 55588999999 9999999999999
Q ss_pred hhcccCc-hhhhHHHHHHHHHHHHHHHHH
Q 009321 404 MLKKKQP-KQQQLSLIESLRKIENEVKEV 431 (537)
Q Consensus 404 ~~~~~~~-~~~~~~~~~~l~~~~~~l~~~ 431 (537)
...+-.. .+-...|+.++..+...+..+
T Consensus 646 ~VmVm~~d~~iR~NRL~LL~~i~~~f~~i 674 (682)
T PRK01233 646 NVMVMAEDEALRANRLALLASLRELFLRV 674 (682)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8766433 223445666666555544443
No 143
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=65.38 E-value=22 Score=37.57 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhh---------------HHHHHHHHHcCCC---hHHH
Q 009321 46 GVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD---------------DKIIRRANDLGEN---PLSL 105 (537)
Q Consensus 46 gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d---------------~ki~~~a~~~g~~---~~~~ 105 (537)
||+|. |.+|++|++.+- +-+=..|-.+.|+| ..|...+++.|.+ ..++
T Consensus 41 ~~~v~icGD~Hl~NFG~~~------------~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~ 108 (385)
T PF10009_consen 41 GPPVWICGDAHLENFGAFA------------SPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKA 108 (385)
T ss_pred CCceEEeccchhhccCccc------------CCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34444 999999999872 33333444455554 3678888888886 5678
Q ss_pred HHHHHHHHHHHHHHcCCCCC-CCc-cchhhhHHHHHHHHHHHHHC
Q 009321 106 SNRYCQEYLVDMADLQCLPP-TYQ-PRVSDHMEQIKDMITQIINN 148 (537)
Q Consensus 106 ~~~~~~~~~~~l~~L~i~~~-~~~-~r~s~~~~~~~~~~~~L~~k 148 (537)
++.+.+.|.+.|..+.=... +.+ .........+..++++..++
T Consensus 109 ~~~~~~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 109 VRAFLEGYREALADYAGMDPLDVWYFTPDNASGPVRKALKKARKR 153 (385)
T ss_pred HHHHHHHHHHHHHHhcCCChhhceecCchhhHHHHHHHHHHHHHh
Confidence 88899999998888754421 112 11123334455555555554
No 144
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=61.12 E-value=55 Score=38.71 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCccccCC-----CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhc
Q 009321 332 VFYIYQTLQDCEVALSPFQEHG-----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (537)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~ 406 (537)
...+..++.|+..++.+..... ...+.++.|...+..+...+... .-++..++.. |.+|...++.|++...
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~---~~dy~~al~~-La~L~~~Id~FFD~Vm 968 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFSVTDASLLLEPAELNLKQALDAFREELTEL---PIDLKDYVAA-AAELPQAVNTFFDEVL 968 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccChhhcCCHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHH-HHhhhhHHHHHhCCCE
Confidence 4467777888888776643211 11233455555555554444443 2266888888 9999999999999877
Q ss_pred ccCc-hhhhHHHHHHHHHHHHHHHHH
Q 009321 407 KKQP-KQQQLSLIESLRKIENEVKEV 431 (537)
Q Consensus 407 ~~~~-~~~~~~~~~~l~~~~~~l~~~ 431 (537)
+-.. .+-...|+.++..+...+..+
T Consensus 969 Vm~eD~~iR~NRLaLL~~i~~lf~~v 994 (1000)
T PRK14908 969 VMADDEAIRNARLGLLAAIRDLKFGV 994 (1000)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 6433 223455676666665554443
No 145
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=60.57 E-value=50 Score=37.61 Aligned_cols=98 Identities=6% Similarity=-0.027 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhcCccccC---CC-----CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHh
Q 009321 332 VFYIYQTLQDCEVALSPFQEH---GK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (537)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~~-----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~ 403 (537)
...+..++.|+..++.+.... .. ..+.++.|...+..+...+...+ ..-++..++.. |.+|...++.|++
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 655 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESF-ESGDYETALEA-LAELRAPVDEFFD 655 (691)
T ss_pred HHHHHHHHHHHHHHHhcccccccCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHHhhhHHHHHhC
Confidence 456667778888877664311 00 12345566666766666667666 44478889999 9999999999999
Q ss_pred hhcccCc-hhhhHHHHHHHHHHHHHHHHH
Q 009321 404 MLKKKQP-KQQQLSLIESLRKIENEVKEV 431 (537)
Q Consensus 404 ~~~~~~~-~~~~~~~~~~l~~~~~~l~~~ 431 (537)
...+-.. .+-...|+.++..+...+..+
T Consensus 656 ~VmVm~~d~~iR~NRL~LL~~i~~lf~~i 684 (691)
T TIGR00211 656 SVMVMADDIELRQNRLNFLWGLRQLFLEV 684 (691)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8776433 223445676666665555443
No 146
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=59.92 E-value=39 Score=34.43 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=49.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHCCCceEEE------CCcchhhHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHHc
Q 009321 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYV------RNFTDVDDKIIRRAND-LGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 51 g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v------~~idd~d~ki~~~a~~-~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
|+--+--+.--..+|+|+|-|+..|.+|.-+ +++.+ -+++..++++ -+..+++..+.|-++|.+++...
T Consensus 176 g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~-~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~ 251 (322)
T KOG1610|consen 176 GPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN-PEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKS 251 (322)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3333344555668999999999999999854 45665 4666666655 35677888888888888777663
No 147
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.74 E-value=10 Score=37.83 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=47.8
Q ss_pred CCcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 37 ~~~v~~y~~gPt~y-g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
.|+.-+..+|-.|+ +.+||||.-+++ +..||... ++|-.|..+||- .|.+-+- ++. +=+..|..+-.+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFi----ftKwlQe~-F~vpLVIqlTDD-EKflwK~----l~~-eda~~~arENaK 150 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFI----FTKWLQDV-FDVPLVIQLTDD-EKFLWKD----LTL-EDAKKYARENAK 150 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHH----HHHHHHHH-hCCceEEEeccc-HHHHHhh----CcH-HHHHHHHHhccc
Confidence 45666667777776 999999999987 55666543 678888888874 3333221 222 223445555555
Q ss_pred HHHHcCCC
Q 009321 116 DMADLQCL 123 (537)
Q Consensus 116 ~l~~L~i~ 123 (537)
|.-++|..
T Consensus 151 DIia~GFD 158 (397)
T KOG2145|consen 151 DIIAVGFD 158 (397)
T ss_pred ceEEeccC
Confidence 66666665
No 148
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=56.89 E-value=54 Score=36.95 Aligned_cols=95 Identities=7% Similarity=0.052 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCcccc---CC-----CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhh
Q 009321 334 YIYQTLQDCEVALSPFQE---HG-----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML 405 (537)
Q Consensus 334 ~l~~~~~~~~~~l~~~~~---~~-----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~ 405 (537)
.+..++.|+..++.+... .. ...+.++.+...+..+...+.+++ ..-++..|+.. |.+|...+..|++..
T Consensus 579 ~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~-a~~~y~~al~~-L~~L~~pId~FFd~V 656 (691)
T COG0751 579 ALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEAL-AEKDYQDALAA-LAELRPPIDEFFDNV 656 (691)
T ss_pred HHHHHHHHHHHHHHhcccccCCccChHHhcCHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHH-HHHhhhhHHHHhcCc
Confidence 455666777777765432 11 113345667778888888888888 66788999999 999999999999887
Q ss_pred cccCc-hhhhHHHHHHHHHHHHHHHH
Q 009321 406 KKKQP-KQQQLSLIESLRKIENEVKE 430 (537)
Q Consensus 406 ~~~~~-~~~~~~~~~~l~~~~~~l~~ 430 (537)
.+-.. .+-...|++++..+...+..
T Consensus 657 mVm~eD~~iR~NRLalL~~l~~~f~~ 682 (691)
T COG0751 657 MVMAEDEALRNNRLALLSKLRELFLK 682 (691)
T ss_pred eeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 65432 22234466655555444443
No 149
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=51.98 E-value=6.8 Score=39.01 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=39.4
Q ss_pred ceEEEeCCCCCCCCCcchhhHHH-HHHHHHHHHHHCCCceEEEC--------CcchhhHHHHHHHHHcCCChHHHHHHHH
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAV-SFDLLYRYLEHLKCEVTYVR--------NFTDVDDKIIRRANDLGENPLSLSNRYC 110 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v-~~D~l~R~lr~~G~~V~~v~--------~idd~d~ki~~~a~~~g~~~~~~~~~~~ 110 (537)
.++|- |--|+|.+|||-+-+.. ++|++ ..|.+|+... |.--=+.++ +.-+..|.
T Consensus 35 l~~Yw-GtaptGrpHiay~vpm~kiadfl-----kAGC~VtIl~AD~hA~LdNmkap~e~~-----------~~rv~yYe 97 (360)
T KOG2144|consen 35 LKCYW-GTAPTGRPHIAYFVPMMKIADFL-----KAGCEVTILFADLHAFLDNMKAPDELV-----------IRRVGYYE 97 (360)
T ss_pred ceeee-cCCCCCCcceeeeeehhHHHHHH-----hcCCeEEEEehHHHHHHhcccchHHHH-----------HHHHHHHH
Confidence 34443 55578999999854332 34433 3588888442 111112222 23345688
Q ss_pred HHHHHHHHHcCCC
Q 009321 111 QEYLVDMADLQCL 123 (537)
Q Consensus 111 ~~~~~~l~~L~i~ 123 (537)
..+...+..+|+.
T Consensus 98 ~~Ik~~l~~~nv~ 110 (360)
T KOG2144|consen 98 KEIKAALGSINVP 110 (360)
T ss_pred HHHHHHHhhcCCc
Confidence 8888888888875
No 150
>PRK13671 hypothetical protein; Provisional
Probab=48.84 E-value=78 Score=32.17 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHCCCc-eEEECCcchh--h-----HH--HHHHHHHcCCC-----h----HHHHHHH
Q 009321 49 AYDLSHLGHARAAVSFDLLYRYLEHLKCE-VTYVRNFTDV--D-----DK--IIRRANDLGEN-----P----LSLSNRY 109 (537)
Q Consensus 49 ~yg~lHiGh~r~~v~~D~l~R~lr~~G~~-V~~v~~idd~--d-----~k--i~~~a~~~g~~-----~----~~~~~~~ 109 (537)
-|+|+|.||++- +....+..|.+ |.+|+.-+-. + ++ =..-|.+.|.+ | -.-|+.|
T Consensus 8 eFNP~H~GHl~~------~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 8 EYNPFHNGHIYQ------INYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred eeCCccHHHHHH------HHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHH
Confidence 469999999875 34555555554 4555522211 1 01 12334556876 2 3456778
Q ss_pred HHHHHHHHHHcCCC
Q 009321 110 CQEYLVDMADLQCL 123 (537)
Q Consensus 110 ~~~~~~~l~~L~i~ 123 (537)
...=...|..|||.
T Consensus 82 A~gaV~lL~~lgvd 95 (298)
T PRK13671 82 AKGAIKKLNKEKID 95 (298)
T ss_pred HHHHHHHHHHcCCC
Confidence 88888999999975
No 151
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=44.74 E-value=34 Score=28.23 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=24.9
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceE
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVT 79 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~ 79 (537)
+|++||.. |.+ -.+.-.++-.++.|+..|+.|.
T Consensus 1 iYIaGPmt-G~~----~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 1 IYIAGPMT-GLP----DYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred CeEeCCcC-CCc----chHHHHHHHHHHHHHHCCCEEe
Confidence 58999954 544 3345677889999999998887
No 152
>PLN02413 choline-phosphate cytidylyltransferase
Probab=42.56 E-value=26 Score=35.08 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=26.6
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCc
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNF 84 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~i 84 (537)
.+..+++|+.| +++-+|.||++.. .+ .+..|-.+..|.|+
T Consensus 24 ~~r~~rVyvdG--~FDLfH~GHir~L------~q-AK~lg~~d~LIVGV 63 (294)
T PLN02413 24 SDRPVRVYADG--IYDLFHFGHARSL------EQ-AKKLFPNTYLLVGC 63 (294)
T ss_pred CCCceEEEEeC--chhhCCHHHHHHH------HH-HHHhCCCCEEEEEe
Confidence 44677888886 6899999999864 22 24445445556555
No 153
>PLN02200 adenylate kinase family protein
Probab=40.93 E-value=79 Score=30.78 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.3
Q ss_pred CCCCCceeeeecCCCCccccc-----cCCCCcceEEEeCCCCCCCCCcc
Q 009321 13 PKMDLTLKIYNSMTQQKELFT-----PIVRGKVGMYVCGVTAYDLSHLG 56 (537)
Q Consensus 13 ~~~~~~l~~~ntl~~~~~~~~-----p~~~~~v~~y~~gPt~yg~lHiG 56 (537)
.+.+.+|+++|+.+.+...+. |.......++++||.=.|.-.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a 60 (234)
T PLN02200 12 SQAASGLKIWESFSTEIITLEERGSSSKEKTPFITFVLGGPGSGKGTQC 60 (234)
T ss_pred HHHhhhheecccccccccccccccCCccCCCCEEEEEECCCCCCHHHHH
Confidence 345568999999999754442 22223467889999877765554
No 154
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=38.03 E-value=16 Score=36.62 Aligned_cols=40 Identities=30% Similarity=0.342 Sum_probs=28.4
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcc
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~id 85 (537)
+..|++|.-| +|+-.|.||||....+ -.. =-+|..+.|+.
T Consensus 61 ~RPVRVYADG--IyDLFH~GHarqL~Qa------K~~-FPNvyLiVGvc 100 (348)
T KOG2804|consen 61 DRPVRVYADG--IYDLFHYGHARQLEQA------KKL-FPNVYLIVGVC 100 (348)
T ss_pred CCceEEEccc--hHHHhhhhHHHHHHHH------HHh-CCCeEEEEeec
Confidence 4579999997 7899999999986433 122 23477777654
No 155
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=36.55 E-value=18 Score=30.28 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.7
Q ss_pred eCCCCCCCCCcchhhH
Q 009321 45 CGVTAYDLSHLGHARA 60 (537)
Q Consensus 45 ~gPt~yg~lHiGh~r~ 60 (537)
.|.++ |++|+||..-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 36667 9999999763
No 156
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.30 E-value=52 Score=34.41 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=28.9
Q ss_pred EEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEECC--cchhhHH
Q 009321 42 MYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN--FTDVDDK 90 (537)
Q Consensus 42 ~y~~gPt~y-g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~--idd~d~k 90 (537)
-..||--|+ ..+|+||+-..+. +.++ ...|++++-+.| +.-+||+
T Consensus 65 ~vYcGfDPTA~SLHvGNLl~lm~---L~hf-qr~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 65 YVYCGFDPTAESLHVGNLLALMV---LIHF-QRAGHRPIALIGGATASVGDP 112 (467)
T ss_pred eEEecCCCcHHhhhhcchHHHHH---HHHH-HHcCCCceEEeccccccccCC
Confidence 356787777 8899999765542 3333 347999886654 3345553
No 157
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=34.92 E-value=1.4e+02 Score=24.47 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=42.3
Q ss_pred EECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchh-hhHHHHHHHHHHHHH
Q 009321 80 YVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMITQIIN 147 (537)
Q Consensus 80 ~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s-~~~~~~~~~~~~L~~ 147 (537)
...|...+.++|+..|++.|++.++ -....+.|..|.+. +..|... +-+.++..|+.++-+
T Consensus 26 vA~G~G~iAe~II~~Ake~~Vpi~e-----dp~Lv~~L~~lelg--~~IPeelY~vVAEifafi~~~~~ 87 (92)
T COG2257 26 VASGKGEIAEKIIEKAKEHGVPIQE-----DPLLVELLLKLELG--DEIPEELYEVVAEIFAFIYEVDN 87 (92)
T ss_pred EeecchHHHHHHHHHHHHcCCCccc-----CHHHHHHHHhcccc--ccCCHHHHHHHHHHHHHHHHHHc
Confidence 4457888899999999999998754 34566778888875 4455433 455566666665543
No 158
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=34.60 E-value=81 Score=32.10 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=44.3
Q ss_pred HHHHHHHHHHCCCceE--EECCcchhhHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHH
Q 009321 64 FDLLYRYLEHLKCEVT--YVRNFTDVDDKIIRRANDLG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKD 140 (537)
Q Consensus 64 ~D~l~R~lr~~G~~V~--~v~~idd~d~ki~~~a~~~g-~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~ 140 (537)
.-+-++.|+.+||+|+ |..|+++.|+. | .-| +++=.+.-....+.|||.. +..--+.||...+-+
T Consensus 18 SsVaa~Ll~~~g~~v~gv~M~nWd~~de~--------~s~cp---~e~D~~da~~Vc~~LnI~~-~~Vnf~kEYW~~Vfs 85 (377)
T KOG2805|consen 18 SSVAARLLAARGYNVTGVFMKNWDSLDEF--------GSQCP---AERDWKDAKRVCKQLNIPL-HQVNFVKEYWNDVFS 85 (377)
T ss_pred HHHHHHHHHhcCCCeeEEeeecccccccc--------ccCCC---chhhHHHHHHHHHHhCCee-EEEeeHHHHHHHHHH
Confidence 3456788899999999 66788777642 1 111 1111122344566777763 333334467766666
Q ss_pred HHHHHHHCCc
Q 009321 141 MITQIINNDC 150 (537)
Q Consensus 141 ~~~~L~~kG~ 150 (537)
-+.+.+++|.
T Consensus 86 ~~L~~Y~~G~ 95 (377)
T KOG2805|consen 86 PFLEEYENGR 95 (377)
T ss_pred HHHHHHhcCC
Confidence 6666777666
No 159
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=34.27 E-value=38 Score=29.34 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=21.6
Q ss_pred cchhhHHHHHHHHHHHHHHCCCceEEECC
Q 009321 55 LGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (537)
Q Consensus 55 iGh~r~~v~~D~l~R~lr~~G~~V~~v~~ 83 (537)
-||+.+++ .+++.|+.+|++|.+...
T Consensus 9 ~Ghv~P~l---ala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 9 RGHVYPFL---ALARALRRRGHEVRLATP 34 (139)
T ss_dssp HHHHHHHH---HHHHHHHHTT-EEEEEET
T ss_pred hhHHHHHH---HHHHHHhccCCeEEEeec
Confidence 59999887 699999999999996665
No 160
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.89 E-value=1.3e+02 Score=26.44 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHH
Q 009321 62 VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDM 141 (537)
Q Consensus 62 v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~ 141 (537)
+-.++++++|+..|++|.+........ .+...|.+.+.+ -++|+. ..+.|.+.+.++
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~~s~e-~~v~aa~e~~ad-----------------ii~iSs-----l~~~~~~~~~~~ 73 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLFQTPE-EIARQAVEADVH-----------------VVGVSS-----LAGGHLTLVPAL 73 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCHH-HHHHHHHHcCCC-----------------EEEEcC-----chhhhHHHHHHH
Confidence 557889999999999999877654333 344455444332 222221 113566666666
Q ss_pred HHHHHHCCc
Q 009321 142 ITQIINNDC 150 (537)
Q Consensus 142 ~~~L~~kG~ 150 (537)
++.|.++|.
T Consensus 74 ~~~L~~~g~ 82 (132)
T TIGR00640 74 RKELDKLGR 82 (132)
T ss_pred HHHHHhcCC
Confidence 666666653
No 161
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.83 E-value=79 Score=31.72 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=41.2
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
.+.+++|.-|+|.+||||.-.++--.+=---....|-.|.|.. -|+- |.-.+.+|.. -++..-.....+-+
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~v--vDlH------aITvp~dp~~-lrq~~~dm~A~lLA 83 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSV--VDLH------AITVPQDPAE-LRQATHDMAASLLA 83 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEE--eece------eecCCCChHH-HHHHHHHHHHHHHH
Confidence 4678999999999999996655433332222223444444432 2221 1112233442 23344555666777
Q ss_pred cCCCC
Q 009321 120 LQCLP 124 (537)
Q Consensus 120 L~i~~ 124 (537)
.||.+
T Consensus 84 cGIdp 88 (347)
T KOG2713|consen 84 CGIDP 88 (347)
T ss_pred hccCc
Confidence 88874
No 162
>PRK09620 hypothetical protein; Provisional
Probab=28.28 E-value=82 Score=30.66 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=36.9
Q ss_pred CcceEEEeCCCCC---CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcc
Q 009321 38 GKVGMYVCGVTAY---DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (537)
Q Consensus 38 ~~v~~y~~gPt~y---g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~id 85 (537)
|+.-+.++|||.= ..=.|+|..+--+|--+++.|..+|++|+++.|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4445566688743 34578887777888889999999999999998764
No 163
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=26.65 E-value=2.2e+02 Score=27.47 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=62.5
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
+..||-+.++.+=+-|+.++ +..+++-.+..|.||.--. ++ +-.+.|.+.+.+.++.+|
T Consensus 4 L~Ls~~~~~~~~~~~~~~~~-----i~n~l~g~~~~i~FIPtAs--------------~~--~~~~~Yv~k~~~~l~~lg 62 (224)
T COG3340 4 LLLSSSTFSFEDVLEHFLPF-----IANFLQGKRKTIAFIPTAS--------------VD--SEDDFYVEKVRNALAKLG 62 (224)
T ss_pred EEecCCCcccchhhhhhhHH-----HHHHhcCCCceEEEEecCc--------------cc--cchHHHHHHHHHHHHHcC
Confidence 45566566666556666555 5666665567888886422 11 011559999999999999
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC
Q 009321 122 CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (537)
Q Consensus 122 i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~ 164 (537)
+. ++..++.+.+.+.+ -..|.+...+|...|..++-...
T Consensus 63 ~~-v~~L~l~~~~~~~I---e~~l~~~d~IyVgGGNTF~LL~~ 101 (224)
T COG3340 63 LE-VSELHLSKPPLAAI---ENKLMKADIIYVGGGNTFNLLQE 101 (224)
T ss_pred Ce-eeeeeccCCCHHHH---HHhhhhccEEEECCchHHHHHHH
Confidence 98 45566655555443 35677788888877766654433
No 164
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.22 E-value=75 Score=27.13 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHcCCCCCCCccc---hhhhHHHHHHHHHHHHH-CCceeeec----cceeecCCCCCCCCC
Q 009321 114 LVDMADLQCLPPTYQPR---VSDHMEQIKDMITQIIN-NDCAYVVE----GDVFFAVEKSPNYGR 170 (537)
Q Consensus 114 ~~~l~~L~i~~~~~~~r---~s~~~~~~~~~~~~L~~-kG~ay~~~----~~v~f~~~~~~~yg~ 170 (537)
...++.||.+..-.+.. +..+-+.+-.+|..+++ ||++|... .++++|...++.|++
T Consensus 23 l~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~~glvcl~~~g~~~e 87 (119)
T COG3171 23 LGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDWEGLVCLQRIGKCDE 87 (119)
T ss_pred HHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceeeeeeehHhhcCCccH
Confidence 34456677664333444 23455667777887776 49999653 356667666666664
No 165
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=24.49 E-value=3e+02 Score=20.43 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCCCCCccchhh-------hHHHHHHHHHHHHHCCceeeeccceee
Q 009321 109 YCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFF 160 (537)
Q Consensus 109 ~~~~~~~~l~~L~i~~~~~~~r~s~-------~~~~~~~~~~~L~~kG~ay~~~~~v~f 160 (537)
-.+.+.+.+..-.+.+.+.+|...+ ....+.+.+..|.+.|+++...+..+|
T Consensus 5 i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~~ 63 (64)
T PF00392_consen 5 IYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPGRGTF 63 (64)
T ss_dssp HHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCceEE
Confidence 3344455555545544455544432 345688999999999999988777765
No 166
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=23.77 E-value=98 Score=32.30 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=29.3
Q ss_pred cCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcch
Q 009321 34 PIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD 86 (537)
Q Consensus 34 p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd 86 (537)
|..++.+++|+.| .++-+|+||++-. |..+..|..+++-.+.|+
T Consensus 6 ~~~~~~~~v~~~G--~FD~vH~GH~~~L-------~qAk~~g~~Livgv~~d~ 49 (353)
T PTZ00308 6 PKKPGTIRVWVDG--CFDMLHFGHANAL-------RQARALGDELFVGCHSDE 49 (353)
T ss_pred CCCCCcEEEEEEe--ecccCCHHHHHHH-------HHHHHhCCEEEEEeCCHH
Confidence 3456778888886 6799999998743 333445666655555543
No 167
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.86 E-value=1.5e+02 Score=27.90 Aligned_cols=86 Identities=19% Similarity=0.031 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccc-----hh
Q 009321 58 ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPR-----VS 132 (537)
Q Consensus 58 ~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r-----~s 132 (537)
+++.|.-|+|...|+..||.|.+-.+. +. .+.+|.++.+ ...+..+.++.+-..+-+.-.| .|
T Consensus 85 a~p~Vp~~vl~daLk~~GyrVevr~~~--l~---------T~ap~~ev~E-~vreLse~~~E~~~~~lt~~vrklVv~~S 152 (204)
T COG3286 85 ASPNVPPDVLIDALKLLGYRVEVRGGE--LK---------TNAPWSEVVE-LVRELSEVYREARFQPLTRQVRKLVVAVS 152 (204)
T ss_pred hcCCCCHHHHHHHHHhCCceEEeeCce--ee---------cCCCHHHHHH-HHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 345578899999999999999987765 21 2345444332 2333333333333221110000 01
Q ss_pred -hhHHHHHHHHHHHHHCCceeeec
Q 009321 133 -DHMEQIKDMITQIINNDCAYVVE 155 (537)
Q Consensus 133 -~~~~~~~~~~~~L~~kG~ay~~~ 155 (537)
.+--..-+.++.+++.|++-+.+
T Consensus 153 ~~~~~~~dd~~eeave~Gll~e~E 176 (204)
T COG3286 153 IVYGLDPDDAAEEAVELGLLEEGE 176 (204)
T ss_pred hHhCCCHHHHHHHHHHhhhhhccc
Confidence 11122456788888999876543
No 168
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=22.34 E-value=70 Score=30.04 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=31.1
Q ss_pred cceEEEeCCCCC--CC-CCcchhhHHHHHHHHHHHHHHCCCceEEECCcch
Q 009321 39 KVGMYVCGVTAY--DL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD 86 (537)
Q Consensus 39 ~v~~y~~gPt~y--g~-lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd 86 (537)
+.-+.+.|||-= ++ ==|+|..+--.+-.|++.+..+|++|++|.|-..
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~ 54 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS 54 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 334555667633 33 3367777778889999999999999999998754
No 169
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.12 E-value=1.8e+02 Score=25.53 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHH
Q 009321 62 VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDM 141 (537)
Q Consensus 62 v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~ 141 (537)
+-.+++++.|+..||+|.+.-- +---..++..|.+.+ -+.++++. -.+.|.+.+.++
T Consensus 14 iGkniv~~~L~~~GfeVidLG~-~v~~e~~v~aa~~~~-----------------adiVglS~-----L~t~~~~~~~~~ 70 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNLGV-LSPQEEFIDAAIETD-----------------ADAILVSS-----LYGHGEIDCKGL 70 (128)
T ss_pred HHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcC-----------------CCEEEEec-----cccCCHHHHHHH
Confidence 3457899999999999987532 211123333333322 22334431 123566677777
Q ss_pred HHHHHHCCc
Q 009321 142 ITQIINNDC 150 (537)
Q Consensus 142 ~~~L~~kG~ 150 (537)
++.|.++|+
T Consensus 71 ~~~l~~~gl 79 (128)
T cd02072 71 REKCDEAGL 79 (128)
T ss_pred HHHHHHCCC
Confidence 777777776
No 170
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=21.33 E-value=1.3e+02 Score=27.20 Aligned_cols=19 Identities=53% Similarity=0.891 Sum_probs=15.2
Q ss_pred cceEEEeCCCCCCCCCcchhh
Q 009321 39 KVGMYVCGVTAYDLSHLGHAR 59 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r 59 (537)
.+++|++| .++.+|.||++
T Consensus 2 ~~rV~~~G--~FDl~H~GHi~ 20 (150)
T cd02174 2 PVRVYVDG--CFDLFHYGHAN 20 (150)
T ss_pred CeEEEEeC--ccCCCCHHHHH
Confidence 35788877 56999999976
No 171
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.31 E-value=48 Score=31.32 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.8
Q ss_pred eeeeeCCccccccCCC
Q 009321 274 GHVTNNNEKMSKSLGN 289 (537)
Q Consensus 274 g~v~~~G~KMSKS~Gn 289 (537)
.++.+||+|||+|+.-
T Consensus 30 DlLvvdG~K~SgsLlk 45 (216)
T COG3110 30 DLLVVDGKKVSGSLLK 45 (216)
T ss_pred cEEEecCccccccccc
Confidence 5788899999999775
No 172
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.88 E-value=1.4e+02 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=23.8
Q ss_pred hHHHHHHhHhCCCEEEecCCceEEEeCCcchh
Q 009321 484 SDQIRADLTRKGIALMDMGKETIWRPCVLVEQ 515 (537)
Q Consensus 484 aD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~~~ 515 (537)
.+++.+-|..+|+.++-..++..|+...|.-+
T Consensus 21 ~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R 52 (71)
T smart00874 21 AEEIEEILKRLGFEVEVSGDDDTLEVTVPSYR 52 (71)
T ss_pred HHHHHHHHHHCCCeEEecCCCCeEEEECCCCc
Confidence 46688899999999976544556887777553
No 173
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=20.79 E-value=5.4e+02 Score=22.28 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred CCceEEECCcchhhHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHHHHcCCCCCCCccc--hh----
Q 009321 75 KCEVTYVRNFTDVDDKIIRRANDLGEN----------------PLSLSNRYCQEYLVDMADLQCLPPTYQPR--VS---- 132 (537)
Q Consensus 75 G~~V~~v~~idd~d~ki~~~a~~~g~~----------------~~~~~~~~~~~~~~~l~~L~i~~~~~~~r--~s---- 132 (537)
+..++.|.-+.-++...+.+|-+.|.+ -...+++-.+...+.|+.+||.+ +..-- .+
T Consensus 28 ~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~-eRv~~~~~~~~~~ 106 (124)
T PF02662_consen 28 NVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEP-ERVRLYWISAPEG 106 (124)
T ss_pred CeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCh-hHeEEEEeCcccH
Confidence 455666777777777777777776643 24678888889999999999983 43211 11
Q ss_pred -hhHHHHHHHHHHHHHCC
Q 009321 133 -DHMEQIKDMITQIINND 149 (537)
Q Consensus 133 -~~~~~~~~~~~~L~~kG 149 (537)
...+.+.+|.++|.+-|
T Consensus 107 ~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 107 KRFAEIVNEFTERIKELG 124 (124)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 33455666666665543
No 174
>KOG0909 consensus Peptide:N-glycanase [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=1.9e+02 Score=30.79 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=37.4
Q ss_pred CCcceEEEe--CCCCC------CCCCcc---hhhHHHHHHHHHHHHHHCCCceEEECCcchh
Q 009321 37 RGKVGMYVC--GVTAY------DLSHLG---HARAAVSFDLLYRYLEHLKCEVTYVRNFTDV 87 (537)
Q Consensus 37 ~~~v~~y~~--gPt~y------g~lHiG---h~r~~v~~D~l~R~lr~~G~~V~~v~~idd~ 87 (537)
.++|-+|.| -+|-. ++.-|= -.|+-=.+.++.-++|..|+++.||.+.+||
T Consensus 189 a~rVEiy~C~~C~~~~RFPRYNdp~kLLeTRkGRCGEWANCFTllcralg~daR~i~d~tDH 250 (500)
T KOG0909|consen 189 AGRVEIYKCNRCGTETRFPRYNDPIKLLETRKGRCGEWANCFTLLCRALGLDARYIWDRTDH 250 (500)
T ss_pred CceEEEEEecCCCCcccCcccCCHHHHHhhccCccchHHHHHHHHHHHcCCcceEEeecCcc
Confidence 479999999 34333 433331 1344456788999999999999999999998
Done!