BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009322
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 412 DRKDVIARGVKSAFATLVHKGVVQSLDVL---VSCKTLSPYLKERLRKIQVLEVRV 464
D KDVI RGV S VH+ V V+ + LSP E +R+ E +
Sbjct: 97 DPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHI 152
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin
Mdia1; The DidDAD COMPLEX
Length = 233
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 349 KNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDN 408
K +ET + L + D +V N+M +L +C +P+ DM +L+ + +
Sbjct: 89 KTMLETEEGILLLVRAM--DPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146
Query: 409 YDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVS 442
+V+R + G+KS + + G +Q ++ L++
Sbjct: 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 180
>pdb|1ADW|A Chain A, Pseudoazurin
pdb|1ADW|B Chain B, Pseudoazurin
pdb|3ERX|A Chain A, High-Resolution Structure Of Paracoccus Pantotrophus
Pseudoazurin
pdb|3ERX|B Chain B, High-Resolution Structure Of Paracoccus Pantotrophus
Pseudoazurin
Length = 123
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 23 QAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFA 64
+ ++ +SK+ + LTV P LYGV C PHF
Sbjct: 51 EGVESFKSKINESYTLTVTEPG---------LYGVKCTPHFG 83
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 349 KNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDN 408
K +ET + L + D +V N+M +L +C +P+ DM +L+ + +
Sbjct: 95 KTMLETEEGILLLVRAM--DPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 152
Query: 409 YDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVS 442
+V+R + G+KS + + G +Q ++ L++
Sbjct: 153 DEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 186
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 367 FDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFA 426
D +V N+M +L +C +P+ DM +L+ + + +V+R + G+KS +
Sbjct: 105 MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 164
Query: 427 TLVHKGVVQSLDVLVS 442
+ G +Q ++ L++
Sbjct: 165 IALKVGCLQLINALIT 180
>pdb|3Q5Z|A Chain A, Crystal Structure Of Virulent Allele Rop5b Pseudokinase
Domain
pdb|3Q60|A Chain A, Crystal Structure Of Virulent Allele Rop5b Pseudokinase
Domain Bound To Atp
Length = 371
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 2 ASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAIL 54
A++L+G +P EA + L + DA+ + +PPFA P +Y N +L
Sbjct: 116 AARLLGESPEEARDRRRLLLPS--DAVAVQSQPPFAQLSPGQDDYAVANYLLL 166
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 349 KNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDN 408
K +ET + L + D +V N+M +L +C +P+ DM +L+ + +
Sbjct: 93 KTMLETEEGILLLVRAM--DPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150
Query: 409 YDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVS 442
+V+R + G+KS + + G +Q ++ L++
Sbjct: 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 184
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 367 FDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFA 426
D +V N+M +L +C +P+ DM +L+ + + +V+R + G+KS +
Sbjct: 171 MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 230
Query: 427 TLVHKGVVQSLDVLVS 442
+ G +Q ++ L++
Sbjct: 231 IALKVGCLQLINALIT 246
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 367 FDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFA 426
D +V N+M +L +C +P+ DM +L+ + + +V+R + G+KS +
Sbjct: 171 MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 230
Query: 427 TLVHKGVVQSLDVLVS 442
+ G +Q ++ L++
Sbjct: 231 IALKVGCLQLINALIT 246
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 367 FDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFA 426
D +V N+M +L +C +P+ DM +L+ + + +V+R + G+KS +
Sbjct: 109 MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 168
Query: 427 TLVHKGVVQSLDVLVS 442
+ G +Q ++ L++
Sbjct: 169 IALKVGCLQLINALIT 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,220,700
Number of Sequences: 62578
Number of extensions: 589941
Number of successful extensions: 1413
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 11
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)