Query 009322
Match_columns 537
No_of_seqs 75 out of 77
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kbc_B INSL5_B-chain; peptide 23.8 27 0.00092 23.4 1.0 12 215-226 8-19 (26)
2 2fhw_B Relaxin 3 (prorelaxin H 22.9 29 0.00098 23.5 1.0 12 215-226 11-22 (27)
3 6rlx_B Relaxin, B-chain; hormo 21.6 34 0.0012 23.3 1.2 12 215-226 11-22 (28)
4 2h8b_B Insulin-like 3; insulin 17.6 43 0.0015 23.3 1.0 13 215-227 11-23 (31)
5 4dhi_B Ubiquitin thioesterase 16.8 3.4E+02 0.012 27.3 7.8 45 120-180 135-179 (284)
6 1upk_A MO25 protein; transfera 16.2 8.9E+02 0.03 24.9 12.5 57 58-115 161-239 (341)
7 3lys_A Prophage PI2 protein 01 15.5 1.9E+02 0.0064 23.0 4.7 37 399-435 57-93 (112)
8 3k8p_D Protein transport prote 15.5 2.9E+02 0.0098 31.3 7.4 78 77-154 371-472 (709)
9 4fdd_A Transportin-1; heat rep 15.1 7.2E+02 0.025 27.0 10.6 172 64-262 606-788 (852)
10 1gxm_A Pectate lyase; mechanis 15.1 29 0.00098 35.9 -0.6 98 313-434 78-184 (332)
No 1
>2kbc_B INSL5_B-chain; peptide hormone, relaxin, insulin-like fold; HET: PCA; NMR {Synthetic}
Probab=23.82 E-value=27 Score=23.44 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=10.4
Q ss_pred hHHHHHHhhhcc
Q 009322 215 GRDLIRLLQDLV 226 (537)
Q Consensus 215 GRDlVRlL~~v~ 226 (537)
||||||....+.
T Consensus 8 Gre~vRa~I~vC 19 (26)
T 2kbc_B 8 GLEYIRTVIYIC 19 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred hhHHHHHHHhhc
Confidence 999999988764
No 2
>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B*
Probab=22.89 E-value=29 Score=23.54 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=10.3
Q ss_pred hHHHHHHhhhcc
Q 009322 215 GRDLIRLLQDLV 226 (537)
Q Consensus 215 GRDlVRlL~~v~ 226 (537)
||||||....+.
T Consensus 11 Gre~vRa~I~vC 22 (27)
T 2fhw_B 11 GREFIRAVIFTC 22 (27)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999988764
No 3
>6rlx_B Relaxin, B-chain; hormone(muscle relaxant); 1.50A {Homo sapiens} SCOP: g.1.1.1
Probab=21.58 E-value=34 Score=23.35 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=10.6
Q ss_pred hHHHHHHhhhcc
Q 009322 215 GRDLIRLLQDLV 226 (537)
Q Consensus 215 GRDlVRlL~~v~ 226 (537)
||||||...++.
T Consensus 11 Gre~vRa~I~vC 22 (28)
T 6rlx_B 11 GRELVRAQIAIC 22 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc
Confidence 999999998775
No 4
>2h8b_B Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_B 2k6u_B
Probab=17.63 E-value=43 Score=23.33 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=11.0
Q ss_pred hHHHHHHhhhccC
Q 009322 215 GRDLIRLLQDLVH 227 (537)
Q Consensus 215 GRDlVRlL~~v~~ 227 (537)
||||||.+..+..
T Consensus 11 Gr~~vRa~I~vCG 23 (31)
T 2h8b_B 11 GHHFVRALVRVCG 23 (31)
T ss_dssp THHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcC
Confidence 9999999887753
No 5
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=16.76 E-value=3.4e+02 Score=27.26 Aligned_cols=45 Identities=16% Similarity=0.298 Sum_probs=32.3
Q ss_pred hhHHHHHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhhhccCchhHHHHHHHHHHHHHhh
Q 009322 120 FDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180 (537)
Q Consensus 120 iD~v~~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~l~~~p~Ll~~~vytfLRLI~DH 180 (537)
+-..++.+++.+..|.- + .+.|++.|.+.. .+..++.|||++..-
T Consensus 135 F~d~f~ell~~i~~~~~---~---~~~L~~~Fnd~~----------~S~~iv~~LRllts~ 179 (284)
T 4dhi_B 135 FCDFFIEFLEKIHSGVH---T---EEAVYTILNDDG----------SANYILMFFRLITSA 179 (284)
T ss_dssp HHHHHHHHHHHHHHTCS---C---HHHHHHHHHSHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---c---HHHHHHHhcCcc----------cchHHHHHHHHHHHH
Confidence 44568889999987752 2 567788888763 345788899988763
No 6
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=16.20 E-value=8.9e+02 Score=24.92 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=35.3
Q ss_pred hcCCCchHHHHHHHHH----HhhccHHHHHHHHHH--------------HHHHHHHhhHH----HHHHHHHHHHHHHHHh
Q 009322 58 LCEPHFAKVHIKHLHA----IVTDGYALFVSLLVK--------------VVKELYVKLFD----SVKNQLIWVTKEMINV 115 (537)
Q Consensus 58 Ltep~~a~~~~r~L~~----i~rDg~~~vi~~L~~--------------li~ekf~kL~d----~~r~QLLwL~rElI~~ 115 (537)
|.++. -.++|++... |+.|.+.++=..|.. -.++.|.+|.. .+|.|-+-|++|++-.
T Consensus 161 L~~~~-f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLld 239 (341)
T 1upk_A 161 LWSEQ-FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLD 239 (341)
T ss_dssp HHSGG-GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHS
T ss_pred hccHH-HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhC
Confidence 33443 3466666554 566666655444432 33455566554 5899999999999864
No 7
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=15.53 E-value=1.9e+02 Score=23.04 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=28.7
Q ss_pred HHHHHHhhhccCCchHHHHHHhHHHHHHHHHHcCCcc
Q 009322 399 LDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQ 435 (537)
Q Consensus 399 LeFL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k~Vv~ 435 (537)
.+|+-.+.+.+-|....++..-++..|+..++.|++.
T Consensus 57 ~~~~~~l~~~~s~~t~~~~~~~l~~i~~~Av~~g~i~ 93 (112)
T 3lys_A 57 QRALNKFAETHAKASTKGFHTRVRASIQCLIEEGRLQ 93 (112)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 3454445556677777889999999999999999885
No 8
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae}
Probab=15.46 E-value=2.9e+02 Score=31.31 Aligned_cols=78 Identities=8% Similarity=0.080 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHHHHHH------HHhhHHHHHHHHH----------HHHHHHHHhccCchhHH--------HHHHHhhhc
Q 009322 77 DGYALFVSLLVKVVKEL------YVKLFDSVKNQLI----------WVTKEMINVSAVGFDGL--------LVSLLRQIV 132 (537)
Q Consensus 77 Dg~~~vi~~L~~li~ek------f~kL~d~~r~QLL----------wL~rElI~~~v~~iD~v--------~~~LLRqi~ 132 (537)
..|...++.|...+.+. |.++.......++ -+++++.......+++. ++.++.+++
T Consensus 371 ~~~~~~l~~~l~~~~~~~~~~~vF~~Ls~~~ie~~iL~~LL~~g~FsLa~~ly~~~~~~ve~~v~dvl~aaF~efyDNAS 450 (709)
T 3k8p_D 371 NEISSFLQAMYETVLDISKDDKIFTRISMDEKLYSILEILLQMNEFAYIEAIIERFDYSNNTQIYELLVKFFWHFFNNAS 450 (709)
T ss_dssp SSHHHHHHHHHHTTTCTTSCCSSSTTSCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHHHhcccccCcccCCHHHHHHHHHHHHHHcCChHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCC
Confidence 34555555555555554 7777766666554 46777776555555554 478899999
Q ss_pred CCCCCCCchhHHHHHHHHHhhh
Q 009322 133 GGDFSDGNLWLCFELVSLFLGK 154 (537)
Q Consensus 133 gGD~s~knv~L~e~lldil~~~ 154 (537)
.|+-+.+.++.|.+++++|..+
T Consensus 451 NgNrtrG~mKkA~ecL~lf~~~ 472 (709)
T 3k8p_D 451 NGLRKEPEMKKASQTLQIIQKH 472 (709)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHhcccc
Confidence 9999999999999999999775
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=15.09 E-value=7.2e+02 Score=26.98 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHhhhcCCCCC
Q 009322 64 AKVHIKHLHAIVTDGYALFV--SLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF----DGLLVSLLRQIVGGDFS 137 (537)
Q Consensus 64 a~~~~r~L~~i~rDg~~~vi--~~L~~li~ekf~kL~d~~r~QLLwL~rElI~~~v~~i----D~v~~~LLRqi~gGD~s 137 (537)
+-..+..+.-...+++.-.+ ..+..++.+.+..=...+|....+++.++++....++ +.++-.+++.+..++++
T Consensus 606 ~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~ 685 (852)
T 4fdd_A 606 ALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFIS 685 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHH
T ss_pred HHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchH
Q ss_pred CCc--hhHHHHHHHHHhhhhhhhhccCchhHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009322 138 DGN--LWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIG 215 (537)
Q Consensus 138 ~kn--v~L~e~lldil~~~~~~~l~~~p~Ll~~~vytfLRLI~DH~~~~~~~~~~~Lrq~Ev~fc~~lir~rf~dC~~IG 215 (537)
.++ +|....+...+-++..- .+..++-..++++.+-..+ -.-+-.-|..||
T Consensus 686 v~~~a~~alg~i~~~~~~~~~p-------~~~~il~~L~~~l~~~~~~--------------------~~~~~~a~~~ig 738 (852)
T 4fdd_A 686 VCNNATWAIGEISIQMGIEMQP-------YIPMVLHQLVEIINRPNTP--------------------KTLLENTAITIG 738 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGG-------GTHHHHHHHHHHHTCSSCC--------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHhHHH-------HHHHHHHHHHHHhCCCCCC--------------------chHHHHHHHHHH
Q ss_pred HHHHHHhhhc-cCchhHHHHHHHHhhCCCCC--CCCCcccchhhhhccCC
Q 009322 216 RDLIRLLQDL-VHVPVFRAIWKDLVLNPSEF--KTPGFSDISQLYHLRTS 262 (537)
Q Consensus 216 RDlVRlL~~v-~~iPef~~iWkDll~nP~~~--~~~~f~~i~qll~~rTs 262 (537)
|=..+.-..| .++++|-..|-..+.+.... +...|.+++.++...+.
T Consensus 739 rl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 739 RLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
No 10
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=15.05 E-value=29 Score=35.85 Aligned_cols=98 Identities=7% Similarity=0.029 Sum_probs=59.9
Q ss_pred hhhhhhhcccCCCchhhhcccchhHHHHHHHHH-hcCChHHHHHhHHHHHHhhhcccCCCCCccccchhHHHHHhhcCCC
Q 009322 313 DIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLK-SCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRY 391 (537)
Q Consensus 313 DlIRfIc~v~hP~Nevl~SdiiPRWavIgWLL~-sc~~~~~~~~aKLALFyDWLffd~~~dniMnIEPaiLlm~~s~~~~ 391 (537)
-.|+|+.-+++++++---.+-+-| =+-|||. +|+++...|.-++. .+|+ +-++-.
T Consensus 78 ~vl~~Larv~~~~~~~~y~~Ai~R--gl~wlL~mQ~~nGGWpqFdpd~--~~Yl--------------------~~IpFn 133 (332)
T 1gxm_A 78 TEMVFLAEVYKSGGNTKYRDAVRK--AANFLVNSQYSTGALPQFYPLK--GGYS--------------------DHATFN 133 (332)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHH--HHHHHHHHCCTTSCCBSEESCC--SGGG--------------------GSEECG
T ss_pred HHHHHHHHHhccccchHHHHHHHH--HHHHHHhccCCCCCccccCCCc--cccc--------------------ccCCcc
Confidence 356777777766543222333334 4578877 66666544422221 2222 223333
Q ss_pred hhHHHHHHHHHHHhhhc--------cCCchHHHHHHhHHHHHHHHHHcCCc
Q 009322 392 IDMTHTLLDFLFLLVDN--------YDVDRKDVIARGVKSAFATLVHKGVV 434 (537)
Q Consensus 392 p~it~sLLeFL~~~v~~--------f~P~~~~~Ir~gV~~af~~i~~k~Vv 434 (537)
-++|...||+|..+... |.+...++.+..|..|+++|++-.+.
T Consensus 134 DDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~ 184 (332)
T 1gxm_A 134 DNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWK 184 (332)
T ss_dssp GGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred hHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCc
Confidence 38999999999998642 55554578888999999999985443
Done!