Query 009322
Match_columns 537
No_of_seqs 75 out of 77
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 23:09:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10189 DUF2356: Conserved pr 100.0 1.3E-99 3E-104 740.3 20.1 229 233-462 1-229 (230)
2 KOG4262 Uncharacterized conser 100.0 9.9E-50 2.1E-54 411.8 21.3 459 2-491 7-468 (496)
3 PRK01026 tetrahydromethanopter 43.5 20 0.00044 31.0 2.5 34 15-59 25-58 (77)
4 PF08158 NUC130_3NT: NUC130/3N 43.4 51 0.0011 26.3 4.6 50 385-434 3-52 (52)
5 TIGR01149 mtrG N5-methyltetrah 39.5 26 0.00056 29.8 2.5 34 15-59 22-55 (70)
6 PF04210 MtrG: Tetrahydrometha 36.9 32 0.00069 29.3 2.6 34 15-59 22-55 (70)
7 KOG3926 F-box proteins [Amino 31.8 6.8E+02 0.015 26.9 11.9 46 68-113 81-130 (332)
8 COG4064 MtrG Tetrahydromethano 30.5 39 0.00085 28.9 2.1 34 15-59 25-58 (75)
9 KOG0980 Actin-binding protein 29.5 1.2E+03 0.025 28.9 14.7 95 170-283 201-298 (980)
10 PF11817 Foie-gras_1: Foie gra 25.4 2.7E+02 0.0059 27.9 7.6 59 42-100 175-234 (247)
11 COG5308 NUP170 Nuclear pore co 23.3 76 0.0016 38.6 3.5 57 360-417 934-1007(1263)
12 PF14911 MMS22L_C: S-phase gen 23.2 9.8E+02 0.021 26.4 11.6 30 103-132 229-266 (373)
13 PF12717 Cnd1: non-SMC mitotic 22.7 6.6E+02 0.014 23.8 13.9 129 99-240 39-172 (178)
14 KOG1062 Vesicle coat complex A 22.2 7.2E+02 0.016 30.2 10.9 164 43-226 49-232 (866)
15 KOG3540 Beta amyloid precursor 21.8 1.6E+02 0.0036 33.5 5.5 60 409-469 377-436 (615)
16 PF05804 KAP: Kinesin-associat 21.6 1.4E+03 0.031 27.2 18.4 113 309-425 550-666 (708)
17 PF00790 VHS: VHS domain; Int 21.0 4.9E+02 0.011 23.8 7.8 118 99-240 20-138 (140)
18 PF08767 CRM1_C: CRM1 C termin 21.0 8.4E+02 0.018 25.7 10.4 118 80-218 66-188 (319)
No 1
>PF10189 DUF2356: Conserved protein (DUF2356); InterPro: IPR019333 The Integrator complex is involved in small nuclear RNA (snRNA) U1 and U2 transcription, and in their 3'-box-dependent processing. This complex associates with the C-terminal domain of RNA polymerase II largest subunit and is recruited to the U1 and U2 snRNAs genes []. This entry represents subunit 3 of this complex. The function of this subunit is unknown.
Probab=100.00 E-value=1.3e-99 Score=740.31 Aligned_cols=229 Identities=56% Similarity=0.982 Sum_probs=226.3
Q ss_pred HHHHHHhhCCCCCCCCCcccchhhhhccCCccchhccCChHHHHHHHHHHhhccCchhHHHHHHHHHhhcCCCCCccchh
Q 009322 233 AIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIV 312 (537)
Q Consensus 233 ~iWkDll~nP~~~~~~~f~~i~qll~~rTs~~~l~~RIspeME~kL~Fml~~Vk~Gn~kryq~WF~kkyL~tpesesL~~ 312 (537)
+||||+++||+++ +|+|+||+|+|+++||+||+++|||||||+||.||+++||+|+|||||+||++|||+|||||+|||
T Consensus 1 ~lwrDll~np~~l-~p~f~gv~ql~~~~T~~~fl~~RispemE~kl~Fml~~Vk~G~~kryq~WF~~kyL~~pesesL~~ 79 (230)
T PF10189_consen 1 QLWRDLLLNPSSL-SPTFTGVSQLMQIRTSRRFLQSRISPEMERKLRFMLSNVKFGNQKRYQDWFAKKYLSTPESESLRP 79 (230)
T ss_pred CcHHHHhhCcccc-CCCccCHHHHHhCCCCchhhhhhCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHhcCCCCcchHHH
Confidence 4899999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCchhhhcccchhHHHHHHHHHhcCChHHHHHhHHHHHHhhhcccCCCCCccccchhHHHHHhhcCCCh
Q 009322 313 DIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYI 392 (537)
Q Consensus 313 DlIRfIc~v~hP~Nevl~SdiiPRWavIgWLL~sc~~~~~~~~aKLALFyDWLffd~~~dniMnIEPaiLlm~~s~~~~p 392 (537)
|+||||||+|||+|||+||||+||||+||||+++|++++++||||||||||||||||++|||||||||||||+||+++||
T Consensus 80 DlIRfIc~~~hP~Nevl~S~i~pRwavIgwLl~~c~~~~~~~~~KLaLfyDWLffd~~~dniMnIEPaiLvm~~sl~~~p 159 (230)
T PF10189_consen 80 DLIRFICCVYHPTNEVLQSDIIPRWAVIGWLLTTCKSNVEQQNAKLALFYDWLFFDPRNDNIMNIEPAILVMRHSLKSHP 159 (230)
T ss_pred HHHHHHHHhcCChhcccccchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCCCCCceeeecHHHHHHHHHcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccCCchHHHHHHhHHHHHHHHHHcCCcccccccccCCCCCHHHHHHHHHhhcccc
Q 009322 393 DMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEV 462 (537)
Q Consensus 393 ~it~sLLeFL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k~Vv~sL~~l~~~pkLd~~L~~~lr~~f~~~~ 462 (537)
+||+|||||||+++++|+|+++++||+||+|||++|+||||++||+||++|||||++|||++|++|+++.
T Consensus 160 ~it~sLLeFL~~~v~~~~p~~~~~I~~gV~~a~~~i~~k~vv~sl~~l~~~~~ld~~lre~lr~~F~~f~ 229 (230)
T PF10189_consen 160 QITNSLLEFLCRIVENFDPPRRDRIRRGVRNAFRTIVEKGVVPSLSPLFDNPKLDPELRELLRETFPEFC 229 (230)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHcCCcCChHHhcCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG4262 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.9e-50 Score=411.85 Aligned_cols=459 Identities=42% Similarity=0.644 Sum_probs=431.2
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHHHhccCCCccccCCCchhhhHHHHHHHHHHhcCCCchHHHHHHHHHHhhccHHH
Q 009322 2 ASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYAL 81 (537)
Q Consensus 2 ~skL~~~~~~e~~delE~~le~~~~~l~~~l~~~~~~~v~~~~~~e~v~~gLLY~ILtep~~a~~~~r~L~~i~rDg~~~ 81 (537)
+|++...+.+|+.+.+|-.+.+++.-+|+.+++.++.+++.+|+|-+.+.+..||+|.+|+..+...+.++.-..|||.+
T Consensus 7 ~s~~~~vs~~~~~~~~~~~~~~~~~~~~~f~~~qls~~~s~~qe~l~~~~~~~~~vl~e~~~ek~l~ks~~~ply~~frf 86 (496)
T KOG4262|consen 7 TSKLIRVSLHEVENQLELSLRQAFENLQPFLRPQLSLELSDPQEYLELNKAIVYGVLCEPNSEKTLIKSLHAPLYDGFRF 86 (496)
T ss_pred hhHhHhhhHhhhhhHHHHHHhhccccccccccccceeecCCHHHHHHHhhhhhccccCCCcchhHHHHHhccHHHHHHHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhhhcc
Q 009322 82 FVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEE 161 (537)
Q Consensus 82 vi~~L~~li~ekf~kL~d~~r~QLLwL~rElI~~~v~~iD~v~~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~l~~ 161 (537)
+..++..++.++|.++.++.+.|++|.+.+|+-+.-.|+..+...+.|++. ...+.+.|++.++.
T Consensus 87 l~~~~~d~~s~~~~~~llSe~~q~ip~igy~lly~~~~~~~l~~~~n~~~s---------------~~~~t~~~~~~~d~ 151 (496)
T KOG4262|consen 87 LTSLLIDIVSELYVKLLLSEKIQLIPVIGYMLLYSSVGIEDLVVSLNRRIS---------------ISLFTEKWECLLDD 151 (496)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999984 45788899999999
Q ss_pred CchhHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhHHHHHHHHhhC
Q 009322 162 EPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLN 241 (537)
Q Consensus 162 ~p~Ll~~~vytfLRLI~DH~~~~~~~~~~~Lrq~Ev~fc~~lir~rf~dC~~IGRDlVRlL~~v~~iPef~~iWkDll~n 241 (537)
.|..+.+++|.++|+++||.....--.+....+.+++||+.+-|.--+-.+.||||+||.|++..+.-+|..+|+|++.|
T Consensus 152 ~~~~l~scL~~dl~ll~~~~~~l~~~llp~iyref~~~~~~~~~ll~~~~~~Id~~~i~~l~~~~~~g~l~~f~~D~v~n 231 (496)
T KOG4262|consen 152 SPLVLTSCLYSDLRLLADHYRVLGVVLLPNIYREFIKFCVKMFRLLLHLSLKIDRDLILLLQDLSHVGELREFWNDLVSN 231 (496)
T ss_pred cHHHHHHHHHHHHHHHHhhceEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhhhhhHhhHHHH
Confidence 99999999999999999998765555678899999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccchhhhhccCCccchhccCChHHHHHHHHHHhhccCchhHHHHHHHHHhhcCCCCCccchhhhhhhhhcc
Q 009322 242 PSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCG 321 (537)
Q Consensus 242 P~~~~~~~f~~i~qll~~rTs~~~l~~RIspeME~kL~Fml~~Vk~Gn~kryq~WF~kkyL~tpesesL~~DlIRfIc~v 321 (537)
-+.|.+.-.|+.+|..-||.|+||..|+|++..++.|.+++|++||.+++|..++-+..-.|+|||+||.
T Consensus 232 ----------~~~qsldweT~eQyclwqiv~Ah~vpLr~il~ilp~l~ak~Hpeals~~LLllkre~ep~~eiVR~vlsr 301 (496)
T KOG4262|consen 232 ----------HCSQSLDWETSEQYCLWQIVPAHEVPLRFILGILPLLSAKRHPEALSKKLLLLKREEEPLIEIVRFVLSR 301 (496)
T ss_pred ----------HHHHHHhhhhhhhhHhhhhhhhcCCcHHHHhhhhhhcccccCHHHHHHHHHhcccccccHHHHHHHHHcC
Confidence 4778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhcccchhHHHHHHHHHhcCCh-HHHHHhHHHHHHhhhcccCCCCCccccchhHHHHHhhcCCChhHHHHHHH
Q 009322 322 HHPSNEIIQSDIIPRWAVIGWLLKSCQKN-HVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLD 400 (537)
Q Consensus 322 ~hP~Nevl~SdiiPRWavIgWLL~sc~~~-~~~~~aKLALFyDWLffd~~~dniMnIEPaiLlm~~s~~~~p~it~sLLe 400 (537)
+||+|+..-+.+++|||+ |++-.|+.. ...+..-.+|||||+| +..+|+||.||+-+.|+.|.+++|+|++.|++
T Consensus 302 ~~p~kdd~fttsalR~~i--~~~ewCqk~~eilaevIksLL~~n~~--~s~pnkr~~~pk~~s~~~s~ptl~QIlehL~h 377 (496)
T KOG4262|consen 302 IHPTKDDIFTTSALRWAI--WLLEWCQKNHEILAEVIKSLLYDNLF--ESIPNKRNVEPKALSMVWSIPTLPQILEHLLH 377 (496)
T ss_pred CCCCCCchhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCc--ccCCccccCCccccccccccccHHHHHHHHHH
Confidence 999999999999999999 999999998 6677888999999999 67799999999999999999999999999999
Q ss_pred HHHHhhhccCCchHHHHHHhHHHHHHHHHHcCCcccccccccCCCCCHHHHHHHHHhhcccccc--ccccccccccCCCC
Q 009322 401 FLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRV--PNELHLLHISQHSM 478 (537)
Q Consensus 401 FL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k~Vv~sL~~l~~~pkLd~~L~~~lr~~f~~~~~~--~~~~~~~~~~~~~~ 478 (537)
|....++. -..++.+.+++.+||+.+-.+||..++....+++.|.++...++.+..++++.. +++.+.-++-+.+.
T Consensus 378 frl~lve~--tkqr~t~~~m~~sALQea~as~~~~~kk~F~dlfaLA~ey~~~~g~~~~s~q~~k~hss~~~vn~~~~~~ 455 (496)
T KOG4262|consen 378 FRLHLVET--TKQRDTIVRMLTSALQEAEASGVIRSKKIFLDLFALAPEYKKKLGNLLSSHQEKKVHSSLNQVNVLSKQT 455 (496)
T ss_pred HHHHHHhc--cccceeehHHHHHHHHHHHhhccHHHHHHHhhhhhhhHHHhhhhcCCcccccccccCCcHHhhhhccccc
Confidence 99999987 567788999999999999999999999999999999999999999999999866 55566666667777
Q ss_pred CCCCCCCCCCCCc
Q 009322 479 ETFNLPSPTPCSE 491 (537)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (537)
-+++..+++-||.
T Consensus 456 ~~p~~a~~~~~S~ 468 (496)
T KOG4262|consen 456 VLPSEANLKDCST 468 (496)
T ss_pred cCccccccccccc
Confidence 8888888887764
No 3
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=43.46 E-value=20 Score=30.96 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHHhccCCCccccCCCchhhhHHHHHHHHHHhc
Q 009322 15 NPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLC 59 (537)
Q Consensus 15 delE~~le~~~~~l~~~l~~~~~~~v~~~~~~e~v~~gLLY~ILt 59 (537)
|++|+|.|....++.++.- ..+ --.+|+|||+..
T Consensus 25 D~iEeKVEftn~Ei~Qr~G----kkv-------GRDiGIlYG~vi 58 (77)
T PRK01026 25 DEIEEKVEFTNAEIFQRIG----KKV-------GRDIGILYGLVI 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHh----HHh-------hhHHHHHHHHHH
Confidence 7888999988888877663 111 125788888753
No 4
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=43.44 E-value=51 Score=26.33 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=42.6
Q ss_pred HhhcCCChhHHHHHHHHHHHhhhccCCchHHHHHHhHHHHHHHHHHcCCc
Q 009322 385 VCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVV 434 (537)
Q Consensus 385 ~~s~~~~p~it~sLLeFL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k~Vv 434 (537)
.|-.+-||+.+...=+=|+.+..+.+-.+...+|..+..|+=.+..|++|
T Consensus 3 a~va~cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRnK~~I 52 (52)
T PF08158_consen 3 AHVAHCYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILLRNKDLI 52 (52)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHccCCC
Confidence 35567899988888888888888888888888999999999999999886
No 5
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=39.48 E-value=26 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHHhccCCCccccCCCchhhhHHHHHHHHHHhc
Q 009322 15 NPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLC 59 (537)
Q Consensus 15 delE~~le~~~~~l~~~l~~~~~~~v~~~~~~e~v~~gLLY~ILt 59 (537)
|++|+|.|....++.++.-. .+ --.+|+|||+..
T Consensus 22 d~iEeKVEf~~~E~~Qr~Gk----k~-------GRDiGIlYG~vi 55 (70)
T TIGR01149 22 DEIEEKVEFVNGEVAQRIGK----KV-------GRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhH----Hh-------hhHHHHHHHHHH
Confidence 78888888888888766531 11 125788888753
No 6
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=36.93 E-value=32 Score=29.31 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHHhccCCCccccCCCchhhhHHHHHHHHHHhc
Q 009322 15 NPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLC 59 (537)
Q Consensus 15 delE~~le~~~~~l~~~l~~~~~~~v~~~~~~e~v~~gLLY~ILt 59 (537)
|++|+|.|....++.++.- ..+ -=.+|+|||+..
T Consensus 22 d~iEeKvEf~~~Ei~Qr~G----kki-------GRDiGIlYG~v~ 55 (70)
T PF04210_consen 22 DEIEEKVEFTNAEIAQRAG----KKI-------GRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHhHHHHHHHHHh----HHh-------hhHHHHHHHHHH
Confidence 6778888877777766653 111 125788888753
No 7
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.78 E-value=6.8e+02 Score=26.95 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=34.4
Q ss_pred HHHHHH--Hhhcc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009322 68 IKHLHA--IVTDG--YALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMI 113 (537)
Q Consensus 68 ~r~L~~--i~rDg--~~~vi~~L~~li~ekf~kL~d~~r~QLLwL~rElI 113 (537)
|.-|.+ -++|- +++++..|.-+..++.+-|--.++.|++-++.+.+
T Consensus 81 f~RLDfsrav~D~rrFnyickllqliak~ql~sLsg~Aqknll~ile~v~ 130 (332)
T KOG3926|consen 81 FNRLDFSRAVRDRRRFNYICKLLQLIAKSQLTSLSGSAQKNLLNILEKVV 130 (332)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCCchHHHHHHHHHHHHHH
Confidence 444444 45665 77877777666779999999999999998887654
No 8
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=30.50 E-value=39 Score=28.90 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHHhccCCCccccCCCchhhhHHHHHHHHHHhc
Q 009322 15 NPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLC 59 (537)
Q Consensus 15 delE~~le~~~~~l~~~l~~~~~~~v~~~~~~e~v~~gLLY~ILt 59 (537)
||+|+|.|--..++-++.- .-++ =.||+|||+..
T Consensus 25 deieekvef~~~Ev~Qr~G----kkiG-------RDIGILYGlVI 58 (75)
T COG4064 25 DEIEEKVEFVNGEVYQRIG----KKIG-------RDIGILYGLVI 58 (75)
T ss_pred HHHHHHHHhhHHHHHHHHH----HHhc-------chHHHHHHHHH
Confidence 5667777765555554442 1121 26899998754
No 9
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=29.51 E-value=1.2e+03 Score=28.92 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=54.5
Q ss_pred HHHHH-HHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhHHHHHHHHhhCCCCC-CC
Q 009322 170 LYTFL-RLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEF-KT 247 (537)
Q Consensus 170 vytfL-RLI~DH~~~~~~~~~~~Lrq~Ev~fc~~lir~rf~dC~~IGRDlVRlL~~v~~iPef~~iWkDll~nP~~~-~~ 247 (537)
+|.|+ |++-..++-.|...++.+|.+--....+ +|+=|.+|-.+ +++|++++=|.-+ +.
T Consensus 201 lY~y~vkmlfkLHs~vp~dtLeghRdRf~~qf~r-Lk~FY~~~S~l------------------qYfk~LI~IP~LP~~~ 261 (980)
T KOG0980|consen 201 LYDYLVKMLFKLHSQVPPDTLEGHRDRFHTQFER-LKQFYADCSNL------------------QYFKRLIQIPTLPEDA 261 (980)
T ss_pred HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHH-HHHHHHhcchh------------------HHHHHHhcCCCCCCCC
Confidence 67764 5555544334555688877665555444 45566666432 2344555545443 46
Q ss_pred CCcccchhhhhccCCccchhccCChHHH-HHHHHHHh
Q 009322 248 PGFSDISQLYHLRTSSRYFLTRITPEME-TQLRFLLT 283 (537)
Q Consensus 248 ~~f~~i~qll~~rTs~~~l~~RIspeME-~kL~Fml~ 283 (537)
|+|-....+=..+||.-|+..-=||+-| ....|+..
T Consensus 262 Pnf~~~sdl~~~~~pvv~i~~Epsp~se~~~~n~~~~ 298 (980)
T KOG0980|consen 262 PNFLRQSDLESYITPVVYIPSEPSPVSEDEEMNLPDT 298 (980)
T ss_pred cccccccchhhcCCCceecCCCCCCCCCccccccccc
Confidence 7776666665678888888755544444 44455544
No 10
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.37 E-value=2.7e+02 Score=27.94 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=48.1
Q ss_pred CchhhhHHHHHHHHHHhcCCCchHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHhhHHH
Q 009322 42 NPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAI-VTDGYALFVSLLVKVVKELYVKLFDS 100 (537)
Q Consensus 42 ~~~~~e~v~~gLLY~ILtep~~a~~~~r~L~~i-~rDg~~~vi~~L~~li~ekf~kL~d~ 100 (537)
....|-.+.+|=.|.-+.|.+.|.++|+.+... -++||......+...+.+++.++.+.
T Consensus 175 R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 175 RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 345677888999999999999999999999665 66999998888877777777776654
No 11
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=23.27 E-value=76 Score=38.57 Aligned_cols=57 Identities=26% Similarity=0.621 Sum_probs=44.1
Q ss_pred HHHhhhcccCCCCCccccchhHHH---HHhhcCCChhHHHHHHHHHH-------------Hhhh-ccCCchHHHH
Q 009322 360 LFYDWLFFDESVDNIMNIEPAMLL---MVCSIPRYIDMTHTLLDFLF-------------LLVD-NYDVDRKDVI 417 (537)
Q Consensus 360 LFyDWLffd~~~dniMnIEPaiLl---m~~s~~~~p~it~sLLeFL~-------------~~v~-~f~P~~~~~I 417 (537)
-|||||-|+-.+|-...|+-.+++ |.+++++ +.|++-|-.|.. .++. +|+-++.++|
T Consensus 934 cfYDWlv~~~r~d~Li~IdspfilpyLkeka~ss-lkIsnLlW~Yy~kre~f~eaa~vLy~LAtsnfd~sLeeRI 1007 (1263)
T COG5308 934 CFYDWLVFKGRTDRLIKIDSPFILPYLKEKAMSS-LKISNLLWKYYVKREDFVEAAQVLYELATSNFDVSLEERI 1007 (1263)
T ss_pred hhhhhHhhcCccceEEEeccHHHHHHHHHhcccC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHH
Confidence 389999999999999999988875 5577776 888887766544 3444 7888887776
No 12
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.19 E-value=9.8e+02 Score=26.36 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhc-----cC---chhHHHHHHHhhhc
Q 009322 103 NQLIWVTKEMINVS-----AV---GFDGLLVSLLRQIV 132 (537)
Q Consensus 103 ~QLLwL~rElI~~~-----v~---~iD~v~~~LLRqi~ 132 (537)
.+++|++.++++.- .. -++.+...+|+++-
T Consensus 229 ~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~ 266 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLM 266 (373)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHh
Confidence 56677777776651 11 34455555666655
No 13
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=22.67 E-value=6.6e+02 Score=23.78 Aligned_cols=129 Identities=13% Similarity=0.155 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHH-HHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhhhccCchhHHHHHHHHHHHH
Q 009322 99 DSVKNQLIWVTKEMINVSAVGFDGLL-VSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLL 177 (537)
Q Consensus 99 d~~r~QLLwL~rElI~~~v~~iD~v~-~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~l~~~p~Ll~~~vytfLRLI 177 (537)
+.+|.|-+-.+..|+...--.+.+.+ ..+++.+ .|-+++=..+|...+.=+. .++.|..+...+...+--+
T Consensus 39 ~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l--~D~~~~Ir~~A~~~~~e~~------~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 39 PLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL--VDENPEIRSLARSFFSELL------KKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH--cCCCHHHHHHHHHHHHHHH------HhccchHHHHHHHHHHHHH
Confidence 46788888888888887666777766 6777766 4433332223322222221 2225666666655555555
Q ss_pred Hhhhccccc-chhhHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHhhhccCchhHHHHHHHHhh
Q 009322 178 ADHCRLLTN-SKLDVLKCLEIDFCVKMLRE---QFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240 (537)
Q Consensus 178 ~DH~~~~~~-~~~~~Lrq~Ev~fc~~lir~---rf~dC~~IGRDlVRlL~~v~~iPef~~iWkDll~ 240 (537)
.+....... +.-..=|++-.+|....+.+ ++.-...|...+. .... -+=+..|+|+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~---~~~~--~~~~~~~~d~~~ 172 (178)
T PF12717_consen 111 NNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFL---NAVV--DEDERVLRDILY 172 (178)
T ss_pred hCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH---HHcc--cccHHHHHHHHH
Confidence 543211000 12345567778888888872 3333444444443 2221 345678888764
No 14
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.19 E-value=7.2e+02 Score=30.22 Aligned_cols=164 Identities=16% Similarity=0.213 Sum_probs=83.6
Q ss_pred chhhhHHHHHHHHHHhcCCCchHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhH
Q 009322 43 PQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDG 122 (537)
Q Consensus 43 ~~~~e~v~~gLLY~ILtep~~a~~~~r~L~~i~rDg~~~vi~~L~~li~ekf~kL~d~~r~QLLwL~rElI~~~v~~iD~ 122 (537)
...|+.+..=+.-.+|-.|.-. .+...|.++..|++.. +=|.=.=..|.-.-|.-++-|+-..++.--..-+-
T Consensus 49 ~~r~rniaKLlYi~MLGypahF-GqieclKLias~~f~d------KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq 121 (866)
T KOG1062|consen 49 RKRHRNIAKLLYIHMLGYPAHF-GQIECLKLIASDNFLD------KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQ 121 (866)
T ss_pred HHHHHHHHHHHHHHHhCCCccc-hhhHHHHHhcCCCchH------HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCe
Confidence 3456666555555677776642 3456778888888643 21221222334445666666666777643222222
Q ss_pred HHHHHHhhhcCCCCCCC-chhHHHHHHHHHhhhhhhhh------------ccCchhHHHHHHHHHHHHHh-hhcccccch
Q 009322 123 LLVSLLRQIVGGDFSDG-NLWLCFELVSLFLGKWDCLL------------EEEPLVLSSALYTFLRLLAD-HCRLLTNSK 188 (537)
Q Consensus 123 v~~~LLRqi~gGD~s~k-nv~L~e~lldil~~~~~~~l------------~~~p~Ll~~~vytfLRLI~D-H~~~~~~~~ 188 (537)
+++.+-=+.-|-=+|+. --.|+-.+-+++... .-++ .+-|.++...+-.|-.+++| |+++
T Consensus 122 ~vVglAL~alg~i~s~EmardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGV----- 195 (866)
T KOG1062|consen 122 YVVGLALCALGNICSPEMARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGV----- 195 (866)
T ss_pred eehHHHHHHhhccCCHHHhHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCce-----
Confidence 22222222222223333 123555555555432 2233 33466666666777777776 3322
Q ss_pred hhHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHhhhcc
Q 009322 189 LDVLKCLEIDFCVKMLRE------QFQLCLKIGRDLIRLLQDLV 226 (537)
Q Consensus 189 ~~~Lrq~Ev~fc~~lir~------rf~dC~~IGRDlVRlL~~v~ 226 (537)
.-.-+.+|..++.+ +|-| +-++||+.|-++.
T Consensus 196 ----L~~~l~l~~e~c~~~~~~l~~fr~---l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 196 ----LIAGLHLITELCKISPDALSYFRD---LVPSLVKILKQLT 232 (866)
T ss_pred ----eeeHHHHHHHHHhcCHHHHHHHHH---HHHHHHHHHHHHh
Confidence 22246677777766 5555 4566666665444
No 15
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=21.82 E-value=1.6e+02 Score=33.50 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=50.6
Q ss_pred cCCchHHHHHHhHHHHHHHHHHcCCcccccccccCCCCCHHHHHHHHHhhccccccccccc
Q 009322 409 YDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELH 469 (537)
Q Consensus 409 f~P~~~~~Ir~gV~~af~~i~~k~Vv~sL~~l~~~pkLd~~L~~~lr~~f~~~~~~~~~~~ 469 (537)
-+|.-++++|--|..-++.|-+ |+=+||+-|-++|.+..++|..+..++....--+.++.
T Consensus 377 vDpkkAaqmk~qV~thLrvIee-R~NqsLslL~~~P~vaqeirdev~ell~~e~~~~de~~ 436 (615)
T KOG3540|consen 377 VDPKKAAQMKSQVMTHLRVIEE-RINQSLSLLYDVPAVAQEIRDEVDELLQVEDSHDDEFS 436 (615)
T ss_pred cChHHHHHHHHHHHHHHHHHHH-HhcchhHHHhcChHHHHHHHHHHHHHHhhhhcChhhhc
Confidence 3788889999999999999877 99999999999999999999999988876654443433
No 16
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=21.61 E-value=1.4e+03 Score=27.25 Aligned_cols=113 Identities=18% Similarity=0.321 Sum_probs=59.5
Q ss_pred cchhhhhhhhhc-ccCCCch--hhhcccchhHHHHHHHHHhcCChHHHHHhHHHHHHhhhcccCCCCCccccchhHHHHH
Q 009322 309 TLIVDIIRFICC-GHHPSNE--IIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMV 385 (537)
Q Consensus 309 sL~~DlIRfIc~-v~hP~Ne--vl~SdiiPRWavIgWLL~sc~~~~~~~~aKLALFyDWLffd~~~dniMnIEPaiLlm~ 385 (537)
.+.=++|.++-. +.-|.-+ +..|++++. +|+ |+++.+..-+.---=+-.||=+|++++.++-+|.=.=+.--|.
T Consensus 550 Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~--Li~-LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~yli 626 (708)
T PF05804_consen 550 DLLLEVVILLGTLASDPECAPLLAKSGLIPT--LIE-LLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLI 626 (708)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhCChHHH--HHH-HHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHH
Confidence 466667766543 2222222 224567774 443 4466664432222335678999999776565443111222222
Q ss_pred hhcC-CChhHHHHHHHHHHHhhhccCCchHHHHHHhHHHHH
Q 009322 386 CSIP-RYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAF 425 (537)
Q Consensus 386 ~s~~-~~p~it~sLLeFL~~~v~~f~P~~~~~Ir~gV~~af 425 (537)
--++ +++. ....=|-..-++.+|++....+||+-=+-+.
T Consensus 627 dL~~d~N~~-ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~h 666 (708)
T PF05804_consen 627 DLMHDKNAE-IRKVCDNALDIIAEYDEEWAERIRREKFRWH 666 (708)
T ss_pred HHhcCCCHH-HHHHHHHHHHHHHHhCHHHHHHhhHHHHHHH
Confidence 2232 3333 3344555666777788888888876544443
No 17
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=21.04 E-value=4.9e+02 Score=23.84 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhhhccCchhHHHH-HHHHHHHH
Q 009322 99 DSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSA-LYTFLRLL 177 (537)
Q Consensus 99 d~~r~QLLwL~rElI~~~v~~iD~v~~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~l~~~p~Ll~~~-vytfLRLI 177 (537)
..--..++-++ ++|+.+..+...++-.+-+++..|+ ++-..++=.|+|.+..|=..-+ |.++...- +-...+++
T Consensus 20 ~~Dw~~~l~ic-D~i~~~~~~~kea~~~l~krl~~~~--~~vq~~aL~lld~lvkNcg~~f--~~ev~~~~fl~~l~~l~ 94 (140)
T PF00790_consen 20 SPDWSLILEIC-DLINSSPDGAKEAARALRKRLKHGN--PNVQLLALTLLDALVKNCGPRF--HREVASKEFLDELVKLI 94 (140)
T ss_dssp S--HHHHHHHH-HHHHTSTTHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHSHHHH--HHHHTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHcCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHcCCHHH--HHHHhHHHHHHHHHHHH
Confidence 33344555555 5788877788888888888887744 3446677788999888821001 11111111 12233344
Q ss_pred HhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhHHHHHHHHhh
Q 009322 178 ADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240 (537)
Q Consensus 178 ~DH~~~~~~~~~~~Lrq~Ev~fc~~lir~rf~dC~~IGRDlVRlL~~v~~iPef~~iWkDll~ 240 (537)
.+.... .....|++-.+++.. |.+.| ......+.|.+.|++|..
T Consensus 95 ~~~~~~----~~~~Vk~k~l~ll~~-W~~~f--------------~~~~~~~~i~~~y~~Lk~ 138 (140)
T PF00790_consen 95 KSKKTD----PETPVKEKILELLQE-WAEAF--------------KSDPELSLIQDTYKRLKR 138 (140)
T ss_dssp HHTTTH----HHSHHHHHHHHHHHH-HHHHT--------------TTSTTGHHHHHHHHHHHH
T ss_pred ccCCCC----chhHHHHHHHHHHHH-HHHHH--------------CCCCCchHHHHHHHHHHH
Confidence 443321 112266666655443 44443 355566777777777653
No 18
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.04 E-value=8.4e+02 Score=25.71 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhh
Q 009322 80 ALFVSLLVKVVKELYVKLFDSVKN-QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCL 158 (537)
Q Consensus 80 ~~vi~~L~~li~ekf~kL~d~~r~-QLLwL~rElI~~~v~~iD~v~~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~ 158 (537)
..++.-|...|.+-|.+-.+.+|+ ++|.+...+|+.-...+...+..++-. +.+..++|+.++
T Consensus 66 ~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~------------vf~~Tl~MI~~d---- 129 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA------------VFECTLPMINKD---- 129 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH------------HHHHHHHHHSST----
T ss_pred HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH------------HHHHHHHHHHhh----
Confidence 444555556666778877777764 677877777775333222222222211 346667777766
Q ss_pred hccCchhHHHHHHHHHHHHHhhhcccccchhhHH----HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 009322 159 LEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVL----KCLEIDFCVKMLREQFQLCLKIGRDL 218 (537)
Q Consensus 159 l~~~p~Ll~~~vytfLRLI~DH~~~~~~~~~~~L----rq~Ev~fc~~lir~rf~dC~~IGRDl 218 (537)
++..|. ....+|+++|-+..|+-. .+-.| -+.-++.++|-+++--.+....|=+.
T Consensus 130 ~~~yPe-~r~~ff~LL~~i~~~~f~----~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 130 FEEYPE-HRVNFFKLLRAINEHCFP----ALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp SSSSHH-HHHHHHHHHHHHHHHHTH----HHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred hhhChH-HHHHHHHHHHHHHHHhHH----HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345674 457899999999998742 34333 23456777777776555544444333
Done!