Query 009322
Match_columns 537
No_of_seqs 75 out of 77
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 23:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009322.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009322hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w6ka1 a.102.4.2 (A:6-99,A:37 20.5 53 0.0039 32.2 5.6 43 389-431 244-286 (448)
2 d2gtsa1 a.25.5.1 (A:4-80) Hypo 17.5 61 0.0044 24.3 3.9 31 75-109 43-73 (77)
3 d1upka_ a.118.1.15 (A:) Mo25 p 14.1 4.7E+02 0.034 24.5 13.2 64 46-114 144-229 (330)
4 d1w9ca_ a.118.1.19 (A:) Export 13.8 3.1E+02 0.022 25.3 9.1 130 81-231 69-204 (321)
5 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 11.8 97 0.0071 22.6 3.8 50 17-69 16-66 (77)
6 d1qbkb_ a.118.1.1 (B:) Karyoph 10.3 7E+02 0.051 24.3 13.3 38 98-135 719-760 (888)
7 d1f7ca_ a.116.1.1 (A:) Graf {C 9.7 4.2E+02 0.031 21.4 10.3 104 59-163 79-190 (191)
8 d1rz4a2 a.118.1.18 (A:2-131) E 9.7 2.4E+02 0.018 23.2 6.0 123 98-243 3-125 (130)
9 g6rlx.1 g.1.1.1 (B:,A:) Relaxi 8.7 57 0.0042 23.1 1.2 13 214-226 10-22 (51)
10 d1sm2a_ d.144.1.7 (A:) Tyrosin 7.8 1.2E+02 0.009 26.1 3.5 39 397-435 86-124 (263)
No 1
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.50 E-value=53 Score=32.16 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHhhhccCCchHHHHHHhHHHHHHHHHHc
Q 009322 389 PRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHK 431 (537)
Q Consensus 389 ~~~p~it~sLLeFL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k 431 (537)
+++|++|.+.|+.|...-..+...+...++..|..|++.|.+.
T Consensus 244 ~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~ 286 (448)
T d1w6ka1 244 YTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 286 (448)
T ss_dssp CCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHcc
Confidence 4799999999999999988888888999999999999999985
No 2
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=17.51 E-value=61 Score=24.32 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=24.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009322 75 VTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVT 109 (537)
Q Consensus 75 ~rDg~~~vi~~L~~li~ekf~kL~d~~r~QLLwL~ 109 (537)
.||-+.-|+.+|+ ..|..+-+.+++||.||-
T Consensus 43 ~rd~fsevldnlk----~tfnefdea~qeqiawlk 73 (77)
T d2gtsa1 43 RRDKFSEVLDNLK----STFNEFDEAAQEQIAWLK 73 (77)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 5677777777775 467778899999999985
No 3
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.06 E-value=4.7e+02 Score=24.49 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHH----HhhccHHHHHHHHH--------------HHHHHHHHhhHH----HHHH
Q 009322 46 YMQLNRAILYGVLCEPHFAKVHIKHLHA----IVTDGYALFVSLLV--------------KVVKELYVKLFD----SVKN 103 (537)
Q Consensus 46 ~e~v~~gLLY~ILtep~~a~~~~r~L~~----i~rDg~~~vi~~L~--------------~li~ekf~kL~d----~~r~ 103 (537)
||.++.-+|| ++ .-.++|++... |+.|.+.++=..|. ...+..|.+|.. .+|.
T Consensus 144 ~e~lak~iL~----s~-~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR 218 (330)
T d1upka_ 144 HEPLAKIILW----SE-QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 218 (330)
T ss_dssp SHHHHHHHHH----SG-GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred hHHHHHHHHc----cH-HHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence 4444444444 33 34666666543 56666655433322 123345555554 4899
Q ss_pred HHHHHHHHHHH
Q 009322 104 QLIWVTKEMIN 114 (537)
Q Consensus 104 QLLwL~rElI~ 114 (537)
|-+-|++|++-
T Consensus 219 qSlKLLgelLl 229 (330)
T d1upka_ 219 QSLKLLGELLL 229 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999994
No 4
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.80 E-value=3.1e+02 Score=25.32 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhhh
Q 009322 81 LFVSLLVKVVKELYVKLFDSVK-NQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLL 159 (537)
Q Consensus 81 ~vi~~L~~li~ekf~kL~d~~r-~QLLwL~rElI~~~v~~iD~v~~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~l 159 (537)
.++.-|...|.+-|.+-.+.+| .++|.+..-+|+.-...+...+...+=. +.+..++|+.++ +
T Consensus 69 ~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~------------VFe~Tl~MI~~d----f 132 (321)
T d1w9ca_ 69 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA------------VFECTLNMINKD----F 132 (321)
T ss_dssp HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH------------HHHHHHHHHSST----T
T ss_pred HHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHH------------HHHHHHHHHhcc----c
Confidence 3444455666777888777777 5788887777764322222222222221 246667787665 4
Q ss_pred ccCchhHHHHHHHHHHHHHhhhcccccchhhHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHH-HhhhccCchhH
Q 009322 160 EEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLK----CLEIDFCVKMLREQFQLCLKIGRDLIR-LLQDLVHVPVF 231 (537)
Q Consensus 160 ~~~p~Ll~~~vytfLRLI~DH~~~~~~~~~~~Lr----q~Ev~fc~~lir~rf~dC~~IGRDlVR-lL~~v~~iPef 231 (537)
++.|. ...-+|+++|-|.-|+-+ ++-.|- +.-++-++|-+++.-.+.+..|=+.+. ++.++.+-+++
T Consensus 133 ~~yPe-hR~~ff~LL~~i~~~cf~----~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~ 204 (321)
T d1w9ca_ 133 EEYPE-HRTNFFLLLQAVNSHCFP----AFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAA 204 (321)
T ss_dssp TCSHH-HHHHHHHHHHHHHHHCTT----HHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hhChH-HHHHHHHHHHHHHHHCHH----HHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHH
Confidence 45674 446799999999999843 333332 335666777777777776666666553 34555554543
No 5
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.78 E-value=97 Score=22.60 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhccCCCccccCC-CchhhhHHHHHHHHHHhcCCCchHHHHH
Q 009322 17 YELSIRQAFDALESKLRPPFALTVP-NPQEYMQLNRAILYGVLCEPHFAKVHIK 69 (537)
Q Consensus 17 lE~~le~~~~~l~~~l~~~~~~~v~-~~~~~e~v~~gLLY~ILtep~~a~~~~r 69 (537)
-.+.++++|..+..++.+. ...-+ ..+.+. .+.--|.||+||...+.|=+
T Consensus 16 s~~eIk~ay~~l~~~~hPD-~~~~~~~~~~~~--~i~~Ay~vLsdp~~R~~YD~ 66 (77)
T d1hdja_ 16 SDEEIKRAYRRQALRYHPD-KNKEPGAEEKFK--EIAEAYDVLSDPRKREIFDR 66 (77)
T ss_dssp CHHHHHHHHHHHHHTTCTT-TCCCTTHHHHHH--HHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-cccchhHHHHHH--HHHHHHHHhcCHHHHHHHHh
Confidence 3456788999888777642 21111 223343 34457999999998766643
No 6
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.28 E-value=7e+02 Score=24.29 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhccC----chhHHHHHHHhhhcCCC
Q 009322 98 FDSVKNQLIWVTKEMINVSAV----GFDGLLVSLLRQIVGGD 135 (537)
Q Consensus 98 ~d~~r~QLLwL~rElI~~~v~----~iD~v~~~LLRqi~gGD 135 (537)
..+++.+.+|.+.|++..... -++.++-.|++.+...+
T Consensus 719 ~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~ 760 (888)
T d1qbkb_ 719 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN 760 (888)
T ss_dssp GHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCC
Confidence 447899999999999876433 45677777777776554
No 7
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.75 E-value=4.2e+02 Score=21.40 Aligned_cols=104 Identities=8% Similarity=0.018 Sum_probs=57.1
Q ss_pred cCCCchHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHhhhc--
Q 009322 59 CEPHFAKVHIKHLHAIVT-DGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINV---SAVGFDGLLVSLLRQIV-- 132 (537)
Q Consensus 59 tep~~a~~~~r~L~~i~r-Dg~~~vi~~L~~li~ekf~kL~d~~r~QLLwL~rElI~~---~v~~iD~v~~~LLRqi~-- 132 (537)
-+|-....+|..+..+.+ .+...-+..+..++ ++.|.-+..+=.-|+-++++..+. |-++..++.+.+--.+.
T Consensus 79 p~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~ 157 (191)
T d1f7ca_ 79 PGPLMMYQFQRSFIKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRP 157 (191)
T ss_dssp SSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHhhchhcCC
Confidence 356666777777776544 33444445554443 334444444444444444444432 33578887766544443
Q ss_pred --CCCCCCCchhHHHHHHHHHhhhhhhhhccCc
Q 009322 133 --GGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163 (537)
Q Consensus 133 --gGD~s~knv~L~e~lldil~~~~~~~l~~~p 163 (537)
++.-.-.++.....++..|++|..++++.-|
T Consensus 158 ~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~p 190 (191)
T d1f7ca_ 158 QEETVAAIMDIKFQNIVIEILIENHEKIFNTVP 190 (191)
T ss_dssp ---CCSGGGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3333333566777888888888776665443
No 8
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.73 E-value=2.4e+02 Score=23.19 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhhhccCchhHHHHHHHHHHHH
Q 009322 98 FDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLL 177 (537)
Q Consensus 98 ~d~~r~QLLwL~rElI~~~v~~iD~v~~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~l~~~p~Ll~~~vytfLRLI 177 (537)
-+..|.+|--++...=|+|..++..+--.+--|+..+..+-. ..| .+|.++.=|... + +..++..++.+-|.-+
T Consensus 3 ~e~~~~~i~~lL~gidRYNPe~l~~Le~YV~~Q~~~~~Ydl~-aNL--alLKLYQfnP~~-~--~~~vi~~ILlKALt~~ 76 (130)
T d1rz4a2 3 FEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLE-ANL--AVLKLYQFNPAF-F--QTTVTAQILLKALTNL 76 (130)
T ss_dssp HHHHHHHHHHHHHSGGGGCGGGHHHHHHHHHHHHHHTCCCHH-HHH--HHHHHHHHSGGG-C--CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHhccccHH-HHH--HHHHHHhcCcCc-C--CHHHHHHHHHHHHHcC
Confidence 456777887788777788888888888888888876654333 112 345565555432 1 3445666665554422
Q ss_pred HhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhHHHHHHHHhhCCC
Q 009322 178 ADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPS 243 (537)
Q Consensus 178 ~DH~~~~~~~~~~~Lrq~Ev~fc~~lir~rf~dC~~IGRDlVRlL~~v~~iPef~~iWkDll~nP~ 243 (537)
+ .....+|..+|-.+-++--.|.+ |..|.++-.-=+|.+.|+.+-.||.
T Consensus 77 P---------------~~DF~lc~~Li~~~~q~~e~i~~--l~~L~~lLE~c~F~~FW~~~~~~~~ 125 (130)
T d1rz4a2 77 P---------------HTDFTLCKCMIDQAHQEERPIRQ--ILYLGDLLETCHFQAFWQALDENMD 125 (130)
T ss_dssp T---------------STHHHHHHHTSCHHHHTSTTHHH--HHHHHHHHHTTCHHHHHHHSCTTCH
T ss_pred C---------------HHHHHHHHHHcChhcCCcHHHHH--HHHHHHHHHhCCHHHHHHHHhhCHH
Confidence 2 22345677777666655444443 2335666667789999999988864
No 9
>g6rlx.1 g.1.1.1 (B:,A:) Relaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69 E-value=57 Score=23.13 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.4
Q ss_pred hhHHHHHHhhhcc
Q 009322 214 IGRDLIRLLQDLV 226 (537)
Q Consensus 214 IGRDlVRlL~~v~ 226 (537)
-||||||+-..+.
T Consensus 10 CGRe~vR~qi~iC 22 (51)
T g6rlx.1 10 CGRELVRAQIAIC 22 (51)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhh
Confidence 3999999877665
No 10
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.84 E-value=1.2e+02 Score=26.15 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhccCCchHHHHHHhHHHHHHHHHHcCCcc
Q 009322 397 TLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQ 435 (537)
Q Consensus 397 sLLeFL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k~Vv~ 435 (537)
+|.+|+..--..+.+...-.|-..|..|++.+-++||+|
T Consensus 86 ~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiH 124 (263)
T d1sm2a_ 86 CLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 124 (263)
T ss_dssp BHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceee
Confidence 455666554444444555678899999999999999996
Done!