Query 009324
Match_columns 537
No_of_seqs 185 out of 401
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 23:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2098 Predicted N6-adenine R 100.0 9E-102 2E-106 797.3 17.6 447 11-536 9-458 (591)
2 COG4725 IME4 Transcriptional a 99.9 3.6E-24 7.8E-29 201.1 5.2 88 450-537 1-89 (198)
3 PF05063 MT-A70: MT-A70 ; Int 99.9 6E-22 1.3E-26 181.0 7.4 69 468-536 1-78 (176)
4 KOG2097 Predicted N6-adenine m 99.6 1.7E-15 3.6E-20 153.4 4.6 90 447-536 139-237 (397)
5 KOG2356 Transcriptional activa 99.0 6.1E-10 1.3E-14 113.5 5.3 87 450-536 164-261 (366)
6 PRK11524 putative methyltransf 94.6 0.05 1.1E-06 54.0 5.1 87 449-536 8-104 (284)
7 PF13659 Methyltransf_26: Meth 94.0 0.0087 1.9E-07 49.6 -1.5 63 449-512 51-116 (117)
8 PF01555 N6_N4_Mtase: DNA meth 93.2 0.037 8E-07 49.9 1.1 68 469-536 2-84 (231)
9 TIGR03534 RF_mod_PrmC protein- 93.1 0.16 3.6E-06 47.5 5.2 82 450-533 139-239 (251)
10 PRK13699 putative methylase; P 91.4 0.46 1E-05 46.4 6.2 71 466-536 19-97 (227)
11 PF10237 N6-adenineMlase: Prob 91.2 0.19 4.2E-06 47.5 3.3 54 466-532 85-141 (162)
12 TIGR01177 conserved hypothetic 89.8 0.39 8.4E-06 48.6 4.3 76 450-528 232-309 (329)
13 PRK09328 N5-glutamine S-adenos 89.7 0.83 1.8E-05 43.8 6.2 82 449-532 159-259 (275)
14 KOG2098 Predicted N6-adenine R 89.0 0.1 2.2E-06 57.1 -0.5 62 304-371 169-235 (591)
15 TIGR00138 gidB 16S rRNA methyl 85.7 1.5 3.3E-05 41.1 5.3 70 450-532 94-166 (181)
16 TIGR02085 meth_trns_rumB 23S r 85.3 1.5 3.2E-05 45.7 5.4 74 449-534 282-355 (374)
17 TIGR03704 PrmC_rel_meth putati 85.2 1.1 2.4E-05 44.1 4.3 81 451-531 136-236 (251)
18 TIGR00537 hemK_rel_arch HemK-r 83.3 3.1 6.7E-05 38.0 6.0 81 450-533 68-163 (179)
19 PRK03522 rumB 23S rRNA methylu 82.4 2.3 5E-05 42.9 5.3 74 449-534 222-295 (315)
20 PF05175 MTS: Methyltransferas 77.3 0.42 9.2E-06 43.7 -1.6 73 450-527 83-155 (170)
21 PRK11783 rlmL 23S rRNA m(2)G24 77.2 2 4.4E-05 48.4 3.3 84 450-533 591-678 (702)
22 PHA03411 putative methyltransf 76.5 6.6 0.00014 40.6 6.4 80 449-531 110-210 (279)
23 PRK10909 rsmD 16S rRNA m(2)G96 75.7 1.6 3.5E-05 42.1 1.8 55 450-511 104-159 (199)
24 TIGR03533 L3_gln_methyl protei 75.4 7.4 0.00016 39.1 6.4 78 450-530 174-269 (284)
25 PF09445 Methyltransf_15: RNA 74.6 1.1 2.4E-05 42.7 0.3 29 450-478 50-80 (163)
26 cd02440 AdoMet_MTases S-adenos 73.4 2.7 5.9E-05 31.6 2.1 56 449-510 48-103 (107)
27 PRK14967 putative methyltransf 72.4 8 0.00017 36.8 5.5 83 450-534 86-183 (223)
28 PF01861 DUF43: Protein of unk 72.2 2.5 5.5E-05 43.0 2.2 78 449-534 93-177 (243)
29 PF01170 UPF0020: Putative RNA 71.9 2.2 4.7E-05 40.1 1.6 67 450-523 90-162 (179)
30 TIGR00479 rumA 23S rRNA (uraci 71.8 9.4 0.0002 40.0 6.4 76 450-535 342-420 (431)
31 COG4123 Predicted O-methyltran 71.0 5.3 0.00012 40.6 4.2 82 450-531 97-190 (248)
32 PRK14966 unknown domain/N5-glu 69.9 10 0.00022 41.3 6.3 83 450-532 302-402 (423)
33 PRK14968 putative methyltransf 69.6 12 0.00027 33.3 5.8 81 450-532 75-170 (188)
34 COG2263 Predicted RNA methylas 67.3 3.7 8.1E-05 40.8 2.2 71 388-480 51-121 (198)
35 PF03602 Cons_hypoth95: Conser 66.6 3.1 6.7E-05 39.6 1.5 31 450-480 94-127 (183)
36 TIGR00536 hemK_fam HemK family 65.9 14 0.00031 36.7 6.0 80 450-531 167-265 (284)
37 PRK13168 rumA 23S rRNA m(5)U19 65.3 9 0.00019 40.7 4.7 75 449-534 346-423 (443)
38 PRK00811 spermidine synthase; 65.2 3.9 8.4E-05 41.0 1.9 61 451-516 134-196 (283)
39 PRK11805 N5-glutamine S-adenos 64.2 19 0.00041 36.8 6.6 78 450-530 186-281 (307)
40 PRK03612 spermidine synthase; 63.5 8.3 0.00018 42.1 4.1 77 451-529 357-438 (521)
41 PF14608 zf-CCCH_2: Zinc finge 61.5 5 0.00011 26.0 1.3 19 393-411 1-19 (19)
42 COG0742 N6-adenine-specific me 59.4 8.7 0.00019 37.7 3.1 31 449-479 94-126 (187)
43 PHA03412 putative methyltransf 58.0 7.5 0.00016 39.5 2.5 29 450-480 99-127 (241)
44 KOG3350 Uncharacterized conser 52.7 5.9 0.00013 39.7 0.8 16 464-479 132-147 (217)
45 PRK05031 tRNA (uracil-5-)-meth 51.3 31 0.00067 36.0 5.7 55 467-534 288-342 (362)
46 PRK15128 23S rRNA m(5)C1962 me 51.2 4.4 9.5E-05 43.0 -0.4 67 450-516 273-344 (396)
47 PRK01544 bifunctional N5-gluta 50.2 38 0.00082 37.2 6.4 81 450-532 191-290 (506)
48 TIGR00417 speE spermidine synt 49.7 9.6 0.00021 37.7 1.7 63 451-516 129-191 (270)
49 COG1041 Predicted DNA modifica 47.2 23 0.0005 37.9 4.1 78 451-535 248-330 (347)
50 PF10672 Methyltrans_SAM: S-ad 46.4 9.6 0.00021 39.3 1.1 67 449-516 175-243 (286)
51 PRK04457 spermidine synthase; 45.6 19 0.00041 35.9 3.0 70 451-523 120-191 (262)
52 COG0863 DNA modification methy 43.6 56 0.0012 31.6 5.8 70 467-536 35-124 (302)
53 PF05116 S6PP: Sucrose-6F-phos 43.1 29 0.00063 34.1 3.9 27 503-529 33-59 (247)
54 PRK01581 speE spermidine synth 42.2 32 0.0007 37.2 4.3 64 450-515 209-272 (374)
55 PRK09489 rsmC 16S ribosomal RN 41.3 21 0.00046 37.2 2.8 62 450-517 247-308 (342)
56 COG1092 Predicted SAM-dependen 40.2 14 0.00031 39.8 1.3 67 449-515 269-340 (393)
57 TIGR00095 RNA methyltransferas 38.2 19 0.0004 34.3 1.6 30 450-479 101-133 (189)
58 PRK15043 transcriptional regul 36.9 42 0.00091 34.3 3.9 48 466-530 188-238 (243)
59 PRK10258 biotin biosynthesis p 35.0 1.1E+02 0.0024 29.4 6.3 28 450-478 87-114 (251)
60 PRK15001 SAM-dependent 23S rib 32.9 46 0.00099 35.6 3.6 70 450-527 283-355 (378)
61 PRK11036 putative S-adenosyl-L 32.3 54 0.0012 31.9 3.8 26 450-475 95-120 (255)
62 PRK11783 rlmL 23S rRNA m(2)G24 32.1 31 0.00066 39.3 2.3 31 450-480 285-316 (702)
63 cd04883 ACT_AcuB C-terminal AC 31.9 63 0.0014 24.9 3.4 28 504-531 42-69 (72)
64 TIGR00446 nop2p NOL1/NOP2/sun 31.5 25 0.00055 34.8 1.4 29 450-479 124-152 (264)
65 PF12847 Methyltransf_18: Meth 30.9 37 0.0008 27.8 2.1 26 449-475 53-78 (112)
66 KOG2671 Putative RNA methylase 30.5 29 0.00064 37.9 1.8 111 388-512 214-355 (421)
67 smart00356 ZnF_C3H1 zinc finge 30.1 30 0.00064 22.6 1.1 12 399-410 14-25 (27)
68 PF02086 MethyltransfD12: D12 29.3 15 0.00033 34.8 -0.5 79 454-533 164-256 (260)
69 PRK10742 putative methyltransf 29.2 30 0.00065 35.5 1.5 14 467-480 164-177 (250)
70 PRK00377 cbiT cobalt-precorrin 27.5 94 0.002 29.1 4.4 71 450-530 94-165 (198)
71 PRK00107 gidB 16S rRNA methylt 26.3 1.8E+02 0.0039 27.9 6.1 73 450-535 97-169 (187)
72 PLN02823 spermine synthase 26.1 56 0.0012 34.4 2.9 61 451-513 160-222 (336)
73 TIGR01485 SPP_plant-cyano sucr 25.8 44 0.00095 32.2 1.9 31 499-529 31-61 (249)
74 PRK14902 16S rRNA methyltransf 25.6 47 0.001 35.3 2.2 29 450-478 303-331 (444)
75 PF13847 Methyltransf_31: Meth 25.5 56 0.0012 28.9 2.4 27 450-477 56-83 (152)
76 TIGR02987 met_A_Alw26 type II 24.6 47 0.001 36.0 2.1 16 465-480 110-125 (524)
77 KOG3420 Predicted RNA methylas 24.2 49 0.0011 32.7 1.9 30 450-480 98-127 (185)
78 COG0116 Predicted N6-adenine-s 24.2 55 0.0012 35.6 2.4 31 449-480 282-312 (381)
79 smart00650 rADc Ribosomal RNA 24.1 60 0.0013 29.6 2.4 29 450-479 61-89 (169)
80 PF07669 Eco57I: Eco57I restri 23.7 47 0.001 28.8 1.5 15 467-481 2-16 (106)
81 TIGR00091 tRNA (guanine-N(7)-) 23.6 75 0.0016 29.8 3.0 82 450-532 68-155 (194)
82 cd00315 Cyt_C5_DNA_methylase C 22.5 1.4E+02 0.003 30.0 4.8 86 449-535 43-143 (275)
83 PRK14903 16S rRNA methyltransf 22.5 47 0.001 35.6 1.6 29 450-478 290-318 (431)
84 PRK11486 flagellar biosynthesi 22.1 94 0.002 29.1 3.2 46 176-221 30-79 (124)
85 PF01564 Spermine_synth: Sperm 21.4 17 0.00036 36.1 -1.9 63 451-516 133-196 (246)
86 PLN02672 methionine S-methyltr 21.1 1.7E+02 0.0037 35.9 5.8 83 450-532 186-300 (1082)
87 TIGR00438 rrmJ cell division p 20.7 2.4E+02 0.0051 26.1 5.6 26 451-476 75-107 (188)
88 cd05491 Bromo_TBP7_like Bromod 20.1 77 0.0017 29.6 2.2 26 140-165 60-85 (119)
No 1
>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]
Probab=100.00 E-value=9.2e-102 Score=797.28 Aligned_cols=447 Identities=39% Similarity=0.579 Sum_probs=375.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhHHHhhhhhccCccccccchhhhhhhcCCCCCCCCCCCCCCCCCCCCcccccccC
Q 009324 11 ESVGSIKTQRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYNPTPPLPEIPKLPPKSLTAVHLS 90 (537)
Q Consensus 11 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~s~q~~vp~~v~sld~sl~~~~~fn~~~~~~tp~~~~~~~~~~~~~~~~~~~ 90 (537)
.....++++|.+||.|+.+ |..|+||+.+.+.|||.+++|+|.+|+.++||-.+||+.| ++|+-.
T Consensus 9 a~~t~~~~lr~rle~r~k~-~d~hldl~~~~~~lv~~~~~s~d~vl~a~sS~~~lp~vas-~v~e~~------------- 73 (591)
T KOG2098|consen 9 AHKTQLDSLRERLERRRKQ-DDGHLDLRNPEAALVPTLFRSDDPVLTAPSSGGPLPSVAS-AVPELA------------- 73 (591)
T ss_pred hHHHHHHHHHHHHHHhhcc-cccchhhcCchhhhchhhhhccchhhhccccCCCCCchhh-cCcccc-------------
Confidence 3456678899999999876 9999999999999999999999999999999999999999 666621
Q ss_pred CCCCCCCCcccccCCCcccchh-hhhhccCCCCChHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhccccCChhhHHHhh
Q 009324 91 QGPPSANDDYLVRSPETGRDQR-AAKFAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALR 169 (537)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~vr~mva~~ll~~~~~~pids~~i~~~l~~~~~~~~~~k~a~~ 169 (537)
.++.|- -+| -..-+-+....|.++|+ .|++.+||+.|.++..|++++ +|+++-++|+++..
T Consensus 74 ------~~~ele-------kl~~~~~~a~q~~~~~~dl~~----~cl~~sv~~~p~~~~~vl~~l-ndqn~~~ae~a~r~ 135 (591)
T KOG2098|consen 74 ------TDPELE-------KLRLLHHLADQALTLPTDLVS----ICLAISVPDAPATQDGVLSLL-NDQNAQEAEEAKRG 135 (591)
T ss_pred ------cChHHH-------HHhhhhhhhhhhccCcHHhhh----hheEecCCCCccchhHHHHHh-hhhhhhhhhhhhhh
Confidence 000000 011 11224556777888777 999999999999999999999 99999999999999
Q ss_pred hccCCcchHHHHHHHHHHHHhhhcCCceeeeEEEecCeeeEEEEEeehhhHhhhcCCCCCCCCCCcCCCCCCCCCCCCCC
Q 009324 170 DLGGESGTVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPESVPVKPDLIEGGGATNQSQGQGE 249 (537)
Q Consensus 170 ~~~~~~g~~~av~~~L~~~a~~~~~~~v~~~e~~i~gk~~~~V~~id~~~L~~~l~~~~~~~~~~~~~~~~~n~~~~~~~ 249 (537)
.++++.+.|+++..++.++|.. +|.+..++ |+-.+|++.+++++..+++...|-.-.+ +.-.| .|. ++.
T Consensus 136 ~~~dd~~pil~~~~~~~~~a~k--~~s~~~~~----g~~~vm~l~t~p~~~~eqds~qv~e~~l-~lln~-~~~---sa~ 204 (591)
T KOG2098|consen 136 LLQDDAHPILVTYADHSKLAAK--MGSVAEKK----GPGEVMGLVTGPKRRAEQDSTQVAEFAL-SLLNG-LNS---SAS 204 (591)
T ss_pred hhcccccchhhhHHHHHHHHHh--ccchhhcc----CCcceeeeecCchhhhhHHHHHHHHHHH-HHHhc-cCc---ccc
Confidence 9999999999999999999999 89999988 9999999999999999976332210000 00011 111 111
Q ss_pred ccccCccCCCCCCCCcccccCCCCCCCCCcCCCCCCCCCCccccccCCcccCHHHHHHHhcCcchHHHHhhhhHHHHHHH
Q 009324 250 MEMYGFQRPHQDMWDPHVMYGGAAGGGGMMAPRGGRGMMNNRQQNLRTEEDDLIDIEEMLNKKTYKESQRSKAGEELLDL 329 (537)
Q Consensus 250 ~~~~~~~r~~~dm~d~~~~~~~~rg~~~m~~p~~~~~~~~~~~~~~~~~~~~~~die~LL~~~s~kek~~~k~~eEil~L 329 (537)
.-.||+.+=|..+++ ++ -..++|.||+++|++|++++|+++|+++|
T Consensus 205 ----------~p~~d~~~~~r~h~~-~~-----------------------v~~~ve~L~~qqst~e~~~~k~~~e~lel 250 (591)
T KOG2098|consen 205 ----------EPAKDPAKKFRKHAA-SD-----------------------VMLEVESLLNQQSTKEQQSKKVSQEILEL 250 (591)
T ss_pred ----------CCCCCchhccCCcch-hH-----------------------HHHHHHHHHcCccHHHHHHHhhhhHHHHh
Confidence 015777644444443 11 12599999999999999999999999999
Q ss_pred hcCccHHHHHHHHhhhccCCccccccCCCcCHHHHhhhcCCCccccccccccccCCCCCCCCCCCCcccccCCCCCccce
Q 009324 330 IQRPTAKETAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYI 409 (537)
Q Consensus 330 L~kPTAke~~~~~kFks~gGsqv~e~C~~~Tk~~C~~~~~~~~~C~KvHF~pII~phTD~sLGDCSYLdTC~hm~TCkYv 409 (537)
|+.+||+|.+.+++|++.+++||++||.++|+++|+.++....+|+|+||+|||++|||+||||||||||||||+|||||
T Consensus 251 ip~~ta~e~at~~~~k~~~~aqvi~~c~~~tke~c~~~s~~~~~c~KlHFrriI~~hTD~SLGDCSfLnTC~hm~TCkYV 330 (591)
T KOG2098|consen 251 IPTTTAKEQATVEKFKSRGRAQVIEFCDYGTKEECMKASDADRPCRKLHFRRIINKHTDESLGDCSFLNTCFHMDTCKYV 330 (591)
T ss_pred cCCCchhhhhhhhhhhhhhhhhhhhhhccccHhhhhccccccchhhhhHHHhhcccccccccccchhHhhhhhhccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCCccccCCCCCCCCCCCCCCCC--cccccccCCCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCC
Q 009324 410 HYELDPERDLPPALMGAGLPPQKPLKPQRPE--YCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGT 487 (537)
Q Consensus 410 HYe~d~~~~~~~~~~~~~~~~~~~l~~~r~~--~~s~~~l~PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~T 487 (537)
||++|..+.+....+ ....+...++..+.. |||...++|||||+||||+|||++||||.||||||||+|||+++|+|
T Consensus 331 HYe~d~~~~~~a~~~-~~t~~k~~l~~~rsv~~~ss~~~l~p~QWI~CDiR~~dm~iLGkFaVVmADPpWdIHMeLPYGT 409 (591)
T KOG2098|consen 331 HYEIDACMDSEAPGS-KDTTPKQELALTRSVGGDSSADRLFPPQWICCDIRYLDMSILGKFAVVMADPPWDIHMELPYGT 409 (591)
T ss_pred eeecccchhhhcCCC-CCCChhhhhcccccccccccccccCCcceEEeeceeeeeeeeceeEEEeeCCCccceeecCccc
Confidence 999975544322111 011223345566655 89988999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcEEEEEEec
Q 009324 488 MADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 488 MSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFry~t~Iv~ 536 (537)
|+++||+.|+|+.|||||++||||||++||+|+|||..|||+++..|+|
T Consensus 410 m~DdEmr~L~vp~LQddGlIFLWVTGRAmELGrecLnlWGY~rVdEiiW 458 (591)
T KOG2098|consen 410 MTDDEMRRLNVPVLQDDGLIFLWVTGRAMELGRECLNLWGYERVDEIIW 458 (591)
T ss_pred cchHHhhcCCCcccccCcEEEEEEcchHHHHHHHHHHhhchhhhheeEE
Confidence 9999999999999999999999999999999999999999999999999
No 2
>COG4725 IME4 Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]
Probab=99.89 E-value=3.6e-24 Score=201.11 Aligned_cols=88 Identities=30% Similarity=0.533 Sum_probs=85.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCC-CcEEEEecCCcchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQT-DGLIFLWVTGRAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~Lqd-dglLFLWVTnr~Le~grElL~aWGF 528 (537)
.|||.||+|+|||.++|||.|+++||.|..++++||++|+++||++|||++|+| +|++|||+|+++|+++.|||++|||
T Consensus 1 ~q~~~~~~r~~~~~v~~~~~~~i~~~~~~~~~~~pY~~m~~~EilaLPv~~L~d~g~~i~lw~T~~hl~~~~ecL~~WGf 80 (198)
T COG4725 1 AQWIRCDVRKFDFRVLGKFSVVIADMRALRKASAPYDVMSAEEILALPVGQLADMGCLIYLWATAPHLAFTVECLKAWGF 80 (198)
T ss_pred CceEEecceEEEEEEcCceEEEEcChhHhhhccCCCCccccHHHhcCchhHhhhCCcEEEEEecChHHHHHHHHHHHhCc
Confidence 489999999999999999999999999999999999999999999999999995 5799999999999999999999999
Q ss_pred EEEEEEecC
Q 009324 529 SIIIIIVHG 537 (537)
Q Consensus 529 ry~t~Iv~~ 537 (537)
+|++.+.|+
T Consensus 81 ~~ks~~~W~ 89 (198)
T COG4725 81 EYKSFMAWR 89 (198)
T ss_pred ceeEEEEEe
Confidence 999999996
No 3
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=99.85 E-value=6e-22 Score=181.01 Aligned_cols=69 Identities=38% Similarity=0.616 Sum_probs=66.1
Q ss_pred ccEEEECCCccccc-------cCCCCCCCHHHHhcCCccccC-CCcEEEEecCCcchHHH-HHHHhcCCcEEEEEEec
Q 009324 468 FGVIMADPPWDIHM-------ELPYGTMADDEMRNLNVPALQ-TDGLIFLWVTGRAMELG-REWYMFLVMSIIIIIVH 536 (537)
Q Consensus 468 FDVIlADPPWdi~m-------~l~Y~TMSddEIkaLPV~~Lq-ddglLFLWVTnr~Le~g-rElL~aWGFry~t~Iv~ 536 (537)
||||||||||.+++ ..+|+||+.++|++|||++|+ ++|+|||||||+.+..+ .++|++|||+|++.++|
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~~~~~~~~~l~~~WGf~~~~~~~W 78 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNSQLPEAKLELFPAWGFEYVTEWVW 78 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccchhhHHHHHHHHhCCCEEEEEEEE
Confidence 89999999999986 369999999999999999999 88999999999999999 99999999999999998
No 4
>KOG2097 consensus Predicted N6-adenine methylase involved in transcription regulation [Transcription]
Probab=99.56 E-value=1.7e-15 Score=153.40 Aligned_cols=90 Identities=23% Similarity=0.452 Sum_probs=81.7
Q ss_pred cCCCceeeccCCcCCCCCCC-CccEEEECCCccccc------cCCCCCCCHHHHhcCCccccC-CCcEEEEecC-CcchH
Q 009324 447 LGEPQWINCDIRNFRMDILG-QFGVIMADPPWDIHM------ELPYGTMADDEMRNLNVPALQ-TDGLIFLWVT-GRAME 517 (537)
Q Consensus 447 l~PpQwIncDVR~fD~siLG-KFDVIlADPPWdi~m------~l~Y~TMSddEIkaLPV~~Lq-ddglLFLWVT-nr~Le 517 (537)
.++|+|+++||..+|...|+ |||||+.+|||+.+. ...-..|++++|..|||++|+ ..+||||||. +..++
T Consensus 139 ataPmylk~di~si~~~~l~~kfdvil~~pp~eeyv~~~g~~t~n~~fw~~~di~nL~id~iaa~psFlFlW~gs~egl~ 218 (397)
T KOG2097|consen 139 ATAPMYLKADIDSIDPTLLGNKFDVILNEPPLEEYVRMAGCLTENMQFWTWDDIQNLPIDEIAAKPSFLFLWCGSGEGLD 218 (397)
T ss_pred cCCCceeecccceeehhhcccceeeeecCCcHHHHHHhccccccCceEecHHHhhcCchhhhccCCceEEEEecCchhHH
Confidence 57999999999999999887 999999999998763 233567999999999999999 7899999997 66789
Q ss_pred HHHHHHhcCCcEEEEEEec
Q 009324 518 LGREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 518 ~grElL~aWGFry~t~Iv~ 536 (537)
+++.||++|||++|.+|+|
T Consensus 219 lgrnclkkwgfRRcEdicw 237 (397)
T KOG2097|consen 219 LGRNCLKKWGFRRCEDICW 237 (397)
T ss_pred HHHHHHHHhcccchhceEE
Confidence 9999999999999999998
No 5
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=98.96 E-value=6.1e-10 Score=113.49 Aligned_cols=87 Identities=15% Similarity=0.281 Sum_probs=73.6
Q ss_pred CceeeccCCcCCCCCCC---CccEEEECCCccccc---cCCCCCCCHH-HHhcCCccccC-CCcEEEEecCCcchH---H
Q 009324 450 PQWINCDIRNFRMDILG---QFGVIMADPPWDIHM---ELPYGTMADD-EMRNLNVPALQ-TDGLIFLWVTGRAME---L 518 (537)
Q Consensus 450 pQwIncDVR~fD~siLG---KFDVIlADPPWdi~m---~l~Y~TMSdd-EIkaLPV~~Lq-ddglLFLWVTnr~Le---~ 518 (537)
..|+..||..++--..+ ++|+|++||||.++. +..|...+.. ++.+|||.++. +.|++..||||+... +
T Consensus 164 SsF~~gDv~~~~qll~~H~llpdlIIiDPPW~NKSVkRs~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~WcTNrqkhi~f~ 243 (366)
T KOG2356|consen 164 SSFHVGDVKDIEQLLRAHDLLPDLIIIDPPWFNKSVKRSRTYSMLSNLLQLLDIPIIKLHDPLCLVAFWCTNRQKHIEFE 243 (366)
T ss_pred cceecccHHHHHHHhHHHhhcCCeEEeCCCCCCcccccccceecccchhhhhcCCchhhcCCCceEEEEEcCcHHHHHHH
Confidence 37999999988743333 789999999999985 6789999988 99999999998 889999999999653 4
Q ss_pred HHHHHhcCCcEEEEEEec
Q 009324 519 GREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 519 grElL~aWGFry~t~Iv~ 536 (537)
-.+++.+||.+.+.-..|
T Consensus 244 k~eLf~kWnl~lv~tw~w 261 (366)
T KOG2356|consen 244 KIELFDKWNLELVATWKW 261 (366)
T ss_pred HHHHHHhhccceEEEEEE
Confidence 567999999999876655
No 6
>PRK11524 putative methyltransferase; Provisional
Probab=94.63 E-value=0.05 Score=53.98 Aligned_cols=87 Identities=18% Similarity=0.196 Sum_probs=54.6
Q ss_pred CCceeeccCCcCCCC-CCCCccEEEECCCcccccc--CCCCCCCH-------HHHhcCCccccCCCcEEEEecCCcchHH
Q 009324 449 EPQWINCDIRNFRMD-ILGQFGVIMADPPWDIHME--LPYGTMAD-------DEMRNLNVPALQTDGLIFLWVTGRAMEL 518 (537)
Q Consensus 449 PpQwIncDVR~fD~s-iLGKFDVIlADPPWdi~m~--l~Y~TMSd-------dEIkaLPV~~LqddglLFLWVTnr~Le~ 518 (537)
.-+.++.|...+-=. .-+.||+|++|||+..... ...+.+.. ++....-..-|.++|.+|+++....+..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~~ 87 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMPF 87 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhhH
Confidence 346788888764211 2368999999999965211 11112221 2233333334558999999987766653
Q ss_pred HHHHHhcCCcEEEEEEec
Q 009324 519 GREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 519 grElL~aWGFry~t~Iv~ 536 (537)
..++..-||.+...|||
T Consensus 88 -~~~~~~~~f~~~~~iiW 104 (284)
T PRK11524 88 -IDLYCRKLFTIKSRIVW 104 (284)
T ss_pred -HHHHHhcCcceEEEEEE
Confidence 44555669999999999
No 7
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.99 E-value=0.0087 Score=49.63 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=37.2
Q ss_pred CCceeeccCCcCC-CCCCCCccEEEECCCccccc--cCCCCCCCHHHHhcCCccccCCCcEEEEecC
Q 009324 449 EPQWINCDIRNFR-MDILGQFGVIMADPPWDIHM--ELPYGTMADDEMRNLNVPALQTDGLIFLWVT 512 (537)
Q Consensus 449 PpQwIncDVR~fD-~siLGKFDVIlADPPWdi~m--~l~Y~TMSddEIkaLPV~~LqddglLFLWVT 512 (537)
..+|++.|++.+. ....++||+|+.||||-... ...+.. ...++..-=...|.++|.+++|+.
T Consensus 51 ~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~-~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 51 RVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRR-LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGC-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHH-HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4789999998887 33458999999999997542 111222 223333222344558888888764
No 8
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.18 E-value=0.037 Score=49.94 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=41.5
Q ss_pred cEEEECCCcccccc-----CCCCCCCHHHHhcC-------CccccCCCcEEEEecCCcchH--HHHHHHhcCC-cEEEEE
Q 009324 469 GVIMADPPWDIHME-----LPYGTMADDEMRNL-------NVPALQTDGLIFLWVTGRAME--LGREWYMFLV-MSIIII 533 (537)
Q Consensus 469 DVIlADPPWdi~m~-----l~Y~TMSddEIkaL-------PV~~LqddglLFLWVTnr~Le--~grElL~aWG-Fry~t~ 533 (537)
|+|+.|||...... .-...++.++-.+. =..-|.++|.+|+++....+. ....+++..| |.+...
T Consensus 2 dliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (231)
T PF01555_consen 2 DLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNE 81 (231)
T ss_dssp EEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEE
T ss_pred CEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheecc
Confidence 79999999977643 22234444443332 122244899999999988876 4445566667 999999
Q ss_pred Eec
Q 009324 534 IVH 536 (537)
Q Consensus 534 Iv~ 536 (537)
|||
T Consensus 82 iiW 84 (231)
T PF01555_consen 82 IIW 84 (231)
T ss_dssp EEE
T ss_pred cee
Confidence 999
No 9
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.10 E-value=0.16 Score=47.48 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=52.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCC--------C----------CCC-HHHHhcCCccccCCCcEEEEe
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPY--------G----------TMA-DDEMRNLNVPALQTDGLIFLW 510 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y--------~----------TMS-ddEIkaLPV~~LqddglLFLW 510 (537)
..|+++|+... + ..++||+|++||||......+. . .+. ...+..--..-|.++|.++++
T Consensus 139 ~~~~~~d~~~~-~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 139 VTFLQSDWFEP-L-PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred EEEEECchhcc-C-cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 57888888652 2 3479999999999864321111 0 000 011222222335689999999
Q ss_pred cCCcchHHHHHHHhcCCcEEEEE
Q 009324 511 VTGRAMELGREWYMFLVMSIIII 533 (537)
Q Consensus 511 VTnr~Le~grElL~aWGFry~t~ 533 (537)
......+.-.+.|++-||+.+..
T Consensus 217 ~~~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 217 IGYDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred ECccHHHHHHHHHHhCCCCceEE
Confidence 88777778888999999987654
No 10
>PRK13699 putative methylase; Provisional
Probab=91.44 E-value=0.46 Score=46.41 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCccEEEECCCccccccCC-CCCCCH---HHHhcCCc----cccCCCcEEEEecCCcchHHHHHHHhcCCcEEEEEEec
Q 009324 466 GQFGVIMADPPWDIHMELP-YGTMAD---DEMRNLNV----PALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 466 GKFDVIlADPPWdi~m~l~-Y~TMSd---dEIkaLPV----~~LqddglLFLWVTnr~Le~grElL~aWGFry~t~Iv~ 536 (537)
+.+|+|+.|||+.+..... ..++.. .+...-=+ .-|.++|.+++|+....+..-...+++=||.+...|||
T Consensus 19 ~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW 97 (227)
T PRK13699 19 NAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVF 97 (227)
T ss_pred cccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEE
Confidence 5899999999997532111 011111 11110001 12347899999887766655566777889999999999
No 11
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.20 E-value=0.19 Score=47.53 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCccEEEECCCccccccCCCCCCCHHHH--hcCCccccCCCcEEEEecCCcchH-HHHHHHhcCCcEEEE
Q 009324 466 GQFGVIMADPPWDIHMELPYGTMADDEM--RNLNVPALQTDGLIFLWVTGRAME-LGREWYMFLVMSIII 532 (537)
Q Consensus 466 GKFDVIlADPPWdi~m~l~Y~TMSddEI--kaLPV~~LqddglLFLWVTnr~Le-~grElL~aWGFry~t 532 (537)
++||+|++|||+-. .+=+ -+.=|..|..++.=.+|+|+..++ .+.++| |++.++
T Consensus 85 ~~~d~vv~DPPFl~----------~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll---~~~~~~ 141 (162)
T PF10237_consen 85 GKFDVVVIDPPFLS----------EECLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL---GLRMCD 141 (162)
T ss_pred CCceEEEECCCCCC----------HHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh---CeeEEe
Confidence 79999999999922 1111 122344455446667899998886 566777 776654
No 12
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=89.81 E-value=0.39 Score=48.57 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=47.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCC-C-HHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTM-A-DDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLV 527 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TM-S-ddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWG 527 (537)
..++++|.+.+.+. .++||+|++|||+-.......... . ..++.+-=...|.++|.+.+|++... ...++++.-|
T Consensus 232 i~~~~~D~~~l~~~-~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g 308 (329)
T TIGR01177 232 FFVKRGDATKLPLS-SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAF 308 (329)
T ss_pred CeEEecchhcCCcc-cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcC
Confidence 56889999887664 468999999999876532221100 0 12222221233558999999987653 2235677777
Q ss_pred c
Q 009324 528 M 528 (537)
Q Consensus 528 F 528 (537)
|
T Consensus 309 ~ 309 (329)
T TIGR01177 309 R 309 (329)
T ss_pred c
Confidence 7
No 13
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.70 E-value=0.83 Score=43.78 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=48.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCC--------CCCC-C----------HHHHhcCCccccCCCcEEEE
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELP--------YGTM-A----------DDEMRNLNVPALQTDGLIFL 509 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~--------Y~TM-S----------ddEIkaLPV~~LqddglLFL 509 (537)
...++++|+.. ....++||+|+++||+--....+ |... . ...|..--..-|.++|.+++
T Consensus 159 ~i~~~~~d~~~--~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 159 RVEFLQGDWFE--PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cEEEEEccccC--cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 35777888732 11236999999999985321100 1100 0 01111111123458899998
Q ss_pred ecCCcchHHHHHHHhcCCcEEEE
Q 009324 510 WVTGRAMELGREWYMFLVMSIII 532 (537)
Q Consensus 510 WVTnr~Le~grElL~aWGFry~t 532 (537)
-+....-+.-.++|+.+||.-+.
T Consensus 237 e~g~~~~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 237 EIGYDQGEAVRALLAAAGFADVE 259 (275)
T ss_pred EECchHHHHHHHHHHhCCCceeE
Confidence 77666667778899999997443
No 14
>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]
Probab=88.96 E-value=0.1 Score=57.06 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=54.6
Q ss_pred HHHHHhcCcchHHHH-hhhhHHHHHHHhc--CccHHH--HHHHHhhhccCCccccccCCCcCHHHHhhhcCCC
Q 009324 304 DIEEMLNKKTYKESQ-RSKAGEELLDLIQ--RPTAKE--TAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSF 371 (537)
Q Consensus 304 die~LL~~~s~kek~-~~k~~eEil~LL~--kPTAke--~~~~~kFks~gGsqv~e~C~~~Tk~~C~~~~~~~ 371 (537)
+|+.|+.+|+.+++| ++++.+++++|++ ++||+| ...+.+||..++++++ +..+|-+...++
T Consensus 169 ~vm~l~t~p~~~~eqds~qv~e~~l~lln~~~~sa~~p~~d~~~~~r~h~~~~v~------~~ve~L~~qqst 235 (591)
T KOG2098|consen 169 EVMGLVTGPKRRAEQDSTQVAEFALSLLNGLNSSASEPAKDPAKKFRKHAASDVM------LEVESLLNQQST 235 (591)
T ss_pred ceeeeecCchhhhhHHHHHHHHHHHHHHhccCccccCCCCCchhccCCcchhHHH------HHHHHHHcCccH
Confidence 899999999999999 8999999999999 999999 8899999999988887 677776554443
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=85.74 E-value=1.5 Score=41.13 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=47.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhc---C
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMF---L 526 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~a---W 526 (537)
-.++++|+..+ ...++||+|+++. |.. .+++.+.=-.-|.++|.+++|..........++.+. |
T Consensus 94 i~~i~~d~~~~--~~~~~fD~I~s~~-~~~----------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~ 160 (181)
T TIGR00138 94 VEIVNGRAEDF--QHEEQFDVITSRA-LAS----------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVL 160 (181)
T ss_pred eEEEecchhhc--cccCCccEEEehh-hhC----------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhc
Confidence 57899999875 3357999999985 211 122221112336699999999877777776666666 9
Q ss_pred CcEEEE
Q 009324 527 VMSIII 532 (537)
Q Consensus 527 GFry~t 532 (537)
||+.+.
T Consensus 161 ~~~~~~ 166 (181)
T TIGR00138 161 GVEPLE 166 (181)
T ss_pred CceEee
Confidence 999764
No 16
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=85.31 E-value=1.5 Score=45.66 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVM 528 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGF 528 (537)
-..|+++|+..+.....++||+|++|||+. -+..+-|..| ..+.+++++|+=|-...+..=...| =||
T Consensus 282 ~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~--------G~~~~~l~~l--~~~~p~~ivyvsc~p~TlaRDl~~L--~gy 349 (374)
T TIGR02085 282 NLSFAALDSAKFATAQMSAPELVLVNPPRR--------GIGKELCDYL--SQMAPKFILYSSCNAQTMAKDIAEL--SGY 349 (374)
T ss_pred cEEEEECCHHHHHHhcCCCCCEEEECCCCC--------CCcHHHHHHH--HhcCCCeEEEEEeCHHHHHHHHHHh--cCc
Confidence 357899999876543336799999999963 1223333333 1356889888887654443333344 489
Q ss_pred EEEEEE
Q 009324 529 SIIIII 534 (537)
Q Consensus 529 ry~t~I 534 (537)
++....
T Consensus 350 ~l~~~~ 355 (374)
T TIGR02085 350 QIERVQ 355 (374)
T ss_pred eEEEEE
Confidence 887654
No 17
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=85.22 E-value=1.1 Score=44.06 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=48.5
Q ss_pred ceeeccCCcCCCC-CCCCccEEEECCCccccccC--------CC-CCCCH----------HHHhcCCccccCCCcEEEEe
Q 009324 451 QWINCDIRNFRMD-ILGQFGVIMADPPWDIHMEL--------PY-GTMAD----------DEMRNLNVPALQTDGLIFLW 510 (537)
Q Consensus 451 QwIncDVR~fD~s-iLGKFDVIlADPPWdi~m~l--------~Y-~TMSd----------dEIkaLPV~~LqddglLFLW 510 (537)
.++++|+..+--. ..++||+|++||||.-.... .| +.+.+ .+|..-=-.-|.++|.+++=
T Consensus 136 ~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 136 TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6888888643211 23689999999999532110 11 11111 12322212234588988876
Q ss_pred cCCcchHHHHHHHhcCCcEEE
Q 009324 511 VTGRAMELGREWYMFLVMSII 531 (537)
Q Consensus 511 VTnr~Le~grElL~aWGFry~ 531 (537)
......+...++|++-||+..
T Consensus 216 ~~~~~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 216 TSERQAPLAVEAFARAGLIAR 236 (251)
T ss_pred ECcchHHHHHHHHHHCCCCce
Confidence 666667778889998888654
No 18
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=83.30 E-value=3.1 Score=37.99 Aligned_cols=81 Identities=15% Similarity=0.062 Sum_probs=48.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc----CCCCCCC----------HHHHhcCCccccCCCcEE-EEecCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME----LPYGTMA----------DDEMRNLNVPALQTDGLI-FLWVTGR 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~----l~Y~TMS----------ddEIkaLPV~~LqddglL-FLWVTnr 514 (537)
..++++|+..+. .++||+|+++|||..... .++.... .+++..-=..-|.++|.+ +...+..
T Consensus 68 ~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 68 LDVVMTDLFKGV---RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred eEEEEccccccc---CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 577888875532 469999999999953211 1111100 122222111234477755 4454555
Q ss_pred chHHHHHHHhcCCcEEEEE
Q 009324 515 AMELGREWYMFLVMSIIII 533 (537)
Q Consensus 515 ~Le~grElL~aWGFry~t~ 533 (537)
.....+++|+.=||.+..+
T Consensus 145 ~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred ChHHHHHHHHhCCCeEEEE
Confidence 5788899999999987653
No 19
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=82.42 E-value=2.3 Score=42.90 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=47.8
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVM 528 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGF 528 (537)
...|++.|+..+.....++||+|++|||..- +..+-+.. +..+.++.++|+=|-...+..-.+.|. ||
T Consensus 222 ~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G--------~~~~~~~~--l~~~~~~~ivyvsc~p~t~~rd~~~l~--~y 289 (315)
T PRK03522 222 NVQFQALDSTQFATAQGEVPDLVLVNPPRRG--------IGKELCDY--LSQMAPRFILYSSCNAQTMAKDLAHLP--GY 289 (315)
T ss_pred ceEEEEcCHHHHHHhcCCCCeEEEECCCCCC--------ccHHHHHH--HHHcCCCeEEEEECCcccchhHHhhcc--Cc
Confidence 3678999998776444468999999999431 22221222 233446788888777666665555563 88
Q ss_pred EEEEEE
Q 009324 529 SIIIII 534 (537)
Q Consensus 529 ry~t~I 534 (537)
+.....
T Consensus 290 ~~~~~~ 295 (315)
T PRK03522 290 RIERVQ 295 (315)
T ss_pred EEEEEE
Confidence 887654
No 20
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=77.27 E-value=0.42 Score=43.73 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=37.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLV 527 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWG 527 (537)
.+++.+|+.. .-..++||+|+++||+..... .+....+++..---.-|.++|.+|+ |.++.+.....+-+.+|
T Consensus 83 v~~~~~d~~~--~~~~~~fD~Iv~NPP~~~~~~--~~~~~~~~~i~~a~~~Lk~~G~l~l-v~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 83 VEVVQSDLFE--ALPDGKFDLIVSNPPFHAGGD--DGLDLLRDFIEQARRYLKPGGRLFL-VINSHLGYERLLKELFG 155 (170)
T ss_dssp EEEEESSTTT--TCCTTCEEEEEE---SBTTSH--CHHHHHHHHHHHHHHHEEEEEEEEE-EEETTSCHHHHHHHHHS
T ss_pred cccccccccc--cccccceeEEEEccchhcccc--cchhhHHHHHHHHHHhccCCCEEEE-EeecCCChHHHHHHhcC
Confidence 6778888743 222579999999999654321 1112234443333334558898866 44444433222444444
No 21
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=77.19 E-value=2 Score=48.38 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=51.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCC----CCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYG----TMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMF 525 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~----TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~a 525 (537)
..|+++|+..+--...++||+|++|||--........ .-...++...-...|.++|++++-+....+....+.+..
T Consensus 591 v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~ 670 (702)
T PRK11783 591 HRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAK 670 (702)
T ss_pred eEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHh
Confidence 5789999854310113589999999997543211000 111233444334456689998887766767766778877
Q ss_pred CCcEEEEE
Q 009324 526 LVMSIIII 533 (537)
Q Consensus 526 WGFry~t~ 533 (537)
=||++...
T Consensus 671 ~g~~~~~i 678 (702)
T PRK11783 671 LGLKAEEI 678 (702)
T ss_pred CCCeEEEE
Confidence 78877644
No 22
>PHA03411 putative methyltransferase; Provisional
Probab=76.46 E-value=6.6 Score=40.64 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=48.9
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCcccccc------CCC-------CCCCHHHHhcCCccccC-CCc-EEEEecCC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHME------LPY-------GTMADDEMRNLNVPALQ-TDG-LIFLWVTG 513 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~------l~Y-------~TMSddEIkaLPV~~Lq-ddg-lLFLWVTn 513 (537)
...|+++|++.+.. .++||+|+++|||-.... ..| ..++.++..+ ++..+- +.| ++|++-..
T Consensus 110 ~v~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~-~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 110 EAEWITSDVFEFES--NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA-DVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred CCEEEECchhhhcc--cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHh-hhHheecCCceEEEEEecc
Confidence 36799999997753 368999999999975321 223 3333333322 333333 554 44555443
Q ss_pred cch------HHHHHHHhcCCcEEE
Q 009324 514 RAM------ELGREWYMFLVMSII 531 (537)
Q Consensus 514 r~L------e~grElL~aWGFry~ 531 (537)
+.. .+-+.+|+.-||...
T Consensus 187 ~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 187 PYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred ccccccCCHHHHHHHHHhcCcEec
Confidence 332 356689999999764
No 23
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=75.70 E-value=1.6 Score=42.07 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=30.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccc-cCCCcEEEEec
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPA-LQTDGLIFLWV 511 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~-LqddglLFLWV 511 (537)
..++++|+..+-....++||+|++|||+... +..+-+..|--.. |.+++++++=+
T Consensus 104 v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g-------~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 104 ARVVNTNALSFLAQPGTPHNVVFVDPPFRKG-------LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred EEEEEchHHHHHhhcCCCceEEEECCCCCCC-------hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 5677888754311122479999999997532 2222333332222 34677776554
No 24
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=75.35 E-value=7.4 Score=39.09 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=45.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccC-------CC-CCCC----------HHHHhcCCccccCCCcEEEEec
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMEL-------PY-GTMA----------DDEMRNLNVPALQTDGLIFLWV 511 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l-------~Y-~TMS----------ddEIkaLPV~~LqddglLFLWV 511 (537)
-.|+++|+... + ..++||+|++|||+--.... +| +.+. ...|.+--..-|.++|.+++-+
T Consensus 174 i~~~~~D~~~~-~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 174 VTLIQSDLFAA-L-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred EEEEECchhhc-c-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 46888887432 1 23489999999998543210 11 1110 0122222223355899999988
Q ss_pred CCcchHHHHHHHhcCCcEE
Q 009324 512 TGRAMELGREWYMFLVMSI 530 (537)
Q Consensus 512 Tnr~Le~grElL~aWGFry 530 (537)
.... +..++++..=||..
T Consensus 252 g~~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 252 GNSM-EALEEAYPDVPFTW 269 (284)
T ss_pred CcCH-HHHHHHHHhCCCce
Confidence 8754 67788888766654
No 25
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=74.55 E-value=1.1 Score=42.69 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=15.2
Q ss_pred CceeeccCCcCCCCCC-C-CccEEEECCCcc
Q 009324 450 PQWINCDIRNFRMDIL-G-QFGVIMADPPWD 478 (537)
Q Consensus 450 pQwIncDVR~fD~siL-G-KFDVIlADPPWd 478 (537)
-.||++|...+--... . .||+|.+||||-
T Consensus 50 I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 50 IDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 4789999877532211 1 289999999994
No 26
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=73.36 E-value=2.7 Score=31.63 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=36.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEe
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLW 510 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLW 510 (537)
+.+|+.+|+..+.....++||+|+++++.... .-....+.+-=...+.++|.++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 48 NVEVLKGDAEELPPEADESFDVIISDPPLHHL------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceEEEEcChhhhccccCCceEEEEEccceeeh------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 57888999988776456899999999997652 111122211112234578888876
No 27
>PRK14967 putative methyltransferase; Provisional
Probab=72.40 E-value=8 Score=36.83 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=46.6
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccC---CCC-----------CCCHHHHhcCCccccCCCcEEEEec-CCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMEL---PYG-----------TMADDEMRNLNVPALQTDGLIFLWV-TGR 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l---~Y~-----------TMSddEIkaLPV~~LqddglLFLWV-Tnr 514 (537)
..+++.|+..+ ...++||+|++|||+...... .+. ....+.+.+-=..-|.++|.+++=. +..
T Consensus 86 ~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~ 163 (223)
T PRK14967 86 VDVRRGDWARA--VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS 163 (223)
T ss_pred eEEEECchhhh--ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 45777777542 223689999999998644211 010 0011222221122345778765432 333
Q ss_pred chHHHHHHHhcCCcEEEEEE
Q 009324 515 AMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 515 ~Le~grElL~aWGFry~t~I 534 (537)
......+.++.=||.+...+
T Consensus 164 ~~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 164 GVERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred CHHHHHHHHHHCCCCeEEEE
Confidence 56788888888788766544
No 28
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=72.19 E-value=2.5 Score=43.00 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=35.9
Q ss_pred CCceeeccCCc-CCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccC-CCcEEEEecCCcc--hHH---HHH
Q 009324 449 EPQWINCDIRN-FRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQ-TDGLIFLWVTGRA--MEL---GRE 521 (537)
Q Consensus 449 PpQwIncDVR~-fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~Lq-ddglLFLWVTnr~--Le~---grE 521 (537)
+-.-+.+|+|. |+-...|+||+++.||||...- ..=..+--|..|. +.|..|+=.+... ... -.+
T Consensus 93 ~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G--------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~ 164 (243)
T PF01861_consen 93 PIEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEG--------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQR 164 (243)
T ss_dssp -EEEE---TTS---TTTSS-BSEEEE---SSHHH--------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHH
T ss_pred ceEEEEecccccCCHHHhcCCCEEEeCCCCCHHH--------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHH
Confidence 45567788885 4455679999999999998741 1111222344555 4456666666543 332 234
Q ss_pred HHhcCCcEEEEEE
Q 009324 522 WYMFLVMSIIIII 534 (537)
Q Consensus 522 lL~aWGFry~t~I 534 (537)
.+-.-||-+.++|
T Consensus 165 ~l~~~gl~i~dii 177 (243)
T PF01861_consen 165 FLLEMGLVITDII 177 (243)
T ss_dssp HHHTS--EEEEEE
T ss_pred HHHHCCcCHHHHH
Confidence 5568899665544
No 29
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=71.91 E-value=2.2 Score=40.09 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=36.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcC------CccccCCCcEEEEecCCcchHHHHHHH
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNL------NVPALQTDGLIFLWVTGRAMELGREWY 523 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaL------PV~~LqddglLFLWVTnr~Le~grElL 523 (537)
-.++++|.+.+. ..-+.||+|+.||||-...... .++..| -+.++-....+|+=..+..++...+..
T Consensus 90 i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~------~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~~~~~ 162 (179)
T PF01170_consen 90 IDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGSK------KDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKALGLK 162 (179)
T ss_dssp EEEEE--GGGGG-GTTSBSCEEEEE--STTSHCHH------HHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHHHTST
T ss_pred eEEEecchhhcc-cccCCCCEEEECcchhhhccCH------HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHhcch
Confidence 478899999888 2336899999999998753211 111111 011212336666666677776554433
No 30
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=71.80 E-value=9.4 Score=40.04 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=47.3
Q ss_pred CceeeccCCcCC--CCC-CCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcC
Q 009324 450 PQWINCDIRNFR--MDI-LGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFL 526 (537)
Q Consensus 450 pQwIncDVR~fD--~si-LGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aW 526 (537)
..|++.|+..+- +.. .++||+|++|||..- +..+-+.. +.++.+++++|+=|....+..-.+.|...
T Consensus 342 v~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G--------~~~~~l~~--l~~l~~~~ivyvsc~p~tlard~~~l~~~ 411 (431)
T TIGR00479 342 VEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKG--------CAAEVLRT--IIELKPERIVYVSCNPATLARDLEFLCKE 411 (431)
T ss_pred eEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCC--------CCHHHHHH--HHhcCCCEEEEEcCCHHHHHHHHHHHHHC
Confidence 567888876531 111 247999999999531 22222222 22456778887766555555566678889
Q ss_pred CcEEEEEEe
Q 009324 527 VMSIIIIIV 535 (537)
Q Consensus 527 GFry~t~Iv 535 (537)
||+......
T Consensus 412 gy~~~~~~~ 420 (431)
T TIGR00479 412 GYGITWVQP 420 (431)
T ss_pred CeeEEEEEE
Confidence 998876543
No 31
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=70.97 E-value=5.3 Score=40.61 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=58.6
Q ss_pred CceeeccCCcCCCCCC-CCccEEEECCCccccc-----------cCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchH
Q 009324 450 PQWINCDIRNFRMDIL-GQFGVIMADPPWDIHM-----------ELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAME 517 (537)
Q Consensus 450 pQwIncDVR~fD~siL-GKFDVIlADPPWdi~m-----------~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le 517 (537)
-+.++.||..|--... .+||+|++.||+--.. ..|-.+.+.+++.+--=.-|-++|.+++=--...+.
T Consensus 97 i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ 176 (248)
T COG4123 97 IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLA 176 (248)
T ss_pred eeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHH
Confidence 5789999998875544 4799999999995432 123357788888776545556888887766655566
Q ss_pred HHHHHHhcCCcEEE
Q 009324 518 LGREWYMFLVMSII 531 (537)
Q Consensus 518 ~grElL~aWGFry~ 531 (537)
+-.++|++.+|..+
T Consensus 177 ei~~~l~~~~~~~k 190 (248)
T COG4123 177 EIIELLKSYNLEPK 190 (248)
T ss_pred HHHHHHHhcCCCce
Confidence 77788888776655
No 32
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=69.85 E-value=10 Score=41.30 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=49.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc-------CCC-CCCCH-------HHHhcC---CccccCCCcEEEEec
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME-------LPY-GTMAD-------DEMRNL---NVPALQTDGLIFLWV 511 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~-------l~Y-~TMSd-------dEIkaL---PV~~LqddglLFLWV 511 (537)
-.++++|+...++...++||+|+++||+--... ..| +.+.+ +-++++ =-.-|.++|++++=.
T Consensus 302 V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 302 VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 478899987655544468999999999743211 111 00111 111111 012355889887666
Q ss_pred CCcchHHHHHHHhcCCcEEEE
Q 009324 512 TGRAMELGREWYMFLVMSIII 532 (537)
Q Consensus 512 Tnr~Le~grElL~aWGFry~t 532 (537)
.....+...++++.=||..+.
T Consensus 382 G~~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 382 GFDQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred CccHHHHHHHHHHHCCCcEEE
Confidence 666677788888887886544
No 33
>PRK14968 putative methyltransferase; Provisional
Probab=69.58 E-value=12 Score=33.33 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=47.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccc-----------cCCCCCCCHHHHhcC---CccccCCCcEEEEecCCc-
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHM-----------ELPYGTMADDEMRNL---NVPALQTDGLIFLWVTGR- 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m-----------~l~Y~TMSddEIkaL---PV~~LqddglLFLWVTnr- 514 (537)
..|+.+|+... + .-++||+|+++||+.... ..+.+....+.+..+ =..-|.++|.+++.+...
T Consensus 75 ~~~~~~d~~~~-~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~ 152 (188)
T PRK14968 75 VEVIRSDLFEP-F-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT 152 (188)
T ss_pred eEEEecccccc-c-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC
Confidence 56888887542 1 223899999999974321 111111111221111 122344789888877654
Q ss_pred chHHHHHHHhcCCcEEEE
Q 009324 515 AMELGREWYMFLVMSIII 532 (537)
Q Consensus 515 ~Le~grElL~aWGFry~t 532 (537)
..+...++|..-||+...
T Consensus 153 ~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 153 GEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CHHHHHHHHHHCCCeeee
Confidence 356778899988997653
No 34
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=67.31 E-value=3.7 Score=40.82 Aligned_cols=71 Identities=21% Similarity=0.484 Sum_probs=47.2
Q ss_pred CCCCCCCCcccccCCCCCccceeeeecCCCCCCccccCCCCCCCCCCCCCCCCcccccccCCCceeeccCCcCCCCCCCC
Q 009324 388 DISLGDCSFLDTCRHMKTCKYIHYELDPERDLPPALMGAGLPPQKPLKPQRPEYCSEVELGEPQWINCDIRNFRMDILGQ 467 (537)
Q Consensus 388 D~sLGDCSYLdTC~hm~TCkYvHYe~d~~~~~~~~~~~~~~~~~~~l~~~r~~~~s~~~l~PpQwIncDVR~fD~siLGK 467 (537)
|..-|.|++-=+|.-+..|+-+=+++|+.- -.... .+|++ -++--.|+.|||+.|+ ++
T Consensus 51 DlG~GTG~La~ga~~lGa~~V~~vdiD~~a--~ei~r---------------~N~~~-l~g~v~f~~~dv~~~~----~~ 108 (198)
T COG2263 51 DLGAGTGILAIGAALLGASRVLAVDIDPEA--LEIAR---------------ANAEE-LLGDVEFVVADVSDFR----GK 108 (198)
T ss_pred EcCCCcCHHHHHHHhcCCcEEEEEecCHHH--HHHHH---------------HHHHh-hCCceEEEEcchhhcC----Cc
Confidence 555566777777777778888777776431 10000 11222 2345789999999776 68
Q ss_pred ccEEEECCCcccc
Q 009324 468 FGVIMADPPWDIH 480 (537)
Q Consensus 468 FDVIlADPPWdi~ 480 (537)
||+++++|||-..
T Consensus 109 ~dtvimNPPFG~~ 121 (198)
T COG2263 109 FDTVIMNPPFGSQ 121 (198)
T ss_pred cceEEECCCCccc
Confidence 8999999999664
No 35
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=66.63 E-value=3.1 Score=39.56 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=18.6
Q ss_pred CceeeccCCcCCCC---CCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMD---ILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~s---iLGKFDVIlADPPWdi~ 480 (537)
.+.+++|+..+=.. ...+||+|++|||+...
T Consensus 94 ~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~ 127 (183)
T PF03602_consen 94 IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKG 127 (183)
T ss_dssp EEEEESSHHHHHHHHHHCTS-EEEEEE--STTSC
T ss_pred eeeeccCHHHHHHhhcccCCCceEEEECCCcccc
Confidence 56677775433211 24699999999999874
No 36
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=65.94 E-value=14 Score=36.69 Aligned_cols=80 Identities=10% Similarity=0.180 Sum_probs=45.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc-------CCCCC-C----------CHHHHhcCCccccCCCcEEEEec
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME-------LPYGT-M----------ADDEMRNLNVPALQTDGLIFLWV 511 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~-------l~Y~T-M----------SddEIkaLPV~~LqddglLFLWV 511 (537)
..|++.|+-.. + ...+||+|++|||+--... ..|.. . -...|.+--..-|.++|++++=+
T Consensus 167 v~~~~~d~~~~-~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 167 VEFIQSNLFEP-L-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred EEEEECchhcc-C-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 56788887431 1 1138999999999964321 11110 0 01112221112345889888777
Q ss_pred CCcchHHHHHHHh-cCCcEEE
Q 009324 512 TGRAMELGREWYM-FLVMSII 531 (537)
Q Consensus 512 Tnr~Le~grElL~-aWGFry~ 531 (537)
.+..-+...+++. .-||..+
T Consensus 245 g~~q~~~~~~~~~~~~~~~~~ 265 (284)
T TIGR00536 245 GNWQQKSLKELLRIKFTWYDV 265 (284)
T ss_pred CccHHHHHHHHHHhcCCCcee
Confidence 7777777778887 4566543
No 37
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=65.28 E-value=9 Score=40.65 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCceeeccCCcCCCC--C-CCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhc
Q 009324 449 EPQWINCDIRNFRMD--I-LGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMF 525 (537)
Q Consensus 449 PpQwIncDVR~fD~s--i-LGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~a 525 (537)
...|+++|+..+--. . .++||+|++|||+.- + .+.+..| ..+.+++++|+=|....+..=...|..
T Consensus 346 ~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g--------~-~~~~~~l--~~~~~~~ivyvSCnp~tlaRDl~~L~~ 414 (443)
T PRK13168 346 NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG--------A-AEVMQAL--AKLGPKRIVYVSCNPATLARDAGVLVE 414 (443)
T ss_pred ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC--------h-HHHHHHH--HhcCCCeEEEEEeChHHhhccHHHHhh
Confidence 367899998754211 1 257999999999863 2 1233222 335678888888855555444446655
Q ss_pred CCcEEEEEE
Q 009324 526 LVMSIIIII 534 (537)
Q Consensus 526 WGFry~t~I 534 (537)
=||+...+.
T Consensus 415 ~gY~l~~i~ 423 (443)
T PRK13168 415 AGYRLKRAG 423 (443)
T ss_pred CCcEEEEEE
Confidence 699988765
No 38
>PRK00811 spermidine synthase; Provisional
Probab=65.18 E-value=3.9 Score=41.03 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=38.8
Q ss_pred ceeeccCCcCCCCCCCCccEEEEC--CCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch
Q 009324 451 QWINCDIRNFRMDILGQFGVIMAD--PPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM 516 (537)
Q Consensus 451 QwIncDVR~fD~siLGKFDVIlAD--PPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L 516 (537)
..+..|.+.|--..-++||+|++| +||... . .+-..|+.+.--..|.++|++.+|+..+..
T Consensus 134 ~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~----~-~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~ 196 (283)
T PRK00811 134 ELVIGDGIKFVAETENSFDVIIVDSTDPVGPA----E-GLFTKEFYENCKRALKEDGIFVAQSGSPFY 196 (283)
T ss_pred EEEECchHHHHhhCCCcccEEEECCCCCCCch----h-hhhHHHHHHHHHHhcCCCcEEEEeCCCccc
Confidence 678888877543345799999999 466221 1 122244433323557799999999876543
No 39
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=64.16 E-value=19 Score=36.83 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=43.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc-------CCC-CCCC----------HHHHhcCCccccCCCcEEEEec
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME-------LPY-GTMA----------DDEMRNLNVPALQTDGLIFLWV 511 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~-------l~Y-~TMS----------ddEIkaLPV~~LqddglLFLWV 511 (537)
-.|+++|+... + .-++||+|++|||+--... .+| +.+. ...|.+--..-|.++|.+++.+
T Consensus 186 i~~~~~D~~~~-l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 186 VTLIESDLFAA-L-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred EEEEECchhhh-C-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 47888887531 1 1258999999999843211 011 1110 0122222223355899998876
Q ss_pred CCcchHHHHHHHhcCCcEE
Q 009324 512 TGRAMELGREWYMFLVMSI 530 (537)
Q Consensus 512 Tnr~Le~grElL~aWGFry 530 (537)
... -+...+++..-||..
T Consensus 264 g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 264 GNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CcC-HHHHHHHHhhCCCEE
Confidence 654 445667777666543
No 40
>PRK03612 spermidine synthase; Provisional
Probab=63.50 E-value=8.3 Score=42.15 Aligned_cols=77 Identities=19% Similarity=0.094 Sum_probs=47.7
Q ss_pred ceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch-----HHHHHHHhc
Q 009324 451 QWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM-----ELGREWYMF 525 (537)
Q Consensus 451 QwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L-----e~grElL~a 525 (537)
.++..|.|.+=-...++||+|++|+|-..... ... +-..|+.+.=-..|.++|++.++...+.. ....+.|++
T Consensus 357 ~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~-~~~-L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 357 TVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPA-LGK-LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred EEEEChHHHHHHhCCCCCCEEEEeCCCCCCcc-hhc-cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 67888988753233469999999987432111 111 22244433333557799999998765443 346677777
Q ss_pred CCcE
Q 009324 526 LVMS 529 (537)
Q Consensus 526 WGFr 529 (537)
=||.
T Consensus 435 ~gf~ 438 (521)
T PRK03612 435 AGLA 438 (521)
T ss_pred cCCE
Confidence 7883
No 41
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=61.53 E-value=5 Score=26.00 Aligned_cols=19 Identities=26% Similarity=0.709 Sum_probs=16.9
Q ss_pred CCCcccccCCCCCccceee
Q 009324 393 DCSFLDTCRHMKTCKYIHY 411 (537)
Q Consensus 393 DCSYLdTC~hm~TCkYvHY 411 (537)
.|.|.-.|...+.|.|.|.
T Consensus 1 ~Ck~~~~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPNCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCCCCCCCcCccCCc
Confidence 4889999999999999994
No 42
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=59.38 E-value=8.7 Score=37.72 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=19.4
Q ss_pred CCceeeccCCcCCCCCCC--CccEEEECCCccc
Q 009324 449 EPQWINCDIRNFRMDILG--QFGVIMADPPWDI 479 (537)
Q Consensus 449 PpQwIncDVR~fD~siLG--KFDVIlADPPWdi 479 (537)
..+.++.|.-.+=-..-+ .||+|++|||+..
T Consensus 94 ~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~ 126 (187)
T COG0742 94 EARVLRNDALRALKQLGTREPFDLVFLDPPYAK 126 (187)
T ss_pred ceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc
Confidence 345666666622111223 4999999999884
No 43
>PHA03412 putative methyltransferase; Provisional
Probab=58.02 E-value=7.5 Score=39.51 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=24.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
..|+++|++.+++ .++||+|+.+||.-..
T Consensus 99 ~~~~~~D~~~~~~--~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 99 ATWINADALTTEF--DTLFDMAISNPPFGKI 127 (241)
T ss_pred CEEEEcchhcccc--cCCccEEEECCCCCCc
Confidence 6799999987765 4699999999999754
No 44
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.75 E-value=5.9 Score=39.65 Aligned_cols=16 Identities=38% Similarity=0.798 Sum_probs=13.3
Q ss_pred CCCCccEEEECCCccc
Q 009324 464 ILGQFGVIMADPPWDI 479 (537)
Q Consensus 464 iLGKFDVIlADPPWdi 479 (537)
+.++||+|+||||+-.
T Consensus 132 lk~~fdiivaDPPfL~ 147 (217)
T KOG3350|consen 132 LKAHFDIIVADPPFLS 147 (217)
T ss_pred HHhcccEEEeCCcccc
Confidence 3478999999999854
No 45
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=51.26 E-value=31 Score=36.03 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=35.5
Q ss_pred CccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcEEEEEE
Q 009324 467 QFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 467 KFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFry~t~I 534 (537)
+||+|++|||- . -+..+-|..|- .+++++|+=|....+..-...|.. ||++....
T Consensus 288 ~~D~v~lDPPR-~-------G~~~~~l~~l~----~~~~ivyvSC~p~tlarDl~~L~~-gY~l~~v~ 342 (362)
T PRK05031 288 NFSTIFVDPPR-A-------GLDDETLKLVQ----AYERILYISCNPETLCENLETLSQ-THKVERFA 342 (362)
T ss_pred CCCEEEECCCC-C-------CCcHHHHHHHH----ccCCEEEEEeCHHHHHHHHHHHcC-CcEEEEEE
Confidence 69999999993 1 23333333331 147888888877666554556655 99988654
No 46
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=51.24 E-value=4.4 Score=43.04 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=38.3
Q ss_pred CceeeccCCcC--CCC-CCCCccEEEECCCcccccc--CCCCCCCHHHHhcCCccccCCCcEEEEecCCcch
Q 009324 450 PQWINCDIRNF--RMD-ILGQFGVIMADPPWDIHME--LPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM 516 (537)
Q Consensus 450 pQwIncDVR~f--D~s-iLGKFDVIlADPPWdi~m~--l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L 516 (537)
..++++|+..+ ++. ..++||+|++|||--.... ..-..-...++..+-..-|.++|++++-.....+
T Consensus 273 v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 273 AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred EEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 46899998765 222 2358999999999633221 0001112334444444556688988766555443
No 47
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=50.22 E-value=38 Score=37.19 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=45.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc--------CCCC-CC-------CHHHHhcC--Cccc-cCCCcEEEEe
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME--------LPYG-TM-------ADDEMRNL--NVPA-LQTDGLIFLW 510 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~--------l~Y~-TM-------SddEIkaL--PV~~-LqddglLFLW 510 (537)
-.++++|+-. ....++||+|+++||+--... ..|. -+ ..+-++.+ -+.. |.++|.+++=
T Consensus 191 v~~~~~D~~~--~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 191 IQIIHSNWFE--NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred eeeeecchhh--hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 3567777632 112358999999999865422 1121 00 01111111 1222 4588988775
Q ss_pred cCCcchHHHHHHHhcCCcEEEE
Q 009324 511 VTGRAMELGREWYMFLVMSIII 532 (537)
Q Consensus 511 VTnr~Le~grElL~aWGFry~t 532 (537)
+....-+...+++..-||..+.
T Consensus 269 ig~~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 269 IGFKQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred ECCchHHHHHHHHHhcCCCceE
Confidence 5555556677888888987554
No 48
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=49.74 E-value=9.6 Score=37.73 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=36.0
Q ss_pred ceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch
Q 009324 451 QWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM 516 (537)
Q Consensus 451 QwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L 516 (537)
.++..|.+.|=-...++||+|++|++-..... ....+ .+..+.=-..|.++|++.+|..++.+
T Consensus 129 ~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~--~~l~~-~ef~~~~~~~L~pgG~lv~~~~~~~~ 191 (270)
T TIGR00417 129 DLQIDDGFKFLADTENTFDVIIVDSTDPVGPA--ETLFT-KEFYELLKKALNEDGIFVAQSESPWI 191 (270)
T ss_pred EEEECchHHHHHhCCCCccEEEEeCCCCCCcc--cchhH-HHHHHHHHHHhCCCcEEEEcCCCccc
Confidence 34556655432223479999999998433221 11122 33333323556799999999776553
No 49
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=47.20 E-value=23 Score=37.94 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=49.4
Q ss_pred ceeec-cCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccc----cCCCcEEEEecCCcchHHHHHHHhc
Q 009324 451 QWINC-DIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPA----LQTDGLIFLWVTGRAMELGREWYMF 525 (537)
Q Consensus 451 QwInc-DVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~----LqddglLFLWVTnr~Le~grElL~a 525 (537)
..++. |+++++|.-. .||.|..|||+-... .|.....++|-.==++. |.+.|++-+|+.-... +.+..
T Consensus 248 ~~~~~~Da~~lpl~~~-~vdaIatDPPYGrst--~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~----~~~~~ 320 (347)
T COG1041 248 PVLKVLDATNLPLRDN-SVDAIATDPPYGRST--KIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPR----HELEE 320 (347)
T ss_pred eEEEecccccCCCCCC-ccceEEecCCCCccc--ccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcch----hhHhh
Confidence 34554 9999995433 599999999986643 35555555553322222 3367999999984444 44455
Q ss_pred CCcEEEEEEe
Q 009324 526 LVMSIIIIIV 535 (537)
Q Consensus 526 WGFry~t~Iv 535 (537)
=||++...+.
T Consensus 321 ~~f~v~~~~~ 330 (347)
T COG1041 321 LGFKVLGRFT 330 (347)
T ss_pred cCceEEEEEE
Confidence 6888776543
No 50
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=46.42 E-value=9.6 Score=39.26 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCceeeccCCcC-C-CCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch
Q 009324 449 EPQWINCDIRNF-R-MDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM 516 (537)
Q Consensus 449 PpQwIncDVR~f-D-~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L 516 (537)
.-.||..|+-.+ . +.-.++||+|++|||=-.+....- .-...+|...-+.-|.++|+|+.=.....+
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~-~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDL-ERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEH-HHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 457899998542 1 223469999999999332221000 011123433333445588988655544444
No 51
>PRK04457 spermidine synthase; Provisional
Probab=45.55 E-value=19 Score=35.89 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=39.9
Q ss_pred ceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEE--ecCCcchHHHHHHH
Q 009324 451 QWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFL--WVTGRAMELGREWY 523 (537)
Q Consensus 451 QwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFL--WVTnr~Le~grElL 523 (537)
.++..|.+.|=-...++||+|++|. |+-. ..+ ..+...++.+.--..|.++|++.+ |.....+....+.|
T Consensus 120 ~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~-~~~-~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l 191 (262)
T PRK04457 120 EVIEADGAEYIAVHRHSTDVILVDG-FDGE-GII-DALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERL 191 (262)
T ss_pred EEEECCHHHHHHhCCCCCCEEEEeC-CCCC-CCc-cccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHH
Confidence 5677787655212336899999994 4321 111 123345555554556789999987 55554444444433
No 52
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=43.56 E-value=56 Score=31.64 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=45.0
Q ss_pred CccEEEECCCcccccc--CC-----C-CCCC----HHHHhcC-------Cccc-cCCCcEEEEecCCcchHHHHHHHhcC
Q 009324 467 QFGVIMADPPWDIHME--LP-----Y-GTMA----DDEMRNL-------NVPA-LQTDGLIFLWVTGRAMELGREWYMFL 526 (537)
Q Consensus 467 KFDVIlADPPWdi~m~--l~-----Y-~TMS----ddEIkaL-------PV~~-LqddglLFLWVTnr~Le~grElL~aW 526 (537)
.+|+|+.|||...... .+ | ..+. ..+..+- .... +-+.|.+++.+.......-...++.=
T Consensus 35 svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~ 114 (302)
T COG0863 35 SVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKL 114 (302)
T ss_pred ceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhC
Confidence 8999999999877532 01 1 1122 0111111 1111 22678888888877777777777779
Q ss_pred CcEEEEEEec
Q 009324 527 VMSIIIIIVH 536 (537)
Q Consensus 527 GFry~t~Iv~ 536 (537)
||.+...|+|
T Consensus 115 gf~~~~~iiw 124 (302)
T COG0863 115 GFEILGKIIW 124 (302)
T ss_pred CCeEeeeEEE
Confidence 9999999998
No 53
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=43.13 E-value=29 Score=34.10 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCcEEEEecCCcchHHHHHHHhcCCcE
Q 009324 503 TDGLIFLWVTGRAMELGREWYMFLVMS 529 (537)
Q Consensus 503 ddglLFLWVTnr~Le~grElL~aWGFr 529 (537)
..+++|+|+|+|.++..+++++.|+.-
T Consensus 33 ~~~~~~v~~TGRs~~~~~~~~~~~~l~ 59 (247)
T PF05116_consen 33 RPEILFVYVTGRSLESVLRLLREYNLP 59 (247)
T ss_dssp CCGEEEEEE-SS-HHHHHHHHHHCT-E
T ss_pred CCCceEEEECCCCHHHHHHHHHhCCCC
Confidence 789999999999999999999999974
No 54
>PRK01581 speE spermidine synthase; Validated
Probab=42.23 E-value=32 Score=37.18 Aligned_cols=64 Identities=20% Similarity=0.171 Sum_probs=39.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA 515 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~ 515 (537)
-+.+.+|.+.|=-..-++||+|++|.|-.... +-..+-..|..+.--..|.++|++..|..++.
T Consensus 209 V~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~--~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 209 VNVHVCDAKEFLSSPSSLYDVIIIDFPDPATE--LLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred eEEEECcHHHHHHhcCCCccEEEEcCCCcccc--chhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 36678888865333446899999998743321 01122234444443445789999999987654
No 55
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=41.31 E-value=21 Score=37.19 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=33.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchH
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAME 517 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le 517 (537)
..++..|+-. ...++||+|+.+||........|. ..+++.+-=...|.++|.+++ |.|+.+.
T Consensus 247 ~~~~~~D~~~---~~~~~fDlIvsNPPFH~g~~~~~~--~~~~~i~~a~~~LkpgG~L~i-Van~~l~ 308 (342)
T PRK09489 247 GEVFASNVFS---DIKGRFDMIISNPPFHDGIQTSLD--AAQTLIRGAVRHLNSGGELRI-VANAFLP 308 (342)
T ss_pred CEEEEccccc---ccCCCccEEEECCCccCCccccHH--HHHHHHHHHHHhcCcCCEEEE-EEeCCCC
Confidence 4566666633 135799999999996432211111 112221111233558898876 6677663
No 56
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=40.23 E-value=14 Score=39.80 Aligned_cols=67 Identities=18% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCceeeccCCcC--CCCCCC-CccEEEECCCccccccCC-CC-CCCHHHHhcCCccccCCCcEEEEecCCcc
Q 009324 449 EPQWINCDIRNF--RMDILG-QFGVIMADPPWDIHMELP-YG-TMADDEMRNLNVPALQTDGLIFLWVTGRA 515 (537)
Q Consensus 449 PpQwIncDVR~f--D~siLG-KFDVIlADPPWdi~m~l~-Y~-TMSddEIkaLPV~~LqddglLFLWVTnr~ 515 (537)
+..||+.|+=.+ .+.--| +||||++|||=-...... ++ .-..-+|..+-+.-|.++|+++.=.-...
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 357999987332 122234 999999999954432100 00 11122334444455568887766544333
No 57
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=38.17 E-value=19 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=20.0
Q ss_pred CceeeccCCcC-C-CCCCC-CccEEEECCCccc
Q 009324 450 PQWINCDIRNF-R-MDILG-QFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~f-D-~siLG-KFDVIlADPPWdi 479 (537)
.++++.|+..+ . +...+ .||||++|||...
T Consensus 101 ~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 101 AEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN 133 (189)
T ss_pred EEEEehhHHHHHHHhhccCCCceEEEECcCCCC
Confidence 46888888433 2 11122 4899999999864
No 58
>PRK15043 transcriptional regulator MirA; Provisional
Probab=36.85 E-value=42 Score=34.26 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=40.4
Q ss_pred CCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcC---CcEE
Q 009324 466 GQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFL---VMSI 530 (537)
Q Consensus 466 GKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aW---GFry 530 (537)
..|.|.+++.|+.. |-++|-+...+|+|+....-..-.+.+.+| ||.+
T Consensus 188 ~g~~v~vl~~~~~~-----------------~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~g~~~ 238 (243)
T PRK15043 188 QGWRIDVLAHSLNQ-----------------LRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDI 238 (243)
T ss_pred CCceEEEeCCcccc-----------------cChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCc
Confidence 47999999999876 777888888899999999888888899888 5544
No 59
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=35.02 E-value=1.1e+02 Score=29.41 Aligned_cols=28 Identities=11% Similarity=0.294 Sum_probs=21.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWD 478 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWd 478 (537)
..|+++|+..+++. .++||+|+....++
T Consensus 87 ~~~~~~d~~~~~~~-~~~fD~V~s~~~l~ 114 (251)
T PRK10258 87 DHYLAGDIESLPLA-TATFDLAWSNLAVQ 114 (251)
T ss_pred CCEEEcCcccCcCC-CCcEEEEEECchhh
Confidence 36899999887653 35899999877654
No 60
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=32.87 E-value=46 Score=35.63 Aligned_cols=70 Identities=10% Similarity=0.226 Sum_probs=36.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcC---CccccCCCcEEEEecCCcchHHHHHHHhcC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNL---NVPALQTDGLIFLWVTGRAMELGREWYMFL 526 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaL---PV~~LqddglLFLWVTnr~Le~grElL~aW 526 (537)
..|+..|.-. ....++||+|+++||+..... ++++...++ --..|.++|.+++= .+++++-...+-+.+
T Consensus 283 v~~~~~D~l~--~~~~~~fDlIlsNPPfh~~~~-----~~~~ia~~l~~~a~~~LkpGG~L~iV-~nr~l~y~~~L~~~f 354 (378)
T PRK15001 283 CEFMINNALS--GVEPFRFNAVLCNPPFHQQHA-----LTDNVAWEMFHHARRCLKINGELYIV-ANRHLDYFHKLKKIF 354 (378)
T ss_pred EEEEEccccc--cCCCCCEEEEEECcCcccCcc-----CCHHHHHHHHHHHHHhcccCCEEEEE-EecCcCHHHHHHHHc
Confidence 3566666532 112358999999999976422 222222221 12335578865443 467665443333333
Q ss_pred C
Q 009324 527 V 527 (537)
Q Consensus 527 G 527 (537)
|
T Consensus 355 g 355 (378)
T PRK15001 355 G 355 (378)
T ss_pred C
Confidence 3
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=32.35 E-value=54 Score=31.86 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=19.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADP 475 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADP 475 (537)
..|+++|+..+.-...+.||+|++.-
T Consensus 95 v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 95 MQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred eEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 47899999877533457999999643
No 62
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=32.05 E-value=31 Score=39.28 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=24.6
Q ss_pred CceeeccCCcCCCCC-CCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDI-LGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~si-LGKFDVIlADPPWdi~ 480 (537)
..++++|++.+.... .++||+|+.||||-..
T Consensus 285 i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 285 ITFEVKDVADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred eEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence 468899999886543 3689999999999654
No 63
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.93 E-value=63 Score=24.90 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=23.0
Q ss_pred CcEEEEecCCcchHHHHHHHhcCCcEEE
Q 009324 504 DGLIFLWVTGRAMELGREWYMFLVMSII 531 (537)
Q Consensus 504 dglLFLWVTnr~Le~grElL~aWGFry~ 531 (537)
.+.+++++.....+.+.+.|+++||++.
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 4678888876666789999999999875
No 64
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=31.48 E-value=25 Score=34.80 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=21.3
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi 479 (537)
-.+++.|.+.+.. ..++||+|++|||..-
T Consensus 124 v~~~~~D~~~~~~-~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 124 VAVTNFDGRVFGA-AVPKFDAILLDAPCSG 152 (264)
T ss_pred EEEecCCHHHhhh-hccCCCEEEEcCCCCC
Confidence 4667788876643 2457999999999753
No 65
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=30.91 E-value=37 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADP 475 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADP 475 (537)
.-+|++.|+ .++++..++||+|+++-
T Consensus 53 ~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 53 RITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CeEEEECcc-ccCcccCCCCCEEEECC
Confidence 357999999 88888899999999876
No 66
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=30.52 E-value=29 Score=37.86 Aligned_cols=111 Identities=21% Similarity=0.386 Sum_probs=60.5
Q ss_pred CCCCCCCCcccccCCCCCccceeeeecCCCCCCccccCCCCCCCCCCCCCCCCcccccccCCCceeeccCCcCCCCC---
Q 009324 388 DISLGDCSFLDTCRHMKTCKYIHYELDPERDLPPALMGAGLPPQKPLKPQRPEYCSEVELGEPQWINCDIRNFRMDI--- 464 (537)
Q Consensus 388 D~sLGDCSYLdTC~hm~TCkYvHYe~d~~~~~~~~~~~~~~~~~~~l~~~r~~~~s~~~l~PpQwIncDVR~fD~si--- 464 (537)
|+-.|-=|+|=+|-|-.. |-+-. +|.-.+..+.-....+++....-|- .-+||+ ||=..|++.
T Consensus 214 DPFVGTGslLvsaa~FGa-----~viGt--DIDyr~vragrg~~~si~aNFkQYg-----~~~~fl--dvl~~D~sn~~~ 279 (421)
T KOG2671|consen 214 DPFVGTGSLLVSAAHFGA-----YVIGT--DIDYRTVRAGRGEDESIKANFKQYG-----SSSQFL--DVLTADFSNPPL 279 (421)
T ss_pred cCccccCceeeehhhhcc-----eeecc--ccchheeecccCCCcchhHhHHHhC-----Ccchhh--heeeecccCcch
Confidence 566788999999986443 43432 2222211100001111111000110 135553 455555554
Q ss_pred --CCCccEEEECCCccccc-------------------cCCCCCCCHHHHhcC-------CccccCCCcEEEEecC
Q 009324 465 --LGQFGVIMADPPWDIHM-------------------ELPYGTMADDEMRNL-------NVPALQTDGLIFLWVT 512 (537)
Q Consensus 465 --LGKFDVIlADPPWdi~m-------------------~l~Y~TMSddEIkaL-------PV~~LqddglLFLWVT 512 (537)
.-+||.|++|||+-+.- ..||++...-.+..+ --+.|.++|-+-.|..
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 34999999999997651 368888876665544 3334456788888876
No 67
>smart00356 ZnF_C3H1 zinc finger.
Probab=30.08 E-value=30 Score=22.57 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=9.1
Q ss_pred ccCCCCCcccee
Q 009324 399 TCRHMKTCKYIH 410 (537)
Q Consensus 399 TC~hm~TCkYvH 410 (537)
.|..-.+|+|.|
T Consensus 14 ~C~~g~~C~~~H 25 (27)
T smart00356 14 YCPYGDRCKFAH 25 (27)
T ss_pred CCCCCCCcCCCC
Confidence 567677788887
No 68
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=29.26 E-value=15 Score=34.85 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=32.3
Q ss_pred eccCCcCCCCCCCCccEEEECCCccccc----cCCCCC--CCHHHHhcC-C-cccc-CCCcEEEEecCCc--chHHHHHH
Q 009324 454 NCDIRNFRMDILGQFGVIMADPPWDIHM----ELPYGT--MADDEMRNL-N-VPAL-QTDGLIFLWVTGR--AMELGREW 522 (537)
Q Consensus 454 ncDVR~fD~siLGKFDVIlADPPWdi~m----~l~Y~T--MSddEIkaL-P-V~~L-qddglLFLWVTnr--~Le~grEl 522 (537)
+.|-+.+......+-++||+|||...+. ...|.+ +.+++-..| . +..+ .+.|. -.++++. ..+..+++
T Consensus 164 ~~d~~~~~~~~~~~~d~vYlDPPY~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-k~~~s~~~~~~~~i~~l 242 (260)
T PF02086_consen 164 NRDFDEVIERYDSPNDFVYLDPPYYSTQYSRNYHFYYTNMFYDEDHIRLAEFLKKLKSKFGG-KFMLSNDFRDTPLIREL 242 (260)
T ss_dssp EC-CHGGGTT--TTE-EEEE--S-TT-----S--GGGGSS--HHHHHHHHHHHHHH-HHTT--EEEEEEESECSHHHHHH
T ss_pred ehhHHHHHhhccCCCeEEEEcCccccccCcCCcccccCCCCChhHHHHHHHHHHHHHHhcCC-EEEEEEChhcCHHHHHH
Confidence 3343333333345788999999997732 122333 233321111 0 1111 11122 2344555 67788888
Q ss_pred Hhc---CCcEEEEE
Q 009324 523 YMF---LVMSIIII 533 (537)
Q Consensus 523 L~a---WGFry~t~ 533 (537)
+.. |++..+..
T Consensus 243 ~~~y~~~~i~~~~~ 256 (260)
T PF02086_consen 243 YKSYNNFNIIEIKE 256 (260)
T ss_dssp TTTSEESEEEEE--
T ss_pred HhcCccCcceeeee
Confidence 888 77765544
No 69
>PRK10742 putative methyltransferase; Provisional
Probab=29.16 E-value=30 Score=35.50 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=12.3
Q ss_pred CccEEEECCCcccc
Q 009324 467 QFGVIMADPPWDIH 480 (537)
Q Consensus 467 KFDVIlADPPWdi~ 480 (537)
.|||||+|||+...
T Consensus 164 ~fDVVYlDPMfp~~ 177 (250)
T PRK10742 164 RPQVVYLDPMFPHK 177 (250)
T ss_pred CCcEEEECCCCCCC
Confidence 69999999998764
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=27.53 E-value=94 Score=29.12 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=43.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEE-ecCCcchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFL-WVTGRAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFL-WVTnr~Le~grElL~aWGF 528 (537)
-.+++.|...+-....++||.|++...+. ...++..-=...|.++|.+++ |++-..+..+.++|+.=||
T Consensus 94 v~~~~~d~~~~l~~~~~~~D~V~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 94 IVLIKGEAPEILFTINEKFDRIFIGGGSE----------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred eEEEEechhhhHhhcCCCCCEEEECCCcc----------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 35667777643212236899999865321 122332211233557886655 7777778899999998888
Q ss_pred EE
Q 009324 529 SI 530 (537)
Q Consensus 529 ry 530 (537)
.+
T Consensus 164 ~~ 165 (198)
T PRK00377 164 NL 165 (198)
T ss_pred Ce
Confidence 43
No 71
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=26.31 E-value=1.8e+02 Score=27.94 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=45.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcE
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMS 529 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFr 529 (537)
-.|+++|+..+.. .++||+|+++- + -..+++..-=...|.++|.+++=........-.++.++-|..
T Consensus 97 i~~~~~d~~~~~~--~~~fDlV~~~~---------~--~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 97 VTVVHGRAEEFGQ--EEKFDVVTSRA---------V--ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGK 163 (187)
T ss_pred EEEEeccHhhCCC--CCCccEEEEcc---------c--cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCce
Confidence 5789999887765 67999999851 1 123344332233456888876554443344444566666888
Q ss_pred EEEEEe
Q 009324 530 IIIIIV 535 (537)
Q Consensus 530 y~t~Iv 535 (537)
+-++|+
T Consensus 164 ~~~~~~ 169 (187)
T PRK00107 164 VEEVIE 169 (187)
T ss_pred EeeeEE
Confidence 777765
No 72
>PLN02823 spermine synthase
Probab=26.05 E-value=56 Score=34.37 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=35.6
Q ss_pred ceeeccCCcCCCCCCCCccEEEECC--CccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC
Q 009324 451 QWINCDIRNFRMDILGQFGVIMADP--PWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG 513 (537)
Q Consensus 451 QwIncDVR~fD~siLGKFDVIlADP--PWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn 513 (537)
..+..|.|.|=-...++||||++|. ||.. ...|.-.+.+=+..+--..|.++|++.+|++.
T Consensus 160 ~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~--~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 160 ELIINDARAELEKRDEKFDVIIGDLADPVEG--GPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred EEEEChhHHHHhhCCCCccEEEecCCCcccc--CcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 4566666654212246899999996 3322 11233334332221333667899999999875
No 73
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=25.78 E-value=44 Score=32.17 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=26.6
Q ss_pred cccCCCcEEEEecCCcchHHHHHHHhcCCcE
Q 009324 499 PALQTDGLIFLWVTGRAMELGREWYMFLVMS 529 (537)
Q Consensus 499 ~~LqddglLFLWVTnr~Le~grElL~aWGFr 529 (537)
.++...|+.|.++|+|.+...+++++.+|..
T Consensus 31 ~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 31 EDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 3456889999999999999999999888864
No 74
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=25.64 E-value=47 Score=35.34 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=21.6
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWD 478 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWd 478 (537)
..+++.|.+.+.-...++||+|++|||..
T Consensus 303 v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 303 IETKALDARKVHEKFAEKFDKILVDAPCS 331 (444)
T ss_pred EEEEeCCcccccchhcccCCEEEEcCCCC
Confidence 57888888876322227899999999964
No 75
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=25.51 E-value=56 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.1
Q ss_pred CceeeccCCcCCCCCC-CCccEEEECCCc
Q 009324 450 PQWINCDIRNFRMDIL-GQFGVIMADPPW 477 (537)
Q Consensus 450 pQwIncDVR~fD~siL-GKFDVIlADPPW 477 (537)
-.|+++|+..++-. + ++||+|++++++
T Consensus 56 i~~~~~d~~~l~~~-~~~~~D~I~~~~~l 83 (152)
T PF13847_consen 56 IEFIQGDIEDLPQE-LEEKFDIIISNGVL 83 (152)
T ss_dssp EEEEESBTTCGCGC-SSTTEEEEEEESTG
T ss_pred cceEEeehhccccc-cCCCeeEEEEcCch
Confidence 58999999997733 2 899999999988
No 76
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=24.59 E-value=47 Score=36.03 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=13.7
Q ss_pred CCCccEEEECCCcccc
Q 009324 465 LGQFGVIMADPPWDIH 480 (537)
Q Consensus 465 LGKFDVIlADPPWdi~ 480 (537)
.++||+|++.|||-..
T Consensus 110 ~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 110 LDLFDIVITNPPYGRL 125 (524)
T ss_pred cCcccEEEeCCCcccc
Confidence 4789999999999753
No 77
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.19 E-value=49 Score=32.69 Aligned_cols=30 Identities=23% Similarity=0.616 Sum_probs=25.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
.-+++||+-...+.- |-||+.++|||+--+
T Consensus 98 idlLqcdildle~~~-g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 98 IDLLQCDILDLELKG-GIFDTAVINPPFGTK 127 (185)
T ss_pred hheeeeeccchhccC-CeEeeEEecCCCCcc
Confidence 378999999887755 899999999999654
No 78
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=24.16 E-value=55 Score=35.60 Aligned_cols=31 Identities=16% Similarity=0.559 Sum_probs=26.2
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
-.+|.+.|++.|.-.. +.||+|+.+|||-..
T Consensus 282 ~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeR 312 (381)
T COG0116 282 LIEFKQADATDLKEPL-EEYGVVISNPPYGER 312 (381)
T ss_pred eEEEEEcchhhCCCCC-CcCCEEEeCCCcchh
Confidence 3689999999887554 899999999999765
No 79
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=24.11 E-value=60 Score=29.58 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=23.3
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi 479 (537)
.++++.|+..+++.. ++||+|+++||..+
T Consensus 61 v~ii~~D~~~~~~~~-~~~d~vi~n~Py~~ 89 (169)
T smart00650 61 LTVIHGDALKFDLPK-LQPYKVVGNLPYNI 89 (169)
T ss_pred EEEEECchhcCCccc-cCCCEEEECCCccc
Confidence 568999998887643 37999999999865
No 80
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=23.68 E-value=47 Score=28.85 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=13.3
Q ss_pred CccEEEECCCccccc
Q 009324 467 QFGVIMADPPWDIHM 481 (537)
Q Consensus 467 KFDVIlADPPWdi~m 481 (537)
|||+|+-.|||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 799999999997764
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=23.64 E-value=75 Score=29.80 Aligned_cols=82 Identities=10% Similarity=0.079 Sum_probs=49.7
Q ss_pred CceeeccCCcCCCCC--CCCccEEEECC--CccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch-HHHHHHH-
Q 009324 450 PQWINCDIRNFRMDI--LGQFGVIMADP--PWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM-ELGREWY- 523 (537)
Q Consensus 450 pQwIncDVR~fD~si--LGKFDVIlADP--PWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L-e~grElL- 523 (537)
-.++++|+..+.-.. -+.||.|++++ ||.-..... ..+..+++.+.=-..|.++|.+++-..+..+ +..++.|
T Consensus 68 i~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~-~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~ 146 (194)
T TIGR00091 68 LHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNK-RRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS 146 (194)
T ss_pred EEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccc-cccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 478999998754222 24799999985 674432111 1233344433323345689999888777654 4566655
Q ss_pred hcCCcEEEE
Q 009324 524 MFLVMSIII 532 (537)
Q Consensus 524 ~aWGFry~t 532 (537)
+.+||+...
T Consensus 147 ~~~~f~~~~ 155 (194)
T TIGR00091 147 ENDLFENTS 155 (194)
T ss_pred hCCCeEecc
Confidence 566688654
No 82
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=22.55 E-value=1.4e+02 Score=29.96 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=49.0
Q ss_pred CCceeeccCCcCCCCC-CCCccEEEECCCccccccCCCCC-CCHH------HHhcCCccccCCCcEEE-----EecC--C
Q 009324 449 EPQWINCDIRNFRMDI-LGQFGVIMADPPWDIHMELPYGT-MADD------EMRNLNVPALQTDGLIF-----LWVT--G 513 (537)
Q Consensus 449 PpQwIncDVR~fD~si-LGKFDVIlADPPWdi~m~l~Y~T-MSdd------EIkaLPV~~LqddglLF-----LWVT--n 513 (537)
|...+++||+.++... .+++|+|+++||-+-........ .++. ++..+ |..+.+.-+++ ++.. +
T Consensus 43 ~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~-i~~~~P~~~v~ENV~g~~~~~~~ 121 (275)
T cd00315 43 PNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRI-LKEKKPKYFLLENVKGLLTHDNG 121 (275)
T ss_pred CCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhcCCCCCchHHHHHHHHHH-HHhcCCCEEEEEcCcchhccCch
Confidence 4447889999998765 67999999999998664211111 1110 11111 11222332222 1111 2
Q ss_pred cchHHHHHHHhcCCcEEEEEEe
Q 009324 514 RAMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 514 r~Le~grElL~aWGFry~t~Iv 535 (537)
..+..-.+.|+..||.+...++
T Consensus 122 ~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 122 NTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred HHHHHHHHHHHhCCcEEEEEEE
Confidence 3356677788999999877665
No 83
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=22.55 E-value=47 Score=35.64 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=22.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWD 478 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWd 478 (537)
..+++.|.+.++-...++||.|++|||=.
T Consensus 290 v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 290 IEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred EEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 46788888876522346899999999974
No 84
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=22.12 E-value=94 Score=29.10 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHhh---hcCCceeeeE-EEecCeeeEEEEEeehhhHh
Q 009324 176 GTVLAVEIALKSIADE---NNNGGVELDE-LSISGKSRVMVLSIDKVRLL 221 (537)
Q Consensus 176 g~~~av~~~L~~~a~~---~~~~~v~~~e-~~i~gk~~~~V~~id~~~L~ 221 (537)
+.|.++...+|+|.-. ...+.+++.. +++|.+-|++|+.++-..|+
T Consensus 30 ~lI~~~aWLlkR~~~~~~~~~~~~lkVva~~slG~RErvvvVeV~~~~Ll 79 (124)
T PRK11486 30 ALILAAAWLVKRLGFAPKRTGVRGLKISASASLGARERVVIVDVEDARLV 79 (124)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCcceEEEEeeccCCccEEEEEEECCEEEE
Confidence 4466778888998532 1233466665 89999999999999887764
No 85
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=21.43 E-value=17 Score=36.08 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=38.1
Q ss_pred ceeeccCCcCCCCCCC-CccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch
Q 009324 451 QWINCDIRNFRMDILG-QFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM 516 (537)
Q Consensus 451 QwIncDVR~fD~siLG-KFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L 516 (537)
..+..|-|.|=-.... +||+|++|.+=....... +-..|.-++--..|.++|++.+|..++.+
T Consensus 133 ~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~---l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~ 196 (246)
T PF01564_consen 133 RIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPN---LFTREFYQLCKRRLKPDGVLVLQAGSPFL 196 (246)
T ss_dssp EEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGG---GSSHHHHHHHHHHEEEEEEEEEEEEETTT
T ss_pred EEEEhhhHHHHHhccCCcccEEEEeCCCCCCCccc---ccCHHHHHHHHhhcCCCcEEEEEccCccc
Confidence 4566666655334445 999999998742222111 33344444444567799999999976554
No 86
>PLN02672 methionine S-methyltransferase
Probab=21.10 E-value=1.7e+02 Score=35.85 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=50.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc--------C-------CC---CCCCH-------------HHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME--------L-------PY---GTMAD-------------DEMRNLNV 498 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~--------l-------~Y---~TMSd-------------dEIkaLPV 498 (537)
-.|+++|+...--...++||+|+..||.=-..+ . .| +-+.. ..|..--.
T Consensus 186 V~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~ 265 (1082)
T PLN02672 186 VEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 265 (1082)
T ss_pred EEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHH
Confidence 578899986432111237999999999843211 0 02 11111 11222222
Q ss_pred cccCCCcEEEEecCCcchHHHH-HHHhcCCcEEEE
Q 009324 499 PALQTDGLIFLWVTGRAMELGR-EWYMFLVMSIII 532 (537)
Q Consensus 499 ~~LqddglLFLWVTnr~Le~gr-ElL~aWGFry~t 532 (537)
.-|.++|++++=.....-+... ++++..||+...
T Consensus 266 ~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 266 SVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred HhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeE
Confidence 3355889998888888888778 699999988754
No 87
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=20.71 E-value=2.4e+02 Score=26.12 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.0
Q ss_pred ceeeccCCcCCC-------CCCCCccEEEECCC
Q 009324 451 QWINCDIRNFRM-------DILGQFGVIMADPP 476 (537)
Q Consensus 451 QwIncDVR~fD~-------siLGKFDVIlADPP 476 (537)
.+++.|+...+. ...++||+|++|++
T Consensus 75 ~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 75 DFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred eEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 566777765431 12358999999963
No 88
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=20.08 E-value=77 Score=29.57 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHhccccCChhhH
Q 009324 140 VPFKPIDSSIIARKLESDASLTSSEK 165 (537)
Q Consensus 140 ~~~~pids~~i~~~l~~~~~~~~~~k 165 (537)
=.|+|+|-++|-+||+++.+.||.+-
T Consensus 60 k~~y~MDL~tIe~RL~ng~Y~tp~~F 85 (119)
T cd05491 60 KKFYNMDLDTIEERLWNGYYATPKDF 85 (119)
T ss_pred CeEeccCHHHHHHHHhcCCCCCHHHH
Confidence 46899999999999999999999764
Done!