Query 009321
Match_columns 537
No_of_seqs 362 out of 2417
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 23:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 6E-118 2E-122 939.3 37.3 458 17-509 3-461 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 2E-114 6E-119 915.9 32.1 461 16-509 21-500 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 5E-107 2E-111 865.7 36.6 458 19-509 2-460 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.6E-84 8.8E-89 683.8 33.7 387 15-438 17-413 (414)
5 2csx_A Methionyl-tRNA syntheta 100.0 3.2E-63 1.1E-67 536.7 22.3 400 39-450 4-466 (497)
6 2d5b_A Methionyl-tRNA syntheta 100.0 1.4E-61 4.7E-66 524.7 23.7 400 41-450 4-467 (500)
7 3u1f_A Methionyl-tRNA syntheta 100.0 5.8E-60 2E-64 516.8 27.6 404 39-451 8-498 (542)
8 1rqg_A Methionyl-tRNA syntheta 100.0 1.6E-59 5.5E-64 525.4 27.7 406 42-451 6-520 (722)
9 4dlp_A Aminoacyl-tRNA syntheta 100.0 4.2E-59 1.4E-63 508.4 25.4 412 30-450 15-496 (536)
10 2x1l_A Methionyl-tRNA syntheta 100.0 2.6E-59 8.7E-64 509.4 23.0 406 37-450 9-489 (524)
11 3h99_A Methionyl-tRNA syntheta 100.0 6.7E-58 2.3E-62 501.4 29.2 411 33-450 11-519 (560)
12 3kfl_A Methionyl-tRNA syntheta 100.0 7.8E-58 2.7E-62 500.1 27.0 413 29-450 14-513 (564)
13 1iq0_A Arginyl-tRNA synthetase 100.0 2.8E-53 9.5E-58 465.6 17.3 382 39-440 104-589 (592)
14 2zue_A Arginyl-tRNA synthetase 100.0 1.1E-50 3.6E-55 446.4 20.0 383 36-440 117-626 (629)
15 1gax_A Valrs, valyl-tRNA synth 100.0 6.5E-47 2.2E-51 428.5 29.8 403 40-451 36-695 (862)
16 1f7u_A Arginyl-tRNA synthetase 100.0 5.3E-48 1.8E-52 422.0 18.8 360 36-440 141-604 (607)
17 1irx_A Lysyl-tRNA synthetase; 100.0 1E-47 3.4E-52 416.6 8.6 271 42-339 21-337 (523)
18 1ile_A Ilers, isoleucyl-tRNA s 100.0 2.1E-45 7.2E-50 418.0 23.9 407 38-452 36-771 (821)
19 1wkb_A Leucyl-tRNA synthetase; 100.0 2.1E-44 7.3E-49 410.0 30.4 205 235-450 602-809 (810)
20 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.2E-44 4.1E-49 413.3 28.2 410 38-451 46-772 (917)
21 4arc_A Leucine--tRNA ligase; l 100.0 1.8E-43 6.2E-48 399.1 29.2 407 30-451 42-797 (880)
22 1wz2_A Leucyl-tRNA synthetase; 100.0 3.7E-43 1.3E-47 404.6 28.9 206 235-451 602-810 (967)
23 2v0c_A Aminoacyl-tRNA syntheta 100.0 8.3E-42 2.8E-46 388.4 31.0 428 38-482 31-834 (878)
24 3fnr_A Arginyl-tRNA synthetase 100.0 2.8E-39 9.5E-44 342.4 28.5 356 36-440 28-451 (464)
25 3aii_A Glutamyl-tRNA synthetas 100.0 4E-35 1.4E-39 311.7 8.6 247 46-331 102-395 (553)
26 1qtq_A GLNRS, protein (glutami 100.0 3.4E-34 1.2E-38 304.6 12.3 251 45-330 31-332 (553)
27 2hz7_A Glutaminyl-tRNA synthet 100.0 1.8E-33 6.1E-38 310.9 10.9 259 37-330 61-372 (851)
28 2cfo_A Glutamyl-tRNA synthetas 100.0 9.9E-30 3.4E-34 270.5 12.4 238 46-327 7-296 (492)
29 1nzj_A Hypothetical protein YA 99.9 6.7E-28 2.3E-32 241.3 10.8 208 46-295 11-240 (298)
30 2o5r_A Glutamyl-tRNA synthetas 99.9 1.2E-20 4.1E-25 200.6 22.2 230 38-314 11-294 (481)
31 1j09_A Glutamyl-tRNA synthetas 99.8 1.1E-20 3.6E-25 200.0 16.7 235 46-327 7-291 (468)
32 4g6z_A Glutamate-tRNA ligase; 99.8 1.1E-19 3.6E-24 192.0 19.3 248 46-328 31-312 (490)
33 3afh_A Glutamyl-tRNA synthetas 99.8 1.3E-19 4.5E-24 192.3 19.6 230 46-326 31-301 (488)
34 3al0_C Glutamyl-tRNA(Gln) amid 99.8 1E-19 3.5E-24 197.4 18.2 225 39-315 129-392 (592)
35 2ja2_A Glutamyl-tRNA synthetas 99.7 1.2E-16 4E-21 169.7 19.9 248 46-326 12-304 (498)
36 4gri_A Glutamate--tRNA ligase; 99.7 1.3E-15 4.5E-20 163.5 20.2 248 46-328 30-322 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.7 1.6E-07 5.4E-12 95.1 15.5 69 236-312 170-239 (323)
38 2g36_A Tryptophanyl-tRNA synth 98.4 1.5E-06 5.2E-11 88.2 12.1 209 41-312 13-230 (340)
39 2dlc_X Tyrosyl-tRNA synthetase 98.1 8.3E-06 2.8E-10 84.5 10.5 69 235-311 181-252 (394)
40 2el7_A Tryptophanyl-tRNA synth 98.1 6.4E-05 2.2E-09 76.2 15.6 71 235-312 140-220 (337)
41 2cya_A Tyrosyl-tRNA synthetase 98.0 2E-05 6.7E-10 80.8 10.3 73 42-124 37-109 (364)
42 2zp1_A Tyrosyl-tRNA synthetase 98.0 1.8E-05 6.1E-10 79.5 9.7 81 41-135 29-109 (314)
43 1n3l_A Tyrosyl-tRNA synthetase 98.0 1.3E-05 4.5E-10 82.4 8.1 69 235-311 177-247 (372)
44 3hzr_A Tryptophanyl-tRNA synth 97.9 8.4E-05 2.9E-09 76.4 12.1 76 38-124 80-155 (386)
45 1y42_X Tyrosyl-tRNA synthetase 97.8 2.8E-05 9.7E-10 80.2 8.3 74 236-312 232-321 (392)
46 3tzl_A Tryptophanyl-tRNA synth 97.8 9.3E-06 3.2E-10 81.8 3.8 71 235-311 138-216 (322)
47 2jan_A Tyrosyl-tRNA synthetase 97.7 1.9E-05 6.4E-10 82.4 4.6 72 236-312 187-260 (432)
48 1yi8_B Tryptophanyl-tRNA synth 97.7 0.00062 2.1E-08 69.3 15.7 70 236-311 162-239 (351)
49 3vgj_A Tyrosyl-tRNA synthetase 97.7 0.0002 6.9E-09 73.4 12.0 69 236-311 200-272 (373)
50 1jil_A Tyrrs, tyrosyl-tRNA syn 97.7 2.9E-05 1E-09 80.9 5.3 72 236-312 186-259 (420)
51 1h3f_A Tyrosyl-tRNA synthetase 97.7 0.00011 3.6E-09 76.9 9.5 69 236-312 187-257 (432)
52 2cyc_A Tyrosyl-tRNA synthetase 97.5 0.00022 7.6E-09 73.2 9.1 71 235-311 179-276 (375)
53 2ts1_A Tyrosyl-tRNA synthetase 97.5 5.6E-05 1.9E-09 78.6 4.3 72 236-312 185-258 (419)
54 3i05_A Tryptophanyl-tRNA synth 97.5 0.00014 4.9E-09 74.9 7.3 76 38-124 76-152 (395)
55 3jxe_A Tryptophanyl-tRNA synth 97.5 0.00079 2.7E-08 69.3 12.3 74 39-124 73-147 (392)
56 1i6k_A TRPRS, tryptophanyl-tRN 97.4 0.00013 4.6E-09 73.6 6.2 79 42-134 3-83 (328)
57 3hv0_A Tryptophanyl-tRNA synth 97.4 0.00081 2.8E-08 69.3 12.0 77 38-124 72-149 (393)
58 2j5b_A Tyrosyl-tRNA synthetase 97.4 0.00046 1.6E-08 70.2 10.0 73 42-124 42-115 (348)
59 3tze_A Tryptophanyl-tRNA synth 97.3 0.00076 2.6E-08 69.7 9.8 76 38-124 99-175 (406)
60 2yy5_A Tryptophanyl-tRNA synth 97.3 0.00036 1.2E-08 70.9 7.1 80 42-135 6-87 (348)
61 3prh_A Tryptophanyl-tRNA synth 97.2 0.0045 1.5E-07 63.5 14.4 78 43-134 38-117 (388)
62 1r6t_A Tryptophanyl-tRNA synth 97.2 0.00042 1.4E-08 73.3 6.7 75 38-124 153-229 (477)
63 2ip1_A Tryptophanyl-tRNA synth 97.1 0.00077 2.6E-08 70.4 7.5 76 38-124 100-177 (432)
64 1r6u_A Tryptophanyl-tRNA synth 97.1 0.00083 2.8E-08 70.1 7.5 75 38-124 106-182 (437)
65 3p0j_A Tyrosyl-tRNA synthetase 97.0 0.00076 2.6E-08 74.4 6.9 85 41-136 41-128 (690)
66 3a04_A Tryptophanyl-tRNA synth 96.9 0.0042 1.4E-07 63.6 11.1 90 37-137 67-157 (372)
67 3n9i_A Tryptophanyl-tRNA synth 96.9 0.0046 1.6E-07 62.5 10.5 78 42-133 17-96 (346)
68 3foc_A Tryptophanyl-tRNA synth 96.8 0.0011 3.9E-08 69.1 5.5 77 38-124 89-166 (451)
69 3sz3_A Tryptophanyl-tRNA synth 96.3 0.0014 4.6E-08 66.3 2.6 80 42-134 8-88 (341)
70 2yxn_A Tyrosyl-tRNA synthetase 96.0 0.0027 9.1E-08 63.8 2.9 72 236-312 191-263 (322)
71 2pid_A Tyrosyl-tRNA synthetase 95.8 0.0032 1.1E-07 64.1 2.1 72 236-312 210-282 (356)
72 2pid_A Tyrosyl-tRNA synthetase 75.9 1.8 6E-05 43.8 3.8 38 41-82 47-85 (356)
73 2yxn_A Tyrosyl-tRNA synthetase 73.4 1.9 6.4E-05 42.9 3.2 39 41-83 34-73 (322)
74 3p0j_A Tyrosyl-tRNA synthetase 56.1 42 0.0014 36.8 9.9 80 46-134 388-468 (690)
75 3cuq_A Vacuolar-sorting protei 26.5 3.9E+02 0.013 24.8 11.2 93 424-517 40-154 (234)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=6e-118 Score=939.35 Aligned_cols=458 Identities=45% Similarity=0.752 Sum_probs=357.7
Q ss_pred CceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHH
Q 009321 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAN 96 (537)
Q Consensus 17 ~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~ 96 (537)
.+|+|||||||+|++|.|..+++|+||+|||||||++||||+|++|++|+++||||++||+|.||+|+||+|+||+.+|+
T Consensus 3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~ 82 (462)
T 3tqo_A 3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG 82 (462)
T ss_dssp CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH
T ss_pred ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ccceeecCCCCCCCCCCcchh
Q 009321 97 DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQR 175 (537)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~-~~~v~f~~~~~~~yg~ls~~~ 175 (537)
++|++|++++++|++.|.++|++|||.+++.+||+|+|++.++++|++|+++|+||++ +++||||+++++.||+||+++
T Consensus 83 ~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~ 162 (462)
T 3tqo_A 83 ENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRH 162 (462)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCC
Confidence 9999999999999999999999999998899999999999999999999999999998 799999999999999999999
Q ss_pred chhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHH
Q 009321 176 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (537)
Q Consensus 176 l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~ 255 (537)
++++..|++++.+.+|++|.||+|||.+++|+|+|+||||.||||||||||+|+.++||.++|||+||.||+||||+|++
T Consensus 163 ~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHhenei 242 (462)
T 3tqo_A 163 LDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEI 242 (462)
T ss_dssp CC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHH
T ss_pred hHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHH
Q 009321 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYI 335 (537)
Q Consensus 256 a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l 335 (537)
||++|+.+.||+++|+|+|+|+++|+|||||+||+|+|+|++++|++|++|||++++||+++++||++.+.++.+.+.+|
T Consensus 243 aqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl 322 (462)
T 3tqo_A 243 AQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERF 322 (462)
T ss_dssp HHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhH
Q 009321 336 YQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 415 (537)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~ 415 (537)
++++.++.. . . . ..+..+.+.|.+||+||||+|.|++. |+++++.+|++.+...
T Consensus 323 ~~~~~~~~~----~---~-~--------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~--------- 376 (462)
T 3tqo_A 323 YLALRGLPV----V---N-H--------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ--------- 376 (462)
T ss_dssp HHHHTTCCC----------------------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhhh----c---c-c--------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc---------
Confidence 888754311 0 0 0 01345678899999999999999999 9999999999875432
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCChhHhHHHHHHhHhCC
Q 009321 416 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495 (537)
Q Consensus 416 ~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~aD~IRd~L~~~G 495 (537)
...+..+...+..++.+|||... ..+...+ .. ...+.+++|+.||++|++||++|||++||+|||+|.++|
T Consensus 377 --~~~~~~~~~~~~~~~~vlg~~~~-~~~~~~~---~~---~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~G 447 (462)
T 3tqo_A 377 --IEKAAVLAAELKCLGNIFGLLQY-SPEQFLQ---GA---KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLG 447 (462)
T ss_dssp --HHHHHHHHHHHHHHHGGGTCSCS-CHHHHC------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHhcCCCcc-chhhhhh---cc---ccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCC
Confidence 11233455778889999999764 2222111 00 012345789999999999999999999999999999999
Q ss_pred CEEEecCCceEEEe
Q 009321 496 IALMDMGKETIWRP 509 (537)
Q Consensus 496 I~l~D~~~Gt~W~~ 509 (537)
|.|+|+|+||+|++
T Consensus 448 i~l~D~~~g~~w~~ 461 (462)
T 3tqo_A 448 VAIEDSSDGTSWRQ 461 (462)
T ss_dssp --------------
T ss_pred cEEEEcCCCcEEEe
Confidence 99999999999986
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.9e-114 Score=915.91 Aligned_cols=461 Identities=29% Similarity=0.476 Sum_probs=357.5
Q ss_pred CCceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchh--------
Q 009321 16 DLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV-------- 87 (537)
Q Consensus 16 ~~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~-------- 87 (537)
..+|+|||||||+|++|.|.. +|+||+|||||||++||||+|++|++|+++||||++||+|.||+|+||+
T Consensus 21 ~m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~D 98 (501)
T 3sp1_A 21 SMILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLD 98 (501)
T ss_dssp -CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----
T ss_pred CCeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCC
Confidence 346999999999999999987 9999999999999999999999999999999999999999999999998
Q ss_pred --hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC
Q 009321 88 --DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165 (537)
Q Consensus 88 --d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~ 165 (537)
|+||+.+|+++|++|++++++|++.|.++|++|||.+++.+|++++|++.++++|++|+++|+||+++++||||++++
T Consensus 99 ehddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f 178 (501)
T 3sp1_A 99 DGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF 178 (501)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC
T ss_pred CCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc
Confidence 999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCCcchhc-hhhhcCCCccccccccCccccccccc--c-cCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEE
Q 009321 166 PNYGRLSGQRL-ENNRAGERVAVDSRKRNPADFALWKA--A-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241 (537)
Q Consensus 166 ~~yg~ls~~~l-~~~~~g~~~~~~~~k~~~~df~lwk~--~-~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~ 241 (537)
+.||+||+.++ +++..|++++.+..|++|.||+|||. . .+++|+|++|||.||||||||||+|+.++||.++|||+
T Consensus 179 ~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~ 258 (501)
T 3sp1_A 179 KSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHL 258 (501)
T ss_dssp TTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEE
T ss_pred CCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEe
Confidence 99999999999 88888998888788999999999998 3 46889999999999999999999999999999999999
Q ss_pred ecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHH-cCchhhHHHHhhcCcCCCccc
Q 009321 242 GGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNY 320 (537)
Q Consensus 242 ~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~f 320 (537)
||+||+||||+||+||++|+++++|+++|+|+|||+++|+|||||+||+|+|+|++++ |++|++||||++.||+++++|
T Consensus 259 gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~f 338 (501)
T 3sp1_A 259 GGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKF 338 (501)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEEC
T ss_pred eccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHH
Q 009321 321 SVLQLDSASDA----VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK 396 (537)
Q Consensus 321 s~~~l~~~~~~----l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~ 396 (537)
|++.|.++.+. +.+|++++.++........... ....+ ...+..+.+.|.+||+||||+|.|++. |+++++
T Consensus 339 s~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~~~ 413 (501)
T 3sp1_A 339 SLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKD-LKNFG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEIIK 413 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSC-TTSCS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccccccc-ccchh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHHHH
Confidence 99999999999 7777777665432211100000 00011 123456788999999999999999999 999999
Q ss_pred HHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 009321 397 FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 476 (537)
Q Consensus 397 ~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR 476 (537)
.+| + . .. .+...+..++.+|||... ...++. . .......+++|+.||++|++||
T Consensus 414 ~~~--~---~----~~----------~~~~~~~~~~~vlGl~~~---~~~~~~---~-~~~~~~~~~~i~~li~~R~~ar 467 (501)
T 3sp1_A 414 SDN--L---S----FV----------SKLRLAFIFDEIMSLNLR---EEILKN---L-QNHDVVIDENMKALIEERRIAK 467 (501)
T ss_dssp CSS--S---C----HH----------HHHHHHHHHHHHHCCCHH---HHHHHH---H-TTSCCCCCHHHHHHHHHHHHHH
T ss_pred Hhc--c---C----HH----------HHHHHHHHHHHHcCCCcc---cchhhc---c-cccchhhHHHHHHHHHHHHHHH
Confidence 875 1 0 00 112567777899999642 111110 0 0012245689999999999999
Q ss_pred cCCChhHhHHHHHHhHhCCCEEEecCCceEEEe
Q 009321 477 KNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 477 ~~Kdf~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
++|||++||+|||+|.++||.|+|+|+||+|++
T Consensus 468 ~~kd~~~aD~iRd~L~~~Gi~l~D~~~g~~w~~ 500 (501)
T 3sp1_A 468 CEKNFKRADEIRDFFAKKGFVLVDTKEGTKVKR 500 (501)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCCC----------
T ss_pred HccCHHHHHHHHHHHHHCCcEEEEcCCCcEEEe
Confidence 999999999999999999999999999999986
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=4.6e-107 Score=865.72 Aligned_cols=458 Identities=45% Similarity=0.764 Sum_probs=352.6
Q ss_pred eeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHc
Q 009321 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (537)
Q Consensus 19 l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~ 98 (537)
|+|||||||+|++|.|.++++|+||+|||||||++||||+|++|++|+++|+||+.||+|.||+|+||+|+||+.+|+++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ccceeecCCCCCCCCCCcchhch
Q 009321 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLE 177 (537)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~-~~~v~f~~~~~~~yg~ls~~~l~ 177 (537)
|++|++++++|.+.|.++|++|||.+++.++|+|+|++.+++++++|+++|++|+. +|+||||+++++.||+++++.++
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~ 161 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHH
Confidence 99999999999999999999999998899999999999999999999999999999 99999999999999999999888
Q ss_pred hhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHH
Q 009321 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~ 257 (537)
++.+|++++.+..|++|.||++||..++|+|+|++|||.|+||||+||++|+.++||.++|||+||+||+||||+|++||
T Consensus 162 ~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq 241 (461)
T 1li5_A 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (461)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred HhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHH
Confidence 88889888887789999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHH
Q 009321 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (537)
Q Consensus 258 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~ 337 (537)
++|+.+.+++++|+|+|||+++|+|||||+||+|+|+|+++.|++|++|||+|++||+++++||++.+.++.+.+.++++
T Consensus 242 ~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n 321 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYT 321 (461)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99987778999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHH
Q 009321 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (537)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~ 417 (537)
++.++ .. .. .+ + .+..+.+.|.++|+||||++.|++. |++|++.+|+|++. . .
T Consensus 322 ~~~~~----~~----~~-~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~~~~N~~~~~-~----~------ 374 (461)
T 1li5_A 322 ALRGT----DK----TV-AP-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAE-D----M------ 374 (461)
T ss_dssp HHTTC----CT----TS-CC-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHH-C----H------
T ss_pred HHHHh----hc----CC-CH-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHhc-c----H------
Confidence 76543 11 00 11 2 3567788999999999999999999 99999999999965 2 0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCChhHhHHHHHHhHhCCCE
Q 009321 418 IESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497 (537)
Q Consensus 418 ~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~aD~IRd~L~~~GI~ 497 (537)
..+..+...|..++.+|||... .+.... + .. .....+..++|+.||++|++||++|||++||+|||+|.++||.
T Consensus 375 -~~~~~~~~~~~~~~~~lG~~~~-~~~~~~-~--~~-~~~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~ 448 (461)
T 1li5_A 375 -AAANAMASHLRKLSAVLGLLEQ-EPEAFL-Q--SG-AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIV 448 (461)
T ss_dssp -HHHHHHHHHHHHHHTTTTCSCS-CHHHHC--------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHcCCCcc-Chhhhh-h--cc-cccccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCE
Confidence 1344556788899999999542 222111 0 00 0000001146889999999999999999999999999999999
Q ss_pred EEecCCceEEEe
Q 009321 498 LMDMGKETIWRP 509 (537)
Q Consensus 498 l~D~~~Gt~W~~ 509 (537)
|+|+|+||+|++
T Consensus 449 ~~d~~~g~~w~~ 460 (461)
T 1li5_A 449 LEDGPQGTTWRR 460 (461)
T ss_dssp ------------
T ss_pred EEEcCCCcEEEe
Confidence 999999999985
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.6e-84 Score=683.81 Aligned_cols=387 Identities=33% Similarity=0.513 Sum_probs=333.5
Q ss_pred CCCceeeeecCCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHH
Q 009321 15 MDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR 94 (537)
Q Consensus 15 ~~~~l~~~ntl~~~~~~~~p~~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~ 94 (537)
..++|+||||+|+++++|.| +++|++|+|||||||++||||+|++|++|+++|+||++||+|.|++|+||+|+||+.+
T Consensus 17 ~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~ 94 (414)
T 3c8z_A 17 RGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFER 94 (414)
T ss_dssp CCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHH
T ss_pred CCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHH
Confidence 35689999999999999999 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeec----cceeecCCCCCCCCC
Q 009321 95 ANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEKSPNYGR 170 (537)
Q Consensus 95 a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~----~~v~f~~~~~~~yg~ 170 (537)
|+++|++|++++++|.+.|.++|++|||.++|.++|+|+|++.++++|++|+++|++|+++ +++||++++++.||+
T Consensus 95 A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~ 174 (414)
T 3c8z_A 95 AERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGY 174 (414)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHh
Confidence 9999999999999999999999999999877999999999999999999999999999988 999999999999999
Q ss_pred CcchhchhhhcC--CC-ccc-cccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccC
Q 009321 171 LSGQRLENNRAG--ER-VAV-DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246 (537)
Q Consensus 171 ls~~~l~~~~~g--~~-~~~-~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl 246 (537)
+++...+++..+ ++ ++. ...|++|.||++||...+|++.|++|||.|+||||+||++|+.++||.++|||++|+||
T Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~ 254 (414)
T 3c8z_A 175 ESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDL 254 (414)
T ss_dssp TTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGG
T ss_pred hcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEecccc
Confidence 988766665432 11 233 34588999999999988999999999999999999999999999999999999999999
Q ss_pred cCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHH-cCchhhHHHHhhcCcCCCcccCHHH
Q 009321 247 IFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQ 324 (537)
Q Consensus 247 ~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~~~ 324 (537)
+||||+|+++|+.|+.+. +|+++|+|+|||+++|+|||||+||+|++.|++++ |++|++|||+++.+|+++++||++.
T Consensus 255 ~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~~ 334 (414)
T 3c8z_A 255 IFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEV 334 (414)
T ss_dssp TTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHH
T ss_pred ccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHHH
Confidence 999999999999998665 88999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhh
Q 009321 325 LDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNM 404 (537)
Q Consensus 325 l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~ 404 (537)
+.++.+.+.+|+++++++ . . + .+.++.+.|.++|+|+|+++.|++. |++|++.+|+ ..
T Consensus 335 l~~~~~~l~~l~n~~~~~----~----~----~-------~~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~--~~ 392 (414)
T 3c8z_A 335 LDEANARLARWRSATALP----E----A----P-------DATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS--YG 392 (414)
T ss_dssp HHHHHHHHHHHHHHHTSS----C----B----S-------CCHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHHHHHHhc----c----c----h-------hHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh--cc
Confidence 999999998888876543 1 0 1 1245678899999889999999999 9999999998 22
Q ss_pred hcccCchhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 009321 405 LKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438 (537)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~ 438 (537)
. . . .. +...+++.+..||||.
T Consensus 393 ~-~-~-~~----------~~~~~~~~~d~vLg~~ 413 (414)
T 3c8z_A 393 G-H-D-TE----------SPRLVATTVDALLGVD 413 (414)
T ss_dssp C-S-B-SS----------HHHHHHHHHHHHHCCC
T ss_pred C-C-C-hh----------hHHHHHHHHHHHhCCC
Confidence 1 1 1 11 1124566777899874
No 5
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=3.2e-63 Score=536.73 Aligned_cols=400 Identities=19% Similarity=0.222 Sum_probs=303.2
Q ss_pred cceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 39 KVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 39 ~v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
+.++|+|+|+|| |++||||+|+++++|+++|++|++|++|.++.|+|+||+||+.+|+++|.++++++++|.+.|.++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 357999999988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCCCCCcchhchhhh
Q 009321 117 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRLENNR 180 (537)
Q Consensus 117 l~~L~i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~yg~ls~~~l~~~~ 180 (537)
|++|||. +|.++++++ |++.+++++++|+++|++|++...++||+.+ |+.||. .++...
T Consensus 84 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~ 158 (497)
T 2csx_A 84 WEFLKIE-YTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQK----KCEYIK 158 (497)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------------------------C
T ss_pred HHHhCCc-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCC----CCeEEe
Confidence 9999997 688889887 9999999999999999999998888888763 233332 121111
Q ss_pred cCCC-ccccc--------cccCccccc----------ccccccCCC-----CccccCCCCCCC---chhhh---------
Q 009321 181 AGER-VAVDS--------RKRNPADFA----------LWKAAKAGE-----PSWDSPWGPGRP---GWHIE--------- 224 (537)
Q Consensus 181 ~g~~-~~~~~--------~k~~~~df~----------lwk~~~~g~-----~~w~~~wG~g~P---gW~ie--------- 224 (537)
.+.- +.++. .+.+| ++. -|......+ |.|+++||.++| +||++
T Consensus 159 ~~~wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~ 237 (497)
T 2csx_A 159 EPSYFFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNY 237 (497)
T ss_dssp CEEEEECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHH
T ss_pred cCceEEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhh
Confidence 1100 00000 00111 111 111111112 345789999999 78887
Q ss_pred HHHHHH---hhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcC
Q 009321 225 CSAMSA---HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYH 301 (537)
Q Consensus 225 cs~~~~---~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~ 301 (537)
||+|.. ++| ++|+|++|+|++||||++|++++++++.. +++.|+|||||+++|+|||||+||+|+|.|++++||
T Consensus 238 ~s~~~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~-~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g 314 (497)
T 2csx_A 238 ISALEDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYE-LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYG 314 (497)
T ss_dssp HHTTTTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCC-CCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHC
T ss_pred cccCCCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCC-CCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCC
Confidence 888865 677 78999999999999999999999888544 455568899999999999999999999999999999
Q ss_pred chhhHHHHhh-cCcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 009321 302 PLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378 (537)
Q Consensus 302 ~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~ 378 (537)
+|++|||+++ .+++++++||++.+.++.+. ..+++|+++|+.+.+.+........+.+++++..+.++.+.+.++|
T Consensus 315 ~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~- 393 (497)
T 2csx_A 315 LDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM- 393 (497)
T ss_dssp HHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH-
Confidence 9999999998 69999999999999987654 2344555555555443221111123467899999999999999999
Q ss_pred cccCchhhhHHHHHHHHHHHHHHHhhhcccCchh-hhHHH-HHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSL-IESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 379 dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~-~~~~~-~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
++|+++.|++. |++|++.+|+|++..++|...+ ....+ ...+..+...|+.++.+|. |+|. .++++|+++
T Consensus 394 ~~~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~-~aeei~~~L 466 (497)
T 2csx_A 394 EKVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPN-KMKEALQML 466 (497)
T ss_dssp TTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHT
T ss_pred HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCH-HHHHHHHHc
Confidence 99999999999 9999999999999998874322 11112 2334556667777777774 7776 677777665
No 6
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.4e-61 Score=524.67 Aligned_cols=400 Identities=19% Similarity=0.202 Sum_probs=302.7
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+|++|++|+.+|+++|.++++++++|.+.|.++|+
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6999999986 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeccceeecCCCC--CCCCCC-------cchhchhhhcCCC-cc
Q 009321 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--PNYGRL-------SGQRLENNRAGER-VA 186 (537)
Q Consensus 119 ~L~i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~--~~yg~l-------s~~~l~~~~~g~~-~~ 186 (537)
+|||. +|.++++++ |++.+++++++|.++|++|++...++||+.+. ..++.+ ++..++....++- +.
T Consensus 84 ~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~ 162 (500)
T 2d5b_A 84 LLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFR 162 (500)
T ss_dssp HTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEEC
T ss_pred HhCCc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEE
Confidence 99997 688889986 99999999999999999999988888887641 111221 1111111100000 00
Q ss_pred cc--------ccccCcccccccccc--------cCC--C--Ccc---ccCCCCCCC---------------------chh
Q 009321 187 VD--------SRKRNPADFALWKAA--------KAG--E--PSW---DSPWGPGRP---------------------GWH 222 (537)
Q Consensus 187 ~~--------~~k~~~~df~lwk~~--------~~g--~--~~w---~~~wG~g~P---------------------gW~ 222 (537)
++ ..+.++ +|..|... ++| + ++| +.+||.++| |||
T Consensus 163 l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~ 241 (500)
T 2d5b_A 163 MEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYP 241 (500)
T ss_dssp GGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTT
T ss_pred cHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCC
Confidence 00 011222 44433221 122 2 344 778999999 788
Q ss_pred hhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcC
Q 009321 223 IECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYH 301 (537)
Q Consensus 223 iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~ 301 (537)
++|+ ...+| +.|||++|+|++||||++|++++++++. ++++.|+|||||++ +|+|||||+||+|+|.|++++||
T Consensus 242 ~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~-~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g 316 (500)
T 2d5b_A 242 EGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGI-PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYG 316 (500)
T ss_dssp TCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTC-CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHC
T ss_pred CCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCC-CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcC
Confidence 8886 44566 4699999999999999999999998854 45566688999999 99999999999999999999999
Q ss_pred chhhHHHHhh-cCcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 009321 302 PLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378 (537)
Q Consensus 302 ~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~ 378 (537)
+|++|||+++ .+++++++||++.+.++.+. ...+.+.+.++.+.+.+..........+++++..+.++.+.+.++|
T Consensus 317 ~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~a~- 395 (500)
T 2d5b_A 317 RDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLV- 395 (500)
T ss_dssp HHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHHHHHH-
T ss_pred cHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999 59999999999999887653 1122233333333221111111111224788888899999999999
Q ss_pred cccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHH-HHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 379 dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
++|+++.|++. |++|++.+|+|++..++|...+....+. ..+..+...|+.++.+|. |+|. .++++|+++
T Consensus 396 ~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~-~aeei~~~l 467 (500)
T 2d5b_A 396 RELKFHVALEE-AMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPD-KMAELRRAL 467 (500)
T ss_dssp HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHT
T ss_pred HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccH-HHHHHHHHc
Confidence 99999999999 9999999999999999885432221222 234455566666677774 7776 566777655
No 7
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=5.8e-60 Score=516.79 Aligned_cols=404 Identities=17% Similarity=0.173 Sum_probs=310.5
Q ss_pred cceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 39 KVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 39 ~v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
.-.+|+|+|.|| |.+||||+++++++|+++||+|++||+|.||+|+|+||.||+.+|+++|++|++++++|++.|.++
T Consensus 8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~ 87 (542)
T 3u1f_A 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKC 87 (542)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 346788887777 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCCCCcchhchhhhcC
Q 009321 117 MADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLSGQRLENNRAG 182 (537)
Q Consensus 117 l~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg~ls~~~l~~~~~g 182 (537)
+++|||+ .|.+.||+ +|.+.++++|.+|.++|++|++.+.||||+++ |+.||...+. ...+|
T Consensus 88 ~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~---~~~sg 163 (542)
T 3u1f_A 88 FEQMDYS-IDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKV---SLESG 163 (542)
T ss_dssp HHHHTCC-CSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEE---ETTTC
T ss_pred HHHhCCc-cCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccc---cCCCC
Confidence 9999998 58888887 79999999999999999999999999999875 3445432211 11223
Q ss_pred CCcccccc------------------ccCcccccccccc------------cCCCCc----cccCCCCCCCc--------
Q 009321 183 ERVAVDSR------------------KRNPADFALWKAA------------KAGEPS----WDSPWGPGRPG-------- 220 (537)
Q Consensus 183 ~~~~~~~~------------------k~~~~df~lwk~~------------~~g~~~----w~~~wG~g~Pg-------- 220 (537)
..++.... +.++ ++..|... .+..++ |...||+++|+
T Consensus 164 ~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~v 242 (542)
T 3u1f_A 164 HVVTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYV 242 (542)
T ss_dssp CBEEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECH
T ss_pred CcceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeee
Confidence 33221100 1111 22222111 111233 33459999997
Q ss_pred hhhhHHH-HH-Hh------------------hcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCC
Q 009321 221 WHIECSA-MS-AH------------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN 280 (537)
Q Consensus 221 W~iecs~-~~-~~------------------~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G 280 (537)
|+.+... ++ .. ....+.|+|++|+|++|||+++++|++.+.+. ++++.++|||||+.+|
T Consensus 243 w~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~-~~~~~v~~hg~l~~~G 321 (542)
T 3u1f_A 243 WLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGL-PLPKKIVAHGWWTKDR 321 (542)
T ss_dssp HHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTC-CCCSCEEEECCCEETT
T ss_pred eeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcc-cccceeccccceecCC
Confidence 7654321 11 11 12347899999999999999999999998754 4556678899999999
Q ss_pred ccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC----C
Q 009321 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH----G 353 (537)
Q Consensus 281 ~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~----~ 353 (537)
+|||||+||+|+|.|++++||+|+||||+++. ++++|++||++.+.+..|. ..+|+|.+.|+.......... .
T Consensus 322 ~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~ 401 (542)
T 3u1f_A 322 KKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPA 401 (542)
T ss_dssp BCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCC
T ss_pred ceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 99999999999999999999999999999985 8999999999999887664 334556666655443322111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHH-HHHHHHHHHHHHHH
Q 009321 354 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVL 432 (537)
Q Consensus 354 ~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~l 432 (537)
...+.|+++++.+.++.+.+.++| ++|+++.|+.. |++|++.+|+|++..+||...+.+..+. ..+..++.+|+.++
T Consensus 402 ~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~ 479 (542)
T 3u1f_A 402 AYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTT 479 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 123347899999999999999999 99999999999 9999999999999999986543333333 33455566677777
Q ss_pred hhcc-cCCCCChHHHHHHHH
Q 009321 433 RILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 433 ~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+|. |+|. .++++|++|+
T Consensus 480 ~ll~P~~P~-~aeei~~~Lg 498 (542)
T 3u1f_A 480 LLLSPILPR-KSVVIFDMLG 498 (542)
T ss_dssp HHHTTTSHH-HHHHHHHHHT
T ss_pred HHHHhHhHH-HHHHHHHHCC
Confidence 6774 8887 7788887764
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.6e-59 Score=525.39 Aligned_cols=406 Identities=16% Similarity=0.141 Sum_probs=310.8
Q ss_pred EEEeCCCCCCCCCcchhhH-HHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 42 MYVCGVTAYDLSHLGHARA-AVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~-~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
|.++.|+|||.+||||+++ ++.+|+++||+|++||+|.|++|+|+||++|+.+|+++|++|++++++|.+.|.+++++|
T Consensus 6 itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~l 85 (722)
T 1rqg_A 6 VTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRA 85 (722)
T ss_dssp EEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3334567779999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCCC--------------Cc
Q 009321 121 QCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGR--------------LS 172 (537)
Q Consensus 121 ~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg~--------------ls 172 (537)
||+ +|.++||+ +|.+.++++|.+|+++|++|++.+.+|||+.+ ||.||. ++
T Consensus 86 gis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~ 164 (722)
T 1rqg_A 86 KIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLT 164 (722)
T ss_dssp TCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCC
T ss_pred CCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccC
Confidence 997 68889988 59999999999999999999999999999986 565553 11
Q ss_pred chhchh---hhcCCCccccc----------cccCccccc---ccccc---------cCCCCcc----ccCCCCCCC----
Q 009321 173 GQRLEN---NRAGERVAVDS----------RKRNPADFA---LWKAA---------KAGEPSW----DSPWGPGRP---- 219 (537)
Q Consensus 173 ~~~l~~---~~~g~~~~~~~----------~k~~~~df~---lwk~~---------~~g~~~w----~~~wG~g~P---- 219 (537)
+.++.. .++|.+++... ++....++. .|... +.|...| +.+||.++|
T Consensus 165 ~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~ 244 (722)
T 1rqg_A 165 PEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE 244 (722)
T ss_dssp TTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS
T ss_pred hhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCcccc
Confidence 111111 11344432211 110111111 24332 2454444 789999999
Q ss_pred chh-----------hhHHHHHH-------------hhcC--C--CeeEEEecccCcCcchhHHHHHHhhcc---------
Q 009321 220 GWH-----------IECSAMSA-------------HYLS--S--KFDIHGGGIDLIFPHHENEIAQSCAAC--------- 262 (537)
Q Consensus 220 gW~-----------iecs~~~~-------------~~~g--~--~~dih~~G~Dl~fpH~~~~~a~~~a~~--------- 262 (537)
||+ ++|.+++. .+|+ . ..++|++|+|++|||..+|||++++++
T Consensus 245 g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~r 324 (722)
T 1rqg_A 245 DMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEA 324 (722)
T ss_dssp SSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCB
T ss_pred CCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCccccccc
Confidence 554 44544331 3565 3 256999999999999999999999876
Q ss_pred CCCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHH--HHHHHHHH
Q 009321 263 QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTL 339 (537)
Q Consensus 263 ~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~ 339 (537)
+.++++.++|||||+++|+|||||+||+|+|.|++++||+|++|||+++. ++++|++||++.+.+..|. +.++.+.+
T Consensus 325 g~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~ 404 (722)
T 1rqg_A 325 EWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFV 404 (722)
T ss_dssp CBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHH
T ss_pred CCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 33444677999999999999999999999999999999999999999997 9999999999999987663 23333444
Q ss_pred HHHHHhcCccccC-----CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhh
Q 009321 340 QDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 414 (537)
Q Consensus 340 ~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~ 414 (537)
+|+..++.+...+ ......+++++..+.++...+.++| ++|+++.|+.. +++|++.+|+|++..+||...+.+
T Consensus 405 ~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~~k~~ 482 (722)
T 1rqg_A 405 HRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQPWKTAKED 482 (722)
T ss_dssp HHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHHTTTC
T ss_pred HHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCC
Confidence 4443333221110 1112346789999999999999999 99999999999 999999999999999998643222
Q ss_pred HHHH-HHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 415 LSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 415 ~~~~-~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
..+. ..+..+...|+.++.+|. |+|. .++++|++++
T Consensus 483 ~~~~~~vl~~l~~~l~~l~~lL~P~~P~-~aeei~~~L~ 520 (722)
T 1rqg_A 483 KVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLLN 520 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHcC
Confidence 2222 334456677777777774 8887 7889998875
No 9
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=4.2e-59 Score=508.43 Aligned_cols=412 Identities=20% Similarity=0.203 Sum_probs=297.7
Q ss_pred cccccCCCCcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHH
Q 009321 30 ELFTPIVRGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSN 107 (537)
Q Consensus 30 ~~~~p~~~~~v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~ 107 (537)
.++.|..-++.++|+|||+|| |++||||+|++|++|+++|++|+.||+|.|++|+||+|+||+.+|.+.|.+|+++++
T Consensus 15 ~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~ 94 (536)
T 4dlp_A 15 QTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLAD 94 (536)
T ss_dssp ---------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHH
T ss_pred cccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHH
Confidence 455554434568999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchh-------
Q 009321 108 RYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN------- 178 (537)
Q Consensus 108 ~~~~~~~~~l~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~------- 178 (537)
+|.+.|.++|++|||. +|.++|++ +|++.+++++++|.++|++|++++.+|||+++...+.. ..+.+
T Consensus 95 ~~~~~~~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~---~~~~~~~~g~~c 170 (536)
T 4dlp_A 95 RNTSAFRRMAEVLNSS-NDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGE---EETEVRADGVRY 170 (536)
T ss_dssp HHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECG---GGCEECTTSCEE
T ss_pred HHHHHHHHHHHHcCCC-CCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCH---HHhhcCCCCCcc
Confidence 9999999999999999 57888888 49999999999999999999999999999875322111 11100
Q ss_pred hhcCCCccc----------ccc--------ccCccccc----------ccccc--cCCCCccc-cCCCCCCCc-------
Q 009321 179 NRAGERVAV----------DSR--------KRNPADFA----------LWKAA--KAGEPSWD-SPWGPGRPG------- 220 (537)
Q Consensus 179 ~~~g~~~~~----------~~~--------k~~~~df~----------lwk~~--~~g~~~w~-~~wG~g~Pg------- 220 (537)
..+|..++. ... +.+| +|. -|... ++-.+++. ..||+++|+
T Consensus 171 ~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~y 249 (536)
T 4dlp_A 171 GPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMY 249 (536)
T ss_dssp CTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEEC
T ss_pred cCCCCcceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceE
Confidence 011222211 000 1111 111 11110 11124453 479999995
Q ss_pred -hhhhHHHHHHh--h--------cCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCC
Q 009321 221 -WHIECSAMSAH--Y--------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN 289 (537)
Q Consensus 221 -W~iecs~~~~~--~--------~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn 289 (537)
|+......... + -.++.|+|+.|+|+++||+.+|++++.+++..+|.++ ++||||+++|+|||||+||
T Consensus 250 vWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v-~~hg~v~~~G~KMSKS~GN 328 (536)
T 4dlp_A 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRV-FAHGFLFNRGEKMSKSVGN 328 (536)
T ss_dssp HHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCE-EEECCEEC-----------
T ss_pred EeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEE-EeeeeEeeCCceecccCCC
Confidence 77654433210 0 0136789999999999999999999999877677777 4569999999999999999
Q ss_pred cccHHHHHHHcCchhhHHHHhh-cCcCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCCCCCChH
Q 009321 290 FFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPA 361 (537)
Q Consensus 290 ~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~ 361 (537)
+|+|.|++++||+|++|||+++ .++.++++||++.+.+..|. +.+++|+++|+.+++.+...+ ......|++
T Consensus 329 vi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ 408 (536)
T 4dlp_A 329 VIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKA 408 (536)
T ss_dssp -CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHH
Confidence 9999999999999999999999 59999999999999887652 345556555555444322111 112335789
Q ss_pred HHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhH-HHHHHHHHHHHHHHHHHhhcc-cCC
Q 009321 362 AEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL-SLIESLRKIENEVKEVLRILG-LLP 439 (537)
Q Consensus 362 l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~l~vLG-i~~ 439 (537)
++..+.++.+.+.++| ++++++.|+.. +++|++.+|+|++..++|...+.+. .+...+..+..+|+.++.+|. |+|
T Consensus 409 ll~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P 486 (536)
T 4dlp_A 409 ILDQADAALETARKAM-DDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIP 486 (536)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999 89999999999 9999999999999999875433222 233455667777888888886 777
Q ss_pred CCChHHHHHHH
Q 009321 440 PGAYSEVLQQL 450 (537)
Q Consensus 440 ~~~~~~~~~~~ 450 (537)
. .++++|+++
T Consensus 487 ~-~aeei~~~L 496 (536)
T 4dlp_A 487 Q-SAEKLLDIL 496 (536)
T ss_dssp H-HHHHHHHTT
T ss_pred H-HHHHHHHHc
Confidence 6 677777665
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=2.6e-59 Score=509.39 Aligned_cols=406 Identities=19% Similarity=0.184 Sum_probs=300.8
Q ss_pred CCcceEEEeC--CCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009321 37 RGKVGMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (537)
Q Consensus 37 ~~~v~~y~~g--Pt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~ 114 (537)
+|+..+|+++ |+|+|++||||+|+++++|+++|++|++||+|.|+.|+|++|+||+.+|+++|.++++++++|.+.|.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4555555555 55669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeccceeecCCC--CCCCCCCcchh---chhhhcCCCccc
Q 009321 115 VDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNYGRLSGQR---LENNRAGERVAV 187 (537)
Q Consensus 115 ~~l~~L~i~~~~~~~r~s~--~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--~~~yg~ls~~~---l~~~~~g~~~~~ 187 (537)
+++++|||. +|.++|+++ |++.++++|++|.++|++|++++.+|||+.+ +..++.+.... .....+|..++.
T Consensus 89 ~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~ 167 (524)
T 2x1l_A 89 RLQEKLNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTW 167 (524)
T ss_dssp HHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEE
T ss_pred HHHHHcCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceE
Confidence 999999997 688999987 9999999999999999999999999999876 22222210000 000011222110
Q ss_pred ------------------------------cccccCcccccccccccCCCCccc-cCCCCCCCc--------hhhh----
Q 009321 188 ------------------------------DSRKRNPADFALWKAAKAGEPSWD-SPWGPGRPG--------WHIE---- 224 (537)
Q Consensus 188 ------------------------------~~~k~~~~df~lwk~~~~g~~~w~-~~wG~g~Pg--------W~ie---- 224 (537)
+..++...+|.. ...++..++|. .+||.++|+ |+..
T Consensus 168 ~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~-~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~ 246 (524)
T 2x1l_A 168 TEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVS-GGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNY 246 (524)
T ss_dssp EEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHT-TCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHH
T ss_pred EecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHH-cCCcccceECCCCCcCccCCCCCCCEEEEecCCchHH
Confidence 000111111110 01112223444 369988883 5432
Q ss_pred ---------HHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCcccHHH
Q 009321 225 ---------CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 295 (537)
Q Consensus 225 ---------cs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d 295 (537)
|+.+...+| +.|||++|+|++||||++|+|++++++..+|.++|+| |||+++|+|||||+||+|+|.|
T Consensus 247 ~~~~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v~p~d 323 (524)
T 2x1l_A 247 LTGVGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVVDPVN 323 (524)
T ss_dssp HHTTTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESSCHHH
T ss_pred HHHcCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCCCHHH
Confidence 333444555 5899999999999999999999998876666788665 9999999999999999999999
Q ss_pred HHHHcCchhhHHHHhh-cCcCCCcccCHHHHHHHHHH-----HHHHHHHHHHHH-HhcCcccc-CCCCCCCChHHHHHHH
Q 009321 296 ITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDCE-VALSPFQE-HGKTARINPAAEDCIN 367 (537)
Q Consensus 296 ll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~-----l~~l~~~~~~~~-~~l~~~~~-~~~~~~~~~~l~~~l~ 367 (537)
++++||+|++|||+++ .+++++++||++.+.++.+. ++++.+++..+. ........ .....+.+++++..+.
T Consensus 324 ~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 403 (524)
T 2x1l_A 324 LVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAAD 403 (524)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHH
Confidence 9999999999999999 69999999999999988764 444433322211 11111100 0111234678899999
Q ss_pred HHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhh----hHH-HHHHHHHHHHHHHHHHhhcc-cCCCC
Q 009321 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ----QLS-LIESLRKIENEVKEVLRILG-LLPPG 441 (537)
Q Consensus 368 ~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~----~~~-~~~~l~~~~~~l~~~l~vLG-i~~~~ 441 (537)
++.+.+.++| ++|+++.|++. |++|++.+|+|++.+++|...+. +.. ....+..+..+|+.++.+|. |+|.
T Consensus 404 ~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~- 480 (524)
T 2x1l_A 404 ALLERVREHF-DVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPE- 480 (524)
T ss_dssp THHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH-
T ss_pred HHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-
Confidence 9999999999 99999999999 99999999999999998743211 111 22334456677777777774 7777
Q ss_pred ChHHHHHHH
Q 009321 442 AYSEVLQQL 450 (537)
Q Consensus 442 ~~~~~~~~~ 450 (537)
.++++|+++
T Consensus 481 ~aeei~~~L 489 (524)
T 2x1l_A 481 STAKLLDLL 489 (524)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 677777765
No 11
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=6.7e-58 Score=501.41 Aligned_cols=411 Identities=16% Similarity=0.144 Sum_probs=311.9
Q ss_pred ccCCCCcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHH
Q 009321 33 TPIVRGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110 (537)
Q Consensus 33 ~p~~~~~v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~ 110 (537)
.|..++++++|+|+|+|| |++||||+|+++++|+++|++|++||+|.|++|+||+|++|+.+|.+.|+++++++++|.
T Consensus 11 ~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 90 (560)
T 3h99_A 11 GSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMS 90 (560)
T ss_dssp ------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHH
Confidence 355789999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC------------CCCCCCC-----
Q 009321 111 QEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL----- 171 (537)
Q Consensus 111 ~~~~~~l~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------------~~~yg~l----- 171 (537)
+.|.++|++|||. +|.+.+++ +|.+.+++++++|.++|++|++++.+|||+.+ ||.||..
T Consensus 91 ~~~~~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd 169 (560)
T 3h99_A 91 QEHQTDFAGFNIS-YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHHTTCC-CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETT
T ss_pred HHHHHHHHHcCCC-CCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccc
Confidence 9999999999998 57777776 78899999999999999999999999999874 6766632
Q ss_pred ---------cchhchhh---hcCCCcccccccc---Cccccc---------------------cccc--ccCCCCcccc-
Q 009321 172 ---------SGQRLENN---RAGERVAVDSRKR---NPADFA---------------------LWKA--AKAGEPSWDS- 212 (537)
Q Consensus 172 ---------s~~~l~~~---~~g~~~~~~~~k~---~~~df~---------------------lwk~--~~~g~~~w~~- 212 (537)
.+.++.+. .+|.++....... .-.+|. -|.. .++-.++++.
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~ 249 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAP 249 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESS
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCC
Confidence 22222111 1233332110000 000110 1111 1111245666
Q ss_pred CCCCCCC--------chhhhHHHHHH----------------hhcCCCee-----EEEecccCcCcchhHHHHHHhhccC
Q 009321 213 PWGPGRP--------GWHIECSAMSA----------------HYLSSKFD-----IHGGGIDLIFPHHENEIAQSCAACQ 263 (537)
Q Consensus 213 ~wG~g~P--------gW~iecs~~~~----------------~~~g~~~d-----ih~~G~Dl~fpH~~~~~a~~~a~~~ 263 (537)
.||.++| .|+.+...+.. .+| +.| +|++|+|+++||+.+|+|++.+++.
T Consensus 250 ~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~w--p~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~ 327 (560)
T 3h99_A 250 YFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYW--KKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNF 327 (560)
T ss_dssp CSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH--BTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB
T ss_pred cCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhC--cCCCCceeEEEeccccchhHHHHHHHHHHhCCC
Confidence 6899999 48765432211 123 233 9999999999999999999999877
Q ss_pred CCCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcC-CCcccCHHHHHHHHH--HHHHHHHHH
Q 009321 264 DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASD--AVFYIYQTL 339 (537)
Q Consensus 264 ~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~~~~--~l~~l~~~~ 339 (537)
++|.++ +.||||+++|+|||||+||+|+|.|++++||+|++||||++. +.. ++++|+++.+.+..+ .+.+++|.+
T Consensus 328 ~~p~~v-~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~ 406 (560)
T 3h99_A 328 RKPSNL-FVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA 406 (560)
T ss_dssp CCCSEE-EEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHH
T ss_pred CCCcEE-EEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 666666 556999999999999999999999999999999999999997 556 899999999886543 234455666
Q ss_pred HHHHHhcCccccC-CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchh---hhH
Q 009321 340 QDCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ---QQL 415 (537)
Q Consensus 340 ~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~---~~~ 415 (537)
+|+.+++.+...+ ......+++++..+.++.+.+.++| ++++++.|+.. +++|++.+|+|++..++|...+ ...
T Consensus 407 ~R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~~ 484 (560)
T 3h99_A 407 SRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRDA 484 (560)
T ss_dssp HTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCHH
T ss_pred HHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcHH
Confidence 5655544332111 1123468999999999999999999 89999999999 9999999999999999874322 122
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 416 SLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 416 ~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
.+..++..+..+|+.++.+|. |+|. .++++|+++
T Consensus 485 ~~~~~~~~~~~~l~~~~~lL~P~~P~-~aeei~~~L 519 (560)
T 3h99_A 485 DLQAICSMGINLFRVLMTYLKPVLPK-LTERAEAFL 519 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHc
Confidence 334445566788888888886 7776 667777665
No 12
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=7.8e-58 Score=500.13 Aligned_cols=413 Identities=16% Similarity=0.171 Sum_probs=314.9
Q ss_pred ccccccCCC-CcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHH
Q 009321 29 KELFTPIVR-GKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSL 105 (537)
Q Consensus 29 ~~~~~p~~~-~~v~~y~~gPt~y--g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~ 105 (537)
-.+|.|..+ +.-++|+|+|+|| |++||||+|++|++|+++|++|++||+|.|++|+||+|+||+.+|++.|++|+++
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~ 93 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDF 93 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHH
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHH
Confidence 356666543 3568999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCC------------CCCCC
Q 009321 106 SNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP------------NYGRL 171 (537)
Q Consensus 106 ~~~~~~~~~~~l~~L~i~~~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~------------~yg~l 171 (537)
+++|.+.|.++|++|||+ +|.+.|++ +|.+.+++++++|.++|++|++.+++|||+.+.. .+|..
T Consensus 94 ~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~ 172 (564)
T 3kfl_A 94 TTSVSSEFKQCFQEMNYD-MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKP 172 (564)
T ss_dssp HHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHcCCC-CCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCE
Confidence 999999999999999999 57888888 6999999999999999999999999999987521 12211
Q ss_pred cchhchhhhcCCCcccc----------cc--------ccCcccccc----------ccc--ccCCCCcc----ccCCCCC
Q 009321 172 SGQRLENNRAGERVAVD----------SR--------KRNPADFAL----------WKA--AKAGEPSW----DSPWGPG 217 (537)
Q Consensus 172 s~~~l~~~~~g~~~~~~----------~~--------k~~~~df~l----------wk~--~~~g~~~w----~~~wG~g 217 (537)
.+. ...+|..++.. .+ +.++ +|.. |.. .++-.+++ +..||++
T Consensus 173 c~~---~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGip 248 (564)
T 3kfl_A 173 CKV---SLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIP 248 (564)
T ss_dssp EEE---ETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCE
T ss_pred ecc---ccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCee
Confidence 000 00124333211 00 1111 2211 111 01123566 5689999
Q ss_pred CCc--------hhhhHHHH-HH-hh-------------c----CCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEE
Q 009321 218 RPG--------WHIECSAM-SA-HY-------------L----SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 218 ~Pg--------W~iecs~~-~~-~~-------------~----g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~ 270 (537)
+|+ |+.+.... +. .+ | .++.|+|+.|+|+++||..+|++++.+++..+|.++
T Consensus 249 iP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v- 327 (564)
T 3kfl_A 249 VPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERL- 327 (564)
T ss_dssp ETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCE-
T ss_pred cCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEE-
Confidence 996 87664322 11 11 1 236689999999999999999999999877677777
Q ss_pred EEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhh-cCcCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHhcC
Q 009321 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALS 347 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~--~l~~l~~~~~~~~~~l~ 347 (537)
++||||+.+|+|||||+||+|+|.|++++||+|++|||+++ .++.+|++||++.+.+..| .+.+|+|+++|+.+++.
T Consensus 328 ~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~ 407 (564)
T 3kfl_A 328 VSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI 407 (564)
T ss_dssp EEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT
T ss_pred EEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999 5999999999999998765 35677888888877665
Q ss_pred ccccC----CCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHH-HHHHH
Q 009321 348 PFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL-IESLR 422 (537)
Q Consensus 348 ~~~~~----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~-~~~l~ 422 (537)
..... ......|++++..+.++.+.+.++| ++++++.|+.. +++|++.+|+|++..++|...+.+..+ ...+.
T Consensus 408 ~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~ 485 (564)
T 3kfl_A 408 NVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIA-IFDVLRSLNAYVTENAPWKLVKMDTARLGTVLY 485 (564)
T ss_dssp STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHH
T ss_pred hcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHH
Confidence 21110 0112346889999999999999999 89999999999 999999999999999988543322223 23445
Q ss_pred HHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 423 KIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 423 ~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
.+...|+.++.+|. |+|. .++++|+++
T Consensus 486 ~l~~~l~~l~~lL~P~~P~-~ae~i~~~L 513 (564)
T 3kfl_A 486 VTMEGLRICTMFLQPVMPQ-KAKEIMDAL 513 (564)
T ss_dssp HHHHHHHHHHHHHTTTSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhH-HHHHHHHHc
Confidence 56667777777775 7776 567777665
No 13
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=2.8e-53 Score=465.57 Aligned_cols=382 Identities=13% Similarity=0.060 Sum_probs=291.1
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHH---H-----------------------
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI---I----------------------- 92 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki---~----------------------- 92 (537)
+|.|++|||||||++||||+|++|++|+++|+|++.||+|.++++++|+|..+ +
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 89999999999999999999999999999999999999999999999997321 2
Q ss_pred -H-------------------HHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhh--HHHHHHHHHHHHHCCc
Q 009321 93 -R-------------------RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDC 150 (537)
Q Consensus 93 -~-------------------~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~--~~~~~~~~~~L~~kG~ 150 (537)
. ++.+.|. .+++++.+.+.|.++|++|||. +|.++++|++ .+.+++++++|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~-~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNAR-YDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCC-CSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCE-eEEeccCCcccccchHHHHHHHHHHCCC
Confidence 1 1134555 4899999999999999999998 5889999977 8899999999999999
Q ss_pred ee-----eeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccc--cccc-------cccCCCCccccCCCC
Q 009321 151 AY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF--ALWK-------AAKAGEPSWDSPWGP 216 (537)
Q Consensus 151 ay-----~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df--~lwk-------~~~~g~~~w~~~wG~ 216 (537)
+| +.+|.+|+++..+.....+....+ .-.+|... | ...|+ ++|| ..+ ..|.+|||
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi-~ksdG~~~----Y--~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~- 330 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPGLEDPFFVL-LRSNGTAT----Y--YAKDIAFQFWKMGILEGLRFR---PYENPYYP- 330 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCSCSCCEEEE-ECTTSCBC----H--HHHHHHHHHHHTTSSCCCEEE---ECCCSSCT-
T ss_pred cccCcccCcCCCEEEechhcCCCCCCCceEE-EecCCceE----E--ecchHHHHHHHhhhhhhhhhh---hhhcCcch-
Confidence 99 778888887654321111111111 01122211 1 13455 7885 322 24788998
Q ss_pred CCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCC-ceEEEEe--eeeeeCCccccccCCCcccH
Q 009321 217 GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLGNFFTI 293 (537)
Q Consensus 217 g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~-~~~~~h~--g~v~~~G~KMSKS~Gn~i~~ 293 (537)
+|+||++|+.|....++..++||+++.++.|+++ .+...+++ .++ ++.|.|. |||+++|+|||||+||+|++
T Consensus 331 -r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~---~~~~~alG-~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l 405 (592)
T 1iq0_A 331 -GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV---RAALALAG-YPALAEKAHHLAYETVLLEGRQMSGRKGLAVSV 405 (592)
T ss_dssp -TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH---HHHHHHTT-CHHHHTTEEEEEECCEEETTBCSCC----CCBH
T ss_pred -hhcccccCcccCCCCCCEEEEEEeccHHHHHHHH---HHHHHHcC-CCCCCCcEEEEEeeEEEcCCCcccCCCCCccCH
Confidence 7999999999976667777888887544333222 12223333 334 3345666 77999999999999999999
Q ss_pred HHHHHH-------------------------cCchhhHHHHhhcCcCCCcccCHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 009321 294 RQITER-------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALS 347 (537)
Q Consensus 294 ~dll~~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~~~~~~~l~ 347 (537)
+|++++ ++++++|||+|+.+++++++||++.+.+..+ ...+++|+++|++++++
T Consensus 406 ~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~ 485 (592)
T 1iq0_A 406 DEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILR 485 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999998876 56689999999999987
Q ss_pred ccccCCC-----CCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhh-------cccCch-hhh
Q 009321 348 PFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML-------KKKQPK-QQQ 414 (537)
Q Consensus 348 ~~~~~~~-----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~-------~~~~~~-~~~ 414 (537)
++...+. ..+.+..|+..+.++++.+.+++ ++++++.++.. |++|++.+|+||+.+ +++... ...
T Consensus 486 k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~ 563 (592)
T 1iq0_A 486 KAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLR 563 (592)
T ss_dssp HHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHH
T ss_pred hhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHHH
Confidence 7532111 11224567888889999999999 89986666666 999999999999999 544321 224
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 415 LSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 415 ~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.+|+.++.++..+|.+++.+|||.++
T Consensus 564 ~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 564 ELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 57899999999999999999999764
No 14
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.1e-50 Score=446.40 Aligned_cols=383 Identities=17% Similarity=0.141 Sum_probs=290.5
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHH-------------------------
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK------------------------- 90 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~k------------------------- 90 (537)
.+++|.||+|||||+|++||||+|++|++|+|+|+|++.||+|.++++++|+|.+
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 4679999999999999999999999999999999999999999999999998544
Q ss_pred --------------HHHHHHH-------------------cC-CChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhh--
Q 009321 91 --------------IIRRAND-------------------LG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH-- 134 (537)
Q Consensus 91 --------------i~~~a~~-------------------~g-~~~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~-- 134 (537)
+...+++ .| ..|+++++.+.+.|.++|++|||. +|.++++|++
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~-~D~~~~es~~~~ 275 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVK-YDLLVWESDIVR 275 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCC-CSEEEEHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCc-cccccCcCcccc
Confidence 2222222 23 566999999999999999999998 5999999977
Q ss_pred HHHHHHHHHHHHHCCcee-----eeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccc--cccc------
Q 009321 135 MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF--ALWK------ 201 (537)
Q Consensus 135 ~~~~~~~~~~L~~kG~ay-----~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df--~lwk------ 201 (537)
.+.+++++++|.++|++| +.+|.+|+++..+.....+... +..-.+|... | ..+|+ ++||
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~~~~-v~~ksdG~~~----Y--~~~Diay~~~K~~ll~~ 348 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPIL-VLRRSDGTAT----Y--TGKDIAYHLWKFGKIDV 348 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCEE-EEECTTSCBC----H--HHHHHHHHHHHTTCSCC
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCccccCce-EEEecCCccc----c--chhhHHHHHHHhhcccc
Confidence 789999999999999999 7788999887654211111111 1111122210 0 13466 6785
Q ss_pred --cccCC-CCccc-cCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCC-ceEEEEe--e
Q 009321 202 --AAKAG-EPSWD-SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHN--G 274 (537)
Q Consensus 202 --~~~~g-~~~w~-~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~-~~~~~h~--g 274 (537)
..++. .+.|. +|||+|+|| +...++..++||++|.|+.|.+. .+.+.++ |.++ ++.|.|. |
T Consensus 349 ~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d~~IyV~g~~q~~~~~~l---~~~l~~l-G~~~~~~~~~h~~~g 416 (629)
T 2zue_A 349 DLLYKEWDSTTWTTAPDGKSMPN--------KFGNANIVINVIGAEQKHPQLAI---KYALQLL-GFEDAAANLYHLAYE 416 (629)
T ss_dssp CCEEEECSSSCEEEEEEEEECTT--------SSCCCSEEEEEEEGGGHHHHHHH---HHHHHHT-TCHHHHHTEEEEEEC
T ss_pred cccCCcccccccccCCCCCCCCC--------ccCCCCcEEEEEeCcHhhHHHHH---HHHHHHc-CCCCCCCeEEEEEee
Confidence 33322 23454 699999998 11234556778887655322221 1222333 3344 4445666 8
Q ss_pred eeeeCCccccccCC--CcccHHHHHHH---------------------------cCchhhHHHHhhcCcCCCcccCHHHH
Q 009321 275 HVTNNNEKMSKSLG--NFFTIRQITER---------------------------YHPLALRHFLISAHYRSPLNYSVLQL 325 (537)
Q Consensus 275 ~v~~~G~KMSKS~G--n~i~~~dll~~---------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l 325 (537)
||+++|+|||||+| |+|+++|++++ +|++++||++|+.+++++++||++.+
T Consensus 417 ~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~ 496 (629)
T 2zue_A 417 HVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDV 496 (629)
T ss_dssp CEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHH
T ss_pred eEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHH
Confidence 89999999999999 99999999998 99999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHhcCccccCC---------------CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHH
Q 009321 326 DSASD-AVFYIYQTLQDCEVALSPFQEHG---------------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 389 (537)
Q Consensus 326 ~~~~~-~l~~l~~~~~~~~~~l~~~~~~~---------------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~ 389 (537)
.+..+ +..+++|+++|++++++++...+ ...+.+..|+..+.++++.+.+++ ++++ |+.++.
T Consensus 497 ~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~-p~~l~~ 574 (629)
T 2zue_A 497 LNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVK-PHLIAW 574 (629)
T ss_dssp SCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTC-THHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCC-HHHHHH
Confidence 87765 35589999999999987643211 012234568888999999999999 8887 555555
Q ss_pred HHHHHHHHHHHHHhhhcccCch-hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 390 AFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 390 ~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
||++|++.+|+||+.++++... ....+|+.++.++..+|.++|.+|||.++
T Consensus 575 yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 575 FANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 5999999999999999877542 22457899999999999999999999764
No 15
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=6.5e-47 Score=428.52 Aligned_cols=403 Identities=18% Similarity=0.204 Sum_probs=293.5
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHH----cCCChH------------
Q 009321 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENPL------------ 103 (537)
Q Consensus 40 v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~----~g~~~~------------ 103 (537)
..++.+.|+|+|.|||||++++++.|+++||.|++||+|.|+.|+|+||.+|..++.+ .|++++
T Consensus 36 f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~ 115 (862)
T 1gax_A 36 FVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVW 115 (862)
T ss_dssp EEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHH
T ss_pred EEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHH
Confidence 3444445666799999999999999999999999999999999999999998877763 476654
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCC-ccc-hh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCC--------------
Q 009321 104 SLSNRYCQEYLVDMADLQCLPPTY-QPR-VS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 165 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~i~~~~~-~~r-~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~-------------- 165 (537)
+++++|.+.+.+.+++||++. |. .++ |+ +|...++.+|.+|.++|++|++...|+||+.+.
T Consensus 116 ~~~~~~~~~~~~q~~rlG~s~-Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~ 194 (862)
T 1gax_A 116 QWKEESGGTILKQLKRLGASA-DWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTP 194 (862)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCEE
T ss_pred HHHHHHHHHHHHHHHHhCccc-cCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCcccccccccccccc
Confidence 679999999999999999985 42 111 33 799999999999999999999999999998751
Q ss_pred ---------------------------------------------------CCCCCCcchhch---hhhcCCCccccccc
Q 009321 166 ---------------------------------------------------PNYGRLSGQRLE---NNRAGERVAVDSRK 191 (537)
Q Consensus 166 ---------------------------------------------------~~yg~ls~~~l~---~~~~g~~~~~~~~k 191 (537)
|.+|+-.+.... ++..|+.+-....-
T Consensus 195 g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pa 274 (862)
T 1gax_A 195 GKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPA 274 (862)
T ss_dssp EEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCGG
T ss_pred ceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecCC
Confidence 111110000000 00001000000000
Q ss_pred cCcccccc--------------------------------------------------------------ccc-------
Q 009321 192 RNPADFAL--------------------------------------------------------------WKA------- 202 (537)
Q Consensus 192 ~~~~df~l--------------------------------------------------------------wk~------- 202 (537)
+++.||.+ |+.
T Consensus 275 hd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~ 354 (862)
T 1gax_A 275 HDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYA 354 (862)
T ss_dssp GCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEE
T ss_pred CCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEE
Confidence 00000000 000
Q ss_pred ------------------------------------------ccCCCCccccCCCCCCCchhhh-HHHH-----------
Q 009321 203 ------------------------------------------AKAGEPSWDSPWGPGRPGWHIE-CSAM----------- 228 (537)
Q Consensus 203 ------------------------------------------~~~g~~~w~~~wG~g~PgW~ie-cs~~----------- 228 (537)
.++-.+++...||.++|.|+.+ |..+
T Consensus 355 ~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~~ 434 (862)
T 1gax_A 355 IFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLED 434 (862)
T ss_dssp ECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTTCC
T ss_pred ecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEecccccccc
Confidence 0112245566899999998753 3110
Q ss_pred -----------------------HHh-----hcC-----------CCeeEEEecccCcCcchhHHHHHHhhccCC-CCce
Q 009321 229 -----------------------SAH-----YLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVS 268 (537)
Q Consensus 229 -----------------------~~~-----~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~ 268 (537)
.+. .+| .|.|+|++|+|++|+|+.+.++++.++.+. ||.+
T Consensus 435 ~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~ 514 (862)
T 1gax_A 435 PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKT 514 (862)
T ss_dssp CCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSE
T ss_pred chhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccE
Confidence 000 012 378999999999999999999999887775 6788
Q ss_pred EEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009321 269 YWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 346 (537)
Q Consensus 269 ~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l 346 (537)
+++| |+|+. +|+|||||+||+|+|.|++++||+|++|||+++. +++++++||++.+.+..+.+.+++++++.+...+
T Consensus 515 v~~h-G~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~ 593 (862)
T 1gax_A 515 VLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSR 593 (862)
T ss_dssp EEEE-CCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEe-eeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8775 88884 9999999999999999999999999999999996 9999999999999999998889998876555444
Q ss_pred Ccccc-CCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHHHHH
Q 009321 347 SPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRK 423 (537)
Q Consensus 347 ~~~~~-~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~l~~ 423 (537)
..... .......|+++++.++++...+.++| ++|+++.|+.. |++|+ ...|.|++..+++.... +......
T Consensus 594 ~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~~----~~~~~~~ 667 (862)
T 1gax_A 594 EGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPALKAG----NAHTLRT 667 (862)
T ss_dssp SSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHTT----BHHHHHH
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhcc----HHHHHHH
Confidence 33211 01123356899999999999999999 99999999999 99999 45799998877652111 1223345
Q ss_pred HHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 424 IENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 424 ~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+..+|..++.+|. |+|. .++++|+.+.
T Consensus 668 l~~~l~~~~~lL~P~~P~-~aEeiw~~L~ 695 (862)
T 1gax_A 668 LEEVLAVLLKLLHPMMPF-LTSELYQALT 695 (862)
T ss_dssp HHHHHHHHHHHHTTTSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhH-HHHHHHHhcC
Confidence 6667777888875 8887 7899999885
No 16
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=5.3e-48 Score=422.01 Aligned_cols=360 Identities=13% Similarity=0.061 Sum_probs=285.1
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhh---------------------------
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD--------------------------- 88 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d--------------------------- 88 (537)
.+++|.|++|||||+|++||||+|++|++|+++|+|++.||+|.++++++|+|
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 46799999999999999999999999999999999999999999999999943
Q ss_pred ---------------------HHHHHHHHH------cCCC-----hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhH-
Q 009321 89 ---------------------DKIIRRAND------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM- 135 (537)
Q Consensus 89 ---------------------~ki~~~a~~------~g~~-----~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~- 135 (537)
++|+.+|++ .|.+ |+.+++.+.+.|.++|++|||.+ |.+++.|+|+
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~ 299 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhh
Confidence 555666765 4766 78999999999999999999984 9999999888
Q ss_pred HHHHHHHHHHHHCCceeeeccceeecCCCCCCCCC-CcchhchhhhcCCCccccccccCcccc--cccccccCCCCcccc
Q 009321 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR-LSGQRLENNRAGERVAVDSRKRNPADF--ALWKAAKAGEPSWDS 212 (537)
Q Consensus 136 ~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~-ls~~~l~~~~~g~~~~~~~~k~~~~df--~lwk~~~~g~~~w~~ 212 (537)
+.+.++++.|.++|++|+.+|.+||++.++ |+ +.+..+ .-.+|... | .+.|+ ++||..
T Consensus 300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~~~d~~v~-~KsDG~~~----Y--~t~Dia~~~~k~~--------- 360 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NKKLGKAIV-QKSDGTTL----Y--LTRDVGAAMDRYE--------- 360 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CTTTCEEEE-ECTTSCCC----H--HHHHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHhCCCEEEECCcEEEEeccc---CCCCCceeE-eccCCCcC----C--CCCcHHHHHHHHh---------
Confidence 899999999999999999999999988765 32 110000 00011110 0 02233 334321
Q ss_pred CCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeeeCCccccccCCCccc
Q 009321 213 PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFT 292 (537)
Q Consensus 213 ~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~ 292 (537)
...++..++||++|.|+.|+++ .+...+++ .+++++|.|.+|.+++ |||||+||+|+
T Consensus 361 -----------------~~~~d~~IyV~g~~q~~~f~q~---~~~~~~lG-~~~~~~~~Hv~fg~v~--kMSkR~G~~v~ 417 (607)
T 1f7u_A 361 -----------------KYHFDKMIYVIASQQDLHAAQF---FEILKQMG-FEWAKDLQHVNFGMVQ--GMSTRKGTVVF 417 (607)
T ss_dssp -----------------HHCCSEEEEECCGGGHHHHHHH---HHHHHHTT-CGGGGGEEEECCCCEE--SCCGGGTCCCB
T ss_pred -----------------hcCCCcEEEEEcChHhhHHHHH---HHHHHHcC-CCcCcEEEEecccccc--cccCCCCCccc
Confidence 1135567889999888777665 23333444 3567779999997776 69999999999
Q ss_pred HHHHHHHcC----------c------------------hhhHHHHhhcCcCCCcccCHHHHHHHHHHH-HHHHHHHHHHH
Q 009321 293 IRQITERYH----------P------------------LALRHFLISAHYRSPLNYSVLQLDSASDAV-FYIYQTLQDCE 343 (537)
Q Consensus 293 ~~dll~~~~----------~------------------d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l-~~l~~~~~~~~ 343 (537)
++|+++++. + .++||++|+.+++++++||++.+.++.+.. .|+||+++|++
T Consensus 418 L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~ 497 (607)
T 1f7u_A 418 LDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLR 497 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHH
Confidence 999999873 3 489999999999999999999999887643 59999999999
Q ss_pred HhcCcccc-C-------C---CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCch-
Q 009321 344 VALSPFQE-H-------G---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK- 411 (537)
Q Consensus 344 ~~l~~~~~-~-------~---~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~- 411 (537)
++++++.. . . ..++.+..|+..+.++++.+.+++ ++++ |+.++.||++|++.+|+||+.+++....
T Consensus 498 SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~ 575 (607)
T 1f7u_A 498 SVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHE-PTTVVTYLFKLTHQVSSCYDVLWVAGQTE 575 (607)
T ss_dssp HHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCC-HHHHHHHHHHHHHHHHHHHHHCCSTTSCH
T ss_pred HHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCH
Confidence 99987621 0 0 012234568888999999999998 7876 7778888999999999999999987543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 412 QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 412 ~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
+...+|+.++.++..+|++++.+|||.++
T Consensus 576 ~~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 576 ELATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 23457999999999999999999999764
No 17
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=1e-47 Score=416.59 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=222.8
Q ss_pred EEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhh--HHH---HHHHHHc--CCCh----------
Q 009321 42 MYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD--DKI---IRRANDL--GENP---------- 102 (537)
Q Consensus 42 ~y~~--gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d--~ki---~~~a~~~--g~~~---------- 102 (537)
.|+| ||||||++||||+|++|++|+++|+|+++|++|.|+.+|||+| +|| +.+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 7888 9999999999999999999999999999999999999999999 888 7777777 9988
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchhh-hHH-HHHHHHHHHHHCC----------------ceeeeccceeecCC-
Q 009321 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HME-QIKDMITQIINND----------------CAYVVEGDVFFAVE- 163 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~-~~~-~~~~~~~~L~~kG----------------~ay~~~~~v~f~~~- 163 (537)
++++++|.+.|.++|++|||. +|.+ |+|+ |++ .+++++++|+++| ++|.. + ||++.
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~-~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~ 175 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIE-VDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMV 175 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCC-CEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCC-ceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccc
Confidence 999999999999999999997 6877 9999 998 8999999999999 55543 2 55543
Q ss_pred CCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCC-CCCCCchhhhHHHHHHhhcCCCeeEEEe
Q 009321 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 164 ~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~w-G~g~PgW~iecs~~~~~~~g~~~dih~~ 242 (537)
-|+.||++... + +.+. .++.+|.+ +.|.+.|.++| |.|+|+||++| +|...+||..+| ++
T Consensus 176 ~~~~~~~~~~~-~---------~~~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 176 YCPEHRREAEI-I---------EWDG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PA 236 (523)
T ss_dssp ECTTTCCEECE-E---------EECS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CE
T ss_pred cchhhCCcccc-c---------ccCC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CC
Confidence 26777775321 1 1111 14457766 46888999999 99999999999 788888986665 89
Q ss_pred cccCcCcc----hhHHHHHHhhccCCCCceEEEEeeeeeeC--CccccccCCCcccHHHHHHHcCchhhHHHHhhcCcCC
Q 009321 243 GIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVTNN--NEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316 (537)
Q Consensus 243 G~Dl~fpH----~~~~~a~~~a~~~~~~~~~~~h~g~v~~~--G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~ 316 (537)
|+||++|| |.++++| .+++..+| +|+|+|||+++ |+|||||+||+|++.++++.|+||++||||++.++++
T Consensus 237 G~Dh~~~h~s~~~~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~ 313 (523)
T 1irx_A 237 GKDHLVAGSSYDTGKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNK 313 (523)
T ss_dssp EHHHHSTTSHHHHHHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTS
T ss_pred CcCccCCCcchhhHHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCC
Confidence 99999999 8899997 46655444 57999999998 8999999999999999999999999999999999999
Q ss_pred CcccCHH-HHHHHHHHHHHHHHHH
Q 009321 317 PLNYSVL-QLDSASDAVFYIYQTL 339 (537)
Q Consensus 317 ~~~fs~~-~l~~~~~~l~~l~~~~ 339 (537)
+++||++ .+.++.+.+.++++++
T Consensus 314 ~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 314 EIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp CEEECCSTTHHHHHHHHHHHHHHH
T ss_pred CceeCcchhHHHHHHHHHHHHHHH
Confidence 9999999 8998888777776544
No 18
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2.1e-45 Score=417.95 Aligned_cols=407 Identities=15% Similarity=0.125 Sum_probs=292.0
Q ss_pred CcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHc-CCC-------------
Q 009321 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GEN------------- 101 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~-g~~------------- 101 (537)
++-++|++ .|+|+|.+||||+++++++|+++||.|++|++|.|+.|+|+||.+|...|.+. |.+
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f 115 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF 115 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHH
Confidence 33344444 45666999999999999999999999999999999999999999999999885 876
Q ss_pred ---hHHHHHHHHHHHHHHHHHcCCCC-CCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchh
Q 009321 102 ---PLSLSNRYCQEYLVDMADLQCLP-PTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQR 175 (537)
Q Consensus 102 ---~~~~~~~~~~~~~~~l~~L~i~~-~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~ 175 (537)
+++++++|.+.+.+.+++||+.. .+.+.+|+ +|...++.+|.+|.++|++|++...|+||+.+-.. |+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~---Lad~e 192 (821)
T 1ile_A 116 NQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTP---LSSHE 192 (821)
T ss_dssp HHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEE---CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCc---ccHhH
Confidence 35788899999999999999642 34555554 78899999999999999999999999999874210 11100
Q ss_pred ch------------------------------------------------------------------------------
Q 009321 176 LE------------------------------------------------------------------------------ 177 (537)
Q Consensus 176 l~------------------------------------------------------------------------------ 177 (537)
+.
T Consensus 193 v~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~ 272 (821)
T 1ile_A 193 VALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEG 272 (821)
T ss_dssp HHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTT
T ss_pred hhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhC
Confidence 00
Q ss_pred ----------hh---------------------------hcCCCccccccccCccccc----------------------
Q 009321 178 ----------NN---------------------------RAGERVAVDSRKRNPADFA---------------------- 198 (537)
Q Consensus 178 ----------~~---------------------------~~g~~~~~~~~k~~~~df~---------------------- 198 (537)
++ ..|+.+-......++.||.
T Consensus 273 ~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~ 352 (821)
T 1ile_A 273 TQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE 352 (821)
T ss_dssp SCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG
T ss_pred cEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc
Confidence 00 0000000000000001110
Q ss_pred ----------------------------------------------------------------------ccccc-----
Q 009321 199 ----------------------------------------------------------------------LWKAA----- 203 (537)
Q Consensus 199 ----------------------------------------------------------------------lwk~~----- 203 (537)
-|...
T Consensus 353 ~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~ 432 (821)
T 1ile_A 353 PFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEG 432 (821)
T ss_dssp GGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTT
T ss_pred CcCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHh
Confidence 01000
Q ss_pred ---------cCCCCccccCCCCCCCchhhh---------------------------------------H----------
Q 009321 204 ---------KAGEPSWDSPWGPGRPGWHIE---------------------------------------C---------- 225 (537)
Q Consensus 204 ---------~~g~~~w~~~wG~g~PgW~ie---------------------------------------c---------- 225 (537)
++-.+++...||.++|.|+.+ |
T Consensus 433 ~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~ 512 (821)
T 1ile_A 433 RYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVP 512 (821)
T ss_dssp TTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECS
T ss_pred HHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcc
Confidence 011134556799999977421 1
Q ss_pred --------HHHH-HhhcC------------CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCcc
Q 009321 226 --------SAMS-AHYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEK 282 (537)
Q Consensus 226 --------s~~~-~~~~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~K 282 (537)
|... ...++ .+.|+|++|+||+++|+.+..+++.++.+. ||.++|+| ||++. +|+|
T Consensus 513 dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~K 591 (821)
T 1ile_A 513 YVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQK 591 (821)
T ss_dssp CBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSC
T ss_pred cccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCC
Confidence 1100 00112 378999999999999999999999888765 77899886 77775 9999
Q ss_pred ccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCHHHHHHH-HHHHHHHHHHHHHHHHh--cCcccc-----CC
Q 009321 283 MSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEVA--LSPFQE-----HG 353 (537)
Q Consensus 283 MSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~-~~~l~~l~~~~~~~~~~--l~~~~~-----~~ 353 (537)
||||+||+|+|.|++++||+|++|||+++. +++++++||++.+.++ .+.+.+|+++++++... +..... ..
T Consensus 592 MSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~ 671 (821)
T 1ile_A 592 MSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPE 671 (821)
T ss_dssp CCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCST
T ss_pred CCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccc
Confidence 999999999999999999999999999997 6999999999999984 66677888877664321 111100 01
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHH--HHHHHHHhhhc--ccCchhhhHHHHHHHHHHHHHHH
Q 009321 354 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLK--KKQPKQQQLSLIESLRKIENEVK 429 (537)
Q Consensus 354 ~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~ 429 (537)
.....+++++..+..+...+.++| ++|+++.|++. |++|+ ...|.|++..+ +|...+ ...+......+..+|+
T Consensus 672 ~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~ 748 (821)
T 1ile_A 672 KRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARA-LRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALV 748 (821)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHH
Confidence 112346788999999999999999 89999999999 99999 56788887654 353321 1122333445667788
Q ss_pred HHHhhcc-cCCCCChHHHHHHHHH
Q 009321 430 EVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 430 ~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
.++.+|. |+|. .++++|+.+..
T Consensus 749 ~~~~lLaP~~P~-~aeelw~~L~~ 771 (821)
T 1ile_A 749 LVATLAAPFTPF-LAEVLWQNLVR 771 (821)
T ss_dssp HHHHHHTTTSTT-HHHHHHHHHTT
T ss_pred HHHHHcCCccch-HHHHHHHhccc
Confidence 8888885 8888 79999998853
No 19
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-44 Score=410.01 Aligned_cols=205 Identities=18% Similarity=0.161 Sum_probs=164.9
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhh-c
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 312 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~ 312 (537)
.++|+|++|+||+||||.++++++.++.+. ++++.|+|||||+++|+|||||+||+|+|.|++++||+|++|||+++ .
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 378999999999999999999999887764 66788899999999999999999999999999999999999999985 6
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHH
Q 009321 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (537)
Q Consensus 313 ~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~ 392 (537)
+++++++||++.+.++.+.+.+++++++++..... .........+++++..+.++.+.+.++| ++|+++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEV--KGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCCC--CSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccC--cccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 99999999999999999999999988876543210 0001112346789999999999999999 99999999985257
Q ss_pred HHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009321 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 393 ~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
.+++.+|+|++..+.. . +......+..+|+.++.+|. |+|. .++++|+++
T Consensus 759 ~l~~~~n~yi~~~k~~----~---~~~~~~~l~~~l~~l~~lLaP~~P~-~aEelw~~L 809 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGR----D---DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKL 809 (810)
T ss_dssp HHHHHHHHHHHHTTTC----C---CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCc----c---hhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhc
Confidence 9999999999876521 1 11112345567777777775 7776 677777654
No 20
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.2e-44 Score=413.31 Aligned_cols=410 Identities=17% Similarity=0.145 Sum_probs=297.5
Q ss_pred CcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCCh------------H
Q 009321 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENP------------L 103 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~------------~ 103 (537)
++-++|+. .|.|+|.+||||++++++.|+++||.|++|++|.|+.|+|+||.+|..+|.+.|+++ .
T Consensus 46 ~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~ 125 (917)
T 1ffy_A 46 GNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCK 125 (917)
T ss_dssp TSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHH
T ss_pred CCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHH
Confidence 33344444 456669999999999999999999999999999999999999999999999999875 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCCCC-------CCC----
Q 009321 104 SLSNRYCQEYLVDMADLQCLP-PTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NYG---- 169 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~i~~-~~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~-------~yg---- 169 (537)
+++++|++.+.+++++||+.. .+.+.+|+ +|...++.+|.+|.++|++|++...|+||+.+-. .|+
T Consensus 126 ~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~ 205 (917)
T 1ffy_A 126 EFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRS 205 (917)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccC
Confidence 899999999999999999974 24555555 7889999999999999999999999999987510 000
Q ss_pred ------------------C--------------------Ccch---------h---------------------ch--hh
Q 009321 170 ------------------R--------------------LSGQ---------R---------------------LE--NN 179 (537)
Q Consensus 170 ------------------~--------------------ls~~---------~---------------------l~--~~ 179 (537)
. +.+. + .. .+
T Consensus 206 ~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~ 285 (917)
T 1ffy_A 206 ASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLE 285 (917)
T ss_dssp EEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCC
T ss_pred ceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeee
Confidence 0 0000 0 00 00
Q ss_pred --hcCCC----------------------cccc--------ccccCccccccccc-------------------------
Q 009321 180 --RAGER----------------------VAVD--------SRKRNPADFALWKA------------------------- 202 (537)
Q Consensus 180 --~~g~~----------------------~~~~--------~~k~~~~df~lwk~------------------------- 202 (537)
..|.. |+.+ ..-+++.||..+++
T Consensus 286 ~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~ 365 (917)
T 1ffy_A 286 KEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGM 365 (917)
T ss_dssp CCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSS
T ss_pred eeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCc
Confidence 00000 0000 00011112211111
Q ss_pred -----------------------------------cc-------------------------------------------
Q 009321 203 -----------------------------------AK------------------------------------------- 204 (537)
Q Consensus 203 -----------------------------------~~------------------------------------------- 204 (537)
.+
T Consensus 366 ~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l 445 (917)
T 1ffy_A 366 FYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMV 445 (917)
T ss_dssp CSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHH
Confidence 00
Q ss_pred ----CCCCccccCCCCCCCchhhh----------------------------------------H---------------
Q 009321 205 ----AGEPSWDSPWGPGRPGWHIE----------------------------------------C--------------- 225 (537)
Q Consensus 205 ----~g~~~w~~~wG~g~PgW~ie----------------------------------------c--------------- 225 (537)
+-.+++...||.++|-|+.+ |
T Consensus 446 ~~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~l 525 (917)
T 1ffy_A 446 RDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIM 525 (917)
T ss_dssp HHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEE
T ss_pred hcCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCc
Confidence 01123455799999977532 0
Q ss_pred -----HHHHH-hh------cCCCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeee-CCccccccCCCcc
Q 009321 226 -----SAMSA-HY------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFF 291 (537)
Q Consensus 226 -----s~~~~-~~------~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i 291 (537)
|..+. .. +..|.|+|++|+|++++|.-..++++.++.+. |+.++++| |||+. +|+|||||+||+|
T Consensus 526 D~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV 604 (917)
T 1ffy_A 526 DVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVI 604 (917)
T ss_dssp CHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCC
T ss_pred CeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcC
Confidence 00000 00 12468999999999988776777777777665 67888665 99997 9999999999999
Q ss_pred cHHHHHHHcCchhhHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCcccc---C---CCCCCCChHHHHH
Q 009321 292 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE---H---GKTARINPAAEDC 365 (537)
Q Consensus 292 ~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~---~---~~~~~~~~~l~~~ 365 (537)
+|.|++++||+|++|||+++++++++++||++.+.++.+.+.+|+++++.+.+.+..... . ......|++++..
T Consensus 605 ~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~ 684 (917)
T 1ffy_A 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNR 684 (917)
T ss_dssp CHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHH
T ss_pred ChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999988888999988877665543211 0 0112346889999
Q ss_pred HHHHHHHHHHHHHcccCchhhhHHHHHHHHH--HHHHHHhhhcccCc--hhhhHHHHHHHHHHHHHHHHHHhhcc-cCCC
Q 009321 366 INKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPP 440 (537)
Q Consensus 366 l~~~~~~v~~am~dd~n~~~al~~~L~~l~~--~~N~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~ 440 (537)
+.++.+.+.++| ++|+++.|++. |++|+. ..|.|++..+++.. .+....+......+..+|..++.+|. |+|.
T Consensus 685 l~~~~~~v~~a~-e~~~f~~a~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~ 762 (917)
T 1ffy_A 685 LREFTASTINNY-ENFDYLNIYQE-VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH 762 (917)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 999999999999 99999999999 999998 45778776665321 11122333344455667777788885 8887
Q ss_pred CChHHHHHHHH
Q 009321 441 GAYSEVLQQLK 451 (537)
Q Consensus 441 ~~~~~~~~~~~ 451 (537)
.++++|+.+.
T Consensus 763 -~aEeiw~~l~ 772 (917)
T 1ffy_A 763 -TAEEVWSHTP 772 (917)
T ss_dssp -HHHHHHTTST
T ss_pred -HHHHHHHHcc
Confidence 7899998875
No 21
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.8e-43 Score=399.11 Aligned_cols=407 Identities=15% Similarity=0.144 Sum_probs=283.1
Q ss_pred cccccC-CCCcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHH
Q 009321 30 ELFTPI-VRGKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106 (537)
Q Consensus 30 ~~~~p~-~~~~v~~y~~--gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~ 106 (537)
..|.+. ++++.++|++ .|+|+|++||||+|+++++|+++||+|++||+|.|++|+|++|.+|+.+|.+.|.++.+++
T Consensus 42 ~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~ 121 (880)
T 4arc_A 42 RTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWT 121 (880)
T ss_dssp TTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHH
T ss_pred CCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHH
Confidence 345543 2356677776 5777799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeccceeecCCC-------------CCCCCC
Q 009321 107 NRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGR 170 (537)
Q Consensus 107 ~~~~~~~~~~l~~L~i~~~-~~~~r~s--~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-------------~~~yg~ 170 (537)
+++++.|.++|++||++.+ +.+.+++ +|.+.++++|.+|.++|++|++...|+||+.+ |+.||.
T Consensus 122 ~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~ 201 (880)
T 4arc_A 122 YDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDT 201 (880)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------------------------
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCC
Confidence 9999999999999999853 1344443 79999999999999999999999999999874 444442
Q ss_pred -------------Ccc---h---hchhh---------------------------hc----------------CCC----
Q 009321 171 -------------LSG---Q---RLENN---------------------------RA----------------GER---- 184 (537)
Q Consensus 171 -------------ls~---~---~l~~~---------------------------~~----------------g~~---- 184 (537)
|+. . .++.+ .. |.+
T Consensus 202 ~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav 281 (880)
T 4arc_A 202 KVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAV 281 (880)
T ss_dssp -----CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEE
T ss_pred ccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEE
Confidence 000 0 00000 00 000
Q ss_pred --------------------------------------------------------c--------cccc--------ccc
Q 009321 185 --------------------------------------------------------V--------AVDS--------RKR 192 (537)
Q Consensus 185 --------------------------------------------------------~--------~~~~--------~k~ 192 (537)
+ +.+. .-+
T Consensus 282 ~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pah 361 (880)
T 4arc_A 282 AAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGH 361 (880)
T ss_dssp CTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTT
T ss_pred CCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccCC
Confidence 0 0000 001
Q ss_pred Ccccccccccc------------------------cCC-----------------------------------------C
Q 009321 193 NPADFALWKAA------------------------KAG-----------------------------------------E 207 (537)
Q Consensus 193 ~~~df~lwk~~------------------------~~g-----------------------------------------~ 207 (537)
+++||..+++. .+| .
T Consensus 362 d~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~ 441 (880)
T 4arc_A 362 DQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWG 441 (880)
T ss_dssp CHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEE
T ss_pred CHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccce
Confidence 12233222110 000 0
Q ss_pred CccccCCCCCCCchhhh-HHHH----------------------------------------------------HHhhc-
Q 009321 208 PSWDSPWGPGRPGWHIE-CSAM----------------------------------------------------SAHYL- 233 (537)
Q Consensus 208 ~~w~~~wG~g~PgW~ie-cs~~----------------------------------------------------~~~~~- 233 (537)
+++..-||.++|-||.+ |... |+.||
T Consensus 442 iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~ 521 (880)
T 4arc_A 442 VSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYA 521 (880)
T ss_dssp CEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHH
T ss_pred eeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcHHHH
Confidence 12234599999998854 3100 11110
Q ss_pred ------------C-------CCeeEEEecccCcCcchhHHHHH---Hhh---ccC-CCCceEEEEeeeee--------eC
Q 009321 234 ------------S-------SKFDIHGGGIDLIFPHHENEIAQ---SCA---ACQ-DSNVSYWMHNGHVT--------NN 279 (537)
Q Consensus 234 ------------g-------~~~dih~~G~Dl~fpH~~~~~a~---~~a---~~~-~~~~~~~~h~g~v~--------~~ 279 (537)
. .|+|+++||+||..-|..+.... +.. +.+ .|+.++ +++|||+ .+
T Consensus 522 r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmVl~~~~~~~d~~ 600 (880)
T 4arc_A 522 RYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMVLADAFYYVGEN 600 (880)
T ss_dssp HTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCEEEEEEEEECTT
T ss_pred hhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceEeecceeccccC
Confidence 0 27899999999888776553322 221 123 455666 7789996 25
Q ss_pred Cc------------------------------------cccccCCCcccHHHHHHHcCchhhHHHHhhc-CcCCCcccCH
Q 009321 280 NE------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSV 322 (537)
Q Consensus 280 G~------------------------------------KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~ 322 (537)
|+ |||||+||+|+|.|++++||+|++|||+++. +++++++||+
T Consensus 601 G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~ 680 (880)
T 4arc_A 601 GERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQE 680 (880)
T ss_dssp SCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCH
T ss_pred CcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCH
Confidence 66 9999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccc-cCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHHHHHHHHHHH
Q 009321 323 LQLDSASDAVFYIYQTLQDCEVALSPFQ-EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 323 ~~l~~~~~~l~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
+.+..+.+.+.++++++..+........ ........+++++..+.++.+.|.++|+++|+++.|++. |++|++.+|++
T Consensus 681 ~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k~ 759 (880)
T 4arc_A 681 SGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAKA 759 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHhh
Confidence 9999999999999998876544311100 001112346889999999999999999558999999999 99999998875
Q ss_pred HhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 402 LNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
... ... ....+..+|+.++.+|. |+|. .++++|+.++
T Consensus 760 ~~~---------~~~---~~~~l~~~l~~ll~LLaPf~Ph-iaEElW~~Lg 797 (880)
T 4arc_A 760 PTD---------GEQ---DRALMQEALLAVVRMLNPFTPH-ICFTLWQELK 797 (880)
T ss_dssp CCS---------SHH---HHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTT
T ss_pred hcc---------chH---HHHHHHHHHHHHHHHHhhccHH-HHHHHHHHcC
Confidence 311 001 12234566777778886 7777 6888888774
No 22
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.7e-43 Score=404.62 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=168.6
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHHHHHHHcCchhhHHHHhh-c
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 312 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~ 312 (537)
.++|+|++|+||+||||.++++++.++.+. ++++.|+|||||+.+|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 378999999999999999999999987764 56688899999999999999999999999999999999999999985 5
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHHHH
Q 009321 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (537)
Q Consensus 313 ~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~ 392 (537)
+++++++|+++.+.++.+.+.+++++++++.... ..........|+++++.+..+...+.++| ++|+++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~--~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE--VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 9999999999999999999999999887664321 00011122346889999999999999999 99999999986257
Q ss_pred HHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009321 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 393 ~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+++.+|+|++..+.. . +......+..+|+.++.+|. |+|. .++++|+.++
T Consensus 759 ~l~~~~n~Yi~~~k~~----~---~~~~~~~l~~~l~~l~~LLaP~~P~-~aEeiw~~L~ 810 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGR----D---DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKLG 810 (967)
T ss_dssp HHHHHHHHHHHHTTTC----C---CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHSS
T ss_pred HHHHHHHHHHHhccch----h---HHHHHHHHHHHHHHHHHHhccccch-HHHHHHHhcC
Confidence 8999999999876521 0 11223455667777777775 8887 7899999875
No 23
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=8.3e-42 Score=388.36 Aligned_cols=428 Identities=15% Similarity=0.110 Sum_probs=285.9
Q ss_pred CcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.++|++ .|+|+|.+||||+|+++++|+++||+|++||+|.|++|+|++|.+|+.+|.+.|.++.+++++|++.|.+
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45566665 3788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCC-CCc--cchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC-------------CCC-CCCC-------
Q 009321 116 DMADLQCLPP-TYQ--PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPN-YGRL------- 171 (537)
Q Consensus 116 ~l~~L~i~~~-~~~--~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-------------~~~-yg~l------- 171 (537)
+|++|||..+ +.+ +...+|.+.++++|.+|.++|++|++.+.||||+.+ |+. ||..
T Consensus 111 ~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~ 190 (878)
T 2v0c_A 111 SLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELE 190 (878)
T ss_dssp HHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEE
T ss_pred HHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecc
Confidence 9999999853 133 333489999999999999999999999999999885 334 5421
Q ss_pred ------cc---h---hchhh-------------------------hcC--C-------Cc--------------------
Q 009321 172 ------SG---Q---RLENN-------------------------RAG--E-------RV-------------------- 185 (537)
Q Consensus 172 ------s~---~---~l~~~-------------------------~~g--~-------~~-------------------- 185 (537)
+. . .++.+ ..| . |.
T Consensus 191 ~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~ 270 (878)
T 2v0c_A 191 QWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLE 270 (878)
T ss_dssp EEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHH
T ss_pred eeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeeh
Confidence 00 0 00000 000 0 00
Q ss_pred ----------------------------------------------------------ccc--------ccccCcccccc
Q 009321 186 ----------------------------------------------------------AVD--------SRKRNPADFAL 199 (537)
Q Consensus 186 ----------------------------------------------------------~~~--------~~k~~~~df~l 199 (537)
..+ ..-+++.||.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~ 350 (878)
T 2v0c_A 271 LAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350 (878)
T ss_dssp HSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHH
T ss_pred hccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHH
Confidence 000 00011123322
Q ss_pred cccc--------c----------------CC-----------------------------------------CCccccCC
Q 009321 200 WKAA--------K----------------AG-----------------------------------------EPSWDSPW 214 (537)
Q Consensus 200 wk~~--------~----------------~g-----------------------------------------~~~w~~~w 214 (537)
+++. . .| .+++..-|
T Consensus 351 ~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~W 430 (878)
T 2v0c_A 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYW 430 (878)
T ss_dssp HHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSS
T ss_pred HHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhccccc
Confidence 2110 0 00 02334569
Q ss_pred CCCCCchhhh-HH------------------H--H--------------------------------------HHhh---
Q 009321 215 GPGRPGWHIE-CS------------------A--M--------------------------------------SAHY--- 232 (537)
Q Consensus 215 G~g~PgW~ie-cs------------------~--~--------------------------------------~~~~--- 232 (537)
|.++|-||.+ |. . . |+.|
T Consensus 431 G~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~ 510 (878)
T 2v0c_A 431 GTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLR 510 (878)
T ss_dssp SEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHH
T ss_pred CCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhh
Confidence 9999988742 21 0 0 0000
Q ss_pred cC-----------------CCeeEEEecccCcCcchhH---HHHHHhh---ccC-CCCceEEEEeeeeee----------
Q 009321 233 LS-----------------SKFDIHGGGIDLIFPHHEN---EIAQSCA---ACQ-DSNVSYWMHNGHVTN---------- 278 (537)
Q Consensus 233 ~g-----------------~~~dih~~G~Dl~fpH~~~---~~a~~~a---~~~-~~~~~~~~h~g~v~~---------- 278 (537)
++ .|+|++.+|+||..-|..+ +...+.. +.+ .|+.++ +.||||+.
T Consensus 511 ~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l-~~~G~vl~~~~~~~~~~~ 589 (878)
T 2v0c_A 511 YTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL-FTQGMVLAWTDFGPVEVE 589 (878)
T ss_dssp TTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBE-ECCCCEEEEEEEEEEEEE
T ss_pred ccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhh-eecceEeccceecccccc
Confidence 00 3799999999976555432 2222222 123 477777 66799975
Q ss_pred -------------------------------------CC-------ccccccCCCcccHHHHHHHcCchhhHHHHhh-cC
Q 009321 279 -------------------------------------NN-------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AH 313 (537)
Q Consensus 279 -------------------------------------~G-------~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~ 313 (537)
+| +|||||+||+|+|.|++++||+|++|||+++ ++
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~ 669 (878)
T 2v0c_A 590 GSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAP 669 (878)
T ss_dssp TTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSC
T ss_pred ccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCC
Confidence 89 8999999999999999999999999999999 69
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc--cCCCCCCCChHHHHHHHHHHHHHHHHHHcccCchhhhHHH
Q 009321 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS-PFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~-~~~--~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~ 390 (537)
++++++||++.+..+.+.+.++++.+......+. ... ........|+++++.+.++...+.++| ++|+++.|++.
T Consensus 670 ~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~- 747 (878)
T 2v0c_A 670 PENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA- 747 (878)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-
Confidence 9999999999999999999999887765433210 000 001113356899999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHHHHHh--------hhccc
Q 009321 391 FQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKDKALK--------RAELT 461 (537)
Q Consensus 391 L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~~~~~--------~~~~~ 461 (537)
|++|+..+|+|.+... . . ..+...|+.++.+|. |+|. .++++|+.+++..+. ...+.
T Consensus 748 l~~f~~~l~k~~~~~~-----~----~----~~l~~~l~~l~~LLaPf~P~-~aEElw~~Lg~~sv~~~~wP~~d~~~l~ 813 (878)
T 2v0c_A 748 LMEFLNALYEYRKDRP-----V----T----PVYRTAIRYYLQMLFPFAPH-LAEELWHWFWPDSLFEAGWPELDEKALE 813 (878)
T ss_dssp HHHHHHHHHHHHHHCC-----S----C----HHHHHHHHHHHHHHTTTSHH-HHHHHHHHHCSSCGGGSCCCCCCGGGGC
T ss_pred HHHHHHHHhhhcccch-----h----H----HHHHHHHHHHHHHHcccchH-HHHHHHHHcCCCceeecCCCCCCHHHHH
Confidence 9999999999865311 0 0 234556677777775 8887 789999988511110 01123
Q ss_pred HHHHHHHHHHHHHHhcCCChh
Q 009321 462 EEDVLQLIEERAAARKNKDFS 482 (537)
Q Consensus 462 ~~~i~~li~~R~~aR~~Kdf~ 482 (537)
.+.++.+++.|...|..-+..
T Consensus 814 ~~~~~~~vqvngkvR~~i~v~ 834 (878)
T 2v0c_A 814 KDVVEVAVQVNGAVAGTIHIP 834 (878)
T ss_dssp ---------------------
T ss_pred HHHHHHHHhhHHHHHHHcccC
Confidence 456777788887777665543
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2.8e-39 Score=342.40 Aligned_cols=356 Identities=16% Similarity=0.152 Sum_probs=262.0
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHH-------HHHHHH--cCCC-----
Q 009321 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI-------IRRAND--LGEN----- 101 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki-------~~~a~~--~g~~----- 101 (537)
.+++|.+-.++|+|+|++||||+|+++++|+++|++++.||+|.-.+.+.|+|..| ..+..+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 45789999999999999999999999999999999999999999999999999876 223232 1211
Q ss_pred --------------------------------hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCC
Q 009321 102 --------------------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 149 (537)
Q Consensus 102 --------------------------------~~~~~~~~~~~~~~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG 149 (537)
++...+...+.|.+++++|||. +|.+...|...+.+.++++.|.++|
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~-fD~~~~Ess~~~~~~~vv~~L~~~g 186 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIK-IDSYVSERSYYDALNATLESLKEHK 186 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC-CSCEEEGGGGSTTHHHHHHHHHHTT
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ceeecCHHHHHHHHHHHHHHHHHCC
Confidence 1122334456789999999999 4666555432238899999999999
Q ss_pred ceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccccccccCCCCccccCCCCCCCchhhh-HHHH
Q 009321 150 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE-CSAM 228 (537)
Q Consensus 150 ~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~ie-cs~~ 228 (537)
++|+++|..|++... +|. +.|.++-|+ .|.|.|... .++.
T Consensus 187 ~~~e~dGa~~~~~~~---~g~-----------------------~~~~vl~ks-------------DG~~~Y~t~DiA~~ 227 (464)
T 3fnr_A 187 GIYEQEGKIWLASSQ---KGD-----------------------EKDRVIIRE-------------DGRGTYLAADIVYH 227 (464)
T ss_dssp CEEEETTEEEECGGG---GTC-----------------------SSCEEEECT-------------TSCBCHHHHHHHHH
T ss_pred CEEEeCCeEEEEecc---cCC-----------------------CCceEEEeC-------------CCceehhhHHHHHH
Confidence 999999999987642 221 113333332 344555421 1222
Q ss_pred HHhh-cCCCeeEEEecccCcCcchhHHHH---HHhhccCCCCce-EEEEeeeeee--CCc--cccccCCCcccHHHHHHH
Q 009321 229 SAHY-LSSKFDIHGGGIDLIFPHHENEIA---QSCAACQDSNVS-YWMHNGHVTN--NNE--KMSKSLGNFFTIRQITER 299 (537)
Q Consensus 229 ~~~~-~g~~~dih~~G~Dl~fpH~~~~~a---~~~a~~~~~~~~-~~~h~g~v~~--~G~--KMSKS~Gn~i~~~dll~~ 299 (537)
..++ .|....|++.|.| ||.+... ...+++. ++.+ ..+++|||++ +|+ |||||+||+|+|.|++++
T Consensus 228 ~~r~~~~~d~~Iyv~G~d----q~~~f~~l~~~l~~lG~-~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~ 302 (464)
T 3fnr_A 228 KDKMSRGYGKCINIWGAD----HHGYIPRMKAAMEFLGF-DSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE 302 (464)
T ss_dssp HHHHTSSCSEEEEEEEGG----GGGGHHHHHHHHHTTTC-CGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHH
T ss_pred HHHHHcCCCeEEEEecCc----HHHHHHHHHHHHHHcCC-CccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhh
Confidence 2222 2345568889999 5533332 2233343 3344 3467899976 886 999999999999999999
Q ss_pred cCchhhHHHHhhcCcCCCcccCHHHHHHHH--HHHHHHHHHHHHHHHhcCccccCCC---------CCCCChHHHHHHHH
Q 009321 300 YHPLALRHFLISAHYRSPLNYSVLQLDSAS--DAVFYIYQTLQDCEVALSPFQEHGK---------TARINPAAEDCINK 368 (537)
Q Consensus 300 ~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~--~~l~~l~~~~~~~~~~l~~~~~~~~---------~~~~~~~l~~~l~~ 368 (537)
+|+|++|||+++.+++++++|+++.+.+.. |...+++|+++|+++++++....+. ..+.+.+++..+.+
T Consensus 303 ~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~ 382 (464)
T 3fnr_A 303 IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALN 382 (464)
T ss_dssp HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHH
Confidence 999999999999999999999999997654 3456899999999998876532110 01126788899999
Q ss_pred HHHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHhhhcccCch-hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009321 369 LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 369 ~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
+++.+.+++ ++++++.++.. |++|++.+|+||+.+++.... +...+|+.++.++ +|.+++.+|||.++
T Consensus 383 ~~~~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 383 LKAVLNDAF-EARALQKIPDY-LKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 999999999 89986666655 999999999999999887542 3356788888887 99999999999875
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4e-35 Score=311.75 Aligned_cols=247 Identities=20% Similarity=0.194 Sum_probs=183.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|||||++||||+|++++.+.++| +|++.|+.+|||.|++ |+ ...|.+.|.++|++||+.+
T Consensus 102 aPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---R~----------~~e~~~~I~edL~wLGl~w- 162 (553)
T 3aii_A 102 APNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---RV----------DPEAYDMIPADLEWLGVEW- 162 (553)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---GC----------CTTHHHHHHHHHHHHTCCC-
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---cc----------cHHHHHHHHHHHHHcCCCC-
Confidence 699999999999999987555554 7899999999999975 11 3469999999999999995
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC----CCC------CCCCcchh-c---hhhhcCCC------c
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPN------YGRLSGQR-L---ENNRAGER------V 185 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~----~~~------yg~ls~~~-l---~~~~~g~~------~ 185 (537)
|..+++|+|++.+.+++++|+++|+|| +|||... ... |..++... + +++..|.. +
T Consensus 163 d~~~~qSdr~~~y~~~~~~Li~~G~AY-----~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~ 237 (553)
T 3aii_A 163 DETVIQSDRMETYYEYTEKLIERGGAY-----VCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRV 237 (553)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEE-----EECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEE
T ss_pred CCCcccccCHHHHHHHHHHHHHcCCce-----eCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEE
Confidence 788999999999999999999999999 5777653 122 32333321 1 13455532 2
Q ss_pred ccc--ccccCcccccccccccCCCCccccCCCC---CCCchhhhHHHHHHhhcCCCeeEEEecccCcCc---chhHHHHH
Q 009321 186 AVD--SRKRNPADFALWKAAKAGEPSWDSPWGP---GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP---HHENEIAQ 257 (537)
Q Consensus 186 ~~~--~~k~~~~df~lwk~~~~g~~~w~~~wG~---g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fp---H~~~~~a~ 257 (537)
..+ ..+.++.||++|+....+++. ||. ++|+||++|+. |.|.+|++|+++ |+.++++|
T Consensus 238 k~d~~~~n~~~~Dfvl~R~~~~~hp~----~Gd~~~g~PtYhfa~~v----------DD~~~GIThviRG~D~~~nt~~Q 303 (553)
T 3aii_A 238 KTDLNHPNPAIRDWVSMRIVEAEHPR----TGTRYRVYPMMNFSVAV----------DDHLLGVTHVLRGKDHLANREKQ 303 (553)
T ss_dssp CCCTTCSSGGGTTCEEEEECCSCBTT----TBTSCCEEECHHHHHHH----------HHHHTTCCEEEC-----CHHHHH
T ss_pred EcccccCCCCCCCcEEEEecCCCCCc----cCCCceeeeeeeeeeee----------eeccCCCceEeccHhhhhCHHHH
Confidence 222 223467899999987666665 666 69999999953 444445555555 99999999
Q ss_pred H--hhccCCCCceEEEEeeeeeeCCccccccCCC---------------cccHHHHHHH-cCchhhHHHHhhcCc-CCCc
Q 009321 258 S--CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAHY-RSPL 318 (537)
Q Consensus 258 ~--~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~lR~~ll~~~~-~~~~ 318 (537)
. ..+.+.+++++| |+++|+++|+|||||+|| +.|++++.+. |.|++||.|+++.+| +++.
T Consensus 304 ~~l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~ 382 (553)
T 3aii_A 304 EYLYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADS 382 (553)
T ss_dssp HHHHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCB
T ss_pred HHHHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccc
Confidence 8 333455677785 999999999999999998 7889999975 999999999999888 6899
Q ss_pred ccCHHHHHHHHHH
Q 009321 319 NYSVLQLDSASDA 331 (537)
Q Consensus 319 ~fs~~~l~~~~~~ 331 (537)
+||++.|.++.+.
T Consensus 383 ~~s~~~L~~~~r~ 395 (553)
T 3aii_A 383 TMSWKKIYGLNRS 395 (553)
T ss_dssp CCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 9999999988764
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=3.4e-34 Score=304.62 Aligned_cols=251 Identities=18% Similarity=0.139 Sum_probs=201.2
Q ss_pred eCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009321 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 45 ~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~ 124 (537)
.+|+|||++||||||++++.+.++| +|.+.|+.+|||.|+. .....|.+.|+++|++||+.+
T Consensus 31 FaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~wLGl~w 92 (553)
T 1qtq_A 31 FPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEWLGFHW 92 (553)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHHcCCCC
Confidence 4899999999999999988666666 6888999999999862 235679999999999999998
Q ss_pred CCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------CCCCCCCc---chhc-------hhhhcCC---
Q 009321 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPNYGRLS---GQRL-------ENNRAGE--- 183 (537)
Q Consensus 125 ~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------~~~yg~ls---~~~l-------~~~~~g~--- 183 (537)
++..+++|+|++.+.+++++|+++|+|| +|||... +..+|..+ ...+ +++..|.
T Consensus 93 de~~~~qSer~~~~~~~a~~Li~~G~AY-----~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~ 167 (553)
T 1qtq_A 93 SGNVRYSSDYFDQLHAYAIELINKGLAY-----VDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE 167 (553)
T ss_dssp SSSCEEGGGGHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred CCCCeehcccHHHHHHHHHHHHHCCCce-----ecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccC
Confidence 7889999999999999999999999999 5776542 11233322 1111 2455564
Q ss_pred -----C--ccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcC---cchhH
Q 009321 184 -----R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---PHHEN 253 (537)
Q Consensus 184 -----~--~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~f---pH~~~ 253 (537)
| ++....+.++.||++||..+.+++.|.++| .|+|+||++|+ +|.|.+|++|++ +|+.|
T Consensus 168 g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHviRg~e~~~n 236 (553)
T 1qtq_A 168 GKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSLCTLEFQDN 236 (553)
T ss_dssp TSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEEEEGGGTTT
T ss_pred CceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEeeccchhhh
Confidence 2 223344567789999998888888899999 68999999874 678888888888 89999
Q ss_pred HHHHH---hhccCCCCceEEEEeeeeeeCCccccccCCC---------------cccHHHHHHH-cCchhhHHHHhhcCc
Q 009321 254 EIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAHY 314 (537)
Q Consensus 254 ~~a~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~lR~~ll~~~~ 314 (537)
.++|. .|++...++++| |+++|.++|+|||||+|| ++|++++.+. |.|++||.|+++.+|
T Consensus 237 ~~~q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~ 315 (553)
T 1qtq_A 237 RRLYDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 315 (553)
T ss_dssp HHHHHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCC
Confidence 99998 566433367786 789999999999999987 7899999975 999999999999988
Q ss_pred CCCcc-cCHHHHHHHHH
Q 009321 315 RSPLN-YSVLQLDSASD 330 (537)
Q Consensus 315 ~~~~~-fs~~~l~~~~~ 330 (537)
....+ +++..+.+..+
T Consensus 316 s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 316 TKQDNTIEMASLESCIR 332 (553)
T ss_dssp CSSCCCBCHHHHHHHHH
T ss_pred CCCccccchhhHHHHHH
Confidence 86555 68888877554
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=1.8e-33 Score=310.86 Aligned_cols=259 Identities=17% Similarity=0.114 Sum_probs=200.5
Q ss_pred CCcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009321 37 RGKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (537)
Q Consensus 37 ~~~v~~y~~--gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~ 114 (537)
+|+++.++| +|+|||++||||+|++++.+.++| +|.+.|+.+|||.|++ | ....|.+.|+
T Consensus 61 ~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~e~~~~Il 122 (851)
T 2hz7_A 61 AGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---L----------ARQEYVDSIA 122 (851)
T ss_dssp TTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---T----------CCHHHHHHHH
T ss_pred cCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---c----------ccHHHHHHHH
Confidence 466666777 999999999999999987655555 6889999999999874 1 1557999999
Q ss_pred HHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------CCCCCC------Ccchh-c---
Q 009321 115 VDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPNYGR------LSGQR-L--- 176 (537)
Q Consensus 115 ~~l~~L~i~~~~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------~~~yg~------ls~~~-l--- 176 (537)
++|++||+.+++..+++|+|++.+.+++++|+++|+|| +|||... +..+|. ++... +
T Consensus 123 edL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY-----~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~f 197 (851)
T 2hz7_A 123 DDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAY-----VESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLL 197 (851)
T ss_dssp HHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEE-----EECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHH
T ss_pred HHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcE-----eecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHH
Confidence 99999999988889999999999999999999999999 5777652 222333 33211 1
Q ss_pred hhhhcCC--------C--ccccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccC
Q 009321 177 ENNRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246 (537)
Q Consensus 177 ~~~~~g~--------~--~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl 246 (537)
+++..|. | ++....+.++.||++|+..+.+++.|.++| .++|+||++|+. |.|.+|++|
T Consensus 198 e~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~vV----------DD~~~GITH 266 (851)
T 2hz7_A 198 RRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHPL----------QDAIEGVTH 266 (851)
T ss_dssp HHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHHH----------HHHHHTCSE
T ss_pred HHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeEe----------eeccCCcce
Confidence 3455565 2 233344567789999999888889999999 789999999974 334444444
Q ss_pred cCc---chhHHHHHH---hhccCCCCceEEEEeeeeeeCCccccccCCC---------------cccHHHHHHH-cCchh
Q 009321 247 IFP---HHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLA 304 (537)
Q Consensus 247 ~fp---H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~ 304 (537)
++. |+.|.++|. .+++....+++| |+++|.++|.|||||+|| ++|+.++.+. |.|++
T Consensus 267 ViRG~D~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeA 345 (851)
T 2hz7_A 267 SMCSLEFVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEA 345 (851)
T ss_dssp EEEEGGGTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHH
T ss_pred eecchhhhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHH
Confidence 444 889999987 666433226776 789999999999999987 6789999965 99999
Q ss_pred hHHHHhhcCcCCCc-ccCHHHHHHHHH
Q 009321 305 LRHFLISAHYRSPL-NYSVLQLDSASD 330 (537)
Q Consensus 305 lR~~ll~~~~~~~~-~fs~~~l~~~~~ 330 (537)
||.|+++.+|...- .+++..+....+
T Consensus 346 Ir~fl~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 346 VRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp HHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 99999999887544 478887775443
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.96 E-value=9.9e-30 Score=270.54 Aligned_cols=238 Identities=18% Similarity=0.212 Sum_probs=178.2
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|||++||||+|++++ +||.++++.+.|+.+|+|.|+. .. ...|.+.+.++|++|||.++
T Consensus 7 APSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~~---------R~----~~~~~~~i~~dL~wLGl~wd 68 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDRE---------RS----RPEYTENILEGLQWLGLTWD 68 (492)
T ss_dssp CCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSSS---------SC----CHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCcc---------cc----chHHHHHHHHHHHHcCCCCC
Confidence 699999999999999977 4555556889999999999851 11 25699999999999999976
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCC-----------------CCCC-CCCCcchhc-hhhhcCC---
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-----------------KSPN-YGRLSGQRL-ENNRAGE--- 183 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~-----------------~~~~-yg~ls~~~l-~~~~~g~--- 183 (537)
+..+++|++++.+++++++|+++|+|| .|||+. .++. |+.++.... +.+.+|.
T Consensus 69 e~~~~QS~r~~~y~~~~~~Li~~G~AY-----~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~ 143 (492)
T 2cfo_A 69 EGPYFQSDRLDLYRQAIQTLLDKGLAY-----YCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPV 143 (492)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCE
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCce-----EecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCce
Confidence 568899999999999999999999999 578765 2333 556665422 2233454
Q ss_pred -Ccccc----------------ccccCc-ccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEeccc
Q 009321 184 -RVAVD----------------SRKRNP-ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (537)
Q Consensus 184 -~~~~~----------------~~k~~~-~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~D 245 (537)
|+..+ ..+.+. .||++||..+ +| |.|+|+||++|+ +|.|.+|++
T Consensus 144 iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v----------vDD~~~gIt 205 (492)
T 2cfo_A 144 IRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV----------VDDIAMGIT 205 (492)
T ss_dssp EEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------HHHHHTTCS
T ss_pred EEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------hhhhcCCCC
Confidence 21111 123456 7999999753 45 689999999996 445555555
Q ss_pred CcCc---chhHHHHHHh---hccCCCCceEEEEeeee-eeCCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcCC-
Q 009321 246 LIFP---HHENEIAQSC---AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS- 316 (537)
Q Consensus 246 l~fp---H~~~~~a~~~---a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~- 316 (537)
+++. |+.|.+.|.. ++ +.+++ .|.|.+++ ..+|+|||||.||+ ++.++.+ +|.|++||.|++...+..
T Consensus 206 hviRG~D~~~~t~~q~~l~~al-g~~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~ 282 (492)
T 2cfo_A 206 DVIRGEDHIGNTPKQILLYEAL-GATPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPP 282 (492)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHT-TCCCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCC
T ss_pred eEEEchhhhhCHHHHHHHHHHc-CCCCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 5555 9999998874 44 44445 56999995 55999999999996 8999987 599999999999865543
Q ss_pred ---CcccCHHHHHH
Q 009321 317 ---PLNYSVLQLDS 327 (537)
Q Consensus 317 ---~~~fs~~~l~~ 327 (537)
.--||.+.+.+
T Consensus 283 ~~~~e~~~~~e~i~ 296 (492)
T 2cfo_A 283 EGVGELFTLDLAAK 296 (492)
T ss_dssp TTTCSCCCHHHHHH
T ss_pred CccccccCHHHHHh
Confidence 23477776654
No 29
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.95 E-value=6.7e-28 Score=241.25 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=146.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|||++||||+|+++ .+|+.++++.+.|+.+|+|.|++ |+ ...|.+.+.++|++|||.++
T Consensus 11 APsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~---R~----------~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 11 APSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP---RE----------VPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG---GS----------CTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch---hh----------HHHHHHHHHHHHHHcCCCCC
Confidence 59999999999999996 66666677899999999999875 11 14599999999999999976
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeee---------ccceeecCCCC-CCCCCCcc---------hhchhhhcCCCcc
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVV---------EGDVFFAVEKS-PNYGRLSG---------QRLENNRAGERVA 186 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~---------~~~v~f~~~~~-~~yg~ls~---------~~l~~~~~g~~~~ 186 (537)
...+++|++.+.+++++++|+++|+||.. .+.+|+++... +.+|+.+. ...+++..|. +.
T Consensus 73 ~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~-~~ 151 (298)
T 1nzj_A 73 GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGI-IH 151 (298)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEE-EE
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcc-cc
Confidence 66889999999999999999999999963 24466654332 44554331 1122222232 11
Q ss_pred ccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHh--hccCC
Q 009321 187 VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC--AACQD 264 (537)
Q Consensus 187 ~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~--a~~~~ 264 (537)
.+ .+.+..||++||+ .|+|+||++|+. .....|.+.+|+ |.| |+.|.+.|.. .+.+.
T Consensus 152 ~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D----~l~~t~~q~~l~~alG~ 210 (298)
T 1nzj_A 152 AD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GAD----LIEPTVRQISLYQLFGW 210 (298)
T ss_dssp CC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGG----GHHHHHHHHHHHHHHTC
T ss_pred cC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccc----ccccHHHHHHHHHHcCC
Confidence 11 1235679999986 579999999988 677889999999 779 8899999986 33455
Q ss_pred CCceEEEEeeee-eeCCccccccCCCcccHHH
Q 009321 265 SNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQ 295 (537)
Q Consensus 265 ~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d 295 (537)
++++| +|.+++ ..+|+|||||.||+ ++++
T Consensus 211 ~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~ 240 (298)
T 1nzj_A 211 KVPDY-IHLPLALNPQGAKLSKQNHAP-ALPK 240 (298)
T ss_dssp CCCEE-EEECBCCC--------------CCCS
T ss_pred CCCeE-EEeeeeECCCCCcccccCCcc-Chhc
Confidence 66777 899998 56999999999996 5544
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.86 E-value=1.2e-20 Score=200.65 Aligned_cols=230 Identities=20% Similarity=0.268 Sum_probs=156.3
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
..|.+.-++|+|+|++||||+|++++.|+++|. ..| .|+..|+|.|. ......+.+.+.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G---~~iLRieDtD~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKG---KFILRIEDTDL-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCSSC-------------CSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCC---eEEEEEecCCc-------------cccHHHHHHHHHHHH
Confidence 356677788999999999999999999999998 455 57777888873 222345788889999
Q ss_pred HHcCCCCCCC---------ccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC--------------CCCC-----
Q 009321 118 ADLQCLPPTY---------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNYG----- 169 (537)
Q Consensus 118 ~~L~i~~~~~---------~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~--------------~~yg----- 169 (537)
++||+.+ |. ..++|++.+.+++++++|+++|.+| .+||.... |.|.
T Consensus 73 ~wlGl~~-de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY-----~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~ 146 (481)
T 2o5r_A 73 RWLGLLW-DEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAY-----YVYAYPEEIEEMREKLLSEGKAPHYSQEMFE 146 (481)
T ss_dssp HHHTCCC-SBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEE-----EECCCSTTTHHHHHHHHHTTCCCCBCGGGGT
T ss_pred HHcCCCC-CCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCee-----EecCCHHHHHHHHHHHHhcCCCCCCCCchhh
Confidence 9999985 43 2578999999999999999999999 55665521 1221
Q ss_pred -CCcchhc-hhhhcCCC--ccccc-----------------cccCcccccccccccCCCCccccCCCCCCCchhhhHHHH
Q 009321 170 -RLSGQRL-ENNRAGER--VAVDS-----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAM 228 (537)
Q Consensus 170 -~ls~~~l-~~~~~g~~--~~~~~-----------------~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~ 228 (537)
.++.... ..+..|.. +.+.. ...+..||++||+ .|.|+||++|. +
T Consensus 147 r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------DG~ptY~~a~v-v 212 (481)
T 2o5r_A 147 KFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------------NGLPTYNFACV-V 212 (481)
T ss_dssp TTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT-------------TSCBCHHHHHH-H
T ss_pred hcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEcc-------------CCCcchhhHHH-H
Confidence 1221100 01122321 00000 0012235555554 58999999886 3
Q ss_pred HHhhcCCCeeEEEecccCcCcchhHHHHHH---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHH-HcCch
Q 009321 229 SAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPL 303 (537)
Q Consensus 229 ~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d 303 (537)
.....|.+.. +.|.| |+.+.+.|. .+++.. ++. |.|..+++ .+|+|||||.|++ +++++++ .|.|+
T Consensus 213 DD~~~githv--irG~D----~~~~t~~q~~l~~aLG~~-~p~-~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~pe 283 (481)
T 2o5r_A 213 DDMLMEITHV--IRGDD----HLSNTLRQLALYEAFEKA-PPV-FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPE 283 (481)
T ss_dssp HHHHTTCSEE--EEEGG----GHHHHHHHHHHHHHTTCC-CCE-EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHH
T ss_pred HHHhCCCCeE--EEChh----HHHhHHHHHHHHHHcCCC-CCe-EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHH
Confidence 4445665544 47789 776766654 555544 344 58988854 4899999999997 9999998 48888
Q ss_pred hhHHHHhhcCc
Q 009321 304 ALRHFLISAHY 314 (537)
Q Consensus 304 ~lR~~ll~~~~ 314 (537)
+++.|+....+
T Consensus 284 al~~~l~~lG~ 294 (481)
T 2o5r_A 284 ALVNYLALLGW 294 (481)
T ss_dssp HHHHHHHTSSB
T ss_pred HHHHHHHHhCC
Confidence 88887776533
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.85 E-value=1.1e-20 Score=199.96 Aligned_cols=235 Identities=16% Similarity=0.183 Sum_probs=166.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++....++| .+...|+..|+|.|.+ .. ...|.+.+.++|++||+.+
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar-----~~~G~filRieDtD~~---------R~----~~~~~~~I~~dl~wlGl~w- 67 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWAR-----RNGGRFIVRIEDTDRA---------RY----VPGAEERILAALKWLGLSY- 67 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH-----HTTCEEEECBCCCCTT---------SC----CTTHHHHHHHHHHHTTCCC-
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEeCcCCCc---------cc----ChHHHHHHHHHHHHcCCCC-
Confidence 599999999999999987777776 3567899999999863 12 3358899999999999995
Q ss_pred CCc---------cchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC-----------CC-CCCCCcchhch-hhhcCC
Q 009321 126 TYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------SP-NYGRLSGQRLE-NNRAGE 183 (537)
Q Consensus 126 ~~~---------~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-----------~~-~yg~ls~~~l~-~~~~g~ 183 (537)
|.. .++|++.+.+.+++++|+++|+|| .+||... ++ .|..++..... .+..|.
T Consensus 68 d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~ 142 (468)
T 1j09_A 68 DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAY-----RAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGE 142 (468)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEE-----EECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeE-----EcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCC
Confidence 443 689999999999999999999999 6666442 11 13334432211 122332
Q ss_pred C--cc--cc----------------ccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEec
Q 009321 184 R--VA--VD----------------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (537)
Q Consensus 184 ~--~~--~~----------------~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G 243 (537)
. +. .. .......||++||. .|.|+||++|.. .....|.+..|+ |
T Consensus 143 ~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------------dg~PtY~~a~vv-DD~~~githvir--G 206 (468)
T 1j09_A 143 PHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYPTYHLANVV-DDHLMGVTDVIR--A 206 (468)
T ss_dssp CCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--E
T ss_pred CceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec-------------CCCeeehhHHHH-HHHHCCCCeEEE--C
Confidence 1 00 00 00112356777665 589999999864 445677666655 6
Q ss_pred ccCcCcchhHHHHHH---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcCCC-
Q 009321 244 IDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRSP- 317 (537)
Q Consensus 244 ~Dl~fpH~~~~~a~~---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~~- 317 (537)
.| |+.+.+.|. .+++.. ++.+ .|..+++ .+|+|||||.|++ ++.++.+ +|.|++||.|++...+..+
T Consensus 207 ~D----~~~~t~~q~~l~~alg~~-~p~~-~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~ 279 (468)
T 1j09_A 207 EE----WLVSTPIHVLLYRAFGWE-APRF-YHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPD 279 (468)
T ss_dssp GG----GGGGHHHHHHHHHHHTCC-CCEE-EEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTT
T ss_pred hh----hhhhHHHHHHHHHHcCCC-CCeE-EEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcc
Confidence 69 777877765 455444 3444 7888764 4899999999997 8999987 5999999999988655432
Q ss_pred --cccCHHHHHH
Q 009321 318 --LNYSVLQLDS 327 (537)
Q Consensus 318 --~~fs~~~l~~ 327 (537)
..|+.+.+.+
T Consensus 280 ~~~~~~~~el~~ 291 (468)
T 1j09_A 280 GREIFTLEEFIQ 291 (468)
T ss_dssp CCSCCCHHHHHH
T ss_pred cccCCCHHHHHh
Confidence 4588776654
No 32
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.83 E-value=1.1e-19 Score=192.02 Aligned_cols=248 Identities=22% Similarity=0.239 Sum_probs=160.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++..++++| ++...|+.+|+|.|++ .....|.+.+.++|++|||.++
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar-----~~~G~filRieDtD~~-------------R~~~~~~~~i~~dl~wlGl~~d 92 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFAR-----KMKGTFVLRIEDTDVE-------------RSSQEAVDAILEGMAWLGLDYD 92 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEeCCCCcc-------------cccHHHHHHHHHHHHHcCCCCC
Confidence 499999999999999988777666 4678999999999862 1235799999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC--------------CCCC----CCcchhchhhhcCCCccc
Q 009321 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNYG----RLSGQRLENNRAGERVAV 187 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~--------------~~yg----~ls~~~l~~~~~g~~~~~ 187 (537)
...+++|+|++.+++++++|+++|+|| .|||.... |.|. .++.........|....+
T Consensus 93 ~~~~~qS~r~~~y~~~~~~Li~~G~aY-----~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~ 167 (490)
T 4g6z_A 93 EGPYYQMQRMDRYREVLAQMQEKGLVY-----PCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVL 167 (490)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEE-----EECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEE
T ss_pred CCCcccccCHHHHHHHHHHHHHCCCEE-----eCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceE
Confidence 455799999999999999999999999 77776531 1121 122100000001111000
Q ss_pred cccccCccc-ccccccccCCCCcc--------ccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHH
Q 009321 188 DSRKRNPAD-FALWKAAKAGEPSW--------DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258 (537)
Q Consensus 188 ~~~k~~~~d-f~lwk~~~~g~~~w--------~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~ 258 (537)
. .| .|.+ -..|...-.|.+.. ..--..|.|.||++|.. -....|.+..|. |.| |..+.+.|.
T Consensus 168 R-~k-~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vV-DD~~mgIThViR--G~D----~l~~tprq~ 238 (490)
T 4g6z_A 168 R-FR-NPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVV-DDLDMGITHVIR--GDD----HVNNTPRQI 238 (490)
T ss_dssp E-EC-CCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHH-HHHHTTCCEEEE--EGG----GGGGHHHHH
T ss_pred E-Ee-cCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHH-HHHhcCCCEEEe--ccc----cccChHHHH
Confidence 0 00 0000 00111000011000 01123578999987653 344567666665 679 888888775
Q ss_pred h---hccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcC--CCcccCHHHHHHH
Q 009321 259 C---AACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR--SPLNYSVLQLDSA 328 (537)
Q Consensus 259 ~---a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~--~~~~fs~~~l~~~ 328 (537)
. |++.. .+.| .|..+++. +|+|||||.|. +++.++.+ +|.|++++-|++.-.+. ..--||.+.+.+.
T Consensus 239 ~l~~aLG~~-~P~f-~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~ 312 (490)
T 4g6z_A 239 NILRALGGE-VPVY-AHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEW 312 (490)
T ss_dssp HHHHHTTCC-CCEE-EEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHH
T ss_pred HHHHHcCCC-CCeE-EEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhh
Confidence 4 44444 4445 88888765 89999999997 78998886 59999999999875433 3344788777654
No 33
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.83 E-value=1.3e-19 Score=192.32 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=162.5
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++....++|- +...|+..|+|.|.+ .....+.+.+.++|++|||.+
T Consensus 31 APsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~w- 91 (488)
T 3afh_A 31 APSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLRWCGLDW- 91 (488)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT-------------TCCHHHHHHHHHHHHHTTCCC-
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc-------------cccHHHHHHHHHHHHHcCCCC-
Confidence 5999999999999999877777664 567899999999753 123458899999999999984
Q ss_pred CCc---------cchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCC------CCCCCCcchhchhhhcCCC--c--c
Q 009321 126 TYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------PNYGRLSGQRLENNRAGER--V--A 186 (537)
Q Consensus 126 ~~~---------~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~------~~yg~ls~~~l~~~~~g~~--~--~ 186 (537)
|.. .++|++.+.+.+++++|+++|+|| .+||.... |.|..-. ..+..|.. + .
T Consensus 92 De~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY-----~c~ct~eel~~~~~~~Y~~~~----~~~~~G~~~~iR~k 162 (488)
T 3afh_A 92 DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYPH----EYKEKGHPVTIKFK 162 (488)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EEEECSSSTTSEEEEESSCCH----HHHHTTCCEEEEEC
T ss_pred CcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHhhcCCCCCchh----hHHhcCCCceEEEE
Confidence 543 589999999999999999999999 67776531 1222110 01111211 0 0
Q ss_pred c---------------cccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcch
Q 009321 187 V---------------DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251 (537)
Q Consensus 187 ~---------------~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~ 251 (537)
. .....+..||+++|+ .|.|.||++|.. .....|.+..|+ |.| |+
T Consensus 163 ~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------DG~PtY~lA~vV-DD~~mgIThViR--G~D----~l 222 (488)
T 3afh_A 163 VLPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVFR--GED----HL 222 (488)
T ss_dssp CCSSEEEEEETTTEEEEEEGGGSCCEEEECT-------------TSCBCHHHHHHH-HHHHTTCSEEEE--EGG----GG
T ss_pred CCCCceeEEeccceeEeecCCCCCCeEEEec-------------CCCeehhhHHHH-HHHhcCCCEEEE--chh----hh
Confidence 0 000112246666665 588999998874 455677776665 669 88
Q ss_pred hHHHHHH---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcCCC--cccCHHH
Q 009321 252 ENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRSP--LNYSVLQ 324 (537)
Q Consensus 252 ~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~~--~~fs~~~ 324 (537)
.+.+.|. .+++.+ ++.+ .|..+++. +|+|||||.|+ +++.++.+ +|.|++|+.|++...+..+ -.||.+.
T Consensus 223 ~~tp~q~~l~~aLG~~-~P~f-~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e 299 (488)
T 3afh_A 223 SNTPKQLMIYEAFGWE-APVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEE 299 (488)
T ss_dssp GGHHHHHHHHHHHTCC-CCEE-EEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHH
T ss_pred hCHHHHHHHHHHcCCC-CCeE-EEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHH
Confidence 8888776 344444 3444 88888754 89999999999 69999987 5999999999988544321 4466665
Q ss_pred HH
Q 009321 325 LD 326 (537)
Q Consensus 325 l~ 326 (537)
+.
T Consensus 300 ~i 301 (488)
T 3afh_A 300 KL 301 (488)
T ss_dssp HG
T ss_pred HH
Confidence 43
No 34
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.82 E-value=1e-19 Score=197.42 Aligned_cols=225 Identities=19% Similarity=0.214 Sum_probs=160.1
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
+|..=.. |+|+|++||||+|++++.+.++|. +...|+..|+|.|.. .....+.+.+.++|+
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~-----~~G~~ilRieDtD~~-------------r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLR 189 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCSS-------------SCCHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCcEEEEecCcChh-------------hccHHHHHHHHHHHH
Confidence 4544454 999999999999999999999985 556799999997631 224468899999999
Q ss_pred HcCCCCCCCc---------cchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC------CCCCCCCcchhchhhhcCC
Q 009321 119 DLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------SPNYGRLSGQRLENNRAGE 183 (537)
Q Consensus 119 ~L~i~~~~~~---------~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~------~~~yg~ls~~~l~~~~~g~ 183 (537)
+|||.+ |.. .++|++.+.+.+++++|+++|++| .|||... .|.|..-. ..+..|.
T Consensus 190 wlGl~~-D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~~~~~Y~~~~----~~~~~g~ 259 (592)
T 3al0_C 190 WCGLDW-DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYPH----EYKEKGH 259 (592)
T ss_dssp HTTCCC-SBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEE-----EEEEETTEEEEECCCCSSCCH----HHHHTTC
T ss_pred HcCCCC-CCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCce-----EecCCHHHHHhhcCCCCCcHH----HHhhcCC
Confidence 999984 543 488999999999999999999999 6666542 12232110 0111121
Q ss_pred C-----------cc--------ccccccCcccccccccccCCCCccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecc
Q 009321 184 R-----------VA--------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (537)
Q Consensus 184 ~-----------~~--------~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~ 244 (537)
. +. +.....+..||++||. .|.|.||++|.. .....|.+..|+ |.
T Consensus 260 ~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dg~ptY~~a~vv-DD~~~githvir--G~ 323 (592)
T 3al0_C 260 PVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVFR--GE 323 (592)
T ss_dssp CEEEEECCCSSCCEECCTTTCSEECCSSSSCCEEEECT-------------TSCCCHHHHHHH-HHHHTTCSBCCE--EG
T ss_pred CceEEEECCCCCceeeecccceeeeccccCCCeEEEcC-------------CCCeehhhHHHH-HHHhcCCCeEEE--ch
Confidence 0 00 0000122356777765 589999998864 445677766665 66
Q ss_pred cCcCcchhHHHHHHh---hccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcC
Q 009321 245 DLIFPHHENEIAQSC---AACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR 315 (537)
Q Consensus 245 Dl~fpH~~~~~a~~~---a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~ 315 (537)
| |+.+.+.|.. +++. +++.| .|..+++ .+|+|||||.|+ +++.++.+ +|.|++||.|++...+.
T Consensus 324 D----~~~~t~~q~~l~~alg~-~~P~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~s 392 (592)
T 3al0_C 324 D----HLSNTPKQLMIYEAFGW-EAPVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWR 392 (592)
T ss_dssp G----GGGGHHHHHHHHTTTTC-CCCBC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTBC
T ss_pred h----hHhCHHHHHHHHHHhCC-CCCeE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 9 8888777763 4443 33445 7877764 489999999999 69999988 59999999999875443
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.72 E-value=1.2e-16 Score=169.75 Aligned_cols=248 Identities=17% Similarity=0.145 Sum_probs=156.7
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|+++....++|-. .-.|+..|+|.|. ......+.+.+.++|++||+.++
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~~-----gG~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wlGl~wD 73 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARHT-----GGTFVFRIEDTDA-------------QRDSEESYLALLDALRWLGLDWD 73 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHHH-----TCEEEECBCCCCT-------------TTCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHHc-----CCEEEEEECcCCC-------------cccChHHHHHHHHHHHHcCCCcC
Confidence 48999999999999999999888843 3489999999864 22234588999999999999964
Q ss_pred C--------CccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC-------------CCCCCC----Ccchhchh-h
Q 009321 126 T--------YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGR----LSGQRLEN-N 179 (537)
Q Consensus 126 ~--------~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~-------------~~~yg~----ls~~~l~~-~ 179 (537)
. ...++|++.+...+++++|+++|+|| .+||... .|.|.. ++...... .
T Consensus 74 egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY-----~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~ 148 (498)
T 2ja2_A 74 EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAY-----HAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL 148 (498)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH
T ss_pred CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeE-----EeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh
Confidence 3 35788999999999999999999999 7777542 122321 22211111 1
Q ss_pred hcCCC--ccccccccCc--ccccccccc-cCCC-CccccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcCcchhH
Q 009321 180 RAGER--VAVDSRKRNP--ADFALWKAA-KAGE-PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (537)
Q Consensus 180 ~~g~~--~~~~~~k~~~--~df~lwk~~-~~g~-~~w~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~ 253 (537)
..|.. +.+....... .|.+..+-. .... ..|..--..|.|.||++|.. .....|.+..| -|.| |+.+
T Consensus 149 ~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vV-DD~~mgithvi--RG~D----~~~~ 221 (498)
T 2ja2_A 149 AEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPC-DDALMKITHVL--RGED----LLPS 221 (498)
T ss_dssp HTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHH-HHHHTTCCEEE--EEGG----GGGG
T ss_pred ccCCCceEEEECCCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHH-HhhhcCCCEEE--EChh----hhhc
Confidence 12322 1110000000 010000000 0000 01222234688999988753 34455655444 6679 7766
Q ss_pred HHHHH---hhc-----cCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCcCC---Cccc
Q 009321 254 EIAQS---CAA-----CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS---PLNY 320 (537)
Q Consensus 254 ~~a~~---~a~-----~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~---~~~f 320 (537)
.+.|. .++ +. +.+.+ .|..+++ .+|+|||||.|+ ++++++.+ +|.|++++.|+....+.. .-.|
T Consensus 222 t~~q~~l~~aL~~~g~g~-~~P~~-~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~ 298 (498)
T 2ja2_A 222 TPRQLALHQALIRIGVAE-RIPKF-AHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLF 298 (498)
T ss_dssp HHHHHHHHHHHHHTTSCC-CCCEE-EEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCC
T ss_pred cHHHHHHHHHHHhhcCCC-CCCeE-EEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccC
Confidence 66443 455 43 34555 7877765 489999999999 68999987 499999999998753321 2345
Q ss_pred CHHHHH
Q 009321 321 SVLQLD 326 (537)
Q Consensus 321 s~~~l~ 326 (537)
|.+.+.
T Consensus 299 s~~eli 304 (498)
T 2ja2_A 299 GLDEMV 304 (498)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 555543
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.67 E-value=1.3e-15 Score=163.52 Aligned_cols=248 Identities=18% Similarity=0.209 Sum_probs=158.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~~ 125 (537)
.|+|+|++||||+|++++...++|- +.-.|+..|+|.|.. .....|.+.+.++|++|||.++
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~-----~~G~fiLRieDtD~~-------------R~~~~~~~~I~~~L~wlGl~wD 91 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS-----CGGKFLLRIEDTDQS-------------RYSPEAENDLYSSLKWLGISFD 91 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCTT-------------SCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCCC-------------cCCHHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999998888874 445899999998742 1223588999999999999853
Q ss_pred CC--------ccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCC--------------CCCC----CCCcchhchhh
Q 009321 126 TY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY----GRLSGQRLENN 179 (537)
Q Consensus 126 ~~--------~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~--------------~~~y----g~ls~~~l~~~ 179 (537)
.. ..++|++.+...+++++|+++|+|| +|||... .|.| -.++.......
T Consensus 92 e~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY-----~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~ 166 (512)
T 4gri_A 92 EGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAY-----YCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENA 166 (512)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHH
T ss_pred cCCccCCCCCCccccchHHHHHHHHHHHHHcCCcc-----ccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhh
Confidence 21 2378999999999999999999999 7787642 1222 22332222111
Q ss_pred -hcCCCccccccccCccc-ccccccccCCCCcc---------ccCCCCCCCchhhhHHHHHHhhcCCCeeEEEecccCcC
Q 009321 180 -RAGERVAVDSRKRNPAD-FALWKAAKAGEPSW---------DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 248 (537)
Q Consensus 180 -~~g~~~~~~~~k~~~~d-f~lwk~~~~g~~~w---------~~~wG~g~PgW~iecs~~~~~~~g~~~dih~~G~Dl~f 248 (537)
..|....+. -+.|.+ -..|...-.|...+ ..--..|.|.||++|.. .....|.+..|. |.|
T Consensus 167 ~~~~~~~~~R--~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vV-DD~~mgITHViR--G~D--- 238 (512)
T 4gri_A 167 LIKKIKPVVR--FKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVV-DDYLMKITHVLR--AQE--- 238 (512)
T ss_dssp HHTTCCCEEE--ECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHH-HHHHTTCSEEEE--EGG---
T ss_pred hhhhccceee--ecccccCCceeeccccceEEecccccCCceEEEecCCccccccccee-cccccCCceecc--ccc---
Confidence 112110000 000000 00010000010000 01123578999998753 334566555555 559
Q ss_pred cchhHHHHHH---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHH-HcCchhhHHHHhhcCc--CC-Cccc
Q 009321 249 PHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY--RS-PLNY 320 (537)
Q Consensus 249 pH~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~--~~-~~~f 320 (537)
|..+.+.|. .+++.+ ++.| .|..+++. +|+|+||+.|. .++.++.+ +|-|+++.-|++.-.+ .. .--|
T Consensus 239 -~l~sTp~q~~l~~alg~~-~P~y-~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eif 314 (512)
T 4gri_A 239 -WVSSGPLHVLLYKAFKWK-PPIY-CHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFF 314 (512)
T ss_dssp -GGGGHHHHHHHHHHHTCC-CCEE-EEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCC
T ss_pred -cccccHHHHHHHHHcCCC-CCeE-EecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhh
Confidence 777776664 444444 4545 88888877 89999999997 68888876 5999999999877433 33 3458
Q ss_pred CHHHHHHH
Q 009321 321 SVLQLDSA 328 (537)
Q Consensus 321 s~~~l~~~ 328 (537)
|.+.|.+.
T Consensus 315 s~~eli~~ 322 (512)
T 4gri_A 315 SKNDLEQF 322 (512)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 98888765
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.73 E-value=1.6e-07 Score=95.11 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=49.6
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++.++|.|+.. |.+...-....++..+ + +.+|+.++. ++|+|||||.||+|++.| +|+++|..+.+.
T Consensus 170 ~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~-p-~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 170 GVDLAVGGIDQRK-IHMLARENLPRLGYSS-P-VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCEEEechhhHH-HHHHHHHHHHhcCCCC-c-eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 6889999999755 4433333333333333 3 237777774 499999999999999987 699999998875
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.40 E-value=1.5e-06 Score=88.20 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=107.0
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
....||.-|+|.+||||...++. -.+.|...|++|.++. .|+-.- +.. ..+|.. ...+..+...++.++
T Consensus 13 ~~v~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~I--aD~ha~-t~~----~~dp~~-~~~~~~~~~~~~lA~ 81 (340)
T 2g36_A 13 MRILSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFYFV--ADWHAL-TTH----YDDVSK-LKEYTRDLVRGFLAC 81 (340)
T ss_dssp CEEEEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEEEE--CHHHHH-HHH----TTCCTT-HHHHHHHHHHHHHHT
T ss_pred CeEEEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEEEE--ecceee-cCC----CCCHHH-HHHHHHHHHHHHHHh
Confidence 35667888999999999776542 3344556899998874 443222 211 245554 445566777888889
Q ss_pred CCCCCC-CccchhhhHHHHHHHHHHHHHCCceeeeccceeecCCCCCCCCCCcchhchhhhcCCCccccccccCcccccc
Q 009321 121 QCLPPT-YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFAL 199 (537)
Q Consensus 121 ~i~~~~-~~~r~s~~~~~~~~~~~~L~~kG~ay~~~~~v~f~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~df~l 199 (537)
|+.+.. .+...|+.. ...++...|- +....|+|.. .. ..|..
T Consensus 82 Gldp~k~~if~qS~~~-~~~el~~~l~-----------------~~~~v~~l~r-----~~--------~~k~~------ 124 (340)
T 2g36_A 82 GIDPEKSVIFVQSGVK-EHAELALLFS-----------------MIVSVSRLER-----VP--------TYKEI------ 124 (340)
T ss_dssp TCCTTTSEEEEGGGCT-HHHHHHHHHH-----------------TTSCHHHHHT-----CH--------HHHTC------
T ss_pred CCChhHeEEEECCchH-HHHHHHHHHH-----------------ccCCHHHHHH-----hH--------HHHhH------
Confidence 997421 233444432 2223222111 1111111111 00 00100
Q ss_pred cccccCCCCccccCCCCCCC-chhhhHHHHHHhhcCCCeeEEEecccCcCcchhHHHHHHhhc---cC---CCCceEEEE
Q 009321 200 WKAAKAGEPSWDSPWGPGRP-GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMH 272 (537)
Q Consensus 200 wk~~~~g~~~w~~~wG~g~P-gW~iecs~~~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~---~~---~~~~~~~~h 272 (537)
+.+. .++.+.+ |-+.--.-|+..++-...++.++|.|+.. |.+...-....+ .+ ..|.-+..|
T Consensus 125 ~~r~---------~~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~ 194 (340)
T 2g36_A 125 KSEL---------NYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSR 194 (340)
T ss_dssp ----------------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECC
T ss_pred HHHh---------ccCCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhcc
Confidence 0000 0001111 11111122333344356899999999754 544322222222 13 223323233
Q ss_pred eeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 273 NGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 273 ~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
+.+|.- +|.|||||.||.|++.| +|+.++=.+.+.
T Consensus 195 ~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 195 VPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp SCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred ccccCCCCccccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 444443 89999999999999987 888888877764
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=8.3e-06 Score=84.54 Aligned_cols=69 Identities=19% Similarity=0.057 Sum_probs=34.7
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeee-eC-CccccccCCCc-ccHHHHHHHcCchhhHHHHhh
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-NEKMSKSLGNF-FTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~-G~KMSKS~Gn~-i~~~dll~~~~~d~lR~~ll~ 311 (537)
..+++.++|.|+.. |.+..+-....++..+ + +.+|+.+|. ++ |+|||||.||. |++.| +|+.++=-+.+
T Consensus 181 ~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~k 252 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK-IFVLAEENLPSLGYKK-R-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKINS 252 (394)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCCC----------CCSCBTTC-----CHHHHHHHHHH
T ss_pred hCCCEEecCccHHH-HHHHHHHHHHHcCCCC-C-EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHHH
Confidence 46889999999543 3333333333343332 3 336666664 38 99999999996 88866 46666665554
No 40
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.07 E-value=6.4e-05 Score=76.16 Aligned_cols=71 Identities=23% Similarity=0.142 Sum_probs=44.5
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhc---cCC--CCceEEEEe---eeee-eCC-ccccccCCCcccHHHHHHHcCchh
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAA---CQD--SNVSYWMHN---GHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 304 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~---~~~--~~~~~~~h~---g~v~-~~G-~KMSKS~Gn~i~~~dll~~~~~d~ 304 (537)
...++.++|.|+.. |.+...-....+ ++. +.+.. +|. .+|. ++| +|||||.||.|++.| +|+.
T Consensus 140 ~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~ 212 (337)
T 2el7_A 140 YKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQA-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEES 212 (337)
T ss_dssp TTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEE-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHH
T ss_pred hCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCee-ecccccccccCCCCccccCCCCCCeeeCcC-----CHHH
Confidence 45799999999764 554322222211 131 22333 343 2433 389 999999999999876 4777
Q ss_pred hHHHHhhc
Q 009321 305 LRHFLISA 312 (537)
Q Consensus 305 lR~~ll~~ 312 (537)
++=.+.+.
T Consensus 213 i~~Ki~~a 220 (337)
T 2el7_A 213 IWQKIQHL 220 (337)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 87777764
No 41
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.00 E-value=2e-05 Score=80.81 Aligned_cols=73 Identities=11% Similarity=-0.023 Sum_probs=43.2
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
...||--|+|.+||||+.+. - ..+.|...|+++++..+ |+-.-+-. ..|.+++++. .+...+..++.++|
T Consensus 37 ~iy~G~~PTg~lHlG~l~~l---~-~~~~lQ~~G~~~~~~ia--D~~a~~~~---ps~~~~e~i~-~~~~~~~~~~la~G 106 (364)
T 2cya_A 37 KGYIGYEPSGVAHIGWLVWM---Y-KVKDLVEAGVDFSVLEA--TWHAYIND---KLGGDMDLIR-AAARIVRRVMEAAG 106 (364)
T ss_dssp EEEEEECCCSSCBTHHHHHH---H-HHHHHHHTTCEEEEEEC--HHHHHHTT---GGGGCHHHHH-HHHHHHHHHHHHTT
T ss_pred EEEeccCCCCCccHhHHHHH---H-HHHHHHHCCCCEEEEEe--CcchhhCC---CCCCCHHHHH-HHHHHHHHHHHHhC
Confidence 44556667799999994333 2 33444556999876654 22111110 1123555444 35567788999999
Q ss_pred CCC
Q 009321 122 CLP 124 (537)
Q Consensus 122 i~~ 124 (537)
+.+
T Consensus 107 ~dp 109 (364)
T 2cya_A 107 VPV 109 (364)
T ss_dssp CCG
T ss_pred CCc
Confidence 974
No 42
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.99 E-value=1.8e-05 Score=79.53 Aligned_cols=81 Identities=10% Similarity=-0.017 Sum_probs=47.7
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
....||--|+|.+||||+.+. - ..+.+...|+++++..+ |.-..+ .. ..++++ .+++...+..++.++
T Consensus 29 ~~vy~G~~PTg~lHlGhl~~l---~-~~~~lQ~~g~~~~~~i~--D~~a~~-~~----~~~~e~-i~~~~~~~~~~~~a~ 96 (314)
T 2zp1_A 29 KSAYIGFEPSGKIHLGHYLQI---K-KMIDLQNAGFDIIILLA--DLAAYL-NQ----KGELDE-IRKIGDYNKKVFEAM 96 (314)
T ss_dssp EEEEEEECCCSSCBHHHHHHH---H-HHHHHHHTTEEEEEEEC--HHHHHH-TT----CCCHHH-HHHHHHHHHHHHHHT
T ss_pred CEEEEccCCCCCcchhhHHHH---H-HHHHHHHCCCCEEEEEe--cceEec-CC----CCCHHH-HHHHHHHHHHHHHhc
Confidence 344566666799999994443 2 34444556988876553 211111 10 124444 445668889999999
Q ss_pred CCCCCCCccchhhhH
Q 009321 121 QCLPPTYQPRVSDHM 135 (537)
Q Consensus 121 ~i~~~~~~~r~s~~~ 135 (537)
|+. ..+...|+..
T Consensus 97 G~d--~~~~~qs~~~ 109 (314)
T 2zp1_A 97 GLK--AKYVYGSEFQ 109 (314)
T ss_dssp TCC--CEEEEGGGTT
T ss_pred CCC--eEEEECChhh
Confidence 986 4555556443
No 43
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.95 E-value=1.3e-05 Score=82.40 Aligned_cols=69 Identities=20% Similarity=0.039 Sum_probs=37.7
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeee-eCCccccccCCC-cccHHHHHHHcCchhhHHHHhh
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~ 311 (537)
...++.++|.|+.. |.+..+-....++..+ + +.+|+.++. ++|+|||||.|| .|++.| +|+.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRK-IFTFAEKYLPALGYSK-R-VHLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHT
T ss_pred hcCCEEEcChhHHH-HHHHHHHHHHHcCCCC-C-EEEecCccCCCCcccccCCCCCCeEeccC-----CHHHHHHHHHH
Confidence 35789999999643 3333233333333232 3 336666664 499999999999 798876 47777777766
No 44
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.86 E-value=8.4e-05 Score=76.37 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=47.6
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
++.....+|--|+|++||||. +.+..+.++.+..|..|.++ ++|.. +... ...+++++.+ +..++..++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~---v~~~~~~~lQ~~~g~~v~i~--I~D~~-a~~~----r~~~~e~i~~-~~~~~~~~~ 148 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEY---ITLEFARYLQDAFNIQVIIQ--ILDDI-KVLN----REATINEASK-MSNDLMKYI 148 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGH---HHHHHHHHHHHHHCCEEEEE--ECHHH-HHHT----TSCCHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEeccCCCCCccHHHH---HHHHHHHHHHHhcCCeEEEE--eCchH-Hhhc----CCCCHHHHHH-HHHHHHHHH
Confidence 333445567888899999994 44444444334458777777 66653 2221 1256666554 555778889
Q ss_pred HHcCCCC
Q 009321 118 ADLQCLP 124 (537)
Q Consensus 118 ~~L~i~~ 124 (537)
-++|+.+
T Consensus 149 lA~GlDp 155 (386)
T 3hzr_A 149 LAFGFNE 155 (386)
T ss_dssp HHTCCCG
T ss_pred HHcCCCC
Confidence 9999973
No 45
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=97.84 E-value=2.8e-05 Score=80.23 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=46.4
Q ss_pred CeeEEEecccCcCcchhHHH--HHHh-hcc---C-----CC----CceEEEEeeeeee-CCccccccCCCcccHHHHHHH
Q 009321 236 KFDIHGGGIDLIFPHHENEI--AQSC-AAC---Q-----DS----NVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~--a~~~-a~~---~-----~~----~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~ 299 (537)
..++.+||.|. .+|.+..+ +... ..+ + .| ...+-+++.+|.- +|+|||||.||.|++.| +.
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 48999999997 34554422 2221 001 0 01 1224466666644 99999999999999877 34
Q ss_pred cCchhhHHHHhhc
Q 009321 300 YHPLALRHFLISA 312 (537)
Q Consensus 300 ~~~d~lR~~ll~~ 312 (537)
-+|+.++=++.+.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 5777777777664
No 46
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.80 E-value=9.3e-06 Score=81.80 Aligned_cols=71 Identities=25% Similarity=0.167 Sum_probs=42.9
Q ss_pred CCeeEEEecccCcCcchhH--HHHHHhhc-cCC--CCceEEE--Eeeeee-eCCccccccCCCcccHHHHHHHcCchhhH
Q 009321 235 SKFDIHGGGIDLIFPHHEN--EIAQSCAA-CQD--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALR 306 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~--~~a~~~a~-~~~--~~~~~~~--h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR 306 (537)
...++.++|.|... |.+. +++..... ++. +.+...+ ++.+|. ++|+|||||.+|.|++.| +|+.++
T Consensus 138 ~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~ 211 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLK 211 (322)
T ss_dssp TTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHH
T ss_pred hCCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHH
Confidence 46799999999754 5443 23332211 121 1122212 123333 389999999999998876 677777
Q ss_pred HHHhh
Q 009321 307 HFLIS 311 (537)
Q Consensus 307 ~~ll~ 311 (537)
=.+.+
T Consensus 212 ~KI~~ 216 (322)
T 3tzl_A 212 KQISS 216 (322)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66665
No 47
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=97.72 E-value=1.9e-05 Score=82.36 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee-CCccccccCCC-cccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGN-FFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|..+ |.+.-.-...-++..+ + +-++..++.- +|+|||||.|| .|++.| +.-+|+.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~-~-~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQWG-NIIAGVRLVRQKLGAT-V-HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTHH-HHHHHHHHHHHHHCCC-C-EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCC-c-cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 5789999999654 4433222222233333 2 3355555543 99999999999 999877 466788887777764
No 48
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=97.71 E-value=0.00062 Score=69.29 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=41.4
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhc---cC---CCCceEEEEeeeee-eCCc-cccccCCCcccHHHHHHHcCchhhHH
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRH 307 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~---~~---~~~~~~~~h~g~v~-~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~ 307 (537)
..++..+|.|+.. |.+...-....+ ++ ..|.-+..|+.+|. ++|. |||||.||.|++.| +|+.++=
T Consensus 162 ~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d-----~p~~i~~ 235 (351)
T 1yi8_B 162 GATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD-----SADEVAR 235 (351)
T ss_dssp TCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC-----CHHHHHH
T ss_pred CCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC-----CHHHHHH
Confidence 5789999999754 444322222211 22 22222212334443 3896 99999999998866 3666666
Q ss_pred HHhh
Q 009321 308 FLIS 311 (537)
Q Consensus 308 ~ll~ 311 (537)
.+.+
T Consensus 236 Ki~~ 239 (351)
T 1yi8_B 236 KVMG 239 (351)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6665
No 49
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.71 E-value=0.0002 Score=73.43 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=40.8
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee--CC-ccccccC-CCcccHHHHHHHcCchhhHHHHhh
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN--NN-EKMSKSL-GNFFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~--~G-~KMSKS~-Gn~i~~~dll~~~~~d~lR~~ll~ 311 (537)
..|+.+||.|..+ |++.-.-...-++.. +..+.+++.+|.- +| +|||||. +|.|++.| +|+.++==+.+
T Consensus 200 ~ad~vpgG~DQ~~-~l~l~Rdla~r~~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p~~i~~KI~k 272 (373)
T 3vgj_A 200 NVDICQLGIDQRK-VNMLAREYCDIKKIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SESDVNRKIKK 272 (373)
T ss_dssp TCSEECCBGGGHH-HHHHHHHHHHHHTCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEcchhhHH-HHHHHHHHHHHhCCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CHHHHHHHHHh
Confidence 5789999999754 443322222223332 2223466666654 78 4999999 57888754 45555544444
No 50
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=97.68 E-value=2.9e-05 Score=80.92 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=47.6
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhc-cCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~-~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|..+ |.+.-.-...-+ +..+ + +-+++.++.- +|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 186 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~-~-~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 259 (420)
T 1jil_A 186 NCKIQVGGSDQWG-NITSGIELMRRMYGQTD-A-YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWINQ 259 (420)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHCCCC-C-EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCC-e-eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 5899999999754 444333223333 3333 2 3355556543 99999999999999877 456777777666653
No 51
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.67 E-value=0.00011 Score=76.87 Aligned_cols=69 Identities=23% Similarity=0.201 Sum_probs=47.8
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee-CCc-cccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNE-KMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|.. +|.+...-....++..+ + +.+++.++.- +|. |||||.||.|++.| +|+.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~-~-~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSP-Q-VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCC-C-EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCC-c-eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 478999999976 35544333333333333 3 3356666543 895 99999999999988 888888777774
No 52
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.00022 Score=73.23 Aligned_cols=71 Identities=21% Similarity=0.140 Sum_probs=44.5
Q ss_pred CCeeEEEecccCcCcchhHHHHHHhhccC-------CCCceEEEEeeeeee-CC------------------ccccccC-
Q 009321 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN-NN------------------EKMSKSL- 287 (537)
Q Consensus 235 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~~-------~~~~~~~~h~g~v~~-~G------------------~KMSKS~- 287 (537)
...|+..+|.|.. +|++...-...-++. ..+..+.+|+.+|.- +| +|||||.
T Consensus 179 ~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~ 257 (375)
T 2cyc_A 179 QGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKP 257 (375)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCG
T ss_pred hCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCC
Confidence 4578999999976 455443333333322 011223366566543 77 8999998
Q ss_pred CCcccHHHHHHHcCchhhHHHHhh
Q 009321 288 GNFFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 288 Gn~i~~~dll~~~~~d~lR~~ll~ 311 (537)
+|.|++.| +|+.++=.+.+
T Consensus 258 ~~~I~L~d-----~p~~i~~KI~~ 276 (375)
T 2cyc_A 258 YSAVFIHD-----SPEEIRQKLRK 276 (375)
T ss_dssp GGSCBTTC-----CHHHHHHHHHH
T ss_pred CCeeccCC-----CHHHHHHHHHH
Confidence 78898876 47777777665
No 53
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=97.49 E-value=5.6e-05 Score=78.60 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=47.0
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhc-cCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~-~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|..+ |.+.-.-...-+ +..+ + +-+++.++.- +|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 185 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~-~-~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 185 GCRLQIGGSDQWG-NITAGLELIRKTKGEAR-A-FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWINT 258 (419)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHC--C-C-EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCC-e-eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 5899999999754 444333222333 3332 2 3355556543 99999999999999977 456777777776663
No 54
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.49 E-value=0.00014 Score=74.94 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=47.5
Q ss_pred CcceEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~yg-~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
|+.....||--|+| .+||||. |.+..++++.+..|..|..+ |+|.- + +.....+++++. ++...+.++
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~---v~~~~~~~lQ~~~~~~v~i~--I~D~~-~----~l~~~~~~e~i~-~~~~~~~~~ 144 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHL---IPFMFTKWLQDSFRVPLVIQ--MTDDE-K----FYFRNIPMEQVE-AMTTENIKD 144 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGS---HHHHHHHHHHHHHTCCEEEE--ECHHH-H----HHHSCCCHHHHH-HHHHHHHHH
T ss_pred CCCeEEEEeecCCCccchHHHH---HHHHHHHHHHHhcCCcEEEE--EcchH-H----HhcCCCCHHHHH-HHHHHHHHH
Confidence 44445566778888 7999996 34444555444457777776 55543 2 222235665554 466678888
Q ss_pred HHHcCCCC
Q 009321 117 MADLQCLP 124 (537)
Q Consensus 117 l~~L~i~~ 124 (537)
+-++|+.+
T Consensus 145 ~lA~GlDp 152 (395)
T 3i05_A 145 IIAMGFDP 152 (395)
T ss_dssp HHTTTCCT
T ss_pred HHHcCCCC
Confidence 88899874
No 55
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.46 E-value=0.00079 Score=69.30 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=45.2
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009321 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 39 ~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
.+.+| +|--|+|.+||||.-.++ +.|+|.. .|++|++..+ |.+. ++. ..+.+++++ ..+...+.+++
T Consensus 73 p~~i~-sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~ha--~~~---~~~~~~e~i-~~~~~~~~~~~ 140 (392)
T 3jxe_A 73 GFFLY-TGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDEK--FLF---KENLTFDDT-KRWAYDNILDI 140 (392)
T ss_dssp CCEEE-EEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHHH--HHH---CSSCCHHHH-HHHHHHHHHHH
T ss_pred CeEEE-eccCCCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chHH--hhc---CCCCCHHHH-HHHHHHHHHHH
Confidence 44444 455566999999966553 3455655 7998887754 2221 111 113455544 44566788888
Q ss_pred HHcCCCC
Q 009321 118 ADLQCLP 124 (537)
Q Consensus 118 ~~L~i~~ 124 (537)
.++|+.+
T Consensus 141 lA~GlDp 147 (392)
T 3jxe_A 141 IAVGFDP 147 (392)
T ss_dssp HTTCCCT
T ss_pred HHhCcCc
Confidence 8899974
No 56
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=97.44 E-value=0.00013 Score=73.56 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=46.2
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
...||--|+|.+||||...++ ..++++ .|+++++..+ |+-.-+- ..+++++ .++...+..++-++
T Consensus 3 ~vysG~~PTG~lHlGn~vg~l-----~~~~~lQ~g~~~~~~Ia--D~ha~~~------~~~~e~i-~~~~~~~~~~~la~ 68 (328)
T 1i6k_A 3 TIFSGIQPSGVITIGNYIGAL-----RQFVELQHEYNCYFCIV--DQHAITV------WQDPHEL-RQNIRRLAALYLAV 68 (328)
T ss_dssp EEEEEECCCSCCBHHHHHHTH-----HHHHHHTTTSEEEEEEC--HHHHTTS------CCCHHHH-HHHHHHHHHHHHHT
T ss_pred EEEEeeCCCCcccHHHHHHHH-----HHHHHHHcCCcEEEEEe--CceeecC------CCCHHHH-HHHHHHHHHHHHHh
Confidence 356677777999999987664 233322 3999865543 2111110 0355443 44566888899999
Q ss_pred CCCCCC-Cccchhhh
Q 009321 121 QCLPPT-YQPRVSDH 134 (537)
Q Consensus 121 ~i~~~~-~~~r~s~~ 134 (537)
|+.+.. .+...|+.
T Consensus 69 Gldp~k~~if~qS~~ 83 (328)
T 1i6k_A 69 GIDPTQATLFIQSEV 83 (328)
T ss_dssp TCCTTTEEEEEGGGC
T ss_pred CCChhhcEEEecCch
Confidence 998421 33444543
No 57
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.43 E-value=0.00081 Score=69.26 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=46.5
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
|+.....||--|+ |.+||||. |.+..++++.+..|..|.+ -|.|.. +.+.+ ...+++++ .++..++.++
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~---v~~~~~~~lQ~~~~~~v~i--~I~D~~-~~~~r---~~~~~e~i-~~~~~~~~~~ 141 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHL---VPFLFTKYLQDTFKVPLVI--QLTDDE-KFIFK---SNLTLEET-HNYAYENMKD 141 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTH---HHHHHHHHHHHHHCCCEEE--EECHHH-HHHHC---TTCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCCccHHHH---HHHHHHHHHHHhcCCCeEe--eccChH-HHhhc---cCCCHHHH-HHHHHHHHHH
Confidence 4333445677788 78999994 4444455555555777666 355553 21111 14566554 4456677888
Q ss_pred HHHcCCCC
Q 009321 117 MADLQCLP 124 (537)
Q Consensus 117 l~~L~i~~ 124 (537)
+.++|+.+
T Consensus 142 ~lA~GlDp 149 (393)
T 3hv0_A 142 IIACGFDP 149 (393)
T ss_dssp HHTTCCCT
T ss_pred HHHcCCCC
Confidence 88899874
No 58
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.42 E-value=0.00046 Score=70.17 Aligned_cols=73 Identities=5% Similarity=-0.068 Sum_probs=41.6
Q ss_pred EEEeCCCCCCCCCcch-hhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 42 MYVCGVTAYDLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh-~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
...||--|+|.+|||| +.+. ...+.|...|++++++.+ |.-.-+ . ...|.++++ .+++...+.+.+-++
T Consensus 42 ~vy~G~~PTg~lHlGhyl~~l----~~~~~lQ~~G~~~~~~i~--D~~a~~-~--~~~~~~~e~-i~~~~~~~~~~~la~ 111 (348)
T 2j5b_A 42 TAYNGFEPSGRIHIAQALITV----MNTNNMIECGGQMIIYIA--DWFAKM-N--LKMNGDINK-IRELGRYFIEVFKAC 111 (348)
T ss_dssp EEEEEECCCSSCBHHHHHHHH----HHHHHHHHTTEEEEEEEC--HHHHHH-T--TGGGGCHHH-HHHHHHHHHHHHHHT
T ss_pred EEEeccCCCCCCchhHHHHHH----HHHHHHHHcCCcEEEEec--cchhhh-C--CCCCCCHHH-HHHHHHHHHHHHHHh
Confidence 4456666669999999 4333 233444556998876653 211111 0 011234443 344666777788889
Q ss_pred CCCC
Q 009321 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 112 Gldp 115 (348)
T 2j5b_A 112 GINL 115 (348)
T ss_dssp TCCG
T ss_pred cCCc
Confidence 9873
No 59
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.28 E-value=0.00076 Score=69.67 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=45.8
Q ss_pred CcceEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~yg-~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
++.....||--|+| .+||||.- .+..++++.+..|..|.+. |.|.. +++.+ ..+++++ .++...+..+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v---~~~~~~~lQ~~~g~~~~i~--IaD~~-a~l~~----~~~~e~i-~~~~~~~~~~ 167 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTI---PFLLCKYMQDAFKIRLVIQ--ITDDE-KFLWK----SMRLEDA-MAYGRENIKD 167 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHH---HHHHHHHHHHHHTCCEEEE--ECHHH-HHHHS----SCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeeCCCCCcccHHHHH---HHHHHHHHHHhcCCcEEEE--eeChH-HHcCC----CCCHHHH-HHHHHHHHHH
Confidence 33344556788887 89999944 3444444444447776653 55543 22222 2566555 4456678888
Q ss_pred HHHcCCCC
Q 009321 117 MADLQCLP 124 (537)
Q Consensus 117 l~~L~i~~ 124 (537)
+-++|+.+
T Consensus 168 ~lA~GlDp 175 (406)
T 3tze_A 168 IVTLGFDP 175 (406)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCc
Confidence 88899873
No 60
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=97.26 E-value=0.00036 Score=70.91 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=46.0
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
...||--|+|.+||||...++.- + +.|.. |+++++..+ |+-.-+ . ..+++++ ..+..++..++.++|
T Consensus 6 ~i~sG~~PTG~lHLGn~vg~l~~--~-~~lQ~-~~~~~~~Ia--D~ha~~-~-----~~d~~~i-~~~~~~~~~~~lA~G 72 (348)
T 2yy5_A 6 RALTGIQASGKQHLGNYLGVMQS--L-IELQE-QCQLFVFVA--DLHSIT-V-----DFQPQAL-KQNNFDLVRTLLAVG 72 (348)
T ss_dssp EEEEEECCCTTCBHHHHHHTGGG--H-HHHHH-HSEEEEEEC--HHHHTT-S-----CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHH--H-HHHHh-CCcEEEEEc--Chhhcc-C-----CCCHHHH-HHHHHHHHHHHHHhC
Confidence 45667777799999997765411 1 12444 888765543 211100 0 0344443 335677788889999
Q ss_pred CCCCC--CccchhhhH
Q 009321 122 CLPPT--YQPRVSDHM 135 (537)
Q Consensus 122 i~~~~--~~~r~s~~~ 135 (537)
+.+ + .+...|+..
T Consensus 73 ldp-~k~~if~qS~~~ 87 (348)
T 2yy5_A 73 LDP-QKACLFLQSDLL 87 (348)
T ss_dssp CCT-TTEEEEEGGGCH
T ss_pred CCh-hHeEEEECCccc
Confidence 984 4 344555543
No 61
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.20 E-value=0.0045 Score=63.46 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=46.5
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 43 y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
..+|--|+|.+||||.-.++ ..+.++ .|++|++.. .|+-.-+ . ..+++++ ..+..+...++.++|
T Consensus 38 i~sG~~PTG~lHLGhyvGal-----~~~~~LQ~~~~~~~~I--aD~hAlt-~-----~~~~~~l-r~~~~~~aa~~lA~G 103 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAM-----KQFVELQHDYNSYFCI--VDQHAIT-V-----PQDRLEL-RKNIRNLAALYLAVG 103 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTH-----HHHHHTTTTSEEEEEE--CHHHHTT-S-----CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEeeCCCCcchHHHHHHHH-----HHHHHHHccCcEEEEE--ecceeee-c-----CCCHHHH-HHHHHHHHHHHHHhC
Confidence 46788888999999965553 222222 399987654 2332111 1 2455554 445567888889999
Q ss_pred CCCCC-Cccchhhh
Q 009321 122 CLPPT-YQPRVSDH 134 (537)
Q Consensus 122 i~~~~-~~~r~s~~ 134 (537)
+.+.- .+...|+.
T Consensus 104 lDp~kt~if~qS~v 117 (388)
T 3prh_A 104 LDPEKATLFIQSEV 117 (388)
T ss_dssp CCTTTEEEEEGGGS
T ss_pred CChhHeEEEecccc
Confidence 98422 23344543
No 62
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=97.19 E-value=0.00042 Score=73.29 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=45.6
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.....||--|+ |.+||||.-+++ +.|+|.. .|+.|+++.+ |.. ..+.. ..++++ ..++...+..
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~iilI~--D~~-a~igd----~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVIQMT--DDE-KYLWK----DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEEEEC--HHH-HHHHS----SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEEEEe--cce-eeecC----CCCHHH-HHHHHHHHHH
Confidence 4344556678888 899999976654 2444555 7988776654 211 11111 356555 4445556677
Q ss_pred HHHHcCCCC
Q 009321 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~L~i~~ 124 (537)
++-++|+.+
T Consensus 221 ~~lA~GlDp 229 (477)
T 1r6t_A 221 DIIACGFDI 229 (477)
T ss_dssp HHHTTCCCT
T ss_pred HHHHhCCCC
Confidence 788888874
No 63
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.09 E-value=0.00077 Score=70.38 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=45.7
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.....||--|+ |.+||||.-+++ .+. +|.. .|+.++++.+ |.-.-+ .. ...+++. ..++..+...
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~---~l~-~lQ~~~g~~~i~lI~--D~ta~l-~~---~~~t~e~-i~~~~~~~~~ 168 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV---FTK-WLQEVFDVPLVIELT--DDEKFL-FK---HKLTIND-VKNFARENAK 168 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH---HHH-HHHHHHTCCEEEEEC--HHHHHH-HC---TTCCHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH---HHH-HHHHHcCCeEEEEEe--ccccee-CC---CCCCHHH-HHHHHHHHHH
Confidence 3334556678888 899999966543 233 4554 7998776665 211111 10 1245544 4556666777
Q ss_pred HHHHcCCCC
Q 009321 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~L~i~~ 124 (537)
++-++|+.+
T Consensus 169 ~~lA~GlDp 177 (432)
T 2ip1_A 169 DIIAVGFDP 177 (432)
T ss_dssp HHHTTTCCG
T ss_pred HHHHhCCCC
Confidence 888888873
No 64
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=97.07 E-value=0.00083 Score=70.06 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=45.1
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.....||--|+ |.+||||.-+++ ..|+|.. .|+.++++.+ |... .+.. ..+++++ .++...+..
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~----~~~~lQ~~~G~~~iilIg--D~ta-~igd----~lt~e~i-~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVIQMT--DDEK-YLWK----DLTLDQA-YGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH----HHHHHHHHHTCCEEEEEC--HHHH-HHHS----SCCHHHH-HHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEEEEe--ccee-eecC----CCCHHHH-HHHHHHHHH
Confidence 4344556678888 899999976554 2344554 7988776654 2111 1111 3565554 445555677
Q ss_pred HHHHcCCCC
Q 009321 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~L~i~~ 124 (537)
++-++|+.+
T Consensus 174 ~~lA~GlDp 182 (437)
T 1r6u_A 174 DIIACGFDI 182 (437)
T ss_dssp HHHTTTCCG
T ss_pred HHHHhCCCc
Confidence 777888863
No 65
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.01 E-value=0.00076 Score=74.43 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=46.3
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECC-cchh-hHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009321 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-FTDV-DDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~-idd~-d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
....||--|+|.+|||| .+..-+..+.+...|++|+++.+ ++-+ +++ .|.+++++ +.+...+.+++.
T Consensus 41 ~~vy~G~~PTg~lHLG~---~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~-------~~~~~e~i-~~~~~~~~~~~l 109 (690)
T 3p0j_A 41 IRCYDGFEPSGRMHIAQ---GIFKAVNVNKCTAAGCEFVFWVADWFALMNDK-------VGGELEKI-RIVGRYLIEVWK 109 (690)
T ss_dssp EEEEEEECCCSCCBHHH---HHHHHHHHHHHHHTTEEEEEEECCGGGGGGCT-------TTTHHHHH-HHHHHHHHHHHH
T ss_pred ceEEeeecCCCcchhHh---hHHHHHHHHHHHHCCCcEEEEEeeeEEEecCC-------CcchHHHH-HHHHHHHHHHHH
Confidence 45566777889999999 22222223345567999876553 2221 111 12233333 334456677888
Q ss_pred HcCCCCC-CCccchhhhHH
Q 009321 119 DLQCLPP-TYQPRVSDHME 136 (537)
Q Consensus 119 ~L~i~~~-~~~~r~s~~~~ 136 (537)
++|+.+. ..+...|++++
T Consensus 110 A~GlDp~k~~i~~qS~~v~ 128 (690)
T 3p0j_A 110 AAGMDMDKVLFLWSSEEIT 128 (690)
T ss_dssp HTTCCGGGEEEEEHHHHHT
T ss_pred HcCCChHHeEEEechHHHH
Confidence 9998732 12344455443
No 66
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.93 E-value=0.0042 Score=63.62 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
.|+.-...+|--|+|.+||||.-.++ -.+++...|++|++. |.|+..-+ . ...+..+..+.+..++..+
T Consensus 67 ~gk~~~v~sG~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~--IaD~ha~t-~----~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 67 RGERVAVLTGFMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVA--IADAEAFA-V----RRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TTCCCEEEEEECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEE--ECHHHHHH-T----TCCCHHHHHHHHHHTTHHH
T ss_pred cCCCCEEEeCcCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEE--Eecchhhc-c----CCCCCHHHHHHHHHHHHHH
Confidence 34545556778888999999954332 345556679998765 33432211 1 1233445556677778888
Q ss_pred HHHcCCCCCC-CccchhhhHHH
Q 009321 117 MADLQCLPPT-YQPRVSDHMEQ 137 (537)
Q Consensus 117 l~~L~i~~~~-~~~r~s~~~~~ 137 (537)
+-++|+.+.. .+...|+....
T Consensus 136 ~lA~GlDP~kt~if~qS~~~~~ 157 (372)
T 3a04_A 136 MIALGLDPKDTEFYFQTNRGTP 157 (372)
T ss_dssp HHHHTCCTTTCEEEEGGGSCHH
T ss_pred HHHcCCChHHcchhhhccchHH
Confidence 8999998432 23444543333
No 67
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=96.85 E-value=0.0046 Score=62.54 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=44.9
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 120 (537)
...+|--|+|.+||||.-.++ ..+.++ .++++++.. .|+-.-+ . ..+++ ...++..+...++.++
T Consensus 17 ~i~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~i--aD~hA~t-~-----~~~~~-~~~~~~~~~~~~~lA~ 82 (346)
T 3n9i_A 17 IVFSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDCIYCI--VDLHAIT-A-----RQDPA-LLRKRTLDTLALYLAC 82 (346)
T ss_dssp EEEEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEE--CHHHHTT-S-----CCCHH-HHHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCcccHHHHHHHH-----HHHHHHHhhCcEEEEE--ecceeec-C-----CCCHH-HHHHHHHHHHHHHHHc
Confidence 344567777999999965543 344332 367776553 3332211 1 23454 3455667788888999
Q ss_pred CCCCCC-Cccchhh
Q 009321 121 QCLPPT-YQPRVSD 133 (537)
Q Consensus 121 ~i~~~~-~~~r~s~ 133 (537)
|+.+.. .+...|+
T Consensus 83 GlDp~k~~if~qS~ 96 (346)
T 3n9i_A 83 GIDPKKSTIFVQSH 96 (346)
T ss_dssp TCCTTTSEEEEGGG
T ss_pred CCCccceEEEeccc
Confidence 998432 2344454
No 68
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=96.78 E-value=0.0011 Score=69.08 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=46.5
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009321 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
|+.....||--|+ |.+||||.- .+-.+.++.+..|..|.+. |+|.. +.+. +...+++++. .+...+.++
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v---~~~~l~~lQ~~~g~~v~I~--IgD~~-a~~~---r~~lt~E~I~-~n~~~~~~~ 158 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLL---PFIFTKYLQDAFKCYVVIQ--ITDDE-KFLR---NRSLSYAEVD-SYTRENIKD 158 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHH---HHHHHHHHHHHHTCEEEEE--ECHHH-HHHH---CTTCCHHHHH-HHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHHH---HHHHHHHHHHccCceEEEE--eeCcH-Hhhc---ccCCCHHHHH-HHHHHHHHH
Confidence 3344556678888 899999944 3344445444447666663 56653 2221 1145665544 455677888
Q ss_pred HHHcCCCC
Q 009321 117 MADLQCLP 124 (537)
Q Consensus 117 l~~L~i~~ 124 (537)
+-++|+.+
T Consensus 159 ~lA~GlDp 166 (451)
T 3foc_A 159 IIACGFDP 166 (451)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCC
Confidence 88889873
No 69
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=96.33 E-value=0.0014 Score=66.35 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=45.7
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009321 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~ 121 (537)
...+|--|+|.+||||.-.++. -+.++.. |+++++.. .|+-.-+ . ..++++ ..++..++..++.++|
T Consensus 8 ~v~sG~~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~i--aD~ha~~-~-----~~~~~~-~~~~~~~~~~~~lA~G 74 (341)
T 3sz3_A 8 IVLSGVQPSGELSIGNYLGALR--QWQQMQD--DYDCQYCV--VDLHAIT-V-----RQDPQA-LHEATLDALAICLAVG 74 (341)
T ss_dssp EEEEEECSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEE--CHHHHTT-S-----CCCHHH-HHHHHHHHHHHHHHTT
T ss_pred EEEeCcCCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEE--ecceeEc-C-----CCCHHH-HHHHHHHHHHHHHHcC
Confidence 3456677779999999665541 1223333 57776553 3332211 1 245544 4556678888999999
Q ss_pred CCCCC-Cccchhhh
Q 009321 122 CLPPT-YQPRVSDH 134 (537)
Q Consensus 122 i~~~~-~~~r~s~~ 134 (537)
+.+.. .+...|+.
T Consensus 75 lDp~k~~i~~qS~v 88 (341)
T 3sz3_A 75 VDPKKSTLFVQSHV 88 (341)
T ss_dssp CCTTTSEEEEGGGC
T ss_pred CChhhcEEEeccch
Confidence 98432 23344543
No 70
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.02 E-value=0.0027 Score=63.83 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=48.1
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeeee-CCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..+|.+||.|... |.+...-...-++..+ + +-++..++.- +|+|||||.||.|++.| +..+|+.++=++.+.
T Consensus 191 ~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~-~-~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQWG-NITSGIDLTRRLHQNQ-V-FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCHH-HHHHHHHHHHHHHCCC-C-EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhHH-HHHHHHHHHHHhCCCC-c-eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 5789999999753 5444332223333332 2 2244455543 89999999999999988 677888888777653
No 71
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.75 E-value=0.0032 Score=64.14 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=37.5
Q ss_pred CeeEEEecccCcCcchhHHHHHHhhccCCCCceEEEEeeeee-eCCccccccCCCcccHHHHHHHcCchhhHHHHhhc
Q 009321 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~fpH~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++.++|.|... |.+...-...-++..++ +-++..++. .+|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 210 ~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQLG-NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 5789999999653 44433322233333332 235555553 499999999999999987 466888888887764
No 72
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=75.94 E-value=1.8 Score=43.79 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=25.9
Q ss_pred eEEEeCCCCCCC-CCcchhhHHHHHHHHHHHHHHCCCceEEEC
Q 009321 41 GMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (537)
Q Consensus 41 ~~y~~gPt~yg~-lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~ 82 (537)
....||--|+|+ +||||+.+.. .+ +.|...|++++++.
T Consensus 47 ~~vy~G~~PTg~sLHLGhl~~l~---~~-~~lQ~~G~~~~~lI 85 (356)
T 2pid_A 47 QTIYCGFDPTADSLHVGHLLALL---GL-FHLQRAGHNVIALV 85 (356)
T ss_dssp CEEEEEECCSSSSCBHHHHHHHH---HH-HHHHHTTCEEEEEE
T ss_pred CEEEEeecCCCCcccHHHHHHHH---HH-HHHHHCCCcEEEEE
Confidence 455677888896 9999955332 34 44445799988765
No 73
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=73.43 E-value=1.9 Score=42.94 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=26.2
Q ss_pred eEEEeCCCCCCC-CCcchhhHHHHHHHHHHHHHHCCCceEEECC
Q 009321 41 GMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (537)
Q Consensus 41 ~~y~~gPt~yg~-lHiGh~r~~v~~D~l~R~lr~~G~~V~~v~~ 83 (537)
....||--|+|+ +||||.- ..-.+ +.|...|++++++.+
T Consensus 34 ~~vy~G~~PTg~slHlGh~l---~l~~~-~~lQ~~g~~~~~~i~ 73 (322)
T 2yxn_A 34 IALVCGFDPTADSLHLGHLV---PLLCL-KRFQQAGHKPVALVG 73 (322)
T ss_dssp CEEEEEECCSSSSCBHHHHH---HHHHH-HHHHHTTCEEEEEEC
T ss_pred CEEEEeecCCCCcccHHHHH---HHHHH-HHHHHcCCcEEEEEc
Confidence 345677888899 9999944 23333 344556999887654
No 74
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=56.11 E-value=42 Score=36.77 Aligned_cols=80 Identities=10% Similarity=-0.061 Sum_probs=49.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEECCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009321 46 GVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 46 gPt~yg~lHiGh~r~~v~~D~l~R~lr~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L~i~~ 124 (537)
.| +.|.+||||+-.++ -+++.+++. .|.+|.++.+ |+-..| .. +.|.++++ ++.+...+.+++..+|..+
T Consensus 388 ~p-s~g~lHLGh~v~~~--k~l~~~~~~~~g~~v~ilIa--D~~A~i-~d--~~g~~~e~-i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 388 MP-ALLKVPLDVAEGMI--KVTKDFIAAHPEGTVTLVLP--DWSAVA-SD--EITGVEKD-ISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CC-CCSSCBHHHHHHHH--HHHHHHHHHCSSCEEEEEEC--TTHHHH-TT--CTTCCHHH-HHHHHHHHHHHHHHHTCCT
T ss_pred cC-CCCCcccchHHHHH--HHHHHHHHHcCCCeEEEEEe--cchhhh-CC--CCCCCHHH-HHHHHHHHHHHHHhcCCCc
Confidence 45 77999999976653 235677776 5777776643 332221 11 23455444 4556778889999999863
Q ss_pred CCCccchhhh
Q 009321 125 PTYQPRVSDH 134 (537)
Q Consensus 125 ~~~~~r~s~~ 134 (537)
-..+.+.|+.
T Consensus 459 k~~fv~~S~~ 468 (690)
T 3p0j_A 459 SVKIVTENEV 468 (690)
T ss_dssp TSEEEEHHHH
T ss_pred CeEEEECCch
Confidence 2345555543
No 75
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=26.46 E-value=3.9e+02 Score=24.76 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhcccHHHH----------------HHHHHHHHHHhcC--CChhHhH
Q 009321 424 IENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDV----------------LQLIEERAAARKN--KDFSKSD 485 (537)
Q Consensus 424 ~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------------~~li~~R~~aR~~--Kdf~~aD 485 (537)
++..+..++.-+||.|.++...+|.++-..+--..++-.+.+ .++...=.++|.. ..-..-|
T Consensus 40 fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dD 119 (234)
T 3cuq_A 40 FRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDD 119 (234)
T ss_dssp HHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHH
T ss_pred HHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHH
Confidence 455677888889998874333344432110000000001111 1222222234443 3556777
Q ss_pred HHHH--HhHhC--CCEEEecCCceEEEeCCcchhhh
Q 009321 486 QIRA--DLTRK--GIALMDMGKETIWRPCVLVEQEQ 517 (537)
Q Consensus 486 ~IRd--~L~~~--GI~l~D~~~Gt~W~~~~~~~~~~ 517 (537)
-+|- .|..+ |+.|..-+ |..|-+-+|.++..
T Consensus 120 i~rAik~L~~LG~g~~v~~~~-g~~~VqSvp~el~~ 154 (234)
T 3cuq_A 120 LIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELNM 154 (234)
T ss_dssp HHHHHHHHGGGBTTCEEEEET-TEEEEECSCCCCCH
T ss_pred HHHHHHHHHhcCCCeEEEEEC-CEEEEEeCCCccch
Confidence 7774 46666 89998877 88898889987443
Done!