BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009324
         (537 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
           Entamoeba Histolytica.
 pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
           Entamoeba Histolytica.
 pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
           Entamoeba Histolytica.
 pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
           Entamoeba Histolytica
          Length = 395

 Score = 34.7 bits (78), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 149 IIARKLESDASL--TSSEKKALRDLGGESGTVLAVEIALKSIADENNN-GGVELDELSIS 205
           I+ R +E+D S      EK  L D          VEI LK I D+  N  GV     S S
Sbjct: 139 IMIRIMENDTSAGHVFGEKFGLHDD--------EVEIVLKEIKDKGLNLDGVHFHVGSDS 190

Query: 206 GKSRVMVLSIDKVRLLKELPESVPVKPDLIEGGGATNQ 243
             S V   ++ K R    L E   +KP LI+ GG  +Q
Sbjct: 191 HNSEVFTKALTKARNTVTLAEQFGMKPYLIDIGGGFSQ 228


>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
           (Maox3)
 pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
           (Maox3)
 pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
           (Maox3)
 pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
           (Maox3)
          Length = 1335

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 4   GAAVTKEESVGSIKTQRSKLESRIESQHNTHLDLLS 39
           GAAVT  E +GS KT+   ++ RI   H T     +
Sbjct: 86  GAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCT 121


>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
          Length = 456

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 320 SKAGEELLDLIQRPTAKETAVAAKFKSKG 348
           +K GE++LDL   P  K T +AA+ K KG
Sbjct: 103 AKPGEKVLDLCAAPGGKSTQLAAQXKGKG 131


>pdb|3MBF|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
           Encephalitozoon Cuniculi, Bound To Fructose
           1,6-Bisphosphate
 pdb|3MBD|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
           Encephalitozoon Cuniculi, Bound To Phosphate
 pdb|3QRH|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
           Encephalitozoon Cuniculi, Bound To Glyceraldehyde
           3-Phosphate
          Length = 342

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 16/110 (14%)

Query: 314 YKESQRSKAGEELLDLIQRPTAKETAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSFAA 373
           YKE ++   G E LDL  + +A + A  AK++S     +  +   +  EDC  +  S  A
Sbjct: 113 YKEKEKISVGLEDLDLRCKSSAFKDATFAKWRS-----LFYFYDGIPSEDCINENCSILA 167

Query: 374 -----CEKVHFRRIIAPHTDISLGDCSF---LDTCRHMKTC--KYIHYEL 413
                C+K     I+ P   +  GD S     +  R + +   KY++YEL
Sbjct: 168 KYAIICQKNGLVPIVEPEVFLE-GDYSMKRSYEVTRQILSTLMKYLNYEL 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,554,783
Number of Sequences: 62578
Number of extensions: 494081
Number of successful extensions: 1081
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 6
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)