Query 009323
Match_columns 537
No_of_seqs 343 out of 3672
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 23:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 6E-113 1E-117 867.6 42.7 451 70-520 1-451 (645)
2 KOG0238 3-Methylcrotonyl-CoA c 100.0 2E-109 4E-114 827.9 39.5 451 74-524 1-452 (670)
3 COG1038 PycA Pyruvate carboxyl 100.0 7.1E-97 2E-101 768.4 45.0 451 69-519 5-463 (1149)
4 COG0439 AccC Biotin carboxylas 100.0 3.6E-93 7.9E-98 736.5 49.0 447 70-516 1-447 (449)
5 PRK08654 pyruvate carboxylase 100.0 3.6E-90 7.8E-95 738.2 55.1 443 70-513 1-443 (499)
6 KOG0369 Pyruvate carboxylase [ 100.0 9.6E-88 2.1E-92 687.2 41.1 448 71-518 33-485 (1176)
7 PRK07178 pyruvate carboxylase 100.0 1.9E-85 4.2E-90 701.8 54.4 446 70-516 1-446 (472)
8 PRK08463 acetyl-CoA carboxylas 100.0 3.1E-85 6.8E-90 700.7 54.6 448 70-518 1-449 (478)
9 PRK12833 acetyl-CoA carboxylas 100.0 8.2E-85 1.8E-89 696.1 54.2 452 69-521 3-455 (467)
10 TIGR01235 pyruv_carbox pyruvat 100.0 2.2E-84 4.7E-89 740.4 51.7 446 73-518 1-456 (1143)
11 PRK05586 biotin carboxylase; V 100.0 3.8E-81 8.2E-86 666.2 52.8 445 70-514 1-445 (447)
12 PRK12999 pyruvate carboxylase; 100.0 1.1E-80 2.4E-85 713.8 55.8 450 69-518 3-460 (1146)
13 TIGR00514 accC acetyl-CoA carb 100.0 2.2E-80 4.9E-85 660.9 54.1 446 70-515 1-446 (449)
14 PRK08462 biotin carboxylase; V 100.0 1.5E-77 3.3E-82 639.1 53.9 443 70-514 3-445 (445)
15 PRK08591 acetyl-CoA carboxylas 100.0 2.6E-77 5.7E-82 638.9 53.8 446 70-515 1-446 (451)
16 TIGR02712 urea_carbox urea car 100.0 1.3E-72 2.7E-77 650.7 54.7 440 71-513 1-443 (1201)
17 PRK06111 acetyl-CoA carboxylas 100.0 1.5E-67 3.3E-72 563.7 54.0 444 70-514 1-444 (450)
18 KOG0368 Acetyl-CoA carboxylase 100.0 2.9E-69 6.3E-74 585.8 36.5 449 65-517 48-554 (2196)
19 TIGR01142 purT phosphoribosylg 100.0 1.2E-44 2.5E-49 379.0 44.1 375 73-482 1-380 (380)
20 PLN02948 phosphoribosylaminoim 100.0 7.4E-45 1.6E-49 394.2 43.7 383 66-481 17-401 (577)
21 TIGR01369 CPSaseII_lrg carbamo 100.0 1.6E-44 3.5E-49 417.5 43.8 412 71-514 6-462 (1050)
22 PRK06019 phosphoribosylaminoim 100.0 8.5E-44 1.8E-48 370.3 42.8 364 71-477 2-366 (372)
23 PLN02735 carbamoyl-phosphate s 100.0 5.5E-44 1.2E-48 411.5 43.7 412 71-514 23-483 (1102)
24 PLN02735 carbamoyl-phosphate s 100.0 6.8E-44 1.5E-48 410.7 40.0 330 71-419 574-932 (1102)
25 PRK09288 purT phosphoribosylgl 100.0 1.7E-42 3.7E-47 364.6 44.4 382 71-483 12-394 (395)
26 PRK07206 hypothetical protein; 100.0 4.3E-42 9.2E-47 363.9 39.9 383 70-476 1-405 (416)
27 PRK05294 carB carbamoyl phosph 100.0 6.1E-42 1.3E-46 397.6 43.1 411 71-513 7-463 (1066)
28 PF02786 CPSase_L_D2: Carbamoy 100.0 5.7E-43 1.2E-47 333.0 25.3 208 184-391 1-209 (211)
29 PRK12815 carB carbamoyl phosph 100.0 2.1E-41 4.5E-46 391.8 42.7 413 70-514 6-464 (1068)
30 TIGR01161 purK phosphoribosyla 100.0 5.3E-41 1.1E-45 347.5 40.1 351 73-464 1-352 (352)
31 PRK02186 argininosuccinate lya 100.0 1.8E-40 3.9E-45 379.3 45.1 380 71-483 2-396 (887)
32 PRK13789 phosphoribosylamine-- 100.0 1.2E-38 2.7E-43 335.4 43.1 390 71-484 4-415 (426)
33 PRK00885 phosphoribosylamine-- 100.0 1.2E-38 2.6E-43 337.6 43.2 387 72-484 1-407 (420)
34 TIGR00877 purD phosphoribosyla 100.0 2.3E-38 4.9E-43 336.0 43.4 389 72-484 1-411 (423)
35 PRK06395 phosphoribosylamine-- 100.0 1E-38 2.2E-43 336.9 39.4 389 70-483 1-410 (435)
36 COG0458 CarB Carbamoylphosphat 100.0 8.7E-39 1.9E-43 319.9 35.8 375 72-478 6-389 (400)
37 COG0027 PurT Formate-dependent 100.0 1.1E-38 2.4E-43 304.0 33.4 380 72-483 13-394 (394)
38 COG0026 PurK Phosphoribosylami 100.0 5.3E-38 1.2E-42 310.5 38.8 367 71-479 1-368 (375)
39 TIGR01369 CPSaseII_lrg carbamo 100.0 2.4E-38 5.3E-43 366.2 41.1 304 71-391 554-870 (1050)
40 PRK12815 carB carbamoyl phosph 100.0 2E-37 4.2E-42 358.8 42.4 363 71-476 555-930 (1068)
41 PLN02257 phosphoribosylamine-- 100.0 9E-37 1.9E-41 321.4 42.8 387 75-484 1-414 (434)
42 PRK05294 carB carbamoyl phosph 100.0 2.3E-37 5E-42 359.4 40.8 365 70-476 553-930 (1066)
43 PRK05784 phosphoribosylamine-- 100.0 2.1E-36 4.6E-41 321.5 41.5 391 72-484 1-435 (486)
44 PRK12767 carbamoyl phosphate s 100.0 1.1E-36 2.4E-41 312.3 34.0 294 71-392 1-299 (326)
45 PRK13790 phosphoribosylamine-- 100.0 3.3E-36 7.1E-41 313.6 36.2 336 128-484 12-365 (379)
46 COG0151 PurD Phosphoribosylami 100.0 7.1E-32 1.5E-36 270.7 39.2 390 72-484 1-412 (428)
47 PRK14569 D-alanyl-alanine synt 100.0 1.1E-32 2.4E-37 278.1 31.8 273 71-385 3-292 (296)
48 PRK01966 ddl D-alanyl-alanine 100.0 6.1E-33 1.3E-37 284.6 27.5 299 70-384 2-327 (333)
49 PRK06524 biotin carboxylase-li 100.0 3.4E-32 7.3E-37 283.5 30.3 252 133-396 94-361 (493)
50 PRK01372 ddl D-alanine--D-alan 100.0 6.6E-32 1.4E-36 274.1 31.5 277 69-384 2-296 (304)
51 PF15632 ATPgrasp_Ter: ATP-gra 100.0 1.2E-31 2.5E-36 269.0 31.1 295 75-393 2-311 (329)
52 PRK06849 hypothetical protein; 100.0 2.4E-32 5.2E-37 286.6 26.7 279 71-370 4-284 (389)
53 PRK14568 vanB D-alanine--D-lac 100.0 1.4E-31 3.1E-36 275.6 28.3 295 71-383 3-335 (343)
54 TIGR01205 D_ala_D_alaTIGR D-al 100.0 2.9E-31 6.2E-36 270.8 29.8 274 83-385 20-312 (315)
55 PRK14572 D-alanyl-alanine synt 100.0 1.3E-30 2.7E-35 268.8 30.9 302 72-384 2-341 (347)
56 PRK14570 D-alanyl-alanine synt 100.0 1.3E-30 2.8E-35 269.0 29.8 306 70-386 1-347 (364)
57 PRK14571 D-alanyl-alanine synt 100.0 5.9E-29 1.3E-33 251.8 30.8 270 73-386 2-296 (299)
58 PRK14573 bifunctional D-alanyl 100.0 3.2E-28 6.9E-33 276.9 32.3 298 71-383 451-781 (809)
59 PF02785 Biotin_carb_C: Biotin 100.0 1.9E-30 4E-35 218.0 8.2 107 405-511 1-107 (107)
60 COG2232 Predicted ATP-dependen 100.0 1.4E-27 3E-32 229.9 26.9 349 71-478 11-371 (389)
61 KOG0370 Multifunctional pyrimi 100.0 4.8E-29 1E-33 264.6 13.1 383 69-485 375-776 (1435)
62 smart00878 Biotin_carb_C Bioti 100.0 5.6E-29 1.2E-33 209.5 10.6 107 405-511 1-107 (107)
63 KOG0237 Glycinamide ribonucleo 99.9 4.3E-25 9.4E-30 225.6 33.3 396 71-490 2-424 (788)
64 PRK10446 ribosomal protein S6 99.9 9.8E-26 2.1E-30 228.2 28.0 276 73-388 2-289 (300)
65 KOG0370 Multifunctional pyrimi 99.9 3.4E-26 7.4E-31 243.1 24.9 306 71-394 918-1237(1435)
66 PRK13278 purP 5-formaminoimida 99.9 2.1E-25 4.5E-30 227.4 29.3 267 73-365 20-315 (358)
67 TIGR00768 rimK_fam alpha-L-glu 99.9 1.9E-25 4.1E-30 223.5 28.3 266 79-384 9-276 (277)
68 PF13535 ATP-grasp_4: ATP-gras 99.9 1.8E-26 4E-31 216.2 19.6 177 181-366 1-183 (184)
69 PRK13277 5-formaminoimidazole- 99.9 1.6E-24 3.5E-29 217.1 28.3 294 73-391 19-349 (366)
70 TIGR02144 LysX_arch Lysine bio 99.9 1.8E-24 3.9E-29 217.0 27.8 264 82-386 11-276 (280)
71 COG1181 DdlA D-alanine-D-alani 99.9 3.6E-23 7.8E-28 208.1 26.8 280 72-384 3-312 (317)
72 PF02222 ATP-grasp: ATP-grasp 99.9 1.2E-23 2.6E-28 193.3 19.8 167 192-370 1-169 (172)
73 PF07478 Dala_Dala_lig_C: D-al 99.9 2E-22 4.3E-27 191.5 21.4 186 191-384 1-201 (203)
74 PF00289 CPSase_L_chain: Carba 99.9 1.2E-23 2.6E-28 178.8 10.3 110 70-179 1-110 (110)
75 TIGR03103 trio_acet_GNAT GNAT- 99.9 4.9E-23 1.1E-27 223.1 15.6 266 87-385 204-540 (547)
76 PRK14016 cyanophycin synthetas 99.9 9.9E-21 2.1E-25 211.6 24.7 254 103-386 141-472 (727)
77 COG0189 RimK Glutathione synth 99.9 3E-20 6.6E-25 187.4 24.1 286 81-385 17-311 (318)
78 PF01071 GARS_A: Phosphoribosy 99.9 9.3E-21 2E-25 175.8 18.3 174 183-363 1-190 (194)
79 COG3919 Predicted ATP-grasp en 99.8 7.2E-20 1.6E-24 174.1 18.0 296 73-389 5-314 (415)
80 PF02655 ATP-grasp_3: ATP-gras 99.8 5.5E-21 1.2E-25 175.5 9.8 157 182-365 1-161 (161)
81 PF08443 RimK: RimK-like ATP-g 99.8 1.7E-19 3.6E-24 170.4 15.8 183 182-384 1-189 (190)
82 PRK12458 glutathione synthetas 99.8 5.6E-17 1.2E-21 166.1 22.7 278 79-386 9-322 (338)
83 COG1821 Predicted ATP-utilizin 99.7 1.1E-16 2.4E-21 149.7 18.0 194 158-390 89-284 (307)
84 TIGR01380 glut_syn glutathione 99.7 2.6E-15 5.6E-20 152.6 24.3 273 82-385 19-308 (312)
85 PRK05246 glutathione synthetas 99.7 2.4E-15 5.3E-20 153.3 23.8 274 82-386 20-310 (316)
86 TIGR02068 cya_phycin_syn cyano 99.7 1.1E-15 2.3E-20 174.5 23.1 241 131-386 160-471 (864)
87 PRK02471 bifunctional glutamat 99.7 2.5E-15 5.5E-20 167.7 22.6 198 174-384 478-749 (752)
88 TIGR01435 glu_cys_lig_rel glut 99.7 2.8E-15 6.2E-20 164.8 21.7 198 174-384 465-735 (737)
89 COG1759 5-formaminoimidazole-4 99.7 3.9E-14 8.5E-19 136.9 25.0 273 73-369 20-322 (361)
90 PLN02941 inositol-tetrakisphos 99.7 2.2E-14 4.7E-19 144.7 23.1 226 83-363 38-305 (328)
91 TIGR02291 rimK_rel_E_lig alpha 99.5 3.9E-13 8.4E-18 134.7 19.9 205 173-384 26-291 (317)
92 PF14398 ATPgrasp_YheCD: YheC/ 99.2 7.5E-10 1.6E-14 109.6 17.7 185 164-364 4-235 (262)
93 TIGR01016 sucCoAbeta succinyl- 99.1 3.2E-09 6.9E-14 111.4 20.1 174 184-359 4-215 (386)
94 PRK00696 sucC succinyl-CoA syn 99.1 3.1E-09 6.7E-14 111.5 19.4 109 184-294 4-125 (388)
95 PF14397 ATPgrasp_ST: Sugar-tr 99.1 9.6E-09 2.1E-13 102.9 19.8 197 174-378 16-273 (285)
96 PF13549 ATP-grasp_5: ATP-gras 98.8 3.7E-08 8.1E-13 94.5 12.3 174 183-362 10-207 (222)
97 COG0045 SucC Succinyl-CoA synt 98.8 4.6E-08 9.9E-13 98.5 12.3 107 185-293 5-121 (387)
98 PF08442 ATP-grasp_2: ATP-gras 98.7 3.6E-08 7.8E-13 93.2 8.2 103 185-289 4-118 (202)
99 PRK14046 malate--CoA ligase su 98.6 3E-06 6.5E-11 88.7 19.5 108 185-294 5-125 (392)
100 PF02955 GSH-S_ATP: Prokaryoti 98.6 2.2E-07 4.7E-12 85.6 9.5 145 199-364 12-164 (173)
101 PLN00124 succinyl-CoA ligase [ 98.5 4.9E-06 1.1E-10 87.3 17.9 105 184-291 31-158 (422)
102 PLN02235 ATP citrate (pro-S)-l 98.4 2.4E-05 5.1E-10 81.3 18.0 107 185-293 8-132 (423)
103 PF02750 Synapsin_C: Synapsin, 98.2 5.7E-05 1.2E-09 69.4 14.0 167 174-361 1-177 (203)
104 PF14305 ATPgrasp_TupA: TupA-l 98.2 8.2E-05 1.8E-09 72.6 16.2 179 177-365 13-221 (239)
105 PF05770 Ins134_P3_kin: Inosit 98.2 1.6E-05 3.6E-10 79.6 11.5 174 168-363 78-290 (307)
106 PF02844 GARS_N: Phosphoribosy 98.0 4.1E-05 8.9E-10 63.5 9.5 94 72-181 1-99 (100)
107 PF03133 TTL: Tubulin-tyrosine 97.6 0.00036 7.8E-09 70.4 10.5 55 223-286 67-128 (292)
108 PF06849 DUF1246: Protein of u 97.5 0.00014 3E-09 61.9 5.2 113 80-202 6-122 (124)
109 KOG3895 Synaptic vesicle prote 97.5 0.00055 1.2E-08 67.8 9.0 196 140-360 152-365 (488)
110 PF06973 DUF1297: Domain of un 97.5 0.0013 2.9E-08 59.9 10.7 102 264-367 21-147 (188)
111 PF14403 CP_ATPgrasp_2: Circul 97.0 0.0064 1.4E-07 64.1 11.7 174 71-275 185-386 (445)
112 PF14243 DUF4343: Domain of un 96.5 0.044 9.5E-07 48.2 11.6 114 222-362 2-116 (130)
113 PF11379 DUF3182: Protein of u 96.2 0.054 1.2E-06 54.3 11.1 149 137-298 59-209 (355)
114 PRK08057 cobalt-precorrin-6x r 95.9 0.084 1.8E-06 51.8 11.3 94 70-172 1-96 (248)
115 TIGR00715 precor6x_red precorr 95.9 0.068 1.5E-06 52.7 10.5 94 72-172 1-96 (256)
116 COG1064 AdhP Zn-dependent alco 95.7 0.067 1.5E-06 54.5 10.0 159 68-255 164-326 (339)
117 COG2099 CobK Precorrin-6x redu 95.6 0.16 3.5E-06 49.1 11.6 123 71-221 2-128 (257)
118 PF13380 CoA_binding_2: CoA bi 95.6 0.12 2.7E-06 44.4 9.8 99 72-178 1-112 (116)
119 COG1748 LYS9 Saccharopine dehy 95.3 0.074 1.6E-06 55.3 8.9 118 71-202 1-122 (389)
120 PF02571 CbiJ: Precorrin-6x re 95.2 0.19 4.2E-06 49.3 11.0 94 72-172 1-97 (249)
121 COG0569 TrkA K+ transport syst 94.9 0.098 2.1E-06 50.6 7.9 133 72-225 1-137 (225)
122 CHL00194 ycf39 Ycf39; Provisio 94.9 0.27 5.8E-06 50.1 11.6 70 72-150 1-71 (317)
123 PRK05849 hypothetical protein; 94.5 2.1 4.7E-05 48.8 18.3 175 181-358 7-212 (783)
124 PLN00016 RNA-binding protein; 93.9 0.4 8.6E-06 50.2 10.6 101 65-175 46-164 (378)
125 KOG2157 Predicted tubulin-tyro 93.7 0.38 8.3E-06 51.6 9.8 52 221-274 199-251 (497)
126 PRK03659 glutathione-regulated 93.4 0.093 2E-06 58.5 4.9 138 71-223 400-537 (601)
127 TIGR02964 xanthine_xdhC xanthi 93.2 0.63 1.4E-05 45.6 9.9 35 71-105 100-134 (246)
128 PF05368 NmrA: NmrA-like famil 92.9 0.74 1.6E-05 44.4 9.9 117 74-199 1-137 (233)
129 KOG2156 Tubulin-tyrosine ligas 92.9 0.84 1.8E-05 48.3 10.4 64 197-274 280-344 (662)
130 COG1087 GalE UDP-glucose 4-epi 92.9 0.55 1.2E-05 46.8 8.7 71 72-149 1-73 (329)
131 COG2910 Putative NADH-flavin r 92.7 0.71 1.5E-05 42.7 8.5 72 72-154 1-73 (211)
132 KOG2799 Succinyl-CoA synthetas 92.5 0.56 1.2E-05 47.4 8.3 71 183-255 25-107 (434)
133 PF07065 D123: D123; InterPro 92.3 3.8 8.2E-05 41.4 14.1 141 211-363 75-240 (299)
134 PRK03562 glutathione-regulated 92.2 0.2 4.4E-06 56.0 5.4 137 71-223 400-537 (621)
135 PLN02819 lysine-ketoglutarate 92.0 1 2.2E-05 53.0 10.9 162 71-250 569-763 (1042)
136 PF02254 TrkA_N: TrkA-N domain 91.9 0.13 2.9E-06 43.7 2.9 111 74-198 1-111 (116)
137 TIGR01470 cysG_Nterm siroheme 91.8 0.6 1.3E-05 44.5 7.4 33 71-103 9-41 (205)
138 PRK04148 hypothetical protein; 91.4 0.45 9.7E-06 41.9 5.6 74 71-150 17-109 (134)
139 PRK10669 putative cation:proto 91.4 0.44 9.6E-06 52.7 7.0 134 71-223 417-550 (558)
140 PF01820 Dala_Dala_lig_N: D-al 91.1 0.47 1E-05 40.9 5.4 88 83-174 21-117 (117)
141 PRK06988 putative formyltransf 90.9 0.84 1.8E-05 46.5 7.9 38 70-107 1-38 (312)
142 PF04321 RmlD_sub_bind: RmlD s 90.6 0.82 1.8E-05 45.9 7.5 59 72-152 1-60 (286)
143 PRK06718 precorrin-2 dehydroge 90.6 1.1 2.4E-05 42.6 7.9 31 71-101 10-40 (202)
144 PLN02657 3,8-divinyl protochlo 90.5 2.9 6.4E-05 43.9 11.9 74 71-151 60-144 (390)
145 PF13478 XdhC_C: XdhC Rossmann 90.0 0.71 1.5E-05 40.9 5.7 85 74-173 1-85 (136)
146 PF13460 NAD_binding_10: NADH( 90.0 1.7 3.6E-05 40.0 8.6 67 74-152 1-69 (183)
147 PRK06719 precorrin-2 dehydroge 89.7 1.8 4E-05 39.3 8.3 31 71-101 13-43 (157)
148 KOG1198 Zinc-binding oxidoredu 89.2 2.9 6.4E-05 43.2 10.3 74 68-152 155-234 (347)
149 PF00070 Pyr_redox: Pyridine n 89.1 0.87 1.9E-05 36.0 5.1 59 73-148 1-59 (80)
150 PRK13303 L-aspartate dehydroge 89.1 2.7 5.8E-05 41.7 9.7 113 72-198 2-115 (265)
151 PLN02695 GDP-D-mannose-3',5'-e 88.6 2 4.2E-05 44.9 8.8 71 71-150 21-92 (370)
152 PRK10537 voltage-gated potassi 88.5 1.4 3E-05 46.4 7.5 113 71-199 240-352 (393)
153 PRK13302 putative L-aspartate 88.1 2.6 5.7E-05 41.9 8.9 114 68-198 3-118 (271)
154 PRK05993 short chain dehydroge 88.1 2 4.4E-05 42.6 8.2 35 70-104 3-38 (277)
155 PRK12825 fabG 3-ketoacyl-(acyl 88.1 2.1 4.6E-05 41.1 8.2 35 68-102 3-38 (249)
156 PLN02572 UDP-sulfoquinovose sy 88.1 4.7 0.0001 43.2 11.5 33 69-101 45-78 (442)
157 PF13241 NAD_binding_7: Putati 88.1 0.49 1.1E-05 39.7 3.1 82 71-171 7-88 (103)
158 PRK05693 short chain dehydroge 88.1 1.7 3.8E-05 42.9 7.7 75 71-152 1-81 (274)
159 KOG1057 Arp2/3 complex-interac 88.0 2.6 5.7E-05 46.7 9.1 202 144-361 91-322 (1018)
160 COG1832 Predicted CoA-binding 87.9 1.2 2.7E-05 38.9 5.5 97 71-172 16-124 (140)
161 cd03466 Nitrogenase_NifN_2 Nit 87.8 3.5 7.6E-05 44.0 10.2 89 70-172 299-394 (429)
162 COG0702 Predicted nucleoside-d 87.8 11 0.00023 36.9 13.1 164 72-253 1-186 (275)
163 KOG1447 GTP-specific succinyl- 87.6 4 8.7E-05 39.7 9.2 107 185-293 24-151 (412)
164 PRK09496 trkA potassium transp 87.4 1.6 3.6E-05 46.7 7.5 75 71-152 231-306 (453)
165 COG0300 DltE Short-chain dehyd 87.2 1.5 3.3E-05 43.3 6.4 84 68-153 3-94 (265)
166 COG0771 MurD UDP-N-acetylmuram 87.1 3.8 8.2E-05 43.7 9.7 90 70-173 6-98 (448)
167 PRK08177 short chain dehydroge 87.1 2.2 4.8E-05 40.7 7.6 75 71-152 1-80 (225)
168 PLN03209 translocon at the inn 86.8 4.8 0.0001 44.3 10.6 39 67-105 76-115 (576)
169 PRK12446 undecaprenyldiphospho 86.8 3.1 6.8E-05 43.1 9.0 101 71-173 1-119 (352)
170 PRK01368 murD UDP-N-acetylmura 86.7 8.1 0.00017 41.6 12.3 93 69-178 4-96 (454)
171 PRK12826 3-ketoacyl-(acyl-carr 86.6 2.5 5.4E-05 40.8 7.7 35 69-103 4-39 (251)
172 PF01113 DapB_N: Dihydrodipico 86.4 2.5 5.4E-05 36.7 6.7 30 72-101 1-32 (124)
173 TIGR01285 nifN nitrogenase mol 86.4 4 8.8E-05 43.6 9.7 85 71-172 311-395 (432)
174 PRK08017 oxidoreductase; Provi 86.2 3.5 7.6E-05 40.0 8.6 35 70-104 1-36 (256)
175 cd01075 NAD_bind_Leu_Phe_Val_D 85.9 2.7 5.9E-05 39.8 7.2 109 71-202 28-138 (200)
176 TIGR03025 EPS_sugtrans exopoly 85.7 4.7 0.0001 43.2 9.9 89 71-171 125-218 (445)
177 PF01370 Epimerase: NAD depend 85.6 3 6.6E-05 39.7 7.7 72 74-152 1-74 (236)
178 PRK06182 short chain dehydroge 85.4 3.1 6.8E-05 41.0 7.9 76 71-153 3-84 (273)
179 PRK10217 dTDP-glucose 4,6-dehy 85.4 4.3 9.2E-05 41.8 9.1 75 71-152 1-83 (355)
180 cd04728 ThiG Thiazole synthase 85.2 11 0.00023 36.8 10.8 121 129-262 106-232 (248)
181 PRK09424 pntA NAD(P) transhydr 85.2 3.3 7.2E-05 45.0 8.3 53 68-120 162-214 (509)
182 PF03435 Saccharop_dh: Sacchar 84.9 3 6.4E-05 43.8 7.8 115 74-202 1-121 (386)
183 TIGR03466 HpnA hopanoid-associ 84.9 3.5 7.6E-05 41.6 8.1 69 72-149 1-70 (328)
184 TIGR03649 ergot_EASG ergot alk 84.5 7.3 0.00016 38.7 10.1 67 73-149 1-73 (285)
185 PRK06057 short chain dehydroge 84.4 4.4 9.5E-05 39.5 8.3 77 69-152 5-88 (255)
186 TIGR00518 alaDH alanine dehydr 84.3 2.5 5.4E-05 44.1 6.8 71 71-150 167-237 (370)
187 PRK07577 short chain dehydroge 84.2 7.4 0.00016 37.1 9.7 70 71-152 3-77 (234)
188 PRK05653 fabG 3-ketoacyl-(acyl 84.2 3.9 8.5E-05 39.1 7.8 35 70-104 4-39 (246)
189 PRK06483 dihydromonapterin red 84.2 5.7 0.00012 38.1 8.9 35 70-104 1-36 (236)
190 TIGR02622 CDP_4_6_dhtase CDP-g 84.0 5.5 0.00012 41.0 9.2 76 71-151 4-83 (349)
191 PRK08267 short chain dehydroge 84.0 3.8 8.3E-05 39.9 7.7 34 71-104 1-35 (260)
192 PRK12742 oxidoreductase; Provi 83.9 5.3 0.00012 38.2 8.6 78 68-152 3-84 (237)
193 PRK12829 short chain dehydroge 83.7 3.2 6.8E-05 40.5 7.0 77 69-152 9-95 (264)
194 PRK06398 aldose dehydrogenase; 83.7 9.3 0.0002 37.3 10.3 33 71-103 6-39 (258)
195 PRK12475 thiamine/molybdopteri 83.7 5.2 0.00011 41.2 8.7 122 71-202 24-147 (338)
196 PRK07326 short chain dehydroge 83.7 3.4 7.3E-05 39.6 7.0 33 71-103 6-39 (237)
197 PRK05472 redox-sensing transcr 83.5 9.1 0.0002 36.5 9.8 89 71-172 84-174 (213)
198 PRK09496 trkA potassium transp 83.5 2.9 6.3E-05 44.7 7.1 34 72-105 1-34 (453)
199 PRK08219 short chain dehydroge 83.3 3 6.5E-05 39.5 6.5 75 70-152 2-80 (227)
200 PRK00141 murD UDP-N-acetylmura 83.1 5.7 0.00012 43.0 9.2 86 71-173 15-103 (473)
201 PLN02240 UDP-glucose 4-epimera 83.1 6.2 0.00013 40.4 9.1 75 70-151 4-89 (352)
202 PRK13394 3-hydroxybutyrate deh 83.1 3.8 8.2E-05 39.9 7.2 36 69-104 5-41 (262)
203 PLN02653 GDP-mannose 4,6-dehyd 83.0 6.7 0.00015 40.1 9.3 73 71-150 6-90 (340)
204 COG2102 Predicted ATPases of P 83.0 45 0.00098 31.9 13.9 140 72-229 2-143 (223)
205 PRK10124 putative UDP-glucose 82.9 5.6 0.00012 42.9 9.0 86 71-171 143-233 (463)
206 PRK08264 short chain dehydroge 82.8 9.1 0.0002 36.6 9.7 73 71-153 6-83 (238)
207 cd01483 E1_enzyme_family Super 82.7 6.2 0.00013 34.9 7.8 28 73-100 1-29 (143)
208 PRK05562 precorrin-2 dehydroge 82.7 5.2 0.00011 38.5 7.7 33 71-103 25-57 (223)
209 PF02639 DUF188: Uncharacteriz 82.7 31 0.00067 30.2 11.9 100 86-199 2-106 (130)
210 TIGR03023 WcaJ_sugtrans Undeca 82.6 7.2 0.00016 41.9 9.7 88 71-170 128-220 (451)
211 PRK07231 fabG 3-ketoacyl-(acyl 82.6 5 0.00011 38.7 7.8 76 71-153 5-91 (251)
212 TIGR02355 moeB molybdopterin s 82.5 13 0.00028 36.3 10.6 31 71-101 24-54 (240)
213 PRK00208 thiG thiazole synthas 82.5 14 0.00031 36.0 10.4 121 129-262 106-232 (250)
214 cd01976 Nitrogenase_MoFe_alpha 82.5 3.7 8E-05 43.7 7.3 89 70-172 299-391 (421)
215 COG0289 DapB Dihydrodipicolina 82.4 21 0.00046 35.1 11.7 109 71-186 2-136 (266)
216 PRK12828 short chain dehydroge 82.4 5.6 0.00012 37.9 8.0 34 71-104 7-41 (239)
217 cd01965 Nitrogenase_MoFe_beta_ 82.3 4.8 0.00011 42.9 8.1 86 71-172 299-393 (428)
218 PRK01438 murD UDP-N-acetylmura 82.2 4.4 9.4E-05 43.9 7.9 92 71-178 16-111 (480)
219 cd08239 THR_DH_like L-threonin 82.0 4.3 9.2E-05 41.4 7.4 98 70-174 163-263 (339)
220 TIGR01472 gmd GDP-mannose 4,6- 82.0 6.6 0.00014 40.2 8.8 72 72-150 1-85 (343)
221 PRK06194 hypothetical protein; 82.0 6 0.00013 39.2 8.3 34 70-103 5-39 (287)
222 PRK05565 fabG 3-ketoacyl-(acyl 82.0 4.2 9.2E-05 39.0 7.0 34 70-103 4-39 (247)
223 PRK09987 dTDP-4-dehydrorhamnos 81.9 4.5 9.8E-05 40.7 7.4 60 72-150 1-61 (299)
224 TIGR01283 nifE nitrogenase mol 81.8 7.2 0.00016 42.0 9.3 88 71-172 326-417 (456)
225 CHL00162 thiG thiamin biosynth 81.8 46 0.001 32.6 13.6 118 131-261 122-245 (267)
226 PF13727 CoA_binding_3: CoA-bi 81.6 5.4 0.00012 36.1 7.2 89 72-171 78-171 (175)
227 PRK07454 short chain dehydroge 81.6 4.7 0.0001 38.8 7.2 35 70-104 5-40 (241)
228 PRK07236 hypothetical protein; 81.2 3 6.5E-05 43.6 6.0 34 69-102 4-37 (386)
229 PRK14573 bifunctional D-alanyl 81.0 14 0.00031 42.8 12.0 91 71-179 4-97 (809)
230 PRK10675 UDP-galactose-4-epime 81.0 8.1 0.00018 39.3 9.0 72 72-150 1-80 (338)
231 cd01080 NAD_bind_m-THF_DH_Cycl 81.0 2.9 6.3E-05 38.5 5.1 33 71-103 44-77 (168)
232 COG1648 CysG Siroheme synthase 80.9 3.9 8.4E-05 39.1 6.1 32 71-102 12-43 (210)
233 TIGR02717 AcCoA-syn-alpha acet 80.9 14 0.0003 39.6 11.0 109 71-185 7-138 (447)
234 PRK05865 hypothetical protein; 80.8 20 0.00043 41.6 12.7 110 72-199 1-120 (854)
235 PRK07806 short chain dehydroge 80.8 7.9 0.00017 37.3 8.5 35 69-103 4-39 (248)
236 PRK11908 NAD-dependent epimera 80.8 5.4 0.00012 40.9 7.7 31 72-102 2-34 (347)
237 PRK08265 short chain dehydroge 80.7 8.2 0.00018 37.8 8.6 34 71-104 6-40 (261)
238 PRK06180 short chain dehydroge 80.6 6.4 0.00014 38.9 7.9 34 71-104 4-38 (277)
239 cd05211 NAD_bind_Glu_Leu_Phe_V 80.6 3.1 6.8E-05 39.9 5.4 33 69-101 21-53 (217)
240 PRK04690 murD UDP-N-acetylmura 80.4 12 0.00025 40.5 10.3 93 71-178 8-102 (468)
241 PRK06953 short chain dehydroge 80.3 7.4 0.00016 36.9 8.0 34 71-104 1-35 (222)
242 PRK12939 short chain dehydroge 80.2 7.6 0.00016 37.4 8.2 33 71-103 7-40 (250)
243 PRK06464 phosphoenolpyruvate s 80.1 75 0.0016 36.8 17.1 42 315-358 288-330 (795)
244 COG0287 TyrA Prephenate dehydr 80.1 14 0.00031 36.9 10.0 36 70-105 2-37 (279)
245 PRK06138 short chain dehydroge 80.0 6.2 0.00014 38.1 7.5 34 71-104 5-39 (252)
246 PRK14106 murD UDP-N-acetylmura 80.0 4.3 9.4E-05 43.4 6.9 87 71-172 5-96 (450)
247 PRK05678 succinyl-CoA syntheta 79.9 15 0.00033 36.9 10.2 109 71-185 8-133 (291)
248 PRK00421 murC UDP-N-acetylmura 79.9 8 0.00017 41.6 8.9 93 71-179 7-100 (461)
249 PLN02686 cinnamoyl-CoA reducta 79.9 7.6 0.00017 40.4 8.5 36 66-101 48-84 (367)
250 PF01488 Shikimate_DH: Shikima 79.9 3.8 8.3E-05 36.0 5.3 32 70-101 11-43 (135)
251 TIGR01214 rmlD dTDP-4-dehydror 79.9 5.7 0.00012 39.3 7.3 57 73-151 1-58 (287)
252 PRK08643 acetoin reductase; Va 79.8 6.6 0.00014 38.1 7.6 35 70-104 1-36 (256)
253 PRK00048 dihydrodipicolinate r 79.8 21 0.00046 35.1 11.2 85 72-172 2-88 (257)
254 TIGR03451 mycoS_dep_FDH mycoth 79.8 6.3 0.00014 40.7 7.8 98 70-173 176-276 (358)
255 TIGR02263 benz_CoA_red_C benzo 79.8 6 0.00013 41.5 7.6 79 71-149 233-327 (380)
256 PRK12824 acetoacetyl-CoA reduc 79.7 8.4 0.00018 36.9 8.3 35 70-104 1-36 (245)
257 COG0223 Fmt Methionyl-tRNA for 79.7 3.4 7.3E-05 41.7 5.4 37 71-107 1-37 (307)
258 PRK07856 short chain dehydroge 79.7 12 0.00027 36.1 9.5 34 71-104 6-40 (252)
259 TIGR02356 adenyl_thiF thiazole 79.6 11 0.00024 35.6 8.8 31 71-101 21-52 (202)
260 PRK07688 thiamine/molybdopteri 79.5 5.3 0.00011 41.2 7.0 32 71-102 24-56 (339)
261 TIGR01861 ANFD nitrogenase iro 79.4 8 0.00017 42.2 8.6 89 70-172 327-420 (513)
262 PRK12429 3-hydroxybutyrate deh 79.4 6.6 0.00014 38.0 7.4 35 71-105 4-39 (258)
263 PRK05878 pyruvate phosphate di 79.3 60 0.0013 35.6 15.2 38 318-358 257-294 (530)
264 PRK00726 murG undecaprenyldiph 79.1 9.6 0.00021 39.1 8.9 99 72-172 2-118 (357)
265 PRK07074 short chain dehydroge 79.0 7.9 0.00017 37.6 7.9 34 70-103 1-35 (257)
266 PF13477 Glyco_trans_4_2: Glyc 79.0 7 0.00015 33.9 6.8 79 73-151 1-82 (139)
267 PRK12743 oxidoreductase; Provi 79.0 9.8 0.00021 37.0 8.5 33 70-102 1-34 (256)
268 PRK06500 short chain dehydroge 79.0 6.6 0.00014 37.8 7.3 35 69-103 4-39 (249)
269 PRK12745 3-ketoacyl-(acyl-carr 79.0 11 0.00025 36.3 9.0 34 70-103 1-35 (256)
270 PRK08226 short chain dehydroge 78.9 7.9 0.00017 37.7 7.9 35 69-103 4-39 (263)
271 PRK09135 pteridine reductase; 78.9 9.3 0.0002 36.6 8.3 32 71-102 6-38 (249)
272 PRK06179 short chain dehydroge 78.9 12 0.00025 36.8 9.1 74 71-153 4-83 (270)
273 TIGR02049 gshA_ferroox glutama 78.8 8.1 0.00018 39.6 7.7 51 224-274 260-313 (403)
274 TIGR01278 DPOR_BchB light-inde 78.8 11 0.00023 41.3 9.4 70 71-149 295-370 (511)
275 PRK00124 hypothetical protein; 78.6 50 0.0011 29.7 13.6 114 73-199 2-122 (151)
276 PRK07774 short chain dehydroge 78.5 9.4 0.0002 36.8 8.2 33 71-103 6-39 (250)
277 PF01408 GFO_IDH_MocA: Oxidore 78.4 8.5 0.00018 32.5 7.0 87 73-172 2-90 (120)
278 PRK12827 short chain dehydroge 78.4 17 0.00038 34.7 10.1 33 70-102 5-38 (249)
279 PLN00198 anthocyanidin reducta 78.3 11 0.00024 38.5 9.0 34 71-104 9-43 (338)
280 PLN02775 Probable dihydrodipic 78.2 25 0.00055 35.1 11.0 71 72-148 12-84 (286)
281 PRK07024 short chain dehydroge 78.1 7.6 0.00016 37.8 7.5 35 70-104 1-36 (257)
282 PRK07666 fabG 3-ketoacyl-(acyl 78.0 8.4 0.00018 36.9 7.7 34 71-104 7-41 (239)
283 TIGR03022 WbaP_sugtrans Undeca 78.0 12 0.00026 40.2 9.5 69 71-151 125-196 (456)
284 PRK01710 murD UDP-N-acetylmura 77.9 17 0.00036 39.1 10.6 89 71-173 14-106 (458)
285 COG1091 RfbD dTDP-4-dehydrorha 77.9 9.5 0.00021 38.1 7.9 56 73-151 2-58 (281)
286 COG0063 Predicted sugar kinase 77.8 38 0.00082 34.0 12.2 143 71-227 32-196 (284)
287 PRK06200 2,3-dihydroxy-2,3-dih 77.8 8.4 0.00018 37.6 7.7 34 70-103 5-39 (263)
288 PRK07063 short chain dehydroge 77.6 7.7 0.00017 37.8 7.4 34 71-104 7-41 (260)
289 cd08230 glucose_DH Glucose deh 77.6 13 0.00029 38.2 9.4 33 70-102 172-204 (355)
290 PRK14478 nitrogenase molybdenu 77.5 8.1 0.00017 41.8 8.0 88 71-172 324-415 (475)
291 PRK13304 L-aspartate dehydroge 77.5 11 0.00023 37.4 8.3 87 72-173 2-90 (265)
292 CHL00076 chlB photochlorophyll 77.5 13 0.00029 40.6 9.7 70 71-149 305-380 (513)
293 PRK06940 short chain dehydroge 77.3 12 0.00026 37.0 8.7 33 70-103 1-33 (275)
294 PRK06947 glucose-1-dehydrogena 77.2 10 0.00023 36.5 8.1 32 70-101 1-33 (248)
295 PLN02778 3,5-epimerase/4-reduc 77.1 9.9 0.00021 38.3 8.1 29 71-99 9-38 (298)
296 PRK06482 short chain dehydroge 77.0 9.1 0.0002 37.7 7.7 34 70-103 1-35 (276)
297 PRK09620 hypothetical protein; 77.0 8.7 0.00019 37.2 7.3 23 80-102 29-51 (229)
298 TIGR00460 fmt methionyl-tRNA f 76.9 10 0.00022 38.6 8.1 35 72-106 1-35 (313)
299 PRK06128 oxidoreductase; Provi 76.9 9.7 0.00021 38.2 8.0 37 67-103 51-88 (300)
300 PLN00141 Tic62-NAD(P)-related 76.8 11 0.00023 36.8 8.1 34 71-104 17-51 (251)
301 PRK06198 short chain dehydroge 76.8 9.9 0.00021 36.9 7.9 35 69-103 4-40 (260)
302 PLN00200 argininosuccinate syn 76.8 23 0.00049 37.4 10.7 34 70-103 4-39 (404)
303 PRK15181 Vi polysaccharide bio 76.6 13 0.00027 38.3 8.9 32 71-102 15-47 (348)
304 PRK02910 light-independent pro 76.5 18 0.00038 39.7 10.3 87 70-172 292-384 (519)
305 PRK06935 2-deoxy-D-gluconate 3 76.5 11 0.00024 36.7 8.1 33 71-103 15-48 (258)
306 COG1063 Tdh Threonine dehydrog 76.4 7.4 0.00016 40.3 7.1 92 72-168 170-263 (350)
307 TIGR01282 nifD nitrogenase mol 76.3 3 6.5E-05 45.0 4.3 87 71-171 335-425 (466)
308 PRK07984 enoyl-(acyl carrier p 76.2 11 0.00023 37.2 7.9 36 68-103 3-41 (262)
309 PLN02871 UDP-sulfoquinovose:DA 76.1 50 0.0011 35.4 13.7 86 83-172 80-172 (465)
310 PRK00509 argininosuccinate syn 76.0 21 0.00046 37.5 10.3 33 71-103 2-36 (399)
311 cd01981 Pchlide_reductase_B Pc 76.0 15 0.00032 39.2 9.4 87 70-172 300-392 (430)
312 PF02826 2-Hacid_dh_C: D-isome 75.9 6.9 0.00015 36.2 6.1 35 70-104 35-69 (178)
313 PRK00005 fmt methionyl-tRNA fo 75.7 10 0.00022 38.6 7.7 34 72-105 1-34 (309)
314 PRK07814 short chain dehydroge 75.7 8.6 0.00019 37.6 7.1 34 71-104 10-44 (263)
315 PRK07067 sorbitol dehydrogenas 75.6 11 0.00025 36.5 7.9 34 71-104 6-40 (257)
316 TIGR01133 murG undecaprenyldip 75.6 29 0.00063 35.2 11.3 80 73-152 2-99 (348)
317 PRK08690 enoyl-(acyl carrier p 75.5 6.7 0.00015 38.5 6.3 36 67-102 2-40 (261)
318 cd08285 NADP_ADH NADP(H)-depen 75.4 10 0.00022 38.9 7.8 95 69-169 165-261 (351)
319 PRK07060 short chain dehydroge 75.4 12 0.00026 35.9 7.9 75 71-152 9-86 (245)
320 PRK06079 enoyl-(acyl carrier p 75.4 6.3 0.00014 38.4 6.0 33 71-103 7-42 (252)
321 PF01262 AlaDh_PNT_C: Alanine 75.4 5.6 0.00012 36.4 5.3 33 71-103 20-52 (168)
322 PRK00436 argC N-acetyl-gamma-g 75.3 10 0.00023 39.1 7.8 97 70-175 1-99 (343)
323 PRK07102 short chain dehydroge 75.1 9.8 0.00021 36.6 7.3 34 71-104 1-35 (243)
324 PRK06172 short chain dehydroge 75.1 11 0.00025 36.3 7.8 34 71-104 7-41 (253)
325 PRK07478 short chain dehydroge 75.0 12 0.00025 36.3 7.8 34 71-104 6-40 (254)
326 PRK10262 thioredoxin reductase 74.9 8.7 0.00019 39.0 7.1 35 67-101 2-36 (321)
327 PRK05868 hypothetical protein; 74.9 4.9 0.00011 41.9 5.3 33 71-103 1-33 (372)
328 PRK07023 short chain dehydroge 74.8 14 0.00031 35.4 8.3 33 72-104 2-35 (243)
329 PRK06841 short chain dehydroge 74.7 12 0.00026 36.2 7.8 34 71-104 15-49 (255)
330 PRK07453 protochlorophyllide o 74.6 12 0.00025 38.1 7.9 34 70-103 5-39 (322)
331 PRK07523 gluconate 5-dehydroge 74.6 5.8 0.00013 38.5 5.5 33 71-103 10-43 (255)
332 PRK06552 keto-hydroxyglutarate 74.6 30 0.00066 33.1 10.2 24 78-101 22-45 (213)
333 PRK08306 dipicolinate synthase 74.5 5.9 0.00013 40.0 5.6 33 71-103 152-184 (296)
334 TIGR03586 PseI pseudaminic aci 74.4 68 0.0015 32.9 13.2 155 81-274 17-172 (327)
335 TIGR03366 HpnZ_proposed putati 74.4 7.6 0.00017 38.5 6.4 32 70-101 120-152 (280)
336 PRK08589 short chain dehydroge 74.3 9.9 0.00021 37.5 7.2 35 69-103 4-39 (272)
337 PRK05876 short chain dehydroge 74.2 12 0.00025 37.2 7.6 35 69-103 4-39 (275)
338 PRK10084 dTDP-glucose 4,6 dehy 74.1 16 0.00035 37.4 9.0 73 72-151 1-81 (352)
339 cd01974 Nitrogenase_MoFe_beta 74.0 9.7 0.00021 40.7 7.4 88 71-172 303-399 (435)
340 PRK03369 murD UDP-N-acetylmura 73.9 15 0.00032 40.0 8.9 86 71-173 12-99 (488)
341 PRK05476 S-adenosyl-L-homocyst 73.7 10 0.00022 40.3 7.3 35 70-104 211-245 (425)
342 PRK05335 tRNA (uracil-5-)-meth 73.7 6 0.00013 42.0 5.6 36 70-105 1-36 (436)
343 PRK05875 short chain dehydroge 73.6 9.8 0.00021 37.4 6.9 33 71-103 7-40 (276)
344 PRK07890 short chain dehydroge 73.6 9.4 0.0002 37.0 6.7 34 71-104 5-39 (258)
345 cd01968 Nitrogenase_NifE_I Nit 73.5 12 0.00027 39.5 8.0 88 71-172 287-378 (410)
346 COG1671 Uncharacterized protei 73.4 69 0.0015 28.7 13.9 113 73-199 3-121 (150)
347 PRK05717 oxidoreductase; Valid 73.4 18 0.0004 35.0 8.8 33 71-103 10-43 (255)
348 PRK06753 hypothetical protein; 73.3 5.5 0.00012 41.3 5.2 33 72-104 1-33 (373)
349 KOG0024 Sorbitol dehydrogenase 73.2 14 0.00031 37.4 7.7 169 67-256 166-341 (354)
350 PRK12771 putative glutamate sy 73.2 15 0.00033 40.7 8.9 34 70-103 136-169 (564)
351 cd08281 liver_ADH_like1 Zinc-d 73.2 9.8 0.00021 39.5 7.1 93 70-169 191-285 (371)
352 PRK02705 murD UDP-N-acetylmura 73.0 24 0.00052 37.8 10.3 92 73-173 2-97 (459)
353 PRK10309 galactitol-1-phosphat 73.0 12 0.00027 38.2 7.7 97 70-173 160-260 (347)
354 PRK08703 short chain dehydroge 72.9 7.8 0.00017 37.2 5.9 35 70-104 5-40 (239)
355 PRK08220 2,3-dihydroxybenzoate 72.8 26 0.00057 33.6 9.7 34 71-104 8-42 (252)
356 PRK12384 sorbitol-6-phosphate 72.8 16 0.00035 35.4 8.2 34 70-103 1-35 (259)
357 PRK06171 sorbitol-6-phosphate 72.8 28 0.0006 33.9 9.9 35 71-105 9-44 (266)
358 KOG1399 Flavin-containing mono 72.8 5.5 0.00012 42.6 5.1 40 69-108 4-43 (448)
359 PRK08263 short chain dehydroge 72.7 9.4 0.0002 37.6 6.6 34 70-103 2-36 (275)
360 TIGR03013 EpsB_2 sugar transfe 72.5 25 0.00054 37.6 10.1 68 71-151 124-194 (442)
361 KOG1502 Flavonol reductase/cin 72.4 9.9 0.00022 38.7 6.5 75 70-150 5-85 (327)
362 PRK12823 benD 1,6-dihydroxycyc 72.3 10 0.00022 36.9 6.6 33 71-103 8-41 (260)
363 TIGR00036 dapB dihydrodipicoli 72.1 37 0.00079 33.7 10.6 118 72-200 2-122 (266)
364 cd01492 Aos1_SUMO Ubiquitin ac 72.1 17 0.00036 34.3 7.8 120 71-202 21-141 (197)
365 TIGR02853 spore_dpaA dipicolin 72.1 6.3 0.00014 39.6 5.1 33 71-103 151-183 (287)
366 PRK05690 molybdopterin biosynt 72.1 33 0.0007 33.6 10.0 30 71-100 32-61 (245)
367 PLN02696 1-deoxy-D-xylulose-5- 72.0 65 0.0014 34.4 12.6 127 71-201 57-204 (454)
368 PRK09134 short chain dehydroge 71.9 23 0.0005 34.4 9.1 34 69-102 7-41 (258)
369 PRK08300 acetaldehyde dehydrog 71.9 16 0.00035 36.9 7.9 100 71-178 4-104 (302)
370 TIGR03570 NeuD_NnaD sugar O-ac 71.8 19 0.0004 33.4 8.1 29 73-101 1-29 (201)
371 PRK06382 threonine dehydratase 71.8 36 0.00077 36.0 11.0 98 72-196 74-172 (406)
372 TIGR01179 galE UDP-glucose-4-e 71.7 20 0.00043 35.9 8.8 73 73-152 1-79 (328)
373 cd00316 Oxidoreductase_nitroge 71.6 28 0.00061 36.4 10.3 86 71-172 279-370 (399)
374 cd01994 Alpha_ANH_like_IV This 71.6 90 0.002 29.3 12.7 134 78-231 7-147 (194)
375 COG0373 HemA Glutamyl-tRNA red 71.6 6.7 0.00014 41.3 5.3 71 71-153 178-248 (414)
376 cd01971 Nitrogenase_VnfN_like 71.5 32 0.00069 36.7 10.6 86 71-172 293-393 (427)
377 PRK06847 hypothetical protein; 71.4 7.3 0.00016 40.3 5.7 33 71-103 4-36 (375)
378 PRK09126 hypothetical protein; 71.4 6.1 0.00013 41.2 5.1 35 70-104 2-36 (392)
379 PRK07576 short chain dehydroge 71.3 12 0.00026 36.7 6.9 34 71-104 9-43 (264)
380 PRK09224 threonine dehydratase 71.3 33 0.00072 37.4 10.8 31 72-102 69-99 (504)
381 COG0673 MviM Predicted dehydro 71.3 21 0.00046 36.3 9.0 147 70-229 2-154 (342)
382 PRK06523 short chain dehydroge 71.3 26 0.00055 34.0 9.3 34 71-104 9-43 (260)
383 PRK02472 murD UDP-N-acetylmura 71.3 31 0.00068 36.7 10.6 94 71-178 5-101 (447)
384 PRK08163 salicylate hydroxylas 71.2 7.6 0.00016 40.6 5.8 33 71-103 4-36 (396)
385 PRK06914 short chain dehydroge 71.2 15 0.00033 36.1 7.7 35 70-104 2-37 (280)
386 PF09370 TIM-br_sig_trns: TIM- 71.2 52 0.0011 32.4 10.9 153 86-257 27-208 (268)
387 PRK07035 short chain dehydroge 71.2 14 0.00031 35.6 7.4 33 71-103 8-41 (252)
388 PRK06949 short chain dehydroge 71.1 14 0.00031 35.7 7.4 34 71-104 9-43 (258)
389 PLN02214 cinnamoyl-CoA reducta 71.1 18 0.0004 37.1 8.5 34 71-104 10-44 (342)
390 COG3494 Uncharacterized protei 71.1 14 0.0003 36.0 6.8 69 73-150 7-75 (279)
391 COG0451 WcaG Nucleoside-diphos 71.1 15 0.00034 36.5 7.8 33 73-105 2-35 (314)
392 PRK00683 murD UDP-N-acetylmura 71.0 19 0.00042 38.1 8.8 85 71-172 3-87 (418)
393 PRK08278 short chain dehydroge 70.9 29 0.00063 34.1 9.6 34 71-104 6-40 (273)
394 PRK08251 short chain dehydroge 70.8 14 0.00031 35.4 7.3 34 71-104 2-36 (248)
395 PRK05866 short chain dehydroge 70.8 16 0.00036 36.5 7.9 34 71-104 40-74 (293)
396 PRK06197 short chain dehydroge 70.5 12 0.00025 37.7 6.7 35 69-103 14-49 (306)
397 PRK07502 cyclohexadienyl dehyd 70.5 5.5 0.00012 40.3 4.4 36 66-101 1-38 (307)
398 PLN02253 xanthoxin dehydrogena 70.5 18 0.0004 35.5 8.1 33 71-103 18-51 (280)
399 PF00670 AdoHcyase_NAD: S-aden 70.5 5.9 0.00013 36.1 4.0 32 71-102 23-54 (162)
400 PRK05557 fabG 3-ketoacyl-(acyl 70.4 23 0.00051 33.7 8.7 33 72-104 6-39 (248)
401 PRK08063 enoyl-(acyl carrier p 70.4 18 0.00039 34.7 7.9 31 71-101 4-35 (250)
402 PRK08309 short chain dehydroge 70.4 27 0.00057 32.3 8.5 32 72-103 1-32 (177)
403 TIGR01284 alt_nitrog_alph nitr 70.3 15 0.00032 39.6 7.8 88 71-172 325-417 (457)
404 PLN02986 cinnamyl-alcohol dehy 70.3 17 0.00037 36.7 8.0 33 71-103 5-38 (322)
405 PRK04308 murD UDP-N-acetylmura 70.2 35 0.00076 36.4 10.7 92 71-178 5-100 (445)
406 PF02843 GARS_C: Phosphoribosy 70.2 2.9 6.3E-05 34.4 1.8 33 452-484 50-82 (93)
407 PRK08773 2-octaprenyl-3-methyl 70.1 6.4 0.00014 41.2 4.9 35 69-103 4-38 (392)
408 PRK06181 short chain dehydroge 70.1 13 0.00028 36.1 6.9 32 72-103 2-34 (263)
409 PRK12409 D-amino acid dehydrog 70.1 7.1 0.00015 41.1 5.3 32 72-103 2-33 (410)
410 cd00757 ThiF_MoeB_HesA_family 70.0 38 0.00082 32.6 9.9 31 71-101 21-51 (228)
411 PRK08217 fabG 3-ketoacyl-(acyl 70.0 12 0.00027 35.9 6.6 34 71-104 5-39 (253)
412 PRK08329 threonine synthase; V 69.8 40 0.00087 34.8 10.7 61 135-196 142-203 (347)
413 PRK08628 short chain dehydroge 69.6 23 0.0005 34.3 8.5 34 71-104 7-41 (258)
414 TIGR01418 PEP_synth phosphoeno 69.6 1.6E+02 0.0035 34.1 16.3 42 315-358 286-328 (782)
415 PRK06701 short chain dehydroge 69.6 22 0.00047 35.5 8.5 34 70-103 45-79 (290)
416 PRK14477 bifunctional nitrogen 69.6 17 0.00036 42.8 8.5 88 71-172 320-411 (917)
417 PRK06475 salicylate hydroxylas 69.5 8.1 0.00017 40.6 5.5 31 72-102 3-33 (400)
418 PF08886 GshA: Glutamate-cyste 69.4 7 0.00015 40.2 4.7 51 224-274 263-316 (404)
419 PRK06139 short chain dehydroge 69.4 13 0.00028 38.1 6.9 34 71-104 7-41 (330)
420 PRK08198 threonine dehydratase 69.3 33 0.00071 36.2 10.1 98 71-195 70-168 (404)
421 cd08261 Zn_ADH7 Alcohol dehydr 69.3 12 0.00026 38.0 6.6 76 71-152 160-236 (337)
422 PRK06463 fabG 3-ketoacyl-(acyl 69.2 22 0.00048 34.4 8.3 33 71-103 7-40 (255)
423 PRK07825 short chain dehydroge 69.2 11 0.00024 37.0 6.1 34 71-104 5-39 (273)
424 COG1181 DdlA D-alanine-D-alani 69.1 0.38 8.3E-06 49.0 -4.4 110 178-293 45-158 (317)
425 TIGR01860 VNFD nitrogenase van 69.1 22 0.00048 38.3 8.8 89 70-172 326-419 (461)
426 PRK12483 threonine dehydratase 69.1 33 0.00071 37.6 10.1 31 72-102 86-116 (521)
427 TIGR01862 N2-ase-Ialpha nitrog 69.1 21 0.00046 38.2 8.7 88 71-172 317-409 (443)
428 PLN02586 probable cinnamyl alc 69.0 22 0.00048 36.7 8.6 72 70-152 183-256 (360)
429 PRK11579 putative oxidoreducta 69.0 15 0.00033 37.8 7.4 141 72-228 5-150 (346)
430 PRK05884 short chain dehydroge 68.9 12 0.00027 35.6 6.3 31 73-103 2-33 (223)
431 PRK08229 2-dehydropantoate 2-r 68.9 7.5 0.00016 39.9 5.0 33 70-102 1-33 (341)
432 COG2240 PdxK Pyridoxal/pyridox 68.8 27 0.00059 34.7 8.5 147 85-240 19-193 (281)
433 TIGR01832 kduD 2-deoxy-D-gluco 68.6 23 0.0005 34.0 8.2 32 71-102 5-37 (248)
434 COG0075 Serine-pyruvate aminot 68.6 36 0.00077 35.6 9.8 33 71-103 80-112 (383)
435 PLN02427 UDP-apiose/xylose syn 68.5 24 0.00052 36.8 8.9 31 72-102 15-47 (386)
436 PRK14476 nitrogenase molybdenu 68.5 26 0.00055 37.8 9.1 83 71-172 311-393 (455)
437 TIGR01127 ilvA_1Cterm threonin 68.4 44 0.00095 34.9 10.7 98 72-196 49-147 (380)
438 PLN02662 cinnamyl-alcohol dehy 68.3 15 0.00033 36.9 7.1 33 72-104 5-38 (322)
439 PRK05597 molybdopterin biosynt 68.3 27 0.00059 36.2 9.0 31 71-101 28-58 (355)
440 PRK07533 enoyl-(acyl carrier p 68.3 20 0.00044 34.9 7.8 33 71-103 10-45 (258)
441 PLN02896 cinnamyl-alcohol dehy 68.2 20 0.00044 36.8 8.1 33 71-103 10-43 (353)
442 PRK12367 short chain dehydroge 68.2 27 0.00058 34.0 8.5 34 71-104 14-48 (245)
443 COG0604 Qor NADPH:quinone redu 68.1 9.3 0.0002 39.1 5.5 76 71-152 143-220 (326)
444 PLN02650 dihydroflavonol-4-red 68.1 22 0.00049 36.4 8.4 33 71-103 5-38 (351)
445 cd01485 E1-1_like Ubiquitin ac 68.1 46 0.00099 31.4 9.8 31 71-101 19-50 (198)
446 TIGR01318 gltD_gamma_fam gluta 68.1 19 0.00042 38.8 8.1 33 70-102 140-172 (467)
447 PRK06349 homoserine dehydrogen 68.1 49 0.0011 35.3 11.1 113 72-199 4-126 (426)
448 PRK08213 gluconate 5-dehydroge 68.1 17 0.00037 35.3 7.2 33 71-103 12-45 (259)
449 PF01494 FAD_binding_3: FAD bi 68.0 9.1 0.0002 38.8 5.4 33 73-105 3-35 (356)
450 PRK06113 7-alpha-hydroxysteroi 68.0 20 0.00043 34.8 7.6 33 71-103 11-44 (255)
451 PLN02740 Alcohol dehydrogenase 68.0 24 0.00053 36.7 8.7 79 70-153 198-278 (381)
452 PRK09186 flagellin modificatio 67.8 19 0.00041 34.8 7.5 33 71-103 4-37 (256)
453 PRK13301 putative L-aspartate 67.8 30 0.00064 34.3 8.5 127 70-215 1-132 (267)
454 PRK12809 putative oxidoreducta 67.8 20 0.00044 40.4 8.5 34 71-104 310-343 (639)
455 PF04174 CP_ATPgrasp_1: A circ 67.8 8.6 0.00019 39.4 5.0 60 193-255 262-322 (330)
456 PRK09880 L-idonate 5-dehydroge 67.7 14 0.00031 37.8 6.8 96 70-174 169-267 (343)
457 cd05284 arabinose_DH_like D-ar 67.7 16 0.00035 37.0 7.2 75 71-152 168-244 (340)
458 PRK05447 1-deoxy-D-xylulose 5- 67.5 48 0.0011 34.7 10.5 169 71-249 1-189 (385)
459 PRK12810 gltD glutamate syntha 67.4 26 0.00056 37.8 9.0 33 71-103 143-175 (471)
460 PRK07530 3-hydroxybutyryl-CoA 67.3 7.4 0.00016 39.0 4.5 35 69-103 2-36 (292)
461 TIGR00290 MJ0570_dom MJ0570-re 67.3 1.2E+02 0.0027 29.2 12.6 138 75-232 6-145 (223)
462 PRK09291 short chain dehydroge 67.2 9.2 0.0002 37.0 5.1 34 70-103 1-35 (257)
463 PRK10538 malonic semialdehyde 67.2 18 0.00039 34.9 7.1 33 72-104 1-34 (248)
464 cd08269 Zn_ADH9 Alcohol dehydr 67.2 16 0.00034 36.4 6.9 77 71-153 130-208 (312)
465 PRK08328 hypothetical protein; 67.2 57 0.0012 31.5 10.5 34 71-105 27-60 (231)
466 PRK07109 short chain dehydroge 67.1 16 0.00034 37.5 6.9 33 71-103 8-41 (334)
467 PRK08762 molybdopterin biosynt 67.1 44 0.00096 34.9 10.4 31 70-100 134-165 (376)
468 PRK07831 short chain dehydroge 67.0 18 0.00039 35.2 7.2 33 71-103 17-51 (262)
469 PRK05600 thiamine biosynthesis 66.9 23 0.00051 36.9 8.2 30 71-100 41-71 (370)
470 PF00743 FMO-like: Flavin-bind 66.8 7.9 0.00017 42.5 4.9 37 72-108 2-38 (531)
471 PLN02172 flavin-containing mon 66.7 9.3 0.0002 41.2 5.3 36 71-106 10-45 (461)
472 PRK06997 enoyl-(acyl carrier p 66.7 20 0.00043 35.1 7.3 33 69-101 4-39 (260)
473 PF09314 DUF1972: Domain of un 66.6 31 0.00067 32.2 8.1 142 71-217 1-168 (185)
474 COG2344 AT-rich DNA-binding pr 66.5 43 0.00093 31.3 8.7 88 71-172 84-174 (211)
475 PRK10637 cysG siroheme synthas 66.5 19 0.00042 38.7 7.7 32 71-102 12-43 (457)
476 PRK12936 3-ketoacyl-(acyl-carr 66.5 24 0.00051 33.7 7.8 32 71-102 6-38 (245)
477 PRK05867 short chain dehydroge 66.4 20 0.00042 34.7 7.2 33 71-103 9-42 (253)
478 PRK08340 glucose-1-dehydrogena 66.3 19 0.00042 35.0 7.2 32 72-103 1-33 (259)
479 COG0821 gcpE 1-hydroxy-2-methy 66.1 19 0.00042 36.4 6.9 151 83-256 38-192 (361)
480 PRK15116 sulfur acceptor prote 66.1 27 0.00058 34.7 8.0 31 71-101 30-61 (268)
481 PRK07878 molybdopterin biosynt 66.1 40 0.00087 35.5 9.9 31 71-101 42-72 (392)
482 cd01076 NAD_bind_1_Glu_DH NAD( 66.0 92 0.002 30.1 11.6 33 69-101 29-61 (227)
483 KOG0029 Amine oxidase [Seconda 66.0 9.1 0.0002 41.6 5.1 34 70-103 14-47 (501)
484 KOG1371 UDP-glucose 4-epimeras 66.0 21 0.00046 36.2 7.2 74 71-148 2-82 (343)
485 PLN00093 geranylgeranyl diphos 66.0 16 0.00034 39.3 6.9 32 71-102 39-70 (450)
486 PRK02006 murD UDP-N-acetylmura 66.0 40 0.00087 36.6 10.2 94 71-179 7-107 (498)
487 TIGR02360 pbenz_hydroxyl 4-hyd 65.9 10 0.00022 39.7 5.4 34 70-103 1-34 (390)
488 PRK06196 oxidoreductase; Provi 65.8 12 0.00027 37.7 5.8 33 71-103 26-59 (315)
489 PRK12748 3-ketoacyl-(acyl-carr 65.8 45 0.00098 32.2 9.7 34 70-103 4-40 (256)
490 PRK06129 3-hydroxyacyl-CoA deh 65.8 7.9 0.00017 39.2 4.4 32 71-102 2-33 (308)
491 TIGR02825 B4_12hDH leukotriene 65.8 14 0.0003 37.4 6.2 77 70-152 138-216 (325)
492 PRK05329 anaerobic glycerol-3- 65.7 29 0.00062 37.0 8.7 33 71-103 2-34 (422)
493 PRK05786 fabG 3-ketoacyl-(acyl 65.7 17 0.00036 34.7 6.5 34 71-104 5-39 (238)
494 PRK12744 short chain dehydroge 65.6 47 0.001 32.1 9.8 32 71-102 8-40 (257)
495 cd06448 L-Ser-dehyd Serine deh 65.2 56 0.0012 33.2 10.5 31 71-101 51-81 (316)
496 PRK06035 3-hydroxyacyl-CoA deh 65.2 8.5 0.00018 38.6 4.4 32 71-102 3-34 (291)
497 PRK06815 hypothetical protein; 65.1 56 0.0012 33.2 10.5 98 72-196 69-167 (317)
498 PRK08243 4-hydroxybenzoate 3-m 65.1 11 0.00023 39.6 5.3 33 71-103 2-34 (392)
499 PRK08638 threonine dehydratase 65.0 52 0.0011 33.8 10.3 97 72-195 76-173 (333)
500 PRK06505 enoyl-(acyl carrier p 65.0 19 0.00041 35.5 6.9 32 71-102 7-41 (271)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=5.5e-113 Score=867.65 Aligned_cols=451 Identities=54% Similarity=0.923 Sum_probs=445.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|++||||+|||||++|+||+||++|+.+|+||+++|.+++|+++||+.+.|++.+..+||++.++|+++|++.++|+|||
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||||||+.|+++|++.|+.|+||++.+|+.++||...|.++.++|+|+.|+|...++|.+++..+++++|||++||++
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+|||||+++++.+|+.++++.+++++..+||++.++||+|+..|||+++||+.|++|+++++++||||+||+|||++|
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
++|+|.|+++.+++|.+.|.++++++||.|+++|||+++.++.|||||||+|+|++||+||++||+||++||++++.|++
T Consensus 241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Gek 320 (645)
T COG4770 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEK 320 (645)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
|++.|.+++.+||++++|||||||.++|+|++|+++.+.+|.++++|+|+.+..|+.|+++||||++|+|+||.||++|+
T Consensus 321 L~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl 400 (645)
T COG4770 321 LPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEAL 400 (645)
T ss_pred CCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccCC
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAP 520 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~ 520 (537)
+++.+||+++.|.|+.||++||+.++.||+|+.|+.||.||.++.+++.++
T Consensus 401 ~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~~ 451 (645)
T COG4770 401 DRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAP 451 (645)
T ss_pred HHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcceeeeecccccccC
Confidence 999999999999999999999999999999999999999999999887644
No 2
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-109 Score=827.93 Aligned_cols=451 Identities=57% Similarity=0.958 Sum_probs=442.6
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009323 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 74 vLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~ 153 (537)
|||+|||+||+|+|++||+||+++++||++.|.++.|+++||+.+++++++...+|++.+.|++++++.++.+|||||||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 009323 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGG 233 (537)
Q Consensus 154 ~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~g 233 (537)
|||+..|++.|++.|+.|+||++.+++.++||...|++++++|+|+.|+|.....|.+++.+.++++|||+|||+..|+|
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEEcCC
Q 009323 234 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS 313 (537)
Q Consensus 234 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~~p~ 313 (537)
|+|++++.+++|+.+.++.+++++..+||++.+++|+||+.+||+++|+++|++|+++++++|||++||++||++|++|+
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa 240 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCCCCCC
Q 009323 314 PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 393 (537)
Q Consensus 314 ~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~l~~~ 393 (537)
|.++++.+.+|.+.|.++++++||.|+++|||++|.+++|||+|||+|+|++||+||++||+||++||||+|.|++++++
T Consensus 241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~~ 320 (670)
T KOG0238|consen 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPLK 320 (670)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred CCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCC-CCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHHHHH
Q 009323 394 QEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAG-GPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERM 472 (537)
Q Consensus 394 ~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~-~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~ 472 (537)
|++++.+||+++||+|||||.++|+|++|.+..+..|. .|++|+|+++++|+.|+++||||++++++||.||++|+.|+
T Consensus 321 q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl 400 (670)
T KOG0238|consen 321 QEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKL 400 (670)
T ss_pred cceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHH
Confidence 99999999999999999999999999999999997764 68999999999999999999999999999999999999999
Q ss_pred HHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccCCccee
Q 009323 473 KRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIV 524 (537)
Q Consensus 473 ~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~ 524 (537)
.++|+++.|.|++|||+||+.|+.|++|..|+++|.||++|..++.++..+.
T Consensus 401 ~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~ 452 (670)
T KOG0238|consen 401 KDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESIT 452 (670)
T ss_pred HHHHhhcEEecCccchHHHHHHhcChhhhcCccccccchhcCccccCccccC
Confidence 9999999999999999999999999999999999999999999987765443
No 3
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=7.1e-97 Score=768.39 Aligned_cols=451 Identities=51% Similarity=0.857 Sum_probs=437.2
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCC-CCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGE-APSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~-~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
++++||||+|||+|+.|+.|+|.++|+++|++|+..|..+.|...|||.|.+|. ..+.++|+++++|+.+|++.++|+|
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaI 84 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAI 84 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCee
Confidence 347999999999999999999999999999999999999999999999999984 3456899999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEE
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvK 227 (537)
||||||+|||++|++.|.+.||.|+||+++.++.++||..+|..+.++|+|+.|+....+++.+++.++++++|||+|||
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiK 164 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIK 164 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred ecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeeccccccccee
Q 009323 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~ 307 (537)
++.|+||+||+++.+++++.+.++++.+++..+||+++++||+||++++|++||+++|.+|+++|+.+||||+||+|||+
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKV 244 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKV 244 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcC
Q 009323 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (537)
Q Consensus 308 ~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G 387 (537)
+|.+|++.|+++++++|++.|.++++.+||.|++++||++|.+|++||||||||+|++|++||++||+|+++.|++++.|
T Consensus 245 VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 245 VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------CCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEe-eeccCCCccCCCCCcccEEEEE
Q 009323 388 GKLR------YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMD-SHVYPDYVVPPSYDSLLGKLIV 460 (537)
Q Consensus 388 ~~l~------~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~-~~~~~G~~v~~~~ds~ig~vi~ 460 (537)
..+. +.++++...|++++|||+.|||.++|.|..|+|+.++.+++.|||+| -..+.|..|+|+|||++-|+.+
T Consensus 325 ~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~ 404 (1149)
T COG1038 325 ATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTC 404 (1149)
T ss_pred CccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEee
Confidence 9985 34566889999999999999999999999999999999999999999 6678999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccC
Q 009323 461 WAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQA 519 (537)
Q Consensus 461 ~g~~~~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 519 (537)
||.++++|++||.|+|.+++|+|++|||+||..++.||.|.+|.|+|+||++..+.+..
T Consensus 405 ~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~tPeLf~~ 463 (1149)
T COG1038 405 WGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTTPELFQF 463 (1149)
T ss_pred cCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccCcceeeeccCCHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988863
No 4
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=3.6e-93 Score=736.45 Aligned_cols=447 Identities=59% Similarity=0.991 Sum_probs=437.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|++||||+|+|+++.+++++|+++|+++++||++.|..+.|..++|+.+++++.+..++|+|+++++..++..++|+|||
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence 68999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||++||+.|+++|++.|+.|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++||||||||+
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999765678889999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+||++|++.+||.+++..+++++...|+++.+++||||++++|+++|+++|++|+++++++|+|++|+++||+++
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
++|++.++++.++++.+.+.++++.+||.|++|+||+++.+|+|||+|||||+||+|++++++||+|++++|+++++|++
T Consensus 241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~ 320 (449)
T COG0439 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEP 320 (449)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999977789999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++++++++..+||+++|||++|||..+|.|+||.++.+.+|++++++++.+++.|.+|+++||||+||+|++|.++++|+
T Consensus 321 l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai 400 (449)
T COG0439 321 LSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAI 400 (449)
T ss_pred CCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhh
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE 516 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 516 (537)
.++.++|.++.|+|++||++|++.++.+++|.+|+++|+||++++..
T Consensus 401 ~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~~ 447 (449)
T COG0439 401 ARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLEP 447 (449)
T ss_pred HHHHHHHHheEecCccCChHHHHHHhcChHhhcCCcchhhhhhcccc
Confidence 99999999999999999999999999999999999999999987653
No 5
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=3.6e-90 Score=738.20 Aligned_cols=443 Identities=55% Similarity=0.951 Sum_probs=427.5
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|+|+++++++++|+++|+++++++++.|.++++.++||+.+++++.+..++|+|.+.|+++|++.++|+|||
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
+|||++|++.+++.++..|++|+||+++++..++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~ 160 (499)
T PRK08654 81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160 (499)
T ss_pred CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998543478999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|+++|++.+||.++++.+..++...|+++.+++|+||++++|++++++.|++|+++++++++|+++++++++++
T Consensus 161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie 240 (499)
T PRK08654 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 (499)
T ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence 99999999999999999999999988887788888999999999989999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
++|++.++++++++|.+.+.++++++||.|++++||++++ |++||+|||||+|++|+++++++|+|++++++++++|.+
T Consensus 241 ~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~-g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~ 319 (499)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSN-GNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEE 319 (499)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEC-CcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCCC
Confidence 9999889999999999999999999999999999999974 679999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
+++.+.++..+||+++|||+||||...|.|++|+|+.+..|+++++|+|++++.|+.|+++|||++||||++|+|+++|+
T Consensus 320 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~ 399 (499)
T PRK08654 320 LSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAI 399 (499)
T ss_pred CCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHH
Confidence 99888778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccc
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKH 513 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 513 (537)
+++.+||+++.|+|++||++||+.||.||+|++|+++|+||+++
T Consensus 400 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~ 443 (499)
T PRK08654 400 ARMRRALYEYVIVGVKTNIPFHKAVMENENFVRGNLHTHFIEEE 443 (499)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 99999999999999999999999999999999999999999998
No 6
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=9.6e-88 Score=687.25 Aligned_cols=448 Identities=47% Similarity=0.775 Sum_probs=435.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCC-CCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGE-APSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~-~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.+||||+|||+++.|+.|+|.++|++++++|+..|..+.|.+.|||.+.++. .++...|+.+++|+++|+++++|+|||
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 3799999999999999999999999999999999999999999999999984 466788999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
||||+||+.+|++.+.+.|+.|+||+++.+..++||..+|.++-++|+|+.|+....+++.+++.+|+++.|+|+|+|+.
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|+++|++.+++++.|+++.+++..+||++.++||+||+.++|++||.++|.+|+++|+.+|||++||+|||+.+
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
.+|++.|+++++++|...+.++++.+||..++++||++|..|++||||||||+|++|+++|.+||+||+..|+++|.|..
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC---CCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEee-eccCCCccCCCCCcccEEEEEEcCCH
Q 009323 390 LR---YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTR 465 (537)
Q Consensus 390 l~---~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~-~~~~G~~v~~~~ds~ig~vi~~g~~~ 465 (537)
++ +.|+.+..+|.+|+||++.|||.++|.|..|+|+.++.-.+.|+|+|. ..+.|..|+|+|||++-++|+.|.|.
T Consensus 353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~ 432 (1176)
T KOG0369|consen 353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY 432 (1176)
T ss_pred cccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCcc
Confidence 74 568889999999999999999999999999999999999999999974 46789999999999999999999999
Q ss_pred HHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhcc
Q 009323 466 EKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 518 (537)
Q Consensus 466 ~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 518 (537)
+-+..||.|+|.+++|+|++|||+||..+|.++.|.+|.++|.||+++.+.++
T Consensus 433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~PeLFq 485 (1176)
T KOG0369|consen 433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDETPELFQ 485 (1176)
T ss_pred HHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeeeeeeeEEecCChHHhc
Confidence 99999999999999999999999999999999999999999999999988774
No 7
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.9e-85 Score=701.83 Aligned_cols=446 Identities=54% Similarity=0.888 Sum_probs=425.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|+|+++++++++|+++|++++++++++|..+++.++||+.+++++.+. ++|.|.+.|+++|++.++|+|||
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~p 79 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHP 79 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEe
Confidence 58999999999999999999999999999999999999999999999999976554 88999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
+|||++|+..+++.++++|++++||+++++..++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||.
T Consensus 80 g~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~ 159 (472)
T PRK07178 80 GYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKAT 159 (472)
T ss_pred CCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998544578999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|+++|++.+||.++++.+.+++...+++.++++|+||++++|++++++.|++|+++++++++|++++++++..+
T Consensus 160 ~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e 239 (472)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239 (472)
T ss_pred CCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEE
Confidence 99999999999999999999999888877778888999999999989999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
.+|++.++++.+++|.+.+.++++++||.|++++||+++++|++||+|||||+|++|++++.++|+|++++++++++|++
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~ 319 (472)
T PRK07178 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLP 319 (472)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCCC
Confidence 99998899999999999999999999999999999999977889999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
+++.+..+..+||++++|+++|||.++|.|++|.|+.+..|+++++|+|+++++|+.|+++|||++|+||++|+|+++|+
T Consensus 320 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~ 399 (472)
T PRK07178 320 LSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEAL 399 (472)
T ss_pred CCCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHH
Confidence 98877777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhh
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE 516 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 516 (537)
+++.+++++++|+|++||++||+.||.||+|.+|+++|+||+++.+.
T Consensus 400 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 446 (472)
T PRK07178 400 DRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNTSFVESHPEL 446 (472)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccchhHhcChhh
Confidence 99999999999999999999999999999999999999999998433
No 8
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=3.1e-85 Score=700.68 Aligned_cols=448 Identities=51% Similarity=0.865 Sum_probs=425.5
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|+|+++++++++|+++|++++++++++|..+++.++||+.+++++.+ ..+|.|.+.|+++|++.++|+|||
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHHHHHhCCCEEEE
Confidence 6899999999999999999999999999999999999999999999999997654 388999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcc-CCCHHHHHHHHHHhCCcEEEEe
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~-~~s~~~~~~~~~~ig~PvvvKp 228 (537)
+|||++|+..+++.+++.|++++||+++++..++||..+|++|+++|||+||++... ..+.+++.++++++|||+||||
T Consensus 80 g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP 159 (478)
T PRK08463 80 GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999864322 3578999999999999999999
Q ss_pred cCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeE
Q 009323 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~ 308 (537)
..|+||+|++++++.+|+.++++.+..++...++++.+++|+||++++|++++++.|++|+++++.+++|+.++++++.+
T Consensus 160 ~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~i 239 (478)
T PRK08463 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceE
Confidence 99999999999999999999999887777777888899999999988999999999998999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCC
Q 009323 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 388 (537)
Q Consensus 309 ~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~ 388 (537)
+.+|++.++++++++|.+.+.++++++||.|++|+||+++++|++||+|||||+|++|++++.++|+|++++++++++|+
T Consensus 240 e~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G~ 319 (478)
T PRK08463 240 EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGE 319 (478)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcCC
Confidence 99999889999999999999999999999999999999998788999999999999999999999999999999999999
Q ss_pred CCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHH
Q 009323 389 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 468 (537)
Q Consensus 389 ~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea 468 (537)
++++.+..+..+||++++||+||||...|.|++|+|+.+.+|.++++|+|+++..|+.|+++|||++|++|++|+|+++|
T Consensus 320 ~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a 399 (478)
T PRK08463 320 ILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLA 399 (478)
T ss_pred CCCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHH
Confidence 99877766778899999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhcc
Q 009323 469 IERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 518 (537)
Q Consensus 469 ~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 518 (537)
++++.++|+++.|+|++||++||+.||.|++|++|+++|+||+++++++.
T Consensus 400 ~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 449 (478)
T PRK08463 400 VNKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDTSYIETHMQELL 449 (478)
T ss_pred HHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhc
Confidence 99999999999999999999999999999999999999999999988875
No 9
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=8.2e-85 Score=696.09 Aligned_cols=452 Identities=52% Similarity=0.864 Sum_probs=428.7
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
+|+|||||+|+|+++++++++|+++|+++++++++.|.++++.++||+.+++++....++|.|.+.|+++|++.++|+||
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~ 82 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH 82 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 34899999999999999999999999999999998898899999999999988877788999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEe
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp 228 (537)
|+|||++|++.+++.+++.|++++||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||
T Consensus 83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp 162 (467)
T PRK12833 83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA 162 (467)
T ss_pred ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999853478899999999999999999999
Q ss_pred cCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeE
Q 009323 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~ 308 (537)
..|+||+|+++|++.+||.++++.+.+++...|+++.++||+||++++|+++++++|++ +++++++++|+++++++++.
T Consensus 163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~ 241 (467)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL 241 (467)
T ss_pred CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence 99999999999999999999999988877777888899999999977999999999876 68899999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-CCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcC
Q 009323 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (537)
Q Consensus 309 ~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~-~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G 387 (537)
+++|++.++++.+++|.+.+.++++++||.|++|+||+++ ++|++||+|||||++++|++++.++|+|++++++++++|
T Consensus 242 e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G 321 (467)
T PRK12833 242 EEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADG 321 (467)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHCC
Confidence 9999877999999999999999999999999999999998 568899999999999999999999999999999999999
Q ss_pred CCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHH
Q 009323 388 GKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (537)
Q Consensus 388 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~e 467 (537)
+++++.+.++..+||++++|+++|||.+.|.|++|+++.+..|.++|+|+|++++.|++|+++|||++|+||++|+|+++
T Consensus 322 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~ 401 (467)
T PRK12833 322 EPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAA 401 (467)
T ss_pred CCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHH
Confidence 99988777778899999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhccCCc
Q 009323 468 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQ 521 (537)
Q Consensus 468 a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~ 521 (537)
|++++.+++++++|+|++||++||+.||.||+|++|+++|+||++++.++-+..
T Consensus 402 a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 455 (467)
T PRK12833 402 ALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTNFLEAWLAEWRAAL 455 (467)
T ss_pred HHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999988775443
No 10
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=2.2e-84 Score=740.40 Aligned_cols=446 Identities=50% Similarity=0.821 Sum_probs=426.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCC---CCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA---PSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~---~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
||||+|||+++.+++++|+++|+++++++++.|..+.+..+||+.+.+++. ...++|+|++.|+++|++.++|+|||
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999999999999999999999999998754 34578999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
+|||++|++.+++.+++.|++|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+||||.
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998544678999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|+++|++.+|+.++++.+.+++...|+++.+++|+||++++|+++++++|++|+++++.+|+|++++++++..+
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999998888889889999999999989999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
.+|++.++++.+++|.+.+.++++++||.|++++||++|++|++||+|||||+|++|+++++++|+|++++++++++|.+
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~ 320 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGAS 320 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCCC
Confidence 99998899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CC------CCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeee-ccCCCccCCCCCcccEEEEEEc
Q 009323 390 LR------YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSH-VYPDYVVPPSYDSLLGKLIVWA 462 (537)
Q Consensus 390 l~------~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~-~~~G~~v~~~~ds~ig~vi~~g 462 (537)
++ +.+..+..+||+|+|||++|||.++|.|++|+|+.+..|+++|+|+|++ .+.|+.|+++|||+++|+|+||
T Consensus 321 L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~ 400 (1143)
T TIGR01235 321 LPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWA 400 (1143)
T ss_pred CCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeC
Confidence 98 5677788899999999999999999999999999999999999999998 6799999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhcc
Q 009323 463 PTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 518 (537)
Q Consensus 463 ~~~~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 518 (537)
+||++|++||.+||++++|+|++||++||+++|.||+|++|+++|+||+++.+.+.
T Consensus 401 ~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t~~~~~~~~l~~ 456 (1143)
T TIGR01235 401 STPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDTRFIDTTPELFQ 456 (1143)
T ss_pred CCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccchhhhcChhhcC
Confidence 99999999999999999999999999999999999999999999999999955553
No 11
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=3.8e-81 Score=666.16 Aligned_cols=445 Identities=60% Similarity=1.015 Sum_probs=423.3
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|+|+++.+++++|+++|+++++++++.|.++++..+||+.+++++....++|.|.+.++++|++.++|+|+|
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 58999999999999999999999999999999888888899999999999887777778999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
+|||++|+..++..++..|++++||+++++..++||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~ 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 (447)
T ss_pred CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998544678999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|++++++.+|+.++++.+.+++...++++.+++|+||+|++|++++++.|.+|+++++++++|+.++++++..+
T Consensus 161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~ 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence 99999999999999999999999888776677778999999999989999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
.+|++.+++++++++.+.+.++++++||.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|.+
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~ 320 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEK 320 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCCC
Confidence 99987799999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
+++.+.++...|+++++||++|+|...|.|.+|.++.+..|..+++|+++++..|+.++++||+++|+||++|+|+++|+
T Consensus 321 l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~ 400 (447)
T PRK05586 321 LSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAI 400 (447)
T ss_pred CCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHH
Confidence 98776667788999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccch
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 514 (537)
+++.+||+++.|+|++||++||+.||.||+|.+|+++|+||++++
T Consensus 401 ~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 401 QKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 999999999999999999999999999999999999999999875
No 12
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.1e-80 Score=713.79 Aligned_cols=450 Identities=50% Similarity=0.847 Sum_probs=426.0
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~-~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
+|+|||||+|||+++.+++++|+++|+++++++++.|..+++..+||+.++++.. ...++|.|.+.|+++|+++++|+|
T Consensus 3 ~~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI 82 (1146)
T PRK12999 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAI 82 (1146)
T ss_pred CcccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEE
Confidence 4689999999999999999999999999999999999999999999999998754 335789999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEE
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvK 227 (537)
||+|||++|++.+++.+++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|||
T Consensus 83 ~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVK 162 (1146)
T PRK12999 83 HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLK 162 (1146)
T ss_pred EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999975336899999999999999999999
Q ss_pred ecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeeccccccccee
Q 009323 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~ 307 (537)
|..|+||+|+++|++.+||.++++.+.+++...|+++.+++|+||+|++|++++++.|++|+++++++++|+++++++++
T Consensus 163 P~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ 242 (1146)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1146)
T ss_pred ECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccE
Confidence 99999999999999999999999999888888888889999999999899999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcC
Q 009323 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (537)
Q Consensus 308 ~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G 387 (537)
++.+|++.++++.+++|.+.+.++++++||.|++|+||+++++|++||+|||||+|++|+++++++|+|++++++++++|
T Consensus 243 ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G 322 (1146)
T PRK12999 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEG 322 (1146)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCC
Confidence 99999988999999999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred CCCCC------CCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeecc-CCCccCCCCCcccEEEEE
Q 009323 388 GKLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVY-PDYVVPPSYDSLLGKLIV 460 (537)
Q Consensus 388 ~~l~~------~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~-~G~~v~~~~ds~ig~vi~ 460 (537)
.++.. .+..+..+|++++|||++|||.+.|.|++|+|+.+..|+++++|+|.++. .|..|+++|||+++|||+
T Consensus 323 ~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~ 402 (1146)
T PRK12999 323 ATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTA 402 (1146)
T ss_pred CCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEE
Confidence 99865 34566778999999999999999999999999999999999999998875 899999999999999999
Q ss_pred EcCCHHHHHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchhhcc
Q 009323 461 WAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 518 (537)
Q Consensus 461 ~g~~~~ea~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 518 (537)
+|+|+++|++++.+||++++|+|++||++||+.+|.||+|++|+++|+||+++.+.+.
T Consensus 403 ~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~l~~ 460 (1146)
T PRK12999 403 WGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTTSFIDETPELFD 460 (1146)
T ss_pred EcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccchhhhcChhhhh
Confidence 9999999999999999999999999999999999999999999999999999855553
No 13
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=2.2e-80 Score=660.95 Aligned_cols=446 Identities=66% Similarity=1.083 Sum_probs=421.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|||||||+|+|+++++++++||++|++|++++++.+.++++.++||+.+.+++....++|.|.+.|+++|+++++|+|+|
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 58999999999999999999999999999999888888899999999999877777788999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
++|+++|++.+++.++++|++++||+++++..++||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~ 160 (449)
T TIGR00514 81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160 (449)
T ss_pred CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998544678999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|++++++.+|+.++++.+.+.....+++..++||+||+|++|++++++.|++|+++++++++|++++++++..+
T Consensus 161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (449)
T TIGR00514 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 (449)
T ss_pred CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence 99999999999999999999998877665666778899999999989999999999889999999999998888889999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
..|++.++++..++|.+.+.++++++||.|++|+||+++++|++||+|||||+++++++++.++|+|++++++++++|.+
T Consensus 241 ~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~ 320 (449)
T TIGR00514 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEP 320 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCCC
Confidence 99987899999999999999999999999999999999977889999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++..+..+..+++++++|++++|+.+.|.|++|.++.+..+..+|+++++++.+|+.|+++||+++|+||++|+|++||+
T Consensus 321 l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 400 (449)
T TIGR00514 321 LSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAI 400 (449)
T ss_pred CCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHH
Confidence 98766666778999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchh
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 515 (537)
+++.+|+++++|+|++||++||+.|+.|++|.+|+++|+||++++.
T Consensus 401 ~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 401 ARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 9999999999999999999999999999999999999999998753
No 14
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=1.5e-77 Score=639.06 Aligned_cols=443 Identities=55% Similarity=0.929 Sum_probs=414.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.+|||||+|+|+++++++++||++|++|++++++.|.++++.++||+.+.+++....++|.|.+.|+++|+++++|+|+|
T Consensus 3 ~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 3 EIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999999999999999999999999999999999987777789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
++|+++|+..+++.++.+|++++||+++++..++||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 83 g~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~ 162 (445)
T PRK08462 83 GYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162 (445)
T ss_pred CCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999997545688999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|+++|++.+||.++++.+..+....++++.+++|+||+|++|++++++.+.+|+++++++++|+.++++++..+
T Consensus 163 ~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~ 242 (445)
T PRK08462 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIE 242 (445)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEE
Confidence 99999999999999999999988877666667777899999999879999999999889999999999999888888988
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
.+|+..++++..+++.+.+.++++++||.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|.+
T Consensus 243 ~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~ 322 (445)
T PRK08462 243 ESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEE 322 (445)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCCCC
Confidence 89987799999999999999999999999999999999977789999999999999999999999999999999999998
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++.. ......++++.+|+++++|. .|.|.+|.+..+..|....++++.+...|+.++++|++++|+||++|+|+++|+
T Consensus 323 l~~~-~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~ 400 (445)
T PRK08462 323 LPSQ-ESIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAI 400 (445)
T ss_pred cccc-cccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHH
Confidence 8633 33456799999999999985 589999999998777778899999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccch
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 514 (537)
+++.++++.++|+|++||++||+.||.||+|++|.++|+||++|.
T Consensus 401 ~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 401 AKMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred HHHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 999999999999999999999999999999999999999999874
No 15
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2.6e-77 Score=638.85 Aligned_cols=446 Identities=61% Similarity=1.020 Sum_probs=420.0
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|||||||+|+|+++.+++++|+++|+++++++++.|..+++.++||+.+.+++....++|.|.+.++++|++.++|+|+|
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 58999999999999999999999999999998888888888999999998877777788999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
++|+++|+..++..++++|++++||+++++..++||..+|++|+++|||+|+++...+.+.+++.+++++++||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~ 160 (451)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (451)
T ss_pred CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999989999999999999999999999999999999999999999997534678999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|+++|++.+|+.++++.+..++...+++..+++|+||+|++|++++++.|++|++++++.++|+.++++++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (451)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence 99999999999999999999999887766667778899999999888999999999999999999999988888888999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
..|++.++++..+++.+.+.++++++||.|++|+||+++++|++||+|||||+++++++++.++|+|+++.++++++|.+
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~ 320 (451)
T PRK08591 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEP 320 (451)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCCC
Confidence 99987799999999999999999999999999999999977889999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++........+|+++++|+++++|...|.|++|.+..+..|..++++++.++.+|+.+++++|+++|+||++|+|+++++
T Consensus 321 l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~ 400 (451)
T PRK08591 321 LSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAI 400 (451)
T ss_pred CCCcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHH
Confidence 87665556678999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccchh
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 515 (537)
+++.++++.++|+|++||++||+.||.||+|++|+++|+||+++++
T Consensus 401 ~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 446 (451)
T PRK08591 401 ARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLA 446 (451)
T ss_pred HHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCcccHHHHhhhh
Confidence 9999999999999999999999999999999999999999998854
No 16
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=1.3e-72 Score=650.69 Aligned_cols=440 Identities=48% Similarity=0.804 Sum_probs=415.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+|||||+|+|+++++++++|+++|+++++++++++..+++..+||+.+++++.+..++|.|.+.|+++|++.++|+|||+
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 58999999999999999999999999999999999999999999999999887788899999999999999999999999
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~ 230 (537)
+||++|+..++..+++.|++++||++++++.++||..+|++|+++|||+++++ ..++|.+++.++++++||||||||..
T Consensus 81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~ 159 (1201)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTA 159 (1201)
T ss_pred CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECC
Confidence 99999999999999999999999999999999999999999999999998854 56789999999999999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEE
Q 009323 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~ 310 (537)
|+||+|+++|++.+|+.++++.+.+.+...|++..++||+||++++|++++++.|++|+++.+++++|++++++++..++
T Consensus 160 ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee 239 (1201)
T TIGR02712 160 GGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE 239 (1201)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEE
Confidence 99999999999999999999999877776777788999999997799999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 311 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 311 ~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~-~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
+|++.++++.+++|.+.+.+++++++|.|++++||++++ +|++||||||||++++|++++.++|+|++++++++++|.+
T Consensus 240 ~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~~ 319 (1201)
T TIGR02712 240 TPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGEL 319 (1201)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCCC
Confidence 999889999999999999999999999999999999984 5779999999999999999999999999999999999998
Q ss_pred CCCCCCcc--ccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHH
Q 009323 390 LRYKQEDI--VLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (537)
Q Consensus 390 l~~~~~~~--~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~e 467 (537)
+++.+... ...|+++++|+|+|+|.++|.|++|.++.+..|. +++++.++..|++|.++||+++|+||++|+|+++
T Consensus 320 ~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~--~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~e 397 (1201)
T TIGR02712 320 PDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPD--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDRED 397 (1201)
T ss_pred CCccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCC--eEEEeceecCCCEECCccCCCeEEEEEEECCHHH
Confidence 87654333 4579999999999999999999999998876653 5899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccc
Q 009323 468 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKH 513 (537)
Q Consensus 468 a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 513 (537)
|++++.+++++++|.|+.||++||+.|+.+++|++|+++|+||++.
T Consensus 398 A~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 398 AILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred HHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 9999999999999999999999999999999999999999999764
No 17
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.5e-67 Score=563.73 Aligned_cols=444 Identities=51% Similarity=0.827 Sum_probs=404.4
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|+|+.+.+++++|+++|+++++++++.+..+.+.++||+.+.+++....++|.|.+.+++++++.++|+|+|
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p 80 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999999999999999998888888888889999998876566678999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
++++++|+..++..++.+|++++||+++++..++||..+|++|+++|||+|++....+.+.+++.+++++++||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~ 160 (450)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS 160 (450)
T ss_pred CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999888899999999999999999999999999999999999999996323558899999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|+||+|+++|++.+|+.++++.+.......+++..+++|+||+|++|++++++.+++|+++.+..+++..++.+++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (450)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (450)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence 99999999999999999999998765544445667899999999988999999999889999888888877777777888
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
.+|++.+++++.+++.+++.++++++||.|++|+||+++++|++||+|||||+++++++++.++|+|++++++++++|.+
T Consensus 241 ~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~ 320 (450)
T PRK06111 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEK 320 (450)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCCC
Confidence 88888789999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
+++.+......+.++..+++++++. .+.|.+|.++.+..+..++++++.++..|++|.+.+++++|+|+++|+|+++|.
T Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 399 (450)
T PRK06111 321 LSFTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAI 399 (450)
T ss_pred CCCccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHH
Confidence 8765554556688999999998764 567889999887656667789999999999999988999999999999999999
Q ss_pred HHHHHhhhcceEeeeccCHHHHHHhcCCccccCCcccccccccch
Q 009323 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (537)
Q Consensus 470 ~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 514 (537)
+++.++++.++++|++||+++|+.+|.+++|++|.++|+||++.+
T Consensus 400 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (450)
T PRK06111 400 SRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAGGYTTGFLTKQL 444 (450)
T ss_pred HHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCCcccchHHhhhh
Confidence 999999999999999999999999999999999999999997763
No 18
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-69 Score=585.82 Aligned_cols=449 Identities=36% Similarity=0.574 Sum_probs=411.8
Q ss_pred CcCCCCCcEEEEEcCcHHHHHHHHHHHHcCCC---------EEEEecCCC--CCChhhhccCEEEEcCCCCCCCCCCCHH
Q 009323 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIP---------CVAVYSTID--KDALHVKLADESVCIGEAPSSQSYLLIP 133 (537)
Q Consensus 65 ~~~~~~~~kvLi~g~g~~a~~ii~aa~~~G~~---------vv~v~~~~d--~~~~~~~~ad~~~~i~~~~~~~~~~~~~ 133 (537)
.++.+.++||||+|.|.-|++.+++.|+.-|+ .++..+..| .++.+.++||+++.++..+..+.|.|.+
T Consensus 48 ~gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVd 127 (2196)
T KOG0368|consen 48 LGGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVD 127 (2196)
T ss_pred hcCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHH
Confidence 45667799999999999999999999986443 333333332 6778899999999998889999999999
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC---------
Q 009323 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD--------- 204 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~--------- 204 (537)
.|+++|++..+|+|++|||..|||+.+.+.+...||.|+||+..+|..++||....-+++.+|+|+.|++.
T Consensus 128 lIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~ 207 (2196)
T KOG0368|consen 128 LIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIE 207 (2196)
T ss_pred HHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred ---------------ccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 009323 205 ---------------GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 269 (537)
Q Consensus 205 ---------------~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvE 269 (537)
.-+.|.+|..+.++.+|||+|||++.||||+|++.|++.+|+...|+++..+ +++.++++.
T Consensus 208 ~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlM 283 (2196)
T KOG0368|consen 208 DKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLM 283 (2196)
T ss_pred ccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeee
Confidence 1256788899999999999999999999999999999999999999999877 456899999
Q ss_pred eccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-
Q 009323 270 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD- 348 (537)
Q Consensus 270 e~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~- 348 (537)
+...++||++||.++|.+|+++.+..|||++||+|||++|++|+...+.+..++|++.|.++++.+||.++++||+++.
T Consensus 284 K~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp 363 (2196)
T KOG0368|consen 284 KLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSP 363 (2196)
T ss_pred ecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEec
Confidence 9999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCCCCCC---------------------CCccccceeEEEEE
Q 009323 349 ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK---------------------QEDIVLQGHSIECR 407 (537)
Q Consensus 349 ~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~l~~~---------------------~~~~~~~g~ai~~r 407 (537)
++|+|||||.|||+|++||.||+++|+||...|+++|+|.|+.-. +..+.++||.+.||
T Consensus 364 ~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~R 443 (2196)
T KOG0368|consen 364 DDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAAR 443 (2196)
T ss_pred CCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEE
Confidence 589999999999999999999999999999999999999998311 11235689999999
Q ss_pred EeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEee-ecc
Q 009323 408 INAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPT 486 (537)
Q Consensus 408 i~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g-~~t 486 (537)
|+.|||+.+|+|+.|+|.++..++...+.-.+.+..|..|..+-||.+||++++|+||++|+..|--||+++.|+| ++|
T Consensus 444 ITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT 523 (2196)
T KOG0368|consen 444 ITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRT 523 (2196)
T ss_pred eeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCc
Confidence 9999999999999999999977766676655677788889999999999999999999999999999999999999 999
Q ss_pred CHHHHHHhcCCccccCCcccccccccchhhc
Q 009323 487 TIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (537)
Q Consensus 487 n~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~ 517 (537)
+++||..||..++|.++++||+||++.+..-
T Consensus 524 ~VeYLI~LLet~dF~~N~i~TgWLD~~Ia~k 554 (2196)
T KOG0368|consen 524 TVEYLIDLLETEDFESNKIDTGWLDKRIAMK 554 (2196)
T ss_pred hHHHHHHHHHhhhhhhccCcchhHHHHHHHH
Confidence 9999999999999999999999999987653
No 19
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=1.2e-44 Score=379.03 Aligned_cols=375 Identities=18% Similarity=0.217 Sum_probs=295.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g 152 (537)
||||+|+|..+..++++|+++|++|++++.+ ++++...++|+.+.++ +.|.+.+.++++++++|+|+|..+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~--~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRY--ANAPAMQVAHRSYVIN-------MLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCC--CCCchhhhCceEEEcC-------CCCHHHHHHHHHHhCCCEEEeccC
Confidence 6999999999999999999999999999654 4556678999988753 778999999999999999998765
Q ss_pred cccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHH-HHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCC
Q 009323 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (537)
Q Consensus 153 ~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l-~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g 231 (537)
... ......+++.|+++ .|+++++.++.||..+|+++ +++|||+|++ ..+.+.+++.++++++|||+|+||..|
T Consensus 72 ~v~--~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~VvKP~~g 146 (380)
T TIGR01142 72 AIA--TDALFELEKEGYFV-VPNARATKLTMNREGIRRLAAEELGLPTSRY--MFADSLDELREAVEKIGYPCVVKPVMS 146 (380)
T ss_pred ccC--HHHHHHHHhcCCee-CCCHHHHHHhhCHHHHHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 432 23345678889764 58999999999999999986 8999999998 678999999999999999999999999
Q ss_pred CCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEEc
Q 009323 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311 (537)
Q Consensus 232 ~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~~ 311 (537)
+||+|+++|++.+|+..+++.+...+. ..++.+++|+||++..|+++.++.+.+|++....... .............
T Consensus 147 ~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~ 223 (380)
T TIGR01142 147 SSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPIG-HRQIDGDYHESWQ 223 (380)
T ss_pred cCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-eEEeCCeeEEEEC
Confidence 999999999999999999988754321 1235899999999868999998877677755432211 1112222223456
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCCCC
Q 009323 312 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (537)
Q Consensus 312 p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~l~ 391 (537)
|+. ++++..+++.+.+.+++++||+.|++|+||++++++ +||+|||||++++...+....|+|+++++++.++|.+++
T Consensus 224 p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~-~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~ 301 (380)
T TIGR01142 224 PQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDE-VIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPIP 301 (380)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCc-EEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCCC
Confidence 775 899999999999999999999999999999999765 999999999998754444445999999999999999875
Q ss_pred CCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEE----EcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHH
Q 009323 392 YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAY----LPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (537)
Q Consensus 392 ~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~----~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~e 467 (537)
... ..+.+....+.++.. |.+..+ .....+++++..+..+|... ..++|+|++.|+|.++
T Consensus 302 ~~~----~~~~~~~~~i~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~k~~~~~----~~~~G~v~~~~~s~~~ 365 (380)
T TIGR01142 302 GIP----QLGPAASAVIKAKVT--------GYSPAFRGLEKALSVPNTQVRLFGKPEAYV----GRRLGVALATAKSVEA 365 (380)
T ss_pred Ccc----ccCCceEEEEEcccc--------cccchhhHHHHHHcCCCCEEEECCCCcCCC----CCcCEEEEEecCCHHH
Confidence 332 234455556665322 322221 12234677776666666442 3469999999999999
Q ss_pred HHHHHHHhhhcceEe
Q 009323 468 AIERMKRALNDTIIT 482 (537)
Q Consensus 468 a~~~~~~al~~~~i~ 482 (537)
+.++++++.+.++|+
T Consensus 366 ~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 366 ARERAEEVAHAVEVR 380 (380)
T ss_pred HHHHHHHHHhhccCC
Confidence 999999999988763
No 20
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=7.4e-45 Score=394.16 Aligned_cols=383 Identities=20% Similarity=0.236 Sum_probs=305.5
Q ss_pred cCCCCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009323 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 66 ~~~~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 145 (537)
+..++.|||+|+|+|..+..++++|+++|+++++++. +++++..+++|+.+.. +|.|.+.+.+++++ +|
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~--~~~apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~d 85 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDP--LEDCPASSVAARHVVG-------SFDDRAAVREFAKR--CD 85 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC--CCCCchhhhCceeeeC-------CCCCHHHHHHHHHH--CC
Confidence 3446678999999999999999999999999999954 4556778899988864 48899999999987 78
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEE
Q 009323 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225 (537)
Q Consensus 146 ~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~Pvv 225 (537)
+|....+. -+....+.++..|+++ +|+++++..++||..+|++|+++|||+|++ ..+.+.+++.++.+++|||+|
T Consensus 86 vIt~e~e~--v~~~~l~~le~~gi~v-~ps~~al~i~~DK~~~K~~l~~~GIptp~~--~~v~~~~el~~~~~~ig~P~V 160 (577)
T PLN02948 86 VLTVEIEH--VDVDTLEALEKQGVDV-QPKSSTIRIIQDKYAQKVHFSKHGIPLPEF--MEIDDLESAEKAGDLFGYPLM 160 (577)
T ss_pred EEEEecCC--CCHHHHHHHHhcCCcc-CCCHHHHHHhcCHHHHHHHHHHCCcCCCCe--EEeCCHHHHHHHHHhcCCcEE
Confidence 88743221 1245568889999874 799999999999999999999999999998 678899999999999999999
Q ss_pred EEecCCC-CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeeccccccc
Q 009323 226 IKATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRN 304 (537)
Q Consensus 226 vKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~ 304 (537)
|||..++ +|+|++++++.+|+.++++.+... +..+++|+||++.+|++|.++.+.+|++..+... +..+...
T Consensus 161 vKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~------~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~~-E~~~~~~ 233 (577)
T PLN02948 161 LKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF------ERGLYAEKWAPFVKELAVMVARSRDGSTRCYPVV-ETIHKDN 233 (577)
T ss_pred EEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC------CCcEEEEecCCCCeEEEEEEEECCCCCEEEecCc-ccEEECC
Confidence 9999877 799999999999999999876421 3689999999998999999999888887765432 2223333
Q ss_pred ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHH
Q 009323 305 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 305 ~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~ 384 (537)
.......|+. ++++..+++.+++.+++++|++.|++++||+++++|++||+|||||++++..++...+++|+++.+++.
T Consensus 234 ~~~~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa 312 (577)
T PLN02948 234 ICHVVEAPAN-VPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRA 312 (577)
T ss_pred eeEEEEECCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHH
Confidence 3344457885 999999999999999999999999999999999889999999999999865566678999999999999
Q ss_pred HcCCCCCCCCCccccceeEEEEEEeeCCCC-CCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcC
Q 009323 385 AMGGKLRYKQEDIVLQGHSIECRINAEDPF-KNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAP 463 (537)
Q Consensus 385 a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~-~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~ 463 (537)
++|.+++... ....++++.++..++.. .++.+....+... ...|++++.++..++.+. .+++|||+++|+
T Consensus 313 ~lGlpl~~~~---~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~--~~~p~~~v~~ygk~~~r~----~rkmGhV~~~g~ 383 (577)
T PLN02948 313 VLGLPLGDTS---MKVPAAIMYNILGEDEGEAGFRLAHQLMGRA--LNIPGASVHWYGKPEMRK----QRKMGHITVVGP 383 (577)
T ss_pred HcCCCCCCcc---ccCCcEEEEEEeccccccccccchhhHHHHH--hhCCCCEEEEecCCCCCC----CCeeEEEEEecC
Confidence 9999986542 22345788888876432 1222221111111 123566665555555332 357999999999
Q ss_pred CHHHHHHHHHHhhhcceE
Q 009323 464 TREKAIERMKRALNDTII 481 (537)
Q Consensus 464 ~~~ea~~~~~~al~~~~i 481 (537)
|.+++.++++.+++.+.+
T Consensus 384 ~~~e~~~~~~~~~~~~~~ 401 (577)
T PLN02948 384 SAAEVEARLDQLLAEESA 401 (577)
T ss_pred CHHHHHHHHHHHHhhhcc
Confidence 999999999999987543
No 21
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.6e-44 Score=417.48 Aligned_cols=412 Identities=23% Similarity=0.317 Sum_probs=325.6
Q ss_pred CcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
.|||||+|+|.+ +..++++|+++|++|++++++++....+..++|+.+..+ .+.+.+.+++
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p--------~~~~~v~~ii 77 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKII 77 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECC--------CCHHHHHHHH
Confidence 789999999985 467999999999999999988877777788999988642 3678999999
Q ss_pred HHcCCCEEEeCCCcc-----cccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHH
Q 009323 140 ISRGCTMLHPGYGFL-----AENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (537)
Q Consensus 140 ~~~~~d~V~p~~g~~-----se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~ 214 (537)
+++++|+|+|++|.. ......+..++.+|++++|++++++..+.||..+|++|+++|+|+|++ ..+.+.+++.
T Consensus 78 ~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~~ 155 (1050)
T TIGR01369 78 EKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPES--EIAHSVEEAL 155 (1050)
T ss_pred HHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCe--eecCCHHHHH
Confidence 999999999997641 122234567899999999999999999999999999999999999999 7889999999
Q ss_pred HHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEe
Q 009323 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (537)
Q Consensus 215 ~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~ 294 (537)
++++++|||+||||..|.||+|+.++++.+|+.+++......+ ...+++||+||+|++|++++++.|..|+++.+.
T Consensus 156 ~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~ 231 (1050)
T TIGR01369 156 AAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCITVC 231 (1050)
T ss_pred HHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEEEEe
Confidence 9999999999999999999999999999999999988766432 125899999999989999999999888888764
Q ss_pred eeecc--cccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEecCCCCccccchh
Q 009323 295 ERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEM 371 (537)
Q Consensus 295 ~r~~~--~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~-~g~~~~lEiNpR~~g~~~~~~~ 371 (537)
..+.. ...+.......+|+..++++..+++.+.+.+++++||+.|.+++||++++ +|++||+|||||+++++.++++
T Consensus 232 ~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s~ 311 (1050)
T TIGR01369 232 NMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSRSSALASK 311 (1050)
T ss_pred eceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCcchhhhhH
Confidence 33211 11123445566888778999999999999999999999999999999995 5789999999999999889999
Q ss_pred hcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCC
Q 009323 372 ISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSY 451 (537)
Q Consensus 372 ~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ 451 (537)
++|+|+.+..+++++|.++.....++. | +++ ..|.|+.+.+..-. |.|.++.+.....++...+
T Consensus 312 atG~pl~~~~~~~alG~~l~~~~n~i~--g---------~~~-~~~~p~~~~~~~k~----p~~~~~~~~~~~~~~~~~~ 375 (1050)
T TIGR01369 312 ATGYPIAKVAAKLAVGYGLDELKNPVT--G---------TTP-ASFEPSLDYVVVKI----PRWDFDKFAGVDRKLGTQM 375 (1050)
T ss_pred HhCCCHHHHHHHHHcCCCchhhcCCCc--C---------cCc-cccCcCCCeEEEEE----EeCCCCCCCcccCCcCccc
Confidence 999999999999999998864432222 2 233 35778877754211 2222222222233333333
Q ss_pred CcccEEEEEEcCCHHHHHHHHHHhhhcceEeeec------cCHHHHHHhcCCc----------cccCC----------cc
Q 009323 452 DSLLGKLIVWAPTREKAIERMKRALNDTIITGVP------TTIEYHKLILDVE----------DFKNG----------KV 505 (537)
Q Consensus 452 ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~------tn~~~~~~~~~~~----------~f~~~----------~~ 505 (537)
.+ +|+|+++|+|++||++|+.++++.= ..|.. .+-+-+...|.|| +|+.| ++
T Consensus 376 k~-~G~v~~~g~~~~ea~~ka~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i 453 (1050)
T TIGR01369 376 KS-VGEVMAIGRTFEEALQKALRSLEIG-ATGFDLPDREVEPDEDLWRALKKPTDRRIFAIAEALRRGVSVDEIHELTKI 453 (1050)
T ss_pred ce-eeEEEEECCCHHHHHHHHHHHhccC-CCCCCccccCCCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCC
Confidence 33 9999999999999999999999763 23321 1223455555555 56666 77
Q ss_pred cccccccch
Q 009323 506 DTAFIPKHE 514 (537)
Q Consensus 506 ~t~~~~~~~ 514 (537)
|-+||.+..
T Consensus 454 ~~~~~~~~~ 462 (1050)
T TIGR01369 454 DRWFLHKIK 462 (1050)
T ss_pred CHHHHHHHH
Confidence 888887643
No 22
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=8.5e-44 Score=370.32 Aligned_cols=364 Identities=20% Similarity=0.318 Sum_probs=292.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+++|+|+|+|..+..++.+|+++|++|++++ ++++++...++|+.+.. +|.|.+.+.++++ .+|+|.+
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d--~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a~--~~dvit~- 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLD--PDPDSPAAQVADEVIVA-------DYDDVAALRELAE--QCDVITY- 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEe--CCCCCchhHhCceEEec-------CCCCHHHHHHHHh--cCCEEEe-
Confidence 4789999999999999999999999999995 45556778889998865 4889999999997 5898874
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~ 230 (537)
++..-.....+.+++. ..++|+++++..++||..+|++|+++|||+|++ ..+.+.+++.++++++|||+|+||..
T Consensus 70 -e~e~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~--~~v~s~~~l~~~~~~~g~P~vlKp~~ 144 (372)
T PRK06019 70 -EFENVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPF--AVVDSAEDLEAALADLGLPAVLKTRR 144 (372)
T ss_pred -CcCCCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCcEEEEeCC
Confidence 3322234445555555 336799999999999999999999999999999 78899999999999999999999998
Q ss_pred CC-CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 231 GG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 231 g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
|+ +|+|++++++.+|+.++++.+ +..++++|+||++.+|+++.++.+.+|+++.+...+. .+........
T Consensus 145 ~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e~-~~~~gi~~~~ 215 (372)
T PRK06019 145 GGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVEN-VHRNGILRTS 215 (372)
T ss_pred CCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCccc-EEeCCEEEEE
Confidence 65 899999999999999988865 2468999999997699999999988888877654332 2233333334
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
..|+. +++++.+++.+++.+++++|||.|++++||+++++|++||+|||||++++..++..++++|+++.+++.++|.+
T Consensus 216 ~~pa~-~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Glp 294 (372)
T PRK06019 216 IAPAR-ISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGLP 294 (372)
T ss_pred ECCCC-CCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCCC
Confidence 67775 89999999999999999999999999999999988899999999999998778888999999999999999998
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++. ......+++..+..++. . ..+ +.. ....|++++ ++|......+ ++.+|||.+.|+|.+++.
T Consensus 295 l~~----~~~~~~~~m~nilg~~~---~--~~~-~~~--~~~~~~~~~--~~ygk~~~~~--~rk~Ghv~~~~~~~~~~~ 358 (372)
T PRK06019 295 LGT----TRLLSPAVMVNLLGDDW---L--EPR-WDA--LLALPGAHL--HLYGKAEARP--GRKMGHVTVLGDDVEALL 358 (372)
T ss_pred CCC----ccccCceEEEEEECchh---h--hhH-HHH--HhhCCCCEE--EECCCCCCCC--CCceEEEEeecCCHHHHH
Confidence 862 23345688888886531 0 001 111 112356654 4443323333 557999999999999999
Q ss_pred HHHHHhhh
Q 009323 470 ERMKRALN 477 (537)
Q Consensus 470 ~~~~~al~ 477 (537)
++++.+..
T Consensus 359 ~~~~~~~~ 366 (372)
T PRK06019 359 AKLEALAP 366 (372)
T ss_pred HHHHHHHh
Confidence 99998876
No 23
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=5.5e-44 Score=411.48 Aligned_cols=412 Identities=21% Similarity=0.309 Sum_probs=323.1
Q ss_pred CcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
+|||||+|+|++ +..++++++++|++|++++++++.......++|+.+. . ..+.+.+.+++
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi-~-------p~~~e~v~~ii 94 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYI-A-------PMTPELVEQVI 94 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEe-C-------CCCHHHHHHHH
Confidence 789999999986 5679999999999999998877655556678999764 3 34678899999
Q ss_pred HHcCCCEEEeCCCccc-ccH--HH--HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHH
Q 009323 140 ISRGCTMLHPGYGFLA-ENA--VF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (537)
Q Consensus 140 ~~~~~d~V~p~~g~~s-e~~--~~--a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~ 214 (537)
+++++|+|+|++|... ++. .+ ...++.+|++++|++++++..+.||..+|++|+++|+|+|++ ..+.+.+++.
T Consensus 95 ~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~--~~v~s~eea~ 172 (1102)
T PLN02735 95 AKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPS--GIATTLDECF 172 (1102)
T ss_pred HHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCe--eEeCCHHHHH
Confidence 9999999999875322 221 11 245788999999999999999999999999999999999998 6788999999
Q ss_pred HHHHHhC-CcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEE
Q 009323 215 KLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 215 ~~~~~ig-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~ 293 (537)
++++++| ||+||||+.+.||+|+.+|++.+||.++++.+...+ .+++++||+||.|++|++++++.|..|+++.+
T Consensus 173 ~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s----~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v 248 (1102)
T PLN02735 173 EIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAAS----ITSQVLVEKSLLGWKEYELEVMRDLADNVVII 248 (1102)
T ss_pred HHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEecCCCeEEEEEEEEcCCCCEEEE
Confidence 9999999 999999999999999999999999999998765322 25789999999998899999999877787665
Q ss_pred eeeecc--cccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEe-CCCCEEEEEEecCCCCccccc
Q 009323 294 GERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVT 369 (537)
Q Consensus 294 ~~r~~~--~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~-G~~~vEf~~~-~~g~~~~lEiNpR~~g~~~~~ 369 (537)
...+.. ...+.......+|+..++++..++|.+++.+++++||+. |.+++||+++ .+|++||+|||||+++++.+.
T Consensus 249 ~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l~ 328 (1102)
T PLN02735 249 CSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALA 328 (1102)
T ss_pred eeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCCCcchhh
Confidence 433210 111223455667887799999999999999999999995 9999999999 588999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCC
Q 009323 370 EMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPP 449 (537)
Q Consensus 370 ~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~ 449 (537)
++++|+|+.+.++++++|.++...+.++.... + ..|.|+.+.+.... | -|.++..-.....+.+
T Consensus 329 s~atG~~~a~~~~klalG~~l~~~~~~~~~~~-----------~-a~~ep~~d~~~~k~-p---~~~f~~f~~~~~~l~~ 392 (1102)
T PLN02735 329 SKATGFPIAKMAAKLSVGYTLDQIPNDITLKT-----------P-ASFEPSIDYVVTKI-P---RFAFEKFPGSQPILTT 392 (1102)
T ss_pred hhhhCCCHHHHHHHHHCCCChhhhcccccccc-----------c-hheeecCCcEEEEc-c---cCCcccccCCCcccce
Confidence 99999999999999999999865433222111 1 35777755554322 2 2233323334455666
Q ss_pred CCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeeec--------cCHHHHHHhcCCc----------cccCC--------
Q 009323 450 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP--------TTIEYHKLILDVE----------DFKNG-------- 503 (537)
Q Consensus 450 ~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~--------tn~~~~~~~~~~~----------~f~~~-------- 503 (537)
...| .|.|++.|+|++||++|+.+.++. ...|.. .+.+-+...|.|| +|+.|
T Consensus 393 ~mks-~ge~m~~gr~~~ea~~ka~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~ 470 (1102)
T PLN02735 393 QMKS-VGEAMALGRTFQESFQKALRSLET-GFSGWGCAKVKELDWDWEQLKYKLRVPNPDRIHAIYAAMKKGMTVDEIHE 470 (1102)
T ss_pred eeee-cceEEEecCCHHHHHHHHHHHhcC-CCCCCCccccccccCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHH
Confidence 6666 899999999999999999998864 233331 2223455555555 56666
Q ss_pred --cccccccccch
Q 009323 504 --KVDTAFIPKHE 514 (537)
Q Consensus 504 --~~~t~~~~~~~ 514 (537)
++|-+||.+..
T Consensus 471 ~t~id~~f~~~~~ 483 (1102)
T PLN02735 471 LTFIDPWFLTQLK 483 (1102)
T ss_pred HHCCCHHHHHHHH
Confidence 67788887543
No 24
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=6.8e-44 Score=410.72 Aligned_cols=330 Identities=19% Similarity=0.278 Sum_probs=274.5
Q ss_pred CcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
.+||||+|+|+. ++.++++||++|+++++++++++..+.+..++|+.++. +.+.+.+++++
T Consensus 574 ~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~--------pl~~e~vl~i~ 645 (1102)
T PLN02735 574 KKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVI 645 (1102)
T ss_pred CceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEE--------eCCHHHHHHHH
Confidence 589999999984 46699999999999999999999988889999999975 67899999999
Q ss_pred HHcCCCEEEeCCCcccc-------------cHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcc
Q 009323 140 ISRGCTMLHPGYGFLAE-------------NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL 206 (537)
Q Consensus 140 ~~~~~d~V~p~~g~~se-------------~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~ 206 (537)
++.++|+|+|++|-... ++.|++ +...|+.++||+++++..+.||..+|++|+++|||+|++ ..
T Consensus 646 ~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~--~~ 722 (1102)
T PLN02735 646 DLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKG--GI 722 (1102)
T ss_pred HHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCe--eE
Confidence 99999999999874222 111222 223489999999999999999999999999999999998 67
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeC
Q 009323 207 LQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 286 (537)
Q Consensus 207 ~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~ 286 (537)
+.+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+.+. +++.+++||+||++++|++|+++.|+
T Consensus 723 v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~ 798 (1102)
T PLN02735 723 ARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALADS 798 (1102)
T ss_pred eCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEECC
Confidence 88999999999999999999999999999999999999999999988654 23468999999986699999999998
Q ss_pred CCcEEEEeeeecccc--cccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCC
Q 009323 287 YGNVVHFGERDCSIQ--RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQV 364 (537)
Q Consensus 287 ~g~v~~~~~r~~~~~--~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g 364 (537)
+|+++.....+.... .+........|++.++++..+++.+++.+++++||+.|++++||+++++|++||+|||||+++
T Consensus 799 ~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~ 878 (1102)
T PLN02735 799 EGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASR 878 (1102)
T ss_pred CCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCc
Confidence 888876544332110 111112234577679999999999999999999999999999999987788999999999999
Q ss_pred ccccchhhcCCCHHHHHHHHHcCCCCCC---CCCccccceeEEEEEEeeCCCCCCCCC
Q 009323 365 EHPVTEMISSVDLIEEQIHVAMGGKLRY---KQEDIVLQGHSIECRINAEDPFKNFRP 419 (537)
Q Consensus 365 ~~~~~~~~~Gidl~~~~i~~a~G~~l~~---~~~~~~~~g~ai~~ri~ae~~~~~f~p 419 (537)
+++++++++|+|+++.++++++|++|.. .+. ......++.++++ |...|.+
T Consensus 879 t~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~-~~~~~~~vk~~vf---~~~~~~~ 932 (1102)
T PLN02735 879 TVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEE-VIPAHVSVKEAVL---PFDKFQG 932 (1102)
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCChhhcCCCcc-cccCeEEEEeccC---ChhhCCC
Confidence 9999999999999999999999999642 222 2224456777764 4444444
No 25
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=1.7e-42 Score=364.56 Aligned_cols=382 Identities=19% Similarity=0.232 Sum_probs=289.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.|+|||+|+|..+..++++++++|+++++++.++ ..+...++|..+.++ +.|.+.++++++++++|+|+|.
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~--~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYA--NAPAMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVPE 82 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC--CCchHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEEe
Confidence 3689999999999999999999999999996554 445567888877653 6788999999999999999987
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHH-HHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l-~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
.+... ......+++.|++++ |+++++.+++||..+|+++ +++|||+|++ ..++|.+++.+++++++||+|+||.
T Consensus 83 ~e~~~--~~~~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~--~~~~s~~~l~~~~~~~g~P~VvKP~ 157 (395)
T PRK09288 83 IEAIA--TDALVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPY--RFADSLEELRAAVEEIGYPCVVKPV 157 (395)
T ss_pred eCcCC--HHHHHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCc--eEECCHHHHHHHHHhcCCCEEEEeC
Confidence 65321 233445667788754 8999999999999999999 4799999998 7899999999999999999999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 230 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
.|++|+|+++|++.+|+.++++.+...+. -.+..++|||||++..|+++.++.+..|...++...+. ..........
T Consensus 158 ~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 234 (395)
T PRK09288 158 MSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIGH-RQEDGDYRES 234 (395)
T ss_pred CCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCccc-EEECCEEEEE
Confidence 99999999999999999999988754321 01368999999995589999999886655555433211 1111222233
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
..|+. ++++..+++.+++.+++++||+.|++|+||++++++ +||+|+|||++++...+....|+|+++++++.++|.+
T Consensus 235 ~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~-~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 312 (395)
T PRK09288 235 WQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDE-VYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGLP 312 (395)
T ss_pred ECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCe-EEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCCC
Confidence 45765 899999999999999999999999999999999775 9999999999887544444459999999999999987
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++.. ...+.+..+.++++.... .....|... ....+++++..+..+ ......++|+|++.|+|.++|.
T Consensus 313 ~~~~----~~~~~~~~~~~~~~~~~~-~~~i~~~~~---~~~~~g~~~~~~~k~----~~~~~~~lG~v~~~g~~~~~a~ 380 (395)
T PRK09288 313 IPDI----RLYSPAASAVILAEGESA-NPSFDGLAE---ALAVPGTDVRLFGKP----EIRGGRRMGVALATGEDVEEAR 380 (395)
T ss_pred CCcc----cccCCceeEEEecccccc-ccchhhHHH---HhcCCCCEEEEecCC----CCCCCCeeEEEEeecCCHHHHH
Confidence 6322 123334455555542211 000011111 112355554332211 1222456999999999999999
Q ss_pred HHHHHhhhcceEee
Q 009323 470 ERMKRALNDTIITG 483 (537)
Q Consensus 470 ~~~~~al~~~~i~g 483 (537)
++++++++.++++|
T Consensus 381 ~~~~~~~~~i~~~~ 394 (395)
T PRK09288 381 EKAKEAASKVKVVG 394 (395)
T ss_pred HHHHHHHhheeecc
Confidence 99999999999987
No 26
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=363.91 Aligned_cols=383 Identities=15% Similarity=0.150 Sum_probs=285.8
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCCh---hhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~---~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
|||+|||++++..+..++++|+++|+++++++++.+.... ....++....+ .+.+.+.++++++++++|+
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~l~~~~~~~~~d~ 73 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVI-------INGDIDDLVEFLRKLGPEA 73 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhh-------cCCCHHHHHHHHHHcCCCE
Confidence 6899999999999999999999999999999877654321 22233322222 2367889999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCC---c
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF---P 223 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~---P 223 (537)
|+|+.+. .....+.+.+..|+++ |++++++..++||..||++|+++|||+|++ ..+.+.+++.++++++|| |
T Consensus 74 vi~~~e~--~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~--~~~~~~~e~~~~~~~~g~~~~P 148 (416)
T PRK07206 74 IIAGAES--GVELADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQ--INTADWEEAEAWLRENGLIDRP 148 (416)
T ss_pred EEECCCc--cHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccE--EecCCHHHHHHHHHhcCCCCCC
Confidence 9997643 2234445566777763 789999999999999999999999999998 678899999999999998 9
Q ss_pred EEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHH-hcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeec--cc
Q 009323 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SI 300 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~--~~ 300 (537)
+||||..|+||+||++|++.+|+.++++++...... ...+..+++||||+| .|++++++.. +|+++....... ..
T Consensus 149 ~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~~ 226 (416)
T PRK07206 149 VVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVNFVSL-DGNHLVTEIVRYHKTS 226 (416)
T ss_pred EEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEEEEEE-CCEEEEEEeEEeeecc
Confidence 999999999999999999999999999887642110 011368999999999 8999999874 556554322111 11
Q ss_pred ccccceeEEEcC-CCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEeCCCCEEEEEEecCCCCc--cccchhhcCCC
Q 009323 301 QRRNQKLLEEAP-SPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVE--HPVTEMISSVD 376 (537)
Q Consensus 301 ~~~~~~~~~~~p-~~~l~~~~~~~i~~~a~~i~~alg~~-G~~~vEf~~~~~g~~~~lEiNpR~~g~--~~~~~~~~Gid 376 (537)
............ .+ .+....+++.+++.++++++|+. |++|+||+++++| ++++|||||++|+ ..+++.++|+|
T Consensus 227 ~~~~~~~~~~~~~~p-~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEin~R~~G~~~~~~~~~~~G~d 304 (416)
T PRK07206 227 LNSGSTVYDYDEFLD-YSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEIGARLDGGLHPDVARLATGDS 304 (416)
T ss_pred cCCCCceecccccCC-ccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEECCccCCCCccchhhhhcCcC
Confidence 111111111111 12 35677889999999999999996 9999999999888 9999999999987 45788999999
Q ss_pred HHHHHHHHHcCCCCCCCC--CccccceeEEEEEEeeCCCCCCCCCCCCceeEEE----cCCCCeE-EEeeeccCCCccCC
Q 009323 377 LIEEQIHVAMGGKLRYKQ--EDIVLQGHSIECRINAEDPFKNFRPGPGRITAYL----PAGGPFV-RMDSHVYPDYVVPP 449 (537)
Q Consensus 377 l~~~~i~~a~G~~l~~~~--~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~----~~~~~~v-r~~~~~~~G~~v~~ 449 (537)
+++++++.++|.+..... ......+++....+. .|..|++..+. ....|++ .+..++..|+.|.+
T Consensus 305 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~ 376 (416)
T PRK07206 305 QLDATVESLADPDVFRETLREGYRLKAHVFNVFLI--------SPAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQ 376 (416)
T ss_pred HHHHHHHHHhCchhhccccCCCcChhhceEEEEEe--------cCCCceEeCCccHHHHHhCCchhheEEecCCCCCccC
Confidence 999999999998753221 111223343322232 24457777652 1223444 45678889999987
Q ss_pred CCC--cccEEEEEEcCCHHHHHHHHHHhh
Q 009323 450 SYD--SLLGKLIVWAPTREKAIERMKRAL 476 (537)
Q Consensus 450 ~~d--s~ig~vi~~g~~~~ea~~~~~~al 476 (537)
..| .++|++++.++|.+++.+..+++-
T Consensus 377 ~~d~~~~~g~v~~~~~~~~~~~~~~~~~~ 405 (416)
T PRK07206 377 TVDLFSQPGTVYLVHKDKEQLWQDYEKIR 405 (416)
T ss_pred ceecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 544 369999999999999887766554
No 27
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=6.1e-42 Score=397.56 Aligned_cols=411 Identities=23% Similarity=0.340 Sum_probs=315.4
Q ss_pred CcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
++||||+|+|++ +..++++++++|++|+++++++.....+..++|+.+.. ..+.+.+.+++
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~--------p~~~e~l~~ii 78 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIE--------PITPEFVEKII 78 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEEC--------CCCHHHHHHHH
Confidence 789999999986 35799999999999999987776655667789987754 24578999999
Q ss_pred HHcCCCEEEeCCCcccc-c--HHH--HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHH
Q 009323 140 ISRGCTMLHPGYGFLAE-N--AVF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (537)
Q Consensus 140 ~~~~~d~V~p~~g~~se-~--~~~--a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~ 214 (537)
+++++|+|+|+.|.... + ..+ ...++.+|++++||+++++..+.||..+|++|+++|+|+|++ ..+.+.+++.
T Consensus 79 ~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~~ 156 (1066)
T PRK05294 79 EKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRS--GIAHSMEEAL 156 (1066)
T ss_pred HHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCe--eeeCCHHHHH
Confidence 99999999998654211 1 111 235788999999999999999999999999999999999999 7889999999
Q ss_pred HHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEe
Q 009323 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (537)
Q Consensus 215 ~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~ 294 (537)
++++++|||+||||..|.||+|+.+|++.+|+.+++++....+ ...+++||+||+|.+|+++.++.|++|+++.+.
T Consensus 157 ~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~ 232 (1066)
T PRK05294 157 EVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVC 232 (1066)
T ss_pred HHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCCCCEEEEe
Confidence 9999999999999999999999999999999999988654322 236899999999988999999999999988775
Q ss_pred eeecc--cccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEe-CCCCEEEEEEecCCCCccccch
Q 009323 295 ERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 295 ~r~~~--~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~-G~~~vEf~~~-~~g~~~~lEiNpR~~g~~~~~~ 370 (537)
..+.. ...+.......+|+..+++...+++.+++.+++++||+. |++++||+++ .+|++||+|||||++++..+++
T Consensus 233 ~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~~s 312 (1066)
T PRK05294 233 SIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSALAS 312 (1066)
T ss_pred eeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCcceeeee
Confidence 43321 111222334567886689999999999999999999999 9999999999 5788999999999999988888
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCC
Q 009323 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPS 450 (537)
Q Consensus 371 ~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~ 450 (537)
.++|+|+.+..++.++|.++......+ .|. +. ..|.|.-..+.. .. |.+.++.+-....+..+.
T Consensus 313 ~~tG~pl~~~~~~~~lG~~l~~m~n~~--~g~---------~~-~~~~p~~~~v~~-k~---p~~~~~~y~k~~~~~g~~ 376 (1066)
T PRK05294 313 KATGYPIAKVAAKLAVGYTLDEIKNDI--TGK---------TP-ASFEPSLDYVVT-KI---PRFAFEKFPGADRRLGTQ 376 (1066)
T ss_pred HhhCCCHHHHHHHHHcCCChHHhcCcc--cCC---------Cc-ccccccCCeEEE-Ec---cCCccccccCCCCCccce
Confidence 899999999999999999874322111 121 11 124444333211 11 344433222222222222
Q ss_pred CCcccEEEEEEcCCHHHHHHHHHHhhhcceEeeec------cCHHHHHHhcCCc----------cccCC----------c
Q 009323 451 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP------TTIEYHKLILDVE----------DFKNG----------K 504 (537)
Q Consensus 451 ~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~------tn~~~~~~~~~~~----------~f~~~----------~ 504 (537)
..+ +|||++.|+|.++|++++.+.++. ...|.. .+.+-+...|.|| +|+.| +
T Consensus 377 mrk-~G~v~~~g~~~e~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~ 454 (1066)
T PRK05294 377 MKS-VGEVMAIGRTFEESLQKALRSLEI-GVTGLDEDLFEEESLEELREELKEPTPERLFYIAEAFRRGASVEEIHELTK 454 (1066)
T ss_pred ecc-cceEEEEcCCHHHHHHHHHHhcCC-CCCCCCccccccCCHHHHHhhcCCCCCchHHHHHHHHHcCCCHHHHHHHHC
Confidence 233 899999999999999999999954 334432 2235555566665 55666 6
Q ss_pred ccccccccc
Q 009323 505 VDTAFIPKH 513 (537)
Q Consensus 505 ~~t~~~~~~ 513 (537)
+|.+||.+.
T Consensus 455 i~~~~~~~~ 463 (1066)
T PRK05294 455 IDPWFLEQI 463 (1066)
T ss_pred CCHHHHHHH
Confidence 778888754
No 28
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=5.7e-43 Score=332.99 Aligned_cols=208 Identities=48% Similarity=0.828 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCC
Q 009323 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN 263 (537)
Q Consensus 184 dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~ 263 (537)
||..++++++++|+|++|++...+.+.+++.++++++|||++|||+.|+||+|++++++.+||.++++.+.+++..+|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999995444599999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEE
Q 009323 264 DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTV 343 (537)
Q Consensus 264 ~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~v 343 (537)
.++++|+||.+++|++|++++|++|+++++++++|+.++++++.++++|++.++++.+++|.+.+.++++++||.|++|+
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC-CCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCCCC
Q 009323 344 EFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (537)
Q Consensus 344 Ef~~~~-~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~l~ 391 (537)
||++++ ++++||||||||++.+|+++++++|+||+++++++++|.+|+
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 999995 889999999999999999999999999999999999999875
No 29
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.1e-41 Score=391.82 Aligned_cols=413 Identities=22% Similarity=0.314 Sum_probs=314.8
Q ss_pred CCcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009323 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~ 138 (537)
.+|||||+|+|.+ +..++++++++|++|+++++++........++|..+. . ..+.+.+.++
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~-e-------p~~~e~l~~i 77 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYF-E-------PLTVEFVKRI 77 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEE-C-------CCCHHHHHHH
Confidence 3789999999986 5689999999999999998776554455567887664 2 3467899999
Q ss_pred HHHcCCCEEEeCCCcccc-cH--HH--HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHH
Q 009323 139 AISRGCTMLHPGYGFLAE-NA--VF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (537)
Q Consensus 139 a~~~~~d~V~p~~g~~se-~~--~~--a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~ 213 (537)
++++++|+|+|..|.... +. .+ ...+++.|++++|++++++..+.||..+|++|+++|+|+|++ ..+.+.+++
T Consensus 78 i~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~--~~v~s~ee~ 155 (1068)
T PRK12815 78 IAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPES--EIVTSVEEA 155 (1068)
T ss_pred HHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCc--eeeCCHHHH
Confidence 999999999997653211 11 11 125788899999999999999999999999999999999999 788999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEE
Q 009323 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~ 293 (537)
.++++++|||+||||..|.||+|+.++++.+||.++++.+...+ ...+++||+||+|++|++++++.|.+|+++.+
T Consensus 156 ~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~ 231 (1068)
T PRK12815 156 LAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNGNCITV 231 (1068)
T ss_pred HHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999998765432 13589999999998899999999988888876
Q ss_pred eeeecc--cccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC-CCEEEEEEecCCCCccccch
Q 009323 294 GERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 294 ~~r~~~--~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~-g~~~~lEiNpR~~g~~~~~~ 370 (537)
...+.. ...........+|+..++++..+++.+++.+++++||+.|.+++||+++++ |++|++|||||++++..++.
T Consensus 232 ~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~ 311 (1068)
T PRK12815 232 CNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRSSALAS 311 (1068)
T ss_pred EeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccchhhhh
Confidence 543211 111112234457876689999999999999999999999999999999954 78999999999999999999
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCC
Q 009323 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPS 450 (537)
Q Consensus 371 ~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~ 450 (537)
.++|+++.+..+++++|.+++....++ .|.. + ..|.|.-..+. +.. |.|.++.+-....+....
T Consensus 312 ~atG~pl~~~~~~~alG~~l~ei~~~i--~g~~---------~-a~~ep~~d~~~-~k~---p~~~f~~y~~~~~~~g~k 375 (1068)
T PRK12815 312 KATGYPIAKIAAKLAVGYTLNELKNPV--TGLT---------Y-ASFEPALDYVV-VKF---PRWPFDKFGYADRTLGTQ 375 (1068)
T ss_pred HhhCCcHHHHHHHHHcCCChHHhcCCc--cCCc---------c-cccCCccceEE-EEe---ccCccccccCccccccce
Confidence 999999999999999999875332212 2211 0 13445544321 122 445543332222232222
Q ss_pred CCcccEEEEEEcCCHHHHHHHHHHhhhcceEeeec-------cCHHHHHHhcCCc----------cccCC----------
Q 009323 451 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP-------TTIEYHKLILDVE----------DFKNG---------- 503 (537)
Q Consensus 451 ~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~-------tn~~~~~~~~~~~----------~f~~~---------- 503 (537)
..| .|+|++.|+|.++|++|+.++++. ...|.. .+-+-+...|.|| +|+.|
T Consensus 376 mks-~G~v~~ig~~~eea~~ka~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t 453 (1068)
T PRK12815 376 MKA-TGEVMAIGRNFESAFQKALRSLEI-KRNGLSLPIELSGKSDEELLQDLRHPDDRRLFALLEALRRGITYEEIHELT 453 (1068)
T ss_pred ecc-cceEEEecCCHHHHHHHHHHhhcC-CCCCCCCccccccCCHHHHHHHhccCCCChHHHHHHHHHcCCCHHHHHHHH
Confidence 222 499999999999999999999964 333332 1234455556665 56666
Q ss_pred cccccccccch
Q 009323 504 KVDTAFIPKHE 514 (537)
Q Consensus 504 ~~~t~~~~~~~ 514 (537)
++|-+||.+..
T Consensus 454 ~i~~~~~~~~~ 464 (1068)
T PRK12815 454 KIDPFFLQKFE 464 (1068)
T ss_pred CCCHHHHHHHH
Confidence 77888887643
No 30
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=5.3e-41 Score=347.54 Aligned_cols=351 Identities=20% Similarity=0.308 Sum_probs=277.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g 152 (537)
+|+|+|+|..+..++++|+++|++|++++ .+++++...++|+.+.. +|.|.+.+.++++. +|.|.+.++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d--~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e 69 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLD--PDANSPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFE 69 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEC--CCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcC
Confidence 48999999999999999999999999994 45567778999998853 48899999999975 688864332
Q ss_pred cccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCC
Q 009323 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (537)
Q Consensus 153 ~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~ 232 (537)
.. .......+++.|+++ +|+++++..++||..+|++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|+
T Consensus 70 ~i--~~~~l~~l~~~g~~~-~p~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~~g 144 (352)
T TIGR01161 70 HV--DVEALEKLEARGVKL-FPSPDALAIIQDRLTQKQFLQKLGLPVPPF--LVIKDEEELDAALQELGFPVVLKARTGG 144 (352)
T ss_pred cC--CHHHHHHHHhCCCeE-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCc--cEeCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 21 234557778888774 599999999999999999999999999998 6789999999999999999999999986
Q ss_pred -CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEEc
Q 009323 233 -GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311 (537)
Q Consensus 233 -gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~~ 311 (537)
||+|++++++.+|+.++++.+ .+..+++||||++.+|+++.++.+.+|++..+...+ ...+.........
T Consensus 145 ~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~~~~-~~~~~g~~~~~~~ 215 (352)
T TIGR01161 145 YDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAFYPVVE-NIHQDGILRYVVA 215 (352)
T ss_pred CCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEECCcc-cEEeCCEEEEEEC
Confidence 899999999999999888764 235899999999669999999988788877654322 2222333334456
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCCCC
Q 009323 312 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (537)
Q Consensus 312 p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~l~ 391 (537)
|+. ++++..+++.+++.+++++|||.|++++||+++++|++||+|||||++++..++...++++.++.+++.++|.+++
T Consensus 216 p~~-~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l~ 294 (352)
T TIGR01161 216 PAA-VPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPLG 294 (352)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCCC
Confidence 774 8888999999999999999999999999999998889999999999999877788899999999999999999885
Q ss_pred CCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCC
Q 009323 392 YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPT 464 (537)
Q Consensus 392 ~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~ 464 (537)
.. .....++++.+...+ .. ..++... + ...|++.+ ++|......+ ++.+|||.+.|.|
T Consensus 295 ~~----~~~~~~~m~n~~~~~-~~---~~~~~~~-~--~~~~~~~~--~~y~k~~~~~--~rk~Ghi~~~~~~ 352 (352)
T TIGR01161 295 ST----ELLLPSVMVNLLGTE-DD---VIPLWEE-I--LALPGAKL--HWYGKAEVRP--GRKVGHVNLVGSD 352 (352)
T ss_pred Cc----cccCCEEEEEEecCc-cc---hHHHHHH-H--HhCCCCEE--EECCCCCCCC--CCcceEEEeecCC
Confidence 43 234557888887653 00 0011111 1 11255554 4454323333 5679999999875
No 31
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.8e-40 Score=379.35 Aligned_cols=380 Identities=16% Similarity=0.199 Sum_probs=298.7
Q ss_pred CcEEEEEcCcH--HHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc-CCCEE
Q 009323 71 QEKILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~--~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~-~~d~V 147 (537)
-|+|++++.+. ++..++++++++||+++++.+++.........+++.+.. ++.|.+.+++.+.+. .+++|
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~-------d~~d~~~l~~~~~~~~~i~~V 74 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISA-------DTSDPDRIHRFVSSLDGVAGI 74 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEc-------CCCCHHHHHHHHHhcCCCCEE
Confidence 46889998654 567899999999999999976554333223346666654 378899999999886 68999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEE
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvK 227 (537)
+++.+. .....+++++.+|++ |++++++..++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+|||
T Consensus 75 ~~~se~--~v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~--~~v~~~~e~~~~~~~~~~PvVVK 148 (887)
T PRK02186 75 MSSSEY--FIEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRT--HALALRAVALDALDGLTYPVVVK 148 (887)
T ss_pred EeCchh--hHHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHhCCCCEEEE
Confidence 987543 234566788888886 789999999999999999999999999998 67889999999999999999999
Q ss_pred ecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEE--eeeecccccccc
Q 009323 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF--GERDCSIQRRNQ 305 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~--~~r~~~~~~~~~ 305 (537)
|..|+||+||++|++.+|+.++++.+... +...+++||||+| .||+++++.+.. .+..+ ..+.........
T Consensus 149 P~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g-~~~i~~i~~k~~~~~~~~v 221 (887)
T PRK02186 149 PRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVAR-GHQVLGITRKHLGPPPHFV 221 (887)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECC-cEEEEEEEeeecCCCCCeE
Confidence 99999999999999999999999877542 2578999999999 899999998743 33333 222211111122
Q ss_pred eeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEeCCCCEEEEEEecCCCCcc--ccchhhcCCCHHHHHH
Q 009323 306 KLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVEH--PVTEMISSVDLIEEQI 382 (537)
Q Consensus 306 ~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~-G~~~vEf~~~~~g~~~~lEiNpR~~g~~--~~~~~~~Gidl~~~~i 382 (537)
......|++ +++...+++.+++.++++++|+. |++|+||+++++| +||+|||||++|+. .+++.++|+|++++++
T Consensus 222 e~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 222 EIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred EeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 233346776 88899999999999999999997 9999999999776 99999999999884 5788899999999999
Q ss_pred HHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEc-----CCCCeEEEeeeccCCCccCCC--CCccc
Q 009323 383 HVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLP-----AGGPFVRMDSHVYPDYVVPPS--YDSLL 455 (537)
Q Consensus 383 ~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~-----~~~~~vr~~~~~~~G~~v~~~--~ds~i 455 (537)
+.++|.++.... ...+++....+. .+..|++..+.. +..+.+.+...+.+|+.|.+. +.+++
T Consensus 300 ~~~lG~~~~~~~---~~~~~~ai~~~~--------~~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ 368 (887)
T PRK02186 300 DLHLGVAAFADP---TAKRYGAIRFVL--------PARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRI 368 (887)
T ss_pred HHhCCCCCCCCC---CCCCeEEEEEEe--------cCCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCcc
Confidence 999999875432 223443322222 234688877622 234556667778899999764 33579
Q ss_pred EEEEEEcCCHHHHHHHHHHhhhcceEee
Q 009323 456 GKLIVWAPTREKAIERMKRALNDTIITG 483 (537)
Q Consensus 456 g~vi~~g~~~~ea~~~~~~al~~~~i~g 483 (537)
|+|+++|+|.+++.++++++.+.++|+-
T Consensus 369 g~vi~~g~~~~e~~~~~~~~~~~l~~~~ 396 (887)
T PRK02186 369 AAVVCAGDHRDSVAAAAERAVAGLSIDI 396 (887)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhcCEEEE
Confidence 9999999999999999999999998854
No 32
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.2e-38 Score=335.43 Aligned_cols=390 Identities=16% Similarity=0.168 Sum_probs=278.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.+||||+|+|.....+++++++.++.+.++....+......... ..+.+ ++.|.+.|+++|++.++|+|+++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~-~~~~~-------~~~d~~~l~~~a~~~~iD~Vv~g 75 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELL-PADSF-------SILDKSSVQSFLKSNPFDLIVVG 75 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccc-cccCc-------CcCCHHHHHHHHHHcCCCEEEEC
Confidence 46999999999999999999999966555543443321111000 00112 47899999999999999999987
Q ss_pred CCccccc---HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEE
Q 009323 151 YGFLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 151 ~g~~se~---~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvK 227 (537)
. |+ ..+++.++++|++++||+..++++++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+|||
T Consensus 76 ~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~--~~~~~~~ea~~~~~~~~~PvVVK 149 (426)
T PRK13789 76 P----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASY--KTFTEYSSSLSYLESEMLPIVIK 149 (426)
T ss_pred C----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCe--EeeCCHHHHHHHHHhcCCCEEEE
Confidence 6 44 346678889999999999999999999999999999999999998 77899999999999999999999
Q ss_pred ecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEeccCCCcEEEEEEEEeCCCcEEEEee-eecc-cc--
Q 009323 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDCS-IQ-- 301 (537)
Q Consensus 228 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~-r~~~-~~-- 301 (537)
|..+++|+||+++++.+|+.++++.+.... .|+ +..++|||||+| +|+++.++.|+. .++.+.. ++.. ..
T Consensus 150 p~~~~~gkGV~vv~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~lp~~~d~k~~~d~ 225 (426)
T PRK13789 150 ADGLAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLPAAQDHKRAFDG 225 (426)
T ss_pred eCCCCCCCcEEEECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEccceEecccccCC
Confidence 999999999999999999999999886432 233 348999999999 899999998754 4443422 1110 10
Q ss_pred ---cccceeEEEcCCCCCCHHHHHHHHH-HHHHHH---HHcC--CcceeEEEEEEeCCCCEEEEEEecCCCCc-cccchh
Q 009323 302 ---RRNQKLLEEAPSPALTPELRKAMGD-AAVAAA---ASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEM 371 (537)
Q Consensus 302 ---~~~~~~~~~~p~~~l~~~~~~~i~~-~a~~i~---~alg--~~G~~~vEf~~~~~g~~~~lEiNpR~~g~-~~~~~~ 371 (537)
.+......++|++.++++..+++.+ ++.+++ ++.| |.|++++||+++++|++||+|+|+|++.. ....-.
T Consensus 226 d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~ 305 (426)
T PRK13789 226 DQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLA 305 (426)
T ss_pred CCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhc
Confidence 1112345678888788888888764 444555 4446 77999999999988889999999999542 222222
Q ss_pred hcCCCHHHHHHHHHcCCCCCCCCCcccc-ceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEe-eecc-CCCccC
Q 009323 372 ISSVDLIEEQIHVAMGGKLRYKQEDIVL-QGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMD-SHVY-PDYVVP 448 (537)
Q Consensus 372 ~~Gidl~~~~i~~a~G~~l~~~~~~~~~-~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~-~~~~-~G~~v~ 448 (537)
....||++.+++++.|...... +.. .+.++.+.+.+... . ..+..|....+.....+++.+. .... .+.++.
T Consensus 306 ~l~~dl~~~~~~~~~g~l~~~~---~~~~~~~s~~vv~a~~gy-p-~~~~~g~~i~~~~~~~~~~~if~a~~~~~~~~~~ 380 (426)
T PRK13789 306 MLDGDLLELLYAASTGKIKVVN---LKLKQGAAAVVVLAAQGY-P-DSYEKNIPLNLPETSGQNVVLFHAGTKKKDGKVF 380 (426)
T ss_pred cCCCCHHHHHHHHHcCCCCCCC---ceecCCceEEEEECcCCc-C-CCcCCCCEEeccCcCCCCcEEEEeeeeeeCCEEE
Confidence 3457999999999999643221 122 34444444433211 1 1122344222321111343332 1111 122222
Q ss_pred CCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 449 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 449 ~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
. ...++..|++.|.|.++|.++++++++.+.+.|.
T Consensus 381 t-~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~ 415 (426)
T PRK13789 381 S-SGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKT 415 (426)
T ss_pred e-CCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 2 2445778889999999999999999999999984
No 33
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.2e-38 Score=337.55 Aligned_cols=387 Identities=20% Similarity=0.215 Sum_probs=271.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc-CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~-G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+||||+|.|.....+++++++. |+.++.+. ..+ ......++.+.+ ++.|.+.+++++++.++|+|+++
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~-~~n---~g~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~ 69 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVA-PGN---AGTALLAENVVI-------DVTDIEALVAFAKEEGIDLTVVG 69 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEe-CCC---HHHHhhccccCC-------CCCCHHHHHHHHHHhCCCEEEEC
Confidence 4899999999989999999996 55566552 211 122222222322 46899999999999999999987
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~ 230 (537)
.+... ...+++.++++|++++||+++++.+++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+||||..
T Consensus 70 ~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~P~VvKP~~ 146 (420)
T PRK00885 70 PEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAY--ETFTDAEEALAYLDEKGAPIVVKADG 146 (420)
T ss_pred CchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 54211 1355677888999999999999999999999999999999999998 67899999999999999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeee-cc-c-----c
Q 009323 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-CS-I-----Q 301 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~-~~-~-----~ 301 (537)
++||+||++|++.+|+.++++.+.+.. .++ ...+++||||+| +|+++.++.|+. .+..+.... .. . .
T Consensus 147 ~~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 222 (420)
T PRK00885 147 LAAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPLPTAQDHKRAGDGDTG 222 (420)
T ss_pred CCCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEeceeeEeeeecccCCCC
Confidence 999999999999999999999876432 122 358999999999 999999998754 555443321 10 0 0
Q ss_pred cccceeEEEcCCCCCCHHHHHHHHH-HHHHHHH---HcC--CcceeEEEEEEeCCCCEEEEEEecCCCCc-cccchhhcC
Q 009323 302 RRNQKLLEEAPSPALTPELRKAMGD-AAVAAAA---SIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISS 374 (537)
Q Consensus 302 ~~~~~~~~~~p~~~l~~~~~~~i~~-~a~~i~~---alg--~~G~~~vEf~~~~~g~~~~lEiNpR~~g~-~~~~~~~~G 374 (537)
.........+|++.++++..+++.+ ++.++++ ++| |.|++|+||+++++| +|++|+|||+++. +......++
T Consensus 223 ~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~~ 301 (420)
T PRK00885 223 PNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRLK 301 (420)
T ss_pred CCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhcc
Confidence 1112233457776678777766654 5555444 545 569999999999888 9999999999765 334444567
Q ss_pred CCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCce-eEEEcCCCCeEEE-eeecc-CCCccCCCC
Q 009323 375 VDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRI-TAYLPAGGPFVRM-DSHVY-PDYVVPPSY 451 (537)
Q Consensus 375 idl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i-~~~~~~~~~~vr~-~~~~~-~G~~v~~~~ 451 (537)
.|+++.+++++.|...+.... ..++.++.+.+.+... -..+..|.. ..+... .++.+ ...+. .+..+.. .
T Consensus 302 ~d~~~~~~~~~~g~~~~~~~~--~~~~~a~~~~~~~~gy--~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~-~ 374 (420)
T PRK00885 302 SDLVELLLAAADGKLDEVELE--WDDRAAVGVVLAAKGY--PGDYRKGDVITGLEAA--DADKVFHAGTKLEDGKLVT-N 374 (420)
T ss_pred CCHHHHHHHHHcCCCCCCCce--ECCCcEEEEEEeCCCC--CCCCCCCCEeeccccc--CCCEEEECceeccCCeEEE-e
Confidence 799999999999976533211 1133444333322111 112222322 111110 11111 01111 1111111 1
Q ss_pred CcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 452 DSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 452 ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
..++++|+++|+|++||.++++++++.+++.|.
T Consensus 375 g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~ 407 (420)
T PRK00885 375 GGRVLCVTALGDTLEEAQKRAYAALDKIDFDGG 407 (420)
T ss_pred CCEEEEEEEecCCHHHHHHHHHHHHhccCCCCC
Confidence 346999999999999999999999999999884
No 34
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=2.3e-38 Score=336.02 Aligned_cols=389 Identities=19% Similarity=0.222 Sum_probs=273.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
+||||+|.|..+..++++++++|+.+.++....++ ......+++.+.+ ++.|.+.++++++++++|+|+|+.
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNA-GTARLAKNKNVAI-------SITDIEALVEFAKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccEEEEECCCH-HHhhhcccccccC-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence 48999999999999999999999766555433322 2111112223322 478999999999999999999876
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCc-EEEEecC
Q 009323 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATA 230 (537)
Q Consensus 152 g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~P-vvvKp~~ 230 (537)
+.. -...+++.++.+|++++||++++++.++||..+|++|+++|||+|++ ..+.+.+++.+++++++|| +|+||..
T Consensus 73 e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~~~~~~~~~~~~~~~g~P~~VvKp~~ 149 (423)
T TIGR00877 73 EAP-LVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEY--EVFTDPEEALSYIQEKGAPAIVVKADG 149 (423)
T ss_pred chH-HHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCe--EEECCHHHHHHHHHhcCCCeEEEEECC
Confidence 421 01356788899999999999999999999999999999999999998 7889999999999999999 9999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecc--c-----c
Q 009323 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--I-----Q 301 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~--~-----~ 301 (537)
|+||+|++++++.+|+.++++++.... ++ +..+++|+||+| .|+++.++.|+. .+..+...+.. . .
T Consensus 150 ~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~~~ 224 (423)
T TIGR00877 150 LAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPMPPAQDHKRALEGDKG 224 (423)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECccC-ceEEEEEEEcCC-eEEeceeeeeeeecccCCCC
Confidence 999999999999999999998876543 22 358999999999 899999998854 45444332110 0 0
Q ss_pred cccceeEEEcCCCCCCHHHHHH----HHHHHHHHHHHcC--CcceeEEEEEEeCCCCEEEEEEecCCCCc-cccchhhcC
Q 009323 302 RRNQKLLEEAPSPALTPELRKA----MGDAAVAAAASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISS 374 (537)
Q Consensus 302 ~~~~~~~~~~p~~~l~~~~~~~----i~~~a~~i~~alg--~~G~~~vEf~~~~~g~~~~lEiNpR~~g~-~~~~~~~~G 374 (537)
.........+|++.+++...++ +.+.+.+.+.++| +.|++|+||+++++| +||+|||||+++. +......++
T Consensus 225 ~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~~ 303 (423)
T TIGR00877 225 PNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLK 303 (423)
T ss_pred CCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC-cEEEEEEccCCCccceeEecccC
Confidence 0011223356765577665544 3333444555555 679999999999888 9999999999775 322333467
Q ss_pred CCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEc---CCCCeEEEeeeccCCCccCC--
Q 009323 375 VDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLP---AGGPFVRMDSHVYPDYVVPP-- 449 (537)
Q Consensus 375 idl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~---~~~~~vr~~~~~~~G~~v~~-- 449 (537)
+|+++.+++++.|...++... ..++.++.+.+.+. .|....+....+.. ...+++.+. ....+.....
T Consensus 304 ~dl~~~~~~~~~g~l~~~~~~--~~~~~a~~~~~~~~----~yp~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~ 376 (423)
T TIGR00877 304 SDLLEVCLAAVEGKLDEVELR--FDNRAAVTVVLASE----GYPGDYRKGDPITGEPLIEAEGVKVF-HAGTKQDNGKLV 376 (423)
T ss_pred CCHHHHHHHHHcCCCCCCCce--ECCCceEEEEEecC----CcCCCCCCCCEeeCCcccccCCCEEE-ECceeccCCEEE
Confidence 999999999999963222111 12334443344322 12112333333321 111333321 1111111111
Q ss_pred CCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 450 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 450 ~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
....++|+|++.|+|.++|.++++++++.++++|.
T Consensus 377 ~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~ 411 (423)
T TIGR00877 377 TSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGM 411 (423)
T ss_pred EcCCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 12356999999999999999999999999999884
No 35
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1e-38 Score=336.86 Aligned_cols=389 Identities=15% Similarity=0.110 Sum_probs=275.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|.|.....+++++++.|++++++..+ .+.....++++++.+ +..|.+.++++|+++++|+|++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~--~Npg~~~~a~~~~~~-------~~~d~e~l~~~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGH--ENPSIKKLSKKYLFY-------DEKDYDLIEDFALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CChhhhhcccceeec-------CCCCHHHHHHHHHHhCCCEEEE
Confidence 5789999999999999999999999888877432 222224456655444 3678999999999999999999
Q ss_pred CCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEe
Q 009323 150 GYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 150 ~~g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp 228 (537)
+.+. +. ...+..+++.|++++||+.+++++++||..+|++|+++|||+|+.+ ..+.+.+++..++.+++||+||||
T Consensus 72 ~~d~--~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~~~~~~e~~~~~~~~~~PvVVKP 148 (435)
T PRK06395 72 GPDP--VLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NACFSEKDAARDYITSMKDVAVKP 148 (435)
T ss_pred CCCh--HHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ceeCChHHHHHHHHhhCCCEEEEe
Confidence 8653 22 2445667788999999999999999999999999999999998654 355667888887888899999999
Q ss_pred cCCCCCccEEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeee-ec--c----c
Q 009323 229 TAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DC--S----I 300 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r-~~--~----~ 300 (537)
.+++||+||++|++. +++.++++.+.... + .+..++|||||.| .|++++++.|+. .+..++.. +. . .
T Consensus 149 ~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~G-~E~Svd~~~dg~-~~~~l~~~~d~~r~~~~d~ 223 (435)
T PRK06395 149 IGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMPIVQDYKRAYEGDH 223 (435)
T ss_pred CCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecCC-ceEEEEEEEcCC-eEEEecccceeeecccCCC
Confidence 999999999999643 33444444443321 1 1367999999999 899999999865 45444322 11 0 0
Q ss_pred ccccceeEEEc----CCCCCCHHHHHHHHHHHHHHHHHcC-----CcceeEEEEEEeCCCCEEEEEEecCCCCc-cccch
Q 009323 301 QRRNQKLLEEA----PSPALTPELRKAMGDAAVAAAASIG-----YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTE 370 (537)
Q Consensus 301 ~~~~~~~~~~~----p~~~l~~~~~~~i~~~a~~i~~alg-----~~G~~~vEf~~~~~g~~~~lEiNpR~~g~-~~~~~ 370 (537)
..+......++ |.+.++++..+++.+++.+++++|+ |+|+.++||+++++| +|+||+|+|++.. ...+.
T Consensus 224 gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il 302 (435)
T PRK06395 224 GPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVL 302 (435)
T ss_pred CCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhh
Confidence 11111223333 4455899999999999999999999 668888999999888 9999999999754 33333
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEE-eeecc-CCCccC
Q 009323 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRM-DSHVY-PDYVVP 448 (537)
Q Consensus 371 ~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~-~~~~~-~G~~v~ 448 (537)
.....|+++.++.++.| ++.. ..... +..++.+.+.++.+- ..|..|.|........+++.+ ...+. ....+.
T Consensus 303 ~~l~~d~~~~~~~~~~g-~l~~-~~~~~-~~~~~~~~l~~~gYp--~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (435)
T PRK06395 303 YLLKSDFVETLHQIYSG-NLNG-SIKFE-RKATVLKYIVPPGYG--ENPSPGRIKIDKTIFDSNSDVYYASVSGTLNDVK 377 (435)
T ss_pred hhcccCHHHHHHHHhcC-CCCC-Cceec-CCCEEEEEEecCCCC--CCCCCCceeccccccCCCCEEEEeeccccCCCeE
Confidence 44689999999999999 4432 11111 223444444444322 234456554221111133332 11111 001121
Q ss_pred CCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEee
Q 009323 449 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG 483 (537)
Q Consensus 449 ~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g 483 (537)
. ...++++|++.|+|.++|.++++++++.+. .|
T Consensus 378 s-~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~ 410 (435)
T PRK06395 378 T-SGSRSLAIIAKGDSIPEASEKVDSDLNAVH-GS 410 (435)
T ss_pred E-CCCcEEEEEEEcCCHHHHHHHHHHHHhccC-CC
Confidence 1 244799999999999999999999999998 55
No 36
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=8.7e-39 Score=319.86 Aligned_cols=375 Identities=22% Similarity=0.317 Sum_probs=308.3
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
++|..++ ....+..+++++|+.|+.|+++.+++.+......+||..++. ....+.+..++++.++|+|+|.
T Consensus 6 i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~e--------P~~~E~v~~Ii~~E~~Dailp~ 77 (400)
T COG0458 6 IVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIE--------PITKEPVEKIIEKERPDAILPT 77 (400)
T ss_pred eeeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeee--------cCcHHHHHHHHHhcCcceeecc
Confidence 3455555 455688899999999999999998888888888999999975 4678899999999999999999
Q ss_pred CCcccc-cH--HH--HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEE
Q 009323 151 YGFLAE-NA--VF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225 (537)
Q Consensus 151 ~g~~se-~~--~~--a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~Pvv 225 (537)
.|-... +. .+ ...+++.|++++|.++++++.+.||..++++|++.|+|+| . ....+.+++.++.+.+|||||
T Consensus 78 ~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~--~~~~~~~e~~~~~~~ig~PvI 154 (400)
T COG0458 78 LGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-S--RIAHSVEEADEIADEIGYPVI 154 (400)
T ss_pred cCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-c--cccccHHHHhhhHhhcCCCEE
Confidence 764222 21 11 1235667999999999999999999999999999999999 4 578899999999999999999
Q ss_pred EEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeec--ccccc
Q 009323 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SIQRR 303 (537)
Q Consensus 226 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~--~~~~~ 303 (537)
|||..+.||.|..+++|.+||.+..+.....+ +..++++||+|.|++|+++.++.|.+++++.....+. ....+
T Consensus 155 VrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvh 230 (400)
T COG0458 155 VKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVH 230 (400)
T ss_pred EecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcccccccc
Confidence 99999999999999999999999988765543 3469999999999999999999999989887755432 23444
Q ss_pred cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC-CCEEEEEEecCCCCccccchhhcCCCHHHHHH
Q 009323 304 NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPVTEMISSVDLIEEQI 382 (537)
Q Consensus 304 ~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~-g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i 382 (537)
....+..+|+..+++...+.+...+.++++.+|..|.++++|.++++ |++||+|||||++++..+.++++|+.+.....
T Consensus 231 tgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaa 310 (400)
T COG0458 231 TGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAA 310 (400)
T ss_pred ccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHH
Confidence 55677789999999999999999999999999999999999999954 69999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEc
Q 009323 383 HVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWA 462 (537)
Q Consensus 383 ~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g 462 (537)
.++.|..++....++...+++ .|.|+.+.+..-.+ -+.++......+++.+.+.+ .|.|++.|
T Consensus 311 kla~g~~l~Ei~n~it~~t~a------------~fePsldyvv~k~p----r~~f~kf~~~~~~l~~~mks-~gevm~ig 373 (400)
T COG0458 311 KLAVGYTLDEIRNDITGRTPA------------SFEPSLDYVVTKIP----RFDFEKFPGADRRLGTQMKS-VGEVMAIG 373 (400)
T ss_pred HhhcccCchhhcCcccccccc------------ccCCccceeeeecC----CCCcccccccccceeeeeec-cceEEEec
Confidence 999999886554444433332 57888665443211 12233333345566667777 89999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 009323 463 PTREKAIERMKRALND 478 (537)
Q Consensus 463 ~~~~ea~~~~~~al~~ 478 (537)
++++||++|+.+.|+.
T Consensus 374 r~f~eal~ka~~~l~~ 389 (400)
T COG0458 374 RTFEEALQKALRSLEI 389 (400)
T ss_pred chHHHHHHHHHHhhcc
Confidence 9999999999998864
No 37
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=304.05 Aligned_cols=380 Identities=18% Similarity=0.231 Sum_probs=299.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
+|||++|+|+.+..++.+|+++|.+|++| |...+++..+.|+..+.++ .+|.++|....++.++|.|+|-.
T Consensus 13 ~kvmLLGSGELGKEvaIe~QRLG~eViAV--DrY~~APAmqVAhrs~Vi~-------MlD~~al~avv~rekPd~IVpEi 83 (394)
T COG0027 13 TKVMLLGSGELGKEVAIEAQRLGVEVIAV--DRYANAPAMQVAHRSYVID-------MLDGDALRAVVEREKPDYIVPEI 83 (394)
T ss_pred eEEEEecCCccchHHHHHHHhcCCEEEEe--cCcCCChhhhhhhheeeee-------ccCHHHHHHHHHhhCCCeeeehh
Confidence 68999999999999999999999999999 5556677788999888874 89999999999999999999865
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHH-HHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecC
Q 009323 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 152 g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l-~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~ 230 (537)
+.. +.+....+|+.|+.++ |+..+.+++.|+...|+++ +++|+|+.+| ..+.+.+++.++++++||||++||..
T Consensus 84 EAI--~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y--~fa~s~~e~~~a~~~iGfPcvvKPvM 158 (394)
T COG0027 84 EAI--ATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKY--RFADSLEELRAAVEKIGFPCVVKPVM 158 (394)
T ss_pred hhh--hHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccc--cccccHHHHHHHHHHcCCCeeccccc
Confidence 321 2345567889999987 9999999999999999998 5699999999 78999999999999999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEE
Q 009323 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~ 310 (537)
+++|+|..++++++|+.++|+.+.+.++. +++.+++|+||+-..|+++..+..-+|.-. +..-.-..|.+..+.-.+
T Consensus 159 SSSGkGqsvv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~-Fc~PIGHrq~dgdY~ESW 235 (394)
T COG0027 159 SSSGKGQSVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFDFEITLLTVRAVDGTGS-FCAPIGHRQEDGDYRESW 235 (394)
T ss_pred ccCCCCceeecCHHHHHHHHHHHHhcCCC--CCCcEEEEEEecceEEEEEEEEEEecCCCC-cCCCcccccCCCChhccc
Confidence 99999999999999999999998865432 357999999999877777777764343322 111111123444445556
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCCC
Q 009323 311 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390 (537)
Q Consensus 311 ~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~l 390 (537)
.|.. +++...++...+|.++.++||-.|++.||+++..|. +||-|+.||++.+..+|-...+++-+++++|..+|.|+
T Consensus 236 QP~~-mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDe-V~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi 313 (394)
T COG0027 236 QPQE-MSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDE-VIFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPI 313 (394)
T ss_pred Cccc-cCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCE-EEEeecCCCCCCCceEEEEeccchHHHHHHHHHhCCCc
Confidence 6776 999999999999999999999999999999999876 99999999999988888777899999999999999998
Q ss_pred CCCCCccccceeEEEEEEeeCCCCCCCCCCCCcee-EEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 391 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRIT-AYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 391 ~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~-~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
+. +++-+.+....|+++.- ...|....+. .+.. |++.+...-++- + +-..++|-.+++++|.++|+
T Consensus 314 ~~----i~~~~P~AS~vI~~~~~--~~~~~f~~l~~AL~~---p~t~vRlFGKP~--~--~~~RRmGVALA~a~~Ve~Ar 380 (394)
T COG0027 314 PE----IRQISPAASAVILAQET--SQAPTFDGLAEALGV---PDTQVRLFGKPE--A--DGGRRLGVALATAESVEEAR 380 (394)
T ss_pred cc----eeeecccccceeecccc--ccCCchhhHHHHhcC---CCceEEEecCCc--c--cCCceeeEEEecCccHHHHH
Confidence 52 23344444455554322 1223222222 2222 233222222221 1 11357999999999999999
Q ss_pred HHHHHhhhcceEee
Q 009323 470 ERMKRALNDTIITG 483 (537)
Q Consensus 470 ~~~~~al~~~~i~g 483 (537)
++++++.+.+.|.+
T Consensus 381 e~A~~aa~~i~v~~ 394 (394)
T COG0027 381 ERARKAASAIEVKG 394 (394)
T ss_pred HHHHHHHhheecCC
Confidence 99999999988753
No 38
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.3e-38 Score=310.49 Aligned_cols=367 Identities=20% Similarity=0.302 Sum_probs=300.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+++|.|+|+|..+.+++.+++++|++++++ +++++++..+++|..+.. .|.|.+.+.+++.+ +|+|.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela~~--~DViT-- 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVL--DPDADAPAAQVADRVIVA-------AYDDPEALRELAAK--CDVIT-- 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEe--cCCCCCchhhcccceeec-------CCCCHHHHHHHHhh--CCEEE--
Confidence 468999999999999999999999999999 677788889999999875 38899999999965 89888
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~ 230 (537)
|+|..-..+..+.++.. .++ -|+++++....||...|++|+++|+|+|+| ..+.+.+++.++++++|+|+|+|...
T Consensus 68 ~EfE~V~~~aL~~l~~~-~~v-~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~--~~v~~~~el~~~~~~~g~p~VlKtr~ 143 (375)
T COG0026 68 YEFENVPAEALEKLAAS-VKV-FPSPDALRIAQDRLVEKQFLDKAGLPVAPF--QVVDSAEELDAAAADLGFPAVLKTRR 143 (375)
T ss_pred EeeccCCHHHHHHHHhh-cCc-CCCHHHHHHHhhHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCceEEEecc
Confidence 66633335666666666 444 489999999999999999999999999999 78999999999999999999999998
Q ss_pred CC-CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEE
Q 009323 231 GG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (537)
Q Consensus 231 g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~ 309 (537)
|+ .|+|.+++++.+++......... ....++|+||+-.+|+|+.+.++.+|++.++...+ .+++.......
T Consensus 144 gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~e-N~h~~gIl~~s 215 (375)
T COG0026 144 GGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPVAE-NVHRNGILRTS 215 (375)
T ss_pred ccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecccc-eeeecCEEEEE
Confidence 88 89999999999998876554321 13449999999989999999999899998886644 34555656667
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCC
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~ 389 (537)
.+|+. ++...+++..+++.+++++|+|.|++.+||+++.+|++++.|+.||++.+..+|...+.++.|+.++|..+|.|
T Consensus 216 iaPa~-i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glP 294 (375)
T COG0026 216 IAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLP 294 (375)
T ss_pred EecCc-CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCC
Confidence 78885 89999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHH
Q 009323 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (537)
Q Consensus 390 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~ 469 (537)
++. ......++++.+...+... .... .....|++++ ++|......+ .+.+|||-+.+.|.+++.
T Consensus 295 Lg~----~~~~~p~vMvNlLG~~~~~------~~~~--~~l~~p~~~l--H~YGK~e~R~--gRKmGHvn~~~~~~~~~~ 358 (375)
T COG0026 295 LGS----TTLLSPSVMVNLLGDDVPP------DDVK--AVLALPGAHL--HWYGKAEARP--GRKMGHVNVLGSDSDELE 358 (375)
T ss_pred CCC----ccccCceEEEEecCCCCch------hhhH--HHHhCCCCEE--EEecCccCCC--CCeeeeEEeecCCHHHHH
Confidence 864 2456678899988754321 1111 1122355554 4454444444 556999999999977777
Q ss_pred HHHHHhhhcc
Q 009323 470 ERMKRALNDT 479 (537)
Q Consensus 470 ~~~~~al~~~ 479 (537)
++........
T Consensus 359 ~~~~~l~~~~ 368 (375)
T COG0026 359 QLAALLPAKQ 368 (375)
T ss_pred HHHHhhhhhh
Confidence 6655544433
No 39
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=2.4e-38 Score=366.18 Aligned_cols=304 Identities=21% Similarity=0.326 Sum_probs=258.2
Q ss_pred CcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
.+||||+|+|.+ ++.++++++++|++|++++++++..+.....+|..+.- ..+.+.+++++
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~e--------p~~~e~vl~i~ 625 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFE--------PLTFEDVMNII 625 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEe--------cCCHHHHHHHH
Confidence 479999999975 67899999999999999988877766667788877642 35689999999
Q ss_pred HHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHH
Q 009323 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (537)
Q Consensus 140 ~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ 219 (537)
+++++|+|+|.+|... ...++..+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.+++++
T Consensus 626 ~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~--~~v~s~ee~~~~~~~ 702 (1050)
T TIGR01369 626 ELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATSVEEAVEFASE 702 (1050)
T ss_pred hhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCe--EEECCHHHHHHHHHh
Confidence 9999999999876421 2356788899999999999999999999999999999999999999 788999999999999
Q ss_pred hCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecc
Q 009323 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299 (537)
Q Consensus 220 ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~ 299 (537)
+|||+||||+.+.||+||.+|++.+|+.++++++...+ .+.++++|+||+|++|++++++.|+ |+++..+..+..
T Consensus 703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s----~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~ 777 (1050)
T TIGR01369 703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHI 777 (1050)
T ss_pred cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhC----CCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEee
Confidence 99999999999999999999999999999999876432 3468999999995599999999985 466554432211
Q ss_pred --cccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCH
Q 009323 300 --IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDL 377 (537)
Q Consensus 300 --~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl 377 (537)
...+........|+..++++..+++.+++.+++++||+.|++|+||+++++ ++|+||||||++++.++++.++|+|+
T Consensus 778 ~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~-~~yvIEvNpR~s~t~p~vs~atGi~l 856 (1050)
T TIGR01369 778 EEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDG-EVYVIEVNPRASRTVPFVSKATGVPL 856 (1050)
T ss_pred cccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECC-eEEEEEEeCCCCchHHHHHHHHCCCH
Confidence 111111223345665689999999999999999999999999999999864 59999999999998999999999999
Q ss_pred HHHHHHHHcCCCCC
Q 009323 378 IEEQIHVAMGGKLR 391 (537)
Q Consensus 378 ~~~~i~~a~G~~l~ 391 (537)
++.++++++|.++.
T Consensus 857 ~~~~~~~~lG~~l~ 870 (1050)
T TIGR01369 857 IKLATRVMLGKKLE 870 (1050)
T ss_pred HHHHHHHHcCCCcc
Confidence 99999999999875
No 40
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2e-37 Score=358.78 Aligned_cols=363 Identities=20% Similarity=0.303 Sum_probs=284.1
Q ss_pred CcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
.+||||+|+|+. ++.++++++++|+++++++++++..+.....+|..+.. ..+.+.+++++
T Consensus 555 ~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~e--------p~~~e~vl~I~ 626 (1068)
T PRK12815 555 KKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFE--------PLTLEDVLNVA 626 (1068)
T ss_pred CceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEc--------cCCHHHHHHHH
Confidence 589999999874 56789999999999999998888777777789987752 34689999999
Q ss_pred HHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHH
Q 009323 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (537)
Q Consensus 140 ~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ 219 (537)
+++++|+|+|.+|.. ....+++.+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.+++++
T Consensus 627 ~~e~~dgVI~~~g~~-~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~--~~~~s~ee~~~~~~~ 703 (1068)
T PRK12815 627 EAENIKGVIVQFGGQ-TAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPG--LTATDEEEAFAFAKR 703 (1068)
T ss_pred hhcCCCEEEEecCcH-HHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCe--EEeCCHHHHHHHHHh
Confidence 999999999987532 12456778899999999999999999999999999999999999999 688999999999999
Q ss_pred hCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecc
Q 009323 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299 (537)
Q Consensus 220 ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~ 299 (537)
+|||+||||+.+.||+|+.+|++.+|+..+++++. ....++++|+||+| .|++++++.|+. .++..+..+..
T Consensus 704 igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G-~E~~Vd~i~dg~-~v~i~~i~e~~ 775 (1068)
T PRK12815 704 IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDG-KEYEVDAISDGE-DVTIPGIIEHI 775 (1068)
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecC-ceEEEEEEEcCC-ceEEeeEEEEe
Confidence 99999999999999999999999999999998762 12478999999999 899999999865 44333322211
Q ss_pred c--ccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCH
Q 009323 300 I--QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDL 377 (537)
Q Consensus 300 ~--~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl 377 (537)
. ..+........|+..++++..+++.+++.+++++||+.|++++||++++++ +|++|||||++++.++.+.++|+|+
T Consensus 776 e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~-~yviEiNpR~s~t~~~~skatGv~l 854 (1068)
T PRK12815 776 EQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDE-IYVLEVNPRASRTVPFVSKATGVPL 854 (1068)
T ss_pred eccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCc-EEEEEEeCCCCccHHHHHHHHCCCH
Confidence 1 111111223345555899999999999999999999999999999998654 9999999999998898999999999
Q ss_pred HHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEE
Q 009323 378 IEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGK 457 (537)
Q Consensus 378 ~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~ 457 (537)
+++++++++|.++..... . ..+.|..+.+... .|-.+.-++ -.....+.+...| .|.
T Consensus 855 ~~~~~~~~lG~~l~~~~~----~--------------~~~~~~~~~~~vk-~p~f~f~~~---~~~~~~lg~~m~s-tGe 911 (1068)
T PRK12815 855 AKLATKVLLGKSLAELGY----P--------------NGLWPGSPFIHVK-MPVFSYLKY---PGVDNTLGPEMKS-TGE 911 (1068)
T ss_pred HHHHHHHHcCCChhhccc----c--------------cccCCCCCeEEEE-eccCChhHc---ccCCCccCCcceE-cce
Confidence 999999999998742210 0 0122333333221 111111111 0011123344444 799
Q ss_pred EEEEcCCHHHHHHHHHHhh
Q 009323 458 LIVWAPTREKAIERMKRAL 476 (537)
Q Consensus 458 vi~~g~~~~ea~~~~~~al 476 (537)
++..|.|.+||+.|+..+.
T Consensus 912 ~~~~~~~~~~a~~k~~~~~ 930 (1068)
T PRK12815 912 VMGIDKDLEEALYKGYEAS 930 (1068)
T ss_pred eEeccCCHHHHHHHHHHhc
Confidence 9999999999999988775
No 41
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=9e-37 Score=321.42 Aligned_cols=387 Identities=18% Similarity=0.212 Sum_probs=278.1
Q ss_pred EEEcCcHHHHHHHHHHHHcCC--CEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009323 75 LVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 75 Li~g~g~~a~~ii~aa~~~G~--~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g 152 (537)
||+|+|.....++.++++... ++++. ..+ +.....++.+.++ . -++.|.+.|+++|++.++|+|+++.+
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~~--pgn---~g~~~~~~~~~vp---~-~~~~d~~~l~~~a~~~~id~vvvg~E 71 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFCA--PGN---AGIATSGDATCVP---D-LDISDSAAVISFCRKWGVGLVVVGPE 71 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEEC--CCC---HHHhhhccceeec---C-CCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 789999999999999999863 33333 222 3344445444331 1 24788999999999999999998875
Q ss_pred ccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCC
Q 009323 153 FLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (537)
Q Consensus 153 ~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g 231 (537)
. +. +.+++.++..|++++||+.+++++++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+||||..+
T Consensus 72 ~--~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~--~~~~~~~e~~~~~~~~g~PvVVKp~~~ 147 (434)
T PLN02257 72 A--PLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKY--ETFTDPAAAKKYIKEQGAPIVVKADGL 147 (434)
T ss_pred h--HHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 3 32 467788889999999999999999999999999999999999998 678999999999999999999999999
Q ss_pred CCCccEEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeee-c-ccc-----c
Q 009323 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-C-SIQ-----R 302 (537)
Q Consensus 232 ~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~-~-~~~-----~ 302 (537)
++|+||+++++.+|+.++++.+... ..|+ +..++|||||+| +|++++++.|+. .++.+.... . .+. .
T Consensus 148 ~~GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl~~~~dhkr~~d~d~g~ 223 (434)
T PLN02257 148 AAGKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGP 223 (434)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEEEeeeecccccCCCCCC
Confidence 9999999999999999999887532 2243 368999999999 799999998855 555554321 1 010 1
Q ss_pred ccceeEEEcCCCCCCHHHHHHHH-HHHH---HHHHHcC--CcceeEEEEEEe-CCCCEEEEEEecCCCCc-cccchhhcC
Q 009323 303 RNQKLLEEAPSPALTPELRKAMG-DAAV---AAAASIG--YIGVGTVEFLLD-ERGSFYFMEMNTRIQVE-HPVTEMISS 374 (537)
Q Consensus 303 ~~~~~~~~~p~~~l~~~~~~~i~-~~a~---~i~~alg--~~G~~~vEf~~~-~~g~~~~lEiNpR~~g~-~~~~~~~~G 374 (537)
+......++|++.+++++.+++. +++. +.+++.| |.|++++||+++ ++|++||||+|+|+|.. +..+...++
T Consensus 224 ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~ 303 (434)
T PLN02257 224 NTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLE 303 (434)
T ss_pred CCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhc
Confidence 12234557788778888888754 4444 4444555 559999999999 77889999999999865 555555689
Q ss_pred CCHHHHHHHHHcCCCCCCCCCccccc-eeEEEEEEeeCCCCCCCCCCCCc-eeEEEcCC--CCeEEE-eeecc--CCCcc
Q 009323 375 VDLIEEQIHVAMGGKLRYKQEDIVLQ-GHSIECRINAEDPFKNFRPGPGR-ITAYLPAG--GPFVRM-DSHVY--PDYVV 447 (537)
Q Consensus 375 idl~~~~i~~a~G~~l~~~~~~~~~~-g~ai~~ri~ae~~~~~f~p~~G~-i~~~~~~~--~~~vr~-~~~~~--~G~~v 447 (537)
.||++++++++.|...... +..+ +.++.+ +.+..... ..+..|. |..+.... .+++.+ ..... .+.++
T Consensus 304 ~Dl~~~~~~~~~g~l~~~~---~~~~~~~av~v-v~a~~gYp-~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~ 378 (434)
T PLN02257 304 SDLAQVLLAACKGELSGVS---LTWSPDSAMVV-VMASNGYP-GSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNV 378 (434)
T ss_pred CCHHHHHHHHHcCCCCCCC---ceECCCceEEE-EEcCCCCC-CCCCCCCEeeCCccccccCCCCEEEECCceEccCCEE
Confidence 9999999999999743221 2222 344433 33332111 1122232 22232111 134332 11111 12222
Q ss_pred CCCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 448 PPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 448 ~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
-+ .+.++..|+++|+|.++|.++++++++.+.+.|.
T Consensus 379 ~t-~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~ 414 (434)
T PLN02257 379 VA-AGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGG 414 (434)
T ss_pred EE-CCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 22 2457889999999999999999999999999985
No 42
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.3e-37 Score=359.37 Aligned_cols=365 Identities=20% Similarity=0.315 Sum_probs=281.3
Q ss_pred CCcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHH
Q 009323 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~ 138 (537)
..|||||+|+|+. +++++++++++|+++++++++++..+....++|..+. . ..+.+.++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~-e-------~~~~e~v~~i 624 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYF-E-------PLTLEDVLEI 624 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheee-c-------CCCHHHHHHH
Confidence 3589999999883 4788999999999999998877776677788888664 2 3468999999
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHH
Q 009323 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 139 a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~ 218 (537)
++++++|+|++.+|.... ..++..+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.++++
T Consensus 625 ~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~--~~~~s~ee~~~~~~ 701 (1066)
T PRK05294 625 IEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPN--GTATSVEEALEVAE 701 (1066)
T ss_pred HHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCe--EEECCHHHHHHHHH
Confidence 999999999987653222 356788899999999999999999999999999999999999999 67899999999999
Q ss_pred HhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeec
Q 009323 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298 (537)
Q Consensus 219 ~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~ 298 (537)
++|||+||||+.++||+|+.+|++.+|+.++++.+...+ .+.+++||+||+|.+|++|+++.|+. .++.....+.
T Consensus 702 ~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s----~~~~vlIEefI~G~~E~sV~~v~dg~-~v~i~~i~e~ 776 (1066)
T PRK05294 702 EIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVS----PDHPVLIDKFLEGAIEVDVDAICDGE-DVLIGGIMEH 776 (1066)
T ss_pred hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhC----CCCcEEEEecCCCCEEEEEEEEecCC-eEEEeeeEEe
Confidence 999999999999999999999999999999998875432 34689999999995599999998765 3433222111
Q ss_pred --ccccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCC
Q 009323 299 --SIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 376 (537)
Q Consensus 299 --~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gid 376 (537)
....+........|+..++++..+++.+++.+++++||+.|++++||+++++ ++||+|||||++++.++++.++|+|
T Consensus 777 i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~-~~yViEiNpR~s~t~~~~s~atGi~ 855 (1066)
T PRK05294 777 IEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDD-EVYVIEVNPRASRTVPFVSKATGVP 855 (1066)
T ss_pred eeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECC-eEEEEEEecCCCccHHHHHHHhCcc
Confidence 0111111222334655689999999999999999999999999999999864 5999999999998889999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccE
Q 009323 377 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLG 456 (537)
Q Consensus 377 l~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig 456 (537)
+.+..+++++|.++..... . . .+.| +.+. +..|-.+.-++ -.....+.+...| .|
T Consensus 856 ~~~~~~~~~lG~~l~~~~~--~-~---------------~~~~--~~~~-vk~p~fs~~~~---~~~~~~lg~~m~s-tg 910 (1066)
T PRK05294 856 LAKIAARVMLGKKLAELGY--T-K---------------GLIP--PYVA-VKEAVFPFNKF---PGVDPLLGPEMKS-TG 910 (1066)
T ss_pred HHHHHHHHHcCCChhhcCC--C-c---------------cCCC--CceE-EEeccCChhhc---cCCCCccCceeee-cC
Confidence 9999999999998753210 0 0 0111 1111 11111000010 0011123333344 68
Q ss_pred EEEEEcCCHHHHHHHHHHhh
Q 009323 457 KLIVWAPTREKAIERMKRAL 476 (537)
Q Consensus 457 ~vi~~g~~~~ea~~~~~~al 476 (537)
.++..|.|.+||+.|+..+.
T Consensus 911 e~~~~~~~~~~a~~k~~~~~ 930 (1066)
T PRK05294 911 EVMGIDRTFGEAFAKAQLAA 930 (1066)
T ss_pred ceeecCCCHHHHHHHHHHhc
Confidence 89999999999999988775
No 43
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=2.1e-36 Score=321.50 Aligned_cols=391 Identities=18% Similarity=0.137 Sum_probs=271.7
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc--CCCEEEEecCCCCCChh--hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~--G~~vv~v~~~~d~~~~~--~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
+||||+|+|.....++.++++. |++++++..+.++.... ..++|+.+.+ +..|.+.++++|++.++|+|
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~-------~~~d~~~l~~~a~~~~id~V 73 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIG-------NINSPEEVKKVAKEVNPDLV 73 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEec-------CCCCHHHHHHHHHHhCCCEE
Confidence 4899999999999999999998 99999885433322111 1223444544 36789999999999999999
Q ss_pred EeCCCcccccH---HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcE
Q 009323 148 HPGYGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (537)
Q Consensus 148 ~p~~g~~se~~---~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~Pv 224 (537)
+++. |.+ .+++.++.+|++++||+.+++++++||..+|++|+++|||+|+.+ ..+++.+++.++++.. +|+
T Consensus 74 i~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~-~~~~~~~ea~~~~~~~-~Pv 147 (486)
T PRK05784 74 VIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY-KVFYDVEEAAKFIEYG-GSV 147 (486)
T ss_pred EECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc-eEeCCHHHHHHHHhhc-CCE
Confidence 9976 443 566788999999999999999999999999999999999997432 6778999999888665 699
Q ss_pred EEEecCCCCCccEEEeCCHHH-----HHHHHHHHHHHH---HHhcC--CCcEEEEeccCCCcEEEEEEEEeCCCcEEEEe
Q 009323 225 MIKATAGGGGRGMRLAKEPDE-----FVKLLQQAKSEA---AAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (537)
Q Consensus 225 vvKp~~g~gg~Gv~~v~~~~e-----l~~~~~~~~~~~---~~~~~--~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~ 294 (537)
||||..++||+||++|++.++ +.+++..+.... ...|+ +..++|||||.| .|++|+++.|+. .++.+.
T Consensus 148 VVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~ 225 (486)
T PRK05784 148 AIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLP 225 (486)
T ss_pred EEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEEEEEEECCC-eEEEee
Confidence 999999999999999999873 445553322221 12343 368999999999 899999998754 444332
Q ss_pred -eeecc-ccc-----ccceeEEEcC----CCCCCHHHHHHHHHHHHHHHHHcC------CcceeEEEEEEe-CCCCEEEE
Q 009323 295 -ERDCS-IQR-----RNQKLLEEAP----SPALTPELRKAMGDAAVAAAASIG------YIGVGTVEFLLD-ERGSFYFM 356 (537)
Q Consensus 295 -~r~~~-~~~-----~~~~~~~~~p----~~~l~~~~~~~i~~~a~~i~~alg------~~G~~~vEf~~~-~~g~~~~l 356 (537)
..+.. ... .......++| .|.++++..+++.+++.+.+++++ |+|+.|+||+++ ++| +++|
T Consensus 226 ~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~vI 304 (486)
T PRK05784 226 LAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PTVI 304 (486)
T ss_pred eeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cEEE
Confidence 22211 110 1112333566 666778777777777777666654 359999999999 888 9999
Q ss_pred EEecCCCCc--cccchhhcCCCHHHHHHHHHcCCCCCCCCCccccc-eeEEEEEEeeCCCC-CCCCCCCCceeEEEcC--
Q 009323 357 EMNTRIQVE--HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQ-GHSIECRINAEDPF-KNFRPGPGRITAYLPA-- 430 (537)
Q Consensus 357 EiNpR~~g~--~~~~~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~-g~ai~~ri~ae~~~-~~f~p~~G~i~~~~~~-- 430 (537)
|+|+|+++. ..+... ++.|+++.++.++.|..-.. ++..+ ..++. .+.+.... ..+.|..|......+.
T Consensus 305 E~n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~l~~~---~~~~~~~~~~~-vv~as~gYp~~~~~~~g~~i~~~~~~~ 379 (486)
T PRK05784 305 EYYSRFGDPEASNIIPR-IESDFGELFELAATGKLSKA---KIKFNEEPSVV-KAIAPLGYPLSRDLASGRRIVVDLDKI 379 (486)
T ss_pred EEecccCCchHHHHHHh-ccCCHHHHHHHHHcCCCCCC---CeeecCCceEE-EEECCCCCCCcccCCCCCEEECCcccc
Confidence 999999764 234444 56699999999999963221 12222 34443 44433211 1111445654433221
Q ss_pred CCCeEEE-eeecc-CCCccCCCCCcccEEEEEEcCCHHHHHHHHHHhhhcc-eEeee
Q 009323 431 GGPFVRM-DSHVY-PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDT-IITGV 484 (537)
Q Consensus 431 ~~~~vr~-~~~~~-~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~-~i~g~ 484 (537)
..+++.+ ...+. .+.++-+ .+.++..|++.|+|.++|.++++++++.+ .++|.
T Consensus 380 ~~~~~~v~~ag~~~~~~~~~t-~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~ 435 (486)
T PRK05784 380 KEEGCLVFFGSVELEGGQLIT-KGSRALEIVAIGKDFEEAYEKLERCISYVSSDTKL 435 (486)
T ss_pred ccCCCEEEECCceeeCCEEEE-cCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCC
Confidence 1123222 11111 1222222 14468899999999999999999999999 88875
No 44
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=312.29 Aligned_cols=294 Identities=19% Similarity=0.236 Sum_probs=236.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcC--CCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G--~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
|+||||+|.|... .+++++++.| ++|++++. ++.++....+|+.+.++ ..++....+.++++++++++|+|+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~--~~~~~~~~~~d~~~~~p---~~~~~~~~~~l~~~~~~~~id~ii 74 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADI--SELAPALYFADKFYVVP---KVTDPNYIDRLLDICKKEKIDLLI 74 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECC--CCcchhhHhccCcEecC---CCCChhHHHHHHHHHHHhCCCEEE
Confidence 4799999988776 8999999995 99999854 45667778899888763 222233578999999999999999
Q ss_pred eCCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHH--HHHHhCCcEE
Q 009323 149 PGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK--LADELGFPVM 225 (537)
Q Consensus 149 p~~g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~--~~~~ig~Pvv 225 (537)
|+.+...+. +...+.++..|+++++|+++++..+.||..++++|+++|+|+|++ ..+.+.+++.+ +.++++||+|
T Consensus 75 ~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~~~P~v 152 (326)
T PRK12767 75 PLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKS--YLPESLEDFKAALAKGELQFPLF 152 (326)
T ss_pred ECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCE--EcccCHHHHHhhhhcccCCCCEE
Confidence 987532111 234456677899888999999999999999999999999999998 57888888877 5578899999
Q ss_pred EEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccc
Q 009323 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ 305 (537)
Q Consensus 226 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~ 305 (537)
+||..|+||+|++++++.+|+.+++++. ..+++|+||+| +|+++.++.+.+|+++.+..++........
T Consensus 153 iKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~~~~~~~g~ 221 (326)
T PRK12767 153 VKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKRIEVRAGE 221 (326)
T ss_pred EEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEeeeeeecCCc
Confidence 9999999999999999999999888653 48999999999 999999999877888877554431111111
Q ss_pred eeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHH
Q 009323 306 KLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 385 (537)
Q Consensus 306 ~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a 385 (537)
...... . ..+++.+.+.++++++|+.|++++||++++ |++||+|||||++|+.++. ..+|+|+.+++++.+
T Consensus 222 ~~~~~~----~---~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~~~~-~~~G~n~~~~~~~~~ 292 (326)
T PRK12767 222 TSKGVT----V---KDPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGYPLS-YMAGANEPDWIIRNL 292 (326)
T ss_pred eeEEEE----c---CCHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcchhh-HhhCCCHHHHHHHHH
Confidence 111011 1 125788999999999999999999999997 5699999999999887654 568999999999999
Q ss_pred cCCCCCC
Q 009323 386 MGGKLRY 392 (537)
Q Consensus 386 ~G~~l~~ 392 (537)
+|+++..
T Consensus 293 ~g~~~~~ 299 (326)
T PRK12767 293 LGGENEP 299 (326)
T ss_pred cCCCCCc
Confidence 9998753
No 45
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3.3e-36 Score=313.59 Aligned_cols=336 Identities=16% Similarity=0.196 Sum_probs=245.3
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccC
Q 009323 128 SYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL 207 (537)
Q Consensus 128 ~~~~~~~i~~~a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~ 207 (537)
++.|.+.++++|++.++|+|+++.+.. -...+++.+++.|++++||+++++.+++||..+|++|+++|||+|++ ..+
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~-l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~--~~~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQP-LIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADY--KEV 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHH-HHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCE--EEE
Confidence 478899999999999999999877541 12356788899999999999999999999999999999999999998 678
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCC
Q 009323 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (537)
Q Consensus 208 ~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~ 287 (537)
.+.+++.+++++++||+||||..++||+||++|++.+|+.++++.+.... .++.++||+||+| +|+++.++.+++
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence 89999999999999999999999999999999999999999998875321 1358999999999 999999998855
Q ss_pred CcEEEEe--eeec------ccccccceeEEEcCCCCCCHHHHHHH-HHHHHHHHHHc---CC--cceeEEEEEEeCCCCE
Q 009323 288 GNVVHFG--ERDC------SIQRRNQKLLEEAPSPALTPELRKAM-GDAAVAAAASI---GY--IGVGTVEFLLDERGSF 353 (537)
Q Consensus 288 g~v~~~~--~r~~------~~~~~~~~~~~~~p~~~l~~~~~~~i-~~~a~~i~~al---g~--~G~~~vEf~~~~~g~~ 353 (537)
..+.+. ..+. ....+......++|.+.++++..+++ .+++.+++++| |+ .|++++||+++++| +
T Consensus 164 -~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~ 241 (379)
T PRK13790 164 -LAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-P 241 (379)
T ss_pred -EEEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-e
Confidence 222221 1110 00011122334567766787766555 56666666666 54 59999999999888 9
Q ss_pred EEEEEecCCCCc-cccchhhcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCC-ceeEEEcCC
Q 009323 354 YFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPG-RITAYLPAG 431 (537)
Q Consensus 354 ~~lEiNpR~~g~-~~~~~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G-~i~~~~~~~ 431 (537)
||+|+|+|+++. ..+....+|+|+++.++++++|.++.+... ...++.+.+.+... . ..+..| .|..+ +.
T Consensus 242 ~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~~----~~~~~~v~~~s~gy-p-~~~~~~~~i~~~-~~- 313 (379)
T PRK13790 242 KVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWK----NESIVGVMLASKGY-P-DAYEKGHKVSGF-DL- 313 (379)
T ss_pred EEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeEc----CCCEEEEEEccCCC-C-CCCCCCCeeeec-CC-
Confidence 999999999764 334445589999999999999987654432 22344444422211 0 112222 23222 11
Q ss_pred CCeEEEeeec--cCCCccCCCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 432 GPFVRMDSHV--YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 432 ~~~vr~~~~~--~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
....+...+ ..|..++. +.++..|++.|.|.+||.++++++++.+.++|.
T Consensus 314 -~~~~~~~~~~~~~~~~~~~--ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~ 365 (379)
T PRK13790 314 -NENYFVSGLKKQGDTFVTS--GGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHL 365 (379)
T ss_pred -CCeEEECCccccCCeEEEC--CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 111111111 12222221 357899999999999999999999999999984
No 46
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.1e-32 Score=270.70 Aligned_cols=390 Identities=19% Similarity=0.221 Sum_probs=280.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCC-CCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSY-LLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~-~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+||||+|+|..-..|+.++.+.+....++....++.... +...+. . +. .+.+.|+++|++.++|.++.|
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~-----~~~~~~--~---~~~~~~~~lv~fA~~~~idl~vVG 70 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL-----EAYLVN--I---EIDTDHEALVAFAKEKNVDLVVVG 70 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccch-----hhhhcc--C---ccccCHHHHHHHHHHcCCCEEEEC
Confidence 489999999999999999998875554444344433221 122221 1 12 578999999999999999988
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~ 230 (537)
.+..- ...+.+.+++.||+++||+.++.++-.+|..+|++|+++|||++.| ..+++.+++.+++++.|.|+||||..
T Consensus 71 PE~pL-~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~f~~~e~a~ayi~~~g~piVVKadG 147 (428)
T COG0151 71 PEAPL-VAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EVFTDPEEAKAYIDEKGAPIVVKADG 147 (428)
T ss_pred CcHHH-hhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cccCCHHHHHHHHHHcCCCEEEeccc
Confidence 74211 1356788999999999999999999999999999999999999998 78899999999999999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCC--CcEEEEeccCCCcEEEEEEEEeCCCcEEEEee-eec------ccc
Q 009323 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN--DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDC------SIQ 301 (537)
Q Consensus 231 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~--~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~-r~~------~~~ 301 (537)
-.+|+||.++.+.+|..++++.+... ..|++ ..++||||++| .|+|++++.|++ +++.+.. .|. ...
T Consensus 148 LaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p~aQDhKra~dgD~G 223 (428)
T COG0151 148 LAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMPTAQDHKRAYDGDTG 223 (428)
T ss_pred ccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEecccc-eEEEEEEEEcCC-eEEECccccccccccCCCCC
Confidence 99999999999999999998887654 23442 46999999999 999999999977 6665532 111 011
Q ss_pred cccceeEEEcCCCCCCHHHHHHHH-HHHHHHHHHc---C--CcceeEEEEEEeCCCCEEEEEEecCCCCc-cccchhhcC
Q 009323 302 RRNQKLLEEAPSPALTPELRKAMG-DAAVAAAASI---G--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISS 374 (537)
Q Consensus 302 ~~~~~~~~~~p~~~l~~~~~~~i~-~~a~~i~~al---g--~~G~~~vEf~~~~~g~~~~lEiNpR~~g~-~~~~~~~~G 374 (537)
.+.-....++|+|.+++++.+++. ++....++.+ | |.|+.-..|+++++| +++||.|.|++-- ...+-...-
T Consensus 224 PNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~ 302 (428)
T COG0151 224 PNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLE 302 (428)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhcc
Confidence 222235557899999998777666 6665555554 3 669999999999999 9999999999432 223333456
Q ss_pred CCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEc-CCCCeEEE-e--eeccCCC-ccCC
Q 009323 375 VDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLP-AGGPFVRM-D--SHVYPDY-VVPP 449 (537)
Q Consensus 375 idl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~-~~~~~vr~-~--~~~~~G~-~v~~ 449 (537)
-||++..+.++.|.--.... .....+.++.+-+-++.+-. .|..|......+ ....+..+ . +....|. .++.
T Consensus 303 sdl~~~~~a~~~g~L~~~~~-~~~~~~a~v~vvlA~~GYP~--~~~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~lvt~ 379 (428)
T COG0151 303 SDLVELLLAAVDGKLDEVEI-LFWDKGAAVGVVLAAEGYPG--DPEKGDVITGDEEAEEEGAKVFHAGVKLDDGGQLVTS 379 (428)
T ss_pred ccHHHHHHHHHhCCccccch-hhccCCceEEEEEecCCCCC--CCCCCCEEecChhhcccCcEEEEeeEeccCCceEEec
Confidence 79999999999985322110 01112344444443332211 255665444422 11113222 1 2222222 3332
Q ss_pred CCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 450 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 450 ~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
+++.=.|++.|+|.+||.++++++++.+..+|.
T Consensus 380 --GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~ 412 (428)
T COG0151 380 --GGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGL 412 (428)
T ss_pred --CCeEEEEEecCCCHHHHHHHHHHHHhhcCCCCc
Confidence 445668899999999999999999999999886
No 47
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.1e-32 Score=278.14 Aligned_cols=273 Identities=22% Similarity=0.288 Sum_probs=210.1
Q ss_pred CcEEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009323 71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~ 141 (537)
++||.|+-+|.+ +..+++++++.||+++.++.+.. . ++....+
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~--~--------------------------~~~~l~~ 54 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK--E--------------------------LVAKLLE 54 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch--h--------------------------HHHHhhc
Confidence 347777766654 78899999999999988842110 0 1111223
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh
Q 009323 142 RGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220 (537)
Q Consensus 142 ~~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i 220 (537)
.++|.|++. +|...|+..++..++.+|++++|++++++..+.||..+|++|+++|||+|++ ..+.+.. ...+.+
T Consensus 55 ~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~--~~~~~~~---~~~~~~ 129 (296)
T PRK14569 55 LKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMA--KFLTDKL---VAEDEI 129 (296)
T ss_pred cCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCe--EEEchhh---hhHhhc
Confidence 579999987 4666788999999999999999999999999999999999999999999998 3444321 235678
Q ss_pred CCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeee--c
Q 009323 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD--C 298 (537)
Q Consensus 221 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~--~ 298 (537)
+||+||||..|++|.|+.+|++.+||..+++.+.. .+.++||+||+| +|+++.++.++....+.+.... .
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~~~~~~~ 201 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-KEITVAIVNDEVYSSVWIEPQNEFY 201 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-EEEEEEEECCcCcceEEEecCCCcC
Confidence 99999999999999999999999999999987632 257999999999 9999999865432222221110 0
Q ss_pred cc-ccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCc----cccchhhc
Q 009323 299 SI-QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMIS 373 (537)
Q Consensus 299 ~~-~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~----~~~~~~~~ 373 (537)
.. ..+..+.....|+. ++++..+++.+.+.+++++||+.|++++||+++++|++||+|||||++-+ .+......
T Consensus 202 ~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~ 280 (296)
T PRK14569 202 DYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAE 280 (296)
T ss_pred ChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHHc
Confidence 11 11122334456775 78888899999999999999999999999999988899999999999754 34455568
Q ss_pred CCCHHHHHHHHH
Q 009323 374 SVDLIEEQIHVA 385 (537)
Q Consensus 374 Gidl~~~~i~~a 385 (537)
|+|+.++..++.
T Consensus 281 G~~~~~li~~ii 292 (296)
T PRK14569 281 GVDFDSFVKRII 292 (296)
T ss_pred CCCHHHHHHHHH
Confidence 999888766554
No 48
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=6.1e-33 Score=284.63 Aligned_cols=299 Identities=20% Similarity=0.250 Sum_probs=220.1
Q ss_pred CCcEEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHH
Q 009323 70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI 140 (537)
Q Consensus 70 ~~~kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~ 140 (537)
|.+||.|+-+|.+ |..+++++++.||+++.++-+.+............+.- +....+++. +.....
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~ 76 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELAD-DDNDKEDLS----LLILPS 76 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhccc-ccccccccc----hhcccc
Confidence 4568888877654 78899999999999999975544110000000000000 000000110 111111
Q ss_pred Hc--CCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHH----H
Q 009323 141 SR--GCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE----A 213 (537)
Q Consensus 141 ~~--~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~----~ 213 (537)
.. ++|+|+|. +|...|+..+..+++.+|++++|++..+...+.||..+|++|+++|||+|++ ..+.+.++ +
T Consensus 77 ~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~--~~~~~~~~~~~~~ 154 (333)
T PRK01966 77 GGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPY--VVLTRGDWEEASL 154 (333)
T ss_pred ccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCE--EEEeccccchhhH
Confidence 22 69999999 6888899999999999999999999999999999999999999999999998 44444332 3
Q ss_pred HHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEE
Q 009323 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~ 293 (537)
..+.+.++||+||||..|++|.||.+|++.+|+.++++.+.+. +..++||+||+| +|+++.++.+ ++.+..+
T Consensus 155 ~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~ 226 (333)
T PRK01966 155 AEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN-DPKASVP 226 (333)
T ss_pred HHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC-CCeEccc
Confidence 5566789999999999999999999999999999999887643 378999999999 9999999986 3444433
Q ss_pred eeeecc--cccccce-----eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCc-
Q 009323 294 GERDCS--IQRRNQK-----LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE- 365 (537)
Q Consensus 294 ~~r~~~--~~~~~~~-----~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~- 365 (537)
.+.... +.....+ .....|+. ++++..+++.+++.+++++||+.|++++||+++++|++||+|||+|++.+
T Consensus 227 ~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~ 305 (333)
T PRK01966 227 GEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFTP 305 (333)
T ss_pred EEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCCc
Confidence 333221 1111111 23446775 89999999999999999999999999999999988999999999999754
Q ss_pred ---cccchhhcCCCHHHHHHHH
Q 009323 366 ---HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 366 ---~~~~~~~~Gidl~~~~i~~ 384 (537)
.+......|+|+.+..-++
T Consensus 306 ~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 306 ISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred ccHHHHHHHHcCCCHHHHHHHH
Confidence 2334456899887776544
No 49
>PRK06524 biotin carboxylase-like protein; Validated
Probab=100.00 E-value=3.4e-32 Score=283.53 Aligned_cols=252 Identities=19% Similarity=0.262 Sum_probs=203.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHH
Q 009323 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE 212 (537)
Q Consensus 133 ~~i~~~a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~ 212 (537)
.++++..++.+...... |++|+..++.+++.+|++++||+.+++..+.||..+|++++++|||+|++....+.+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~---fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee 170 (493)
T PRK06524 94 PETLEFIKRRGPGGKAC---FVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE 170 (493)
T ss_pred HHHHHHHHhhCCCCceE---EecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence 44556666666532222 788999999999999999999999999999999999999999999999995323567777
Q ss_pred HHHHHHH--hCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcE
Q 009323 213 AVKLADE--LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 290 (537)
Q Consensus 213 ~~~~~~~--ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v 290 (537)
+.+.++. +||||||||..|++|+|+++|++.+|+..+++.+. +...++||+||.| +|++|+++.+.+|.+
T Consensus 171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~G-rEitVev~vd~dG~V 242 (493)
T PRK06524 171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIRN-VEVCIEACVTRHGTV 242 (493)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccCc-EEEEEEEEEeCCCCE
Confidence 7777765 99999999999999999999999999998876643 2467999999999 999999999888876
Q ss_pred EEEee------eecccccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceeEEEEEEeC-CCCEEEEEEec
Q 009323 291 VHFGE------RDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDE-RGSFYFMEMNT 360 (537)
Q Consensus 291 ~~~~~------r~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~al---g~~G~~~vEf~~~~-~g~~~~lEiNp 360 (537)
+.... ++....+........+|+. +++++.+++.+.|.++.++| |+.|++++||+++. +|++||+||||
T Consensus 243 v~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINP 321 (493)
T PRK06524 243 IGPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 321 (493)
T ss_pred EeccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeC
Confidence 54311 1111111111223467885 99999999999999999998 89999999999994 58899999999
Q ss_pred CCCCccccchhhc----CCCHHHHHHHHHcCCCCCCCCCc
Q 009323 361 RIQVEHPVTEMIS----SVDLIEEQIHVAMGGKLRYKQED 396 (537)
Q Consensus 361 R~~g~~~~~~~~~----Gidl~~~~i~~a~G~~l~~~~~~ 396 (537)
|++|+++++++++ +.+++..+++..+|.|..+.-+.
T Consensus 322 R~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~~~~~ 361 (493)
T PRK06524 322 RLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELDIEE 361 (493)
T ss_pred CcccccccchhhhccCCChhHHHHHHHHHhCCCceecHHH
Confidence 9999999887743 56777788888999998665443
No 50
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=6.6e-32 Score=274.14 Aligned_cols=277 Identities=23% Similarity=0.333 Sum_probs=215.5
Q ss_pred CCCcEEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 69 CRQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 69 ~~~~kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
+|.++|.|+-+|.. +..++++++++|+++++++.+.+ +++.+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------------------------~~~~~ 52 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------IAAQL 52 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------------------------hHHHh
Confidence 45668888875553 68999999999999999843311 12233
Q ss_pred HHcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHH
Q 009323 140 ISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 140 ~~~~~d~V~p~~-g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~ 218 (537)
+..++|+|++.+ |...++..+...++..|++++|++..++..+.||..++++|+++|||+|++ ..+.+.+++.++++
T Consensus 53 ~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~~~~~~~~~~~~~ 130 (304)
T PRK01372 53 KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPW--IVLTREEDLLAAID 130 (304)
T ss_pred ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCE--EEEeCcchHHHHHh
Confidence 445799999873 445577788899999999999999999999999999999999999999999 67888888888889
Q ss_pred HhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeee-
Q 009323 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD- 297 (537)
Q Consensus 219 ~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~- 297 (537)
+++||+||||..|+||+|+.++++.+|+.++++++... ...+++|+||+| +|+++.++.+....++......
T Consensus 131 ~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~E~~v~vi~~~~~~~~~~~~~~~ 203 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGKALPVIEIVPAGE 203 (304)
T ss_pred hcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcccCC-EEEEEEEECCCccceEEEEecCC
Confidence 99999999999999999999999999999988776422 368999999999 9999999866433222221110
Q ss_pred -cccccc--cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCc----cccch
Q 009323 298 -CSIQRR--NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTE 370 (537)
Q Consensus 298 -~~~~~~--~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~----~~~~~ 370 (537)
+.+... ........|+ .++++..+++.+.+.++++++|+.|++++||+++++|++||+|+|+|++.. .+...
T Consensus 204 ~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~~~~ 282 (304)
T PRK01372 204 FYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVPMAA 282 (304)
T ss_pred EEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHHHHHH
Confidence 011100 1112334555 388899999999999999999999999999999988999999999998653 22233
Q ss_pred hhcCCCHHHHHHHH
Q 009323 371 MISSVDLIEEQIHV 384 (537)
Q Consensus 371 ~~~Gidl~~~~i~~ 384 (537)
...|+|+.+.+..+
T Consensus 283 ~~~g~~~~~~~~~i 296 (304)
T PRK01372 283 RAAGISFSELVDRI 296 (304)
T ss_pred HHcCCCHHHHHHHH
Confidence 34599877766554
No 51
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=100.00 E-value=1.2e-31 Score=269.03 Aligned_cols=295 Identities=22% Similarity=0.276 Sum_probs=236.2
Q ss_pred EEEcCc-HHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009323 75 LVANRG-EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 75 Li~g~g-~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~ 153 (537)
+..|+| ..+..+++.+|+. -.+.++.++.++......+||+++.. |. ++...++.++++|+++++|+++|++..
T Consensus 2 iwfn~~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~e-P~---~~~~yv~~~l~~C~~~~Idv~~P~~~~ 76 (329)
T PF15632_consen 2 IWFNRGFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLE-PA---DGEEYVDWCLDFCKEHGIDVFVPGRNR 76 (329)
T ss_pred EEecCCCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeec-CC---CHHHHHHHHHHHHHHhCCeEEEcCccH
Confidence 344544 4578888999886 55556666888888999999999975 33 334457899999999999999999753
Q ss_pred ccccHHHHHHHHHCCCceeC-CCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCc---EEEEec
Q 009323 154 LAENAVFVEMCREHGINFIG-PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP---VMIKAT 229 (537)
Q Consensus 154 ~se~~~~a~~~e~~gi~~~G-p~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~P---vvvKp~ 229 (537)
. ..+...+.+++.|+.+.- ++.+++..+.||..+.+.+++.|+|+|++ ..+++.++++.+.+++++| +.|||.
T Consensus 77 ~-~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~--~~v~t~~el~~a~~~l~~~~~~~CvKP~ 153 (329)
T PF15632_consen 77 E-LLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPY--WRVRTADELKAAYEELRFPGQPLCVKPA 153 (329)
T ss_pred H-HHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCE--EEeCCHHHHHHHHHhcCCCCceEEEecc
Confidence 2 134556778899998876 78999999999999999999999999999 7899999999999998887 999999
Q ss_pred CCCCCccEEEeC-CHHHHHHHHH---------HHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecc
Q 009323 230 AGGGGRGMRLAK-EPDEFVKLLQ---------QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299 (537)
Q Consensus 230 ~g~gg~Gv~~v~-~~~el~~~~~---------~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~ 299 (537)
.|.||.|.++++ +.+++...++ .+...-..+-.-.+++|++|++| .||||+++.+. |+++....|...
T Consensus 154 ~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~ 231 (329)
T PF15632_consen 154 VGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL 231 (329)
T ss_pred cCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec
Confidence 999999999998 5666665543 11111111112368999999999 99999999985 899877666433
Q ss_pred cccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHH
Q 009323 300 IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIE 379 (537)
Q Consensus 300 ~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~ 379 (537)
...+.+ +..+++.+.+.++++.+|+.|.++++|++|.+|++++||||||++|+-..+.. +|+|+..
T Consensus 232 --G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~s~~-aGvNlp~ 297 (329)
T PF15632_consen 232 --GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGYSCA-AGVNLPY 297 (329)
T ss_pred --CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhhHhh-cCCChHH
Confidence 111111 12357889999999999999999999999988999999999999999777764 7999999
Q ss_pred HHHHHHcCCCCCCC
Q 009323 380 EQIHVAMGGKLRYK 393 (537)
Q Consensus 380 ~~i~~a~G~~l~~~ 393 (537)
+.+..++|++.+..
T Consensus 298 la~~~~lG~~~~~~ 311 (329)
T PF15632_consen 298 LAVKLALGEPIPPP 311 (329)
T ss_pred HHHHHHcCCCCCCc
Confidence 99999999987543
No 52
>PRK06849 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-32 Score=286.63 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=211.1
Q ss_pred CcEEEEEcCcH-HHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~g~-~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.|+|||+|.+. .++.+++++++.|++|++++++.+..+.+.+++|+++.++ .|..+.....+.|+++++++++|+|+|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p-~p~~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIP-SPRWDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeC-CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 57999999665 7999999999999999999877665556678899998773 233333345789999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh-CCcEEEEe
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKA 228 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i-g~PvvvKp 228 (537)
+.+.....+...+.++ .++.+++|+.+.++.++||..++++++++|||+|++ ..+++.+++.++..+. +||+|+||
T Consensus 83 ~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t--~~v~~~~~l~~~~~~~~~~P~vlKP 159 (389)
T PRK06849 83 TCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKT--YLITDPEAIRNFMFKTPHTPYVLKP 159 (389)
T ss_pred CChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHhhcCCCCcEEEEe
Confidence 8763211112222222 356778999999999999999999999999999999 6789999998887776 99999999
Q ss_pred cCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeE
Q 009323 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~ 308 (537)
..|++|.|+.++.+.+++..... ....++++||||+| .++++.++.. +|+++.................
T Consensus 160 ~~~~~~~~v~~~~~~~~l~~~~~---------~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~~ 228 (389)
T PRK06849 160 IYSRFVRRVDLLPKEAALKELPI---------SKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAHSCYKPEYCAGSGAQI 228 (389)
T ss_pred CcccCCCeEEEecCHHHhccccc---------CCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEEEEeeccccCCCCcee
Confidence 99999999999988554332110 01246999999999 7888877764 5777665432111000000011
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccch
Q 009323 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 309 ~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~ 370 (537)
...+. ..++|.+.+.++++++||.|.+++||+++++|++|+||||||++++..+..
T Consensus 229 ~~~~~------~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 229 AFQPI------NHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred EeEEC------CcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEcC
Confidence 11111 235788999999999999999999999998899999999999998877654
No 53
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=1.4e-31 Score=275.59 Aligned_cols=295 Identities=21% Similarity=0.215 Sum_probs=212.8
Q ss_pred CcEEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChh-hh----c--cC-EEEEcCCCCCCCCCCCHH
Q 009323 71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALH-VK----L--AD-ESVCIGEAPSSQSYLLIP 133 (537)
Q Consensus 71 ~~kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~-~~----~--ad-~~~~i~~~~~~~~~~~~~ 133 (537)
.+||.|+-+|.+ |..+++++.+.||+++.++-+.+-.... .. . .+ ..+.+.+ . . +..
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~ 76 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSP--D-R---KVH 76 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeecc--c-c---ccc
Confidence 467887777654 7889999999999999887544310000 00 0 00 0011110 0 0 000
Q ss_pred HHHHH----HHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCC
Q 009323 134 NVLSA----AISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ 208 (537)
Q Consensus 134 ~i~~~----a~~~~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~ 208 (537)
.+... .+..++|.|+|. +|...|+..+..+++.+|++++|+++.+...+.||..+|++|+++|||+|++ ..+.
T Consensus 77 ~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~--~~~~ 154 (343)
T PRK14568 77 GLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAF--WTVT 154 (343)
T ss_pred cccccCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCE--EEEE
Confidence 00000 122469999999 7878899999999999999999999999999999999999999999999998 4455
Q ss_pred CHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCC
Q 009323 209 STEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG 288 (537)
Q Consensus 209 s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g 288 (537)
+.++.. .+.++||+||||..+++|+|+.+|++.+||.++++.+.+. +..++||+||+| +|+++.++.++.+
T Consensus 155 ~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~sv~vl~~~~~ 225 (343)
T PRK14568 155 ADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-SEVGCAVLGNGAD 225 (343)
T ss_pred CCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-EEEEEEEEcCCCC
Confidence 444332 3578999999999999999999999999999999877543 368999999999 9999999976432
Q ss_pred cEEE-Eeeee--cccccccce---------eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEE
Q 009323 289 NVVH-FGERD--CSIQRRNQK---------LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFM 356 (537)
Q Consensus 289 ~v~~-~~~r~--~~~~~~~~~---------~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~l 356 (537)
..+. +.... ..+.+.+.+ .....|+. ++++..+++.+++.+++++||+.|++++||+++++|++||+
T Consensus 226 ~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~ll 304 (343)
T PRK14568 226 LVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLN 304 (343)
T ss_pred cceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEEEE
Confidence 2211 11110 011111111 12345765 89999999999999999999999999999999988999999
Q ss_pred EEecCCCCcc----ccchhhcCCCHHHHHHH
Q 009323 357 EMNTRIQVEH----PVTEMISSVDLIEEQIH 383 (537)
Q Consensus 357 EiNpR~~g~~----~~~~~~~Gidl~~~~i~ 383 (537)
|||++++.+. +......|+++.+..-+
T Consensus 305 EINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 305 EVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 9999997652 22234578876555443
No 54
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=2.9e-31 Score=270.85 Aligned_cols=274 Identities=22% Similarity=0.336 Sum_probs=204.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHH-H-HHHcCCCEEEeC-CCcccccHH
Q 009323 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS-A-AISRGCTMLHPG-YGFLAENAV 159 (537)
Q Consensus 83 a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~-~-a~~~~~d~V~p~-~g~~se~~~ 159 (537)
+..++++++++|+++++++.+.+... . +.+....+. . ....++|+|+|. +|...|+..
T Consensus 20 ~~~i~~al~~~g~~v~~i~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~ 80 (315)
T TIGR01205 20 AAAVLKALRDLGYDVYPVDIDKMGSW-----------T--------YKDLPQLILELGALLEGIDVVFPVLHGRYGEDGT 80 (315)
T ss_pred HHHHHHHHhhcCCEEEEEeecCCccc-----------c--------ccchHHHHhhccccCCCCCEEEEecCCCCCCCcH
Confidence 78999999999999999965443211 0 111111111 1 122569999997 455567888
Q ss_pred HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCC-CHHH---H--HHHHHHhCCcEEEEecCCCC
Q 009323 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ-STEE---A--VKLADELGFPVMIKATAGGG 233 (537)
Q Consensus 160 ~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~-s~~~---~--~~~~~~ig~PvvvKp~~g~g 233 (537)
++..++.+|++++|+++.++..+.||..++++|+++|||+|++ ..+. +.++ + ..+.+.++||+||||..|++
T Consensus 81 ~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~ 158 (315)
T TIGR01205 81 IQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDY--IVLTQNRASADELECEQVAEPLGFPVIVKPAREGS 158 (315)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCE--EEEecccccchhhhHHHHHHhcCCCEEEEeCCCCC
Confidence 8999999999999999999999999999999999999999998 4444 4332 2 23446899999999999999
Q ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcE-EEEeeeeccccc---c-c-cee
Q 009323 234 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV-VHFGERDCSIQR---R-N-QKL 307 (537)
Q Consensus 234 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v-~~~~~r~~~~~~---~-~-~~~ 307 (537)
|+|+.++++.+|+.++++.+... +..+++|+||+| +|+++.++.++.+.. +........+.. . . ...
T Consensus 159 s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T TIGR01205 159 SVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG-RELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGST 231 (315)
T ss_pred ccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC-EEEEEEEECCCCccceEEecCCCCCeeCcccccCCCCe
Confidence 99999999999999999876532 368999999999 999999998543222 221111100100 0 0 112
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCcc----ccchhhcCCCHHHHHHH
Q 009323 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIH 383 (537)
Q Consensus 308 ~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~----~~~~~~~Gidl~~~~i~ 383 (537)
....|+. ++++..++|.+.+.+++++||+.|++++||+++++|++||+|||||++... +......|+|+.++...
T Consensus 232 ~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ 310 (315)
T TIGR01205 232 EYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVER 310 (315)
T ss_pred eEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHH
Confidence 2235664 899999999999999999999999999999999888899999999986542 22334579988887766
Q ss_pred HH
Q 009323 384 VA 385 (537)
Q Consensus 384 ~a 385 (537)
+.
T Consensus 311 ii 312 (315)
T TIGR01205 311 IL 312 (315)
T ss_pred HH
Confidence 54
No 55
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.3e-30 Score=268.83 Aligned_cols=302 Identities=19% Similarity=0.226 Sum_probs=213.9
Q ss_pred cEEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCC----CHHHH--H
Q 009323 72 EKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYL----LIPNV--L 136 (537)
Q Consensus 72 ~kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~----~~~~i--~ 136 (537)
.||.|+-+|.+ |..+++++++.||+++.++.+.+.........+..+..+.......+. ....+ .
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP 81 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccccccccccccccccccc
Confidence 47777776664 788999999999999988755432111000011111000000000000 00000 0
Q ss_pred HHHHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCC------C
Q 009323 137 SAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ------S 209 (537)
Q Consensus 137 ~~a~~~~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~------s 209 (537)
.......+|.++++ +|...|+..+...++.+|++++|++..+...+.||..+|++|+++|||+|+++ .+. +
T Consensus 82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~--~~~~~~~~~~ 159 (347)
T PRK14572 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFF--ELEKLKYLNS 159 (347)
T ss_pred ccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEEccccccC
Confidence 11123468999988 67777999999999999999999999999999999999999999999999983 332 3
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCC-C
Q 009323 210 TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY-G 288 (537)
Q Consensus 210 ~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~-g 288 (537)
.+++.+..++++||+||||..|++|.||.+|++.+||..+++.+... +..++||+||+| +|+++.++.+.. |
T Consensus 160 ~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~~~~g 232 (347)
T PRK14572 160 PRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLERYRGG 232 (347)
T ss_pred hHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeCccCC
Confidence 44544556789999999999999999999999999999999887542 468999999999 999999997422 2
Q ss_pred --cEEEEeeeeccc----cc---cc--ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEE
Q 009323 289 --NVVHFGERDCSI----QR---RN--QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFME 357 (537)
Q Consensus 289 --~v~~~~~r~~~~----~~---~~--~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lE 357 (537)
.++.+...+... .. .+ .......|+. +++++.+++.+.+.+++++||+.|+.++||++++ |++||+|
T Consensus 233 ~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~~~~vlE 310 (347)
T PRK14572 233 KRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVD-GEPHILE 310 (347)
T ss_pred CCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEEC-CcEEEEe
Confidence 233333222111 00 01 1223346775 8999999999999999999999999999999984 6699999
Q ss_pred EecCCCCc----cccchhhcCCCHHHHHHHH
Q 009323 358 MNTRIQVE----HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 358 iNpR~~g~----~~~~~~~~Gidl~~~~i~~ 384 (537)
||++++.+ .+......|+++.++.-++
T Consensus 311 iNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 311 TNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred eeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 99999654 2333346788877765544
No 56
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.3e-30 Score=268.98 Aligned_cols=306 Identities=16% Similarity=0.189 Sum_probs=216.2
Q ss_pred CCcEEEEEcCcHH---------HHHHHHHH-HHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCC------HH
Q 009323 70 RQEKILVANRGEI---------AVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL------IP 133 (537)
Q Consensus 70 ~~~kvLi~g~g~~---------a~~ii~aa-~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~------~~ 133 (537)
|.+||.|+-+|.+ |..+++++ .+.+|+++.++-+.+... +. ..+...........+.... ..
T Consensus 1 ~~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T PRK14570 1 MKKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGI-WY-LLDSVPDPPKLIKRDVLPIVSLIPGCG 78 (364)
T ss_pred CCcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCe-EE-ecCcccccccccccccccccccccccc
Confidence 3568888877764 78899998 578999988865443110 00 0000000000000000000 00
Q ss_pred HHHHHHHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCc----cCC
Q 009323 134 NVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG----LLQ 208 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~----~~~ 208 (537)
.+.. .+..++|.|+|. +|...|+..+..+++.+|+|++|++..+..++.||..+|++|+++|||+|++... ...
T Consensus 79 ~~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~ 157 (364)
T PRK14570 79 IFVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFL 157 (364)
T ss_pred cccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccccc
Confidence 0110 122359999998 6777799999999999999999999999999999999999999999999997311 012
Q ss_pred CHHHHHH-HHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCC
Q 009323 209 STEEAVK-LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (537)
Q Consensus 209 s~~~~~~-~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~ 287 (537)
+.+++.+ +.+.+|||+||||..+++|.|+.++++.+|+.++++.+... +..++||+||+| +|+++.++++..
T Consensus 158 ~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G-rEi~v~Vlg~~~ 230 (364)
T PRK14570 158 DKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA-REIECSVIGNEQ 230 (364)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-EEEEEEEECCCC
Confidence 3455544 34679999999999999999999999999999999987643 367999999999 999999997654
Q ss_pred CcEEEEeeeec---ccccc--------cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEE
Q 009323 288 GNVVHFGERDC---SIQRR--------NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYF 355 (537)
Q Consensus 288 g~v~~~~~r~~---~~~~~--------~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~-~g~~~~ 355 (537)
..+...++... .+... .......+|+. +++++.+++.++|.++.++||++|++++||++++ +|++||
T Consensus 231 ~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yv 309 (364)
T PRK14570 231 IKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYL 309 (364)
T ss_pred ceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEE
Confidence 34444443221 01110 11123456776 9999999999999999999999999999999995 588999
Q ss_pred EEEecCCCCc----cccchhhcCCCHHHH---HHHHHc
Q 009323 356 MEMNTRIQVE----HPVTEMISSVDLIEE---QIHVAM 386 (537)
Q Consensus 356 lEiNpR~~g~----~~~~~~~~Gidl~~~---~i~~a~ 386 (537)
+|||++++-. .+..-...|+++.+. +++.++
T Consensus 310 lEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~ 347 (364)
T PRK14570 310 NEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAF 347 (364)
T ss_pred EEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999754 223334578875554 444444
No 57
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=5.9e-29 Score=251.75 Aligned_cols=270 Identities=20% Similarity=0.301 Sum_probs=200.5
Q ss_pred EEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009323 73 KILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 73 kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 143 (537)
||.|+-+|.+ +..++++++++|++++.++.+.+ . + .. +.+..+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~--~-----------~------------~~---~~~~~~ 53 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDED--F-----------L------------KK---VDQLKS 53 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCch--H-----------H------------HH---hhhccC
Confidence 5666655553 78899999999999999853321 0 0 01 111245
Q ss_pred CCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCC
Q 009323 144 CTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF 222 (537)
Q Consensus 144 ~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~ 222 (537)
+|+|++. .|...|+..+..+++.+|++++|+++.++..+.||..++++++ .|||+|++ ..+.+.. ..+.++|
T Consensus 54 ~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~--~~~~~~~----~~~~l~~ 126 (299)
T PRK14571 54 FDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDF--VEIKEFM----KTSPLGY 126 (299)
T ss_pred CCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCE--EEEechh----hhhhcCC
Confidence 8999988 4555578888999999999999999999999999999999998 58999998 4454332 2356899
Q ss_pred cEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCc-EEEEeeeecc--
Q 009323 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN-VVHFGERDCS-- 299 (537)
Q Consensus 223 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~-v~~~~~r~~~-- 299 (537)
|+||||..|+||+||.+|++.+|+.++++.+... ...++||+||+| +|+++.++.++.+. ++.+.+....
T Consensus 127 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E~sv~vl~~~~~~~vl~~~e~~~~~~ 199 (299)
T PRK14571 127 PCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIPG-REMTVSILETEKGFEVLPILELRPKRR 199 (299)
T ss_pred CEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEccccc-eEEEEEEEcCCCCeeeeceEEEecCCC
Confidence 9999999999999999999999999998775432 357999999999 99999999874432 2322221100
Q ss_pred ---cccc--cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCcc----ccch
Q 009323 300 ---IQRR--NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTE 370 (537)
Q Consensus 300 ---~~~~--~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~----~~~~ 370 (537)
+... ........|+. ++++..+++.+.+.++++++|+.|++++||++++ |++||+|||++++-.. +..-
T Consensus 200 ~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~-~~~~viEiN~~Pg~~~~s~~~~~~ 277 (299)
T PRK14571 200 FYDYVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFSD-GRFYFLEINTVPGLTELSDLPASA 277 (299)
T ss_pred ccccccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEC-CcEEEEEeeCCCCCCccCHHHHHH
Confidence 0000 00112234665 8999999999999999999999999999999985 6699999999997542 2222
Q ss_pred hhcCCCHHH---HHHHHHc
Q 009323 371 MISSVDLIE---EQIHVAM 386 (537)
Q Consensus 371 ~~~Gidl~~---~~i~~a~ 386 (537)
...|+++.+ .+++.++
T Consensus 278 ~~~G~~~~~li~~ii~~a~ 296 (299)
T PRK14571 278 KAGGIEFEELVDIIIKSAF 296 (299)
T ss_pred HHcCCCHHHHHHHHHHHHH
Confidence 357888776 4444443
No 58
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.97 E-value=3.2e-28 Score=276.91 Aligned_cols=298 Identities=17% Similarity=0.168 Sum_probs=215.3
Q ss_pred CcEEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009323 71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~ 141 (537)
.+||.|+-+|.+ |..+++++++.||+|+.++-+.+.. +..................+. ..+.. ..
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~--~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~ 524 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGL--WETVSSLETAIEEDSGKSVLS--SEIAQ--AL 524 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCe--EEecccccccccccccccccc--hhhhh--cc
Confidence 457877776664 7889999999999999886544311 111100000000000000110 11111 11
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCC------HH-HH
Q 009323 142 RGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS------TE-EA 213 (537)
Q Consensus 142 ~~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s------~~-~~ 213 (537)
.++|.|+|. +|...|+..+..+++.+|++++|++..+...+.||..+|++++++|||+|++ ..+.. .+ .+
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~--~~~~~~~~~~~~~~~~ 602 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPY--QPLTLAGWKREPELCL 602 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCE--EEEechhcccChHHHH
Confidence 469999998 6777799999999999999999999999999999999999999999999998 34432 22 23
Q ss_pred HHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEE
Q 009323 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 214 ~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~ 293 (537)
.++.++++||+||||..+++|.|+.+|++.+|+.++++.+... +.+++||+||.+++|++|.++.++.+..+..
T Consensus 603 ~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~ 676 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVIA 676 (809)
T ss_pred HHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEec
Confidence 4567789999999999999999999999999999999987543 4789999998877999999999866533221
Q ss_pred --eeeecc--cccccce--------eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecC
Q 009323 294 --GERDCS--IQRRNQK--------LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 361 (537)
Q Consensus 294 --~~r~~~--~~~~~~~--------~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR 361 (537)
.++.+. +.....| .....|+. +++++.+++.+++.++.++||+.|++++||+++++|++||+|||||
T Consensus 677 ~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 677 GPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPI 755 (809)
T ss_pred cceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCC
Confidence 222111 1111111 11224664 9999999999999999999999999999999998899999999999
Q ss_pred CCCcc----ccchhhcCCCHHHHHHH
Q 009323 362 IQVEH----PVTEMISSVDLIEEQIH 383 (537)
Q Consensus 362 ~~g~~----~~~~~~~Gidl~~~~i~ 383 (537)
++-.. +......|+++.+..-+
T Consensus 756 PG~t~~s~~p~~~~~~G~~~~~li~~ 781 (809)
T PRK14573 756 PGMTEASPFLTAFVRKGWTYEQIVHQ 781 (809)
T ss_pred CCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 97652 33334578876555443
No 59
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.96 E-value=1.9e-30 Score=218.00 Aligned_cols=107 Identities=51% Similarity=0.901 Sum_probs=102.6
Q ss_pred EEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 405 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 405 ~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
+||||||||.++|.|++|+|+.+.+|.++++|+|++++.|+.|+++||||+||||++|.||++|+++|.+||+++.|.|+
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~Gv 80 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEGV 80 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEESS
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCcccccccc
Q 009323 485 PTTIEYHKLILDVEDFKNGKVDTAFIP 511 (537)
Q Consensus 485 ~tn~~~~~~~~~~~~f~~~~~~t~~~~ 511 (537)
+||++||+.||.||+|++|+++|+|||
T Consensus 81 ~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 81 KTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred cCCHHHHHHHhCCcccccCCCeeeccC
Confidence 999999999999999999999999986
No 60
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=229.85 Aligned_cols=349 Identities=20% Similarity=0.212 Sum_probs=242.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCC--CCCHHHHHHHHHHcC--CCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQS--YLLIPNVLSAAISRG--CTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~--~~~~~~i~~~a~~~~--~d~ 146 (537)
+-|||++| ...+.+..+|.++|++|..+....+.+.. ..++.+++..+...-.. ..|.+.|++++.+.. +|+
T Consensus 11 ~~kiLviG--vntR~vveSA~klGf~V~sv~~y~~~Dl~--~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~ 86 (389)
T COG2232 11 SCKILVIG--VNTRPVVESASKLGFEVYSVQYYDPADLP--GDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDA 86 (389)
T ss_pred cceEEEEe--ecchHhHHHHHhcCeEEEEeEeecccccc--cccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcce
Confidence 35799995 45678899999999999988654443333 55666666543322222 457788888887644 778
Q ss_pred -EEeCCCcccccHHHHHHHHHCCCceeCCCHH-HHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcE
Q 009323 147 -LHPGYGFLAENAVFVEMCREHGINFIGPNPD-SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (537)
Q Consensus 147 -V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~-~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~Pv 224 (537)
++|+.||...+ .--..+..+.|++++ ......||..+.+.+..+|+|.|+.+ .. + ....--+++
T Consensus 87 ~ii~~sg~e~l~-----~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--~~---e----~~~~gekt~ 152 (389)
T COG2232 87 PIIPFSGFEALR-----TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--KI---E----PLEEGEKTL 152 (389)
T ss_pred eeeecccccccc-----ccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--hh---h----hhhhcceee
Confidence 77877763332 112455677888888 99999999999999999999999862 22 1 122234789
Q ss_pred EEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccc---
Q 009323 225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ--- 301 (537)
Q Consensus 225 vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~--- 301 (537)
|+||+.|+||. +.++.-.++.. ...+++|+||+| +++|+.++.++. .++.+...+.-+.
T Consensus 153 IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~-~a~~la~N~QiI~~~~ 214 (389)
T COG2232 153 ILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGS-DALTLAVNDQIIDGLR 214 (389)
T ss_pred EEeeccCCCce-eeecccccccC---------------CcceehhhhcCC-ceeEEEEEecCc-ceEEEEEeeeeecccc
Confidence 99999999996 22322212111 268999999999 999999999976 5555543332111
Q ss_pred -cc--cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHH
Q 009323 302 -RR--NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLI 378 (537)
Q Consensus 302 -~~--~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~ 378 (537)
.+ +.+.+.-+|.+ ..+ .+++++.+..++..||+.|.-.|||++++.| +|+||||||+||+...+|+++|+|++
T Consensus 215 ~~~~~f~Y~GNlTP~~--~~~-~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~ 290 (389)
T COG2232 215 GEYSQFVYKGNLTPFP--YEE-VEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLF 290 (389)
T ss_pred cccccceeccCcCCCc--chh-hHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHH
Confidence 11 11222334544 222 2789999999999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEE
Q 009323 379 EEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKL 458 (537)
Q Consensus 379 ~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~v 458 (537)
++++++..|+-+ +.+.++++++...+|+. ...+.+ .+ ...+++ | --.+|..+.. +-.+..|
T Consensus 291 ~lHi~af~G~Lp----Er~kpr~~a~krILyap--~~v~v~------~l---~~~~~~-D-iP~~Gtviek--gePl~sv 351 (389)
T COG2232 291 RLHIQAFDGELP----ERPKPRGYACKRILYAP--RTVRVP------IL---KLSWTH-D-IPRPGTVIEK--GEPLCSV 351 (389)
T ss_pred HHHHHHhcCcCc----CCCCcceeEEeEEEecc--ceeecc------cc---cccccc-c-CCCCCcccCC--CCceeee
Confidence 999999999743 44567888888877762 222211 00 001111 1 1123444433 2238899
Q ss_pred EEEcCCHHHHHHHHHHhhhc
Q 009323 459 IVWAPTREKAIERMKRALND 478 (537)
Q Consensus 459 i~~g~~~~ea~~~~~~al~~ 478 (537)
|+.+.++++|...+.+.++.
T Consensus 352 iA~~nt~~~a~~~~er~~er 371 (389)
T COG2232 352 IASSNTRSGAESMAERLAER 371 (389)
T ss_pred eeccCCHHHHHHHHHHHHHH
Confidence 99999999999877777654
No 61
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.96 E-value=4.8e-29 Score=264.61 Aligned_cols=383 Identities=18% Similarity=0.266 Sum_probs=309.3
Q ss_pred CCCcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHH
Q 009323 69 CRQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS 137 (537)
Q Consensus 69 ~~~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~ 137 (537)
.+-+||||+|+|.. +.+.|+++|+.|+.++++.++.........+||..+.++ ...+.+-.
T Consensus 375 ~~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp--------vT~~~vt~ 446 (1435)
T KOG0370|consen 375 VEVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP--------VTPEYVTK 446 (1435)
T ss_pred ccccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee--------cCHHHHHH
Confidence 34689999998775 678999999999999999776666666778999999883 45667777
Q ss_pred HHHHcCCCEEEeCCCccccc---HHHHH--HHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHH
Q 009323 138 AAISRGCTMLHPGYGFLAEN---AVFVE--MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE 212 (537)
Q Consensus 138 ~a~~~~~d~V~p~~g~~se~---~~~a~--~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~ 212 (537)
..+...+|+|+.++|.-... .+..+ .++..+.+.+|.+.+++....|+..+.+.+.+.+.++.++ ..+++.++
T Consensus 447 vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s--~a~~sie~ 524 (1435)
T KOG0370|consen 447 VIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPS--EAVSTIEE 524 (1435)
T ss_pred HHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccch--hhHhHHHH
Confidence 88888999999887632111 12222 5677888999999999999999999999999999999998 78999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEE
Q 009323 213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (537)
Q Consensus 213 ~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~ 292 (537)
+.++++++|||+|+.....-||.|--.+++.+||.+...++... ..+++||+-+.|++|++++|++|..++.+.
T Consensus 525 al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciT 598 (1435)
T KOG0370|consen 525 ALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCIT 598 (1435)
T ss_pred HHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------CceeeehhhhccccceEEEEEeccccchhh
Confidence 99999999999999999999999999999999999988877655 379999999999999999999999888876
Q ss_pred Eeeeec--ccccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEecCCCCccccc
Q 009323 293 FGERDC--SIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVT 369 (537)
Q Consensus 293 ~~~r~~--~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~-~g~~~~lEiNpR~~g~~~~~ 369 (537)
...-+. ....+....+..+|+..++++..+.++..+.++++++|..|-+++++.+++ .-++++||+|+|++.+..+.
T Consensus 599 vcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssaLA 678 (1435)
T KOG0370|consen 599 VCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSALA 678 (1435)
T ss_pred hcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhhhh
Confidence 643221 223344456667899999999999999999999999999999999999994 45699999999999999999
Q ss_pred hhhcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCC
Q 009323 370 EMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPP 449 (537)
Q Consensus 370 ~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~ 449 (537)
..+||+.|......+++|.+++.....+..... ..|.|+-+.+... .|-|.+....+...++..
T Consensus 679 SkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~------------AcFEpslDY~v~K----iprWDl~kf~~vs~~igs 742 (1435)
T KOG0370|consen 679 SKATGYPLAYTAAKLALGIPLPELKNSVTKTTT------------ACFEPSLDYCVVK----IPRWDLSKFQRVSTEIGS 742 (1435)
T ss_pred ccCccCcHHHHHHHHhcCcccccCCccccccee------------cccCcchhheeee----cccccHHHHHHHHHhhch
Confidence 999999999999999999998765432222211 2578875554332 233333333344455555
Q ss_pred CCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeeec
Q 009323 450 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (537)
Q Consensus 450 ~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~~ 485 (537)
.+.| .|.|++.|+++|||++|+.|..+. .+.|+.
T Consensus 743 smKS-vgEvm~iGR~feea~QKalr~vd~-~~~Gf~ 776 (1435)
T KOG0370|consen 743 SMKS-VGEVMAIGRTFEEAFQKALRMVDP-SLLGFM 776 (1435)
T ss_pred hhhh-hhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc
Confidence 5666 899999999999999999998875 445543
No 62
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.96 E-value=5.6e-29 Score=209.53 Aligned_cols=107 Identities=55% Similarity=0.913 Sum_probs=104.9
Q ss_pred EEEEeeCCCCCCCCCCCCceeEEEcCCCCeEEEeeeccCCCccCCCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 405 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 405 ~~ri~ae~~~~~f~p~~G~i~~~~~~~~~~vr~~~~~~~G~~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
+||||||||.++|.|++|+|+.+..|.++++|+|++++.|+.|+++||||+||||++|+||++|+++|.+||+++.|+|+
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~Gv 80 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEGV 80 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEECc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCcccccccc
Q 009323 485 PTTIEYHKLILDVEDFKNGKVDTAFIP 511 (537)
Q Consensus 485 ~tn~~~~~~~~~~~~f~~~~~~t~~~~ 511 (537)
+||++||+.|+.|++|++|+++|+||+
T Consensus 81 ~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 81 KTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred cCCHHHHHHHhcCHhhhcCcccccccC
Confidence 999999999999999999999999985
No 63
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.95 E-value=4.3e-25 Score=225.64 Aligned_cols=396 Identities=20% Similarity=0.235 Sum_probs=274.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCC--CEEEEecCCCCCC-hhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~--~vv~v~~~~d~~~-~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
..+|||+|+|..-..++..+++.-. ++++...+....+ ....+.+ +.| +..|.+++.++|+++++..|
T Consensus 2 ~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~--~dI-------~~~d~~ala~f~~e~~I~lV 72 (788)
T KOG0237|consen 2 RVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPN--LDI-------SVADFEALASFCKEHNINLV 72 (788)
T ss_pred ceEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCcccCccccCcc--ccc-------ChhhHHHHHHHHHHcceeEE
Confidence 4689999999988889999988643 2333321211111 0011111 111 24689999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCC-cEEE
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMI 226 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~-Pvvv 226 (537)
++|.+.- -...++..+.+.||+++||+.++.++-.+|..+|++|.++|||+..| ..+++.+++..|.+..+| ++||
T Consensus 73 vvGPE~P-L~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y--~~ft~~e~a~sfi~~~~~~~~Vi 149 (788)
T KOG0237|consen 73 VVGPELP-LVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKY--KTFTDPEEAKSFIQSATDKALVI 149 (788)
T ss_pred EECCchh-hhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCccee--eeeCCHHHHHHHHHhCCCcceEE
Confidence 9987321 11356678889999999999999999999999999999999999998 789999999999999995 6999
Q ss_pred EecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeee-ec-----
Q 009323 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DC----- 298 (537)
Q Consensus 227 Kp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r-~~----- 298 (537)
|+..-+.|+||.+..+.+|.-++++.+..... |+ ...++|||+++| .|+++..+.|++ .+..+... |.
T Consensus 150 KAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~--fg~AG~tvViEE~LEG-eEvS~laftDG~-s~~~mp~aQDHKRl~d 225 (788)
T KOG0237|consen 150 KADGLAAGKGVIVAKSKEEAFEAVDSILVKKV--FGSAGKTVVIEELLEG-EEVSFLAFTDGY-SVRPLPPAQDHKRLGD 225 (788)
T ss_pred eecccccCCceEeeccHHHHHHHHHHHHhhhh--hccccceEehhhhcCc-ceEEEEEEecCc-ccccCCcccchhhhcC
Confidence 99999999999999999999999998875432 33 469999999999 999999999987 44444221 10
Q ss_pred -ccccccceeEEEcCCCCCCHHHHHHHHHH----HHHHHHHc--CCcceeEEEEEEeCCCCEEEEEEecCCCCc-cccch
Q 009323 299 -SIQRRNQKLLEEAPSPALTPELRKAMGDA----AVAAAASI--GYIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTE 370 (537)
Q Consensus 299 -~~~~~~~~~~~~~p~~~l~~~~~~~i~~~----a~~i~~al--g~~G~~~vEf~~~~~g~~~~lEiNpR~~g~-~~~~~ 370 (537)
....+......++|+|..++++.+.+.+. +.+-+..= .|.|+...-++++++| +.+||.|.|++-- ..+..
T Consensus 226 gD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~-P~vLEfN~RFGDPEtQv~l 304 (788)
T KOG0237|consen 226 GDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG-PKVLEFNVRFGDPETQVLL 304 (788)
T ss_pred CCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC-ccEEEEecccCCchhhhhH
Confidence 01122223445789998888776654443 33333333 4569999999999998 9999999999542 33333
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCCCccccceeEEEEEEeeCCCC-CCCCCCCCc-eeEEEcCCCCeEEEe---eeccCCC
Q 009323 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPF-KNFRPGPGR-ITAYLPAGGPFVRMD---SHVYPDY 445 (537)
Q Consensus 371 ~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~-~~f~p~~G~-i~~~~~~~~~~vr~~---~~~~~G~ 445 (537)
...--||++.++..+-|. |.-. ++....++....+.|.... ..+ ..|. |+.+..+..++.++. +.++.+.
T Consensus 305 ~lLesDL~evi~a~~~~~-L~~~--~i~w~~~sa~~VV~as~gYP~sy--~KG~~It~~~~~~~~~~rVFHAGTs~~ss~ 379 (788)
T KOG0237|consen 305 PLLESDLAEVILACCNGR-LDTV--DIVWSKKSAVTVVMASGGYPGSY--TKGSIITGLPEADRPGTRVFHAGTSLDSSN 379 (788)
T ss_pred HHHHhHHHHHHHHHhhCC-cccc--CccccccceEEEEEecCCCCCCC--cCCcccccCcccCCCcceEEeccccccccc
Confidence 344559999888777765 3211 2222223333344443211 111 1233 344433444566652 3444453
Q ss_pred ccCCCCCcccEEEEEEcCCHHHHHHHHHHhhhcceEeee--ccCHHH
Q 009323 446 VVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV--PTTIEY 490 (537)
Q Consensus 446 ~v~~~~ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~--~tn~~~ 490 (537)
.+.. ..++-.|.+.++|.++|.++++++.+.+.+.|. .|+|.|
T Consensus 380 vvTN--GGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~ 424 (788)
T KOG0237|consen 380 VVTN--GGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAW 424 (788)
T ss_pred eEec--CceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhh
Confidence 3332 445667889999999999999999999999984 344443
No 64
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.95 E-value=9.8e-26 Score=228.24 Aligned_cols=276 Identities=18% Similarity=0.179 Sum_probs=198.0
Q ss_pred EEEEEcCc---HHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 73 KILVANRG---EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 73 kvLi~g~g---~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|++|+.+. ..+.+++++++++|+++..++........... .+..+. .. ....++|+|++
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~-~~~~~~----------~~-------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA-ASSIHY----------KG-------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCC-cccEEE----------CC-------cccCCCCEEEE
Confidence 57777743 45789999999999999999532110000000 111111 00 01136899998
Q ss_pred CCCcc-ccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh-CCcEEE
Q 009323 150 GYGFL-AEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMI 226 (537)
Q Consensus 150 ~~g~~-se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i-g~Pvvv 226 (537)
..+.. ... ...+..++..| +++++++.++..+.||..++++|+++|||+|++ ..+.+.+++.++++++ +||+||
T Consensus 64 ~~~~~~~~~~~~~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t--~~~~~~~~~~~~~~~~~~~P~Vv 140 (300)
T PRK10446 64 RIGTAITFYGTAALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVT--GIAHSPDDTSDLIDMVGGAPLVV 140 (300)
T ss_pred cCCCchhhHHHHHHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHHhCCCCEEE
Confidence 64321 111 23466788999 456789999999999999999999999999998 5677888888888877 799999
Q ss_pred EecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccC---CCcEEEEEEEEeCCCcEEEEeeeeccc--c
Q 009323 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ---NPRHIEFQVLADKYGNVVHFGERDCSI--Q 301 (537)
Q Consensus 227 Kp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~---g~~e~~v~v~~d~~g~v~~~~~r~~~~--~ 301 (537)
||..|++|+||+++++.+++..+++.+... +..+++|+||+ | +++.+.++. ++++....+...- .
T Consensus 141 KP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g-~d~rv~vig---~~~~~~~~r~~~~~~~ 210 (300)
T PRK10446 141 KLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQG-CDIRCLVVG---DEVVAAIERRAKEGDF 210 (300)
T ss_pred EECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCC-ceEEEEEEC---CEEEEEEEEecCCCch
Confidence 999999999999999999998888765432 36799999994 5 899998874 3566555543211 1
Q ss_pred cccceeE-EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHH
Q 009323 302 RRNQKLL-EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEE 380 (537)
Q Consensus 302 ~~~~~~~-~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~ 380 (537)
+.+.... ...+.. ++ +++.+.|.++++++|+. .+++||+++++| +||+|||++++ ....+.++|+|+.+.
T Consensus 211 ~~n~~~g~~~~~~~-l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg--~~~~~~~~g~~~~~~ 281 (300)
T PRK10446 211 RSNLHRGGAASVAS-IT----PQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPG--LEGIEKTTGIDIAGK 281 (300)
T ss_pred hheeccCCeeccCC-CC----HHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCC--hhhhHHHHCcCHHHH
Confidence 1111111 111222 43 45779999999999996 899999999888 99999999984 345677899999999
Q ss_pred HHHHHcCC
Q 009323 381 QIHVAMGG 388 (537)
Q Consensus 381 ~i~~a~G~ 388 (537)
+++.....
T Consensus 282 ~~~~i~~~ 289 (300)
T PRK10446 282 MIRWIERH 289 (300)
T ss_pred HHHHHHHh
Confidence 99877543
No 65
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.95 E-value=3.4e-26 Score=243.10 Aligned_cols=306 Identities=18% Similarity=0.252 Sum_probs=260.8
Q ss_pred CcEEEEEcCcHH-----------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~-----------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
.+-++|+|+|.. ++..+|++|++|++++.|..++..-+.....||..+.- ....+.++++-
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFe--------eis~E~vmDiY 989 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFE--------EISYERVMDIY 989 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhHh--------hhhhhhhhhhh
Confidence 346899998874 78999999999999999999999888888999987742 46678899998
Q ss_pred HHcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHH
Q 009323 140 ISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 140 ~~~~~d~V~p~~-g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~ 218 (537)
...+..+|+-.. |.+..| .+-.+.+.|++++|.+|+.+....|+..+.++|.+.||..|+| ...++.+++.+|++
T Consensus 990 e~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~W--kelt~~~eA~~F~~ 1065 (1435)
T KOG0370|consen 990 ELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAW--KELTSLEEAKKFAE 1065 (1435)
T ss_pred hhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhh--hhhccHHHHHHHHH
Confidence 888888777664 444333 4556778899999999999999999999999999999999998 78999999999999
Q ss_pred HhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeec
Q 009323 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298 (537)
Q Consensus 219 ~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~ 298 (537)
+.||||+|.|+.--+|.-|-++++.+||+..++++..-+ .++++++.+||+|++|++++.+.. +|+++.....+.
T Consensus 1066 ~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~-~G~~~~haiSEH 1140 (1435)
T KOG0370|consen 1066 KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAISEH 1140 (1435)
T ss_pred hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhHHhhcccceechhhhcc-CCeEEEEehhhh
Confidence 999999999999999999999999999999999887654 368999999999999999998864 667765543322
Q ss_pred c--cccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCC
Q 009323 299 S--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 376 (537)
Q Consensus 299 ~--~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gid 376 (537)
. -.-+.....-..|+..+++...+++.+++.++++++.+.|+++++|+..++ ++.+||+|-|.+.+.|+..++.|+|
T Consensus 1141 vEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~n-~lkVIECN~RaSRSFPFvSKtlgvd 1219 (1435)
T KOG0370|consen 1141 VENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKDN-ELKVIECNVRASRSFPFVSKTLGVD 1219 (1435)
T ss_pred hhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecCC-eEEEEEeeeeeeccccceehhcCch
Confidence 1 111222233346777899999999999999999999999999999998765 5999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCC
Q 009323 377 LIEEQIHVAMGGKLRYKQ 394 (537)
Q Consensus 377 l~~~~i~~a~G~~l~~~~ 394 (537)
+++...++.+|.++++..
T Consensus 1220 fi~~At~~i~g~~~~~~~ 1237 (1435)
T KOG0370|consen 1220 FIALATRAIMGVPVPPDL 1237 (1435)
T ss_pred HHHHHHHHHhCCCCCCcc
Confidence 999999999998876544
No 66
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.95 E-value=2.1e-25 Score=227.36 Aligned_cols=267 Identities=18% Similarity=0.267 Sum_probs=192.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCC-CChhhhccCEEEEcCCCCCCCCC---CCHHHHHHHHHHcCCCEEE
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK-DALHVKLADESVCIGEAPSSQSY---LLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~-~~~~~~~ad~~~~i~~~~~~~~~---~~~~~i~~~a~~~~~d~V~ 148 (537)
+|..++ +..++.+++.|++.|++++++....+. ......++|+++.++ +| .+.+...++++. +. .++
T Consensus 20 ~i~~~~-shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~------~~~di~~~~~~~~l~~~-~~-iiI 90 (358)
T PRK13278 20 TIATIG-SHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVD------DFSDILNEAVQEKLREM-NA-ILI 90 (358)
T ss_pred eEEEEe-cccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEc------chhhhcCHHHHHHHhhc-Cc-EEE
Confidence 555554 456789999999999999999866542 234566789998874 34 333334444433 33 255
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEe
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp 228 (537)
|. |..........+. .++++++| +.++++...||..++++|+++|||+|++ +.+.++ ++||+||||
T Consensus 91 p~-gs~v~y~~~d~l~-~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp 156 (358)
T PRK13278 91 PH-GSFVAYLGLENVE-KFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK----YESPED-------IDRPVIVKL 156 (358)
T ss_pred eC-CCcceeecHHHHH-HCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEe
Confidence 54 5444544444443 78888775 8899999999999999999999999986 344443 579999999
Q ss_pred cCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeC-CCcEEEE--eeeecc----cc
Q 009323 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHF--GERDCS----IQ 301 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~-~g~v~~~--~~r~~~----~~ 301 (537)
..|.||+|+++|++.+|+.++++.+.+...-.. ...+++||||.| .|++++++... +|++-.+ ..|..+ ..
T Consensus 157 ~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~ 234 (358)
T PRK13278 157 PGAKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLV 234 (358)
T ss_pred CCCCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeeccccee
Confidence 999999999999999999999988754221111 478999999999 89999999742 3454333 222221 00
Q ss_pred c-----------cc-ceeEEEcCCCCCCHHHHHHHHHHHHHHHHH----c--CCcceeEEEEEEeCCCCEEEEEEecCCC
Q 009323 302 R-----------RN-QKLLEEAPSPALTPELRKAMGDAAVAAAAS----I--GYIGVGTVEFLLDERGSFYFMEMNTRIQ 363 (537)
Q Consensus 302 ~-----------~~-~~~~~~~p~~~l~~~~~~~i~~~a~~i~~a----l--g~~G~~~vEf~~~~~g~~~~lEiNpR~~ 363 (537)
+ .. .-.....|+. +.+.+.+++.+.+.+++++ + |..|++++|+++++++++|++|||+|++
T Consensus 235 r~p~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~ 313 (358)
T PRK13278 235 RIPAKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIV 313 (358)
T ss_pred eccchhhhhcccCCceeEecceecc-chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCccc
Confidence 1 00 0112233554 7888999999999999988 4 5569999999999999999999999996
Q ss_pred Cc
Q 009323 364 VE 365 (537)
Q Consensus 364 g~ 365 (537)
|+
T Consensus 314 gg 315 (358)
T PRK13278 314 AG 315 (358)
T ss_pred CC
Confidence 65
No 67
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.95 E-value=1.9e-25 Score=223.50 Aligned_cols=266 Identities=21% Similarity=0.274 Sum_probs=191.2
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccH
Q 009323 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENA 158 (537)
Q Consensus 79 ~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~~se~~ 158 (537)
.+....+++++++++|+++.+++.+.. .+.+... . .....+|+|++.........
T Consensus 9 ~~~~~~~l~~a~~~~g~~~~~~~~~~~-----------~~~~~~~-----~---------~~~~~~d~v~~r~~~~~~~~ 63 (277)
T TIGR00768 9 IRLDEKMLKEAAEELGIDYKVVTPPAI-----------PLTFNEG-----P---------RELAELDVVIVRIVSMFRGL 63 (277)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEhHHc-----------EEeccCC-----C---------ccCCCCCEEEEechhHhhHH
Confidence 455678899999999999998852211 1111100 0 00134788887642111234
Q ss_pred HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEE
Q 009323 159 VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238 (537)
Q Consensus 159 ~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~ 238 (537)
.+++.++..|+++++ +++++..+.||..++++|+++|+|+|++ ..+.+.+++.++.++++||+|+||..|++|+|+.
T Consensus 64 ~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t--~~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~ 140 (277)
T TIGR00768 64 AVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRT--GLAGSPEEALKLIEEIGFPVVLKPVFGSWGRLVS 140 (277)
T ss_pred HHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCE--EEeCCHHHHHHHHHhcCCCEEEEECcCCCCCceE
Confidence 677888899999874 6899999999999999999999999998 6788999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeee--cccccccceeEEEcCCCCC
Q 009323 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD--CSIQRRNQKLLEEAPSPAL 316 (537)
Q Consensus 239 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~--~~~~~~~~~~~~~~p~~~l 316 (537)
++++.+++..+++....... ....+++|+||++....++.++.. .|+++....+. ..+......-....|.. +
T Consensus 141 ~i~~~~~l~~~~~~~~~~~~---~~~~~lvQe~I~~~~~~~~rv~v~-~~~~~~~~~r~~~~~~~~n~~~g~~~~~~~-l 215 (277)
T TIGR00768 141 LARDKQAAETLLEHFEQLNG---PQNLFYVQEYIKKPGGRDIRVFVV-GDEVIAAIYRITSGHWRTNLARGGKAEPCP-L 215 (277)
T ss_pred EEcCHHHHHHHHHHHHHhcc---cCCcEEEEeeecCCCCceEEEEEE-CCEEEEEEEEcCCCchhhhhhcCCeeeecC-C
Confidence 99999999988776543210 124799999999733244444443 23565544432 11111000011112222 3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHH
Q 009323 317 TPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 317 ~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~ 384 (537)
+ +++.+.+.++++++|+ |.+++||+++++|++||+|||+|++ ....+..+|+|+.+++++.
T Consensus 216 ~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~--~~~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 216 T----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPE--FKNSVKTTGVNIAGKLLDY 276 (277)
T ss_pred C----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcc--hhhhHHHHCCCHHHHHHhh
Confidence 3 4678899999999999 8899999999888899999999985 3445778999999998763
No 68
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.95 E-value=1.8e-26 Score=216.25 Aligned_cols=177 Identities=29% Similarity=0.492 Sum_probs=133.5
Q ss_pred HhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHh
Q 009323 181 IMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (537)
Q Consensus 181 ~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~ 260 (537)
++.||..++++++++|||+|++ ..+.+.+++.++++.++||+||||..|+||+|++++++.+|+.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~--~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKT--RIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----E--EEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 4789999999999999999998 789999999999999999999999999999999999999999999999876641
Q ss_pred cCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccccc--c---ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q 009323 261 FGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRR--N---QKLLEEAPSPALTPELRKAMGDAAVAAAASI 335 (537)
Q Consensus 261 ~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~--~---~~~~~~~p~~~l~~~~~~~i~~~a~~i~~al 335 (537)
..+..+++|+||+| .++++.++.+ +|+++.+...+...... . .......+ .+....+++.+.+.++++++
T Consensus 77 ~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 151 (184)
T PF13535_consen 77 LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVP---SEPPLPEELRDLARKLLRAL 151 (184)
T ss_dssp -HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecc---cccccHHHHHHHHHHHHHHc
Confidence 11368999999999 9999999988 78887665444322211 1 11111222 23334489999999999999
Q ss_pred CC-cceeEEEEEEeCCCCEEEEEEecCCCCcc
Q 009323 336 GY-IGVGTVEFLLDERGSFYFMEMNTRIQVEH 366 (537)
Q Consensus 336 g~-~G~~~vEf~~~~~g~~~~lEiNpR~~g~~ 366 (537)
|+ .|++++||+++++|++||+|||||++|++
T Consensus 152 g~~~G~~~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 152 GYRNGFFHIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp T--SEEEEEEEEEETCCEEEEEEEESS--STT
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECccCCCCC
Confidence 99 69999999999889899999999998864
No 69
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.94 E-value=1.6e-24 Score=217.12 Aligned_cols=294 Identities=16% Similarity=0.164 Sum_probs=214.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhh---hccCEEEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEE
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTML 147 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~---~~ad~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~d~V 147 (537)
+|..+|+ .+|+.|.+-||+.|++|++++.... ..++. .++|+.+.++ +|.++ +.+.+..++.+ +|
T Consensus 19 ~i~t~~S-Hsal~i~~gAk~egf~t~~v~~~~r-~~~Y~~f~~~~d~~i~~~------~f~~~~~~~~~~~l~~~n--~i 88 (366)
T PRK13277 19 KIGVLAS-HSALDVFDGAKDEGFRTIAVCQKGR-ERTYREFKGIVDEVIVLD------KFKDILSEKVQDELREEN--AI 88 (366)
T ss_pred EEEEEec-chHHHHhccHHhcCCcEEEEEcCCC-cchhhhhccccceEEEec------chhhhhhHHHHHHHHHCC--eE
Confidence 5666654 5789999999999999999985443 22333 4689999874 45542 35556555533 44
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHh--cCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEE
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM--GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~--~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~Pvv 225 (537)
+--+|.+.+....-....+..+|++| +...+++- +||..+.++|+++||++|+.+. +. +++.+|||
T Consensus 89 ~iPh~sf~~y~g~~~ie~~~~vp~fG-nr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~----~p-------~eId~PVI 156 (366)
T PRK13277 89 FVPNRSFAVYVGYDAIENEFKVPIFG-NRYLLRWEERTGEKNYYWLLEKAGIPYPKLFK----DP-------EEIDRPVI 156 (366)
T ss_pred EecCCCeEEEecHHHHhhcCCCCccc-CHHHhhhhhccCHHHHHHHHHHcCCCCceeec----Cc-------cccCccEE
Confidence 44457776765554444468899998 56777666 8899888899999999998742 32 35789999
Q ss_pred EEecCCCC--CccEEEeCCHHHHHHHHHHHHHHHHH-hcCCCcEEEEeccCCCcEEEEEEEEeC-CCcEEEEeeee--cc
Q 009323 226 IKATAGGG--GRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERD--CS 299 (537)
Q Consensus 226 vKp~~g~g--g~Gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lvEe~I~g~~e~~v~v~~d~-~g~v~~~~~r~--~~ 299 (537)
|||..|.| |+|+++++|.+|+....+++.....- .-+..+.++||||.| .++.++++.+. +|++..++... .+
T Consensus 157 VKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~es 235 (366)
T PRK13277 157 VKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQS 235 (366)
T ss_pred EEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeecccc
Confidence 99999999 99999999999998887665431100 001246689999999 89999999883 67655543321 11
Q ss_pred -------cccccc---------eeEEEcCCCCCCHHHHHHHHHHHHHHHHHcC------CcceeEEEEEEeCCCCEEEEE
Q 009323 300 -------IQRRNQ---------KLLEEAPSPALTPELRKAMGDAAVAAAASIG------YIGVGTVEFLLDERGSFYFME 357 (537)
Q Consensus 300 -------~~~~~~---------~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg------~~G~~~vEf~~~~~g~~~~lE 357 (537)
+..+.+ -.....|.. +.+.+.+++.+.+.+++++++ +.|++++|+++++++++|++|
T Consensus 236 n~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~E 314 (366)
T PRK13277 236 NLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-IRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYD 314 (366)
T ss_pred ccccccccChhhhhhcccCCceEEEcCcccc-chHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEE
Confidence 000001 122235554 777899999999999999976 569999999999889999999
Q ss_pred EecCCCCccccchhhcCCCHHHHHHH--HHcCCCCC
Q 009323 358 MNTRIQVEHPVTEMISSVDLIEEQIH--VAMGGKLR 391 (537)
Q Consensus 358 iNpR~~g~~~~~~~~~Gidl~~~~i~--~a~G~~l~ 391 (537)
||||++|+.++... .|.|+..++++ +.+|+++.
T Consensus 315 InpR~gGGtnl~~~-aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 315 VAPRIGGGTNVYMG-VGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EcCCcCCCccceee-cCCCcHHHHhcCccccCCcch
Confidence 99999988776543 69999999999 89998874
No 70
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.94 E-value=1.8e-24 Score=216.99 Aligned_cols=264 Identities=23% Similarity=0.308 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHH
Q 009323 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFV 161 (537)
Q Consensus 82 ~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~~se~~~~a 161 (537)
-...++++++++|+++..++.+.. .+.+.. + . ....++|++++...........+
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~-----------~~~~~~-~----~---------~~~~~~d~v~~r~~~~~~~~~~~ 65 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPAL-----------PLPFGE-R----P---------KELEDVDVAIIRCVSQSRALYSA 65 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhhe-----------EEEcCC-C----c---------cccCCCCEEEEcCcchhhHHHHH
Confidence 357889999999999998853211 111110 0 0 01135788777521111223456
Q ss_pred HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeC
Q 009323 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK 241 (537)
Q Consensus 162 ~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~ 241 (537)
..++..|+++++ +++++..+.||..++++|+++|||+|++ ..+.+.+++.++.++++||+|+||..|++|+|+.+++
T Consensus 66 ~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t--~~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~ 142 (280)
T TIGR02144 66 RLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRT--YLAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIR 142 (280)
T ss_pred HHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCe--EeeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEEC
Confidence 778889999985 6899999999999999999999999998 5677888888888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC-CcEEEEEEEEeCCCcEEEEeeeeccccccccee-EEEcCCCCCCHH
Q 009323 242 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL-LEEAPSPALTPE 319 (537)
Q Consensus 242 ~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g-~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~-~~~~p~~~l~~~ 319 (537)
+.+++.++++...... ...+..+++|+||++ .+++++.++.+ +..+...+.....+.+... ....|.. +++
T Consensus 143 ~~~~l~~~~~~~~~~~--~~~~~~~ivQefI~~~~~d~~v~vig~---~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~~- 215 (280)
T TIGR02144 143 DKDELESLLEHKEVLG--GSQHKLFYIQEYINKPGRDIRVFVIGD---EAIAAIYRYSNHWRTNTARGGKAEPCP-LDE- 215 (280)
T ss_pred CHHHHHHHHHHHHhhc--CCcCCeEEEEcccCCCCCceEEEEECC---EEEEEEEEcCCchhhhhhcCCceeccC-CCH-
Confidence 9999988775432111 011357999999986 37777777632 3333222211101111111 1122332 444
Q ss_pred HHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHc
Q 009323 320 LRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAM 386 (537)
Q Consensus 320 ~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~ 386 (537)
++.+.+.++++++|+ |.+++||+++++|++||+|||+|++.. -.+..+|+|+.+..++.+.
T Consensus 216 ---~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~--~~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 216 ---EVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFK--NSVRVTGVNVAGEILEYAV 276 (280)
T ss_pred ---HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchh--hhhHhhCCCHHHHHHHHHH
Confidence 567889999999997 799999999988789999999998543 3466799999999998764
No 71
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=3.6e-23 Score=208.12 Aligned_cols=280 Identities=22% Similarity=0.315 Sum_probs=212.8
Q ss_pred cEEEEEcCcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc
Q 009323 72 EKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR 142 (537)
Q Consensus 72 ~kvLi~g~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~ 142 (537)
+++.|+-.|.. +..++++++..|+++.-++...+... ..++... . ....
T Consensus 3 ~~vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~-----~~~~ 60 (317)
T COG1181 3 MKVAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLW----MLDKEVT-------------K-----RVLQ 60 (317)
T ss_pred eEEEEeeCCccccceEEEecHHHHHHHHhhcCceeEEEeccccceE----Eeccccc-------------h-----hhcc
Confidence 45555554443 78899999999999988865443211 1111110 0 1224
Q ss_pred CCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCC----CHHHHHHHH
Q 009323 143 GCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ----STEEAVKLA 217 (537)
Q Consensus 143 ~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~----s~~~~~~~~ 217 (537)
++|.++|. +|+..|+.....+++.+|+|++|++..+-....||..+|.+++..|+|++++. ... +...+.+..
T Consensus 61 ~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~--~~~~~~~~~~~~e~~~ 138 (317)
T COG1181 61 KADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYV--ALTRDEYSSVIVEEVE 138 (317)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCcccee--eeecccchhHHHHHhh
Confidence 58898988 78888999999999999999999999999999999999999999999999984 333 233345667
Q ss_pred HHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEee--
Q 009323 218 DELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-- 295 (537)
Q Consensus 218 ~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~-- 295 (537)
+..+||++|||...+++.|+.++++.+|+..+++.+... +.++++|+|+.+ +|++|.++.+.. ....++.
T Consensus 139 ~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~~-rei~v~vl~~~~-~~~~l~~~e 210 (317)
T COG1181 139 EGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDVLREQGITG-REIEVGVLGNDY-EEQALPLGE 210 (317)
T ss_pred cccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh------CCceeeccCCCc-ceEEEEecCCcc-cceecCceE
Confidence 789999999999999999999999999999988887765 589999999997 999999998744 2222211
Q ss_pred ee---cccccccceeE------EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEecCCCCc
Q 009323 296 RD---CSIQRRNQKLL------EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVE 365 (537)
Q Consensus 296 r~---~~~~~~~~~~~------~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~-~g~~~~lEiNpR~~g~ 365 (537)
.. ..+..+..|.. ..+|+. ++++..+++.++|.++.+++|..|++.+||++++ +|++|++|||+.++-.
T Consensus 211 I~~~~~~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t 289 (317)
T COG1181 211 IPPKGEEFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMT 289 (317)
T ss_pred EecCCCeEEeeeccccCCCCceeeCCCC-CCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCc
Confidence 10 11222222222 245664 9999999999999999999999999999999997 7889999999999743
Q ss_pred ----cccchhhcCCCHHHHHHHH
Q 009323 366 ----HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 366 ----~~~~~~~~Gidl~~~~i~~ 384 (537)
.|..-...|+++......+
T Consensus 290 ~~sl~P~~~~~~gi~~~~L~~~~ 312 (317)
T COG1181 290 AMSLFPKAAAAAGISFAILVLRF 312 (317)
T ss_pred ccccchhhHHHcCCCHHHHHHHH
Confidence 2344455788776665554
No 72
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.92 E-value=1.2e-23 Score=193.31 Aligned_cols=167 Identities=25% Similarity=0.415 Sum_probs=140.0
Q ss_pred HHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEe-cCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q 009323 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270 (537)
Q Consensus 192 l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp-~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe 270 (537)
|+++|+|+||| ..+.+.+++.++++++|||+|+|+ ..|..|+|++++++.+|+..+++.+ +..++++|+
T Consensus 1 l~~~gip~~~~--~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPY--ATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EE--EEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCe--EEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 67899999999 789999999999999999999995 5555999999999999999999876 358999999
Q ss_pred ccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC
Q 009323 271 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER 350 (537)
Q Consensus 271 ~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~ 350 (537)
||+..+|+++.+.++.+|++.++...+. .++.+......+|+. +++.+.+++.+++.+++++|+|.|++.|||+++++
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~yp~~en-~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~ 148 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRFYPPVEN-VHRDGILHESIAPAR-ISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKD 148 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEEEEEEEE-EEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETT
T ss_pred ccCCcEEEEEEEEEcCCCCEEEEcCceE-EEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecC
Confidence 9999999999999999999888876653 455566666678887 99999999999999999999999999999999999
Q ss_pred CC-EEEEEEecCCCCccccch
Q 009323 351 GS-FYFMEMNTRIQVEHPVTE 370 (537)
Q Consensus 351 g~-~~~lEiNpR~~g~~~~~~ 370 (537)
|+ +||.||.||++.+..+|.
T Consensus 149 g~~v~vNEiaPRpHnSGh~Ti 169 (172)
T PF02222_consen 149 GDEVLVNEIAPRPHNSGHWTI 169 (172)
T ss_dssp STEEEEEEEESS--GGGGGHH
T ss_pred CCEEEEEeccCCccCcccEee
Confidence 98 999999999998855543
No 73
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.90 E-value=2e-22 Score=191.46 Aligned_cols=186 Identities=23% Similarity=0.372 Sum_probs=136.1
Q ss_pred HHHHCCCCCCCCcCccCCCHHH--HHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 009323 191 TMKNAGVPTVPGSDGLLQSTEE--AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYL 268 (537)
Q Consensus 191 ~l~~~Gipvp~~~~~~~~s~~~--~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lv 268 (537)
+++++|||+|++....-.+... ..+....++||+||||..+++|.||.+|++.+||.++++++... +..++|
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceEEE
Confidence 5789999999994322223322 34567889999999999999999999999999999999987643 379999
Q ss_pred EeccCCCcEEEEEEEEeCCCcEEEEeeeecc-----cccc----cceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcc
Q 009323 269 EKYVQNPRHIEFQVLADKYGNVVHFGERDCS-----IQRR----NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIG 339 (537)
Q Consensus 269 Ee~I~g~~e~~v~v~~d~~g~v~~~~~r~~~-----~~~~----~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G 339 (537)
|+||+| +|++|.++.++...+....+.... +... ........|+. +++++.++|.++|.++.++||++|
T Consensus 75 EefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~~i~~~a~~a~~~lg~~~ 152 (203)
T PF07478_consen 75 EEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQEKIKEIAKKAFKALGCRG 152 (203)
T ss_dssp EE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHHHHHHHHHHHHHHTTTCS
T ss_pred Eeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999 999999999776555555443221 1111 13344556775 999999999999999999999999
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCCCc----cccchhhcCCCHHHHHHHH
Q 009323 340 VGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 340 ~~~vEf~~~~~g~~~~lEiNpR~~g~----~~~~~~~~Gidl~~~~i~~ 384 (537)
.+.+||+++++|++||+|+|+-++-+ .+..-...|+++-+..-++
T Consensus 153 ~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 153 YARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp EEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred ceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999989999999999998643 2333345788877766554
No 74
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.90 E-value=1.2e-23 Score=178.79 Aligned_cols=110 Identities=50% Similarity=0.822 Sum_probs=104.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+|||||+|||+++.+++++||++|++++++++++|..+.+..++|+.+.+++.+..++|+|.+.|++++++.++|++||
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 68999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHH
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i 179 (537)
||||++|++.|++.+++.|+.|+||++++|
T Consensus 81 Gyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 999999999999999999999999999875
No 75
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.89 E-value=4.9e-23 Score=223.14 Aligned_cols=266 Identities=24% Similarity=0.359 Sum_probs=188.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCcccccHHH----
Q 009323 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLAENAVF---- 160 (537)
Q Consensus 87 i~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~d~V~p~~g~~se~~~~---- 160 (537)
++-.+++|++.+.+++..+.++. |+.++++|.+..+ ++. +.|++.|++.++++++.. +|+..+
T Consensus 204 i~fY~klGf~~~~~y~~~d~~~~-----~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~ 272 (547)
T TIGR03103 204 IALYEKLGFRRIPVFALKRKNAI-----NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSL 272 (547)
T ss_pred HHHHHHCCCEEeeEEEEeccCCc-----CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecC
Confidence 33445667766666665555554 8888898766655 677 899999999999999954 233211
Q ss_pred ---HHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccE
Q 009323 161 ---VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGM 237 (537)
Q Consensus 161 ---a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv 237 (537)
+..++.. +.- -+++.++..+.||..++++|+++|||+|++ ..+.+.+++.++++++| |+||||..|++|+||
T Consensus 273 g~~~~~~~~s-~~~-~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~--~~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv 347 (547)
T TIGR03103 273 GGRSIRCRES-LSE-LTSAVAMSLCDDKRLTRRLVSEAGLQVPEQ--QLAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGI 347 (547)
T ss_pred CceEEEEEec-cCC-CCCHHHHHHhcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHhC-CEEEEECCCCCCcCe
Confidence 0111111 111 258999999999999999999999999999 66789999999999999 699999999999999
Q ss_pred EE-eCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeeccc----------------
Q 009323 238 RL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI---------------- 300 (537)
Q Consensus 238 ~~-v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~---------------- 300 (537)
++ +++.+++.++++.+... ...+++|+||+| .++.+.|+. |+++....|....
T Consensus 348 ~v~v~~~~eL~~a~~~a~~~------~~~vlvEe~i~G-~d~Rv~Vig---g~vvaa~~R~~~~V~GDG~~ti~~Lie~~ 417 (547)
T TIGR03103 348 SVDVRTPDDLEAAIAKARQF------CDRVLLERYVPG-EDLRLVVID---FEVVAAAVRRPPEVIGDGRSSIRDLIEKQ 417 (547)
T ss_pred EEecCCHHHHHHHHHHHHhc------CCcEEEEEeccC-CeEEEEEEC---CEEEEEEEecCcEEEeCCccCHHHHHHHH
Confidence 97 99999999999988654 268999999999 787665552 2444443332100
Q ss_pred cc-c---------------------------------cceeEE--------EcCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 009323 301 QR-R---------------------------------NQKLLE--------EAPSPALTPELRKAMGDAAVAAAASIGYI 338 (537)
Q Consensus 301 ~~-~---------------------------------~~~~~~--------~~p~~~l~~~~~~~i~~~a~~i~~alg~~ 338 (537)
.+ + .+.+.- ...+..+++.+.+++.+.|.++++++|+
T Consensus 418 n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl- 496 (547)
T TIGR03103 418 SRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDI- 496 (547)
T ss_pred hcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCC-
Confidence 00 0 000000 0111124556778899999999999999
Q ss_pred ceeEEEEEEeC--CCCEEEEEEecCCCCc-cccchhhcCCCHHHHHHHHH
Q 009323 339 GVGTVEFLLDE--RGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVA 385 (537)
Q Consensus 339 G~~~vEf~~~~--~g~~~~lEiNpR~~g~-~~~~~~~~Gidl~~~~i~~a 385 (537)
.++.||++.++ ...++|||+|.|++=. |. .-|..+..+++.
T Consensus 497 ~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h~------~~~~~~~~~d~l 540 (547)
T TIGR03103 497 PVVGIDFLVPDVTGPDYVIIEANERPGLANHE------PQPTAERFIDLL 540 (547)
T ss_pred CeEEEEEEeccCCCCCeEEEEecCCccccccC------CCchHHHHHHHh
Confidence 68889999874 2236999999999543 31 345566666654
No 76
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.87 E-value=9.9e-21 Score=211.61 Aligned_cols=254 Identities=22% Similarity=0.359 Sum_probs=191.4
Q ss_pred CCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE--------EEeCCCcccccHHHHHHHHHCCCceeCC
Q 009323 103 TIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM--------LHPGYGFLAENAVFVEMCREHGINFIGP 174 (537)
Q Consensus 103 ~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~--------V~p~~g~~se~~~~a~~~e~~gi~~~Gp 174 (537)
+.+....+.+.+++.++++|. ...|+++|++.++++ +++|||+.++. ++..+.. ++
T Consensus 141 ~~~~~~~~~~~~~~~~~lgps--------t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~------i~~~~~~--~~ 204 (727)
T PRK14016 141 DLEAALARLRELDEDERLGPS--------TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRR------IQAAETD--QT 204 (727)
T ss_pred CHHHHHHHHHHHHHhcccCCC--------HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHH------HHHhcCC--CC
Confidence 456667778888899988742 348999999999988 99999987653 3333333 68
Q ss_pred CHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEE-eCCHHHHHHHHHHH
Q 009323 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQA 253 (537)
Q Consensus 175 ~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~-v~~~~el~~~~~~~ 253 (537)
+..++..+.||..++++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|++|+||++ +++.+|+.++++.+
T Consensus 205 s~~a~~i~~DK~~tk~lL~~~GIPvP~~--~~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 205 SAIAVDIACDKELTKRLLAAAGVPVPEG--RVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred cHHHHHHhCCHHHHHHHHHHCCcCCCCe--eEeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 9999999999999999999999999999 67899999999999999999999999999999998 99999999999987
Q ss_pred HHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeeccc-------------c------ccc----------
Q 009323 254 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI-------------Q------RRN---------- 304 (537)
Q Consensus 254 ~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~-------------~------~~~---------- 304 (537)
... ...++||+||+| +++.+.++ .|+++....|.... . ++.
T Consensus 283 ~~~------~~~viVEe~I~G-~d~Rv~Vv---gg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i 352 (727)
T PRK14016 283 SKE------SSDVIVERYIPG-KDHRLLVV---GGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKI 352 (727)
T ss_pred HHh------CCeEEEEEecCC-ceEEEEEE---CCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCccccc
Confidence 654 268999999999 88888766 34677665543210 0 000
Q ss_pred ------------------------ceeEE-E-------cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC---
Q 009323 305 ------------------------QKLLE-E-------APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE--- 349 (537)
Q Consensus 305 ------------------------~~~~~-~-------~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~--- 349 (537)
+++.- . .-+...++.+.+++.+.|.++++.+|+ +++.||++.++
T Consensus 353 ~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~ 431 (727)
T PRK14016 353 KLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISK 431 (727)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCccc
Confidence 00000 0 001123455677888999999999998 88889998863
Q ss_pred ----CCCEEEEEEecCCCCcc-ccchhhcCCCHHHHHHHHHc
Q 009323 350 ----RGSFYFMEMNTRIQVEH-PVTEMISSVDLIEEQIHVAM 386 (537)
Q Consensus 350 ----~g~~~~lEiNpR~~g~~-~~~~~~~Gidl~~~~i~~a~ 386 (537)
+| ..++|||..++-.. .......+.|.....+....
T Consensus 432 p~~~~~-~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~L~ 472 (727)
T PRK14016 432 PLEEQG-GAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDMLF 472 (727)
T ss_pred ccccCC-cEEEEEcCCcchhhccCCCCCcchhHHHHHHHHhc
Confidence 34 89999999995542 21223345666666665543
No 77
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3e-20 Score=187.45 Aligned_cols=286 Identities=22% Similarity=0.298 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccC-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc-H
Q 009323 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-A 158 (537)
Q Consensus 81 ~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~~se~-~ 158 (537)
....+..+++++.|+++..++............+- ....+.. .....|. .............|++++..+..... .
T Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~D~i~~R~~~~~~~~~ 94 (318)
T COG0189 17 DTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGE-VIGLHYE-LIEEEDLSLLDELDVIIMRKDPPFDFAT 94 (318)
T ss_pred chHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhh-ccccccc-cccccccchhccCCEEEEecCCchhhHH
Confidence 34678889999999999888643221111111110 0000000 0000010 00111122334689999875543333 4
Q ss_pred HHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHH-HHhCCcEEEEecCCCCCccE
Q 009323 159 VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLA-DELGFPVMIKATAGGGGRGM 237 (537)
Q Consensus 159 ~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~-~~ig~PvvvKp~~g~gg~Gv 237 (537)
.+++.+|..|.+++ ++++++..+.||..+.+++..+|+|+|++ ....+.+++..+. +.+|||+|+||.+|++|+||
T Consensus 95 ~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T--~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV 171 (318)
T COG0189 95 RFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPT--LITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGV 171 (318)
T ss_pred HHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCE--EEEcCHHHHHHHHHHhcCCCEEEeeCCCCCccce
Confidence 56778999999998 78999999999999999999999999999 7788876666665 46679999999999999999
Q ss_pred EEeCCHH-HHHHHHHHHHHHHHHhcCCCcEEEEeccCCCc-EEEEEEEEeCCCcEEEEe--eeec--ccccccceeEEEc
Q 009323 238 RLAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR-HIEFQVLADKYGNVVHFG--ERDC--SIQRRNQKLLEEA 311 (537)
Q Consensus 238 ~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~-e~~v~v~~d~~g~v~~~~--~r~~--~~~~~~~~~~~~~ 311 (537)
+++++.+ ++.+.++...+.. ...+|+|+||+-+. .+..-++.+ +.++... .|.. .-.+.+...+...
T Consensus 172 ~~v~~~d~~l~~~~e~~~~~~-----~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~R~~~~~~~R~N~a~Gg~~ 244 (318)
T COG0189 172 FLVEDADPELLSLLETLTQEG-----RKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALARIPASGDFRSNLARGGRA 244 (318)
T ss_pred EEecCCChhHHHHHHHHhccc-----cceEehhhhcCcccCCcEEEEEeC--CEEeEEeeeccccCCCCceeeccccccc
Confidence 9999999 8888887765432 34699999999854 344444433 3555532 2211 1122222222222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHH
Q 009323 312 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 385 (537)
Q Consensus 312 p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a 385 (537)
....+++ ++.+.|.++++++|+ ++..+|++.+++| +||+|||..+ ..-..++..+|+|....+++..
T Consensus 245 e~~~l~~----e~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP-~~~~~i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 245 EPCELTE----EEEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSP-TGKGEIERVTGVNIAGLIIDAI 311 (318)
T ss_pred cccCCCH----HHHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCC-ccccchhhhcCCchHHHHHHHH
Confidence 2222555 556899999999987 8889999999888 9999999955 3444556667888888777654
No 78
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.86 E-value=9.3e-21 Score=175.75 Aligned_cols=174 Identities=27% Similarity=0.420 Sum_probs=136.0
Q ss_pred cCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcE-EEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhc
Q 009323 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV-MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF 261 (537)
Q Consensus 183 ~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~Pv-vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~ 261 (537)
.+|..+|++|+++|||++++ ..++|.+++.+++++.++|+ ||||..-++|+||.++.+.+|..++++++... ..|
T Consensus 1 ~SK~faK~fm~~~~IPTa~~--~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~f 76 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKY--KVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKF 76 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--E--EEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STT
T ss_pred CCHHHHHHHHHHcCCCCCCe--eEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--ccc
Confidence 37999999999999999998 78999999999999999999 99999999999999999999999999988753 245
Q ss_pred C--CCcEEEEeccCCCcEEEEEEEEeCCCcEEEEee-eecc------cccccceeEEEcCCCCCCHHHHHHHHH-HHHHH
Q 009323 262 G--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDCS------IQRRNQKLLEEAPSPALTPELRKAMGD-AAVAA 331 (537)
Q Consensus 262 ~--~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~-r~~~------~~~~~~~~~~~~p~~~l~~~~~~~i~~-~a~~i 331 (537)
+ ...++||||+.| .|+++.++.|+. +++.+.. +|+. ...+......++|.+.+++++.+++.+ +....
T Consensus 77 g~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt 154 (194)
T PF01071_consen 77 GDAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPT 154 (194)
T ss_dssp CCCGSSEEEEE---S-EEEEEEEEEESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHH
T ss_pred CCCCCcEEEEeccCC-eEEEEEEEEcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHH
Confidence 4 469999999999 999999999987 5555532 2321 111222455678998889888877776 55666
Q ss_pred HHHc-----CCcceeEEEEEEeCCCCEEEEEEecCCC
Q 009323 332 AASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQ 363 (537)
Q Consensus 332 ~~al-----g~~G~~~vEf~~~~~g~~~~lEiNpR~~ 363 (537)
+++| .|.|+..+.++++++| +++||.|.|++
T Consensus 155 ~~~l~~eg~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 155 LKGLKKEGIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHHTT---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred HHHHHhcCCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 6655 6779999999999999 99999999994
No 79
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.84 E-value=7.2e-20 Score=174.05 Aligned_cols=296 Identities=20% Similarity=0.206 Sum_probs=207.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC---EEEe
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT---MLHP 149 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d---~V~p 149 (537)
-|+|+|+..-...++|+..+..+.+.++..+.- ...+.+++.+.... +..++...+..+.++|.+++-. .|-.
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~~ls~d~p-lPt~Sr~vr~t~~w---~gphd~gaiafLrd~Aekhglkg~LLva~ 80 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVLALSADGP-LPTYSRIVRVTTHW---NGPHDEGAIAFLRDFAEKHGLKGYLLVAC 80 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEEEEecCCC-Ccchhhhheeeecc---CCCCcccHHHHHHHHHhhcCcCceEEEec
Confidence 589999888888999999999988888864433 33367777766654 3334455678889999887754 3333
Q ss_pred CCCcccccHHHHHHHHHC--CCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEE
Q 009323 150 GYGFLAENAVFVEMCREH--GINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~--gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvK 227 (537)
|-| |.....+..+++ -..++-|+....+.+.+|..++..+.+.|+|+|.+ ..++|..+. .+.++-||+|+|
T Consensus 81 GDg---ev~lvSq~reeLSa~f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~T--y~v~S~~d~--~~~el~FPvILK 153 (415)
T COG3919 81 GDG---EVLLVSQYREELSAFFEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKT--YLVNSEIDT--LVDELTFPVILK 153 (415)
T ss_pred CCc---eeeehHhhHHHHHHHhcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcce--EEecchhhh--hhhheeeeEEec
Confidence 333 221122222221 12334589999999999999999999999999999 567776664 456789999999
Q ss_pred ecCCCC-----CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcE--EEEEEEEeCCCcEEEEeeeeccc
Q 009323 228 ATAGGG-----GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH--IEFQVLADKYGNVVHFGERDCSI 300 (537)
Q Consensus 228 p~~g~g-----g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e--~~v~v~~d~~g~v~~~~~r~~~~ 300 (537)
|-.|++ -.-++.+.+.+|++.++..+..+. +.++++||+||+|+.| ++...+.|+...+..+..+
T Consensus 154 P~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei----gpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftar---- 225 (415)
T COG3919 154 PGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEI----GPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTAR---- 225 (415)
T ss_pred CCCCCcceeehhhheeeccCHHHHHHHHHHHHHhc----CCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcc----
Confidence 998884 234667789999999998887664 5689999999999544 5555666744344322222
Q ss_pred ccccceeEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-CCCCEEEEEEecCCCCccccchhhcCCCHH
Q 009323 301 QRRNQKLLEEA-PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLI 378 (537)
Q Consensus 301 ~~~~~~~~~~~-p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~-~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~ 378 (537)
+-.|.-.... .+....-...+++.+.++++++.+++.|...+||++| .||.++++|||||+.....+. .+.|+||-
T Consensus 226 -r~rqyPvdfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~-taaG~nLg 303 (415)
T COG3919 226 -RLRQYPVDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLV-TAAGYNLG 303 (415)
T ss_pred -hhhcCCcccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeEE-eccccccc
Confidence 1111100000 0000001114688899999999999999999999999 789999999999986554444 34799999
Q ss_pred HHHHHHHcCCC
Q 009323 379 EEQIHVAMGGK 389 (537)
Q Consensus 379 ~~~i~~a~G~~ 389 (537)
..++....+.+
T Consensus 304 ~~Lwa~~~~~~ 314 (415)
T COG3919 304 RYLWADRINNE 314 (415)
T ss_pred ceEEeeecCCc
Confidence 99888887764
No 80
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.84 E-value=5.5e-21 Score=175.45 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=90.4
Q ss_pred hcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhc
Q 009323 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF 261 (537)
Q Consensus 182 ~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~ 261 (537)
|.||..++++|+++|||+|... ..... ....+|+|+||..|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 5799999999999999999431 11111 12378999999999999999999999988766543
Q ss_pred CCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeeccccc---ccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CC
Q 009323 262 GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR---RNQKLLEEAPSPALTPELRKAMGDAAVAAAASI-GY 337 (537)
Q Consensus 262 ~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~---~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~al-g~ 337 (537)
..++|+||+| .++++.++.++. +...++.....+.. .....+...|.. ....+++.+++.++++++ |+
T Consensus 63 ---~~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~i~~~l~gl 134 (161)
T PF02655_consen 63 ---LRIVQEFIEG-EPYSVSFLASGG-GARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKEEIIELARRIAEALPGL 134 (161)
T ss_dssp -----EEEE---S-EEEEEEEEE-SS-SEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT-
T ss_pred ---ceEEeeeeCC-EEeEEEEEEeCC-ceEEEEechHhhccccceeeecccccccC---CchHHHHHHHHHHHHHHcCCC
Confidence 2399999999 999999999865 55555443322221 133444455543 344889999999999999 99
Q ss_pred cceeEEEEEEeCCCCEEEEEEecCCCCc
Q 009323 338 IGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (537)
Q Consensus 338 ~G~~~vEf~~~~~g~~~~lEiNpR~~g~ 365 (537)
.|.+.+||+++++ ++|+||||||++++
T Consensus 135 ~G~~giD~I~~~~-~~~viEINPR~t~S 161 (161)
T PF02655_consen 135 RGYVGIDFILDDG-GPYVIEINPRFTGS 161 (161)
T ss_dssp -EEEEEEEEESS--SEEEEEEESS--GG
T ss_pred eeeEeEEEEEeCC-cEEEEEEcCCCCCC
Confidence 9999999999984 59999999999753
No 81
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.82 E-value=1.7e-19 Score=170.36 Aligned_cols=183 Identities=28% Similarity=0.436 Sum_probs=111.0
Q ss_pred hcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh-CCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHh
Q 009323 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (537)
Q Consensus 182 ~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~ 260 (537)
+.||..+.++|+++|||+|++ ..+.+.+++.++.+++ +||+|+||..|+.|.||.++++.+++...++.....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t--~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~---- 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPET--RVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL---- 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----E--EEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred CCCHHHHHHHHHHCCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc----
Confidence 369999999999999999999 7889999999999999 899999999999999999999999999988765432
Q ss_pred cCCCcEEEEeccCCC--cEEEEEEEEeCCCcEEEEeeeeccc--cccc-ceeEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q 009323 261 FGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGERDCSI--QRRN-QKLLEEAPSPALTPELRKAMGDAAVAAAASI 335 (537)
Q Consensus 261 ~~~~~~lvEe~I~g~--~e~~v~v~~d~~g~v~~~~~r~~~~--~~~~-~~~~~~~p~~~l~~~~~~~i~~~a~~i~~al 335 (537)
+..+++|+||+.. +++.|.++. |+++....|...- ++.+ ..-....|. .+.+++.+.+.++++++
T Consensus 75 --~~~~~~Q~fI~~~~g~d~Rv~Vig---~~vv~a~~r~~~~~d~r~n~~~g~~~~~~-----~l~~e~~~~a~~~~~~l 144 (190)
T PF08443_consen 75 --ENPILVQEFIPKDGGRDLRVYVIG---GKVVGAYRRSSPEGDFRTNLSRGGKVEPY-----DLPEEIKELALKAARAL 144 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEET---TEEEEEEE------------------EE---------HHHHHHHHHHHHHT
T ss_pred --cCcceEeccccCCCCcEEEEEEEC---CEEEEEEEEecCcccchhhhccCceEEEe-----cCCHHHHHHHHHHHHHh
Confidence 3688999999974 488888873 3676655543211 1111 111111222 23356778899999999
Q ss_pred CCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHH
Q 009323 336 GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 336 g~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~ 384 (537)
|+ ..+.+|++.+++| +||+|||+.+ +....+..+|+|+.+.+++.
T Consensus 145 gl-~~~giDi~~~~~~-~~v~EvN~~~--~~~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 145 GL-DFAGIDILDTNDG-PYVLEVNPNP--GFRGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp T--SEEEEEEEEETTE-EEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred CC-CEEEEEEEecCCC-eEEEEecCCc--hHhHHHHHHCcCHHHHHHhh
Confidence 98 7888997665655 9999999998 56678888999999988763
No 82
>PRK12458 glutathione synthetase; Provisional
Probab=99.76 E-value=5.6e-17 Score=166.14 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=173.2
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCC--CCCCCCCHHHHHHHH-------HHcCCCEEEe
Q 009323 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP--SSQSYLLIPNVLSAA-------ISRGCTMLHP 149 (537)
Q Consensus 79 ~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~--~~~~~~~~~~i~~~a-------~~~~~d~V~p 149 (537)
...+..+++.+|++.||++.++....-........+.-...+.... ..+.+ ....+.. .-..+|+|++
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~V~~ 85 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENF---LSFLKKAEFKKERLPLAGFDVIFL 85 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccch---hhHhhccccccccCchhhCCEEEE
Confidence 3456889999999999999988432211010111111111121000 00100 0011110 1134899998
Q ss_pred CCC--cccccHHHH--------HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHH
Q 009323 150 GYG--FLAENAVFV--------EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (537)
Q Consensus 150 ~~g--~~se~~~~a--------~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ 219 (537)
..+ +..+...++ ..++..|++++ ++++++..+.||..+..+++ +++|++ ....+.+++.+++++
T Consensus 86 R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T--~v~~~~~~~~~~~~~ 159 (338)
T PRK12458 86 RANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTT--HISRNKEYIREFLEE 159 (338)
T ss_pred eCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCE--EEeCCHHHHHHHHHH
Confidence 632 221112222 23356788877 89999999999999977655 678887 567888999999999
Q ss_pred hCCc-EEEEecCCCCCccEEEeCCHHH--HHHHHHHHHHHHHHhcCCCcEEEEeccCCC--cEEEEEEEEeCCCcEE---
Q 009323 220 LGFP-VMIKATAGGGGRGMRLAKEPDE--FVKLLQQAKSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVV--- 291 (537)
Q Consensus 220 ig~P-vvvKp~~g~gg~Gv~~v~~~~e--l~~~~~~~~~~~~~~~~~~~~lvEe~I~g~--~e~~v~v~~d~~g~v~--- 291 (537)
+++| +|+||..|+||+||+++++.++ +...++.... ...+++|+||++. .++.+.++ +|+++
T Consensus 160 ~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv---~g~~v~~~ 229 (338)
T PRK12458 160 SPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL---NGEPLERD 229 (338)
T ss_pred cCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE---CCEEEeec
Confidence 9775 9999999999999999987664 5555554321 3589999999963 35555554 34666
Q ss_pred ---EEeeeecc--cccccceeEE-EcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceeEEEEEEeCCCCEEEEEEecCC
Q 009323 292 ---HFGERDCS--IQRRNQKLLE-EAPSPALTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDERGSFYFMEMNTRI 362 (537)
Q Consensus 292 ---~~~~r~~~--~~~~~~~~~~-~~p~~~l~~~~~~~i~~~a~~i~~al---g~~G~~~vEf~~~~~g~~~~lEiNpR~ 362 (537)
+...|... -.+.+..... ..+. .++++ +.+.|.++...+ |+ ..+.+|++ | .+++|||++-
T Consensus 230 g~~~a~~R~~~~~d~RsN~~~Gg~~~~~-~l~~~----~~~ia~~~~~~l~~~GL-~~~gVDli----~-~~l~EIN~~s 298 (338)
T PRK12458 230 GHYAAMRRVPAGGDVRSNVHAGGSVVKH-TLTKE----ELELCEAIRPKLVRDGL-FFVGLDIV----G-DKLVEVNVFS 298 (338)
T ss_pred cceeEEEEecCCCCeeecccCCCcccCc-CCCHH----HHHHHHHHHHHHhhcCC-eEEeEEEE----C-CEEEEEeCCC
Confidence 55444221 1111111111 1222 24544 445666665555 55 57789997 2 3799999998
Q ss_pred CCccccchhhcCCCHHHHHHHHHc
Q 009323 363 QVEHPVTEMISSVDLIEEQIHVAM 386 (537)
Q Consensus 363 ~g~~~~~~~~~Gidl~~~~i~~a~ 386 (537)
+++.+..+..+|+|+.+..++...
T Consensus 299 p~g~~~~~~~~g~d~a~~i~~~i~ 322 (338)
T PRK12458 299 PGGLTRINKLNKIDFVEDIIEALE 322 (338)
T ss_pred cchHHHHHHHhCCCHHHHHHHHHH
Confidence 888777788899999999998764
No 83
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=149.70 Aligned_cols=194 Identities=19% Similarity=0.305 Sum_probs=145.4
Q ss_pred HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccE
Q 009323 158 AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGM 237 (537)
Q Consensus 158 ~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv 237 (537)
..+.+..++. ...+|+|+++++.+.||+.+.+.|+++ +++|+++. + ...+--.|+||.+|.||.|+
T Consensus 89 y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e-----------~-~~~~~k~ViKp~dgCgge~i 154 (307)
T COG1821 89 YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE-----------W-AEEPKKYVIKPADGCGGEGI 154 (307)
T ss_pred HHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc-----------c-ccCCceEEecccccCCccee
Confidence 4566777776 566799999999999999999999999 99999841 1 12345689999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccc-cccceeEEEcCCCCC
Q 009323 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-RRNQKLLEEAPSPAL 316 (537)
Q Consensus 238 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~-~~~~~~~~~~p~~~l 316 (537)
....+..++ +++|+||+| .|.||. +.++. ++..+...+.-+. ..........+.+ .
T Consensus 155 ~~~~~~pd~-------------------~i~qEfIeG-~~lSVS-L~~GE-kv~pLsvNrQfi~~~~~~~~y~gg~~p-i 211 (307)
T COG1821 155 LFGRDFPDI-------------------EIAQEFIEG-EHLSVS-LSVGE-KVLPLSVNRQFIIFAGSELVYNGGRTP-I 211 (307)
T ss_pred eccCCCcch-------------------hhHHHhcCC-cceEEE-EecCC-ccccceechhhhhhccceeeeccCcCC-C
Confidence 998776552 578999999 999999 44544 5554443222111 1111122234454 6
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHHHcCCCC
Q 009323 317 TPELRKAMGDAAVAAAASIG-YIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390 (537)
Q Consensus 317 ~~~~~~~i~~~a~~i~~alg-~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~a~G~~l 390 (537)
+.++.+++.+.|.++++.++ +.|...||+++. |+ +|++|||||+....--...+++-++.+.++.-..|.-+
T Consensus 212 ~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~-pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~~ 284 (307)
T COG1821 212 DHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DE-PYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKVL 284 (307)
T ss_pred CcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CC-cEEEEecCCCCcceeeeeccccHHHHHHHhcCcccccc
Confidence 67899999999999999996 889999999998 44 99999999995554455566888888888877777654
No 84
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.71 E-value=2.6e-15 Score=152.58 Aligned_cols=273 Identities=16% Similarity=0.160 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCChhh--hccC-EEEEcCCCCCCCCCCCHH--HHHHHHHHcCCCEEEeCCC--cc
Q 009323 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHV--KLAD-ESVCIGEAPSSQSYLLIP--NVLSAAISRGCTMLHPGYG--FL 154 (537)
Q Consensus 82 ~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~--~~ad-~~~~i~~~~~~~~~~~~~--~i~~~a~~~~~d~V~p~~g--~~ 154 (537)
+..+++.+++++|+++.+++.+. ..... -.+. ..+.+.. . ...+.... ....+ ..+|+|++-.+ +.
T Consensus 19 st~~L~~aa~~rG~~v~~~~~~~--l~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~l---~~~D~v~~R~~~~~~ 91 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEPGD--LSVVNGEVFARARPVRVGP-N-KQDWYTLGEKVRLSL---GELDAVLMRKDPPFD 91 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEehhh--eEEECCEEEEEEEEEEecc-C-CcceeecCccccccc---ccCCEEEEeCCCCCC
Confidence 57899999999999999985321 11111 1111 0122210 0 11111100 11111 24899997643 21
Q ss_pred ccc---HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCC
Q 009323 155 AEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (537)
Q Consensus 155 se~---~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g 231 (537)
.+. ..+.+.++..|.+++ +++++++.+.||..+.+++. ++|++ ....+.+++.+++++.| |+|+||..|
T Consensus 92 ~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T--~v~~~~~~~~~~~~~~g-~vVvKPl~G 163 (312)
T TIGR01380 92 MEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPT--LVTRDKAEIRAFLAEHG-DIVLKPLDG 163 (312)
T ss_pred hhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCE--EEeCCHHHHHHHHHHcC-CEEEEECCC
Confidence 111 467788888999887 78999999999999887753 79998 56779999999999998 999999999
Q ss_pred CCCccEEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEEeccCC--CcEEEEEEEEeCCCcEEE-Eeeeecc--cccccc
Q 009323 232 GGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCS--IQRRNQ 305 (537)
Q Consensus 232 ~gg~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g--~~e~~v~v~~d~~g~v~~-~~~r~~~--~~~~~~ 305 (537)
++|+|++++++. .++...++.... .+...+++|+||+. ..++.+.++. |+++. ...|... ..+.+.
T Consensus 164 ~~G~gv~~v~~~~~~~~~~~~~~~~-----~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N~ 235 (312)
T TIGR01380 164 MGGEGIFRLDPGDPNFNSILETMTQ-----RGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGNL 235 (312)
T ss_pred CCCceEEEEcCCCccHHHHHHHHHh-----ccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCccccc
Confidence 999999998753 334333333221 12468999999984 3688887763 46654 3333211 112221
Q ss_pred ee-EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHH
Q 009323 306 KL-LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 306 ~~-~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~ 384 (537)
.. ....+.. ++++.. ++.+.+...++++|+ ..+.||++ | .||+|||.--+.++.-.+..+|+|+.+..++.
T Consensus 236 ~~Gg~~~~~~-l~~e~~-~ia~~~~~~~~~~gl-~~agVDii----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~ 307 (312)
T TIGR01380 236 AVGGRGEATE-LSERDR-EICADVAPELKRRGL-LFVGIDVI----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDA 307 (312)
T ss_pred cCCceeeccC-CCHHHH-HHHHHHHHHHHhcCC-cEEEEEEe----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHH
Confidence 11 1223332 555433 444444444566676 67789998 4 57999998744456566777999999998876
Q ss_pred H
Q 009323 385 A 385 (537)
Q Consensus 385 a 385 (537)
.
T Consensus 308 l 308 (312)
T TIGR01380 308 I 308 (312)
T ss_pred H
Confidence 4
No 85
>PRK05246 glutathione synthetase; Provisional
Probab=99.70 E-value=2.4e-15 Score=153.26 Aligned_cols=274 Identities=16% Similarity=0.143 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCChhhhc--cC-EEEEcCCCCCCCCCCCHH--HHHHHHHHcCCCEEEeCCCc--c
Q 009323 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL--AD-ESVCIGEAPSSQSYLLIP--NVLSAAISRGCTMLHPGYGF--L 154 (537)
Q Consensus 82 ~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~--ad-~~~~i~~~~~~~~~~~~~--~i~~~a~~~~~d~V~p~~g~--~ 154 (537)
+..+++++++++|++++.++... ....... +. ..+.+.. ..+.+.... ....+ ..+|+|++..+. .
T Consensus 20 st~~l~~aa~~~G~~v~~~~~~d--l~~~~~~i~~~~~~~~~~~--~~~~w~~~~~~~~~~l---~~~D~v~~R~~~~~~ 92 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPDD--LSLRGGEVVARARPLTVRD--DKGDWYELGEEQRLPL---ADFDVILMRKDPPFD 92 (316)
T ss_pred hHHHHHHHHHHcCCEEEEEehhh--cEEECCEEEEEEEEEEecc--CCccceeccccccCcc---ccCCEEEEcCCCCCC
Confidence 47889999999999999885321 1111110 10 0011111 111111100 01111 238999976322 1
Q ss_pred cc---cHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCC
Q 009323 155 AE---NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (537)
Q Consensus 155 se---~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g 231 (537)
.+ ...+.+.++..|++++ ++++++..+.||..+.+++. ++|++ ....+.+++.++.++.+ |+|+||..|
T Consensus 93 ~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T--~~~~~~~~~~~~~~~~~-~vVlKP~~G 164 (316)
T PRK05246 93 MEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPT--LVTRDKAEIRAFRAEHG-DIILKPLDG 164 (316)
T ss_pred hHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCE--EEeCCHHHHHHHHHHCC-CEEEEECCC
Confidence 11 1245667777899887 78999999999999988765 78888 67888999999999988 999999999
Q ss_pred CCCccEEEeCC-HHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC--CcEEEEEEEEeCCCcEEE-Eeeeecc--cccccc
Q 009323 232 GGGRGMRLAKE-PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCS--IQRRNQ 305 (537)
Q Consensus 232 ~gg~Gv~~v~~-~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g--~~e~~v~v~~d~~g~v~~-~~~r~~~--~~~~~~ 305 (537)
++|+||.++.. ..++...++.+.. .+...+++|+||+. ..++.+.++ +|++++ ...|... ..+.+.
T Consensus 165 ~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~a~~R~~~~~~~rtN~ 236 (316)
T PRK05246 165 MGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV---DGEPVGYALARIPAGGETRGNL 236 (316)
T ss_pred CCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE---CCEEhhheeEecCCCCCcccCc
Confidence 99999999954 4444444443322 23468999999986 357887776 346776 5444321 112221
Q ss_pred ee-EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCccccchhhcCCCHHHHHHHH
Q 009323 306 KL-LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 306 ~~-~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~ 384 (537)
.. ....|.. ++++. .++...+.+.++.+|+ ..+.||++ | .||+|||..-+++....+..+|+|+.+..++.
T Consensus 237 ~~Gg~~~~~~-l~~~~-~~ia~~~~~~l~~~gl-~~~GVDli----~-~~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~ 308 (316)
T PRK05246 237 AAGGRGEATP-LTERD-REICAAIGPELKERGL-IFVGIDVI----G-DYLTEINVTSPTGIREIERLTGVDIAGMLWDA 308 (316)
T ss_pred cCCceEeccC-CCHHH-HHHHHHHHHHHHHhCC-CEEEEEEe----C-CEEEEEeCCCchHHHHHHHHhCCCHHHHHHHH
Confidence 11 1223333 55443 3344444444466666 57889998 3 27999998744568888889999999999887
Q ss_pred Hc
Q 009323 385 AM 386 (537)
Q Consensus 385 a~ 386 (537)
..
T Consensus 309 ~~ 310 (316)
T PRK05246 309 IE 310 (316)
T ss_pred HH
Confidence 65
No 86
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.70 E-value=1.1e-15 Score=174.49 Aligned_cols=241 Identities=24% Similarity=0.326 Sum_probs=169.5
Q ss_pred CHHHHHHHHHHcCCCEEEeCCCccccc--HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCC
Q 009323 131 LIPNVLSAAISRGCTMLHPGYGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ 208 (537)
Q Consensus 131 ~~~~i~~~a~~~~~d~V~p~~g~~se~--~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~ 208 (537)
.-..|++.|.+.++....-..|.+... ....+..... ..--.+..++..+.||..++++|+++|||+|++ ..+.
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~~--~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~--~~~~ 235 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQAT--ETDRTSAIAVEIACDKDLTKEILSDAGVPVPEG--TVVQ 235 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEee--cCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCE--EEEC
Confidence 346888888888877655332211110 0000001101 011257889999999999999999999999998 6789
Q ss_pred CHHHHHHHHHHhCCcEEEEecCCCCCccEEE-eCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCC
Q 009323 209 STEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (537)
Q Consensus 209 s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~ 287 (537)
+.+++.++++++|||+||||..|++|+||.+ +++.+|+.++++.+... +..++||+||+| +|+++.++ .
T Consensus 236 s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~G-~e~rvlVv---~ 305 (864)
T TIGR02068 236 SAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFITG-RDHRLLVV---G 305 (864)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEeccC-CEEEEEEE---C
Confidence 9999999999999999999999999999998 99999999999987654 368999999999 99999776 3
Q ss_pred CcEEEEeeeeccc-------------c------ccc---cee-------------------------------EE-----
Q 009323 288 GNVVHFGERDCSI-------------Q------RRN---QKL-------------------------------LE----- 309 (537)
Q Consensus 288 g~v~~~~~r~~~~-------------~------~~~---~~~-------------------------------~~----- 309 (537)
|+++....|.... . ++. .+. .-
T Consensus 306 ~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~N 385 (864)
T TIGR02068 306 GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATAN 385 (864)
T ss_pred CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEecccc
Confidence 4777775554311 0 000 000 00
Q ss_pred ---EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC------CCCEEEEEEecCCCCc-cccchhhcCCCHHH
Q 009323 310 ---EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE------RGSFYFMEMNTRIQVE-HPVTEMISSVDLIE 379 (537)
Q Consensus 310 ---~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~------~g~~~~lEiNpR~~g~-~~~~~~~~Gidl~~ 379 (537)
..-+...++.+.++..+.|.++++++|+ .++.+|++..+ .....++|+|+.++-. |..-..-.+.++..
T Consensus 386 ls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~ 464 (864)
T TIGR02068 386 LSTGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVAR 464 (864)
T ss_pred ccCCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHH
Confidence 0011124556777888999999999999 66679998752 2236899999998543 44434445677777
Q ss_pred HHHHHHc
Q 009323 380 EQIHVAM 386 (537)
Q Consensus 380 ~~i~~a~ 386 (537)
.+++...
T Consensus 465 ~Il~~lf 471 (864)
T TIGR02068 465 AIVDMLF 471 (864)
T ss_pred HHHHHhc
Confidence 7777664
No 87
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.68 E-value=2.5e-15 Score=167.70 Aligned_cols=198 Identities=21% Similarity=0.295 Sum_probs=143.5
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh-CCcEEEEecCCCCCccEEEe---CCHHHHHHH
Q 009323 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLA---KEPDEFVKL 249 (537)
Q Consensus 174 p~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v---~~~~el~~~ 249 (537)
.+..+...++||..++++|+++|||+|++ ..+.+.+++.+.++++ |||+||||..|++|+||.++ .+.+++.++
T Consensus 478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~--~~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 478 DNYISPLIMENKVVTKKILAEAGFPVPAG--DEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CHHHHHHHhhCHHHHHHHHHHCCcCCCCE--EEEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence 34556788899999999999999999998 6778888887777664 89999999999999999986 468888888
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecc-------------cccccc---------ee
Q 009323 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS-------------IQRRNQ---------KL 307 (537)
Q Consensus 250 ~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~-------------~~~~~~---------~~ 307 (537)
++.+.+. +..++|||||+| +|++|.|+. |+++....|... +...+. +.
T Consensus 556 ~~~a~~~------~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~ 625 (752)
T PRK02471 556 LEIAFRE------DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTP 625 (752)
T ss_pred HHHHHhc------CCcEEEEecccC-CEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccc
Confidence 8876543 368999999999 999998873 466666544221 000000 00
Q ss_pred ---E-----------------EEcC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe
Q 009323 308 ---L-----------------EEAP-------------------SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD 348 (537)
Q Consensus 308 ---~-----------------~~~p-------------------~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~ 348 (537)
+ ..-| +..+++.+.+...+.|.++++++|+. ++.||++..
T Consensus 626 l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~ 704 (752)
T PRK02471 626 LEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIP 704 (752)
T ss_pred ccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeC
Confidence 0 0001 11255677788999999999999985 666999986
Q ss_pred C--C----C--CEEEEEEecCCCCc-cccchhhcCCCHHHHHHHH
Q 009323 349 E--R----G--SFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 349 ~--~----g--~~~~lEiNpR~~g~-~~~~~~~~Gidl~~~~i~~ 384 (537)
+ + . ...|||+|.+++-. |..-..-...|+.+..++.
T Consensus 705 di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d~ 749 (752)
T PRK02471 705 DLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILDK 749 (752)
T ss_pred CCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHHH
Confidence 3 1 1 47899999999654 4333334455666666654
No 88
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.68 E-value=2.8e-15 Score=164.77 Aligned_cols=198 Identities=21% Similarity=0.288 Sum_probs=145.1
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh-CCcEEEEecCCCCCccEEEeCC---HHHHHHH
Q 009323 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKE---PDEFVKL 249 (537)
Q Consensus 174 p~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v~~---~~el~~~ 249 (537)
.+..++.++.||..+|++|+++|||+|++ ..+.+.+++.+....+ +||+||||..|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g--~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFG--DEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 36677899999999999999999999998 6778887777766666 7999999999999999999876 7888888
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeec---------cc----cccc---------c--
Q 009323 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC---------SI----QRRN---------Q-- 305 (537)
Q Consensus 250 ~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~---------~~----~~~~---------~-- 305 (537)
++.+.+. +..++||+||+| +|+++.|+.+ +++....|.- ++ ...+ .
T Consensus 543 l~~A~~~------~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8776543 368999999999 9999998843 5665544321 00 0000 0
Q ss_pred --eeE---------------EEcC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC
Q 009323 306 --KLL---------------EEAP-------------------SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 349 (537)
Q Consensus 306 --~~~---------------~~~p-------------------~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~ 349 (537)
++. ..-| +..+++.+.+...+.|.++++++|+. ++.||+++.+
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 000 0001 12355677788999999999999996 8889999862
Q ss_pred C--------CCEEEEEEecCCCCc-cccchhhcCCCHHHHHHHH
Q 009323 350 R--------GSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 350 ~--------g~~~~lEiNpR~~g~-~~~~~~~~Gidl~~~~i~~ 384 (537)
- ..+.|||+|.+++-. |..-..-.+.|+....++.
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHh
Confidence 1 126799999999654 5444444556666666554
No 89
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.66 E-value=3.9e-14 Score=136.90 Aligned_cols=273 Identities=19% Similarity=0.252 Sum_probs=189.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh--hhccCEEEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEEE
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLH 148 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~--~~~ad~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~d~V~ 148 (537)
+|..+ +..+|..|.+.||+.|+++++++... ...++ ...+|+.+.++ +|.|+ +++.+..++.+ +|+
T Consensus 20 ~Iat~-gSHSaL~Il~GAK~EGF~Ti~v~~~g-r~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~~n--~I~ 89 (361)
T COG1759 20 TIATI-GSHSALQILDGAKEEGFRTIAVCQRG-REKPYEKFPVADEVIIVD------KFSDILNEEIQEELRELN--AIF 89 (361)
T ss_pred EEEEe-ecchHHHHhhhHHhcCCcEEEEEecC-ccchHHhhchhheEEEec------hhHHHhhHHHHHHHHHcC--eEE
Confidence 34444 34679999999999999999998533 33333 44577888764 45443 23445454433 444
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEe
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp 228 (537)
--.|.+......-....+.-+|.+| +...+++-.|...-+.+|+++||+.|.- ..|++++ .-|||||.
T Consensus 90 IP~gSfv~Y~G~d~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~----~~~PeeI-------dr~VIVK~ 157 (361)
T COG1759 90 IPHGSFVAYVGYDGIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKK----YKSPEEI-------DRPVIVKL 157 (361)
T ss_pred ecCCceEEEecchhhhhcccCcccc-cHhHhhhhcchhhHHHHHHHcCCCCCcc----cCChHHc-------CCceEEec
Confidence 3355555554444456667789998 6789999999999999999999999965 5677764 56999999
Q ss_pred cCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhc-CCCcEEEEeccCCCcEEEEEEEEeC-C--CcEEEEeeeecc-cc--
Q 009323 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQNPRHIEFQVLADK-Y--GNVVHFGERDCS-IQ-- 301 (537)
Q Consensus 229 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~-~~~~~lvEe~I~g~~e~~v~v~~d~-~--g~v~~~~~r~~~-~~-- 301 (537)
..--||+|-+++.|.+|+.+..+++...+...- +-.+..+||||-| ..+.+..+... . -+++.+..|-.+ +.
T Consensus 158 pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~ 236 (361)
T COG1759 158 PGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGIDRRYESNLDGL 236 (361)
T ss_pred CCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeeeeheeeccchhh
Confidence 988899999999999999999998876321100 1247899999999 45555544311 1 233333222111 00
Q ss_pred ----cccc---------eeEEEcCCCCCCHHHHHHHHHHHHHHHHHc------CCcceeEEEEEEeCCCCEEEEEEecCC
Q 009323 302 ----RRNQ---------KLLEEAPSPALTPELRKAMGDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRI 362 (537)
Q Consensus 302 ----~~~~---------~~~~~~p~~~l~~~~~~~i~~~a~~i~~al------g~~G~~~vEf~~~~~g~~~~lEiNpR~ 362 (537)
...| .+....|.. +.+.+.+++.+++.+++++. |+.|++++|.++|+|=++|+.|+.+|+
T Consensus 237 ~RlPa~~ql~l~~~ptyvv~Gn~p~v-lRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri 315 (361)
T COG1759 237 VRLPAKDQLELNLEPTYVVVGNIPVV-LRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARI 315 (361)
T ss_pred ccCCHHHHhhcCCCceEEEECCcchh-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEeccc
Confidence 0001 122233554 88899999999999988875 788999999999988889999999999
Q ss_pred CCccccc
Q 009323 363 QVEHPVT 369 (537)
Q Consensus 363 ~g~~~~~ 369 (537)
.|+..+.
T Consensus 316 ~gGTNv~ 322 (361)
T COG1759 316 VGGTNVY 322 (361)
T ss_pred cCCcccc
Confidence 8774433
No 90
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.65 E-value=2.2e-14 Score=144.73 Aligned_cols=226 Identities=16% Similarity=0.199 Sum_probs=152.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CCcccccHHHH
Q 009323 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFV 161 (537)
Q Consensus 83 a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~-~g~~se~~~~a 161 (537)
...++..|++.|+.++.++.+.+-. . ...+|+|+-- .+.........
T Consensus 38 ~~~l~~~~~~~Gi~~v~Id~~~pl~---~-----------------------------qgpfDvilhK~~~~~~~~~~~~ 85 (328)
T PLN02941 38 QPSLEALARSKGIDLVAIDPSRPLS---E-----------------------------QGPFDVILHKLYGKEWRQQLEE 85 (328)
T ss_pred hHHHHHHHHHCCCeEEEecCCCCcc---c-----------------------------cCCcCEEEEecCCHHHHHHHHH
Confidence 4568999999999999995432100 0 0113333321 11000011222
Q ss_pred HHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCC-------CCCCCCcCccCCCHHHHH---HHHHHhCCcEEEEecCC
Q 009323 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG-------VPTVPGSDGLLQSTEEAV---KLADELGFPVMIKATAG 231 (537)
Q Consensus 162 ~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~G-------ipvp~~~~~~~~s~~~~~---~~~~~ig~PvvvKp~~g 231 (537)
...+..|++++ +++++++.+.||..+..+++++| ||+|++ ..+.+.+.+. ...++++||+|+||..|
T Consensus 86 ~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t--~v~~~~~~al~~~~~~~~l~~P~V~KPl~g 162 (328)
T PLN02941 86 YREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQ--LVVYDDESSIPDAVALAGLKFPLVAKPLVA 162 (328)
T ss_pred HHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCE--EEEcCHHHHHHHHHHHhcCCCCEEEeeccc
Confidence 34556688888 78999999999999999999999 999998 6677776533 33468999999999999
Q ss_pred ---CCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC-CcEEEEEEEEeCCCcEEEEeeeecccc--c---
Q 009323 232 ---GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQ--R--- 302 (537)
Q Consensus 232 ---~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g-~~e~~v~v~~d~~g~v~~~~~r~~~~~--~--- 302 (537)
+.|+++.++.+++.|... ...+++||||+. ++.|.|-|++| ++ ....|. +.. +
T Consensus 163 ~Gss~gh~m~lv~~~~~L~~l-------------~~p~~lQEfVnh~g~d~RVfVvGd---~v-~~~~R~-S~~n~~~~~ 224 (328)
T PLN02941 163 DGSAKSHKMSLAYDQEGLSKL-------------EPPLVLQEFVNHGGVLFKVYVVGD---YV-KCVRRF-SLPDVSEEE 224 (328)
T ss_pred CCCccccceEEecCHHHHHhc-------------CCcEEEEEecCCCCEEEEEEEECC---EE-EEEEec-CCccccccc
Confidence 889999999999887751 257999999953 58888888866 33 332331 110 0
Q ss_pred ccc--eeE---------E----Ec-----CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC--CCEEEEEEec
Q 009323 303 RNQ--KLL---------E----EA-----PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER--GSFYFMEMNT 360 (537)
Q Consensus 303 ~~~--~~~---------~----~~-----p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~--g~~~~lEiNp 360 (537)
.+. ... . .. |.. ......+++.++|.++.+++|+ +.+++|++.+.+ ++++++|||.
T Consensus 225 ~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~-~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~~~VidVN~ 302 (328)
T PLN02941 225 LSSAEGVLPFPRVSNAAASADDADNGGLDPEV-AELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDRYYVIDINY 302 (328)
T ss_pred cccccccccccccccccccccccccccccccc-ccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCceEEEEecC
Confidence 000 000 0 00 000 1112345689999999999998 899999999852 3599999999
Q ss_pred CCC
Q 009323 361 RIQ 363 (537)
Q Consensus 361 R~~ 363 (537)
-++
T Consensus 303 fP~ 305 (328)
T PLN02941 303 FPG 305 (328)
T ss_pred CCc
Confidence 884
No 91
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.55 E-value=3.9e-13 Score=134.70 Aligned_cols=205 Identities=17% Similarity=0.138 Sum_probs=125.4
Q ss_pred CCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh--CC-cEEEEecCCCCCccEEEeCCHHH----
Q 009323 173 GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL--GF-PVMIKATAGGGGRGMRLAKEPDE---- 245 (537)
Q Consensus 173 Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i--g~-PvvvKp~~g~gg~Gv~~v~~~~e---- 245 (537)
.++.+...++.||..+..+|+++|||+|++ ..+.+.+...+.+.++ ++ |+|+||..|++|+||.++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T--~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~ 103 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPEL--YGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKDGRYR 103 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCE--EEecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEeccccccc
Confidence 367788889999999999999999999998 3455544332333333 56 69999999999999999976544
Q ss_pred -----------HHHHHHHHHHHHHHhcC-CCcEEEEeccCCC-----------cEEEEEEEEeCCCcEEEEeeeecc---
Q 009323 246 -----------FVKLLQQAKSEAAAAFG-NDGVYLEKYVQNP-----------RHIEFQVLADKYGNVVHFGERDCS--- 299 (537)
Q Consensus 246 -----------l~~~~~~~~~~~~~~~~-~~~~lvEe~I~g~-----------~e~~v~v~~d~~g~v~~~~~r~~~--- 299 (537)
+...+......-....+ ...+++|+++... +.+.|.++.+ +++....|...
T Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~vaa~~R~~~~~~ 180 (317)
T TIGR02291 104 KPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YPVMAMMRLPTRAS 180 (317)
T ss_pred cccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EEEEEEEEccCccC
Confidence 33333322111111111 1245665554432 4566666643 34433333210
Q ss_pred cccccceeE-----------------------EEcCC-----CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCC
Q 009323 300 IQRRNQKLL-----------------------EEAPS-----PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 351 (537)
Q Consensus 300 ~~~~~~~~~-----------------------~~~p~-----~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g 351 (537)
..+.+.... ...|. ..+.....+++.+.|.++.+++|+ |.+.+|++++.++
T Consensus 181 ~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~~~ 259 (317)
T TIGR02291 181 DGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDKEE 259 (317)
T ss_pred CcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCCC
Confidence 111111000 00111 012335667899999999999998 9999999998665
Q ss_pred CEEEEEEecCCCCccccchhhcCCCHHHHHHHH
Q 009323 352 SFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (537)
Q Consensus 352 ~~~~lEiNpR~~g~~~~~~~~~Gidl~~~~i~~ 384 (537)
.++++|+|+.++-+ +......|++---..+..
T Consensus 260 g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~~~ 291 (317)
T TIGR02291 260 GPLVLELNARPGLA-IQIANGAGLLPRLKHIEA 291 (317)
T ss_pred CEEEEEeCCCCCCC-HHHHHHCCCcHHHHHHHH
Confidence 69999999999655 233334566554444444
No 92
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.20 E-value=7.5e-10 Score=109.60 Aligned_cols=185 Identities=19% Similarity=0.291 Sum_probs=122.3
Q ss_pred HHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCC-CC--CCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEe
Q 009323 164 CREHGINFIGPNPDSIRIMGDKSTARETMKNAG-VP--TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLA 240 (537)
Q Consensus 164 ~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~G-ip--vp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v 240 (537)
-+..|++|+++ .+.||+...+.|.+.. +. .|++ ....+.+++.+++++.+ -|+|||..|+.|+||..+
T Consensus 4 k~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T--~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 4 KKQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPET--ELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred HhcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCc--eEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence 35678999865 4589999999998853 33 6777 67888999999998876 599999999999998876
Q ss_pred C----------------------CHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC----CcE--EEEEEEEeCCCcE--
Q 009323 241 K----------------------EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN----PRH--IEFQVLADKYGNV-- 290 (537)
Q Consensus 241 ~----------------------~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g----~~e--~~v~v~~d~~g~v-- 290 (537)
. +.+++...+... .+...+|||+.|+= .+. +.|.+..++.|.-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~v 147 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQV 147 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEE
Confidence 3 335555555443 23569999999873 244 4444555666643
Q ss_pred EEEeeeecc---cccccceeEEEcCC-CCC-----CHHHHHHHHHHHHHHHHHc----CC-cceeEEEEEEeCCCCEEEE
Q 009323 291 VHFGERDCS---IQRRNQKLLEEAPS-PAL-----TPELRKAMGDAAVAAAASI----GY-IGVGTVEFLLDERGSFYFM 356 (537)
Q Consensus 291 ~~~~~r~~~---~~~~~~~~~~~~p~-~~l-----~~~~~~~i~~~a~~i~~al----g~-~G~~~vEf~~~~~g~~~~l 356 (537)
.....|... +..+...-....+. ..+ .....++|.+.+..+++.+ |. -|-..+|+-+|.+|++++|
T Consensus 148 tg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWli 227 (262)
T PF14398_consen 148 TGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLI 227 (262)
T ss_pred EEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEE
Confidence 333333211 11111001111110 011 2335666777777766655 55 3778899999999999999
Q ss_pred EEecCCCC
Q 009323 357 EMNTRIQV 364 (537)
Q Consensus 357 EiNpR~~g 364 (537)
|+|++++-
T Consensus 228 EvN~kP~~ 235 (262)
T PF14398_consen 228 EVNSKPGK 235 (262)
T ss_pred EEeCCCCc
Confidence 99999853
No 93
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.14 E-value=3.2e-09 Score=111.37 Aligned_cols=174 Identities=21% Similarity=0.313 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhC-CcEEEEec--CCC-C-CccEEEeCCHHHHHHHHHHHHHHHH
Q 009323 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKAT--AGG-G-GRGMRLAKEPDEFVKLLQQAKSEAA 258 (537)
Q Consensus 184 dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig-~PvvvKp~--~g~-g-g~Gv~~v~~~~el~~~~~~~~~~~~ 258 (537)
+.+.+|++|+++|||+|++ ..+.+.+++.++++++| ||+|+||. .|+ | +-||+++.+.+|+.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~--~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRG--YVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 4678899999999999998 67899999999999999 99999997 222 2 2389999999999999988764211
Q ss_pred Hh--c---C--CCcEEEEeccCCCcEEEEEEEEeC--CCcEEEEeeee-cc---cccc-cc--eeEEEcCCC--------
Q 009323 259 AA--F---G--NDGVYLEKYVQNPRHIEFQVLADK--YGNVVHFGERD-CS---IQRR-NQ--KLLEEAPSP-------- 314 (537)
Q Consensus 259 ~~--~---~--~~~~lvEe~I~g~~e~~v~v~~d~--~g~v~~~~~r~-~~---~~~~-~~--~~~~~~p~~-------- 314 (537)
.. . + -..++||+|+++.+|+.+.++.|+ .|.++.++... .. +... .. ......|..
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~ 161 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAR 161 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHH
Confidence 00 0 1 136999999995599999999986 34555554210 00 0000 01 122222211
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCcceeEEE---EEEeCCCCEEEEEEe
Q 009323 315 ------ALTPELRKAMGDAAVAAAASIGYIGVGTVE---FLLDERGSFYFMEMN 359 (537)
Q Consensus 315 ------~l~~~~~~~i~~~a~~i~~alg~~G~~~vE---f~~~~~g~~~~lEiN 359 (537)
.++....+++.+.+.++.+.+.-..+..+| ++++++|+++.+..-
T Consensus 162 ~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Dak 215 (386)
T TIGR01016 162 EIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAK 215 (386)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeee
Confidence 145566677777888877776543455555 345555555554443
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.13 E-value=3.1e-09 Score=111.54 Aligned_cols=109 Identities=29% Similarity=0.411 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh-CCcEEEEecCCCCCc----cEEEeCCHHHHHHHHHHHHHHHH
Q 009323 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEAA 258 (537)
Q Consensus 184 dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i-g~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~~~~~~~~ 258 (537)
+++.+|++|+++|||+|++ ..+.+.+++.++++++ |||+|+||....+|+ ||.+..+.+++.++++++.....
T Consensus 4 ~e~~ak~lL~~~gIpvp~~--~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRG--IVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCC--eeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 6788999999999999998 7899999999999999 999999997654554 89999999999999988874321
Q ss_pred ---Hh--cC--CCcEEEEeccCCCcEEEEEEEEeC-CCcEEEEe
Q 009323 259 ---AA--FG--NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 294 (537)
Q Consensus 259 ---~~--~~--~~~~lvEe~I~g~~e~~v~v~~d~-~g~v~~~~ 294 (537)
.. .+ ...++||+++++.+|+.+.+..|+ .|.++.++
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 00 01 126999999996699999999986 46766543
No 95
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=99.08 E-value=9.6e-09 Score=102.90 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=125.8
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC-------c--cCCCHHHHHHHHHHh-CCcEEEEecCCCCCccEEEeCCH
Q 009323 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSD-------G--LLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEP 243 (537)
Q Consensus 174 p~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~-------~--~~~s~~~~~~~~~~i-g~PvvvKp~~g~gg~Gv~~v~~~ 243 (537)
++.+...++.||..+++++.+.|||+|+... . ...+.+++.+++... ..++|+||..|++|+|+.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 5778889999999999999999999999311 0 134678888888764 57999999999999999998765
Q ss_pred HH------HHHHHHHHHHHHHHhcCCCcEEEEeccCCC-----------cEEEEEEEEeCCCcEEEE--eeee---ccc-
Q 009323 244 DE------FVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-----------RHIEFQVLADKYGNVVHF--GERD---CSI- 300 (537)
Q Consensus 244 ~e------l~~~~~~~~~~~~~~~~~~~~lvEe~I~g~-----------~e~~v~v~~d~~g~v~~~--~~r~---~~~- 300 (537)
+. .......+.. .....+++|++|.-. .-+.+..+.+. +.+..+ .-|- ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~-----~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~ 169 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-----LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGV 169 (285)
T ss_pred cCcccccchhHHHHHHHh-----cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcc
Confidence 51 2222221111 111289999998751 23455555554 443222 1110 000
Q ss_pred c-----------------------cccceeEEEcCCCC-----CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCC
Q 009323 301 Q-----------------------RRNQKLLEEAPSPA-----LTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGS 352 (537)
Q Consensus 301 ~-----------------------~~~~~~~~~~p~~~-----l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~ 352 (537)
. .......+.-|... +.-...+++.+.+.++.+.+...+....|+.+|++|
T Consensus 170 DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G- 248 (285)
T PF14397_consen 170 DNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG- 248 (285)
T ss_pred cccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-
Confidence 0 00111112223211 122456788899999998888779999999999999
Q ss_pred EEEEEEecCCCCccccchhhcCCCHH
Q 009323 353 FYFMEMNTRIQVEHPVTEMISSVDLI 378 (537)
Q Consensus 353 ~~~lEiNpR~~g~~~~~~~~~Gidl~ 378 (537)
+++||.|.+.+.+..+. .++|.-+.
T Consensus 249 p~llE~N~~~~pgl~~~-~~~g~gl~ 273 (285)
T PF14397_consen 249 PVLLEGNARWDPGLMIQ-IANGPGLF 273 (285)
T ss_pred cEEEEeeCCCCCCcHhh-hccCcchH
Confidence 99999999953333322 34444333
No 96
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.83 E-value=3.7e-08 Score=94.55 Aligned_cols=174 Identities=26% Similarity=0.367 Sum_probs=99.0
Q ss_pred cCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCC-----CCccEEE-eCCHHHHHHHHHHHHHH
Q 009323 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-----GGRGMRL-AKEPDEFVKLLQQAKSE 256 (537)
Q Consensus 183 ~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~-----gg~Gv~~-v~~~~el~~~~~~~~~~ 256 (537)
-+-...+++|+.+|||+|++ ..+.|.+++.++++++|||+++|-..-. ---||.+ ++++++++++++++...
T Consensus 10 L~e~e~~~lL~~yGI~~~~~--~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~ 87 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPT--RLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRER 87 (222)
T ss_dssp E-HHHHHHHHHTTT--------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCe--eEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHH
Confidence 35677899999999999999 7899999999999999999999997644 2236777 89999999999999877
Q ss_pred HHHhcC---CCcEEEEeccC-CCcEEEEEEEEeC-CCcEEEEeeeecccccccceeEEEcCCCCCCHHHHHHHHHHHHHH
Q 009323 257 AAAAFG---NDGVYLEKYVQ-NPRHIEFQVLADK-YGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAA 331 (537)
Q Consensus 257 ~~~~~~---~~~~lvEe~I~-g~~e~~v~v~~d~-~g~v~~~~~r~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i 331 (537)
.....+ ...++||+.++ +..|+.+.+..|. .|.++.++.-.....-.. -.....+| ++.....+|.+..+..
T Consensus 88 ~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~GG~~vE~~~--D~~~~l~P-l~~~~a~~mi~~l~~~ 164 (222)
T PF13549_consen 88 VAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGLGGIFVELLK--DVAFRLPP-LSEADAREMIRELRAY 164 (222)
T ss_dssp HHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE-STTHHHH-----EEEESS---HHHHHHHHHTSTTH
T ss_pred HHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcCCCceeeeec--ceEEeeCC-CCHHHHHHHHHHHHhH
Confidence 654333 35899999999 5599999999986 588888865432111111 11223333 6666555554443322
Q ss_pred HHHcCCcceeEEE-------------EEEeCCCCEEEEEEecCC
Q 009323 332 AASIGYIGVGTVE-------------FLLDERGSFYFMEMNTRI 362 (537)
Q Consensus 332 ~~alg~~G~~~vE-------------f~~~~~g~~~~lEiNpR~ 362 (537)
--.-|++|.-..| +..+ ..++.=+|+||=+
T Consensus 165 ~lL~G~RG~p~~d~~al~~~l~~ls~l~~~-~p~I~eldiNPl~ 207 (222)
T PF13549_consen 165 PLLRGYRGRPPADLDALADLLVRLSQLAAD-LPEIAELDINPLI 207 (222)
T ss_dssp HHHH-------B-HHHHHHHHHHHHHHHHH-TTTEEEEEEEEEE
T ss_pred HhhcccCCCCCcCHHHHHHHHHHHHHHHHh-CCCEEEEEeeceE
Confidence 2223555542222 2222 3447778888755
No 97
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.80 E-value=4.6e-08 Score=98.47 Aligned_cols=107 Identities=29% Similarity=0.414 Sum_probs=85.2
Q ss_pred HHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhC-CcEEEEecCCCCCc----cEEEeCCHHHHHHHHHHHHH----
Q 009323 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKS---- 255 (537)
Q Consensus 185 K~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~~~~~---- 255 (537)
-++.|++|+++|||+|++ ..+.+.+++.++++++| .|+|+|+---.||+ ||++++|.+|+.++.+++..
T Consensus 5 EYqaKelf~~~GiPvp~g--~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPG--YVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCc--eeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 468899999999999999 78999999999999998 79999996655554 59999999999999998875
Q ss_pred HHHHhcCCCcEEEEeccC-CCcEEEEEEEEeCCCcEEEE
Q 009323 256 EAAAAFGNDGVYLEKYVQ-NPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 256 ~~~~~~~~~~~lvEe~I~-g~~e~~v~v~~d~~g~v~~~ 293 (537)
.....-.-..++||++++ -.+|+-+.++.|+..+...+
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 211111125899999999 43499999998876544433
No 98
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.72 E-value=3.6e-08 Score=93.17 Aligned_cols=103 Identities=27% Similarity=0.410 Sum_probs=74.4
Q ss_pred HHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCc-EEEEecCCCCCcc----EEEeCCHHHHHHHHHHHHHHHHH
Q 009323 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLLQQAKSEAAA 259 (537)
Q Consensus 185 K~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~P-vvvKp~~g~gg~G----v~~v~~~~el~~~~~~~~~~~~~ 259 (537)
-+..+++|+++|||+|++ ..+.+.+++.++++.+|.+ +||||---.||+| |.+++|++|+.++..++......
T Consensus 4 EyqaK~ll~~~gi~vp~g--~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRG--VVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SE--EEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467899999999999999 7899999999999999975 7999976666554 99999999999998876532110
Q ss_pred -------hcCCCcEEEEeccCCCcEEEEEEEEeCCCc
Q 009323 260 -------AFGNDGVYLEKYVQNPRHIEFQVLADKYGN 289 (537)
Q Consensus 260 -------~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~ 289 (537)
...-..++||++++-.+|+-+.+..|+...
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR 118 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence 001247899999999889999999887643
No 99
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.61 E-value=3e-06 Score=88.68 Aligned_cols=108 Identities=24% Similarity=0.253 Sum_probs=86.2
Q ss_pred HHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCc-EEEEecCCCC----CccEEEeCCHHHHHHHHHHHHHHHH-
Q 009323 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGG----GRGMRLAKEPDEFVKLLQQAKSEAA- 258 (537)
Q Consensus 185 K~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~P-vvvKp~~g~g----g~Gv~~v~~~~el~~~~~~~~~~~~- 258 (537)
-+..|++|+++|||+|++ ..+.+.+++.++++++||| +|+|+..-.| +-||.+..|.+|+.++++++.....
T Consensus 5 E~eak~lL~~yGIpvp~~--~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRG--ALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCc--eEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 467789999999999999 7899999999999999995 5999743222 3468899999999999999876421
Q ss_pred -H-h----cCCCcEEEEeccCCCcEEEEEEEEeC-CCcEEEEe
Q 009323 259 -A-A----FGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 294 (537)
Q Consensus 259 -~-~----~~~~~~lvEe~I~g~~e~~v~v~~d~-~g~v~~~~ 294 (537)
. . ..-..++||+++++.+|+.+.+..|+ .|.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 1 0 11247999999998899999999986 57777664
No 100
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.60 E-value=2.2e-07 Score=85.57 Aligned_cols=145 Identities=19% Similarity=0.241 Sum_probs=77.2
Q ss_pred CCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCc-
Q 009323 199 TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR- 276 (537)
Q Consensus 199 vp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~- 276 (537)
+|++ ....|.+++.+|.++.+. +|+||..|.||+||+++... ..+...++.+... +...+++|+||+.-+
T Consensus 12 ~P~T--~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-----~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPT--LVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-----GERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--E--EEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-----TTS-EEEEE--GGGGG
T ss_pred CcCE--EEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-----CCccEEEEeccccccC
Confidence 4666 567789999999999998 99999999999999999874 4455555544322 245799999999733
Q ss_pred -EEEEEEEEeCCCcEEEEeeeecc--cccccceeEE-EcCCCCCCHHHHHHHHHHHHHHHHHcCCcc--eeEEEEEEeCC
Q 009323 277 -HIEFQVLADKYGNVVHFGERDCS--IQRRNQKLLE-EAPSPALTPELRKAMGDAAVAAAASIGYIG--VGTVEFLLDER 350 (537)
Q Consensus 277 -e~~v~v~~d~~g~v~~~~~r~~~--~~~~~~~~~~-~~p~~~l~~~~~~~i~~~a~~i~~alg~~G--~~~vEf~~~~~ 350 (537)
|.++.++ +|+.++...|.-. -.|.+...+. ..+. .++++.+ +++.++...|.-.| +..+|++
T Consensus 84 GDkRii~~---nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~-~lt~~e~----~i~~~i~~~L~~~Gl~f~GiDvi---- 151 (173)
T PF02955_consen 84 GDKRIILF---NGEPSHAVRRIPAKGDFRSNLAAGGSAEPA-ELTERER----EICEQIGPKLREDGLLFVGIDVI---- 151 (173)
T ss_dssp -EEEEEEE---TTEE-SEEEEE--SS-S---GGGTSCEEEE-E--HHHH----HHHHHHHHHHHHTT--EEEEEEE----
T ss_pred CCEEEEEE---CCEEhHHeecCCCCCCceeeeccCCceeec-CCCHHHH----HHHHHHHHHHhhcCcEEEEEecc----
Confidence 6666666 4566554333211 1111111111 1112 1454443 44444444443333 5668887
Q ss_pred CCEEEEEEecCCCC
Q 009323 351 GSFYFMEMNTRIQV 364 (537)
Q Consensus 351 g~~~~lEiNpR~~g 364 (537)
| -|++|||.-=++
T Consensus 152 g-~~l~EiNvtsp~ 164 (173)
T PF02955_consen 152 G-DKLTEINVTSPT 164 (173)
T ss_dssp T-TEEEEEE-SS--
T ss_pred c-cceEEEeccCch
Confidence 3 389999986443
No 101
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.51 E-value=4.9e-06 Score=87.31 Aligned_cols=105 Identities=24% Similarity=0.338 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHh---CCcEEEEec--CCCCC---------ccEEEeCCHHHHHHH
Q 009323 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL---GFPVMIKAT--AGGGG---------RGMRLAKEPDEFVKL 249 (537)
Q Consensus 184 dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~i---g~PvvvKp~--~g~gg---------~Gv~~v~~~~el~~~ 249 (537)
.-+..+++|+++|||+|++ ..+.+.+++.+.++++ ++|+|+|+. .|+-| -||.++++ +|+.++
T Consensus 31 ~EyqaK~LL~~~GIpvp~~--~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~a 107 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKG--AAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEEL 107 (422)
T ss_pred CHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHH
Confidence 5678899999999999999 7899999999999999 699999998 44433 34667766 999999
Q ss_pred HHHHHHHHH--Hh-----cCCCcEEEEeccCCCcEEEEEEEEeCC--CcEE
Q 009323 250 LQQAKSEAA--AA-----FGNDGVYLEKYVQNPRHIEFQVLADKY--GNVV 291 (537)
Q Consensus 250 ~~~~~~~~~--~~-----~~~~~~lvEe~I~g~~e~~v~v~~d~~--g~v~ 291 (537)
++++..... .. ..-..++|||.+...+|+-+.+..|+. |.++
T Consensus 108 a~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 108 AGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred HHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 998865411 10 012357867766666899999999963 4555
No 102
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.35 E-value=2.4e-05 Score=81.25 Aligned_cols=107 Identities=14% Similarity=0.248 Sum_probs=84.4
Q ss_pred HHHHHHHHHHC-----CCCCCCCcCccC-CCHHHHHHHHHH---hCCc-EEEEecCCCCCcc----EEEeCCHHHHHHHH
Q 009323 185 KSTARETMKNA-----GVPTVPGSDGLL-QSTEEAVKLADE---LGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLL 250 (537)
Q Consensus 185 K~~~r~~l~~~-----Gipvp~~~~~~~-~s~~~~~~~~~~---ig~P-vvvKp~~g~gg~G----v~~v~~~~el~~~~ 250 (537)
-+..|++|+++ |||+|.+ ..+ .+.+++.+++++ ++.| +||||.--.||+| |.+++|++|+.++.
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~--~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a 85 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIR--SAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV 85 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCC--eeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence 35678888887 9999998 556 899999999988 7775 6999987777765 99999999999999
Q ss_pred HHHHHHHHHhc----CCCcEEEEeccCCCcEEEEEEEEeCCCcEEEE
Q 009323 251 QQAKSEAAAAF----GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 251 ~~~~~~~~~~~----~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~ 293 (537)
+++......-. .-..++||++++-.+|+-+.++.|+....+.+
T Consensus 86 ~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~ 132 (423)
T PLN02235 86 KERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISF 132 (423)
T ss_pred HHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEE
Confidence 98865431000 12378999999988999999999887665433
No 103
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.16 E-value=5.7e-05 Score=69.39 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=99.7
Q ss_pred CCHHHHHHhcCHHHHHHHH----HHC---CCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHH
Q 009323 174 PNPDSIRIMGDKSTARETM----KNA---GVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEF 246 (537)
Q Consensus 174 p~~~~i~~~~dK~~~r~~l----~~~---Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el 246 (537)
+|.+++-.+.||.+....| +++ .+|..+. ....+..+. .....||+|||--.+.+|.|-.++++..++
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQ--t~ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~ 75 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQ--TYYPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDF 75 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B-----EEESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCccccccee--eecCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHH
Confidence 4677888899998765544 334 3555443 223333332 233579999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecc--c-ccccceeEEEcCCCCCCHHHHHH
Q 009323 247 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--I-QRRNQKLLEEAPSPALTPELRKA 323 (537)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~--~-~~~~~~~~~~~p~~~l~~~~~~~ 323 (537)
.+...-+... +.-+.+|+||+-..++.+|-+++ +...+..+.-+ + .+.....++.-+ +++ +
T Consensus 76 qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~---~ykA~~R~sis~nWK~N~gsa~lEqi~---~~~----r 139 (203)
T PF02750_consen 76 QDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKANTGSAMLEQIA---MTE----R 139 (203)
T ss_dssp HHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT---EEEEEEEEESSSTSSTTSSSEEEEEE------H----H
T ss_pred HHHHHHHHhc------CceEEeeccccceeEEEEEEEcC---eEEEEEEccccccccccccchheeecC---CCh----H
Confidence 8766554432 47889999998867888887754 34444332111 1 122223333333 233 4
Q ss_pred HHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecC
Q 009323 324 MGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 361 (537)
Q Consensus 324 i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR 361 (537)
...++..+.+.+|---++.+|.+..+||+-|++|+|--
T Consensus 140 yk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds 177 (203)
T PF02750_consen 140 YKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDS 177 (203)
T ss_dssp HHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-T
T ss_pred HHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCC
Confidence 44677777888865578999999999999999999953
No 104
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=98.16 E-value=8.2e-05 Score=72.61 Aligned_cols=179 Identities=14% Similarity=0.134 Sum_probs=109.4
Q ss_pred HHHHHhcCHHHHHHHHHHCC--CCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHH
Q 009323 177 DSIRIMGDKSTARETMKNAG--VPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 254 (537)
Q Consensus 177 ~~i~~~~dK~~~r~~l~~~G--ipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~ 254 (537)
..+..+.||...|+.+++.+ ...||.. ...++.+++. .+.+.-++||||..|+|+..+..-.+.-+...+...+.
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~ 89 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLN 89 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHH
Confidence 34567889999999999875 3445543 4566666652 24567889999999999888887665444444333332
Q ss_pred HHHHHhcC-----------CCcEEEEeccCCC-----cEEEEEEEEeCCCcEEEEeeeec-------cccccc---ceeE
Q 009323 255 SEAAAAFG-----------NDGVYLEKYVQNP-----RHIEFQVLADKYGNVVHFGERDC-------SIQRRN---QKLL 308 (537)
Q Consensus 255 ~~~~~~~~-----------~~~~lvEe~I~g~-----~e~~v~v~~d~~g~v~~~~~r~~-------~~~~~~---~~~~ 308 (537)
.-....+. ...+++|++|... .+|-+-++ +|++..+....- .+.... ....
T Consensus 90 ~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~ 166 (239)
T PF14305_consen 90 RWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFR 166 (239)
T ss_pred HHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE---CCEEEEEEEEeCCCCCeEEEEECcccCCCccc
Confidence 11111111 2589999999862 35666665 344443321100 000000 0010
Q ss_pred EEc--CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEecCCCCc
Q 009323 309 EEA--PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (537)
Q Consensus 309 ~~~--p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNpR~~g~ 365 (537)
... ......+...++|.++|+++.+.+. ...|||...++ ++||-|+...++++
T Consensus 167 ~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~~~-~iyFGElTf~p~~G 221 (239)
T PF14305_consen 167 SDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNVDG-KIYFGELTFTPGAG 221 (239)
T ss_pred cCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEeCC-cEEEEeeecCCCCc
Confidence 011 1112346677889999988887755 46899987754 59999999999776
No 105
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.16 E-value=1.6e-05 Score=79.55 Aligned_cols=174 Identities=17% Similarity=0.267 Sum_probs=105.2
Q ss_pred CCceeCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCccCC-CHHHHHHHH--HHhCCcEEEEecCCC---CC
Q 009323 168 GINFIGPNPDSIRIMGDKSTARETMKNA-------GVPTVPGSDGLLQ-STEEAVKLA--DELGFPVMIKATAGG---GG 234 (537)
Q Consensus 168 gi~~~Gp~~~~i~~~~dK~~~r~~l~~~-------Gipvp~~~~~~~~-s~~~~~~~~--~~ig~PvvvKp~~g~---gg 234 (537)
.+.++ -++++++.+.|+..+.+++++. .+.+|++ ..+. +.+++.+.. +.+.||+|+||.... .+
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~--v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 154 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKF--VVINSDAESLPELLKEAGLKFPLICKPLVACGSADS 154 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-E--EEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCce--EEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence 46666 5789999999999999988874 6778887 4444 444444444 356799999997644 56
Q ss_pred ccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC-CcEEEEEEEEeCCCcEEEEeeeec----cccc--cccee
Q 009323 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDC----SIQR--RNQKL 307 (537)
Q Consensus 235 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g-~~e~~v~v~~d~~g~v~~~~~r~~----~~~~--~~~~~ 307 (537)
..|.++.+++.|.+. ..++++||||.- +.-|-|-|++|. +++..|.. +... .....
T Consensus 155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~----v~~v~R~SLpn~~~~~~~~~~~~ 217 (307)
T PF05770_consen 155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDK----VFVVKRPSLPNVSSGKLDREEIF 217 (307)
T ss_dssp CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTE----EEEEEEE------SSS-TCGGCC
T ss_pred eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCE----EEEEECCCCCCCCcccccccccc
Confidence 779999999998752 268999999985 466777776542 23323211 0000 00000
Q ss_pred EEE---------------c--CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe-CC-CCEEEEEEecCCC
Q 009323 308 LEE---------------A--PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ER-GSFYFMEMNTRIQ 363 (537)
Q Consensus 308 ~~~---------------~--p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~-~~-g~~~~lEiNpR~~ 363 (537)
... . +.. ....-.+.+.++|..+-++||+ ..+++|++++ .+ |++|+|.||.=++
T Consensus 218 f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 218 FDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYYVIDINYFPG 290 (307)
T ss_dssp CEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEEEEEEEES--
T ss_pred eeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEEEEEeccCCC
Confidence 000 0 111 1112245678888889999999 7888999998 56 7899999999763
No 106
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=98.03 E-value=4.1e-05 Score=63.48 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=64.6
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCC--CEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~--~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|||||+|+|..-..++.++++.-. ++++. ..++.. ..+ .+.+.+ +..|.+.++++|++.++|.|+.
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~a--PGN~G~--~~~-~~~~~~-------~~~d~~~l~~~a~~~~idlvvv 68 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVA--PGNPGT--AEL-GKNVPI-------DITDPEELADFAKENKIDLVVV 68 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEE--E--TTG--GGT-SEEE-S--------TT-HHHHHHHHHHTTESEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEe--CCCHHH--Hhh-ceecCC-------CCCCHHHHHHHHHHcCCCEEEE
Confidence 589999999999999999988643 33333 222221 122 233433 3678999999999999999998
Q ss_pred CCCcccccH---HHHHHHHHCCCceeCCCHHHHHH
Q 009323 150 GYGFLAENA---VFVEMCREHGINFIGPNPDSIRI 181 (537)
Q Consensus 150 ~~g~~se~~---~~a~~~e~~gi~~~Gp~~~~i~~ 181 (537)
|. |.+ .+++.+++.|++++||+.++.++
T Consensus 69 GP----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 69 GP----EAPLVAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp SS----HHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred CC----hHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence 76 443 56788999999999999887764
No 107
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.61 E-value=0.00036 Score=70.44 Aligned_cols=55 Identities=24% Similarity=0.490 Sum_probs=29.9
Q ss_pred cEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC-----Cc--EEEEEEEEeC
Q 009323 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-----PR--HIEFQVLADK 286 (537)
Q Consensus 223 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g-----~~--e~~v~v~~d~ 286 (537)
-+|+||..++.|+|+.++++.+++... .......++||+||+. ++ ++.+-|+...
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts 128 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTS 128 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEee
Confidence 489999999999999999999988854 0123579999999975 24 5555555543
No 108
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.54 E-value=0.00014 Score=61.87 Aligned_cols=113 Identities=16% Similarity=0.274 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHcCCCEEEEecCCCCCChh--hhccCEEEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCccc
Q 009323 80 GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLA 155 (537)
Q Consensus 80 g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~--~~~ad~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~d~V~p~~g~~s 155 (537)
..+|+.|.+-||+.|++|++++.... ..++ ..++|+.+.++ +|.++ +.+.+..++. ++|+--+|.+.
T Consensus 6 SHSALqIl~GAk~EGFrT~~ic~~~r-~~~Y~~f~~iDe~i~~d------~f~di~~~~~q~~L~~~--N~I~VPhgSfv 76 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTIAICQKGR-EKFYRRFPFIDEVIVLD------SFSDILSEEVQEKLREM--NAIFVPHGSFV 76 (124)
T ss_dssp STTHHHHHHHHHHTT--EEEEEETTC-HHHHHTTTT-SEEEEES------SCGHCCSHHHHHHHHHT--TEEE--BTTHH
T ss_pred chHHHHHhhhHHHcCCcEEEEECCCC-cchhhhcCcCcEEEEeC------CHHHHHhHHHHHHHHHC--CeEEecCCCee
Confidence 45789999999999999999975433 2222 34789999875 34332 2555555553 45555466666
Q ss_pred ccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 156 ENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 156 e~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
+....-..-.+..+|++| +...++.-.|...-+.+|+++|||.|..
T Consensus 77 ~Y~G~d~ie~~~~vP~FG-NR~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 77 AYVGYDRIENEFKVPIFG-NRNLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp HHH-HHHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred EeecHHHHhhcCCCCeec-ChHHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 665544444448899999 4677888889999999999999999975
No 109
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00055 Score=67.83 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=123.5
Q ss_pred HHcCCCEEEeCCCc----cccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHH----HCC---CCCCCCcCccC
Q 009323 140 ISRGCTMLHPGYGF----LAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK----NAG---VPTVPGSDGLL 207 (537)
Q Consensus 140 ~~~~~d~V~p~~g~----~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~----~~G---ipvp~~~~~~~ 207 (537)
+....|+|+-+-+. +.|+ -.+...+...||+++ ++...+..+.||.+...-|. ..| +|..+.. ..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt--~y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQT--FY 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceee--ec
Confidence 45668888876432 1222 234455677899998 79999999999987766554 455 5555442 12
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCC
Q 009323 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (537)
Q Consensus 208 ~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~ 287 (537)
-+-. .....-.||+|||--.+..|.|-.+|+|.+|+.+.-..+. .. ....-+|.||+.-.++.+|-++..+
T Consensus 229 PnHK---~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svva-l~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 229 PNHK---EMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVA-LT-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred CCch---hhccCCCCcEEEEecccccccceeeecchhhhHhHHHHHH-HH-----hhhhhccccccccceeehhhhhhhH
Confidence 2211 1223345999999999999999999999998876543322 11 2567889999986678888776533
Q ss_pred CcEEEEeeeecccccccceeEEEcCCCCCCHHHHH------HHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEec
Q 009323 288 GNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRK------AMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNT 360 (537)
Q Consensus 288 g~v~~~~~r~~~~~~~~~~~~~~~p~~~l~~~~~~------~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEiNp 360 (537)
+ .+..+. +. .+.|. . ......+ +-.-++..+.+.+|---++.|+.+..+||+=|++|||-
T Consensus 300 -K--aymRts--Is-gnWKt------N-tGSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d 365 (488)
T KOG3895|consen 300 -K--AYMRTS--IS-GNWKT------N-TGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMD 365 (488)
T ss_pred -H--HHhhhh--hc-cCccc------C-chHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecc
Confidence 1 111110 00 01110 0 1112222 22334445555667667889999999999999999986
No 110
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.46 E-value=0.0013 Score=59.86 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=62.7
Q ss_pred CcEEEEeccCCCcEEEEEEEEeC-CCcE--EEEeeeecc-c---cccc-----------c-eeEEEcCCCCCCHHHHHHH
Q 009323 264 DGVYLEKYVQNPRHIEFQVLADK-YGNV--VHFGERDCS-I---QRRN-----------Q-KLLEEAPSPALTPELRKAM 324 (537)
Q Consensus 264 ~~~lvEe~I~g~~e~~v~v~~d~-~g~v--~~~~~r~~~-~---~~~~-----------~-~~~~~~p~~~l~~~~~~~i 324 (537)
.+..+||||-| .++.+..+... .+++ +.+..|-.+ + .+-. . -+....|.. +.+.+.+++
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESLLPKV 98 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGGHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhhHHHH
Confidence 68999999999 67777766533 2222 222222211 0 0000 0 122334554 788899999
Q ss_pred HHHHHHHHHHc------CCcceeEEEEEEeCCCCEEEEEEecCCCCccc
Q 009323 325 GDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHP 367 (537)
Q Consensus 325 ~~~a~~i~~al------g~~G~~~vEf~~~~~g~~~~lEiNpR~~g~~~ 367 (537)
.+++.+++++. |+.|++++|.++|++.++++.|+.+|+.|+..
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gGTN 147 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGGTN 147 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GGGG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCCCC
Confidence 99999888775 78899999999999999999999999987633
No 111
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.99 E-value=0.0064 Score=64.08 Aligned_cols=174 Identities=19% Similarity=0.253 Sum_probs=102.2
Q ss_pred CcEEEEEcCcHH-----HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009323 71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 71 ~~kvLi~g~g~~-----a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 145 (537)
..+|.|+.--+. =..+.+...++|+++++++.. ..++.|...+.+ -.-++.|-+.+...
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~------~L~y~~g~L~~~-------~~~ID~VyRR~Vt~--- 248 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPR------DLEYRDGRLYAG-------GRPIDAVYRRFVTS--- 248 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHcCCceEecChH------HceecCCEEEEC-------CEeeehhhHhhhhH---
Confidence 457777763222 245778888999999998422 133445555432 11223333333221
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCC-------------CCCCcCccCCC---
Q 009323 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP-------------TVPGSDGLLQS--- 209 (537)
Q Consensus 146 ~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gip-------------vp~~~~~~~~s--- 209 (537)
=+++.++ +...+.++...--+.++| +-...+++||..+.-+-.+..-. +|-+ ..++.
T Consensus 249 e~l~~~d---~~~~li~Ay~~~av~~vg--sfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T--~~l~~~~~ 321 (445)
T PF14403_consen 249 ELLERYD---EVQPLIQAYRDGAVCMVG--SFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWT--RLLTAGRT 321 (445)
T ss_pred Hhhhccc---cchHHHHHHhcCCeEEec--chhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCce--EEEcCccc
Confidence 1122222 334455666555566664 45566777887766443332211 2323 23332
Q ss_pred -----HHHHHHHHHHhCCcEEEEecCCCCCccEEE--eCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCC
Q 009323 210 -----TEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 275 (537)
Q Consensus 210 -----~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~--v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~ 275 (537)
.-++.+++...---+|+||.++.||+||.+ =.++++.+++++++. ++++++|||+.-.
T Consensus 322 ~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~~ 386 (445)
T PF14403_consen 322 TYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVRPP 386 (445)
T ss_pred cccccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEecCC
Confidence 334555544444568999999999999998 456788888888764 3699999999873
No 112
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.51 E-value=0.044 Score=48.19 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=72.6
Q ss_pred CcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEeeeecccc
Q 009323 222 FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301 (537)
Q Consensus 222 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~ 301 (537)
-|+.|||....-.---.++.+.+++...- ...++..+++.+.++-..|+.+-++ +|+++......
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~Y~---- 66 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSPYR---- 66 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEE---CCEEEEEeecC----
Confidence 48999999866444444566666554111 1123579999999998789999887 56777664321
Q ss_pred cccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcC-CcceeEEEEEEeCCCCEEEEEEecCC
Q 009323 302 RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIG-YIGVGTVEFLLDERGSFYFMEMNTRI 362 (537)
Q Consensus 302 ~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg-~~G~~~vEf~~~~~g~~~~lEiNpR~ 362 (537)
. ......+. ++.+.+.+.+++.. ..-.+.+|+-++++|+++++|+|+=-
T Consensus 67 -~-------~~~~~~~~----~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~ 116 (130)
T PF14243_consen 67 -G-------DWDLEPDP----DVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGW 116 (130)
T ss_pred -C-------CcccCCCH----HHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCcc
Confidence 0 01111233 33344444444333 33678899999988889999999854
No 113
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.16 E-value=0.054 Score=54.30 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=92.3
Q ss_pred HHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHH
Q 009323 137 SAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKL 216 (537)
Q Consensus 137 ~~a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~ 216 (537)
+-+.+.++....-.||-....+-++..+..+++. ++. +..-.+ +...+.+...=-+-++ ..+-|.+++..+
T Consensus 59 ~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~--a~aP~G---W~~~fa~~~~~~vL~G--~tvFs~~DA~~A 129 (355)
T PF11379_consen 59 AQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPD--AAAPAG---WSPAFAERVRDAVLPG--YTVFSREDARRA 129 (355)
T ss_pred hHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCC--CCCCCC---cCHHHHHHHhhhccCC--ccccCHHHHHHH
Confidence 4566677654433343333333233333344442 222 222222 3333444444345566 356788898888
Q ss_pred HHHh--CCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEEe
Q 009323 217 ADEL--GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (537)
Q Consensus 217 ~~~i--g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~~ 294 (537)
+..+ .-||=+||..+.||+|..++.+.++|+.+++.+...... ...+++|+-+....-+||--+.- .|.++.+.
T Consensus 130 ~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v-~g~~~SY~ 205 (355)
T PF11379_consen 130 ARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRV-AGLVASYY 205 (355)
T ss_pred HHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEE-CCEEEEEe
Confidence 7654 569999999999999999999999999999876543322 36799999999977788875543 23555554
Q ss_pred eeec
Q 009323 295 ERDC 298 (537)
Q Consensus 295 ~r~~ 298 (537)
...+
T Consensus 206 GtQ~ 209 (355)
T PF11379_consen 206 GTQR 209 (355)
T ss_pred eEee
Confidence 4433
No 114
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.91 E-value=0.084 Score=51.77 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=63.0
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+++|||+|+..-+..+++.+.+.|+++++-....... . ... ...+..+ ...+.+.+.++++++++++|+-
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~-~-~~~-~~~v~~G------~l~~~~~l~~~l~~~~i~~VID 71 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG-P-ADL-PGPVRVG------GFGGAEGLAAYLREEGIDLVID 71 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC-c-ccC-CceEEEC------CCCCHHHHHHHHHHCCCCEEEE
Confidence 56789999999999999999999999877643222211 1 111 2234444 2348999999999999998874
Q ss_pred C-CCccccc-HHHHHHHHHCCCcee
Q 009323 150 G-YGFLAEN-AVFVEMCREHGINFI 172 (537)
Q Consensus 150 ~-~g~~se~-~~~a~~~e~~gi~~~ 172 (537)
. +-|..+. ....++|+++|++++
T Consensus 72 ATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 72 ATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CCCccHHHHHHHHHHHHHHhCCcEE
Confidence 3 3343332 345566777777765
No 115
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.86 E-value=0.068 Score=52.70 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=59.2
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG- 150 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~- 150 (537)
++|||+|+..-+..+++.+.+.|+++++...+..............+..+ -.+.+.+.+++++.++|+|+-.
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g-------~l~~~~l~~~l~~~~i~~VIDAt 73 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG-------ALDPQELREFLKRHSIDILVDAT 73 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC-------CCCHHHHHHHHHhcCCCEEEEcC
Confidence 47999998444999999999999998876544433222222212234443 4567788899999999888743
Q ss_pred CCccccc-HHHHHHHHHCCCcee
Q 009323 151 YGFLAEN-AVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~~se~-~~~a~~~e~~gi~~~ 172 (537)
+-|..+. ....++|+++|++++
T Consensus 74 HPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 74 HPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred CHHHHHHHHHHHHHHHHhCCcEE
Confidence 2222222 234456666666654
No 116
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.72 E-value=0.067 Score=54.51 Aligned_cols=159 Identities=19% Similarity=0.150 Sum_probs=94.5
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 68 ~~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
-.+.++|+|.|.|..+...++-|+.+|.+|++++...+......++ ||..+.- .+.+.+. .+++. +|+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~---------~~~~~~~-~~~~~-~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINS---------SDSDALE-AVKEI-ADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEc---------CCchhhH-HhHhh-CcE
Confidence 3447899999999999999999999999999998887777777788 6766642 1222222 22222 999
Q ss_pred EEeCCCcccccHHHHHHHHHCCC-ceeCCCH-HHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCC-c
Q 009323 147 LHPGYGFLAENAVFVEMCREHGI-NFIGPNP-DSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-P 223 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi-~~~Gp~~-~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~-P 223 (537)
|+-..+ ........+.+...|. .++|... ..+. .-..+.-++++ +.+.-+......+.+++.+++.+.+. |
T Consensus 233 ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~---~~~~~~li~~~--~~i~GS~~g~~~d~~e~l~f~~~g~Ikp 306 (339)
T COG1064 233 IIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIP---LLPAFLLILKE--ISIVGSLVGTRADLEEALDFAAEGKIKP 306 (339)
T ss_pred EEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccC---CCCHHHhhhcC--eEEEEEecCCHHHHHHHHHHHHhCCcee
Confidence 997665 2223445566666663 3455442 1111 11112222222 22222211233455666667666553 2
Q ss_pred EEEEecCCCCCccEEEeCCHHHHHHHHHHHHH
Q 009323 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKS 255 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~ 255 (537)
.+. .....+|+.++++++.+
T Consensus 307 ~i~------------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 307 EIL------------ETIPLDEINEAYERMEK 326 (339)
T ss_pred eEE------------eeECHHHHHHHHHHHHc
Confidence 221 24578889999988764
No 117
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=95.62 E-value=0.16 Score=49.14 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=77.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+++|||+|+..-++.+++.+..++...++.........+..+.+- ...- .+++.+.+.++.++.++|.++-.
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~-~~~~-------G~l~~e~l~~~l~e~~i~llIDA 73 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP-VRVG-------GFLGAEGLAAFLREEGIDLLIDA 73 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhccCC-eeec-------CcCCHHHHHHHHHHcCCCEEEEC
Confidence 568999999999999999999999544443323333333344444 2323 38999999999999999888743
Q ss_pred -CCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCC--CCCcCccCCCHHHHHHHHHHhC
Q 009323 151 -YGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT--VPGSDGLLQSTEEAVKLADELG 221 (537)
Q Consensus 151 -~g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipv--p~~~~~~~~s~~~~~~~~~~ig 221 (537)
+-|..+. ....++|+..|++++- ++.-+... ..+ ..+.|.+++.+.+.+.+
T Consensus 74 THPyAa~iS~Na~~aake~gipy~r------------------~eRP~~~~~gd~~--~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 74 THPYAARISQNAARAAKETGIPYLR------------------LERPPWAPNGDNW--IEVADIEEAAEAAKQLG 128 (257)
T ss_pred CChHHHHHHHHHHHHHHHhCCcEEE------------------EECCccccCCCce--EEecCHHHHHHHHhccC
Confidence 1122221 2355677777777651 22211111 233 46778888877776654
No 118
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.60 E-value=0.12 Score=44.41 Aligned_cols=99 Identities=26% Similarity=0.315 Sum_probs=59.8
Q ss_pred cEEEEEcC----cHHHHHHHHHHHHcCCCEEEEecCCCCC---Chhhhc------cCEEEEcCCCCCCCCCCCHHHHHHH
Q 009323 72 EKILVANR----GEIAVRVIRTAHEMGIPCVAVYSTIDKD---ALHVKL------ADESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 72 ~kvLi~g~----g~~a~~ii~aa~~~G~~vv~v~~~~d~~---~~~~~~------ad~~~~i~~~~~~~~~~~~~~i~~~ 138 (537)
|+|.|+|. +..+.++++.+++.|++++.|+...+.. ..+..+ .|-.+..- .......+++-
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~------~~~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV------PPDKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-------HHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc------CHHHHHHHHHH
Confidence 57889993 4569999999999999999996544321 111222 23333221 12234556666
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009323 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 139 a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~ 178 (537)
+.+.++..++-..| .++.++.+.+++.|++++||+--.
T Consensus 75 ~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 75 AAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcce
Confidence 67778998887666 356788899999999999987543
No 119
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.34 E-value=0.074 Score=55.31 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=80.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcC-CCEEEEecCCCCCChhhhcc---CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLA---DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G-~~vv~v~~~~d~~~~~~~~a---d~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
|++|||+|.|.+|..++..|.+.| .++++.+...+......... =+...++ -.+.+++.+++++. |+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------AADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec-------ccChHHHHHHHhcC--CE
Confidence 479999999999999999999998 88888865433222111111 2244443 56788999998765 88
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
|+..-.+. -+..+.++|.+.|+.++-.+. .-.+.+..++.++++|+-..+.
T Consensus 72 VIn~~p~~-~~~~i~ka~i~~gv~yvDts~----~~~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 72 VINAAPPF-VDLTILKACIKTGVDYVDTSY----YEEPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred EEEeCCch-hhHHHHHHHHHhCCCEEEccc----CCchhhhhhHHHHHcCeEEEcc
Confidence 88653322 234778899999998873221 1112477888899999776554
No 120
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=95.21 E-value=0.19 Score=49.30 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=60.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEE-EecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVA-VYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~-v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
|||||+|+..-+..+++.+.+.|+ +++ +.++-.............+.++ ...+.+.+.++++++++++|+-.
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G------~lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG------RLGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC------CCCCHHHHHHHHHhCCCcEEEEC
Confidence 589999999999999999999998 432 2211111111111112234444 24489999999999999888743
Q ss_pred -CCccccc-HHHHHHHHHCCCcee
Q 009323 151 -YGFLAEN-AVFVEMCREHGINFI 172 (537)
Q Consensus 151 -~g~~se~-~~~a~~~e~~gi~~~ 172 (537)
+-|..+. ....++|+++|++++
T Consensus 74 THPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 74 THPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCchHHHHHHHHHHHHhhcCcceE
Confidence 3343332 345577788888765
No 121
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.098 Score=50.65 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=79.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhh--ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK--LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~--~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|+++|+|.|..+..+++.+.+.|+.+++++.+.+....... +....+. + +-.+.+.|.++ --.++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~-g------d~t~~~~L~~a-gi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVI-G------DATDEDVLEEA-GIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEE-e------cCCCHHHHHhc-CCCcCCEEEE
Confidence 58999999999999999999999999999765554332222 3333343 2 23344444444 3356899997
Q ss_pred CCCcccccHHHHHHHHH-CCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCH-HHHHHHHHHhCCcEE
Q 009323 150 GYGFLAENAVFVEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQST-EEAVKLADELGFPVM 225 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~-~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~-~~~~~~~~~ig~Pvv 225 (537)
..|-...+..+..+..+ +|++ ..+...+|+...+ .+++.|+.. .+... .-....+..+.+|-+
T Consensus 73 ~t~~d~~N~i~~~la~~~~gv~------~viar~~~~~~~~-~~~~~g~~~------ii~Pe~~~~~~l~~~i~~p~~ 137 (225)
T COG0569 73 ATGNDEVNSVLALLALKEFGVP------RVIARARNPEHEK-VLEKLGADV------IISPEKLAAKRLARLIVTPGA 137 (225)
T ss_pred eeCCCHHHHHHHHHHHHhcCCC------cEEEEecCHHHHH-HHHHcCCcE------EECHHHHHHHHHHHHhcCCCh
Confidence 76643334444444433 5543 3456677777666 567777332 12222 223344555666643
No 122
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.89 E-value=0.27 Score=50.05 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=45.7
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
|||||.| .|.+|..+++.+.+.|++|+++..+..........--+.+.. +..|.+.+.++. .++|+|+-.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~-------Dl~d~~~l~~al--~g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYG-------DLSLPETLPPSF--KGVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEEC-------CCCCHHHHHHHH--CCCCEEEEC
Confidence 3899999 599999999999999999998865432211001111123322 355666776666 368988754
No 123
>PRK05849 hypothetical protein; Provisional
Probab=94.52 E-value=2.1 Score=48.78 Aligned_cols=175 Identities=11% Similarity=0.182 Sum_probs=101.3
Q ss_pred HhcCHHHHHHHHHH--CCCCCCCCcCccC----CCHHHHHHHHHHh--CCcEEEEecCCC------CCccE--EE--eCC
Q 009323 181 IMGDKSTARETMKN--AGVPTVPGSDGLL----QSTEEAVKLADEL--GFPVMIKATAGG------GGRGM--RL--AKE 242 (537)
Q Consensus 181 ~~~dK~~~r~~l~~--~Gipvp~~~~~~~----~s~~~~~~~~~~i--g~PvvvKp~~g~------gg~Gv--~~--v~~ 242 (537)
.++.|...-..|+. .|.++|+.+.... .+.+.+.+..... +-|++|..+.-+ +.-|. .+ +..
T Consensus 7 ~~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 7 FFQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred ccchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 45678888888888 8999999843222 2334444433322 468999976522 22333 33 333
Q ss_pred H--HHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcEEEEEEE-EeC-CCcEEEEeeeec-----cc---ccc-cceeEE
Q 009323 243 P--DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVL-ADK-YGNVVHFGERDC-----SI---QRR-NQKLLE 309 (537)
Q Consensus 243 ~--~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~-~d~-~g~v~~~~~r~~-----~~---~~~-~~~~~~ 309 (537)
. +++..+++.+.... ...++..++||+.|.+ ...+=.++ .|. .|.-..+.+... .+ ... .+.+..
T Consensus 87 ~~~~~L~~AI~~V~aS~-~~~~~~aVlVQ~MV~~-~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~~~~~~~ 164 (783)
T PRK05849 87 DSKDQLLKAIEKVIASY-GTSKDDEILVQPMLED-IVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGSATTVYH 164 (783)
T ss_pred CcHHHHHHHHHHHHHhh-CCCCCCeEEEEeCccC-CCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCCCceeee
Confidence 3 48999998887542 2134568999999974 12222222 121 111111111110 00 000 111221
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEE
Q 009323 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEM 358 (537)
Q Consensus 310 ~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEi 358 (537)
......+.++..+++.+.+.++-+.+|. -+..+||-+|++|++|++-+
T Consensus 165 ~~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIEfaid~~g~L~lLQ~ 212 (783)
T PRK05849 165 YRDALVFKPPRLKKLIELIRELEALFGC-DFLDIEFAIDEKEELYILQV 212 (783)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCC-CCeeeEEEEccCCEEEEEEc
Confidence 1112347788889999999999988875 37889999988899999886
No 124
>PLN00016 RNA-binding protein; Provisional
Probab=93.93 E-value=0.4 Score=50.16 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=59.3
Q ss_pred CcCCCCCcEEEEE----c-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChh-----h---hcc---CEEEEcCCCCCCCC
Q 009323 65 LKVTCRQEKILVA----N-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-----V---KLA---DESVCIGEAPSSQS 128 (537)
Q Consensus 65 ~~~~~~~~kvLi~----g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~-----~---~~a---d~~~~i~~~~~~~~ 128 (537)
.....|+++|||+ | .|-+|..+++.+.+.|++|+++.......... . .+. -+.+
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v---------- 115 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTV---------- 115 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEE----------
Confidence 3445566899999 7 58899999999999999999987543321100 0 000 1111
Q ss_pred CCCHHHHHHHHHHcCCCEEEeCCCcccc-cHHHHHHHHHCCC-ceeCCC
Q 009323 129 YLLIPNVLSAAISRGCTMLHPGYGFLAE-NAVFVEMCREHGI-NFIGPN 175 (537)
Q Consensus 129 ~~~~~~i~~~a~~~~~d~V~p~~g~~se-~~~~a~~~e~~gi-~~~Gp~ 175 (537)
..|...+.++....++|.|+-..+...+ ...+.+++.+.|+ +++-.+
T Consensus 116 ~~D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 116 WGDPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred EecHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1234444444444679998865442111 1245566777787 455334
No 125
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.38 Score=51.56 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=39.3
Q ss_pred CCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhc-CCCcEEEEeccCC
Q 009323 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQN 274 (537)
Q Consensus 221 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~-~~~~~lvEe~I~g 274 (537)
....|+||....-|+|++++++.+++...+...... .+. .++.+.++.||+.
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDR 251 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccc--ccccccccceeeeeccC
Confidence 357999999999999999999999999887542211 111 1467888888875
No 126
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.39 E-value=0.093 Score=58.46 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=83.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
..+|+|+|-|..+..+++.+++.|+++++++.|++.-....+ .+..+..+ |.. ..++++.+.-.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~G------Dat-~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYG------DAT-QLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEe------eCC-CHHHHHhcCCccCCEEEEE
Confidence 368999999999999999999999999999766654333333 33334444 122 2355555655678888876
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCc
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP 223 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~P 223 (537)
.+-..++......+.+. .|....+.+++|....+ .++++|....-.. ....+.+-..+....+|+|
T Consensus 472 ~~d~~~n~~i~~~~r~~-----~p~~~IiaRa~~~~~~~-~L~~~Ga~~vv~e-~~es~l~l~~~~L~~lg~~ 537 (601)
T PRK03659 472 CNEPEDTMKIVELCQQH-----FPHLHILARARGRVEAH-ELLQAGVTQFSRE-TFSSALELGRKTLVSLGMH 537 (601)
T ss_pred eCCHHHHHHHHHHHHHH-----CCCCeEEEEeCCHHHHH-HHHhCCCCEEEcc-HHHHHHHHHHHHHHHcCCC
Confidence 54322222333333332 35556667888887776 5677887753110 1122333334455666764
No 127
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.22 E-value=0.63 Score=45.64 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=31.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
..+++|+|+|..+..+++-|+.+||+|++++..++
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999975544
No 128
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.92 E-value=0.74 Score=44.41 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=77.6
Q ss_pred EEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCCh-h-hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-H-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 74 vLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~-~-~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
|+|+| .|.+|..+++++.+.|++|.++..+.+.... . ...-.+.+.. +|.+.+.|.++.+ ++|.|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~-------d~~~~~~l~~al~--g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEA-------DYDDPESLVAALK--GVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES--------TT-HHHHHHHHT--TCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeec-------ccCCHHHHHHHHc--CCceEEee
Confidence 78999 5999999999999999999999766532111 1 1122345543 4888899988884 79998876
Q ss_pred CCccccc-----HHHHHHHHHCCCceeCCC-----H-------HHHHHhcCHHHHHHHHHHCCCCC
Q 009323 151 YGFLAEN-----AVFVEMCREHGINFIGPN-----P-------DSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~~se~-----~~~a~~~e~~gi~~~Gp~-----~-------~~i~~~~dK~~~r~~l~~~Gipv 199 (537)
.+...+. ..+.+++.+.|+..+-++ . -....+..|....+.+++.|++.
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 6533121 356677778777543221 1 13556677888889999987775
No 129
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.84 Score=48.31 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCCCCCcCccCCCHHHHHHHHHHhC-CcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 009323 197 VPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274 (537)
Q Consensus 197 ipvp~~~~~~~~s~~~~~~~~~~ig-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g 274 (537)
++.-|....+-++.+++.+.+++.. --+||||..++.|.||++++...++-. +.+++||+||+.
T Consensus 280 f~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yieR 344 (662)
T KOG2156|consen 280 FGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIER 344 (662)
T ss_pred cCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhhc
Confidence 4433333367788899988877532 228899999999999999998877542 345677777654
No 130
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.86 E-value=0.55 Score=46.81 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=52.4
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhcc-CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~a-d~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
++|||.| .|-|+...+..+.+.|++|++++.-.......+.-. -+++. + +..|.+.+.++..++++|+|+-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~-g------Di~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYE-G------DLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEE-e------ccccHHHHHHHHHhcCCCEEEE
Confidence 4799998 699999999999999999999974433222222211 13333 2 4778889999999999999984
No 131
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.70 E-value=0.71 Score=42.68 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=48.7
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+||.|+| .|..+.+|++.|.+.|++|+++-.++...... .+..+ + ..+..+.+.+.+.. .+.|+|+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i-~-----q~Difd~~~~a~~l--~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTI-L-----QKDIFDLTSLASDL--AGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---cccee-e-----cccccChhhhHhhh--cCCceEEEe
Confidence 4777777 78899999999999999999997665433211 11111 1 12344555654444 679999998
Q ss_pred CCcc
Q 009323 151 YGFL 154 (537)
Q Consensus 151 ~g~~ 154 (537)
+++.
T Consensus 70 ~~~~ 73 (211)
T COG2910 70 FGAG 73 (211)
T ss_pred ccCC
Confidence 8765
No 132
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=92.50 E-value=0.56 Score=47.39 Aligned_cols=71 Identities=27% Similarity=0.376 Sum_probs=57.5
Q ss_pred cCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCC-cEEEEecCCCCCc-----------cEEEeCCHHHHHHHH
Q 009323 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMIKATAGGGGR-----------GMRLAKEPDEFVKLL 250 (537)
Q Consensus 183 ~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~-PvvvKp~~g~gg~-----------Gv~~v~~~~el~~~~ 250 (537)
-.-+...+++++.|+.+|++ ....|+|++.++++++|- -+|||+-.-+||+ ||.+|.+++|.+..-
T Consensus 25 ~hey~~~~ll~~~Gv~vp~g--~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va 102 (434)
T KOG2799|consen 25 IHEYRSAALLRKYGINVPLG--YVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVA 102 (434)
T ss_pred HHHHHHHHHHHHcCCCCCCC--cccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHH
Confidence 34455578999999999999 689999999999999974 5999996655444 488999999998887
Q ss_pred HHHHH
Q 009323 251 QQAKS 255 (537)
Q Consensus 251 ~~~~~ 255 (537)
.++..
T Consensus 103 ~qmiG 107 (434)
T KOG2799|consen 103 SQMIG 107 (434)
T ss_pred HHhhc
Confidence 77653
No 133
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=92.29 E-value=3.8 Score=41.37 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCcEEEEecCCCC-------CccEEEeCCHHHHHHHHHHHH---HHHHHhc------------CCCcEEE
Q 009323 211 EEAVKLADELGFPVMIKATAGGG-------GRGMRLAKEPDEFVKLLQQAK---SEAAAAF------------GNDGVYL 268 (537)
Q Consensus 211 ~~~~~~~~~ig~PvvvKp~~g~g-------g~Gv~~v~~~~el~~~~~~~~---~~~~~~~------------~~~~~lv 268 (537)
+++.++.+++|--|+.|-...+- ..+...|++..|+.-.+..-. ..-...+ ....+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 45677788999889999766652 223457888888765554211 1100100 1246788
Q ss_pred EeccCCCcEEEEEEEEeCCCcEEEEeeeecccccccceeEEEcCCC-CCCHHHHHHHHHHH-HHHHHHcCCcceeEEEEE
Q 009323 269 EKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSP-ALTPELRKAMGDAA-VAAAASIGYIGVGTVEFL 346 (537)
Q Consensus 269 Ee~I~g~~e~~v~v~~d~~g~v~~~~~r~~~~~~~~~~~~~~~p~~-~l~~~~~~~i~~~a-~~i~~alg~~G~~~vEf~ 346 (537)
-+|..-....++-+++- +++++.+..|++.+ .+.. .....+.+.|.+.. ..+...+.+ .-+.+|+.
T Consensus 155 rkw~~l~p~~EFRcFV~-~~~LiaISQr~~~~----------~~~L~~~~~~I~~~I~~F~~~~I~~~~~~-~~~v~DVy 222 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR-NRKLIAISQRDLNY----------YDFLEELKEEIRSKIQEFFEEHIKPKFPL-DNYVFDVY 222 (299)
T ss_pred eccccCCccceEEEEEE-CCEEEEEecccccc----------cHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEEE
Confidence 88886644555555553 56899887665411 1110 02334444555555 234445554 34559999
Q ss_pred EeCC-CCEEEEEEecCCC
Q 009323 347 LDER-GSFYFMEMNTRIQ 363 (537)
Q Consensus 347 ~~~~-g~~~~lEiNpR~~ 363 (537)
++.+ +++++||+||--.
T Consensus 223 i~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 223 ITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred EcCCCCeEEEEEecCCcc
Confidence 9966 7899999999764
No 134
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.15 E-value=0.2 Score=56.02 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=81.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.++|+|+|.|..+..+++.+++.|+++++++.|++.-....+. +..+..+ +-.+ .++++.+.-.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~G------Dat~-~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-GMKVFYG------DATR-MDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-CCeEEEE------eCCC-HHHHHhcCCCcCCEEEEE
Confidence 4689999999999999999999999999997666543322332 3334444 1223 345555555678888866
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCC-HHHHHHHHHHhCCc
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS-TEEAVKLADELGFP 223 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s-~~~~~~~~~~ig~P 223 (537)
.+-...|......+.++ .|+...+.+.+|..... .+++.|...... ....+ ..-.....+.+|.|
T Consensus 472 ~~d~~~n~~i~~~ar~~-----~p~~~iiaRa~d~~~~~-~L~~~Gad~v~~--e~~e~sl~l~~~~L~~lg~~ 537 (621)
T PRK03562 472 IDDPQTSLQLVELVKEH-----FPHLQIIARARDVDHYI-RLRQAGVEKPER--ETFEGALKSGRLVLESLGLG 537 (621)
T ss_pred eCCHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHHH-HHHHCCCCEEeh--hhHhHHHHHHHHHHHHcCCC
Confidence 54222233333344433 24555566777876655 567788776532 22222 22233455566664
No 135
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.04 E-value=1 Score=52.96 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=100.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHc-CCC-------------EEEEecCCCCCChhhhccCE-----EEEcCCCCCCCCCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEM-GIP-------------CVAVYSTIDKDALHVKLADE-----SVCIGEAPSSQSYLL 131 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~-G~~-------------vv~v~~~~d~~~~~~~~ad~-----~~~i~~~~~~~~~~~ 131 (537)
+|||+|+|.|.++..+++.+.+. +++ +.+. +.+... ...+++. .+.+ ++.|
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va--D~~~~~-a~~la~~~~~~~~v~l-------Dv~D 638 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA--SLYLKD-AKETVEGIENAEAVQL-------DVSD 638 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE--CCCHHH-HHHHHHhcCCCceEEe-------ecCC
Confidence 68999999999999999999875 333 3334 322111 1222221 2333 2678
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHH
Q 009323 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE 211 (537)
Q Consensus 132 ~~~i~~~a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~ 211 (537)
.+.+.+++. ++|+|+....+ .-+...++.|.+.|..++.-+ ....+-..+.+.++++|+...... .+.-..+
T Consensus 639 ~e~L~~~v~--~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek----y~~~e~~~L~e~Ak~AGV~~m~e~-GlDPGid 710 (1042)
T PLN02819 639 SESLLKYVS--QVDVVISLLPA-SCHAVVAKACIELKKHLVTAS----YVSEEMSALDSKAKEAGITILCEM-GLDPGID 710 (1042)
T ss_pred HHHHHHhhc--CCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc----CCHHHHHHHHHHHHHcCCEEEECC-ccCHHHH
Confidence 888887765 49999977533 235788899999999987544 112223456678889999887653 2333344
Q ss_pred H--HHHHHHHh----CCcEEEEecCCC--------CCccEEEeCCHHHHHHHH
Q 009323 212 E--AVKLADEL----GFPVMIKATAGG--------GGRGMRLAKEPDEFVKLL 250 (537)
Q Consensus 212 ~--~~~~~~~i----g~PvvvKp~~g~--------gg~Gv~~v~~~~el~~~~ 250 (537)
. +.+.+++. |-...++...|+ .-.+-.+-.|++.+...+
T Consensus 711 ~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~ 763 (1042)
T PLN02819 711 HMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAG 763 (1042)
T ss_pred HHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHh
Confidence 4 44455544 766667766665 223344556776665544
No 136
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.91 E-value=0.13 Score=43.73 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=61.9
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009323 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 74 vLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~ 153 (537)
|+|+|.|..+..+++.+++.++++++++.+++........-...+. + +..+.+.+.++ .-.+++.|+...+-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~-g------d~~~~~~l~~a-~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIY-G------DATDPEVLERA-GIEKADAVVILTDD 72 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEE-S-------TTSHHHHHHT-TGGCESEEEEESSS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccccc-c------cchhhhHHhhc-CccccCEEEEccCC
Confidence 6899999999999999999888999997655432222222233343 3 34454444443 44578888876553
Q ss_pred ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCC
Q 009323 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (537)
Q Consensus 154 ~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gip 198 (537)
..++...+..+++++ |....+..+.|... .+.|+++|+.
T Consensus 73 d~~n~~~~~~~r~~~-----~~~~ii~~~~~~~~-~~~l~~~g~d 111 (116)
T PF02254_consen 73 DEENLLIALLARELN-----PDIRIIARVNDPEN-AELLRQAGAD 111 (116)
T ss_dssp HHHHHHHHHHHHHHT-----TTSEEEEEESSHHH-HHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHC-----CCCeEEEEECCHHH-HHHHHHCCcC
Confidence 333444445554421 22222233444444 3355667664
No 137
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.76 E-value=0.6 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++|||+|+|..|.+-++.+.+.|..++++..+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 469999999999999999999999999998543
No 138
>PRK04148 hypothetical protein; Provisional
Probab=91.40 E-value=0.45 Score=41.90 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=48.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhc-------------------cCEEEEcCCCCCCCCCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-------------------ADESVCIGEAPSSQSYLL 131 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~-------------------ad~~~~i~~~~~~~~~~~ 131 (537)
.+|+|++|-| .+..++..+.++|++|++++.++......... ||-.+.+-|+ ..-
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp-----~el 90 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP-----RDL 90 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC-----HHH
Confidence 3689999999 77888999999999999997655422111111 2222222211 122
Q ss_pred HHHHHHHHHHcCCCEEEeC
Q 009323 132 IPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 132 ~~~i~~~a~~~~~d~V~p~ 150 (537)
+..+++++++.++|.++-.
T Consensus 91 ~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 91 QPFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 4567888888888887754
No 139
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.40 E-value=0.44 Score=52.69 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=74.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
..+++|+|.|..+..+++.+++.|+++++++.|++......+. +..+..+ +..+ +++++.+.-.++|+++-.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-g~~~i~G------D~~~-~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-GIRAVLG------NAAN-EEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCeEEEc------CCCC-HHHHHhcCccccCEEEEE
Confidence 4689999999999999999999999999997665543333332 3333333 2333 344555555678877754
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCc
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP 223 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~P 223 (537)
.+-..++......+.+. .|....+.+..|.... +.+++.|+... .....+-+.+..+.+..|
T Consensus 489 ~~~~~~~~~iv~~~~~~-----~~~~~iiar~~~~~~~-~~l~~~Gad~v-----v~p~~~~a~~i~~~l~~~ 550 (558)
T PRK10669 489 IPNGYEAGEIVASAREK-----RPDIEIIARAHYDDEV-AYITERGANQV-----VMGEREIARTMLELLETP 550 (558)
T ss_pred cCChHHHHHHHHHHHHH-----CCCCeEEEEECCHHHH-HHHHHcCCCEE-----EChHHHHHHHHHHHhcCC
Confidence 33222222222222222 1233344455565443 35677886642 111223344555555554
No 140
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=91.06 E-value=0.47 Score=40.87 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCChhhhc-------c-CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CCc
Q 009323 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-------A-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGF 153 (537)
Q Consensus 83 a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~-------a-d~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~-~g~ 153 (537)
|..|++++.+.+|+++.++-+.+........ . +.............-.. ........+|.|+|. +|.
T Consensus 21 a~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~DvvFp~lHG~ 96 (117)
T PF01820_consen 21 ARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISASLI----EKNEQKLEVDVVFPVLHGP 96 (117)
T ss_dssp HHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEEET----TESTTCTTCSEEEEECCST
T ss_pred HHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhcccccccccccccc----ccccccccCCEEEEeccCC
Confidence 7889999999999999887555432111000 0 00000000000000000 000004679999998 788
Q ss_pred ccccHHHHHHHHHCCCceeCC
Q 009323 154 LAENAVFVEMCREHGINFIGP 174 (537)
Q Consensus 154 ~se~~~~a~~~e~~gi~~~Gp 174 (537)
..|+..+..+++-+++|++|+
T Consensus 97 ~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 97 NGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp TTSSSHHHHHHHHTT-EBSSS
T ss_pred CCcccHHHHHHHHcCCCCcCC
Confidence 889999999999999999984
No 141
>PRK06988 putative formyltransferase; Provisional
Probab=90.90 E-value=0.84 Score=46.47 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD 107 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~ 107 (537)
||+||+++|.+..+...++++.+.|+++++|.+.+|..
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~ 38 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNP 38 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 34699999999999999999999999999888776543
No 142
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=90.62 E-value=0.82 Score=45.90 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=44.2
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
|||||+| .|.+|..+.+.+++.|++++.++.. .+ +..|.+.+.++.+..++|.|+-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~-------dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DL-------DLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS--------TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hc-------CCCCHHHHHHHHHHhCCCeEecc
Confidence 5899999 6999999999999999998888422 12 24578889999888899999865
Q ss_pred CC
Q 009323 151 YG 152 (537)
Q Consensus 151 ~g 152 (537)
-+
T Consensus 59 aa 60 (286)
T PF04321_consen 59 AA 60 (286)
T ss_dssp --
T ss_pred ce
Confidence 43
No 143
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.58 E-value=1.1 Score=42.58 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=28.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.++|||+|+|..|.+.++.+.+.|.+++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 4799999999999999999999999999884
No 144
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.54 E-value=2.9 Score=43.94 Aligned_cols=74 Identities=19% Similarity=0.093 Sum_probs=49.7
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCC----h--hh-hc-cCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA----L--HV-KL-ADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~----~--~~-~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~ 141 (537)
.++|||+|+ |.++..+++.+.+.|++|+++..+..... . .. .. --+.+.. +..|.+.+.++++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~-------Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG-------DVTDADSLRKVLFS 132 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEe-------eCCCHHHHHHHHHH
Confidence 568999995 88999999999999999998865442211 0 00 01 1123332 36677788887776
Q ss_pred c--CCCEEEeCC
Q 009323 142 R--GCTMLHPGY 151 (537)
Q Consensus 142 ~--~~d~V~p~~ 151 (537)
. ++|.|+...
T Consensus 133 ~~~~~D~Vi~~a 144 (390)
T PLN02657 133 EGDPVDVVVSCL 144 (390)
T ss_pred hCCCCcEEEECC
Confidence 5 699988543
No 145
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=90.01 E-value=0.71 Score=40.89 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=45.4
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009323 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (537)
Q Consensus 74 vLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~ 153 (537)
++|+|+|..+..+++-++.+|++|++++.+++ ....+++.... ..+.+.+...-..-++|+-.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----~~~~~~~~~~~----------~~~~~~~~~~~~~~t~Vv~th~h 66 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----RFPEADEVICI----------PPDDILEDLEIDPNTAVVMTHDH 66 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----C-TTSSEEECS----------HHHHHHHHC-S-TT-EEE--S-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----ccCCCCccEec----------ChHHHHhccCCCCCeEEEEcCCc
Confidence 68999999999999999999999999976644 22345553322 22333333222233455544544
Q ss_pred ccccHHHHHHHHHCCCceeC
Q 009323 154 LAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 154 ~se~~~~a~~~e~~gi~~~G 173 (537)
..+. ...+.+......++|
T Consensus 67 ~~D~-~~L~~~l~~~~~YiG 85 (136)
T PF13478_consen 67 ELDA-EALEAALASPARYIG 85 (136)
T ss_dssp CCHH-HHHHHHTTSS-SEEE
T ss_pred hhHH-HHHHHHHcCCCCEEE
Confidence 3233 333444344555554
No 146
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.01 E-value=1.7 Score=40.01 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=48.2
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccC-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 74 ILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 74 vLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
|+|+|+ |.+|..+++.+.+.|++|+++..++..... ... +.+.. +..|.+.+.+..+ ++|+|+-..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~-------d~~d~~~~~~al~--~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQG-------DLFDPDSVKAALK--GADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEES-------CTTCHHHHHHHHT--TSSEEEECC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---cccccccee-------eehhhhhhhhhhh--hcchhhhhh
Confidence 789995 999999999999999999999755442211 222 23332 4677788888775 799999655
Q ss_pred C
Q 009323 152 G 152 (537)
Q Consensus 152 g 152 (537)
|
T Consensus 69 ~ 69 (183)
T PF13460_consen 69 G 69 (183)
T ss_dssp H
T ss_pred h
Confidence 3
No 147
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.74 E-value=1.8 Score=39.28 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=28.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.++|||+|+|..|.+.++.+.+.|.+++++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4799999999999999999999999999983
No 148
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=89.15 E-value=2.9 Score=43.18 Aligned_cols=74 Identities=28% Similarity=0.326 Sum_probs=46.8
Q ss_pred CCCCcEEEEEc-CcHHHHHHHHHHHHcC-CCEEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHH---
Q 009323 68 TCRQEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAIS--- 141 (537)
Q Consensus 68 ~~~~~kvLi~g-~g~~a~~ii~aa~~~G-~~vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~--- 141 (537)
-+..++|||.| +|..+..+++-|+..| ..++++.+... .....++ ||+.+. |.+. ++++..++
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~-~~l~k~lGAd~vvd---------y~~~-~~~e~~kk~~~ 223 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEK-LELVKKLGADEVVD---------YKDE-NVVELIKKYTG 223 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccch-HHHHHHcCCcEeec---------CCCH-HHHHHHHhhcC
Confidence 34467888888 5678999999999999 55555544333 2222222 566663 6663 34444443
Q ss_pred cCCCEEEeCCC
Q 009323 142 RGCTMLHPGYG 152 (537)
Q Consensus 142 ~~~d~V~p~~g 152 (537)
.++|.|+-..|
T Consensus 224 ~~~DvVlD~vg 234 (347)
T KOG1198|consen 224 KGVDVVLDCVG 234 (347)
T ss_pred CCccEEEECCC
Confidence 47999997654
No 149
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.10 E-value=0.87 Score=35.97 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=42.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
||+|+|+|.++..++..++++|.++.+++..+... ...| ....+.+.+..++.+++.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----~~~~-------------~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----PGFD-------------PDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----TTSS-------------HHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----hhcC-------------HHHHHHHHHHHHHCCCEEEe
Confidence 68999999999999999999999999996544322 1111 11234566677777776655
No 150
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=89.10 E-value=2.7 Score=41.74 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=64.2
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc-CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~-G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+||.|+|.|.++..+++.+.+. +.+++.+.................+ .-+.+.+.+ ...+|+|+-.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~--------~~~~d~~~l-----~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAV--------RVVSSVDAL-----PQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCC--------eeeCCHHHh-----ccCCCEEEEC
Confidence 5899999999999999999886 6777666522111110011110001 124455554 3569999855
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gip 198 (537)
.+.. ...+.+..+.+.|++++--++.++.........++.+++.|..
T Consensus 69 t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 69 AGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 4321 2245566666788887744555442222234456667777764
No 151
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=88.60 E-value=2 Score=44.89 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=45.2
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.|||||.|+ |-++..+++.+.+.|++|++++...+..........+.+.. +..+.+.+..+.. ++|.|+-
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~--~~D~Vih 91 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLV-------DLRVMENCLKVTK--GVDHVFN 91 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEEC-------CCCCHHHHHHHHh--CCCEEEE
Confidence 368999996 99999999999999999999864332111111112233322 2445566655553 5888774
Q ss_pred C
Q 009323 150 G 150 (537)
Q Consensus 150 ~ 150 (537)
.
T Consensus 92 ~ 92 (370)
T PLN02695 92 L 92 (370)
T ss_pred c
Confidence 3
No 152
>PRK10537 voltage-gated potassium channel; Provisional
Probab=88.50 E-value=1.4 Score=46.37 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=65.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.++++|+|-|..+..+++.+++.|+++++++.+. ... ....+..+..+ +..+. +.++.+.-.++++|+..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~-~~~~g~~vI~G------D~td~-e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEH-RLPDDADLIPG------DSSDS-AVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhh-hccCCCcEEEe------CCCCH-HHHHhcCcccCCEEEEc
Confidence 4679999999999999999999999999996432 111 11112223333 23343 44444444568888876
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipv 199 (537)
.+-..+|......+++. +|+...+..+.|... .+.++++|...
T Consensus 310 t~dD~~Nl~ivL~ar~l-----~p~~kIIa~v~~~~~-~~~L~~~GaD~ 352 (393)
T PRK10537 310 RDNDADNAFVVLAAKEM-----SSDVKTVAAVNDSKN-LEKIKRVHPDM 352 (393)
T ss_pred CCChHHHHHHHHHHHHh-----CCCCcEEEEECCHHH-HHHHHhcCCCE
Confidence 54333343333333433 234444445555544 34567777654
No 153
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=88.13 E-value=2.6 Score=41.94 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=65.5
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHHHc--CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009323 68 TCRQEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 68 ~~~~~kvLi~g~g~~a~~ii~aa~~~--G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 145 (537)
.|...||.|+|-|.++..+++.+.+. |++++.++. .+... ...+++++- . ...+.+.++++ ..+|
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d-r~~~~-a~~~a~~~g-~-----~~~~~~~eell-----~~~D 69 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV-RDPQR-HADFIWGLR-R-----PPPVVPLDQLA-----THAD 69 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC-CCHHH-HHHHHHhcC-C-----CcccCCHHHHh-----cCCC
Confidence 34457999999999999999999873 788876653 22211 122332210 0 01245666663 2489
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCC
Q 009323 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (537)
Q Consensus 146 ~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gip 198 (537)
+|+-.... ....+....+.+.|..++.-+..++. +-..+.+.+++.|.+
T Consensus 70 ~Vvi~tp~-~~h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 70 IVVEAAPA-SVLRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQ 118 (271)
T ss_pred EEEECCCc-HHHHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCE
Confidence 99865432 11244445555678776643333222 334556666777665
No 154
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.13 E-value=2 Score=42.56 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|.|++||.|+ |.+|..+++.+.+.|++|+++..+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678999995 8899999999999999999986543
No 155
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.13 E-value=2.1 Score=41.08 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=29.3
Q ss_pred CCCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 68 ~~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.+++|+|||+| .|.++..+++.+.+.|++++++..
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 45568999999 588999999999999999877543
No 156
>PLN02572 UDP-sulfoquinovose synthase
Probab=88.11 E-value=4.7 Score=43.17 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=29.2
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEe
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.++|+|||.| .|-+|..+++.+.+.|++|++++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 3457899999 58899999999999999999985
No 157
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.10 E-value=0.49 Score=39.67 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=49.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.++|||+|+|..|.+-++.+.+.|-+++++..+. .......+ ... ..|. +. -.+++.|+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~-~~~-------~~~~--~~------l~~~~lV~~a 67 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQ-LIR-------REFE--ED------LDGADLVFAA 67 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCE-EEE-------SS-G--GG------CTTESEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHH-HHh-------hhHH--HH------HhhheEEEec
Confidence 4799999999999999999999999999986543 10011111 111 1110 00 1357788876
Q ss_pred CCcccccHHHHHHHHHCCCce
Q 009323 151 YGFLAENAVFVEMCREHGINF 171 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~ 171 (537)
.+-...+..+.+.+++.|+++
T Consensus 68 t~d~~~n~~i~~~a~~~~i~v 88 (103)
T PF13241_consen 68 TDDPELNEAIYADARARGILV 88 (103)
T ss_dssp SS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhhCCEEE
Confidence 654333456667777777764
No 158
>PRK05693 short chain dehydrogenase; Provisional
Probab=88.08 E-value=1.7 Score=42.86 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=45.3
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~-----~~~ 144 (537)
||++||.| .|.++..+++.+.+.|++|++++.+.+.........-..+.++ ..+.+.+.+++.. .++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~D-------l~~~~~~~~~~~~~~~~~~~i 73 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLD-------VNDGAALARLAEELEAEHGGL 73 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEee-------CCCHHHHHHHHHHHHHhcCCC
Confidence 47899999 5789999999999999999988644321110001111233332 4444455444433 258
Q ss_pred CEEEeCCC
Q 009323 145 TMLHPGYG 152 (537)
Q Consensus 145 d~V~p~~g 152 (537)
|.|+-.-|
T Consensus 74 d~vi~~ag 81 (274)
T PRK05693 74 DVLINNAG 81 (274)
T ss_pred CEEEECCC
Confidence 98886654
No 159
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=87.96 E-value=2.6 Score=46.74 Aligned_cols=202 Identities=13% Similarity=0.198 Sum_probs=109.2
Q ss_pred CCEEEeCC--CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCC---HHHHHHHHH
Q 009323 144 CTMLHPGY--GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS---TEEAVKLAD 218 (537)
Q Consensus 144 ~d~V~p~~--g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s---~~~~~~~~~ 218 (537)
||.++..+ ||--|- +.+-.++.-||+-++...-..+.|+....++|++.||++|.+ ..++. .++...+.+
T Consensus 91 CdcLIsFhSsGFPLdK---AiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRy--a~~nr~~pn~~~~~lie 165 (1018)
T KOG1057|consen 91 CDCLISFHSKGFPLDK---AVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRY--AILNRDPPNPKLCNLIE 165 (1018)
T ss_pred cceEEEeccCCCChHH---HHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCcee--EeecCCCCChHHhhhhc
Confidence 66666543 443222 223334556887789999999999999999999999999987 33221 112222222
Q ss_pred ----------HhCCcEEEEecCCCCCccEEEeC--C-HHHHHHHHHHHHHHHHHhc------CCCcEEEEeccCC-CcEE
Q 009323 219 ----------ELGFPVMIKATAGGGGRGMRLAK--E-PDEFVKLLQQAKSEAAAAF------GNDGVYLEKYVQN-PRHI 278 (537)
Q Consensus 219 ----------~ig~PvvvKp~~g~gg~Gv~~v~--~-~~el~~~~~~~~~~~~~~~------~~~~~lvEe~I~g-~~e~ 278 (537)
.+.-|+|=||++|-. ..|++.+ + -.--+..|+++-+.+-..- ..+.++-|+|++- +.++
T Consensus 166 ~eD~vEVnGevf~KPFVEKPVs~ED-HNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDV 244 (1018)
T KOG1057|consen 166 GEDHVEVNGEVFQKPFVEKPVSAED-HNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDV 244 (1018)
T ss_pred CCCeEEEcceeccCCcccCCCCccc-ccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccc
Confidence 234699999987642 1222221 1 1122334444322111000 1257999999985 2333
Q ss_pred EEEEEEeCCCcEEEEeee-----ecccccccceeEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCE
Q 009323 279 EFQVLADKYGNVVHFGER-----DCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSF 353 (537)
Q Consensus 279 ~v~v~~d~~g~v~~~~~r-----~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~ 353 (537)
-|-.++- +..|.-.| |..+.|....--...|.. +++... .+|.+++-+++- -++++|++. .+|.=
T Consensus 245 KvYTVGp---~YaHAEaRKSPvvDGkV~Rns~GKEvRYpv~-Ls~~EK----~iA~KVciAF~Q-~VCGFDLLR-a~G~S 314 (1018)
T KOG1057|consen 245 KVYTVGP---DYAHAEARKSPVVDGKVERNSDGKEVRYPVI-LNSSEK----QIARKVCIAFKQ-TVCGFDLLR-ANGKS 314 (1018)
T ss_pred eEEeeCc---chhhhhhccCccccceeeecCCCceeeceee-cChhhH----HHHhHHHhhccc-cccchHHhh-cCCce
Confidence 3333321 11111111 111111111111123332 555443 578888888874 566788765 46889
Q ss_pred EEEEEecC
Q 009323 354 YFMEMNTR 361 (537)
Q Consensus 354 ~~lEiNpR 361 (537)
|++.||.-
T Consensus 315 YVcDVNGf 322 (1018)
T KOG1057|consen 315 YVCDVNGF 322 (1018)
T ss_pred EEEeccce
Confidence 99999864
No 160
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=87.95 E-value=1.2 Score=38.95 Aligned_cols=97 Identities=20% Similarity=0.312 Sum_probs=58.0
Q ss_pred CcEEEEEcCcH----HHHHHHHHHHHcCCCEEEEecCCCC-----CChhhhccCEEEEcCCCCCCCCCCC---HHHHHHH
Q 009323 71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDK-----DALHVKLADESVCIGEAPSSQSYLL---IPNVLSA 138 (537)
Q Consensus 71 ~~kvLi~g~g~----~a~~ii~aa~~~G~~vv~v~~~~d~-----~~~~~~~ad~~~~i~~~~~~~~~~~---~~~i~~~ 138 (537)
.|+|.++|... .+.++.+.+.+.||+++-|++.-+. ...+.+++|-...++ -.+-|.. ...+++-
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~ID---iVdvFR~~e~~~~i~~e 92 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPID---IVDVFRRSEAAPEVARE 92 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCc---EEEEecChhhhHHHHHH
Confidence 58899999655 4999999999999999999541121 111122222111110 0011222 2344444
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 139 a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
+.+.++..+|--.|. ++.+..+.+++.|+.++
T Consensus 93 al~~~~kv~W~QlGi--~n~ea~~~~~~aG~~vV 124 (140)
T COG1832 93 ALEKGAKVVWLQLGI--RNEEAAEKARDAGLDVV 124 (140)
T ss_pred HHhhCCCeEEEecCc--CCHHHHHHHHHhCcHHH
Confidence 555678888877776 55567778888887544
No 161
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=87.81 E-value=3.5 Score=43.97 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhh-------ccCEEEEcCCCCCCCCCCCHHHHHHHHHHc
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-------LADESVCIGEAPSSQSYLLIPNVLSAAISR 142 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~-------~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~ 142 (537)
..||+.|++....+..+.+.+.++|.+++++.++......... ..++.+.++ ..|..++.+++++.
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~-------~~d~~e~~~~l~~~ 371 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD-------GADFFDIESYAKEL 371 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEe-------CCCHHHHHHHHHhc
Confidence 3579999998888999999999999998776544322221111 123333321 34677888888888
Q ss_pred CCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 143 GCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 143 ~~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
++|.++... .-..+++++|++++
T Consensus 372 ~~dliiG~s-------~~~~~a~~~~ip~~ 394 (429)
T cd03466 372 KIDVLIGNS-------YGRRIAEKLGIPLI 394 (429)
T ss_pred CCCEEEECc-------hhHHHHHHcCCCEE
Confidence 888888432 12345566777764
No 162
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.77 E-value=11 Score=36.87 Aligned_cols=164 Identities=18% Similarity=0.248 Sum_probs=93.2
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
++|||.| .|-++..+++.+.+.|++|+++..+++...... ..-.+.. .++.+.+.+...+ .++|.++-.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~------~d~~~~~~l~~a~--~G~~~~~~i 70 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVL------GDLRDPKSLVAGA--KGVDGVLLI 70 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEE------eccCCHhHHHHHh--ccccEEEEE
Confidence 4799999 688999999999999999999976665443333 2222222 2577778887777 456665433
Q ss_pred CCcc-------cc-cHHHHHHHHHCC--Cc------eeCCC-HHHHHHhcCHHHHHHHHHHCCCCC----CCCcCccCCC
Q 009323 151 YGFL-------AE-NAVFVEMCREHG--IN------FIGPN-PDSIRIMGDKSTARETMKNAGVPT----VPGSDGLLQS 209 (537)
Q Consensus 151 ~g~~-------se-~~~~a~~~e~~g--i~------~~Gp~-~~~i~~~~dK~~~r~~l~~~Gipv----p~~~~~~~~s 209 (537)
.+.. .. .-.+....+..+ .. .++.. .........|...-+.+...|++. ++++ ....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~t~lr~~~~--~~~~ 148 (275)
T COG0702 71 SGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPYTTLRRAAF--YLGA 148 (275)
T ss_pred ecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCeEEEecCee--eecc
Confidence 3211 11 112233333333 21 33433 244667788999999999999993 2331 1222
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHH
Q 009323 210 TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQA 253 (537)
Q Consensus 210 ~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~ 253 (537)
.......+..-+.|++..+.. ..-.-..+++..++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~d~a~~~~~~ 186 (275)
T COG0702 149 GAAFIEAAEAAGLPVIPRGIG------RLSPIAVDDVAEALAAA 186 (275)
T ss_pred chhHHHHHHhhCCceecCCCC------ceeeeEHHHHHHHHHHH
Confidence 222233444555555544432 22233455665555443
No 163
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=87.61 E-value=4 Score=39.74 Aligned_cols=107 Identities=20% Similarity=0.267 Sum_probs=74.6
Q ss_pred HHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCc-EEEEecCCCCC--cc---------EEEeCCHHHHHHHHHH
Q 009323 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGG--RG---------MRLAKEPDEFVKLLQQ 252 (537)
Q Consensus 185 K~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~P-vvvKp~~g~gg--~G---------v~~v~~~~el~~~~~~ 252 (537)
.+.++++|+++|+.+-.+ ...++..++.+.+..++-| .|+|+---.|| +| |.+-.+.+...+..++
T Consensus 24 EfQSK~~l~k~Gv~vQ~F--~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRF--FVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HhhhHHHHHhcCeeEEEE--EEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 457789999999999887 5677778888888888765 79998554444 33 5677888888888877
Q ss_pred HHHHHHHh--cC-----CCcEEEEeccCCCcEEEEEEEEeCC--CcEEEE
Q 009323 253 AKSEAAAA--FG-----NDGVYLEKYVQNPRHIEFQVLADKY--GNVVHF 293 (537)
Q Consensus 253 ~~~~~~~~--~~-----~~~~lvEe~I~g~~e~~v~v~~d~~--g~v~~~ 293 (537)
+......- -+ -..+++-+-++-.||--+.++.|+. |.++..
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlva 151 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVA 151 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEe
Confidence 75443210 11 1367888888877777777777663 555443
No 164
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.39 E-value=1.6 Score=46.65 Aligned_cols=75 Identities=8% Similarity=0.028 Sum_probs=48.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhh-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~-~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.++++|+|.|..+..+++.+.+.|+++++++.+++....... ..+..+..+ +..+.+.+.+ +.-.++|+|+.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~g------d~~~~~~L~~-~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHG------DGTDQELLEE-EGIDEADAFIA 303 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEEC------CCCCHHHHHh-cCCccCCEEEE
Confidence 589999999999999999999999999999655542221111 112223333 2334444433 33356888886
Q ss_pred CCC
Q 009323 150 GYG 152 (537)
Q Consensus 150 ~~g 152 (537)
..+
T Consensus 304 ~~~ 306 (453)
T PRK09496 304 LTN 306 (453)
T ss_pred CCC
Confidence 554
No 165
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=87.20 E-value=1.5 Score=43.30 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCC-ChhhhccCEE----EEcCCCCCCCCCCCHHHHHHHHHH
Q 009323 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADES----VCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 68 ~~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~-~~~~~~ad~~----~~i~~~~~~~~~~~~~~i~~~a~~ 141 (537)
.++++++||.| ++.+|..+++.+.+.|+.++++..+.+.. ....++.+++ ..+. .+-.+..+.+.+.+..+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~--~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIP--ADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE--CcCCChhHHHHHHHHHHh
Confidence 45578999999 68899999999999999999997665532 2223333322 2221 111233455566655555
Q ss_pred c--CCCEEEeCCCc
Q 009323 142 R--GCTMLHPGYGF 153 (537)
Q Consensus 142 ~--~~d~V~p~~g~ 153 (537)
. .+|.++-.-||
T Consensus 81 ~~~~IdvLVNNAG~ 94 (265)
T COG0300 81 RGGPIDVLVNNAGF 94 (265)
T ss_pred cCCcccEEEECCCc
Confidence 4 79998876443
No 166
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.14 E-value=3.8 Score=43.70 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=59.0
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhh-ccCEE--EEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADES--VCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~-~ad~~--~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.+|||+|+|=|..++.+++.+++.|+++++.+..++....... ...+. +..+ ..+. .....+|.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g-------~~~~------~~~~~~d~ 72 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELG-------SHDD------EDLAEFDL 72 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecC-------ccch------hccccCCE
Confidence 3689999999999999999999999999999755554211111 11111 2121 1111 11245888
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeC
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~G 173 (537)
|+...|.-..++ ..+.+.+.|++++|
T Consensus 73 vV~SPGi~~~~p-~v~~A~~~gi~i~~ 98 (448)
T COG0771 73 VVKSPGIPPTHP-LVEAAKAAGIEIIG 98 (448)
T ss_pred EEECCCCCCCCH-HHHHHHHcCCcEEe
Confidence 888777655555 45667788999886
No 167
>PRK08177 short chain dehydrogenase; Provisional
Probab=87.11 E-value=2.2 Score=40.69 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=45.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccC-EEEEcCCCCCCCCCCCHHHH---HHHHHHcCCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNV---LSAAISRGCT 145 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~~~~~~~~i---~~~a~~~~~d 145 (537)
+|++||.| .|.++..+++.+.+.|+++++++.+++.......... ..+.+ +..+.+.+ .+.+...++|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-------D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKL-------DMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEc-------CCCCHHHHHHHHHHhhcCCCC
Confidence 36899999 6789999999999999999998765443211111111 12222 23344444 4444334689
Q ss_pred EEEeCCC
Q 009323 146 MLHPGYG 152 (537)
Q Consensus 146 ~V~p~~g 152 (537)
.|+-..|
T Consensus 74 ~vi~~ag 80 (225)
T PRK08177 74 LLFVNAG 80 (225)
T ss_pred EEEEcCc
Confidence 8886544
No 168
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.85 E-value=4.8 Score=44.28 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 67 VTCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 67 ~~~~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
..++.++|||.|+ |.+|..+++.+.+.|++|+++..+.+
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3445678999995 88999999999999999998865443
No 169
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=86.85 E-value=3.1 Score=43.08 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=56.3
Q ss_pred CcEEEEEcCcHH-----HHHHHHHHHHcCCCEEEEecCCCCCChhh-hccCEEEEcCCCCCCC--CC----------CCH
Q 009323 71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLADESVCIGEAPSSQ--SY----------LLI 132 (537)
Q Consensus 71 ~~kvLi~g~g~~-----a~~ii~aa~~~G~~vv~v~~~~d~~~~~~-~~ad~~~~i~~~~~~~--~~----------~~~ 132 (537)
||||+|+++|.- +..+++++++.|++|..+.++........ ..--.++.+....... +. ...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 578999998774 78999999999999999975544222111 1111222232111111 10 112
Q ss_pred HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCceeC
Q 009323 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 133 ~~i~~~a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~G 173 (537)
-....+.++.++|+|+..-|+.+- ...-+....+++++-
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~--p~~~aa~~~~~p~~i 119 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSV--PVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhH--HHHHHHHHcCCCEEE
Confidence 233466788999999975444321 122333445666543
No 170
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.74 E-value=8.1 Score=41.58 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=55.6
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
...++|||+|-|..+..+++.+++ |.++++.+...........+.+..+ ++ ....+.+ .++|.|+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~-------~~~~~~~------~~~d~vV 68 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IA-------ALSDSRW------QNLDKIV 68 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-ec-------cCChhHh------hCCCEEE
Confidence 346799999999999999999995 9999887522221111011111111 21 0111111 3589999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~ 178 (537)
...|....++.+ +.+.+.|+++++ ..+.
T Consensus 69 ~SPgI~~~~p~~-~~a~~~gi~v~~-e~el 96 (454)
T PRK01368 69 LSPGIPLTHEIV-KIAKNFNIPITS-DIDL 96 (454)
T ss_pred ECCCCCCCCHHH-HHHHHCCCceec-HHHH
Confidence 887765555544 445678999884 4444
No 171
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.64 E-value=2.5 Score=40.79 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=30.1
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.+.|++||.| .|.++..+++.+.+.|++++++..+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899999 6889999999999999999888654
No 172
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=86.42 E-value=2.5 Score=36.70 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=26.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEe
Q 009323 72 EKILVANR-GEIAVRVIRTAHE-MGIPCVAVY 101 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~-~G~~vv~v~ 101 (537)
+||+|.|. |..+..+++.+.+ .|++++.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v 32 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAV 32 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEE
Confidence 38999998 9999999999999 788877654
No 173
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=86.37 E-value=4 Score=43.55 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=58.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.||+.|.+.+..+..+++.+.++|.+++.+.+....... ..+.++.+. ..|...+.+++++.++|.++.+
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~~~~~~~~---------~~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QKLPVETVV---------IGDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-HhCCcCcEE---------eCCHHHHHHHHhhcCCCEEEEC
Confidence 578999998888999999999999999887655442222 222222222 2466788888888899999854
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009323 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~ 172 (537)
. .-..++.++|++++
T Consensus 381 s-------~~k~~A~~l~ip~i 395 (432)
T TIGR01285 381 S-------HGRALAQRLALPLV 395 (432)
T ss_pred c-------chHHHHHHcCCCEE
Confidence 2 11345667788765
No 174
>PRK08017 oxidoreductase; Provisional
Probab=86.16 E-value=3.5 Score=39.98 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=30.1
Q ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|.|++||.|. |.+|..+++.+.+.|+++++++.+.
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4578999996 9999999999999999998886544
No 175
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=85.87 E-value=2.7 Score=39.81 Aligned_cols=109 Identities=10% Similarity=0.147 Sum_probs=61.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCE--EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE--SVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~--~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
.|+|+|.|-|.++..+++.+.+.|+++++.+.+.+.. ..++++ ...+ +.+++.. ..+|.++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~---~~~~~~~g~~~v----------~~~~l~~----~~~Dv~v 90 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAV---ARAAELFGATVV----------APEEIYS----VDADVFA 90 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHcCCEEE----------cchhhcc----ccCCEEE
Confidence 4789999999999999999999999999764332211 111111 1111 1122222 3699999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
|... ++......+++.+.+++.-... ..+.| ....++|++.||.+.|-
T Consensus 91 p~A~---~~~I~~~~~~~l~~~~v~~~AN--~~~~~-~~~~~~L~~~Gi~~~Pd 138 (200)
T cd01075 91 PCAL---GGVINDDTIPQLKAKAIAGAAN--NQLAD-PRHGQMLHERGILYAPD 138 (200)
T ss_pred eccc---ccccCHHHHHHcCCCEEEECCc--CccCC-HhHHHHHHHCCCEEeCc
Confidence 8732 2222223334444443311111 11222 55677899999999774
No 176
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=85.74 E-value=4.7 Score=43.15 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=56.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHH---cCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~---~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+++++++ .|++++.+..+.. .. ...... + + -+.+.+++.++++++++|.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~-~~-~~~i~g--~-----p---Vlg~~~~l~~~i~~~~id~V 192 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRP-SD-RVEVAG--L-----P---VLGKLDDLVELVRAHRVDEV 192 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCc-cc-ccccCC--C-----c---ccCCHHHHHHHHHhCCCCEE
Confidence 3689999999999999999975 4788887643221 11 111111 1 1 14567889999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHCCCce
Q 009323 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (537)
Q Consensus 148 ~p~~g~~se~--~~~a~~~e~~gi~~ 171 (537)
+-.....++. ....+.|+..|+.+
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V 218 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDV 218 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEE
Confidence 7543221111 24556667777653
No 177
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=85.60 E-value=3 Score=39.71 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=51.0
Q ss_pred EEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccC-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 74 vLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
|||+| .|-+|..+++.+.+.|+.|+.+..............+ +.+.. +..+.+.+.++.+..++|.|+-.-
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-------dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIG-------DLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEES-------ETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEe-------eccccccccccccccCceEEEEee
Confidence 78999 6889999999999999998877644433322111112 23333 367888999999988899988544
Q ss_pred C
Q 009323 152 G 152 (537)
Q Consensus 152 g 152 (537)
+
T Consensus 74 ~ 74 (236)
T PF01370_consen 74 A 74 (236)
T ss_dssp S
T ss_pred c
Confidence 3
No 178
>PRK06182 short chain dehydrogenase; Validated
Probab=85.39 E-value=3.1 Score=40.99 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=46.5
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~-----~~~ 144 (537)
.|++||.| .|.++..+++.+.+.|++|+++..+.+........--..+.. +..+.+.+.+++++ .++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~-------Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSL-------DVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEe-------eCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999 478999999999999999998865433211000000122332 23445555444432 268
Q ss_pred CEEEeCCCc
Q 009323 145 TMLHPGYGF 153 (537)
Q Consensus 145 d~V~p~~g~ 153 (537)
|.++...|.
T Consensus 76 d~li~~ag~ 84 (273)
T PRK06182 76 DVLVNNAGY 84 (273)
T ss_pred CEEEECCCc
Confidence 998876553
No 179
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=85.38 E-value=4.3 Score=41.77 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=45.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC-CCCC-hhh-hc---cC-EEEEcCCCCCCCCCCCHHHHHHHHHHc
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI-DKDA-LHV-KL---AD-ESVCIGEAPSSQSYLLIPNVLSAAISR 142 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~-d~~~-~~~-~~---ad-~~~~i~~~~~~~~~~~~~~i~~~a~~~ 142 (537)
|++|||.| .|.+|..+++.+.+.|++++++.... .... ... .. .+ +++.. +..|.+.+.++.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~ 73 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKV-------DICDRAELARVFTEH 73 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEEC-------CCcChHHHHHHHhhc
Confidence 46899999 48899999999999999866543221 1110 000 11 11 12222 345667777777766
Q ss_pred CCCEEEeCCC
Q 009323 143 GCTMLHPGYG 152 (537)
Q Consensus 143 ~~d~V~p~~g 152 (537)
++|.|+-.-+
T Consensus 74 ~~D~Vih~A~ 83 (355)
T PRK10217 74 QPDCVMHLAA 83 (355)
T ss_pred CCCEEEECCc
Confidence 7998875543
No 180
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.22 E-value=11 Score=36.77 Aligned_cols=121 Identities=19% Similarity=0.237 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHc---CCCEEEeCCCcccccHHHHHHHHHCCCceeCC--C-HHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 129 YLLIPNVLSAAISR---GCTMLHPGYGFLAENAVFVEMCREHGINFIGP--N-PDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 129 ~~~~~~i~~~a~~~---~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp--~-~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
+.|..+.++.+++. +++.+ | +.++++..++.+++.|..++-| + ..+-.-..|+...+.+.+..++|+.-.
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vl-p---yc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 106 LPDPIETLKAAEILVKEGFTVL-P---YCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred ccCHHHHHHHHHHHHHCCCEEE-E---EeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 45777888888887 77655 2 2347889999999999877644 1 111123456777777777778888766
Q ss_pred cCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcC
Q 009323 203 SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (537)
Q Consensus 203 ~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~ 262 (537)
.-+.+.+++.++.+ +|.--|+ -+.++....|+....++|..+...++.++.
T Consensus 182 --gGI~tpeda~~Ame-lGAdgVl------V~SAIt~a~dP~~ma~af~~Av~aGr~a~~ 232 (248)
T cd04728 182 --AGIGTPSDAAQAME-LGADAVL------LNTAIAKAKDPVAMARAFKLAVEAGRLAYL 232 (248)
T ss_pred --CCCCCHHHHHHHHH-cCCCEEE------EChHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999988775 6643332 244566778899999999888877665443
No 181
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.15 E-value=3.3 Score=44.99 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEc
Q 009323 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120 (537)
Q Consensus 68 ~~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i 120 (537)
..+..||+|+|.|.++...+.+|+.+|..|++++.+++......++--.++.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i 214 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL 214 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence 34468999999999999999999999998888866555444444444444434
No 182
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=84.94 E-value=3 Score=43.76 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=68.4
Q ss_pred EEEEcCcHHHHHHHHHHHHcCC--CEEEEecCCCCCChhh----hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 74 ILVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 74 vLi~g~g~~a~~ii~aa~~~G~--~vv~v~~~~d~~~~~~----~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
|||+|.|.++..+++.+.+.+- ++++.+.+.+...... ...-+.+.++ ..|.+.+.++++. +|.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~~l~~~~~~--~dvV 71 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVD-------VNDPESLAELLRG--CDVV 71 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE---------TTTHHHHHHHHTT--SSEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEe-------cCCHHHHHHHHhc--CCEE
Confidence 7999999999999999999874 5666654333211111 0112334443 5677788888754 6999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
+...|.. .+..++++|.+.|++++-++. ....-....+.++++|+.....
T Consensus 72 in~~gp~-~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 72 INCAGPF-FGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp EE-SSGG-GHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSEEE-S
T ss_pred EECCccc-hhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCEEEeC
Confidence 9876643 556788999999999986443 1111222334556788776554
No 183
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=84.92 E-value=3.5 Score=41.61 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=45.3
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
++|||.| .|-+|..+++.+.+.|++|++++.............-+.+.. +..+.+.+.++++ ++|.|+-
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------D~~~~~~l~~~~~--~~d~vi~ 70 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEG-------DLRDPASLRKAVA--GCRALFH 70 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEe-------eCCCHHHHHHHHh--CCCEEEE
Confidence 3799999 588999999999999999999876543221111111122322 3566677777664 5787773
No 184
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=84.52 E-value=7.3 Score=38.66 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=45.4
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH----cC-CCE
Q 009323 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----RG-CTM 146 (537)
Q Consensus 73 kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~----~~-~d~ 146 (537)
+|||.|+ |.+|..+++.+.+.|++|.++..+++.... ...+.+. -++.|.+.+.+..+. .+ +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~-------~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVK-------FDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCcccc-------ccCCCHHHHHHHHhcccCcCCceeE
Confidence 4899995 999999999999999999998765542211 1111222 247787877776642 34 787
Q ss_pred EEe
Q 009323 147 LHP 149 (537)
Q Consensus 147 V~p 149 (537)
|+-
T Consensus 71 v~~ 73 (285)
T TIGR03649 71 VYL 73 (285)
T ss_pred EEE
Confidence 763
No 185
>PRK06057 short chain dehydrogenase; Provisional
Probab=84.42 E-value=4.4 Score=39.45 Aligned_cols=77 Identities=9% Similarity=-0.047 Sum_probs=47.1
Q ss_pred CCCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChh-hhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-----
Q 009323 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS----- 141 (537)
Q Consensus 69 ~~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~-~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~----- 141 (537)
+..++|||.|+ |.++..+++.+.+.|+++++++.+.+..... ..+....+..+ ..+.+.+.++..+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D-------~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTD-------VTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEee-------CCCHHHHHHHHHHHHHHc
Confidence 34689999995 8899999999999999999886443321111 11112333332 4444444444433
Q ss_pred cCCCEEEeCCC
Q 009323 142 RGCTMLHPGYG 152 (537)
Q Consensus 142 ~~~d~V~p~~g 152 (537)
.++|.|+-.-|
T Consensus 78 ~~id~vi~~ag 88 (255)
T PRK06057 78 GSVDIAFNNAG 88 (255)
T ss_pred CCCCEEEECCC
Confidence 25888875544
No 186
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.34 E-value=2.5 Score=44.15 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=44.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
..+|+|+|.|..+..+++.|+++|.+|++++.+..............+.. .+.+.+.+.+.+. .+|.|+.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~-------~~~~~~~l~~~l~--~aDvVI~a 237 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHT-------RYSNAYEIEDAVK--RADLLIGA 237 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEe-------ccCCHHHHHHHHc--cCCEEEEc
Confidence 46799999999999999999999998888754332111111111111211 1344556666653 58888854
No 187
>PRK07577 short chain dehydrogenase; Provisional
Probab=84.24 E-value=7.4 Score=37.09 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=45.0
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHH----HHHHcCCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS----AAISRGCT 145 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~----~a~~~~~d 145 (537)
.|++||.| .|.++..+++.+.+.|++++++..+.... ...+.+..+ ..+.+.+.+ +....++|
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~-----~~~~~~~~D-------~~~~~~~~~~~~~~~~~~~~d 70 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD-----FPGELFACD-------LADIEQTAATLAQINEIHPVD 70 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc-----cCceEEEee-------CCCHHHHHHHHHHHHHhCCCc
Confidence 46899999 47799999999999999999987554331 112333332 334443333 33334789
Q ss_pred EEEeCCC
Q 009323 146 MLHPGYG 152 (537)
Q Consensus 146 ~V~p~~g 152 (537)
.|+-.-|
T Consensus 71 ~vi~~ag 77 (234)
T PRK07577 71 AIVNNVG 77 (234)
T ss_pred EEEECCC
Confidence 8886544
No 188
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=84.23 E-value=3.9 Score=39.12 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
+.++|||.| .|.++..+++.+.+.|++++++..+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 457899999 58899999999999999988886544
No 189
>PRK06483 dihydromonapterin reductase; Provisional
Probab=84.16 E-value=5.7 Score=38.10 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 567999999 57799999999999999999986544
No 190
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=84.04 E-value=5.5 Score=40.97 Aligned_cols=76 Identities=12% Similarity=-0.069 Sum_probs=49.4
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChhh---hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~---~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.|+|||.|+ |-++..+++.+.+.|++|+++..+........ ...+....+ .-+..+.+.+.++.++.++|.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-----FGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEE-----EccCCCHHHHHHHHhhcCCCE
Confidence 478999995 88999999999999999998864433211110 111111111 013456778888888778898
Q ss_pred EEeCC
Q 009323 147 LHPGY 151 (537)
Q Consensus 147 V~p~~ 151 (537)
|+-.-
T Consensus 79 vih~A 83 (349)
T TIGR02622 79 VFHLA 83 (349)
T ss_pred EEECC
Confidence 88543
No 191
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.98 E-value=3.8 Score=39.94 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=29.1
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
||++||.| .|.++..+++.+.+.|++|++++.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 47899999 58899999999999999999986543
No 192
>PRK12742 oxidoreductase; Provisional
Probab=83.88 E-value=5.3 Score=38.17 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCC--hhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc-C
Q 009323 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-G 143 (537)
Q Consensus 68 ~~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~--~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~-~ 143 (537)
..+.|++||.| .|.++..+++.+.+.|++++++........ ......-..+.. +..+.+.+.++..+. +
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQT-------DSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEec-------CCCCHHHHHHHHHHhCC
Confidence 34468999999 588999999999999999887643211100 000111122322 244556666666554 4
Q ss_pred CCEEEeCCC
Q 009323 144 CTMLHPGYG 152 (537)
Q Consensus 144 ~d~V~p~~g 152 (537)
+|.++-.-|
T Consensus 76 id~li~~ag 84 (237)
T PRK12742 76 LDILVVNAG 84 (237)
T ss_pred CcEEEECCC
Confidence 788875544
No 193
>PRK12829 short chain dehydrogenase; Provisional
Probab=83.75 E-value=3.2 Score=40.48 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=47.5
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhh-hccC---EEEEcCCCCCCCCCCCHHHHHHHHHH--
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLAD---ESVCIGEAPSSQSYLLIPNVLSAAIS-- 141 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~-~~ad---~~~~i~~~~~~~~~~~~~~i~~~a~~-- 141 (537)
.+.+++||.| .|.++..+++.+.+.|++|+++..+........ ...+ ..+.. +..+.+.+.++..+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~ 81 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVA-------DVADPAQVERVFDTAV 81 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEc-------cCCCHHHHHHHHHHHH
Confidence 3457999999 578999999999999999988865432111111 1111 22322 24455555544433
Q ss_pred ---cCCCEEEeCCC
Q 009323 142 ---RGCTMLHPGYG 152 (537)
Q Consensus 142 ---~~~d~V~p~~g 152 (537)
.++|+|+-..|
T Consensus 82 ~~~~~~d~vi~~ag 95 (264)
T PRK12829 82 ERFGGLDVLVNNAG 95 (264)
T ss_pred HHhCCCCEEEECCC
Confidence 36899886554
No 194
>PRK06398 aldose dehydrogenase; Validated
Probab=83.72 E-value=9.3 Score=37.33 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|++|++++.+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 57899999 5789999999999999999988644
No 195
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.71 E-value=5.2 Score=41.23 Aligned_cols=122 Identities=10% Similarity=0.064 Sum_probs=62.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCC-CEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~-~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.++|||+|.|..+..+++.+-++|+ ++++++ .|.... ..+..+.+.-.. .....-.-.+.+.+.+++.+.+.-+-
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD--~D~ve~-sNL~RQ~l~~~~-d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIAD--RDYVEW-SNLQRQQLYTEE-DAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc--CCcccc-cccCccccccHH-HccCCccHHHHHHHHHHHHCCCcEEE
Confidence 4689999999999999999999999 555663 332211 112222221000 00000112344445555555544332
Q ss_pred CC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 150 GY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 150 ~~-g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
.+ ...+ ...+.+++....+.+.+.+. ...+....+++.+.|+|..-.
T Consensus 100 ~~~~~~~-~~~~~~~~~~~DlVid~~D~-----~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 100 PVVTDVT-VEELEELVKEVDLIIDATDN-----FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred EEeccCC-HHHHHHHhcCCCEEEEcCCC-----HHHHHHHHHHHHHcCCCEEEE
Confidence 21 1111 12233445555555544322 223455667788899887643
No 196
>PRK07326 short chain dehydrogenase; Provisional
Probab=83.67 E-value=3.4 Score=39.58 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=28.5
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.+++||.| .|.++..+++.+.+.|++|+++..+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 47899998 5889999999999999999888544
No 197
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=83.53 E-value=9.1 Score=36.52 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=54.4
Q ss_pred CcEEEEEcCcHHHHHHHHH--HHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVIRT--AHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~a--a~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|+|+|.|.++..+++. ....|++++.+..+ ++......... +.+ ...+.+.+++++.++|.|+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~-d~~~~~~~i~g--~~v---------~~~~~l~~li~~~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV-DPEKIGTKIGG--IPV---------YHIDELEEVVKENDIEIGI 151 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC-ChhhcCCEeCC--eEE---------cCHHHHHHHHHHCCCCEEE
Confidence 4689999999999998886 34578998877532 32211111111 111 2346677888888899888
Q ss_pred eCCCcccccHHHHHHHHHCCCcee
Q 009323 149 PGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
-..... ........+.+.|+..+
T Consensus 152 Ia~P~~-~~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 152 LTVPAE-AAQEVADRLVEAGIKGI 174 (213)
T ss_pred EeCCch-hHHHHHHHHHHcCCCEE
Confidence 554221 22345566667776544
No 198
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.49 E-value=2.9 Score=44.73 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=30.1
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
|+|+|+|.|.++..+++.+.+.|+++++++.+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4899999999999999999999999999965443
No 199
>PRK08219 short chain dehydrogenase; Provisional
Probab=83.28 E-value=3 Score=39.53 Aligned_cols=75 Identities=9% Similarity=0.017 Sum_probs=46.4
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhh-hccC-EEEEcCCCCCCCCCCCHHHHHHHHHHc-CCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLAD-ESVCIGEAPSSQSYLLIPNVLSAAISR-GCT 145 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~-~~ad-~~~~i~~~~~~~~~~~~~~i~~~a~~~-~~d 145 (537)
|+|++||.| .|.++..+++.+.+. ++|+++..+........ ...+ +.+.. +..+.+.+.++.... ++|
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id 73 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPV-------DLTDPEAIAAAVEQLGRLD 73 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEec-------CCCCHHHHHHHHHhcCCCC
Confidence 467899999 588999999999888 99998864432111011 1111 12222 345566776666543 588
Q ss_pred EEEeCCC
Q 009323 146 MLHPGYG 152 (537)
Q Consensus 146 ~V~p~~g 152 (537)
.|+-.-|
T Consensus 74 ~vi~~ag 80 (227)
T PRK08219 74 VLVHNAG 80 (227)
T ss_pred EEEECCC
Confidence 8885543
No 200
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.11 E-value=5.7 Score=42.96 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=53.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCE---EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE---SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~---~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
.+||+|+|.|.++..+++.+.+.|+.|.+.+.+.. . ...+.++ .+..+ ..+.+.+ .++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~--~-~~~~l~~~gi~~~~~-------~~~~~~~------~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET--A-RHKLIEVTGVADIST-------AEASDQL------DSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH--H-HHHHHHhcCcEEEeC-------CCchhHh------cCCCEE
Confidence 47899999999999999999999998777643221 1 1122121 12111 1111222 357888
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeC
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~G 173 (537)
+-..|....++.+ ..+.+.|+++++
T Consensus 79 V~Spgi~~~~p~~-~~a~~~gi~v~~ 103 (473)
T PRK00141 79 VTSPGWRPDSPLL-VDAQSQGLEVIG 103 (473)
T ss_pred EeCCCCCCCCHHH-HHHHHCCCceee
Confidence 8766655455554 455678999874
No 201
>PLN02240 UDP-glucose 4-epimerase
Probab=83.11 E-value=6.2 Score=40.45 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=48.2
Q ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCCh-hhhc-------cC--EEEEcCCCCCCCCCCCHHHHHHH
Q 009323 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKL-------AD--ESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 70 ~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~-~~~~-------ad--~~~~i~~~~~~~~~~~~~~i~~~ 138 (537)
+.++|||.|+ |.++..+++.+.+.|++|++++........ .... .. +.+.. +..+.+.+.++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~l~~~ 76 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKV-------DLRDKEALEKV 76 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEec-------CcCCHHHHHHH
Confidence 3579999995 889999999999999999888532211100 0000 00 12222 35677777777
Q ss_pred HHHcCCCEEEeCC
Q 009323 139 AISRGCTMLHPGY 151 (537)
Q Consensus 139 a~~~~~d~V~p~~ 151 (537)
.++.++|.|+-.-
T Consensus 77 ~~~~~~d~vih~a 89 (352)
T PLN02240 77 FASTRFDAVIHFA 89 (352)
T ss_pred HHhCCCCEEEEcc
Confidence 7666889887543
No 202
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.07 E-value=3.8 Score=39.87 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=30.5
Q ss_pred CCCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 69 ~~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
++.|++||.|+ |.++..+++.+.+.|++++++..+.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 34688999994 8899999999999999999886544
No 203
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=83.02 E-value=6.7 Score=40.08 Aligned_cols=73 Identities=4% Similarity=-0.172 Sum_probs=48.4
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCC--hhhhcc-------C--EEEEcCCCCCCCCCCCHHHHHHH
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA-------D--ESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~--~~~~~a-------d--~~~~i~~~~~~~~~~~~~~i~~~ 138 (537)
.|+|||.|+ |-++..+++.+.+.|++|+++....+... ....+. . +.+.. +..|.+.+.++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~ 78 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYG-------DLSDASSLRRW 78 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEe-------cCCCHHHHHHH
Confidence 478999995 88999999999999999998864332110 001111 0 12222 35677788787
Q ss_pred HHHcCCCEEEeC
Q 009323 139 AISRGCTMLHPG 150 (537)
Q Consensus 139 a~~~~~d~V~p~ 150 (537)
.+..++|.|+-.
T Consensus 79 ~~~~~~d~Vih~ 90 (340)
T PLN02653 79 LDDIKPDEVYNL 90 (340)
T ss_pred HHHcCCCEEEEC
Confidence 777778988744
No 204
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=82.96 E-value=45 Score=31.94 Aligned_cols=140 Identities=17% Similarity=0.096 Sum_probs=86.7
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
|.+....+|--+.-.+-.|-+.|++|+.+.+-...+. |.+-. ...|.+.+...|+..++..+.-..
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~------dS~m~--------H~~n~~~~~~~Ae~~gi~l~~~~~ 67 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENG------DSYMF--------HTPNLELAELQAEAMGIPLVTFDT 67 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCC------Ceeee--------eccchHHHHHHHHhcCCceEEEec
Confidence 4444444555556666677789999876543222111 11111 134667777777778877665432
Q ss_pred -C-cccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEec
Q 009323 152 -G-FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (537)
Q Consensus 152 -g-~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~ 229 (537)
| ...|...++++++..++..+ ..-++..--.|.+...+|+++|+.+-.. ..-.|.+++....-+.||-++|=.+
T Consensus 68 ~g~~e~eve~L~~~l~~l~~d~i--v~GaI~s~yqk~rve~lc~~lGl~~~~P--LWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 68 SGEEEREVEELKEALRRLKVDGI--VAGAIASEYQKERVERLCEELGLKVYAP--LWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred CccchhhHHHHHHHHHhCcccEE--EEchhhhHHHHHHHHHHHHHhCCEEeec--ccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 2 11233567777777775544 5667888889999999999999887544 3356777776666677887654433
No 205
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=82.93 E-value=5.6 Score=42.88 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=56.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHH---cCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~---~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+++++++ +|++++.+..+ ++.. . ..+ .-+.+.+++.++++++++|.|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDd-d~~~------g--~~V------pvlG~~~dL~~~v~~~~IdeV 207 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHD-PKPG------G--VSN------DWAGNLQQLVEDAKAGKIHNV 207 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeC-Cccc------c--CCC------CcCCCHHHHHHHHHhCCCCEE
Confidence 4679999999999999999976 47888876532 2110 0 001 124577889999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHCCCce
Q 009323 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (537)
Q Consensus 148 ~p~~g~~se~--~~~a~~~e~~gi~~ 171 (537)
+-.....++. .++.+.|+..++.+
T Consensus 208 iIAip~~~~~~l~ell~~~~~~~v~V 233 (463)
T PRK10124 208 YIAMSMCDGARVKKLVRQLADTTCSV 233 (463)
T ss_pred EEeCCCcchHHHHHHHHHHHHcCCeE
Confidence 8654322211 34455666777643
No 206
>PRK08264 short chain dehydrogenase; Validated
Probab=82.79 E-value=9.1 Score=36.61 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=47.8
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCC-CEEEEecCCCCCChhhhccCE--EEEcCCCCCCCCCCCHHHHHHHHHHc-CCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADE--SVCIGEAPSSQSYLLIPNVLSAAISR-GCT 145 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~-~vv~v~~~~d~~~~~~~~ad~--~~~i~~~~~~~~~~~~~~i~~~a~~~-~~d 145 (537)
.+++||.| .|.++..+++.+.+.|+ .|+++..+.+.... .... .+.. +..+.+.+.++.+.. .+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQL-------DVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEe-------cCCCHHHHHHHHHhcCCCC
Confidence 46899999 58899999999999999 88888654432211 1112 2222 345566666666554 478
Q ss_pred EEEeCCCc
Q 009323 146 MLHPGYGF 153 (537)
Q Consensus 146 ~V~p~~g~ 153 (537)
+|+-..|.
T Consensus 76 ~vi~~ag~ 83 (238)
T PRK08264 76 ILVNNAGI 83 (238)
T ss_pred EEEECCCc
Confidence 88865554
No 207
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.75 E-value=6.2 Score=34.90 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=25.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCC-EEEE
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIP-CVAV 100 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~-vv~v 100 (537)
||+|+|.|.++..+++.+-+.|+. +.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~iv 29 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLI 29 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 589999999999999999999996 5555
No 208
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=82.72 E-value=5.2 Score=38.55 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=29.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++|||+|+|..|.+=++.+.+.|-++.++..+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 368999999999999999999999999999543
No 209
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=82.67 E-value=31 Score=30.23 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHH
Q 009323 86 VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCR 165 (537)
Q Consensus 86 ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~~se~~~~a~~~e 165 (537)
|++.|++.|+++++|.+..-... .... -+.+.++..... - -..|++.++ .-|.|+. -+..+|..+.
T Consensus 2 i~~~a~r~~i~vi~Van~~h~~~-~~~~-~~~i~Vd~g~Da--a--D~~I~~~~~--~gDiVIT------qDigLA~~~l 67 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANYSHRLP-RSPY-VEMIVVDSGFDA--A--DFYIVNHAK--PGDIVIT------QDIGLASLLL 67 (130)
T ss_pred HHHHHHHHCCEEEEEeCCCccCC-CCCC-eEEEEECCCCCh--H--HHHHHHcCC--CCCEEEE------CCHHHHHHHH
Confidence 67899999999999974432222 1122 234455422221 1 125666664 4788885 3455777777
Q ss_pred HCCCceeCCC-----HHHHHHhcCHHHHHHHHHHCCCCC
Q 009323 166 EHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 166 ~~gi~~~Gp~-----~~~i~~~~dK~~~r~~l~~~Gipv 199 (537)
..|..++.|. .+.|....+...+.+-+++.|..+
T Consensus 68 ~Kga~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~~~ 106 (130)
T PF02639_consen 68 AKGAYVLNPRGKEYTKENIDELLAMRHLMAKLRRAGKRT 106 (130)
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7777666553 566666666666666777888754
No 210
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=82.64 E-value=7.2 Score=41.86 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=55.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHH---cCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~---~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+++++++ .|++++.+..+ +.... ..... +. -+.+.+++.++++++++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd-~~~~~-~~~~g--vp--------Vlg~~~dl~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDD-RPDAR-TGVRG--VP--------VLGKLDDLEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeC-CCccc-cccCC--CC--------ccCCHHHHHHHHHhcCCCEE
Confidence 4689999999999999999976 47888876532 21111 11111 11 14567889999999999988
Q ss_pred EeCCCcccc--cHHHHHHHHHCCCc
Q 009323 148 HPGYGFLAE--NAVFVEMCREHGIN 170 (537)
Q Consensus 148 ~p~~g~~se--~~~~a~~~e~~gi~ 170 (537)
+-.....+. ..++.+.|+..|+.
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~ 220 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVD 220 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCE
Confidence 855322111 13444556666664
No 211
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.62 E-value=5 Score=38.68 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=47.8
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChh-hhcc--C--EEEEcCCCCCCCCCCCHHHHHHHHHHc--
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLA--D--ESVCIGEAPSSQSYLLIPNVLSAAISR-- 142 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~-~~~a--d--~~~~i~~~~~~~~~~~~~~i~~~a~~~-- 142 (537)
.+++||.| .|.++..+++.+.+.|++|+++..+.+..... ..+. . ..+.. +..+.+.+.++.++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAA-------DVSDEADVEAAVAAALE 77 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEEC-------CCCCHHHHHHHHHHHHH
Confidence 46899999 57899999999999999998886554321111 1111 1 12222 245566665555443
Q ss_pred ---CCCEEEeCCCc
Q 009323 143 ---GCTMLHPGYGF 153 (537)
Q Consensus 143 ---~~d~V~p~~g~ 153 (537)
++|+|+-.-|.
T Consensus 78 ~~~~~d~vi~~ag~ 91 (251)
T PRK07231 78 RFGSVDILVNNAGT 91 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 68988866543
No 212
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.51 E-value=13 Score=36.31 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=27.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
..||+|+|.|.++..+++.+.+.|+.-+.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lv 54 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLL 54 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence 4689999999999999999999999766553
No 213
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.48 E-value=14 Score=35.96 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHc---CCCEEEeCCCcccccHHHHHHHHHCCCceeCC--C-HHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 129 YLLIPNVLSAAISR---GCTMLHPGYGFLAENAVFVEMCREHGINFIGP--N-PDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 129 ~~~~~~i~~~a~~~---~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp--~-~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
+.|....++.+++. ++..+ | +.++++..++.++++|..++-| + -.+-.-..|+...+.+.+..++|+.-.
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vl-p---yc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 106 LPDPIETLKAAEILVKEGFVVL-P---YCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CcCHHHHHHHHHHHHHCCCEEE-E---EeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 45788888888887 77655 3 2347889999999999877644 1 111123456777777777778888766
Q ss_pred cCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcC
Q 009323 203 SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (537)
Q Consensus 203 ~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~ 262 (537)
.-+.+.+++.++.+ +|.--|+ -+.++....|+....++|..+...++.++.
T Consensus 182 --aGI~tpeda~~Ame-lGAdgVl------V~SAItka~dP~~ma~af~~Av~aGr~a~~ 232 (250)
T PRK00208 182 --AGIGTPSDAAQAME-LGADAVL------LNTAIAVAGDPVAMARAFKLAVEAGRLAYL 232 (250)
T ss_pred --CCCCCHHHHHHHHH-cCCCEEE------EChHhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67889999988775 5653332 244566778899999999888777665443
No 214
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=82.47 E-value=3.7 Score=43.72 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=58.2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCC----CChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK----DALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~----~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 145 (537)
..||+.|.+.+.....++..++++|.+++++.+.-.. ......+.+..+.++ ..|..++.+++++.++|
T Consensus 299 ~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~e~~~~i~~~~pD 371 (421)
T cd01976 299 EGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYD-------DVTHYELEEFVKRLKPD 371 (421)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEc-------CCCHHHHHHHHHHhCCC
Confidence 3689999987766777788999999999987542111 111112233333332 34678888999999999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 146 ~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
.++.+.- -...++++|+|+.
T Consensus 372 liig~~~-------~~~~a~k~giP~~ 391 (421)
T cd01976 372 LIGSGIK-------EKYVFQKMGIPFR 391 (421)
T ss_pred EEEecCc-------chhhhhhcCCCeE
Confidence 9995431 2245677888873
No 215
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=82.43 E-value=21 Score=35.07 Aligned_cols=109 Identities=21% Similarity=0.138 Sum_probs=61.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcC-CCEEEEecCCCCCC-------------h----------hhhccCEEEEcCCCCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDA-------------L----------HVKLADESVCIGEAPS 125 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G-~~vv~v~~~~d~~~-------------~----------~~~~ad~~~~i~~~~~ 125 (537)
+.||.|+| .|..+..+++++.+.. ++++..-...+... . ....+|-.+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT---- 77 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT---- 77 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC----
Confidence 56899999 5999999999999875 55554322221111 0 011223333221
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEeCCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHH
Q 009323 126 SQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKS 186 (537)
Q Consensus 126 ~~~~~~~~~i~~~a~~~~~d~V~p~~g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~ 186 (537)
...-....+++|.+++...|+-+.||..|. ..+.++.+..++- +.|+...=..+..|.
T Consensus 78 --~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv-~a~NfSiGvnll~~l 136 (266)
T COG0289 78 --TPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVV-IAPNFSLGVNLLFKL 136 (266)
T ss_pred --CchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEE-EeccchHHHHHHHHH
Confidence 112234567778888888888888886665 3444555554443 345554444444443
No 216
>PRK12828 short chain dehydrogenase; Provisional
Probab=82.38 E-value=5.6 Score=37.86 Aligned_cols=34 Identities=6% Similarity=0.003 Sum_probs=29.4
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 47899999 58899999999999999999886544
No 217
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=82.28 E-value=4.8 Score=42.88 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=59.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhc---------cCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL---------ADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~---------ad~~~~i~~~~~~~~~~~~~~i~~~a~~ 141 (537)
.||+.|.+....+..+++.+.++|.+++.+.+..+......++ ..+.+. -.|..++.+.+++
T Consensus 299 gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~d~~el~~~i~~ 369 (428)
T cd01965 299 GKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVF---------VGDLWDLESLAKE 369 (428)
T ss_pred CCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEE---------CCCHHHHHHHhhc
Confidence 5899999988899999999999999998776543322211111 111221 2477888889998
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 142 ~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
.++|.|+... .....++++|++++
T Consensus 370 ~~pdliig~~-------~~~~~a~~~~ip~i 393 (428)
T cd01965 370 EPVDLLIGNS-------HGRYLARDLGIPLV 393 (428)
T ss_pred cCCCEEEECc-------hhHHHHHhcCCCEE
Confidence 9999998542 12355667788876
No 218
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.17 E-value=4.4 Score=43.87 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=57.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh--hhcc--CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~--~~~a--d~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.++|+|+|.|.++..+++.+++.|++|++++......... ..+. .-.+..+. .. . ....+|.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~------~~--~------~~~~~D~ 81 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGP------GP--T------LPEDTDL 81 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECC------Cc--c------ccCCCCE
Confidence 5689999999999999999999999998885332111111 1121 11222221 00 0 1245899
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~ 178 (537)
|+-..|....++ +...+++.|+++++ ..+.
T Consensus 82 Vv~s~Gi~~~~~-~~~~a~~~gi~v~~-~~e~ 111 (480)
T PRK01438 82 VVTSPGWRPDAP-LLAAAADAGIPVWG-EVEL 111 (480)
T ss_pred EEECCCcCCCCH-HHHHHHHCCCeecc-hHHH
Confidence 988777654454 44555778999874 4444
No 219
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=82.02 E-value=4.3 Score=41.43 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=57.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++..+++.|+.+|.+ +++++++.+......++ +|..+.. . +.. .+.+.++....++|.|
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~----~--~~~-~~~~~~~~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINS----G--QDD-VQEIRELTSGAGADVA 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcC----C--cch-HHHHHHHhCCCCCCEE
Confidence 367999999999999999999999999 88775433322222222 3433321 1 111 4555555544579999
Q ss_pred EeCCCcccccHHHHHHHHHCCCc-eeCC
Q 009323 148 HPGYGFLAENAVFVEMCREHGIN-FIGP 174 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~-~~Gp 174 (537)
+-..|...-.....+.+...|.- ++|.
T Consensus 236 id~~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECSGNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 97665321112334555555543 3453
No 220
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=82.02 E-value=6.6 Score=40.22 Aligned_cols=72 Identities=8% Similarity=-0.145 Sum_probs=47.9
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCC--hhhhcc----------CEEEEcCCCCCCCCCCCHHHHHHH
Q 009323 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA----------DESVCIGEAPSSQSYLLIPNVLSA 138 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~--~~~~~a----------d~~~~i~~~~~~~~~~~~~~i~~~ 138 (537)
|+|||.|+ |-+|..+++.+.+.|++|++++...+... ....+. -+.+.. +..|.+.+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYG-------DLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEe-------ccCCHHHHHHH
Confidence 58999995 88999999999999999998864432110 001110 012221 35677788888
Q ss_pred HHHcCCCEEEeC
Q 009323 139 AISRGCTMLHPG 150 (537)
Q Consensus 139 a~~~~~d~V~p~ 150 (537)
.+..++|.|+-.
T Consensus 74 ~~~~~~d~ViH~ 85 (343)
T TIGR01472 74 IDEIKPTEIYNL 85 (343)
T ss_pred HHhCCCCEEEEC
Confidence 887778987743
No 221
>PRK06194 hypothetical protein; Provisional
Probab=82.02 E-value=6 Score=39.23 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=29.2
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
..+++||.| .|.++..+++.+.+.|++|++++.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357899999 5789999999999999999988643
No 222
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.98 E-value=4.2 Score=39.02 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.8
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEE-ecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV-YST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v-~~~ 103 (537)
|++++||.| .|.++..+++.+.+.|++++++ ..+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~ 39 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN 39 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 457899999 4889999999999999999887 443
No 223
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=81.90 E-value=4.5 Score=40.68 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=44.0
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
|||||.|+ |-+|..+++.+.+.| +|++++.... .+. .+..|.+.+.++.+..++|.|+-.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------~~~-------~Dl~d~~~~~~~~~~~~~D~Vih~ 61 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-----------DYC-------GDFSNPEGVAETVRKIRPDVIVNA 61 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-----------ccc-------CCCCCHHHHHHHHHhcCCCEEEEC
Confidence 37999995 999999999999999 7777642110 111 135677888888887789988843
No 224
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=81.81 E-value=7.2 Score=41.97 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=59.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh----hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~----~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.....+++.++++|.+++.+.+........ ..+.+..+.++ ..|...+.+.+++.++|.
T Consensus 326 Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~-------~~d~~e~~~~i~~~~pDl 398 (456)
T TIGR01283 326 GKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLD-------DANPRELLKLLLEYKADL 398 (456)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 5788888877888999999999999999875432211111 12233444332 247889999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
++.+. .....+.++|++++
T Consensus 399 ~ig~~-------~~~~~a~k~giP~i 417 (456)
T TIGR01283 399 LIAGG-------KERYTALKLGIPFC 417 (456)
T ss_pred EEEcc-------chHHHHHhcCCCEE
Confidence 98532 11234457888876
No 225
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=81.79 E-value=46 Score=32.57 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=84.1
Q ss_pred CHHHHHHHHHH---cCCCEEEeCCCcccccHHHHHHHHHCCCcee---CCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC
Q 009323 131 LIPNVLSAAIS---RGCTMLHPGYGFLAENAVFVEMCREHGINFI---GPNPDSIRIMGDKSTARETMKNAGVPTVPGSD 204 (537)
Q Consensus 131 ~~~~i~~~a~~---~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~---Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~ 204 (537)
|..+.+++++. .++ .|+| +.+.++.+++.+++.|...+ |.+-.+-.-..|+...+.+.+...+|+.-.
T Consensus 122 D~~etl~Aae~Lv~eGF-~VlP---Y~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivd-- 195 (267)
T CHL00162 122 DPIGTLKAAEFLVKKGF-TVLP---YINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIID-- 195 (267)
T ss_pred ChHHHHHHHHHHHHCCC-EEee---cCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEe--
Confidence 34445544443 455 4566 45588999999999997543 444555566789999999999999998766
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhc
Q 009323 205 GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF 261 (537)
Q Consensus 205 ~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~ 261 (537)
.-+.+.+++..+.+ +|.--|+= ..+|.+..|+.++..+++.+...++.++
T Consensus 196 AGIgt~sDa~~AmE-lGaDgVL~------nSaIakA~dP~~mA~a~~~AV~AGR~A~ 245 (267)
T CHL00162 196 AGIGTPSEASQAME-LGASGVLL------NTAVAQAKNPEQMAKAMKLAVQAGRLAY 245 (267)
T ss_pred CCcCCHHHHHHHHH-cCCCEEee------cceeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 56788888877664 66543332 3567788999999999998877665443
No 226
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=81.61 E-value=5.4 Score=36.10 Aligned_cols=89 Identities=10% Similarity=0.134 Sum_probs=48.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHH---cCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 72 EKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~---~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
++.++++.+..+..+++.+++ .|++++.+..+. +........+..+ ..+.+++.+.++++++|-|+
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~-~~~~~~~~~~~~~----------lg~~~~l~~~~~~~~id~v~ 146 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDD-PSDRGPEIDGVPV----------LGDLDDLPELVREHDIDEVI 146 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S--GGGTT-EETTEEE----------E--GGGHHHHHHHHT--EEE
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCc-hhhccCcccCcee----------EcCHHHHHHHHHhCCCCEEE
Confidence 445777777878777777766 799988775333 2222222223222 23567899999999999988
Q ss_pred eCCCccccc--HHHHHHHHHCCCce
Q 009323 149 PGYGFLAEN--AVFVEMCREHGINF 171 (537)
Q Consensus 149 p~~g~~se~--~~~a~~~e~~gi~~ 171 (537)
-......+. ..+.+.|++.|+.+
T Consensus 147 ial~~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 147 IALPWSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp E--TTS-HHHHHHHHHHHHTTT-EE
T ss_pred EEcCccCHHHHHHHHHHHHhCCCEE
Confidence 654322111 35667777777754
No 227
>PRK07454 short chain dehydrogenase; Provisional
Probab=81.58 E-value=4.7 Score=38.77 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=29.7
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+|++||.| .|.++..+++.+.+.|++|+++..+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 48899999999999999999886543
No 228
>PRK07236 hypothetical protein; Provisional
Probab=81.19 E-value=3 Score=43.61 Aligned_cols=34 Identities=6% Similarity=-0.108 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
++.++|+|+|+|..+..++..+++.|++|+++..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 5567999999999999999999999999999953
No 229
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.02 E-value=14 Score=42.80 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=57.4
Q ss_pred CcEEEEEcCcHHHHHH-HHHHHHcCCCEEEEecCCCCCChhhhcc--CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~i-i~aa~~~G~~vv~v~~~~d~~~~~~~~a--d~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
+++|+|+|-|.++... ++.+++.|++|++.+..... ....+. .-.+..+ . +.+.+ .++|.|
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~--~~~~L~~~gi~~~~g-------~-~~~~~------~~~d~v 67 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGK--TVEKLKAKGARFFLG-------H-QEEHV------PEDAVV 67 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCCh--HHHHHHHCCCEEeCC-------C-CHHHc------CCCCEE
Confidence 5689999999999997 99999999999987533221 111221 1122222 1 11111 357888
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i 179 (537)
+-..|....++.+.. +.+.|+++++ ..+.+
T Consensus 68 V~SpgI~~~~p~~~~-a~~~gi~v~~-~~el~ 97 (809)
T PRK14573 68 VYSSSISKDNVEYLS-AKSRGNRLVH-RAELL 97 (809)
T ss_pred EECCCcCCCCHHHHH-HHHCCCcEEe-HHHHH
Confidence 877776656666544 4668898884 55554
No 230
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=81.00 E-value=8.1 Score=39.31 Aligned_cols=72 Identities=11% Similarity=-0.036 Sum_probs=46.1
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChh----hhcc---CEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLA---DESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~----~~~a---d~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 143 (537)
+||||.| .|-++..+++.+.+.|++|+++.......... .... .+.+.. +..+.+.+.++....+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEG-------DIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEc-------cCCCHHHHHHHHhcCC
Confidence 3799999 59999999999999999999885322111100 0111 112222 3456677777776667
Q ss_pred CCEEEeC
Q 009323 144 CTMLHPG 150 (537)
Q Consensus 144 ~d~V~p~ 150 (537)
+|+|+-.
T Consensus 74 ~d~vvh~ 80 (338)
T PRK10675 74 IDTVIHF 80 (338)
T ss_pred CCEEEEC
Confidence 9988754
No 231
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=80.98 E-value=2.9 Score=38.45 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=28.1
Q ss_pred CcEEEEEcCcHH-HHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEI-AVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~-a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++|||+|.|++ +..+++.+.+.|..++++...
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 589999999996 777999999999987777543
No 232
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=80.92 E-value=3.9 Score=39.07 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.|+|||+|+|..|.+=++.+-+.|-+++++..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~ 43 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSP 43 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcC
Confidence 47899999999999999999999999999843
No 233
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=80.87 E-value=14 Score=39.64 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=66.0
Q ss_pred CcEEEEEcC----cHHHHHHHHHHHHcCC--CEEEEecCCCCC---Chhhh------ccCEEEEcCCCCCCCCCCCHHHH
Q 009323 71 QEKILVANR----GEIAVRVIRTAHEMGI--PCVAVYSTIDKD---ALHVK------LADESVCIGEAPSSQSYLLIPNV 135 (537)
Q Consensus 71 ~~kvLi~g~----g~~a~~ii~aa~~~G~--~vv~v~~~~d~~---~~~~~------~ad~~~~i~~~~~~~~~~~~~~i 135 (537)
.++|.|+|. +..+.++++.+++.|+ +++.|++..+.. ..+.. -.|-.+..- .......+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~v------p~~~~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVV------PAKYVPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEec------CHHHHHHH
Confidence 468999997 4479999999999998 688885443211 01111 123333221 12234556
Q ss_pred HHHHHHcCCCEEEe-CCCcccc-------cHHHHHHHHHCCCceeCCCHHHHHHhcCH
Q 009323 136 LSAAISRGCTMLHP-GYGFLAE-------NAVFVEMCREHGINFIGPNPDSIRIMGDK 185 (537)
Q Consensus 136 ~~~a~~~~~d~V~p-~~g~~se-------~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK 185 (537)
++.|.+.++..++- ..||... ...+.+.+++.|++++||+.--+....++
T Consensus 81 l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~~ 138 (447)
T TIGR02717 81 VEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIK 138 (447)
T ss_pred HHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCCC
Confidence 66666678887653 2333211 13566777889999999986665555554
No 234
>PRK05865 hypothetical protein; Provisional
Probab=80.83 E-value=20 Score=41.63 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=67.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
|||||.|+ |-++..+++.+.+.|++|+++........ ...-+.+.. +..+.+.+.++.+ ++|.|+-.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~---~~~v~~v~g-------DL~D~~~l~~al~--~vD~VVHl 68 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW---PSSADFIAA-------DIRDATAVESAMT--GADVVAHC 68 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc---ccCceEEEe-------eCCCHHHHHHHHh--CCCEEEEC
Confidence 37999994 99999999999999999998864321110 000122322 3556667766664 58887755
Q ss_pred CCcccc----c----HHHHHHHHHCCC-ceeCCCHHHHHHhcCHHHHHHHHHHCCCCC
Q 009323 151 YGFLAE----N----AVFVEMCREHGI-NFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~~se----~----~~~a~~~e~~gi-~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipv 199 (537)
-+.... | ..+.+++.+.|+ +++..|... |..+.+++.+.|+++
T Consensus 69 Aa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~ 120 (854)
T PRK05865 69 AWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEW 120 (854)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCE
Confidence 332111 1 134456666665 333333322 777778888888876
No 235
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.83 E-value=7.9 Score=37.32 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
++.+++||.|+ |.++..+++.+.+.|++|+++..+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 33578999994 889999999999999999887543
No 236
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=80.81 E-value=5.4 Score=40.93 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEec
Q 009323 72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVYS 102 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~~-G~~vv~v~~ 102 (537)
|+|||.|+ |-+|..+++.+.+. |++|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 58999995 99999999999886 799998853
No 237
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.67 E-value=8.2 Score=37.75 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=29.3
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.|+ +.++..+++.+.+.|++|++++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999994 7899999999999999999886543
No 238
>PRK06180 short chain dehydrogenase; Provisional
Probab=80.64 E-value=6.4 Score=38.94 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=29.5
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
++++||.| .|.++..+++.+.+.|++|+++..+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence 57899999 58899999999999999999986544
No 239
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=80.58 E-value=3.1 Score=39.95 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.+.+||+|.|-|..+..+++.+.++|..++.+.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vs 53 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVS 53 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 346899999999999999999999999888874
No 240
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.39 E-value=12 Score=40.55 Aligned_cols=93 Identities=12% Similarity=0.016 Sum_probs=58.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh-hhccCE-EEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADE-SVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~-~~~ad~-~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
.|||+|+|-|..+..+++.|++.|.++++.+.+....... .++.+. .+..+ ..+.+.+ .++|.|+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~------~~~d~vV 74 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVET-------EASAQRL------AAFDVVV 74 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeC-------CCChHHc------cCCCEEE
Confidence 5789999999999999999999999999886432222111 122111 11111 1122222 3589999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~ 178 (537)
...|....++.+ +.+.+.|+++++ ..+.
T Consensus 75 ~SpgI~~~~p~~-~~a~~~~i~i~~-~~el 102 (468)
T PRK04690 75 KSPGISPYRPEA-LAAAARGTPFIG-GTAL 102 (468)
T ss_pred ECCCCCCCCHHH-HHHHHcCCcEEE-HHHH
Confidence 877765455544 555678999884 4443
No 241
>PRK06953 short chain dehydrogenase; Provisional
Probab=80.27 E-value=7.4 Score=36.95 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|+++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~ 35 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDA 35 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH
Confidence 36889988 68899999999999999999886543
No 242
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.25 E-value=7.6 Score=37.35 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|++++++..+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999 5889999999999999999888544
No 243
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=80.13 E-value=75 Score=36.84 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEE
Q 009323 315 ALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEM 358 (537)
Q Consensus 315 ~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~-~g~~~~lEi 358 (537)
.++++...++.+.+.++-+.+|. +..+||.+++ +|++|++-.
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWai~~~~g~l~ILQa 330 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGR--PMDIEWAKDGDDGKLYIVQA 330 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCcEEEEEe
Confidence 37888999999999999999886 7889999985 688999985
No 244
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=80.06 E-value=14 Score=36.89 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
++++|+|+|-|.+|..+++.+++.|+.+.++..+.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 467999999999999999999999999987755544
No 245
>PRK06138 short chain dehydrogenase; Provisional
Probab=80.05 E-value=6.2 Score=38.05 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=28.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 46899999 57899999999999999999886543
No 246
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.02 E-value=4.3 Score=43.42 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=54.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh--hhc---cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKL---ADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~--~~~---ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 145 (537)
.|+++|+|.|.++..+++.+.+.|++|++++.+....... .++ .-..+. + +.. +. ...++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~------~~~--~~-----~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVL-G------EYP--EE-----FLEGVD 70 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEe-C------Ccc--hh-----HhhcCC
Confidence 5799999999999999999999999999886432111100 111 111221 1 111 11 124589
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 146 ~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
+|+-..|....++ ....+++.|++++
T Consensus 71 ~vv~~~g~~~~~~-~~~~a~~~~i~~~ 96 (450)
T PRK14106 71 LVVVSPGVPLDSP-PVVQAHKKGIEVI 96 (450)
T ss_pred EEEECCCCCCCCH-HHHHHHHCCCcEE
Confidence 8887776543344 4566677899887
No 247
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=79.94 E-value=15 Score=36.90 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=62.4
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEE-EEecC--CCCC---Chhhhc--------cCEEEEcCCCCCCCCCCCHHHH
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCV-AVYST--IDKD---ALHVKL--------ADESVCIGEAPSSQSYLLIPNV 135 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv-~v~~~--~d~~---~~~~~~--------ad~~~~i~~~~~~~~~~~~~~i 135 (537)
..||+|.| .+..+.++++.+.+.|+..+ .|++. .+.. ..+..+ .|-.+..-| -.....+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp------~~~v~~~ 81 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVP------PPFAADA 81 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcC------HHHHHHH
Confidence 36899999 57789999999999999744 45433 1110 001011 343332211 1122334
Q ss_pred HHHHHHcCCCE-EEeCCCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCH
Q 009323 136 LSAAISRGCTM-LHPGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDK 185 (537)
Q Consensus 136 ~~~a~~~~~d~-V~p~~g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK 185 (537)
++.|.+.++.+ |+..-||.-++ ..+.+.+++.|++++||+.--+....++
T Consensus 82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~~ 133 (291)
T PRK05678 82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGEC 133 (291)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccccc
Confidence 44455567765 44445553222 2667778888999999886655554443
No 248
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.94 E-value=8 Score=41.60 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=57.0
Q ss_pred CcEEEEEcCcHHHHH-HHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANRGEIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~-ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.++|+|+|-|.++.. +++.++++|++|++.+..... ....+...-+.+.. .+ +.+.+ .++|.|+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~--~~~~l~~~gi~~~~-----~~-~~~~~------~~~d~vv~ 72 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA--VTQRLLELGAIIFI-----GH-DAENI------KDADVVVY 72 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh--HHHHHHHCCCEEeC-----CC-CHHHC------CCCCEEEE
Confidence 468999999999999 799999999999987533221 11122221111100 01 11211 35899998
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHH
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i 179 (537)
..|....++.+ +.+.+.|+++++ ..+.+
T Consensus 73 spgi~~~~~~~-~~a~~~~i~i~~-~~e~~ 100 (461)
T PRK00421 73 SSAIPDDNPEL-VAARELGIPVVR-RAEML 100 (461)
T ss_pred CCCCCCCCHHH-HHHHHCCCcEEe-HHHHH
Confidence 77765455554 445678999884 44443
No 249
>PLN02686 cinnamoyl-CoA reductase
Probab=79.91 E-value=7.6 Score=40.39 Aligned_cols=36 Identities=6% Similarity=0.078 Sum_probs=30.1
Q ss_pred cCCCCCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEe
Q 009323 66 KVTCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 66 ~~~~~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
....+.|+|||.|+ |-++..+++.+.+.|++|+++.
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~ 84 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAV 84 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEe
Confidence 33445789999995 8899999999999999998764
No 250
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=79.89 E-value=3.8 Score=36.05 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~ 101 (537)
..+++||+|.|..+..++.++.++|.+ ++++.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 368999999999999999999999999 44543
No 251
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=79.85 E-value=5.7 Score=39.33 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=44.0
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 73 kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
||||+|+ |.++..+++.+.+.|++|+++... .. +..+.+.+.++++..++|.|+-.-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~~-------d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------QL-------DLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------cc-------CCCCHHHHHHHHHhCCCCEEEECC
Confidence 5899995 999999999999999999888431 11 245677888888777789888543
No 252
>PRK08643 acetoin reductase; Validated
Probab=79.79 E-value=6.6 Score=38.11 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.4
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~ 36 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 57899999999999999998886443
No 253
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=79.78 E-value=21 Score=35.13 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=49.7
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~~-G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.||.|+|. |.++..+++.+.+. +++++.+. +.+...... . +. .....|.+.+.+++ .+|+|+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~-d~~~~~~~~-~-~~-------~~i~~~~dl~~ll~-----~~DvVid 66 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAV-DRPGSPLVG-Q-GA-------LGVAITDDLEAVLA-----DADVLID 66 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE-ecCCccccc-c-CC-------CCccccCCHHHhcc-----CCCEEEE
Confidence 58999997 99999999999875 68888764 222211111 0 11 11113556555542 5888883
Q ss_pred CCCcccccHHHHHHHHHCCCcee
Q 009323 150 GYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
..- .+-....+..+.+.|++++
T Consensus 67 ~t~-p~~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 67 FTT-PEATLENLEFALEHGKPLV 88 (257)
T ss_pred CCC-HHHHHHHHHHHHHcCCCEE
Confidence 221 0112456677778888753
No 254
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.78 E-value=6.3 Score=40.69 Aligned_cols=98 Identities=16% Similarity=0.081 Sum_probs=56.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++..+++.|+.+|.+ +++++++.+......++ +|+.+.. . .....+.+.+.....++|.|
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~----~--~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNS----S--GTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcC----C--CcCHHHHHHHHhCCCCCCEE
Confidence 467999999999999999999999996 77775443322222222 3443321 1 11223445555444579999
Q ss_pred EeCCCcccccHHHHHHHHHCCCc-eeC
Q 009323 148 HPGYGFLAENAVFVEMCREHGIN-FIG 173 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~-~~G 173 (537)
+-..|...-.....+.+...|.- ++|
T Consensus 250 id~~g~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 250 IDAVGRPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EECCCCHHHHHHHHHHhccCCEEEEEC
Confidence 98776421112233444445533 345
No 255
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=79.77 E-value=6 Score=41.47 Aligned_cols=79 Identities=8% Similarity=-0.046 Sum_probs=49.1
Q ss_pred CcEEEEEcC--cHHHHHHHHHHHHcCCCEEEEec-------C--CC-CCChhhhccCEEEEcCCCC---CCCCCC-CHHH
Q 009323 71 QEKILVANR--GEIAVRVIRTAHEMGIPCVAVYS-------T--ID-KDALHVKLADESVCIGEAP---SSQSYL-LIPN 134 (537)
Q Consensus 71 ~~kvLi~g~--g~~a~~ii~aa~~~G~~vv~v~~-------~--~d-~~~~~~~~ad~~~~i~~~~---~~~~~~-~~~~ 134 (537)
.+|||+.|. ......+++...+.|..+|.-+. . .+ ...+...+|+.+....... ...... -.+.
T Consensus 233 ~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~~ 312 (380)
T TIGR02263 233 NCRVIICGMFCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVALAGDPLQNLALAFLHDSISTAAKYDDDEADKGKY 312 (380)
T ss_pred CCEEEEECcCCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCCCCCHHHHHHHHHhhCCCCCccccCCChhhHHHH
Confidence 479999992 23346788899999998887632 0 01 2234456676664321111 101111 4577
Q ss_pred HHHHHHHcCCCEEEe
Q 009323 135 VLSAAISRGCTMLHP 149 (537)
Q Consensus 135 i~~~a~~~~~d~V~p 149 (537)
|.++++++++|+|+-
T Consensus 313 i~~lvke~~aDGVI~ 327 (380)
T TIGR02263 313 LLDQVRKNAAEGVIF 327 (380)
T ss_pred HHHHHHHhCCCEEEE
Confidence 999999999999993
No 256
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=79.74 E-value=8.4 Score=36.92 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.6
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|.|++||.| .+.++..+++.+.+.|++++++..+.
T Consensus 1 ~~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~ 36 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFSG 36 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCc
Confidence 357899998 68899999999999999999886553
No 257
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.73 E-value=3.4 Score=41.72 Aligned_cols=37 Identities=30% Similarity=0.278 Sum_probs=33.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD 107 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~ 107 (537)
++||+++|-.+.+..+++++-+.|+++++|.+.+|..
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCc
Confidence 3689999999999999999999999999999887743
No 258
>PRK07856 short chain dehydrogenase; Provisional
Probab=79.67 E-value=12 Score=36.12 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=29.3
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 47899999 57799999999999999999886544
No 259
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.61 E-value=11 Score=35.60 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=26.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCC-CEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~-~vv~v~ 101 (537)
.+||||+|.|.++..+++.+.++|+ ++++++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD 52 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVD 52 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEec
Confidence 4689999999999999999999999 455663
No 260
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=79.48 E-value=5.3 Score=41.21 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=27.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCC-CEEEEec
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~-~vv~v~~ 102 (537)
.+||||+|.|.++..++..+.+.|+ ++.+++.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4689999999999999999999999 6667743
No 261
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=79.42 E-value=8 Score=42.22 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCcEEEEEcCcHHHHHHHHHHH-HcCCCEEEEecCCCCCC----hhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDA----LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~-~~G~~vv~v~~~~d~~~----~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~ 144 (537)
..||+.|.+.+.....++..+. ++|.+++++.+...... ....+.+..+.++ +. +.-+..+.+++.++
T Consensus 327 ~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~------D~-~~~e~~~~l~~~~~ 399 (513)
T TIGR01861 327 KGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAID------DP-NELEGLEAMEMLKP 399 (513)
T ss_pred CCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEec------CC-CHHHHHHHHHhcCC
Confidence 4689999999999999999999 69999998865432111 1122334444442 12 22233456688899
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 145 d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
|.++.+. . + ..++.++|+|++
T Consensus 400 Dllig~s-~--~----~~~A~k~gIP~l 420 (513)
T TIGR01861 400 DIILTGK-R--P----GEVSKKMRVPYL 420 (513)
T ss_pred CEEEecC-c--c----chhHhhcCCCEE
Confidence 9999653 1 1 145677899885
No 262
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.35 E-value=6.6 Score=37.99 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=30.0
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
.+++||.| .|.++..+++.+.+.|+++++++.+.+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~ 39 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 36899999 688999999999999999999865543
No 263
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=79.32 E-value=60 Score=35.60 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEE
Q 009323 318 PELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEM 358 (537)
Q Consensus 318 ~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~~g~~~~lEi 358 (537)
+...++|.+.+.++-+.+| -+-.+||-+ ++|++|+|-.
T Consensus 257 p~~~~eL~~~a~~LE~~fg--~pqDIEfai-~~g~L~iLQa 294 (530)
T PRK05878 257 PAVYDELMAAARTLERLGR--DVQDIEFTV-ESGKLWLLQT 294 (530)
T ss_pred HHHHHHHHHHHHHHHHHcC--CceeEEEEE-ECCEEEEEEe
Confidence 4677788888888887776 588899999 5678999876
No 264
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=79.10 E-value=9.6 Score=39.14 Aligned_cols=99 Identities=15% Similarity=0.016 Sum_probs=51.7
Q ss_pred cEEEEEcCcHH-----HHHHHHHHHHcCCCEEEEecCCCCCChhhh-ccCEEEEcCCCCC--CC----------CCCCHH
Q 009323 72 EKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPS--SQ----------SYLLIP 133 (537)
Q Consensus 72 ~kvLi~g~g~~-----a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~-~ad~~~~i~~~~~--~~----------~~~~~~ 133 (537)
+||+|.++|.. +..+++.+++.|++|.+++........... ..-..+.++.... .. ......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVL 81 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHH
Confidence 67888865443 346899999999999998754422111111 1222333421110 00 012233
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 134 ~i~~~a~~~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
.+.++.++.++|.||...... .....-+....+++++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v 118 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLV 118 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEE
Confidence 456667788999999753221 1111222344567664
No 265
>PRK07074 short chain dehydrogenase; Provisional
Probab=79.01 E-value=7.9 Score=37.58 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|.+++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~ 35 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDID 35 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999995 789999999999999999888644
No 266
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=78.98 E-value=7 Score=33.92 Aligned_cols=79 Identities=10% Similarity=0.091 Sum_probs=45.3
Q ss_pred EEEEEcC--cHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 73 KILVANR--GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 73 kvLi~g~--g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~-~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
|||+++. .......++.+++.|++|.+++.+.+........--..+.+.-. ...-.+...-.+.+++++.++|.||.
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~ 80 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHC 80 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEE
Confidence 4555553 33578899999999999999987544322111111122333100 01112223446777788899999996
Q ss_pred CC
Q 009323 150 GY 151 (537)
Q Consensus 150 ~~ 151 (537)
..
T Consensus 81 h~ 82 (139)
T PF13477_consen 81 HT 82 (139)
T ss_pred ec
Confidence 43
No 267
>PRK12743 oxidoreductase; Provisional
Probab=78.96 E-value=9.8 Score=37.01 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=28.4
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
|.|++||.| .+.++..+++.+.+.|++|+++..
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999 577999999999999999988753
No 268
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.96 E-value=6.6 Score=37.78 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.6
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.+.|++||.| .|.++..+++.+.+.|++++++..+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 3457899999 5889999999999999999888543
No 269
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.95 E-value=11 Score=36.32 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|.|++||.| .|.++..+++.+.+.|+++++++..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 457899999 5889999999999999999988643
No 270
>PRK08226 short chain dehydrogenase; Provisional
Probab=78.91 E-value=7.9 Score=37.74 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=29.5
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
...+++||.| .+.++..+++.+.+.|++|++++.+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 3457899999 6779999999999999999888644
No 271
>PRK09135 pteridine reductase; Provisional
Probab=78.89 E-value=9.3 Score=36.64 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.4
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.+++||.| .|.++..+++.+.+.|+++++++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 47899999 588999999999999999999864
No 272
>PRK06179 short chain dehydrogenase; Provisional
Probab=78.88 E-value=12 Score=36.75 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=46.5
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~-----~~~ 144 (537)
.+++||.| .|.++..+++.+.+.|++|+++..+.+...... --+.+.. +..|.+.+.++.+. ..+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~--~~~~~~~-------D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP--GVELLEL-------DVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC--CCeeEEe-------ecCCHHHHHHHHHHHHHhCCCC
Confidence 36799999 578999999999999999998865543221111 1123333 24455555554443 247
Q ss_pred CEEEeCCCc
Q 009323 145 TMLHPGYGF 153 (537)
Q Consensus 145 d~V~p~~g~ 153 (537)
|.++-..|.
T Consensus 75 d~li~~ag~ 83 (270)
T PRK06179 75 DVLVNNAGV 83 (270)
T ss_pred CEEEECCCC
Confidence 888866553
No 273
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=78.84 E-value=8.1 Score=39.62 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=37.6
Q ss_pred EEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHH---HhcCCCcEEEEeccCC
Q 009323 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAA---AAFGNDGVYLEKYVQN 274 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~---~~~~~~~~lvEe~I~g 274 (537)
|+||+..|+-|.||..+++.+|+...=++-+..-. ....-.+++|||=|.-
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T 313 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT 313 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcce
Confidence 79999999999999999999999876655433211 1112358999997665
No 274
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=78.78 E-value=11 Score=41.33 Aligned_cols=70 Identities=20% Similarity=0.122 Sum_probs=46.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHH-HcCCCEEEEecCCCCCChhh-----hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009323 71 QEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHV-----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~-~~G~~vv~v~~~~d~~~~~~-----~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~ 144 (537)
.||+.|.|....+..+.+.+. ++|.+++.+.+......... .+.++.+. ..|..++.+.+++.++
T Consensus 295 Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~i---------~dD~~ei~~~i~~~~p 365 (511)
T TIGR01278 295 GKRAFVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVLI---------TDDFQEVADAIAALEP 365 (511)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeEE---------eCCHHHHHHHHHhcCC
Confidence 589999999999999999997 89999987643221111111 12333332 1245677777777778
Q ss_pred CEEEe
Q 009323 145 TMLHP 149 (537)
Q Consensus 145 d~V~p 149 (537)
|.|+-
T Consensus 366 dliiG 370 (511)
T TIGR01278 366 ELVLG 370 (511)
T ss_pred CEEEE
Confidence 88774
No 275
>PRK00124 hypothetical protein; Validated
Probab=78.57 E-value=50 Score=29.71 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=64.2
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCC-ChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 73 kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~-~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
+|+|=+ +-+.--.+.+.+++.|+++++|.+..... .+..... +.+.++..... . -..|++.++. -|.|+.
T Consensus 2 ~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v-~~v~V~~g~D~---A-D~~Iv~~~~~--gDiVIT- 73 (151)
T PRK00124 2 KIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFI-RTVYVDAGFDA---A-DNEIVQLAEK--GDIVIT- 73 (151)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCce-EEEEeCCCCCh---H-HHHHHHhCCC--CCEEEe-
Confidence 566655 44455667899999999999986322211 1111111 33445422211 1 1356666643 588885
Q ss_pred CCcccccHHHHHHHHHCCCceeCCC-----HHHHHHhcCHHHHHHHHHHCCCCC
Q 009323 151 YGFLAENAVFVEMCREHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~Gp~-----~~~i~~~~dK~~~r~~l~~~Gipv 199 (537)
.+..+|..+-..|...+.|. .+.|.....-..+.+-+++.|..+
T Consensus 74 -----~Di~LAa~~l~Kga~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t 122 (151)
T PRK00124 74 -----QDYGLAALALEKGAIVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIRT 122 (151)
T ss_pred -----CCHHHHHHHHHCCCEEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45567777777777666554 455555444444555566778654
No 276
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.47 E-value=9.4 Score=36.78 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=29.2
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.|+ |.++..+++.+.+.|+++++++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999995 889999999999999999998654
No 277
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=78.40 E-value=8.5 Score=32.53 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHc--CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 73 KILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~--G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
||+|+|.|.++...++.+.+. +.+++.+. +.+... ....+.. +-+ ..|.+.++++ ...++|+|+-.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~-d~~~~~-~~~~~~~-~~~------~~~~~~~~ll---~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVC-DPDPER-AEAFAEK-YGI------PVYTDLEELL---ADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEE-CSSHHH-HHHHHHH-TTS------EEESSHHHHH---HHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEE-eCCHHH-HHHHHHH-hcc------cchhHHHHHH---HhhcCCEEEEe
Confidence 799999999999999999887 55666664 333211 1111100 000 0255555444 44579988865
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009323 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~ 172 (537)
... ......+..+.+.|++++
T Consensus 70 tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 70 TPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp SSG-GGHHHHHHHHHHTTSEEE
T ss_pred cCC-cchHHHHHHHHHcCCEEE
Confidence 422 234566667777787665
No 278
>PRK12827 short chain dehydrogenase; Provisional
Probab=78.40 E-value=17 Score=34.69 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=28.5
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
+.+++||.| .|.++..+++.+.+.|++++++..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 357899999 688999999999999999988753
No 279
>PLN00198 anthocyanidin reductase; Provisional
Probab=78.32 E-value=11 Score=38.48 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
+++|||.| .|-+|..+++.+.+.|++|+++..+.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCC
Confidence 57899999 68899999999999999998775443
No 280
>PLN02775 Probable dihydrodipicolinate reductase
Probab=78.17 E-value=25 Score=35.14 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=44.1
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEe-cCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVY-STIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~-~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
.||+|.| .|..+..++++..+.+++.+... +..+.......+.+.-+.+. ...|.+.++...+...+|.|+
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~------~~~dl~~~l~~~~~~~~~~Vv 84 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLV------GPSEREAVLSSVKAEYPNLIV 84 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeee------cCccHHHHHHHhhccCCCEEE
Confidence 5899999 79999999999988888888643 21211111113333223221 126777888666666789544
No 281
>PRK07024 short chain dehydrogenase; Provisional
Probab=78.10 E-value=7.6 Score=37.82 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=29.7
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|++++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~ 36 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRT 36 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 67899999999999999999886543
No 282
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.03 E-value=8.4 Score=36.93 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~ 41 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE 41 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999 56899999999999999999886543
No 283
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=78.00 E-value=12 Score=40.22 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=44.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHH---cCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~---~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
.++++|+|.|+.+..+++.+++ .|++++.+..+ +............+ +.+ +++.+.++++++|.|
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd-~~~~~~~~i~g~pV----------lg~-~~l~~~i~~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDT-DPAASGRLLTGLPV----------VGA-DDALRLYARTRYAYV 192 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeC-CccccccccCCCcc----------cCh-hHHHHHHHhCCCCEE
Confidence 3689999999999999999874 68888876532 21111111111111 233 678888888999977
Q ss_pred EeCC
Q 009323 148 HPGY 151 (537)
Q Consensus 148 ~p~~ 151 (537)
+-..
T Consensus 193 iIAi 196 (456)
T TIGR03022 193 IVAM 196 (456)
T ss_pred EEec
Confidence 6544
No 284
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.94 E-value=17 Score=39.13 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=54.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh--hhcc--CEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~--~~~a--d~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.+||+|+|-|..+..+++.+++.|++|.+.+......... .++. .-.+..+ ....+.+ .++|.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~~~~------~~~dl 80 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLG-------ENYLDKL------DGFDV 80 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeC-------CCChHHh------ccCCE
Confidence 4689999999999999999999999988875433211111 1122 2222222 1111222 35888
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeC
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~G 173 (537)
|+-..|.-..++. ...+.+.|+++++
T Consensus 81 VV~Spgi~~~~p~-~~~a~~~~i~i~s 106 (458)
T PRK01710 81 IFKTPSMRIDSPE-LVKAKEEGAYITS 106 (458)
T ss_pred EEECCCCCCCchH-HHHHHHcCCcEEe
Confidence 8877765434444 4555678899873
No 285
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=77.85 E-value=9.5 Score=38.06 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=43.7
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 73 kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
||||.| .|..+..+.+.+. -+++++.++... + +..|.+.+.++.++.++|.|+-.-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~-------Ditd~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE---------------L-------DITDPDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------c-------cccChHHHHHHHHhhCCCEEEECc
Confidence 499999 6888999999888 668888874222 2 245788899999999999999763
No 286
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=77.83 E-value=38 Score=33.98 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=80.9
Q ss_pred CcEEEEEcCcH----HHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~----~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.-+|||+|+.. -..-...++.+.|-..+.+.+..+..........+.+... +.+.....+.....++|+
T Consensus 32 ~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~~-------~~~~~~~~~~~~~~~~~a 104 (284)
T COG0063 32 YGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPELMVIE-------VEGKKLLEERELVERADA 104 (284)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcceeEee-------cccchhhHHhhhhccCCE
Confidence 34899988662 2455667888888887776655553333344445555432 444444444444567888
Q ss_pred EEeCCCccccc--HHHHHHHHHCC-CceeCCCHHHHHHhc---------------CHHHHHHHHHHCCCCCCCCcCccCC
Q 009323 147 LHPGYGFLAEN--AVFVEMCREHG-INFIGPNPDSIRIMG---------------DKSTARETMKNAGVPTVPGSDGLLQ 208 (537)
Q Consensus 147 V~p~~g~~se~--~~~a~~~e~~g-i~~~Gp~~~~i~~~~---------------dK~~~r~~l~~~Gipvp~~~~~~~~ 208 (537)
|.-|.|.-.+. ..+.+.+.... .+++ -+.+.+..+. ++-.+++++ |..+++. ..+
T Consensus 105 vviGpGlG~~~~~~~~~~~~l~~~~~p~V-iDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~---g~~~~~~---~~~ 177 (284)
T COG0063 105 VVIGPGLGRDAEGQEALKELLSSDLKPLV-LDADALNLLAELPDLLDERKVVLTPHPGEFARLL---GTEVDEI---EVD 177 (284)
T ss_pred EEECCCCCCCHHHHHHHHHHHhccCCCEE-EeCcHHHHHHhCcccccCCcEEECCCHHHHHHhc---CCccccc---ccc
Confidence 88776543332 23334333333 4544 2666665332 233334333 3233332 234
Q ss_pred CHHHHHHHHHHhCCcEEEE
Q 009323 209 STEEAVKLADELGFPVMIK 227 (537)
Q Consensus 209 s~~~~~~~~~~ig~PvvvK 227 (537)
..+.+++++++++-=+|+|
T Consensus 178 r~~~a~~~a~~~~~vvVLK 196 (284)
T COG0063 178 RLEAARELAAKYGAVVVLK 196 (284)
T ss_pred hHHHHHHHHHHcCCEEEEe
Confidence 5677888999999888999
No 287
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=77.82 E-value=8.4 Score=37.62 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
..|++||.|+ +.++..+++.+.+.|++|++++.+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERS 39 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999994 679999999999999999888644
No 288
>PRK07063 short chain dehydrogenase; Provisional
Probab=77.65 E-value=7.7 Score=37.79 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=29.0
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 57799999999999999999886543
No 289
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=77.64 E-value=13 Score=38.20 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=29.2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
..++|||.|.|.++.-+++.|+.+|.+++++..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 457899999999999999999999998888754
No 290
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=77.55 E-value=8.1 Score=41.84 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=59.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhh---h-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---K-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~---~-~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.....+++.++++|.+++.+.+......... . +.+..+.++ ..+..++.+.+++.++|.
T Consensus 324 Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~-------d~~~~e~~~~i~~~~pDl 396 (475)
T PRK14478 324 GKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMID-------DANPRELYKMLKEAKADI 396 (475)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 57899988888888999999999999988765433221111 1 222333332 345678888888899999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
++.+. .-..+..++|++++
T Consensus 397 iig~s-------~~~~~a~k~giP~~ 415 (475)
T PRK14478 397 MLSGG-------RSQFIALKAGMPWL 415 (475)
T ss_pred EEecC-------chhhhhhhcCCCEE
Confidence 99642 12245667899887
No 291
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=77.53 E-value=11 Score=37.42 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=48.6
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc--CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~--G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
+||.|+|.|.++..+++.+.+. +++++.++ +.+... ...+++.. + ...|.+.++++ .++|.|+-
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~-a~~~a~~~---~----~~~~~~~~ell-----~~~DvVvi 67 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFY-DRNLEK-AENLASKT---G----AKACLSIDELV-----EDVDLVVE 67 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEE-CCCHHH-HHHHHHhc---C----CeeECCHHHHh-----cCCCEEEE
Confidence 4899999999999999998876 46666654 333211 12222211 0 01245556654 35898885
Q ss_pred CCCcccccHHHHHHHHHCCCceeC
Q 009323 150 GYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~G 173 (537)
.... ....+....+.+.|..++-
T Consensus 68 ~a~~-~~~~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 68 CASV-NAVEEVVPKSLENGKDVII 90 (265)
T ss_pred cCCh-HHHHHHHHHHHHcCCCEEE
Confidence 4321 0113344444456766553
No 292
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=77.53 E-value=13 Score=40.61 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=46.6
Q ss_pred CcEEEEEcCcHHHHHHHHHH-HHcCCCEEEEecCCCCCCh-----hhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009323 71 QEKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDAL-----HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa-~~~G~~vv~v~~~~d~~~~-----~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~ 144 (537)
.||+.|.+.+..+..+.+.+ +++|+.++++.+....... ...+.++.... .|..++.+.+++.++
T Consensus 305 Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~~~~~~i~---------~D~~ei~~~I~~~~p 375 (513)
T CHL00076 305 GKKAVVFGDATHAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGFCDEILIT---------DDHTEVGDMIARVEP 375 (513)
T ss_pred CCEEEEEcCchHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHHhccCcEEe---------cCHHHHHHHHHhcCC
Confidence 58999999999999999988 6999999876543322111 11223433321 245677777777788
Q ss_pred CEEEe
Q 009323 145 TMLHP 149 (537)
Q Consensus 145 d~V~p 149 (537)
|.|+-
T Consensus 376 dliiG 380 (513)
T CHL00076 376 SAIFG 380 (513)
T ss_pred CEEEE
Confidence 88874
No 293
>PRK06940 short chain dehydrogenase; Provisional
Probab=77.34 E-value=12 Score=37.04 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|.|.+||.|++.++..+++.+. .|+++++++.+
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYN 33 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCC
Confidence 5578899999999999999996 79999998654
No 294
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=77.23 E-value=10 Score=36.46 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=27.8
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEe
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
|+|++||.| .+.++..+++.+.+.|++++++.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINY 33 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 568999999 56799999999999999988764
No 295
>PLN02778 3,5-epimerase/4-reductase
Probab=77.12 E-value=9.9 Score=38.27 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=25.8
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVA 99 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~ 99 (537)
.|||||.| .|-+|..+++.+.+.|++|++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 46899999 588999999999999998864
No 296
>PRK06482 short chain dehydrogenase; Provisional
Probab=77.00 E-value=9.1 Score=37.68 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=29.2
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|.|++||.| .|.++..+++.+.+.|++++++..+
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357899999 5889999999999999999888644
No 297
>PRK09620 hypothetical protein; Provisional
Probab=76.99 E-value=8.7 Score=37.22 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHcCCCEEEEec
Q 009323 80 GEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 80 g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
|-+|..+++++.+.|++|++++.
T Consensus 29 GfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 29 GTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeC
Confidence 77899999999999999999964
No 298
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=76.93 E-value=10 Score=38.64 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~ 106 (537)
+||+++|....+..+++++.+.|+++++|.+.++.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~ 35 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDK 35 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 38999999999999999999999999988776653
No 299
>PRK06128 oxidoreductase; Provisional
Probab=76.91 E-value=9.7 Score=38.19 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 67 VTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 67 ~~~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+....|++||.| .+.++..+++.+.+.|++|++++.+
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 334458999999 5779999999999999999887643
No 300
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=76.80 E-value=11 Score=36.75 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.1
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
+++|||+| .|.++..+++.+.+.|++|+++..+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 46899999 59999999999999999998875443
No 301
>PRK06198 short chain dehydrogenase; Provisional
Probab=76.80 E-value=9.9 Score=36.92 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCC-EEEEecC
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIP-CVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~-vv~v~~~ 103 (537)
...|++||.| .|.++..+++.+.+.|++ +++++.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 3457899999 477999999999999999 7777543
No 302
>PLN00200 argininosuccinate synthase; Provisional
Probab=76.77 E-value=23 Score=37.43 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCcEEEEEcCcH-HHHHHHHHHHHc-CCCEEEEecC
Q 009323 70 RQEKILVANRGE-IAVRVIRTAHEM-GIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~g~-~a~~ii~aa~~~-G~~vv~v~~~ 103 (537)
|++||+|+=+|. -+.-++..+++. |++|++++-+
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~~G~eViav~id 39 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRENYGCEVVCFTAD 39 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 456777766554 355555666665 9999888644
No 303
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=76.62 E-value=13 Score=38.33 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=28.8
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
+|||||.|+ |-+|..+++.+.+.|++|++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 478999995 99999999999999999998864
No 304
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=76.53 E-value=18 Score=39.73 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=55.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHH-HcCCCEEEEecCCCCCChh-----hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009323 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALH-----VKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~-~~G~~vv~v~~~~d~~~~~-----~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 143 (537)
..||+.|.|....+..+.+.+. ++|.+++.+.+........ ..+.++... -.|..++.+.+++.+
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i---------~~D~~el~~~i~~~~ 362 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALI---------TDDYLEVEDAIAEAA 362 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEE---------ecCHHHHHHHHHhcC
Confidence 3579999999899999999998 7999998775432211111 112233332 125567777778888
Q ss_pred CCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 144 ~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
+|.|+.++ .-...+.++|++++
T Consensus 363 PdliiG~~-------~er~~a~~lgiP~~ 384 (519)
T PRK02910 363 PELVLGTQ-------MERHSAKRLGIPCA 384 (519)
T ss_pred CCEEEEcc-------hHHHHHHHcCCCEE
Confidence 88888432 11234556676654
No 305
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.52 E-value=11 Score=36.67 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=28.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|+.++++..+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999 5779999999999999999988654
No 306
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.38 E-value=7.4 Score=40.29 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=53.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEE-ecCCCCCChhhh-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAV-YSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v-~~~~d~~~~~~~-~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.+|+|+|.|+++.-.+..++.+|...+++ +.++++.....+ .....+.. +. ++ .....+.++....++|.++-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~---~~-~~-~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN---PS-ED-DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec---Cc-cc-cHHHHHHHHhCCCCCCEEEE
Confidence 38999999999999999999999776655 333334444434 33333321 11 11 23334444444457999998
Q ss_pred CCCcccccHHHHHHHHHCC
Q 009323 150 GYGFLAENAVFVEMCREHG 168 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~g 168 (537)
..|..+-.....+++...|
T Consensus 245 ~~G~~~~~~~ai~~~r~gG 263 (350)
T COG1063 245 AVGSPPALDQALEALRPGG 263 (350)
T ss_pred CCCCHHHHHHHHHHhcCCC
Confidence 7773211123344444444
No 307
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=76.30 E-value=3 Score=44.98 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=58.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCC---CC-hhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK---DA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~---~~-~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.-...++..++++|.+++++.+.-.. .. ....+.+..+.++ ..|..++.+++++.++|.
T Consensus 335 GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~el~~~i~~~~pDl 407 (466)
T TIGR01282 335 GKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYD-------DVTHYEFEEFVEKLKPDL 407 (466)
T ss_pred CCEEEEECCCCcHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEee-------CCCHHHHHHHHHHhCCCE
Confidence 588999987777888888999999999977542111 11 1122233444342 356778889999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCce
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINF 171 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~ 171 (537)
++.+.- + ...+.++|+|+
T Consensus 408 ~ig~~~---~----~~~a~k~gIP~ 425 (466)
T TIGR01282 408 VGSGIK---E----KYVFQKMGVPF 425 (466)
T ss_pred EEecCC---c----cceeeecCCCc
Confidence 996531 2 23456778876
No 308
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.19 E-value=11 Score=37.18 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCc---HHHHHHHHHHHHcCCCEEEEecC
Q 009323 68 TCRQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 68 ~~~~~kvLi~g~g---~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
....|++||.|++ .++..+++.+.+.|+.+++++.+
T Consensus 3 ~l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 3 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred ccCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 3345789999975 69999999999999998887543
No 309
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=76.15 E-value=50 Score=35.43 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCChhhhccC-EEEEcC--CCCCC----CCCCCHHHHHHHHHHcCCCEEEeCCCccc
Q 009323 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIG--EAPSS----QSYLLIPNVLSAAISRGCTMLHPGYGFLA 155 (537)
Q Consensus 83 a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad-~~~~i~--~~~~~----~~~~~~~~i~~~a~~~~~d~V~p~~g~~s 155 (537)
...+++.+++.|++|.++.++...... ... ..+.+. +.+.. -.+.....+.+++++.++|.||.......
T Consensus 80 ~~~l~~~L~~~G~eV~vlt~~~~~~~~---~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~ 156 (465)
T PLN02871 80 FQNFIRYLREMGDEVLVVTTDEGVPQE---FHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIM 156 (465)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCcc---ccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchh
Confidence 567889999999999999765432111 110 011000 00000 01222236778888899999996532110
Q ss_pred ccHHHHHHHHHCCCcee
Q 009323 156 ENAVFVEMCREHGINFI 172 (537)
Q Consensus 156 e~~~~a~~~e~~gi~~~ 172 (537)
- .....++...|++++
T Consensus 157 ~-~~~~~~ak~~~ip~V 172 (465)
T PLN02871 157 V-FGALFYAKLLCVPLV 172 (465)
T ss_pred H-HHHHHHHHHhCCCEE
Confidence 0 111223455677765
No 310
>PRK00509 argininosuccinate synthase; Provisional
Probab=76.01 E-value=21 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred CcEEEEEcCcH-HHHHHHHHHHHc-CCCEEEEecC
Q 009323 71 QEKILVANRGE-IAVRVIRTAHEM-GIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~-~a~~ii~aa~~~-G~~vv~v~~~ 103 (537)
++||+|+=+|. -+.-++..+++. |++|++++-+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d 36 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTAD 36 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEe
Confidence 45777666544 345555666664 9999888654
No 311
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=76.00 E-value=15 Score=39.24 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=54.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHH-HcCCCEEEEecCCCCCChhh-----hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009323 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHV-----KLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~-~~G~~vv~v~~~~d~~~~~~-----~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 143 (537)
+.||+.|.+....+..+.+.+. ++|.+++.+.+......... .+.+..+. ..|..++.+.+++.+
T Consensus 300 ~gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~~~~~~~~~~~~~~~~~~~~~~~~i---------~~D~~e~~~~i~~~~ 370 (430)
T cd01981 300 TGKRAFVFGDATHVAAATRILAREMGFRVVGAGTYCKEDAKWFREQATGYCDEALI---------TDDHTEVGDMIARTE 370 (430)
T ss_pred cCCeEEEEcChHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHhcCCceEE---------ecCHHHHHHHHHhhC
Confidence 3578999998888999999886 89999988765433221111 12333332 135567777778888
Q ss_pred CCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 144 ~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
+|.++.+. .....+++.|++++
T Consensus 371 pdliig~~-------~~~~~a~~~gip~~ 392 (430)
T cd01981 371 PELIFGTQ-------MERHIGKRLDIPCA 392 (430)
T ss_pred CCEEEecc-------hhhHHHHHcCCCEE
Confidence 88888432 11223456666653
No 312
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=75.86 E-value=6.9 Score=36.18 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
..++|.|+|-|.++..+++.++.+|.+|+.++...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 36899999999999999999999999999985443
No 313
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=75.75 E-value=10 Score=38.57 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
+||+++|.+..+..+++++.+.|++++.|.+.++
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~ 34 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPD 34 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4899999999999999999999999988876554
No 314
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.71 E-value=8.6 Score=37.62 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=28.9
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+++||.|+ |.++..+++.+.+.|++|++++.+.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999994 6799999999999999999886543
No 315
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=75.62 E-value=11 Score=36.48 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=29.2
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 47899999 58899999999999999999886543
No 316
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=75.58 E-value=29 Score=35.18 Aligned_cols=80 Identities=11% Similarity=-0.054 Sum_probs=43.0
Q ss_pred EEEEEcCcHHH-----HHHHHHHHHcCCCEEEEecCCCCCChh-hhccCEEEEcCCCCCCCC------------CCCHHH
Q 009323 73 KILVANRGEIA-----VRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQS------------YLLIPN 134 (537)
Q Consensus 73 kvLi~g~g~~a-----~~ii~aa~~~G~~vv~v~~~~d~~~~~-~~~ad~~~~i~~~~~~~~------------~~~~~~ 134 (537)
||+|+.+|..+ ..+++.+++.|++|.+++.+....... ...--....+........ ......
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQ 81 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHH
Confidence 67766655542 368999999999999886432211110 111112222221110000 012235
Q ss_pred HHHHHHHcCCCEEEeCCC
Q 009323 135 VLSAAISRGCTMLHPGYG 152 (537)
Q Consensus 135 i~~~a~~~~~d~V~p~~g 152 (537)
+.++.++.++|.|+...+
T Consensus 82 l~~~i~~~~pDvVi~~~~ 99 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGG 99 (348)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 567778889999997543
No 317
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.46 E-value=6.7 Score=38.47 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEc---CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 67 VTCRQEKILVAN---RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 67 ~~~~~~kvLi~g---~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
++...|++||.| ++.++..+++.+.+.|++|++.+.
T Consensus 2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYV 40 (261)
T ss_pred CccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 344467899999 457999999999999999988753
No 318
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.44 E-value=10 Score=38.93 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=54.7
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.+.++|||.|.|.++..+++.|+.+|.. ++++++..+.......+ +|..+.. .+....+.+.++....++|.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~------~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDY------KNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecC------CCCCHHHHHHHHhCCCCCcE
Confidence 3457899999999999999999999996 56654443322222222 2433321 11223445555554467999
Q ss_pred EEeCCCcccccHHHHHHHHHCCC
Q 009323 147 LHPGYGFLAENAVFVEMCREHGI 169 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi 169 (537)
++...|...-.....+.+...|.
T Consensus 239 vld~~g~~~~~~~~~~~l~~~G~ 261 (351)
T cd08285 239 VIIAGGGQDTFEQALKVLKPGGT 261 (351)
T ss_pred EEECCCCHHHHHHHHHHhhcCCE
Confidence 99765531111233445555553
No 319
>PRK07060 short chain dehydrogenase; Provisional
Probab=75.43 E-value=12 Score=35.89 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=46.8
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCCCCCC-hhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHc-CCCEE
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML 147 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~d~~~-~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~-~~d~V 147 (537)
.+++||.|. |.++..+++.+.+.|+++++++.+..... .........+..+ ..+.+.+.++.... ++|.|
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D-------~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLD-------VGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEec-------CCCHHHHHHHHHHhCCCCEE
Confidence 468999995 78999999999999999888864332110 0011122333332 44555565555543 48988
Q ss_pred EeCCC
Q 009323 148 HPGYG 152 (537)
Q Consensus 148 ~p~~g 152 (537)
+-.-|
T Consensus 82 i~~ag 86 (245)
T PRK07060 82 VNCAG 86 (245)
T ss_pred EECCC
Confidence 86544
No 320
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.39 E-value=6.3 Score=38.43 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.7
Q ss_pred CcEEEEEcCc---HHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g---~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.|++ .++..+++.+.+.|++|++++.+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 5789999975 79999999999999999988543
No 321
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.36 E-value=5.6 Score=36.39 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=28.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
..+|+|+|.|..+..+++.|+.+|.+++.++..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 368999999999999999999999999998643
No 322
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=75.28 E-value=10 Score=39.09 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCcEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g~-g~~a~~ii~aa~~~-G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
||+||+|+|. |.++..+++.+.++ +++++++.++..... .+++.+-.+. ......+.+.+.. ...++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~---~l~~~~~~~~-~~~~~~~~~~~~~----~~~~vD~V 72 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK---PLSDVHPHLR-GLVDLVLEPLDPE----ILAGADVV 72 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc---chHHhCcccc-cccCceeecCCHH----HhcCCCEE
Confidence 4579999995 89999999999987 678777765322211 1111100000 0000123222222 12469999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCC
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPN 175 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~ 175 (537)
+...... ....++..+.+.|+.++-.+
T Consensus 73 f~alP~~-~~~~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 73 FLALPHG-VSMDLAPQLLEAGVKVIDLS 99 (343)
T ss_pred EECCCcH-HHHHHHHHHHhCCCEEEECC
Confidence 8654321 23455666667888888433
No 323
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.12 E-value=9.8 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=29.1
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
||+++|.| .|.++..+++.+.+.|++|++++.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 36899999 68899999999999999999986544
No 324
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.10 E-value=11 Score=36.33 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=29.2
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 41 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDA 41 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47899999 57899999999999999999886544
No 325
>PRK07478 short chain dehydrogenase; Provisional
Probab=75.01 E-value=12 Score=36.33 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=29.0
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~ 40 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ 40 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999 57799999999999999999886543
No 326
>PRK10262 thioredoxin reductase; Provisional
Probab=74.94 E-value=8.7 Score=38.99 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 67 ~~~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
++...++|+|+|+|+.+...+..+.+.|++++++.
T Consensus 2 ~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie 36 (321)
T PRK10262 2 GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLIT 36 (321)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE
Confidence 34446789999999999999999999999998885
No 327
>PRK05868 hypothetical protein; Validated
Probab=74.90 E-value=4.9 Score=41.94 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=29.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|++|+|+|+|..+..++..+++.|++|.++...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERH 33 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Confidence 468999999999999999999999999999543
No 328
>PRK07023 short chain dehydrogenase; Provisional
Probab=74.76 E-value=14 Score=35.44 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.1
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 4899999 48899999999999999999886543
No 329
>PRK06841 short chain dehydrogenase; Provisional
Probab=74.67 E-value=12 Score=36.18 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=29.2
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999 58899999999999999998886543
No 330
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=74.58 E-value=12 Score=38.05 Aligned_cols=34 Identities=3% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+.|++||.| .+.++..+++.+.+.|++|+++..+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 467899999 4789999999999999999888643
No 331
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.57 E-value=5.8 Score=38.52 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|++|++++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999 5889999999999999999887544
No 332
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.57 E-value=30 Score=33.05 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.0
Q ss_pred cCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 78 NRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 78 g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
...+.+..+++++.+-|++++=++
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit 45 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVT 45 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE
Confidence 355678999999999999998764
No 333
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.54 E-value=5.9 Score=39.98 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=29.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.+|++|+|.|.++..+++.++++|.++++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 579999999999999999999999988887544
No 334
>TIGR03586 PseI pseudaminic acid synthase.
Probab=74.39 E-value=68 Score=32.86 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc-HH
Q 009323 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-AV 159 (537)
Q Consensus 81 ~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~~se~-~~ 159 (537)
+.+.++|+++++.|.+.+=+.+. .............+...+. .|.. ....+..++.. + .-|+ ..
T Consensus 17 ~~A~~lI~~A~~aGAdavKFQ~~-~~~~l~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~e----l-----~~e~~~~ 81 (327)
T TIGR03586 17 ERALAMIEAAKAAGADAIKLQTY-TPDTITLDSDRPEFIIKGG----LWDG-RTLYDLYQEAH----T-----PWEWHKE 81 (327)
T ss_pred HHHHHHHHHHHHhCCCEEEeeec-cHHHhhccccccccccccC----CcCC-ccHHHHHHHhh----C-----CHHHHHH
Confidence 35899999999999987655431 1111111111111111000 1211 12233333210 1 1132 56
Q ss_pred HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEE
Q 009323 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL 239 (537)
Q Consensus 160 ~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~ 239 (537)
+.+.+++.|+.|+-.. .|.... +++.+.|++.-+--...+++..-+. .+.+.|-|+++| +|+
T Consensus 82 L~~~~~~~Gi~~~stp-------fd~~sv-d~l~~~~v~~~KI~S~~~~n~~LL~-~va~~gkPvils-------tG~-- 143 (327)
T TIGR03586 82 LFERAKELGLTIFSSP-------FDETAV-DFLESLDVPAYKIASFEITDLPLIR-YVAKTGKPIIMS-------TGI-- 143 (327)
T ss_pred HHHHHHHhCCcEEEcc-------CCHHHH-HHHHHcCCCEEEECCccccCHHHHH-HHHhcCCcEEEE-------CCC--
Confidence 7788999999987422 233322 5678888875432113455555444 445679999998 354
Q ss_pred eCCHHHHHHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 009323 240 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274 (537)
Q Consensus 240 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~I~g 274 (537)
.+.+|+..+++.+.+. |+.++.+-..+.+
T Consensus 144 -~t~~Ei~~Av~~i~~~-----g~~~i~LlhC~s~ 172 (327)
T TIGR03586 144 -ATLEEIQEAVEACREA-----GCKDLVLLKCTSS 172 (327)
T ss_pred -CCHHHHHHHHHHHHHC-----CCCcEEEEecCCC
Confidence 3789999999887643 3444555444443
No 335
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.39 E-value=7.6 Score=38.53 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEe
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~ 101 (537)
+.++|||.|.|.++..+++.|+.+|.. +++++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~ 152 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAAD 152 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 457999999999999999999999998 66663
No 336
>PRK08589 short chain dehydrogenase; Validated
Probab=74.29 E-value=9.9 Score=37.48 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=30.0
Q ss_pred CCCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
...|++||.|+ +.++..+++.+.+.|+++++++.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 34678999995 779999999999999999998654
No 337
>PRK05876 short chain dehydrogenase; Provisional
Probab=74.16 E-value=12 Score=37.17 Aligned_cols=35 Identities=9% Similarity=-0.024 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.+.|++||.| .+.++..+++.+.+.|+++++++.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899999 6789999999999999999887543
No 338
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=74.15 E-value=16 Score=37.36 Aligned_cols=73 Identities=14% Similarity=-0.053 Sum_probs=44.5
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCCEEE-EecCCCCCC-hhh-hc---cC-EEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009323 72 EKILVANR-GEIAVRVIRTAHEMGIPCVA-VYSTIDKDA-LHV-KL---AD-ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~~G~~vv~-v~~~~d~~~-~~~-~~---ad-~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 143 (537)
+||||.|+ |-+|..+++.+.+.|+.+++ ++....... ... .+ .+ +.+.. +..|.+.+.++....+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~ 73 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHA-------DICDRAELDRIFAQHQ 73 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEe-------cCCCHHHHHHHHHhcC
Confidence 37999995 88999999999999987544 432111111 000 11 11 12222 3556777877777778
Q ss_pred CCEEEeCC
Q 009323 144 CTMLHPGY 151 (537)
Q Consensus 144 ~d~V~p~~ 151 (537)
+|.|+-.-
T Consensus 74 ~d~vih~A 81 (352)
T PRK10084 74 PDAVMHLA 81 (352)
T ss_pred CCEEEECC
Confidence 99887543
No 339
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=73.95 E-value=9.7 Score=40.71 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=53.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhh---ccC------EEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK---LAD------ESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~---~ad------~~~~i~~~~~~~~~~~~~~i~~~a~~ 141 (537)
.||+.|.+....+..+.+.+.++|.+++.+.+.........+ +.+ ....+ .-.|..++.+.+++
T Consensus 303 gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~-------~~~d~~e~~~~i~~ 375 (435)
T cd01974 303 GKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVY-------PGKDLWHLRSLLFT 375 (435)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEE-------ECCCHHHHHHHHhh
Confidence 589999998889999999999999999776543322111110 011 11111 12466677777777
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 142 ~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
.++|.++-.. .-...++++|++++
T Consensus 376 ~~pDliiG~s-------~~~~~a~~~gip~v 399 (435)
T cd01974 376 EPVDLLIGNT-------YGKYIARDTDIPLV 399 (435)
T ss_pred cCCCEEEECc-------cHHHHHHHhCCCEE
Confidence 7888877432 11245556777664
No 340
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.87 E-value=15 Score=39.95 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=53.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccC--EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad--~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|+|+|-|.++..+++.++..|.++++.+.... .. ..+.+ -.+..+ ....+.+ ..+|.|+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~--~~-~~l~~~g~~~~~~-------~~~~~~l------~~~D~VV 75 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPD--AL-RPHAERGVATVST-------SDAVQQI------ADYALVV 75 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHH--HH-HHHHhCCCEEEcC-------cchHhHh------hcCCEEE
Confidence 47899999999999999999999999888742221 11 11111 111111 0111111 3478898
Q ss_pred eCCCcccccHHHHHHHHHCCCceeC
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~G 173 (537)
-..|....++. .+.+.+.|++++|
T Consensus 76 ~SpGi~~~~p~-~~~a~~~gi~v~~ 99 (488)
T PRK03369 76 TSPGFRPTAPV-LAAAAAAGVPIWG 99 (488)
T ss_pred ECCCCCCCCHH-HHHHHHCCCcEee
Confidence 87776545554 4555678999885
No 341
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=73.73 E-value=10 Score=40.31 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
..++|+|+|.|.++..+++.++.+|.+|++++.++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 36799999999999999999999999988875443
No 342
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=73.69 E-value=6 Score=41.97 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=31.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
|+++|+|+|+|..++.++.++.+.|++|.++...+.
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 467899999999999999999999999999964433
No 343
>PRK05875 short chain dehydrogenase; Provisional
Probab=73.59 E-value=9.8 Score=37.42 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.9
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.|. |.++..+++.+.+.|++|++++.+
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 479999994 889999999999999999988644
No 344
>PRK07890 short chain dehydrogenase; Provisional
Probab=73.58 E-value=9.4 Score=36.98 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=28.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .+.++..+++.+.+.|+.|++++.+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47899999 47899999999999999998886443
No 345
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=73.47 E-value=12 Score=39.53 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=58.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhh----hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~----~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.....+++.++++|.+++.+.+......... ...+..+.+. ..|..++.+.+++.++|.
T Consensus 287 gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~~~~~e~~~~i~~~~pDl 359 (410)
T cd01968 287 GKKAALYTGGVKSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVD-------DANPRELKKLLKEKKADL 359 (410)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 57899988888889999999999999988854322211111 1111222221 356778888888889999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
++.+.. | ...+.++|++++
T Consensus 360 ~ig~s~---~----~~~a~~~gip~~ 378 (410)
T cd01968 360 LVAGGK---E----RYLALKLGIPFC 378 (410)
T ss_pred EEECCc---c----hhhHHhcCCCEE
Confidence 985421 1 245667888876
No 346
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.37 E-value=69 Score=28.70 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=68.3
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 73 kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
+|.|=. +-++-..+.+.+.++|++|++|.+..-... ........+ +++... . --..|++.++ .-|.|+.
T Consensus 3 ~I~VDADACPVk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~-V~~g~D--a--aD~~Iv~~a~--~gDlVVT-- 72 (150)
T COG1671 3 TIWVDADACPVKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVV-VDAGFD--A--ADDWIVNLAE--KGDLVVT-- 72 (150)
T ss_pred eEEEeCCCCchHHHHHHHHHHhCCeEEEEeCCCccCC-CCCceeEEE-ecCCcc--h--HHHHHHHhCC--CCCEEEE--
Confidence 344432 444556788999999999999975443322 233333333 332111 1 1235777774 4788884
Q ss_pred CcccccHHHHHHHHHCCCceeCCC-----HHHHHHhcCHHHHHHHHHHCCCCC
Q 009323 152 GFLAENAVFVEMCREHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 152 g~~se~~~~a~~~e~~gi~~~Gp~-----~~~i~~~~dK~~~r~~l~~~Gipv 199 (537)
.+..+|..+...|...++|. .+.|....+...+...+++.|...
T Consensus 73 ----~Di~LA~~ll~kg~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~ 121 (150)
T COG1671 73 ----ADIPLASLLLDKGAAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKT 121 (150)
T ss_pred ----CchHHHHHHHhcCCEEECCCCcccCHhHHHHHHHHHHHHHHHHHhcccc
Confidence 45567888888888888775 455555555555555666777663
No 347
>PRK05717 oxidoreductase; Validated
Probab=73.36 E-value=18 Score=34.98 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=28.8
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence 57899999 5789999999999999999988543
No 348
>PRK06753 hypothetical protein; Provisional
Probab=73.28 E-value=5.5 Score=41.28 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=29.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
++|+|+|+|..+..++..+++.|++++++...+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 389999999999999999999999999985444
No 349
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.24 E-value=14 Score=37.36 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=83.4
Q ss_pred CCCCCcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH----
Q 009323 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS---- 141 (537)
Q Consensus 67 ~~~~~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~---- 141 (537)
+=++..|+||+|.|++++-.+..|+.+|.. +++++-.+.+.....++--..+.- ..... ..+.+.+..++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~--~~~~~---~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDP--SSHKS---SPQELAELVEKALGK 240 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEee--ccccc---cHHHHHHHHHhhccc
Confidence 334567899999999999999999999975 455533333444444443333321 11111 34444444432
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHCCC-ceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCC-CHHHHHHHHHH
Q 009323 142 RGCTMLHPGYGFLAENAVFVEMCREHGI-NFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ-STEEAVKLADE 219 (537)
Q Consensus 142 ~~~d~V~p~~g~~se~~~~a~~~e~~gi-~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~-s~~~~~~~~~~ 219 (537)
..+|..+-..|...-.-....++..-|. .+.|...+.+..-- +.-.+++..+ -..+ +.++ ++.++.++.+.
T Consensus 241 ~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi----~~v~~kE~~~--~g~f-ry~~~~y~~ai~li~s 313 (354)
T KOG0024|consen 241 KQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPI----IDVALKEVDL--RGSF-RYCNGDYPTAIELVSS 313 (354)
T ss_pred cCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccCh----hhhhhheeee--eeee-eeccccHHHHHHHHHc
Confidence 3488888777652211122234444443 12232222221111 1112222221 1122 3344 67777666542
Q ss_pred hCCcEEEEecCCCCCccEEEeCCHHHHHHHHHHHHHH
Q 009323 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 256 (537)
Q Consensus 220 ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~ 256 (537)
| -+=+||. +.--...+++.++|++....
T Consensus 314 -G-ki~~k~l-------IT~r~~~~~~~eAf~~~~~~ 341 (354)
T KOG0024|consen 314 -G-KIDVKPL-------ITHRYKFDDADEAFETLQHG 341 (354)
T ss_pred -C-CcCchhh-------eecccccchHHHHHHHHHhC
Confidence 1 1223321 22223478888888887654
No 350
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.20 E-value=15 Score=40.67 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
..++|+|+|.|..+...+..++++|++|++++..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4689999999999999999999999998888543
No 351
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=73.17 E-value=9.8 Score=39.47 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-CEEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~-~vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++..+++.|+.+|. .+++++.+++......++ +|..+.. .+....+.+.++... ++|.|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~------~~~~~~~~i~~~~~~-g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNA------GDPNAVEQVRELTGG-GVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCC------CchhHHHHHHHHhCC-CCCEE
Confidence 35789999999999999999999999 477775443322222222 3433321 111123344444333 79999
Q ss_pred EeCCCcccccHHHHHHHHHCCC
Q 009323 148 HPGYGFLAENAVFVEMCREHGI 169 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi 169 (537)
+-..|...-.....+.+...|.
T Consensus 264 id~~G~~~~~~~~~~~l~~~G~ 285 (371)
T cd08281 264 FEMAGSVPALETAYEITRRGGT 285 (371)
T ss_pred EECCCChHHHHHHHHHHhcCCE
Confidence 9766532111223344555553
No 352
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.05 E-value=24 Score=37.80 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=54.3
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh--hhccC--EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~--~~~ad--~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
||+|+|.|..+..+++.|.+.|++|.+.+......... ..+.+ -.+..+. ..+.+.+.... .++|.|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~------~~~~~~~~~~~--~~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGK------PLELESFQPWL--DQPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECC------ccchhhhhHHh--hcCCEEE
Confidence 69999999999999999999999998885433222111 11222 1222221 11222222222 3578888
Q ss_pred eCCCcccccHHHHHHHHHCCCceeC
Q 009323 149 PGYGFLAENAVFVEMCREHGINFIG 173 (537)
Q Consensus 149 p~~g~~se~~~~a~~~e~~gi~~~G 173 (537)
-..|....++.+ ..+.+.|+++++
T Consensus 74 ~s~gi~~~~~~~-~~a~~~~i~v~~ 97 (459)
T PRK02705 74 VSPGIPWDHPTL-VELRERGIEVIG 97 (459)
T ss_pred ECCCCCCCCHHH-HHHHHcCCcEEE
Confidence 776654344544 444678999874
No 353
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=72.97 E-value=12 Score=38.20 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=55.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCE-EEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC-E
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPC-VAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCT-M 146 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~v-v~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d-~ 146 (537)
..++|||.|.|.++..+++.|+.+|.++ +++++..+.......+ ++..+.. . . .+.+.+.++....++| .
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~----~--~-~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNS----R--E-MSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecC----c--c-cCHHHHHHHhcCCCCCeE
Confidence 3579999999999999999999999984 5554333222211111 2333321 1 1 1245566665556788 7
Q ss_pred EEeCCCcccccHHHHHHHHHCCCc-eeC
Q 009323 147 LHPGYGFLAENAVFVEMCREHGIN-FIG 173 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~-~~G 173 (537)
|+-..|...-.....+++...|.. ++|
T Consensus 233 v~d~~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 233 ILETAGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 776555321113344555555543 344
No 354
>PRK08703 short chain dehydrogenase; Provisional
Probab=72.86 E-value=7.8 Score=37.19 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
..+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 347899999 57799999999999999998886544
No 355
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=72.84 E-value=26 Score=33.62 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=29.0
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 47899999 47799999999999999999986543
No 356
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=72.76 E-value=16 Score=35.41 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=29.0
Q ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|.|++||.|+ +.++..+++.+.+.|+++++++.+
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4578999995 678999999999999999988644
No 357
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=72.76 E-value=28 Score=33.91 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=29.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+.+
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47899999 578999999999999999999865443
No 358
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.75 E-value=5.5 Score=42.62 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=34.3
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA 108 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~ 108 (537)
+|.++|.|+|+|..|+..++.|++.|++++++....+...
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG 43 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence 4578999999999999999999999999999965555443
No 359
>PRK08263 short chain dehydrogenase; Provisional
Probab=72.71 E-value=9.4 Score=37.63 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=29.0
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|.|+|||.| .|.++..+++.+.+.|++|+++..+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 457899999 5889999999999999999888644
No 360
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=72.49 E-value=25 Score=37.63 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=44.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHH---cCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~---~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
.+++||+|.|+.+..+.+..++ .|++++.+..+.+... .... ..-+.+.+++.++++++++|.|
T Consensus 124 ~rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~---~i~g----------vpVlG~~~dl~~~v~~~~Id~V 190 (442)
T TIGR03013 124 KRRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA---YVPS----------EHVIENGDGLVEYVLRHRIDEI 190 (442)
T ss_pred CCcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc---ccCC----------CcccCCHHHHHHHHHhCCCCEE
Confidence 3689999999999988433332 5888887653322111 1111 1124567889999999999988
Q ss_pred EeCC
Q 009323 148 HPGY 151 (537)
Q Consensus 148 ~p~~ 151 (537)
+-..
T Consensus 191 iIAl 194 (442)
T TIGR03013 191 VIAL 194 (442)
T ss_pred EEEC
Confidence 8543
No 361
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=72.37 E-value=9.9 Score=38.70 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=47.5
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCCh--hh---hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HV---KLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~--~~---~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 143 (537)
+.++|+|.| .|-+|..|++.+-+.||+|...-.++....- +. .-+.+...+ ...+-.+.+.+.+.+ .+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l----~~aDL~d~~sf~~ai--~g 78 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKL----FKADLLDEGSFDKAI--DG 78 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceE----EeccccccchHHHHH--hC
Confidence 467999999 5889999999999999999987554443111 11 112221111 112345566666666 45
Q ss_pred CCEEEeC
Q 009323 144 CTMLHPG 150 (537)
Q Consensus 144 ~d~V~p~ 150 (537)
+|+|+-.
T Consensus 79 cdgVfH~ 85 (327)
T KOG1502|consen 79 CDGVFHT 85 (327)
T ss_pred CCEEEEe
Confidence 9988743
No 362
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.35 E-value=10 Score=36.89 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=28.5
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|++|++++.+
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 57899999 4779999999999999999888543
No 363
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=72.14 E-value=37 Score=33.66 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=64.8
Q ss_pred cEEEEEc-CcHHHHHHHHHHHH-cCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVAN-RGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~-~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.||.|+| .|.++..+++.+.+ -+++++.+....+.......... ..-..+ .....|.+.+.+ ...+|+|+-
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~-~~~~~~-~gv~~~~d~~~l-----~~~~DvVId 74 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGE-LAGIGK-VGVPVTDDLEAV-----ETDPDVLID 74 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHH-hcCcCc-CCceeeCCHHHh-----cCCCCEEEE
Confidence 4899999 69999999999986 58888887532322111101100 000000 001124555555 145898874
Q ss_pred CCCcccccHHHHHHHHHCCCcee-CCCHHHHHHhcCHHHHHHHHHHCCCCCC
Q 009323 150 GYGFLAENAVFVEMCREHGINFI-GPNPDSIRIMGDKSTARETMKNAGVPTV 200 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~-Gp~~~~i~~~~dK~~~r~~l~~~Gipvp 200 (537)
... ..-....+..+.+.|++++ |.+ . . ...+...+.+.+++.|+++.
T Consensus 75 fT~-p~~~~~~~~~al~~g~~vVigtt-g-~-~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 75 FTT-PEGVLNHLKFALEHGVRLVVGTT-G-F-SEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred CCC-hHHHHHHHHHHHHCCCCEEEECC-C-C-CHHHHHHHHHHHhcCCccEE
Confidence 321 1111356677778888876 332 1 1 22245566677788787764
No 364
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=72.14 E-value=17 Score=34.32 Aligned_cols=120 Identities=9% Similarity=0.009 Sum_probs=64.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.+||||+|.|.++..+++.+-..|+..+.+. |.|.... ..+...++. .. ... .-.-.+.+.+.+++.+++.-+-.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lv-D~d~ve~-snL~rqfl~-~~-~di-G~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTIL-DDRTVTE-EDLGAQFLI-PA-EDL-GQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEE-ECCcccH-hhCCCCccc-cH-HHc-CchHHHHHHHHHHHHCCCCEEEE
Confidence 4689999999999999999999999866543 3332221 122222221 10 000 01224556666777777754422
Q ss_pred -CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q 009323 151 -YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (537)
Q Consensus 151 -~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~ 202 (537)
....+++ ..+.+....+.+...... .-+....+.++++|+|..-.
T Consensus 96 ~~~~~~~~--~~~~~~~~dvVi~~~~~~-----~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 96 DTDDISEK--PEEFFSQFDVVVATELSR-----AELVKINELCRKLGVKFYAT 141 (197)
T ss_pred EecCcccc--HHHHHhCCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEEE
Confidence 1222222 123344445544322211 12334556788899987543
No 365
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=72.11 E-value=6.3 Score=39.60 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=29.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++++|+|.|.++..+++.++.+|.++++++.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 579999999999999999999999988877543
No 366
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=72.09 E-value=33 Score=33.58 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=26.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v 100 (537)
.+||+|+|.|.++..+++.+.+.|+.-+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~l 61 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTL 61 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 468999999999999999999999965544
No 367
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=71.95 E-value=65 Score=34.45 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=73.9
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHc--CCCEEEEecCCCCCChhh---hccCEEEEcCCCC--------------CCCCCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHV---KLADESVCIGEAP--------------SSQSYL 130 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~--G~~vv~v~~~~d~~~~~~---~~ad~~~~i~~~~--------------~~~~~~ 130 (537)
.|||.|+|+ |.+|...++-+++. .++++++....+...... .+.-+++++.... ..+-+.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 479999997 88877766665553 577888754443221111 1222333332110 001122
Q ss_pred CHHHHHHHHHHcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCC
Q 009323 131 LIPNVLSAAISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (537)
Q Consensus 131 ~~~~i~~~a~~~~~d~V~p~~-g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~ 201 (537)
..+.+.+++....+|.|+... |+. ..... -.+.+.|..+.-.+.|++-..++= ..++++++|....|
T Consensus 137 G~egl~~la~~~evDiVV~AIvG~a-GL~pT-l~AIkaGK~VALANKESLV~aG~l--I~~~ak~~~~~IlP 204 (454)
T PLN02696 137 GEEGIVEVARHPEAVTVVTGIVGCA-GLKPT-VAAIEAGKDIALANKETLIAGGPF--VLPLAKKHGVKILP 204 (454)
T ss_pred CHHHHHHHHcCCCCCEEEEeCcccc-chHHH-HHHHHCCCcEEEecHHHHHhhHHH--HHHHHHHcCCeEee
Confidence 457888888888899988763 432 22222 233467777766788888776653 34567778877644
No 368
>PRK09134 short chain dehydrogenase; Provisional
Probab=71.94 E-value=23 Score=34.37 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.+.|++||.| .|.++..+++.+.+.|+.++++..
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3467899999 577999999999999999987653
No 369
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=71.85 E-value=16 Score=36.86 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=61.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHc-CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~-G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
..||.|+|.|.++...+..+.+. +++++++. +.|..+.....+.++- +. ..|.+.+.+++...-.++|.|+-
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVv-did~es~gla~A~~~G-i~-----~~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMV-GIDPESDGLARARRLG-VA-----TSAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEE-eCChhhHHHHHHHHcC-CC-----cccCCHHHHHhCcCCCCCCEEEE
Confidence 35899999999999877777765 66777664 4444433334444321 10 12456777775211146999986
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~ 178 (537)
..+.. ....++..+.+.|..++-.++..
T Consensus 77 AT~a~-~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 77 ATSAG-AHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCHH-HHHHHHHHHHHcCCeEEECCccc
Confidence 54321 23566777778888887655544
No 370
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=71.83 E-value=19 Score=33.36 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=26.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
+++|+|.|..+..+++.+++.|++++.+-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfi 29 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFL 29 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEE
Confidence 48999999999999999999999999664
No 371
>PRK06382 threonine dehydratase; Provisional
Probab=71.76 E-value=36 Score=36.04 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=61.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
+.|+...+|..+..++.+|+.+|++++++.+... ...-++..+.++++.++.+.
T Consensus 74 ~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~--------------------------~~~k~~~~~~~GA~Vv~~~~ 127 (406)
T PRK06382 74 NGVITASAGNHAQGVAYAASINGIDAKIVMPEYT--------------------------IPQKVNAVEAYGAHVILTGR 127 (406)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC--------------------------HHHHHHHHHHcCCEEEEECC
Confidence 3588888999999999999999999998843221 11224456778888887654
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCC
Q 009323 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+. +. ....++.++.|..++-|-.+.....+.+....+++++.+
T Consensus 128 ~~~-~a~~~a~~la~~~~~~~v~~~~~~~~i~g~~t~~~Ei~eq~~ 172 (406)
T PRK06382 128 DYD-EAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLEIMEDLP 172 (406)
T ss_pred CHH-HHHHHHHHHHHhcCCEecCccCChHHHHHHHHHHHHHHHhcC
Confidence 321 22 222334445566665333233444556777888887764
No 372
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=71.69 E-value=20 Score=35.88 Aligned_cols=73 Identities=18% Similarity=0.008 Sum_probs=46.2
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhh-cc---C-EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LA---D-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 73 kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~-~a---d-~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
||||.| .|.++..+++.+.+.|++|++++........... .. . +.+.. +..+.+.+.++.+..++|.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEG-------DLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEEC-------CCCCHHHHHHHHHhCCCcE
Confidence 588898 6889999999999999999887422111110001 10 0 12222 3556677777777667998
Q ss_pred EEeCCC
Q 009323 147 LHPGYG 152 (537)
Q Consensus 147 V~p~~g 152 (537)
|+-.-|
T Consensus 74 vv~~ag 79 (328)
T TIGR01179 74 VIHFAG 79 (328)
T ss_pred EEECcc
Confidence 886544
No 373
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=71.63 E-value=28 Score=36.40 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=57.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh------hhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH------VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~------~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~ 144 (537)
.+++.|.+.+..+..+++.++++|.+++.+.+........ .....+.+. ..|.+.+.+.+++.++
T Consensus 279 g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~d~~~~~~~~~~~~p 349 (399)
T cd00316 279 GKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYERREELLGEGTEVVD---------DGDLEELEELIRELKP 349 (399)
T ss_pred CCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHhcCCCCEEEe---------CCCHHHHHHHHhhcCC
Confidence 5789999888888888999999999988776543332211 111222221 3477888889999999
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 145 d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
|.++... .....+++.|++++
T Consensus 350 dl~ig~~-------~~~~~~~~~~ip~~ 370 (399)
T cd00316 350 DLIIGGS-------KGRYIAKKLGIPLV 370 (399)
T ss_pred CEEEECC-------cHHHHHHHhCCCEE
Confidence 9998542 12344556677765
No 374
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=71.61 E-value=90 Score=29.30 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=74.6
Q ss_pred cCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc
Q 009323 78 NRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN 157 (537)
Q Consensus 78 g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~g~~se~ 157 (537)
.+|-=+.-.+..+++.|++++++........ +.... ...+.+.+...|+..++..+.-......|+
T Consensus 7 SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~------~~~~~--------h~~~~e~~~~~A~~lgipl~~i~~~~~~e~ 72 (194)
T cd01994 7 SGGKDSCYALYRALEEGHEVVALLNLTPEEG------SSMMY--------HTVNHELLELQAEAMGIPLIRIEISGEEED 72 (194)
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEEEEecCCC------Ccccc--------cccCHHHHHHHHHHcCCcEEEEeCCCCchH
Confidence 3444455566677779999988764432211 00000 123567788888888887654322111111
Q ss_pred --HHHHHHHH---HCCCc--eeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecC
Q 009323 158 --AVFVEMCR---EHGIN--FIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (537)
Q Consensus 158 --~~~a~~~e---~~gi~--~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~ 230 (537)
..+.+.+. +.|+. +.|.. ..-..|.+..+.+.++|+...-. ..-.+.+++.+-.-..||-++|..+.
T Consensus 73 ~~~~l~~~l~~~~~~g~~~vv~G~i----~sd~~~~~~e~~~~~~gl~~~~P--LW~~~~~~ll~e~~~~g~~~~iv~v~ 146 (194)
T cd01994 73 EVEDLKELLRKLKEEGVDAVVFGAI----LSEYQRTRVERVCERLGLEPLAP--LWGRDQEELLREMIEAGFKAIIIKVA 146 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECcc----ccHHHHHHHHHHHHHcCCEEEec--ccCCCHHHHHHHHHHcCCeEEEEEec
Confidence 22322222 22554 34432 23346888888999999876443 22356666655555789987766555
Q ss_pred C
Q 009323 231 G 231 (537)
Q Consensus 231 g 231 (537)
.
T Consensus 147 ~ 147 (194)
T cd01994 147 A 147 (194)
T ss_pred c
Confidence 3
No 375
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=71.58 E-value=6.7 Score=41.33 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=48.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.+++||+|.|+++.-+++.+.+.|+.-+.+.+.. ......+|++.- -.+...+++.....+ +|.|+.+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~--------~~~~~l~el~~~l~~--~DvViss 245 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLG--------AEAVALEELLEALAE--ADVVISS 245 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhC--------CeeecHHHHHHhhhh--CCEEEEe
Confidence 5789999999999999999999998877774322 223344444322 124456666666644 8888876
Q ss_pred CCc
Q 009323 151 YGF 153 (537)
Q Consensus 151 ~g~ 153 (537)
.+.
T Consensus 246 Tsa 248 (414)
T COG0373 246 TSA 248 (414)
T ss_pred cCC
Confidence 653
No 376
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=71.51 E-value=32 Score=36.68 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=53.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHH-HcCCCEEEEecCCCCCChhhh----------ccCEEEEcCCCCCCCCCCCHHHHHHHH
Q 009323 71 QEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHVK----------LADESVCIGEAPSSQSYLLIPNVLSAA 139 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~-~~G~~vv~v~~~~d~~~~~~~----------~ad~~~~i~~~~~~~~~~~~~~i~~~a 139 (537)
.+|+.|.+....+..+.+.+. ++|..++++............ +.++.+. ..|..++.+.+
T Consensus 293 ~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~D~~~~~~~i 363 (427)
T cd01971 293 PRRFAVIADSTYALGLARFLVNELGWVPAKQVITDNPPEKYRSAIENEFEAEGVSAEVVF---------SEDGYAIGQSL 363 (427)
T ss_pred CceEEEECChHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHhcCCCCcEEE---------ecCHHHHHHHH
Confidence 478999998899999999995 899998776433322211111 2233332 23566777777
Q ss_pred HHcC----CCEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 140 ISRG----CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 140 ~~~~----~d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
++.+ +|.|+.+. .-..+++++|++++
T Consensus 364 ~~~~~~~~~dliig~s-------~~~~~a~~~~ip~i 393 (427)
T cd01971 364 RQSDFKYKPPIIFGSS-------WERDLAKELGGKIL 393 (427)
T ss_pred HhCCCCCCCCEEEech-------HHHHHHHHcCCCeE
Confidence 6664 88887421 12234556677664
No 377
>PRK06847 hypothetical protein; Provisional
Probab=71.43 E-value=7.3 Score=40.35 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=29.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+++|+|+|+|..+..++..|++.|++|+++...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 468999999999999999999999999998543
No 378
>PRK09126 hypothetical protein; Provisional
Probab=71.36 E-value=6.1 Score=41.21 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|...|+|+|+|..+..++.++.+.|++|+++....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 44579999999999999999999999999995433
No 379
>PRK07576 short chain dehydrogenase; Provisional
Probab=71.30 E-value=12 Score=36.73 Aligned_cols=34 Identities=9% Similarity=0.165 Sum_probs=29.1
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.|. |.++..+++.+.+.|+.|++++.+.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999994 7899999999999999999986443
No 380
>PRK09224 threonine dehydratase; Reviewed
Probab=71.29 E-value=33 Score=37.43 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=27.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
+.|+.++.|..+..++.+|+++|++++++.+
T Consensus 69 ~gvV~aSaGNha~avA~aa~~lGi~~~IvmP 99 (504)
T PRK09224 69 RGVITASAGNHAQGVALSAARLGIKAVIVMP 99 (504)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEC
Confidence 4588888999999999999999999998853
No 381
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=71.28 E-value=21 Score=36.30 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCcEEEEEcCcHHH-HHHHHHHHHcC--CCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 70 RQEKILVANRGEIA-VRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 70 ~~~kvLi~g~g~~a-~~ii~aa~~~G--~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
++.||.|+|.|.++ ...+.++++.+ +.++.+. +.++. ....++.++- + + ..|.+.+++++ ...+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~-d~~~~-~a~~~a~~~~-~---~--~~~~~~~~ll~---~~~iD~ 70 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVV-DRDPE-RAEAFAEEFG-I---A--KAYTDLEELLA---DPDIDA 70 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEe-cCCHH-HHHHHHHHcC-C---C--cccCCHHHHhc---CCCCCE
Confidence 45799999988665 55888888887 3666664 22211 1122232211 1 0 24667666653 345898
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCc-cCCCHHHHHHHHH--HhCCc
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG-LLQSTEEAVKLAD--ELGFP 223 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~-~~~s~~~~~~~~~--~ig~P 223 (537)
|+-..- ..-..+.+..+.+.|..++.=.|-+... .+=..+.+++++.|+..--++.. .......+++..+ .+|.+
T Consensus 71 V~Iatp-~~~H~e~~~~AL~aGkhVl~EKPla~t~-~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~v 148 (342)
T COG0673 71 VYIATP-NALHAELALAALEAGKHVLCEKPLALTL-EEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGEV 148 (342)
T ss_pred EEEcCC-ChhhHHHHHHHHhcCCEEEEcCCCCCCH-HHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcCCcCce
Confidence 885431 1123566677778888776533333322 22236677888888876554322 2234556666665 57878
Q ss_pred EEEEec
Q 009323 224 VMIKAT 229 (537)
Q Consensus 224 vvvKp~ 229 (537)
..++-.
T Consensus 149 ~~~~~~ 154 (342)
T COG0673 149 VSVQAS 154 (342)
T ss_pred EEEEEE
Confidence 777743
No 382
>PRK06523 short chain dehydrogenase; Provisional
Probab=71.27 E-value=26 Score=34.00 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=29.3
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 47899999 57899999999999999999986543
No 383
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.26 E-value=31 Score=36.74 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=56.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChh-hhccC--EEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~-~~~ad--~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
.|+++|+|.|.++..+++.+.+.|++|++.+.+....... ..+.+ -.+..+ . +...+. ..++|.|
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~-------~-~~~~~~----~~~~d~v 72 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICG-------S-HPLELL----DEDFDLM 72 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeC-------C-CCHHHh----cCcCCEE
Confidence 4789999999999999999999999999885433222111 11211 112111 1 111121 1248888
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009323 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~ 178 (537)
+-..|....++ ..+.+.+.|+++++ ..+.
T Consensus 73 V~s~gi~~~~~-~~~~a~~~~i~v~~-~~el 101 (447)
T PRK02472 73 VKNPGIPYTNP-MVEKALEKGIPIIT-EVEL 101 (447)
T ss_pred EECCCCCCCCH-HHHHHHHCCCcEEe-HHHH
Confidence 87776544444 44555678999884 4443
No 384
>PRK08163 salicylate hydroxylase; Provisional
Probab=71.25 E-value=7.6 Score=40.59 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=29.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++|+|+|+|..+..++.++++.|++|.++...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQA 36 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeC
Confidence 468999999999999999999999999999543
No 385
>PRK06914 short chain dehydrogenase; Provisional
Probab=71.22 E-value=15 Score=36.11 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=29.5
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
+.+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~ 37 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP 37 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH
Confidence 346799999 57899999999999999999886544
No 386
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=71.20 E-value=52 Score=32.43 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCEEEEecCC-----------------CCCChhhhccCE--------EEEcCCCCCCCCCCCHHHHHHHHH
Q 009323 86 VIRTAHEMGIPCVAVYSTI-----------------DKDALHVKLADE--------SVCIGEAPSSQSYLLIPNVLSAAI 140 (537)
Q Consensus 86 ii~aa~~~G~~vv~v~~~~-----------------d~~~~~~~~ad~--------~~~i~~~~~~~~~~~~~~i~~~a~ 140 (537)
.++.+.+-|.+.+++++.. |.+.....++++ .+.. .-...|.|.+.+.+++-++
T Consensus 27 sAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVia-Gv~atDP~~~~~~fl~~lk 105 (268)
T PF09370_consen 27 SAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIA-GVCATDPFRDMDRFLDELK 105 (268)
T ss_dssp HHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEE-EE-TT-TT--HHHHHHHHH
T ss_pred hhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEE-EecCcCCCCcHHHHHHHHH
Confidence 3678888999999988521 111111122222 2211 1234467899999999999
Q ss_pred HcCCCEEE--eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHH
Q 009323 141 SRGCTMLH--PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (537)
Q Consensus 141 ~~~~d~V~--p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~ 218 (537)
+.++-+|. |+.|. -+..|.+.+|+.|+.|- . -..+-+.+++.|+-+.+| +-|.+++.+.+
T Consensus 106 ~~Gf~GV~NfPTvgl--iDG~fR~~LEe~Gmgy~---~--------EVemi~~A~~~gl~T~~y----vf~~e~A~~M~- 167 (268)
T PF09370_consen 106 ELGFSGVQNFPTVGL--IDGQFRQNLEETGMGYD---R--------EVEMIRKAHEKGLFTTAY----VFNEEQARAMA- 167 (268)
T ss_dssp HHT-SEEEE-S-GGG----HHHHHHHHHTT--HH---H--------HHHHHHHHHHTT-EE--E----E-SHHHHHHHH-
T ss_pred HhCCceEEECCccee--eccHHHHHHHhcCCCHH---H--------HHHHHHHHHHCCCeeeee----ecCHHHHHHHH-
Confidence 99999886 44443 34789999999998542 1 224455788999999987 55899988877
Q ss_pred HhCCcEEEEec--CCCCCccEEEeCCHHHHHHHHHHHHHHH
Q 009323 219 ELGFPVMIKAT--AGGGGRGMRLAKEPDEFVKLLQQAKSEA 257 (537)
Q Consensus 219 ~ig~PvvvKp~--~g~gg~Gv~~v~~~~el~~~~~~~~~~~ 257 (537)
+.|--+++=-. .-+|..|.....+.++..+.++++.+..
T Consensus 168 ~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa 208 (268)
T PF09370_consen 168 EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA 208 (268)
T ss_dssp HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH
T ss_pred HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH
Confidence 56665555443 2336688888888888888888777655
No 387
>PRK07035 short chain dehydrogenase; Provisional
Probab=71.16 E-value=14 Score=35.58 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=28.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|++|++++.+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999 6779999999999999999998654
No 388
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.13 E-value=14 Score=35.67 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=29.4
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|+|||.| .|.++..+++.+.+.|++|+++..+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 58899999999999999998886543
No 389
>PLN02214 cinnamoyl-CoA reductase
Probab=71.11 E-value=18 Score=37.07 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=29.6
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
+++|||.|+ |-++..+++.+.+.|++|+++....
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 44 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNP 44 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCc
Confidence 578999996 8999999999999999999886543
No 390
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.06 E-value=14 Score=35.97 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=50.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
-=||+|+|..-+.++.+++..|+.++.+--..+.+.....+-...+. ...+-.++.+.+.+++|-|+-.
T Consensus 7 lglIaG~G~LP~~va~~a~~~G~~~~ii~l~~eaD~~~~~~e~~~~~---------iG~vg~lik~l~~~~v~~vVl~ 75 (279)
T COG3494 7 LGLIAGNGSLPLEVAENARNQGYAPFIIGLRGEADPELKEFEYKEVS---------IGEVGKLIKLLKTEGVDRVVLA 75 (279)
T ss_pred EEEEecCCcCcHHHHHHHHhCCCCcEEEEecCccchhhhcCCCeEEe---------HHHHHHHHHHHHHcCCcEEEEe
Confidence 45788999999999999999999988775444444332222222233 4468899999999999987743
No 391
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=71.06 E-value=15 Score=36.51 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=28.9
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 73 kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
+|||.| .|-+|..+++.+.+.|++|++++....
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 499999 599999999999999999999975444
No 392
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.00 E-value=19 Score=38.12 Aligned_cols=85 Identities=11% Similarity=0.146 Sum_probs=51.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.++|+|+|-|-++..+++.+++.|++|++.+.+.+... .....++.+ ..+.+.+ ..++|.|+..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~-~~~~~~~~~----------~~~~~~~-----~~~~dlvV~s 66 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQ-SCPYIHERY----------LENAEEF-----PEQVDLVVRS 66 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccc-hhHHHhhhh----------cCCcHHH-----hcCCCEEEEC
Confidence 46899999999999999999999998887753322110 000111100 0111111 1357888877
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009323 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~ 172 (537)
.|.- ....+.+.+.+.|++++
T Consensus 67 ~gi~-~~~~~l~~A~~~g~~vv 87 (418)
T PRK00683 67 PGIK-KEHPWVQAAIASHIPVV 87 (418)
T ss_pred CCCC-CCcHHHHHHHHCCCcEE
Confidence 6654 33455666677898876
No 393
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.90 E-value=29 Score=34.13 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=29.2
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 47899999 57799999999999999999887544
No 394
>PRK08251 short chain dehydrogenase; Provisional
Probab=70.82 E-value=14 Score=35.45 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=28.8
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~ 36 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRT 36 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999 67899999999999999998886443
No 395
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.76 E-value=16 Score=36.51 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=29.2
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+++||.| .|.+|..+++.+.+.|+++++++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999 48899999999999999999986543
No 396
>PRK06197 short chain dehydrogenase; Provisional
Probab=70.53 E-value=12 Score=37.72 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=29.5
Q ss_pred CCCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
...|+|||.| .+.++..+++.+.+.|++++++..+
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899999 4789999999999999999888644
No 397
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=70.50 E-value=5.5 Score=40.31 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=30.2
Q ss_pred cCCCCCcEEEEEcCcHHHHHHHHHHHHcCC--CEEEEe
Q 009323 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGI--PCVAVY 101 (537)
Q Consensus 66 ~~~~~~~kvLi~g~g~~a~~ii~aa~~~G~--~vv~v~ 101 (537)
|+.+++++|+|+|.|.+|..+++.+++.|+ ++++++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~d 38 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGAD 38 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 456677899999999999999999999996 556553
No 398
>PLN02253 xanthoxin dehydrogenase
Probab=70.47 E-value=18 Score=35.54 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 57899999 5789999999999999999998643
No 399
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=70.47 E-value=5.9 Score=36.10 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=26.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.|+++|+|-|..+..++++++.+|.+|+++..
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~ 54 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEI 54 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-S
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEEC
Confidence 57999999999999999999999999999844
No 400
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=70.44 E-value=23 Score=33.68 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.1
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~ 39 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASS 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999 57899999999999999997776443
No 401
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.40 E-value=18 Score=34.74 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.+++||.| .|.++..+++.+.+.|++++++.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~ 35 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNY 35 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 46899999 57899999999999999987753
No 402
>PRK08309 short chain dehydrogenase; Provisional
Probab=70.37 E-value=27 Score=32.35 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=26.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|+++|.|+..++..+++.+.+.|++|++++.+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECC
Confidence 37899997667778999999999999888644
No 403
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=70.35 E-value=15 Score=39.58 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=57.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHH-HcCCCEEEEecCCCCCCh----hhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDAL----HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~-~~G~~vv~v~~~~d~~~~----~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 145 (537)
.||+.|.+.+..+..+++.+. ++|.+++.+.+....... ...+.+..+.++ ..+..++.+.+++.++|
T Consensus 325 GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~~i~-------d~~~~e~~~~i~~~~pD 397 (457)
T TIGR01284 325 GKKVWVWSGGPKLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIID-------DPNELELEEIIEKYKPD 397 (457)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeEEEe-------CCCHHHHHHHHHhcCCC
Confidence 579999988888889999996 799999887543221111 111223333332 34566778888889999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 146 ~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
.++.+.- + ...+.++|++++
T Consensus 398 llig~~~---~----~~~a~k~gip~~ 417 (457)
T TIGR01284 398 IILTGIR---E----GELAKKLGVPYI 417 (457)
T ss_pred EEEecCC---c----chhhhhcCCCEE
Confidence 9996531 2 235667888876
No 404
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=70.25 E-value=17 Score=36.67 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=28.3
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++|||.| .|-+|..+++.+.+.|++|+++..+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 46899999 5889999999999999998876543
No 405
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.23 E-value=35 Score=36.45 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=56.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhcc---CE-EEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA---DE-SVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~a---d~-~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.++|+|+|.|.++..+++.+.+.|+.|++.+....... ..++- .. .+..+ ..+ +.+. .++|.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~-~~~l~~~~~gi~~~~g-------~~~-~~~~-----~~~d~ 70 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPER-VAQIGKMFDGLVFYTG-------RLK-DALD-----NGFDI 70 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchh-HHHHhhccCCcEEEeC-------CCC-HHHH-----hCCCE
Confidence 47899999999999999999999999888754332211 11111 11 11111 111 1111 35899
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~ 178 (537)
|+-..|....++.+.. +.+.|+++++ ..+.
T Consensus 71 vv~spgi~~~~p~~~~-a~~~~i~v~~-~~~~ 100 (445)
T PRK04308 71 LALSPGISERQPDIEA-FKQNGGRVLG-DIEL 100 (445)
T ss_pred EEECCCCCCCCHHHHH-HHHcCCcEEE-hHHH
Confidence 9987776555665544 4568899873 4444
No 406
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=70.20 E-value=2.9 Score=34.36 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.3
Q ss_pred CcccEEEEEEcCCHHHHHHHHHHhhhcceEeee
Q 009323 452 DSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (537)
Q Consensus 452 ds~ig~vi~~g~~~~ea~~~~~~al~~~~i~g~ 484 (537)
+.++-.|++.|.|.+||.++++++++.+.+.|.
T Consensus 50 GGRvl~v~~~g~tl~eA~~~ay~~i~~I~~~g~ 82 (93)
T PF02843_consen 50 GGRVLTVVALGDTLEEAREKAYEAIEKIDFPGM 82 (93)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHTTSB-TTE
T ss_pred CCeEEEEEEEcCCHHHHHHHHHHHHhccCCCCC
Confidence 345668899999999999999999999999875
No 407
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=70.09 E-value=6.4 Score=41.16 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
++...|+|+|+|..+..++.++.+.|++|.++...
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 44567999999999999999999999999999543
No 408
>PRK06181 short chain dehydrogenase; Provisional
Probab=70.07 E-value=13 Score=36.15 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=27.9
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 72 ~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+++||.|+ |.++..+++.+.+.|++|++++.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARN 34 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999995 889999999999999999988644
No 409
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=70.05 E-value=7.1 Score=41.09 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=29.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
++|+|+|+|.++..++..|.+.|.+|++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 69999999999999999999999999999644
No 410
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.01 E-value=38 Score=32.64 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.+||+|+|.|.++..+++.+.++|+.-+.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lv 51 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLV 51 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 4689999999999999999999999765543
No 411
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.96 E-value=12 Score=35.87 Aligned_cols=34 Identities=6% Similarity=0.053 Sum_probs=29.2
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+++||.|. |.++..+++.+.+.|+.+++++.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 368999996 9999999999999999988886543
No 412
>PRK08329 threonine synthase; Validated
Probab=69.85 E-value=40 Score=34.79 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCEEEeCCCcccccHH-HHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCC
Q 009323 135 VLSAAISRGCTMLHPGYGFLAENAV-FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 135 i~~~a~~~~~d~V~p~~g~~se~~~-~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
-+...+.++++.+.....+ .+... ..++.++.|..++.+..+.......|....+++++.+
T Consensus 142 k~~~~~~~GA~v~~v~~~~-~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~ 203 (347)
T PRK08329 142 KISLLSRLGAELHFVEGDR-MEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIG 203 (347)
T ss_pred HHHHHHHcCCEEEEECCCH-HHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHHcC
Confidence 3455566777777532211 11111 2223344454444332333444556666666666654
No 413
>PRK08628 short chain dehydrogenase; Provisional
Probab=69.62 E-value=23 Score=34.29 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=28.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~ 41 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA 41 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh
Confidence 46899999 57799999999999999998886444
No 414
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=69.61 E-value=1.6e+02 Score=34.07 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEE
Q 009323 315 ALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEM 358 (537)
Q Consensus 315 ~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~~~~-~g~~~~lEi 358 (537)
.++++...++.+.+.++-+.+|. +..+||.++. +|++|++-.
T Consensus 286 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWa~~~~~g~l~iLQa 328 (782)
T TIGR01418 286 SLSDEEILELAKLAVLIEKHYGR--PMDIEWAKDGFDGEIFIVQA 328 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCeEEEEEe
Confidence 48889999999999999999985 7889999984 788999985
No 415
>PRK06701 short chain dehydrogenase; Provisional
Probab=69.58 E-value=22 Score=35.52 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+.|++||.| .+.++..+++.+.+.|++++++...
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357899999 5779999999999999999888654
No 416
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=69.57 E-value=17 Score=42.81 Aligned_cols=88 Identities=9% Similarity=0.107 Sum_probs=59.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhc----cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL----ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~----ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.||+.|.+.+.....+++.++++|.+++.+.+..........+ .+....+. -.|...+.+.+++.++|.
T Consensus 320 GKrv~i~~g~~~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~~~~~vi~-------~~d~~el~~~i~~~~pDL 392 (917)
T PRK14477 320 GKRVVLFTGGVKTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALMHKDAHIIE-------DTSTAGLLRVMREKMPDL 392 (917)
T ss_pred CCEEEEECCCchHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcCCCCEEEE-------CCCHHHHHHHHHhcCCCE
Confidence 6899999988888999999999999998875432221111111 22222221 346788889999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcee
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
++.+. .-..+++++|+|++
T Consensus 393 lig~~-------~~~~~a~k~giP~~ 411 (917)
T PRK14477 393 IVAGG-------KTKFLALKTRTPFL 411 (917)
T ss_pred EEecC-------chhhHHHHcCCCeE
Confidence 99542 12345667888887
No 417
>PRK06475 salicylate hydroxylase; Provisional
Probab=69.49 E-value=8.1 Score=40.61 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=28.9
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
+||+|+|+|..+..++.++++.|++|.++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 6899999999999999999999999999854
No 418
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=69.43 E-value=7 Score=40.21 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=30.4
Q ss_pred EEEEecCCCCCccEEEeCCHHHHHHHHHHHHHHHHH---hcCCCcEEEEeccCC
Q 009323 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA---AFGNDGVYLEKYVQN 274 (537)
Q Consensus 224 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~---~~~~~~~lvEe~I~g 274 (537)
|+||+..|+-|.||..|++.+|+...=++.+..-.. ...-.+++|||=|.-
T Consensus 263 V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T 316 (404)
T PF08886_consen 263 VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYT 316 (404)
T ss_dssp EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE----
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcch
Confidence 899999999999999999999987655544332111 111358999997765
No 419
>PRK06139 short chain dehydrogenase; Provisional
Probab=69.37 E-value=13 Score=38.08 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=29.2
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.|. +.++..+++.+.+.|++++++..+.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~ 41 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDE 41 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 478999995 7899999999999999999886543
No 420
>PRK08198 threonine dehydratase; Provisional
Probab=69.32 E-value=33 Score=36.22 Aligned_cols=98 Identities=23% Similarity=0.283 Sum_probs=60.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.+.|+.+..|..+..++.+|+.+|++++++.+... + ..-++..+.++++.+..+
T Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~--~------------------------~~k~~~~~~~GA~Vi~~~ 123 (404)
T PRK08198 70 ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETA--P------------------------LSKVKATRSYGAEVVLHG 123 (404)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC--C------------------------HHHHHHHHhCCCEEEEEC
Confidence 35788999999999999999999999998843221 0 122445677888888754
Q ss_pred CCccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHC
Q 009323 151 YGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 151 ~g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
.++. +. ....+.+++.|..++.|-.+.......+....+++++.
T Consensus 124 ~~~~-~~~~~a~~~~~~~g~~~~~~~~~~~~~~g~~t~a~EI~~q~ 168 (404)
T PRK08198 124 DVYD-EALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLEILEDL 168 (404)
T ss_pred CCHH-HHHHHHHHHHHhcCCEecCCCCCccHHHHHHHHHHHHHHhC
Confidence 3321 22 23334455567665543212222334466666666664
No 421
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.28 E-value=12 Score=38.04 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=47.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhh-ccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~-~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
.++|||.|.|..+..+++.|+.+|++++++.+.........+ -+|+.+.. .+....+.+.++....++|.++.
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~------~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINV------GDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecC------cccCHHHHHHHHhCCCCCCEEEE
Confidence 468999998888999999999999998887433221111111 14444421 11222345555555566999997
Q ss_pred CCC
Q 009323 150 GYG 152 (537)
Q Consensus 150 ~~g 152 (537)
..|
T Consensus 234 ~~g 236 (337)
T cd08261 234 ATG 236 (337)
T ss_pred CCC
Confidence 764
No 422
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.20 E-value=22 Score=34.40 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.2
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|++++++...
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999 5889999999999999999887543
No 423
>PRK07825 short chain dehydrogenase; Provisional
Probab=69.15 E-value=11 Score=37.02 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.+++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 46899999 58899999999999999988875443
No 424
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=69.14 E-value=0.38 Score=48.98 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=68.0
Q ss_pred HHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeC----CHHHHHHHHHHH
Q 009323 178 SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK----EPDEFVKLLQQA 253 (537)
Q Consensus 178 ~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~----~~~el~~~~~~~ 253 (537)
....+.+|...+..+++.++.+|-.. ...-....++.+++.+|+|++.||..++.+.+..... +.+.+..+...+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~vvfp~lh-G~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~ 123 (317)
T COG1181 45 AGLWMLDKEVTKRVLQKADVVFPVLH-GPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVA 123 (317)
T ss_pred cceEEeccccchhhcccCCEEEEeCC-CCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceee
Confidence 34455566666688888888887654 3344556678889999999999999999888765421 112222111111
Q ss_pred HHHHHHhcCCCcEEEEeccCCCcEEEEEEEEeCCCcEEEE
Q 009323 254 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (537)
Q Consensus 254 ~~~~~~~~~~~~~lvEe~I~g~~e~~v~v~~d~~g~v~~~ 293 (537)
.... ...++++|++..+ ..+-+-|.-++.|..+..
T Consensus 124 ~~~~----~~~~~~~e~~~~~-l~~p~~Vkp~~~gSSvg~ 158 (317)
T COG1181 124 LTRD----EYSSVIVEEVEEG-LGFPLFVKPAREGSSVGR 158 (317)
T ss_pred eecc----cchhHHHHHhhcc-cCCCEEEEcCCccceeeE
Confidence 1100 0146777888888 777777776655544433
No 425
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=69.09 E-value=22 Score=38.32 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=54.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHH-HcCCCEEEEecCCCCCChhhhc----cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009323 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHVKL----ADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~-~~G~~vv~v~~~~d~~~~~~~~----ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~ 144 (537)
..||+.|.+.+.....+++.+. ++|.+++++.+..........+ .+..+.++ ..+.-.+.+.+++.++
T Consensus 326 ~GkrvaI~~~~~~~~~~~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~i~i~-------d~~~~e~~~~~~~~~p 398 (461)
T TIGR01860 326 QGKKMCIWTGGPRLWHWTKALEDDLGMQVVAMSSKFGHQEDFEKVIARGKEGTIYID-------DGNELEFFEVLDLIKP 398 (461)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEEe-------CCCHHHHHHHHHhcCC
Confidence 3689999988888888889998 6999998875432111111111 12223232 1233345566677889
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 145 d~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
|.++.+. . + ...+.++|++++
T Consensus 399 Dliig~s-~--~----~~~A~klgiP~v 419 (461)
T TIGR01860 399 DVIFTGP-R--V----GELVKKLHIPYV 419 (461)
T ss_pred CEEEeCC-c--c----hhhHhhcCCCEE
Confidence 9988542 1 1 235677889886
No 426
>PRK12483 threonine dehydratase; Reviewed
Probab=69.07 E-value=33 Score=37.58 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=27.1
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
+.|+-+.+|..|..++.+|+.+|++++++.+
T Consensus 86 ~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP 116 (521)
T PRK12483 86 RGVITASAGNHAQGVALAAARLGVKAVIVMP 116 (521)
T ss_pred CcEEEECCCHHHHHHHHHHHHhCCCEEEEEC
Confidence 3578888999999999999999999998853
No 427
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=69.07 E-value=21 Score=38.19 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=56.9
Q ss_pred CcEEEEEcCcHHHHHHHH-HHHHcCCCEEEEecCCCCCC---h-hhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009323 71 QEKILVANRGEIAVRVIR-TAHEMGIPCVAVYSTIDKDA---L-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~-aa~~~G~~vv~v~~~~d~~~---~-~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 145 (537)
.|||.|.+.......+.+ .++++|.+++.+.+...... . ...+.+..+.++ ..+..++.+.+++.++|
T Consensus 317 gkrvai~~~~~~~~~~~~~ll~elGm~v~~~~~~~~~~~~~~~~l~~l~~~~~~v~-------~~~~~e~~~~i~~~~pd 389 (443)
T TIGR01862 317 GKRVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYEFAHEDDYEKTMKRMGEGTLLID-------DPNELEFEEILEKLKPD 389 (443)
T ss_pred CCeEEEECCchhHHHHHHHHHHHCCCEEEEeccccccHHHHHHHHHhCCCceEEec-------CCCHHHHHHHHHhcCCC
Confidence 578999877777778888 88999999988743221110 1 122334334343 34556777888888999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcee
Q 009323 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 146 ~V~p~~g~~se~~~~a~~~e~~gi~~~ 172 (537)
.++.+. .-..+++++|++++
T Consensus 390 llig~s-------~~~~~A~~lgip~~ 409 (443)
T TIGR01862 390 IIFSGI-------KEKFVAQKLGVPYR 409 (443)
T ss_pred EEEEcC-------cchhhhhhcCCCeE
Confidence 988432 11345677899886
No 428
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=69.03 E-value=22 Score=36.74 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=45.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCC-hhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~-~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++..+++.|+.+|.+++++....+... ...++ +|..+. +.+.+.+.+.. .++|.|
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~---------~~~~~~~~~~~--~~~D~v 251 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLV---------STDPEKMKAAI--GTMDYI 251 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEc---------CCCHHHHHhhc--CCCCEE
Confidence 467899999999999999999999999887754433221 11122 343332 12223344332 268999
Q ss_pred EeCCC
Q 009323 148 HPGYG 152 (537)
Q Consensus 148 ~p~~g 152 (537)
+-..|
T Consensus 252 id~~g 256 (360)
T PLN02586 252 IDTVS 256 (360)
T ss_pred EECCC
Confidence 97665
No 429
>PRK11579 putative oxidoreductase; Provisional
Probab=68.96 E-value=15 Score=37.77 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=76.3
Q ss_pred cEEEEEcCcHHHHH-HHHHHHHc-CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009323 72 EKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (537)
Q Consensus 72 ~kvLi~g~g~~a~~-ii~aa~~~-G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p 149 (537)
-||.|+|.|.++.. .+.++++. +++++++. +.+.. +.++. + +...-|.+.+++++ ...+|+|+-
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~-d~~~~----~~~~~-~-----~~~~~~~~~~ell~---~~~vD~V~I 70 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVS-SSDAT----KVKAD-W-----PTVTVVSEPQHLFN---DPNIDLIVI 70 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEE-CCCHH----HHHhh-C-----CCCceeCCHHHHhc---CCCCCEEEE
Confidence 48999999999875 56777665 78888775 33321 11111 1 01123667666653 457999986
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC-ccCCCHHHHHHHHH--HhCCcEEE
Q 009323 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--ELGFPVMI 226 (537)
Q Consensus 150 ~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~-~~~~s~~~~~~~~~--~ig~Pvvv 226 (537)
.... ....+.+..+.+.|..++.-.|-+. ...+=..+.+++++.|+..--.+. +.......+++.++ .+|-+..+
T Consensus 71 ~tp~-~~H~~~~~~al~aGkhVl~EKPla~-t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~~ 148 (346)
T PRK11579 71 PTPN-DTHFPLAKAALEAGKHVVVDKPFTV-TLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAYF 148 (346)
T ss_pred cCCc-HHHHHHHHHHHHCCCeEEEeCCCCC-CHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEEE
Confidence 5421 1345666667788887764322211 122223445556677766432211 11223345555554 35656555
Q ss_pred Ee
Q 009323 227 KA 228 (537)
Q Consensus 227 Kp 228 (537)
+.
T Consensus 149 ~~ 150 (346)
T PRK11579 149 ES 150 (346)
T ss_pred EE
Confidence 54
No 430
>PRK05884 short chain dehydrogenase; Provisional
Probab=68.91 E-value=12 Score=35.62 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=27.0
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 73 kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|+||.| .+.++..+++.+.+.|++++++..+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 688998 5889999999999999999988644
No 431
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=68.86 E-value=7.5 Score=39.86 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=30.0
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
|++||.|+|.|.++..++..+.+.|++|++++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEec
Confidence 567899999999999999999999999998853
No 432
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=68.76 E-value=27 Score=34.74 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHH----HcCCCEEEeCCCccccc--H
Q 009323 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI----SRGCTMLHPGYGFLAEN--A 158 (537)
Q Consensus 85 ~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~----~~~~d~V~p~~g~~se~--~ 158 (537)
..+-.++.+|++|.++.+---.+. ..+....-.+. ....++.+++-.. ...+|+|+.|| +-+.. .
T Consensus 19 AA~f~lq~~G~~V~~vpTV~fSnH--tgyg~~~g~v~------~~e~l~~~l~~l~~~~~~~~~davltGY-lgs~~qv~ 89 (281)
T COG2240 19 AAIFPLQRLGLDVWAVPTVQFSNH--TGYGKWTGIVM------PPEQLADLLNGLEAIDKLGECDAVLTGY-LGSAEQVR 89 (281)
T ss_pred hHHHHHHHcCCceeeeceEEecCC--CCCCCCCCcCC------CHHHHHHHHHHHHhcccccccCEEEEcc-CCCHHHHH
Confidence 345678899999988854322222 22211111110 1222334443333 35699999987 33332 1
Q ss_pred HHHHHH---HHCCC-------ceeCCCHHHHHHhcCHHHHH-HHHHHCCCCCCCCc------CccCCCHHHHHHHHHHhC
Q 009323 159 VFVEMC---REHGI-------NFIGPNPDSIRIMGDKSTAR-ETMKNAGVPTVPGS------DGLLQSTEEAVKLADELG 221 (537)
Q Consensus 159 ~~a~~~---e~~gi-------~~~Gp~~~~i~~~~dK~~~r-~~l~~~Gipvp~~~------~~~~~s~~~~~~~~~~ig 221 (537)
..++++ .+.+= |++|-+-...-...-+...+ +++..+.+-+|..+ ...+++.+++.++++.++
T Consensus 90 ~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L~ 169 (281)
T COG2240 90 AIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAVKAARKLG 169 (281)
T ss_pred HHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 222222 22210 23333323333334444444 46667888888753 134788899999988887
Q ss_pred ----CcEEEEecCC-CCCccEEEe
Q 009323 222 ----FPVMIKATAG-GGGRGMRLA 240 (537)
Q Consensus 222 ----~PvvvKp~~g-~gg~Gv~~v 240 (537)
--++||.... ..+.|.+.+
T Consensus 170 ~~gp~~vlVTS~~~~~~~~~~~~~ 193 (281)
T COG2240 170 ADGPKIVLVTSLSRAGMSTGNFEM 193 (281)
T ss_pred hcCCCEEEEecccccCCCCceEEE
Confidence 2378888777 344444443
No 433
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=68.63 E-value=23 Score=34.01 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=28.3
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.|++||.|. +.++..+++.+.+.|+.+++++.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 578999994 78999999999999999998864
No 434
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=68.56 E-value=36 Score=35.64 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=30.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
..|||++..|..+.|..+-++++|.++..+..+
T Consensus 80 gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 80 GDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 569999999999999999999999999999544
No 435
>PLN02427 UDP-apiose/xylose synthase
Probab=68.53 E-value=24 Score=36.76 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=27.1
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHc-CCCEEEEec
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEM-GIPCVAVYS 102 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~-G~~vv~v~~ 102 (537)
|||||.| .|-+|..+++.+.+. |++|++++.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 5899999 599999999999998 599998863
No 436
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=68.45 E-value=26 Score=37.76 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=50.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~ 150 (537)
.||+.|.+....+..+++.+.++|.+++.+.+...... ...+.+..+.+ .|.+.+.+.++ ++|.++.+
T Consensus 311 gkrvai~~~~~~~~~la~~L~elG~~v~~~~~~~~~~~-~~~~~~~~i~~---------~D~~~le~~~~--~~dliig~ 378 (455)
T PRK14476 311 GKRVAIAAEPDLLLALGSFLAEMGAEIVAAVTTTKSPA-LEDLPAEEVLI---------GDLEDLEELAE--GADLLITN 378 (455)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHCCCEEEEEEeCCCcHH-HHhCCcCcEEe---------CCHHHHHHhcc--CCCEEEEC
Confidence 57899999888999999999999999987765432111 11222222222 24445555544 68887743
Q ss_pred CCcccccHHHHHHHHHCCCcee
Q 009323 151 YGFLAENAVFVEMCREHGINFI 172 (537)
Q Consensus 151 ~g~~se~~~~a~~~e~~gi~~~ 172 (537)
. .-...+.++|++++
T Consensus 379 s-------~~~~~a~~~gip~~ 393 (455)
T PRK14476 379 S-------HGRQAAERLGIPLL 393 (455)
T ss_pred c-------hhHHHHHHcCCCEE
Confidence 2 12345556677664
No 437
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=68.37 E-value=44 Score=34.91 Aligned_cols=98 Identities=24% Similarity=0.352 Sum_probs=61.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
+.|+.+..|..+..++.+|+++|++++++.+... + ..-++..+.++++.+..+.
T Consensus 49 ~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~--~------------------------~~k~~~~~~~GA~V~~~~~ 102 (380)
T TIGR01127 49 RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESA--P------------------------PSKVKATKSYGAEVILHGD 102 (380)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC--c------------------------HHHHHHHHHCCCEEEEECC
Confidence 3588888999999999999999999998843221 0 1235567778888887653
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCC
Q 009323 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+. +. ....++.++.|..++.|-.+.......+....+++++.+
T Consensus 103 ~~~-~a~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~ 147 (380)
T TIGR01127 103 DYD-EAYAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIP 147 (380)
T ss_pred CHH-HHHHHHHHHHHhcCCEecCCCCChhhhhhhHHHHHHHHHhCC
Confidence 321 22 223344455676665433223334455666667776653
No 438
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=68.31 E-value=15 Score=36.91 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=28.7
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|+|||.| .|-+|..+++.+.+.|++|+++..+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 6899999 58999999999999999998876443
No 439
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.29 E-value=27 Score=36.23 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
..||||+|.|.++..+++.+.+.|+.-+.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lv 58 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITII 58 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4689999999999999999999999766543
No 440
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.27 E-value=20 Score=34.93 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=28.4
Q ss_pred CcEEEEEcCc---HHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g---~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|.+||.|++ .++..+++.+.+.|+++++++.+
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999964 79999999999999999888654
No 441
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=68.23 E-value=20 Score=36.79 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=28.5
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++|||.| .|-++..+++.+.+.|++|+++..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999 5889999999999999999987543
No 442
>PRK12367 short chain dehydrogenase; Provisional
Probab=68.18 E-value=27 Score=34.04 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=29.0
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.|++||.|+ +.++..+++.+.+.|++++++..+.
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 478999994 7799999999999999999886543
No 443
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=68.13 E-value=9.3 Score=39.14 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=51.4
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhh-hccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~-~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|||.| .|..+.-+++-||.+|..++++.+..+...... .-||+.+... .....+.+.++....++|.|+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~------~~~~~~~v~~~t~g~gvDvv~ 216 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYR------EEDFVEQVRELTGGKGVDVVL 216 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCC------cccHHHHHHHHcCCCCceEEE
Confidence 67899999 788999999999999987776655443322333 3367666421 122345566666666899999
Q ss_pred eCCC
Q 009323 149 PGYG 152 (537)
Q Consensus 149 p~~g 152 (537)
-..|
T Consensus 217 D~vG 220 (326)
T COG0604 217 DTVG 220 (326)
T ss_pred ECCC
Confidence 7665
No 444
>PLN02650 dihydroflavonol-4-reductase
Probab=68.09 E-value=22 Score=36.39 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=28.8
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|+|||.| .|-++..+++.+.+.|++|+++..+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 46899999 5889999999999999999987544
No 445
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=68.08 E-value=46 Score=31.37 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=26.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEE-EEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCV-AVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv-~v~ 101 (537)
..||+|+|.|.++..+++.+-+.|+.-+ +++
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD 50 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVD 50 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 4689999999999999999999999855 553
No 446
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=68.08 E-value=19 Score=38.82 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
+.++|+|+|+|..+...+..+++.|++++++..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~ 172 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDR 172 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 457999999999999999999999999888843
No 447
>PRK06349 homoserine dehydrogenase; Provisional
Probab=68.07 E-value=49 Score=35.27 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=63.1
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc----------CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 009323 72 EKILVANRGEIAVRVIRTAHEM----------GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~----------G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~ 141 (537)
-||.|+|-|.++..+++.+.+. +++++.+.. .+.... .. .+ . +...-+.+.+.++ ..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~-~~~~~~-~~-~~----~---~~~~~~~d~~~ll---~d 70 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAV-RDLEKD-RG-VD----L---PGILLTTDPEELV---ND 70 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEe-CChhhc-cC-CC----C---cccceeCCHHHHh---hC
Confidence 5899999999998887776443 345555542 221110 00 11 0 0011134555554 45
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCC
Q 009323 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (537)
Q Consensus 142 ~~~d~V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipv 199 (537)
..+|+|+-..+...........+.+.|..++..++... ...=..+.++++++|+..
T Consensus 71 ~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~--a~~~~eL~~lA~~~gv~l 126 (426)
T PRK06349 71 PDIDIVVELMGGIEPARELILKALEAGKHVVTANKALL--AVHGAELFAAAEEKGVDL 126 (426)
T ss_pred CCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHH--HHHHHHHHHHHHHcCCcE
Confidence 57999985433211123555566678998886565433 234456667778888763
No 448
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=68.06 E-value=17 Score=35.26 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.9
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .|.++..+++.+.+.|++|++++.+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999 5889999999999999999888654
No 449
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=68.02 E-value=9.1 Score=38.77 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=27.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 73 kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
+|+|+|+|..+.-++..+++.|++|+++...++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999965443
No 450
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=67.99 E-value=20 Score=34.78 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=28.7
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|+++++++.+
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 57999999 5779999999999999999888543
No 451
>PLN02740 Alcohol dehydrogenase-like
Probab=67.96 E-value=24 Score=36.73 Aligned_cols=79 Identities=10% Similarity=0.051 Sum_probs=48.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-CEEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~-~vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++..+++.|+.+|. .|++++.+.+.......+ +|..+... ..+....+.+.++... ++|.|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~----~~~~~~~~~v~~~~~~-g~dvv 272 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPK----DSDKPVHERIREMTGG-GVDYS 272 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecc----cccchHHHHHHHHhCC-CCCEE
Confidence 45799999999999999999999999 487775444333322223 34433211 0000012334444333 79999
Q ss_pred EeCCCc
Q 009323 148 HPGYGF 153 (537)
Q Consensus 148 ~p~~g~ 153 (537)
+-..|.
T Consensus 273 id~~G~ 278 (381)
T PLN02740 273 FECAGN 278 (381)
T ss_pred EECCCC
Confidence 987763
No 452
>PRK09186 flagellin modification protein A; Provisional
Probab=67.84 E-value=19 Score=34.75 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.5
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.| .+.++..+++.+.+.|++++++..+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 47899999 4789999999999999999888544
No 453
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=67.82 E-value=30 Score=34.26 Aligned_cols=127 Identities=16% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHc---CCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEM---GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~---G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
|.+||.|+|-|.++..+++.+..- +++++.|+. .+. .....+++. . .-+.++++++ ...+|.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~-~~~-~~~~~~~~~-~--------~~~~~l~~ll----~~~~Dl 65 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTR-NAA-DLPPALAGR-V--------ALLDGLPGLL----AWRPDL 65 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEec-CCH-HHHHHhhcc-C--------cccCCHHHHh----hcCCCE
Confidence 457999999999999999998763 367777752 222 122333333 1 1244555552 245888
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCC--CCCCCCcCccCCCHHHHHH
Q 009323 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG--VPTVPGSDGLLQSTEEAVK 215 (537)
Q Consensus 147 V~p~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~G--ipvp~~~~~~~~s~~~~~~ 215 (537)
|+-.-+.. -..++...+.+.|..++--|..++..-.=....++.+++.| |-+|.+ .+--.+.+..
T Consensus 66 VVE~A~~~-av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSG---AigGlD~l~a 132 (267)
T PRK13301 66 VVEAAGQQ-AIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAG---AIAGLDYLQA 132 (267)
T ss_pred EEECCCHH-HHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeCh---HHHhHHHHHH
Confidence 88332210 01234444556677766556555432222233344445543 445544 3444455443
No 454
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=67.78 E-value=20 Score=40.38 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=30.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.++|+|+|+|..+...+..++++|++|+++....
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 6899999999999999999999999988885433
No 455
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=67.75 E-value=8.6 Score=39.35 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEEEeCCHH-HHHHHHHHHHH
Q 009323 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD-EFVKLLQQAKS 255 (537)
Q Consensus 193 ~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~-el~~~~~~~~~ 255 (537)
++.-++.+++ ..+.+.++.....+++. -+||||+.|.||+|+.+-.... |.++.++++..
T Consensus 262 eellL~~VpT--~~cg~~~~~~~Vl~~l~-~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~ 322 (330)
T PF04174_consen 262 EELLLPNVPT--WWCGDPEDREYVLANLD-ELVVKPADGYGGKGVYIGPKLSAERRALRAEILA 322 (330)
T ss_dssp S--SSEE-----EETTSHHHHHHHHHSGG-GEEEEE--------EEEGGG--HHHHHHHHHHHH
T ss_pred CCcccCCCCc--EeCCCHHHHHHHHhchh-hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHh
Confidence 4566777777 46888888888877765 5999999999999999853322 77777777654
No 456
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=67.72 E-value=14 Score=37.77 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=54.0
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
..++|||.|.|.++..+++.|+.+|.. +++++.+++......++ +|..+.. .. .+.+++.+. ..++|.|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~----~~---~~~~~~~~~--~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNP----QN---DDLDHYKAE--KGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecC----Cc---ccHHHHhcc--CCCCCEE
Confidence 357899999999999999999999995 66665444333333333 3433321 11 122232221 1248999
Q ss_pred EeCCCcccccHHHHHHHHHCCC-ceeCC
Q 009323 148 HPGYGFLAENAVFVEMCREHGI-NFIGP 174 (537)
Q Consensus 148 ~p~~g~~se~~~~a~~~e~~gi-~~~Gp 174 (537)
+-..|...-.....+.+...|. ..+|.
T Consensus 240 id~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 FEVSGHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 9776642112234455555553 33443
No 457
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=67.65 E-value=16 Score=37.00 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=47.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcC-CCEEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G-~~vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
.++|||.|.+.++..+++.|+.+| .+++++.+..+.......+ +|..+.. +.. ..+.+.++....++|.++
T Consensus 168 ~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~------~~~-~~~~i~~~~~~~~~dvvl 240 (340)
T cd05284 168 GSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNA------SDD-VVEEVRELTGGRGADAVI 240 (340)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcC------Ccc-HHHHHHHHhCCCCCCEEE
Confidence 478999999889999999999999 8888875544322211111 2333321 111 344555555445799999
Q ss_pred eCCC
Q 009323 149 PGYG 152 (537)
Q Consensus 149 p~~g 152 (537)
...|
T Consensus 241 d~~g 244 (340)
T cd05284 241 DFVG 244 (340)
T ss_pred EcCC
Confidence 7665
No 458
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=67.52 E-value=48 Score=34.66 Aligned_cols=169 Identities=12% Similarity=0.089 Sum_probs=91.4
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHc--CCCEEEEecCCCCCC---hhhhccCEEEEcCCCC------------CCCCCCCH
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEM--GIPCVAVYSTIDKDA---LHVKLADESVCIGEAP------------SSQSYLLI 132 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~--G~~vv~v~~~~d~~~---~~~~~ad~~~~i~~~~------------~~~~~~~~ 132 (537)
||+|.|+| .|.++...+..+++. .++++++..+.+... ....+.-+++++.... ..+-+.-.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 47999999 688888888777765 688888864433211 1122222334432110 00012235
Q ss_pred HHHHHHHHHcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHH
Q 009323 133 PNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE 211 (537)
Q Consensus 133 ~~i~~~a~~~~~d~V~p~-~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~ 211 (537)
+.+.+++....+|.|+-. .|+....+ .-.+.+.|.++.-.+.+++-..++ ...+.++++|....| +.|.-
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~p--tl~Ai~aGK~VaLANKEslV~aG~--~i~~~a~~~g~~i~P-----VDSEh 151 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLP--TLAAIRAGKRIALANKESLVCAGE--LVMDAAKKSGAQILP-----VDSEH 151 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHH--HHHHHHCCCcEEEeCHHHHHhhHH--HHHHHHHHcCCeEEE-----ECHHH
Confidence 677788877789998876 34432222 233446788877668888875444 334567788876644 34433
Q ss_pred HH-HHHHHHhCCcEEEEecCCCCCccEEEeCCHHHHHHH
Q 009323 212 EA-VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL 249 (537)
Q Consensus 212 ~~-~~~~~~ig~PvvvKp~~g~gg~Gv~~v~~~~el~~~ 249 (537)
.+ .+..+.-...-|=| ..-+.|-|-++=.+.++|...
T Consensus 152 ~ai~q~l~~~~~~~i~~-iilTASGGpFr~~~~~~l~~v 189 (385)
T PRK05447 152 SAIFQCLPGEKQEGVEK-IILTASGGPFRDWPLEELANV 189 (385)
T ss_pred HHHHHHhcCCCccccce-EEEecCCCcccCCCHHHHhcC
Confidence 33 23332110011222 222334455666666776643
No 459
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=67.38 E-value=26 Score=37.83 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=29.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.++|+|+|+|..+..++..+++.|++|+++...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecC
Confidence 579999999999999999999999999998543
No 460
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.28 E-value=7.4 Score=39.05 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
++++||.|+|.|.++..++..+.+.|++|++++.+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34689999999999999999999999999988543
No 461
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=67.27 E-value=1.2e+02 Score=29.17 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=78.2
Q ss_pred EEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE-eCCCc
Q 009323 75 LVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH-PGYGF 153 (537)
Q Consensus 75 Li~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~-p~~g~ 153 (537)
+.-|+-.+...+.++.++ ++++.+-+...... +.+.. ...+.+.+...|+..++..+. +..+.
T Consensus 6 l~SGGKDS~~al~~a~~~--~~v~~L~t~~~~~~------~s~~~--------H~~~~~~~~~qA~algipl~~~~~~~~ 69 (223)
T TIGR00290 6 LISGGKDSCLALYHALKE--HEVISLVNIMPENE------ESYMF--------HGVNAHLTDLQAESIGIPLIKLYTEGT 69 (223)
T ss_pred EecCcHHHHHHHHHHHHh--CeeEEEEEEecCCC------Ccccc--------cccCHHHHHHHHHHcCCCeEEeecCCC
Confidence 334444566666666666 87766532211111 11110 123566777778888877653 22211
Q ss_pred -ccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCC
Q 009323 154 -LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (537)
Q Consensus 154 -~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~ 232 (537)
..+...+.+.+.+.|+..+ -.-++..-..|.+..+.+.++|+...-. ..-.+.+++.+-.-..||-++|..++..
T Consensus 70 ~e~~~e~l~~~l~~~gv~~v--v~GdI~s~~qr~~~e~v~~~lgl~~~~P--LW~~~~~~ll~e~i~~G~~aiIv~v~a~ 145 (223)
T TIGR00290 70 EEDEVEELKGILHTLDVEAV--VFGAIYSEYQKTRIERVCRELGLKSFAP--LWHRDPEKLMEEFVEEKFEARIIAVAAE 145 (223)
T ss_pred ccHHHHHHHHHHHHcCCCEE--EECCcccHHHHHHHHHHHHhcCCEEecc--ccCCCHHHHHHHHHHcCCeEEEEEEecC
Confidence 1123456667777776532 2334455556888899999999886544 2235666665555578998877766543
No 462
>PRK09291 short chain dehydrogenase; Provisional
Probab=67.23 E-value=9.2 Score=37.01 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|++++||.| .|.++..+++.+.+.|++++++..+
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999 5789999999999999999987543
No 463
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=67.23 E-value=18 Score=34.91 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=28.1
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
|+|||.| .|.++..+++.+.+.|++|+++..+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999 57899999999999999999886543
No 464
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=67.22 E-value=16 Score=36.42 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=47.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
..+|||.|.|..+..+++.|+.+|++ ++++.++.+.......+ ++..+. .......+.+.++....++|.++
T Consensus 130 ~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~l~~~~~~~~vd~vl 203 (312)
T cd08269 130 GKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVT------DDSEAIVERVRELTGGAGADVVI 203 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEec------CCCcCHHHHHHHHcCCCCCCEEE
Confidence 46899999899999999999999999 77764433221111111 122221 01223345566655556799999
Q ss_pred eCCCc
Q 009323 149 PGYGF 153 (537)
Q Consensus 149 p~~g~ 153 (537)
...|.
T Consensus 204 d~~g~ 208 (312)
T cd08269 204 EAVGH 208 (312)
T ss_pred ECCCC
Confidence 87653
No 465
>PRK08328 hypothetical protein; Provisional
Probab=67.15 E-value=57 Score=31.51 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=28.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d 105 (537)
.++|+|+|.|..+..+++.+.++|+.-+.+. |.|
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lv-D~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLI-DEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEE-cCC
Confidence 4689999999999999999999999766543 444
No 466
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.11 E-value=16 Score=37.52 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=28.6
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.+++||.| .+.++..+++.+.+.|++++++..+
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 47899999 5889999999999999999988644
No 467
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.05 E-value=44 Score=34.92 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=26.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCE-EEE
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPC-VAV 100 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~v-v~v 100 (537)
..+||||+|.|..+..++..+.+.|+.- +++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lv 165 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIV 165 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4568999999999999999999999964 455
No 468
>PRK07831 short chain dehydrogenase; Provisional
Probab=67.03 E-value=18 Score=35.21 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=28.2
Q ss_pred CcEEEEEcC-c-HHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANR-G-EIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~-g-~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.|+ | .++..+++.+.+.|+++++++.+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~ 51 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIH 51 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999996 5 69999999999999998887543
No 469
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=66.88 E-value=23 Score=36.94 Aligned_cols=30 Identities=13% Similarity=0.410 Sum_probs=26.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEE-EE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCV-AV 100 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv-~v 100 (537)
..+|||+|.|.++..++..+.+.|+.-+ ++
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~iv 71 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLI 71 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 4689999999999999999999998554 55
No 470
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=66.79 E-value=7.9 Score=42.53 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=28.6
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA 108 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~ 108 (537)
|||.|+|+|..|.-.+++|.+.|++++++....+...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 7999999999999999999999999999876555433
No 471
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=66.69 E-value=9.3 Score=41.18 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~ 106 (537)
.++|+|+|+|..|...++.|++.|++++++....+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v 45 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV 45 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 478999999999999999999999999999654443
No 472
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.67 E-value=20 Score=35.13 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=28.0
Q ss_pred CCCcEEEEEcC---cHHHHHHHHHHHHcCCCEEEEe
Q 009323 69 CRQEKILVANR---GEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~kvLi~g~---g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
...|++||.|+ +.++..+++.+.+.|+++++++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~ 39 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTY 39 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEc
Confidence 34578999994 5799999999999999998874
No 473
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=66.61 E-value=31 Score=32.25 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=74.6
Q ss_pred CcEEEEEc-CcHH---------HHHHHHHHHHcCCCEEEEecCCCCCChhhhccC-EEEEcCCCCCCCCC----CCHHHH
Q 009323 71 QEKILVAN-RGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSY----LLIPNV 135 (537)
Q Consensus 71 ~~kvLi~g-~g~~---------a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad-~~~~i~~~~~~~~~----~~~~~i 135 (537)
|+||.|+| +|.. +..+...+.+.|+++.+.+...........+-. +.+.++ .+...+. .|...+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~-~~~~g~~~si~yd~~sl 79 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP-APKNGSAESIIYDFLSL 79 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC-CCCCCchHHHHHHHHHH
Confidence 58999999 5554 467778888889998887654443222222222 233342 2222111 133344
Q ss_pred HHHHHH-----cCCCEEEe-CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhcCHHH--HHHHH---HHCCCCCCCCcC
Q 009323 136 LSAAIS-----RGCTMLHP-GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKST--ARETM---KNAGVPTVPGSD 204 (537)
Q Consensus 136 ~~~a~~-----~~~d~V~p-~~g~~se~~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~--~r~~l---~~~Gipvp~~~~ 204 (537)
...+.. .+.|.++- +++...-...+.+.+...|++++ -+.+-++.-++|+. .|..+ ++..+....
T Consensus 80 ~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~-vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad--- 155 (185)
T PF09314_consen 80 LHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVV-VNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYAD--- 155 (185)
T ss_pred HHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEE-ECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCC---
Confidence 444421 13455552 22200011245566666777776 47899999999973 23333 344444443
Q ss_pred ccCCCHHHHHHHH
Q 009323 205 GLLQSTEEAVKLA 217 (537)
Q Consensus 205 ~~~~s~~~~~~~~ 217 (537)
.++.|...+++..
T Consensus 156 ~lIaDs~~I~~y~ 168 (185)
T PF09314_consen 156 RLIADSKGIQDYI 168 (185)
T ss_pred EEEEcCHHHHHHH
Confidence 3455555555544
No 474
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=66.50 E-value=43 Score=31.31 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=60.6
Q ss_pred CcEEEEEcCcHHHHHHH--HHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009323 71 QEKILVANRGEIAVRVI--RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii--~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~ 148 (537)
+.++.|+|.|.++..++ +-.++.|.+++.+. |.++........| +. -.+.+.+....++.++|..+
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~~VG~~~~~--v~---------V~~~d~le~~v~~~dv~iai 151 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAF-DVDPDKVGTKIGD--VP---------VYDLDDLEKFVKKNDVEIAI 151 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEe-cCCHHHhCcccCC--ee---------eechHHHHHHHHhcCccEEE
Confidence 67899999999998877 44678899988775 4454444555566 32 23678899999998888666
Q ss_pred eCCCcccccH-HHHHHHHHCCCcee
Q 009323 149 PGYGFLAENA-VFVEMCREHGINFI 172 (537)
Q Consensus 149 p~~g~~se~~-~~a~~~e~~gi~~~ 172 (537)
-+. .++.+ ..++.+.+.|+.-+
T Consensus 152 LtV--Pa~~AQ~vad~Lv~aGVkGI 174 (211)
T COG2344 152 LTV--PAEHAQEVADRLVKAGVKGI 174 (211)
T ss_pred EEc--cHHHHHHHHHHHHHcCCceE
Confidence 432 12443 55667777777533
No 475
>PRK10637 cysG siroheme synthase; Provisional
Probab=66.48 E-value=19 Score=38.69 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=28.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.++|||+|+|..|.+=++.+.+.|-+++++..
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 47999999999999989999999999988843
No 476
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=66.47 E-value=24 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.2
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.+++||.| .|.++..+++.+.+.|+.+++...
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~ 38 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGT 38 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcC
Confidence 47899999 688999999999999997776643
No 477
>PRK05867 short chain dehydrogenase; Provisional
Probab=66.42 E-value=20 Score=34.75 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=28.7
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|++||.|+ +.++..+++.+.+.|+++++++.+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999995 789999999999999999988644
No 478
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=66.30 E-value=19 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=27.4
Q ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 72 ~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+++||.| .+.++..+++.+.+.|+++++++.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRN 33 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3799999 5779999999999999999888644
No 479
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=66.15 E-value=19 Score=36.44 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE--eC-CCcccccHH
Q 009323 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH--PG-YGFLAENAV 159 (537)
Q Consensus 83 a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~--p~-~g~~se~~~ 159 (537)
.+.=|+++.+.|.+++=+..+....+.....--+...+ |-..+..+.-.++-.+-+.++|.+= || +|+..-...
T Consensus 38 Tv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~v---PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 38 TVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNV---PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCC---CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 45668899999999987754443332222211111111 1111222223555555567777654 44 454322256
Q ss_pred HHHHHHHCCCce-eCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCccCCCHHHHHHHHHHhCCcEEEEecCCCCCccEE
Q 009323 160 FVEMCREHGINF-IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238 (537)
Q Consensus 160 ~a~~~e~~gi~~-~Gp~~~~i~~~~dK~~~r~~l~~~Gipvp~~~~~~~~s~~~~~~~~~~ig~PvvvKp~~g~gg~Gv~ 238 (537)
+.+.+.+.|+++ +|-+..++ -++++++.|-|+|+. .+.|.-.-.+.+++++|+=++= -.
T Consensus 115 vVe~Ak~~g~piRIGVN~GSL--------ek~~~~ky~~pt~ea---lveSAl~~a~~~e~l~f~~i~i---------S~ 174 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGSL--------EKRLLEKYGGPTPEA---LVESALEHAELLEELGFDDIKV---------SV 174 (361)
T ss_pred HHHHHHHcCCCEEEecccCch--------hHHHHHHhcCCCHHH---HHHHHHHHHHHHHHCCCCcEEE---------EE
Confidence 677788889875 67665544 356778888888875 5666555566788999982211 12
Q ss_pred EeCCHHHHHHHHHHHHHH
Q 009323 239 LAKEPDEFVKLLQQAKSE 256 (537)
Q Consensus 239 ~v~~~~el~~~~~~~~~~ 256 (537)
+..+..++.++++.+...
T Consensus 175 K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 175 KASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EcCCHHHHHHHHHHHHHh
Confidence 456788888888876543
No 480
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=66.06 E-value=27 Score=34.75 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=26.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCC-EEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~-vv~v~ 101 (537)
..+|+|+|.|..+..+++.+.+.|+. +++++
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD 61 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLID 61 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEe
Confidence 46899999999999999999999965 45553
No 481
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=66.06 E-value=40 Score=35.48 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=27.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
..||||+|.|.++..++..+.+.|+..+.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lv 72 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIV 72 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4689999999999999999999999765543
No 482
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=66.00 E-value=92 Score=30.06 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 69 ~~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.+.+||+|.|-|..+..+++.+.+.|.+++.+.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~ 61 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVS 61 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 346899999999999999999999999999664
No 483
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.00 E-value=9.1 Score=41.64 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+.++|.|+|+|..|...++.+.+.|++|+++...
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR 47 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR 47 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEecc
Confidence 3579999999999999999999999999998643
No 484
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=65.98 E-value=21 Score=36.21 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=51.8
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhh----hccC--EEEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~----~~ad--~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 143 (537)
.++|||.| .|-++-...-++.+.|+.|++++.-.+...... ++.+ ..+.+. .-+..|.+.|.++-++.+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~----~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFV----EGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEE----EeccCCHHHHHHHHhhcC
Confidence 46899999 688999999999999999999976444333222 2233 112110 113567888888888888
Q ss_pred CCEEE
Q 009323 144 CTMLH 148 (537)
Q Consensus 144 ~d~V~ 148 (537)
+|+|+
T Consensus 78 fd~V~ 82 (343)
T KOG1371|consen 78 FDAVM 82 (343)
T ss_pred CceEE
Confidence 99888
No 485
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=65.98 E-value=16 Score=39.28 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=29.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
...|+|+|+|+.+...+..+.+.|++|+++..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 45899999999999999999999999999953
No 486
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.96 E-value=40 Score=36.63 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=54.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCE----EEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE----SVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~----~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~ 146 (537)
.++|+|+|-|.++..+++.++++|++|.+.+....... ...+... .+..+ ++ +. ..+ .++|.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~-~~~L~~~~~~~~~~~g------~~-~~-~~~-----~~~d~ 72 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPN-LAALRAELPDAEFVGG------PF-DP-ALL-----DGVDL 72 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchh-HHHHHhhcCCcEEEeC------CC-ch-hHh-----cCCCE
Confidence 46899999999999999999999999988754332111 1112111 12211 01 11 111 25788
Q ss_pred EEeCCCccccc---HHHHHHHHHCCCceeCCCHHHH
Q 009323 147 LHPGYGFLAEN---AVFVEMCREHGINFIGPNPDSI 179 (537)
Q Consensus 147 V~p~~g~~se~---~~~a~~~e~~gi~~~Gp~~~~i 179 (537)
|+-..|....+ ......+.+.|+++++ ..+.+
T Consensus 73 vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~-~~e~~ 107 (498)
T PRK02006 73 VALSPGLSPLEAALAPLVAAARERGIPVWG-EIELF 107 (498)
T ss_pred EEECCCCCCcccccCHHHHHHHHCCCcEEE-HHHHH
Confidence 88766544333 1334445678999873 44443
No 487
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=65.88 E-value=10 Score=39.74 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
|..+|+|+|+|..+..++..+++.|++|+++...
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECC
Confidence 3468999999999999999999999999999543
No 488
>PRK06196 oxidoreductase; Provisional
Probab=65.83 E-value=12 Score=37.74 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=28.6
Q ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~-g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
.|+|||.|+ |.++..+++.+.+.|++|+++..+
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999995 779999999999999999988644
No 489
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.83 E-value=45 Score=32.22 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCcEEEEEcCc---HHHHHHHHHHHHcCCCEEEEecC
Q 009323 70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 70 ~~~kvLi~g~g---~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
+.|++||.|++ .++..+++.+.+.|+.+++++..
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 34789999974 69999999999999999988643
No 490
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=65.80 E-value=7.9 Score=39.22 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=29.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
+++|.|+|.|.+|..++..+.+.|++|++++.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~ 33 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDA 33 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeC
Confidence 46899999999999999999999999998853
No 491
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=65.75 E-value=14 Score=37.41 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=47.0
Q ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhc-cCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009323 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (537)
Q Consensus 70 ~~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~-ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V 147 (537)
...+|||.| .|.++..+++.|+.+|.+++++.+..+.......+ +|..+... +..+....+......++|.|
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~------~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYK------TVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEecc------ccccHHHHHHHhCCCCeEEE
Confidence 357899999 59999999999999999988775443322211222 34444211 11133344433333468999
Q ss_pred EeCCC
Q 009323 148 HPGYG 152 (537)
Q Consensus 148 ~p~~g 152 (537)
+-..|
T Consensus 212 ~d~~G 216 (325)
T TIGR02825 212 FDNVG 216 (325)
T ss_pred EECCC
Confidence 97665
No 492
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=65.75 E-value=29 Score=36.96 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=29.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
...|+|+|+|..+...+..+.+.|.+|+++...
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 346999999999999999999999999999643
No 493
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.68 E-value=17 Score=34.68 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=29.0
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEecCC
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~~~ 104 (537)
.++|||.| .|.++..+++.+.+.|++|++++.+.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999 47799999999999999999886543
No 494
>PRK12744 short chain dehydrogenase; Provisional
Probab=65.63 E-value=47 Score=32.10 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.4
Q ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g-~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.|++||.| .+.++..+++.+.+.|++++++..
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 37899999 677999999999999999777753
No 495
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=65.18 E-value=56 Score=33.22 Aligned_cols=31 Identities=19% Similarity=0.495 Sum_probs=28.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEe
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~ 101 (537)
.+.|+....|..+..++.+|+.+|++++++.
T Consensus 51 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~ 81 (316)
T cd06448 51 CVHVVCSSGGNAGLAAAYAARKLGVPCTIVV 81 (316)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 4678888999999999999999999999884
No 496
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=65.17 E-value=8.5 Score=38.62 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=29.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
++||.|+|.|.++..++..+...|++|++++.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~ 34 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDV 34 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeC
Confidence 68999999999999999999999999998853
No 497
>PRK06815 hypothetical protein; Provisional
Probab=65.09 E-value=56 Score=33.18 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=56.7
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
+.|+....|..+..++.+|+.+|++++++.+... . ..-+...+.++++.+....
T Consensus 69 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~--~------------------------~~k~~~~~~~GA~V~~~~~ 122 (317)
T PRK06815 69 QGVITASSGNHGQGVALAAKLAGIPVTVYAPEQA--S------------------------AIKLDAIRALGAEVRLYGG 122 (317)
T ss_pred ceEEEECCChHHHHHHHHHHHhCCCEEEEECCCC--C------------------------HHHHHHHHHCCCEEEEECC
Confidence 4577788999999999999999999988842211 0 1234455777888776443
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHCC
Q 009323 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (537)
Q Consensus 152 g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~G 196 (537)
.+. +. ....+..++.+..++.|-.+......-+....+++++.+
T Consensus 123 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~ 167 (317)
T PRK06815 123 DAL-NAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELVEQQP 167 (317)
T ss_pred CHH-HHHHHHHHHHHhcCCEEecCCCChhhhcchhHHHHHHHHhcC
Confidence 221 11 122233444565555442122223345556666666553
No 498
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=65.05 E-value=11 Score=39.59 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=29.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCCEEEEecC
Q 009323 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (537)
Q Consensus 71 ~~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~ 103 (537)
..+|+|+|+|..+..++..+++.|++|+++...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 468999999999999999999999999999543
No 499
>PRK08638 threonine dehydratase; Validated
Probab=65.04 E-value=52 Score=33.78 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=57.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCCEEEEecCCCCCChhhhccCEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009323 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (537)
Q Consensus 72 ~kvLi~g~g~~a~~ii~aa~~~G~~vv~v~~~~d~~~~~~~~ad~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d~V~p~~ 151 (537)
+.|+....|..+..++..|+.+|++++++.++.. + ..-++..+.++++.+....
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~--~------------------------~~k~~~~~~~GA~V~~~~~ 129 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGA--P------------------------KSKVAATCGYGAEVVLHGD 129 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCC--c------------------------HHHHHHHHHcCCEEEEECc
Confidence 4688888999999999999999999998843211 1 1224455677887776532
Q ss_pred Cccccc-HHHHHHHHHCCCceeCCCHHHHHHhcCHHHHHHHHHHC
Q 009323 152 GFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNA 195 (537)
Q Consensus 152 g~~se~-~~~a~~~e~~gi~~~Gp~~~~i~~~~dK~~~r~~l~~~ 195 (537)
++ .+. ....+.+++.|..++.|-.+.......+....+++++.
T Consensus 130 ~~-~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~a~Ei~~q~ 173 (333)
T PRK08638 130 NF-NDTIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLEILEDL 173 (333)
T ss_pred CH-HHHHHHHHHHHHhcCCEEcCcCCCcchhccccHHHHHHHhhc
Confidence 22 122 22333445556544433212233444566666666654
No 500
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.97 E-value=19 Score=35.54 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.1
Q ss_pred CcEEEEEcCc---HHHHHHHHHHHHcCCCEEEEec
Q 009323 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYS 102 (537)
Q Consensus 71 ~~kvLi~g~g---~~a~~ii~aa~~~G~~vv~v~~ 102 (537)
.|.+||.|++ .++..+++.+.+.|++|++++.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 4789999976 7999999999999999988753
Done!