Query 009324
Match_columns 537
No_of_seqs 185 out of 401
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 23:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1boo_A Protein (N-4 cytosine-s 97.4 8.4E-05 2.9E-09 72.6 4.3 88 449-536 14-120 (323)
2 1g60_A Adenine-specific methyl 97.1 0.00018 6E-09 67.8 2.8 85 451-536 6-99 (260)
3 2zig_A TTHA0409, putative modi 96.4 0.0017 5.9E-08 62.2 3.6 88 446-536 18-136 (297)
4 1eg2_A Modification methylase 96.4 0.00095 3.2E-08 65.8 1.6 85 451-536 40-140 (319)
5 3lpm_A Putative methyltransfer 95.7 0.0058 2E-07 56.3 3.3 84 450-533 101-198 (259)
6 3evz_A Methyltransferase; NYSG 94.6 0.042 1.4E-06 48.8 5.5 85 449-533 105-203 (230)
7 4dzr_A Protein-(glutamine-N5) 93.3 0.049 1.7E-06 46.7 3.3 83 449-532 80-188 (215)
8 3q87_B N6 adenine specific DNA 93.1 0.14 4.6E-06 44.5 5.7 78 450-534 63-147 (170)
9 2ozv_A Hypothetical protein AT 92.7 0.13 4.4E-06 47.9 5.4 81 450-531 92-189 (260)
10 1wy7_A Hypothetical protein PH 91.8 0.18 6.2E-06 43.9 4.9 72 449-532 98-171 (207)
11 1ne2_A Hypothetical protein TA 91.4 0.11 3.7E-06 45.4 3.0 69 449-530 96-164 (200)
12 3grz_A L11 mtase, ribosomal pr 90.1 0.46 1.6E-05 41.4 5.9 73 450-535 111-184 (205)
13 2qm3_A Predicted methyltransfe 89.6 0.54 1.9E-05 46.2 6.5 77 449-533 222-306 (373)
14 3tma_A Methyltransferase; thum 88.1 0.21 7.2E-06 48.3 2.4 81 449-533 255-336 (354)
15 2frn_A Hypothetical protein PH 86.8 0.34 1.2E-05 45.6 3.0 70 450-532 177-253 (278)
16 2b3t_A Protein methyltransfera 86.7 0.4 1.4E-05 44.5 3.3 80 450-531 161-258 (276)
17 2yx1_A Hypothetical protein MJ 84.6 0.38 1.3E-05 46.9 2.2 67 450-531 245-312 (336)
18 2pwy_A TRNA (adenine-N(1)-)-me 84.0 0.67 2.3E-05 41.5 3.3 71 450-533 150-221 (258)
19 1yb2_A Hypothetical protein TA 83.2 0.64 2.2E-05 43.2 3.0 71 450-534 164-235 (275)
20 3v97_A Ribosomal RNA large sub 82.1 0.22 7.7E-06 54.0 -0.6 83 450-532 592-678 (703)
21 1o54_A SAM-dependent O-methylt 79.4 1.2 4.1E-05 41.2 3.4 71 450-534 166-237 (277)
22 2yxd_A Probable cobalt-precorr 79.0 1.2 3.9E-05 37.2 2.8 69 450-533 85-154 (183)
23 3a27_A TYW2, uncharacterized p 76.4 1.2 4.1E-05 41.9 2.5 68 450-530 171-245 (272)
24 2xyq_A Putative 2'-O-methyl tr 73.5 3.1 0.00011 40.7 4.6 83 450-534 107-195 (290)
25 3bwc_A Spermidine synthase; SA 73.1 0.76 2.6E-05 44.1 0.2 80 450-532 151-236 (304)
26 3tm4_A TRNA (guanine N2-)-meth 72.6 2.2 7.6E-05 42.1 3.4 78 449-533 269-349 (373)
27 1l3i_A Precorrin-6Y methyltran 72.5 1.4 4.9E-05 36.8 1.7 71 450-531 84-155 (192)
28 3cgg_A SAM-dependent methyltra 71.5 1.6 5.4E-05 36.6 1.8 76 450-533 91-172 (195)
29 1ixk_A Methyltransferase; open 70.6 2.1 7.1E-05 41.3 2.6 83 449-532 170-271 (315)
30 2ipx_A RRNA 2'-O-methyltransfe 69.8 1.8 6.1E-05 38.8 1.8 75 450-534 128-215 (233)
31 3e05_A Precorrin-6Y C5,15-meth 68.8 9.3 0.00032 33.2 6.2 70 450-530 92-162 (204)
32 3ocj_A Putative exported prote 67.4 6.5 0.00022 36.8 5.2 76 450-534 172-289 (305)
33 1g55_A DNA cytosine methyltran 67.0 4.1 0.00014 40.1 3.9 83 451-535 50-148 (343)
34 3mb5_A SAM-dependent methyltra 66.9 1.9 6.5E-05 38.8 1.4 69 450-532 147-218 (255)
35 3c0k_A UPF0064 protein YCCW; P 66.6 1.2 4.2E-05 44.0 0.1 81 450-530 273-364 (396)
36 2jjq_A Uncharacterized RNA met 66.6 5 0.00017 40.9 4.6 68 450-533 339-406 (425)
37 1uwv_A 23S rRNA (uracil-5-)-me 62.9 9.4 0.00032 38.5 5.7 74 449-533 335-411 (433)
38 3njr_A Precorrin-6Y methylase; 62.5 11 0.00039 33.5 5.6 71 450-533 106-177 (204)
39 3p9n_A Possible methyltransfer 61.0 1.8 6.2E-05 37.4 0.1 60 449-512 94-154 (189)
40 1yzh_A TRNA (guanine-N(7)-)-me 60.8 10 0.00035 33.4 4.9 84 449-533 92-179 (214)
41 1dus_A MJ0882; hypothetical pr 60.7 2 6.9E-05 35.9 0.3 69 450-526 104-173 (194)
42 2oyr_A UPF0341 protein YHIQ; a 59.8 3.1 0.00011 40.0 1.5 30 450-479 147-176 (258)
43 2igt_A SAM dependent methyltra 59.8 3.4 0.00012 40.5 1.8 82 450-531 205-299 (332)
44 2ih2_A Modification methylase 59.2 4.6 0.00016 39.2 2.6 77 450-528 83-186 (421)
45 1xdz_A Methyltransferase GIDB; 58.8 8.9 0.00031 34.6 4.3 74 450-534 122-200 (240)
46 3kkz_A Uncharacterized protein 57.9 21 0.00073 32.3 6.6 77 450-535 98-195 (267)
47 1i9g_A Hypothetical protein RV 56.8 4 0.00014 37.2 1.6 67 450-531 155-225 (280)
48 3ldg_A Putative uncharacterize 56.7 5.5 0.00019 40.2 2.7 29 450-480 285-313 (384)
49 3ldu_A Putative methylase; str 56.5 5.5 0.00019 39.9 2.7 29 450-480 286-314 (385)
50 3gdh_A Trimethylguanosine synt 56.0 3.4 0.00012 36.8 1.0 29 450-480 129-157 (241)
51 2qfm_A Spermine synthase; sper 55.8 4.3 0.00015 41.6 1.8 72 451-524 248-327 (364)
52 1jsx_A Glucose-inhibited divis 55.6 9.6 0.00033 32.9 3.8 68 450-532 117-184 (207)
53 3ll7_A Putative methyltransfer 54.6 2 7E-05 44.3 -0.8 32 449-480 144-176 (410)
54 3f4k_A Putative methyltransfer 54.1 27 0.00092 31.0 6.5 77 450-535 98-195 (257)
55 2fpo_A Methylase YHHF; structu 53.6 4 0.00014 36.2 1.0 59 449-513 104-162 (202)
56 3k0b_A Predicted N6-adenine-sp 52.4 7.1 0.00024 39.4 2.7 29 450-480 292-320 (393)
57 1iy9_A Spermidine synthase; ro 52.4 10 0.00035 35.8 3.7 63 450-515 131-193 (275)
58 1y8c_A S-adenosylmethionine-de 52.3 13 0.00043 32.5 4.0 25 449-475 85-109 (246)
59 3hm2_A Precorrin-6Y C5,15-meth 52.1 17 0.00057 30.3 4.6 70 452-533 79-150 (178)
60 3dtn_A Putative methyltransfer 52.0 19 0.00065 31.6 5.1 52 449-510 93-147 (234)
61 3dh0_A SAM dependent methyltra 52.0 22 0.00074 30.8 5.4 77 450-534 90-179 (219)
62 2yvl_A TRMI protein, hypotheti 52.0 16 0.00055 32.3 4.7 68 450-531 142-210 (248)
63 3hnr_A Probable methyltransfer 51.9 36 0.0012 29.4 6.8 75 449-533 90-198 (220)
64 4dcm_A Ribosomal RNA large sub 51.7 4.1 0.00014 40.7 0.9 62 450-516 277-338 (375)
65 3adn_A Spermidine synthase; am 51.6 6.6 0.00022 38.0 2.3 62 450-514 140-201 (294)
66 2oo3_A Protein involved in cat 51.5 5.2 0.00018 39.9 1.5 40 467-513 159-200 (283)
67 1nv8_A HEMK protein; class I a 50.8 7.8 0.00027 36.9 2.6 74 450-526 175-264 (284)
68 3bt7_A TRNA (uracil-5-)-methyl 50.8 10 0.00036 37.2 3.6 55 467-534 295-349 (369)
69 1ej0_A FTSJ; methyltransferase 50.0 12 0.0004 30.4 3.2 79 450-532 64-157 (180)
70 3sm3_A SAM-dependent methyltra 49.8 25 0.00087 30.3 5.5 78 450-535 85-206 (235)
71 2esr_A Methyltransferase; stru 48.0 3.5 0.00012 34.9 -0.3 58 450-513 83-140 (177)
72 2ift_A Putative methylase HI07 47.5 6.5 0.00022 34.8 1.4 60 450-515 106-167 (201)
73 2h00_A Methyltransferase 10 do 47.3 13 0.00044 33.5 3.4 30 450-479 118-152 (254)
74 2zfu_A Nucleomethylin, cerebra 47.2 28 0.00096 30.2 5.4 75 450-533 99-176 (215)
75 3eey_A Putative rRNA methylase 47.2 7.2 0.00025 33.5 1.6 28 450-477 76-103 (197)
76 3h2b_A SAM-dependent methyltra 47.0 26 0.00088 30.1 5.1 81 449-535 85-181 (203)
77 1o9g_A RRNA methyltransferase; 44.9 9.6 0.00033 34.5 2.1 58 451-509 148-212 (250)
78 2r6z_A UPF0341 protein in RSP 44.5 3.3 0.00011 39.3 -1.0 30 450-479 141-173 (258)
79 3cc8_A Putative methyltransfer 44.1 51 0.0018 28.2 6.5 77 451-534 76-183 (230)
80 3g89_A Ribosomal RNA small sub 43.7 17 0.00058 33.8 3.7 75 449-534 131-210 (249)
81 1ve3_A Hypothetical protein PH 43.0 17 0.00058 31.5 3.3 27 450-477 87-113 (227)
82 3axs_A Probable N(2),N(2)-dime 41.4 4.3 0.00015 41.4 -0.8 69 450-529 107-179 (392)
83 2fhp_A Methylase, putative; al 41.1 4.5 0.00015 34.1 -0.6 57 450-513 96-156 (187)
84 3lcc_A Putative methyl chlorid 41.1 26 0.0009 30.9 4.3 75 450-534 117-205 (235)
85 1inl_A Spermidine synthase; be 40.8 7.8 0.00027 37.1 0.9 62 450-514 146-208 (296)
86 3dlc_A Putative S-adenosyl-L-m 40.4 13 0.00043 31.8 2.1 77 450-534 95-201 (219)
87 2b9e_A NOL1/NOP2/SUN domain fa 40.0 14 0.00048 36.1 2.6 29 450-478 155-185 (309)
88 3pfg_A N-methyltransferase; N, 39.9 29 0.00098 31.2 4.4 25 449-475 94-118 (263)
89 3dmg_A Probable ribosomal RNA 39.3 17 0.00059 36.4 3.2 56 450-511 282-340 (381)
90 1uir_A Polyamine aminopropyltr 38.8 4.9 0.00017 38.8 -0.8 66 450-515 134-199 (314)
91 2nxc_A L11 mtase, ribosomal pr 38.8 16 0.00053 33.8 2.6 74 450-535 169-243 (254)
92 2h1r_A Dimethyladenosine trans 38.7 13 0.00044 35.6 2.0 28 450-480 92-119 (299)
93 3m33_A Uncharacterized protein 38.2 21 0.00072 31.7 3.2 71 450-533 93-164 (226)
94 3jwh_A HEN1; methyltransferase 38.1 35 0.0012 29.7 4.6 27 450-477 86-112 (217)
95 3g5l_A Putative S-adenosylmeth 38.0 33 0.0011 30.5 4.5 26 450-476 92-117 (253)
96 2pt6_A Spermidine synthase; tr 37.1 7.1 0.00024 38.0 -0.0 60 450-514 172-233 (321)
97 1ws6_A Methyltransferase; stru 37.0 12 0.00043 30.7 1.5 57 449-512 89-148 (171)
98 4htf_A S-adenosylmethionine-de 36.8 29 0.00098 31.7 4.0 77 450-533 119-229 (285)
99 1ri5_A MRNA capping enzyme; me 36.7 27 0.00094 31.5 3.8 27 450-476 116-142 (298)
100 3mti_A RRNA methylase; SAM-dep 36.6 14 0.00047 31.4 1.7 31 449-479 71-101 (185)
101 1vlm_A SAM-dependent methyltra 35.1 46 0.0016 29.2 4.9 76 450-533 86-185 (219)
102 1yub_A Ermam, rRNA methyltrans 35.0 18 0.00063 33.0 2.4 30 450-480 77-106 (245)
103 2frx_A Hypothetical protein YE 33.9 10 0.00035 39.3 0.6 29 450-478 170-198 (479)
104 3jwg_A HEN1, methyltransferase 33.8 45 0.0015 29.0 4.6 26 450-476 86-111 (219)
105 3v97_A Ribosomal RNA large sub 33.7 21 0.00073 38.7 3.0 31 450-480 285-316 (703)
106 3id6_C Fibrillarin-like rRNA/T 33.2 41 0.0014 31.7 4.5 76 450-535 127-215 (232)
107 2fca_A TRNA (guanine-N(7)-)-me 32.8 21 0.00071 31.9 2.3 82 450-532 90-175 (213)
108 3ajd_A Putative methyltransfer 32.8 5.9 0.0002 37.0 -1.3 83 449-531 135-236 (274)
109 2yxl_A PH0851 protein, 450AA l 31.5 23 0.00077 35.9 2.6 31 449-479 311-342 (450)
110 2ex4_A Adrenal gland protein A 31.4 52 0.0018 29.2 4.7 76 450-534 130-223 (241)
111 3bzb_A Uncharacterized protein 31.4 53 0.0018 30.7 4.9 60 466-533 162-234 (281)
112 3e8s_A Putative SAM dependent 31.1 48 0.0017 28.3 4.3 79 449-535 95-208 (227)
113 2ar0_A M.ecoki, type I restric 30.0 16 0.00056 38.3 1.3 32 450-481 244-275 (541)
114 3e23_A Uncharacterized protein 29.9 38 0.0013 29.2 3.4 76 449-534 86-180 (211)
115 1wxx_A TT1595, hypothetical pr 29.1 9.4 0.00032 37.6 -0.7 65 450-514 259-328 (382)
116 3fut_A Dimethyladenosine trans 29.0 22 0.00076 34.2 2.0 32 450-481 93-124 (271)
117 2c7p_A Modification methylase 28.8 25 0.00085 34.6 2.3 81 453-535 57-152 (327)
118 3ou2_A SAM-dependent methyltra 28.7 78 0.0027 27.0 5.2 24 450-475 92-115 (218)
119 2as0_A Hypothetical protein PH 28.6 10 0.00034 37.4 -0.6 30 450-479 269-301 (396)
120 2okc_A Type I restriction enzy 28.0 35 0.0012 34.3 3.3 30 449-480 237-266 (445)
121 3lkd_A Type I restriction-modi 27.7 33 0.0011 36.3 3.2 67 450-516 278-363 (542)
122 3l8d_A Methyltransferase; stru 27.1 96 0.0033 27.1 5.5 78 449-534 99-198 (242)
123 2dpm_A M.dpnii 1, protein (ade 26.9 38 0.0013 32.9 3.2 76 450-527 169-254 (284)
124 2f8l_A Hypothetical protein LM 26.6 33 0.0011 33.0 2.6 77 450-528 186-278 (344)
125 2dul_A N(2),N(2)-dimethylguano 25.3 14 0.00048 37.1 -0.2 52 450-512 114-165 (378)
126 4dmg_A Putative uncharacterize 25.1 18 0.00061 36.6 0.5 65 451-515 264-330 (393)
127 1zq9_A Probable dimethyladenos 24.6 37 0.0013 32.2 2.5 28 450-480 79-106 (285)
128 3gru_A Dimethyladenosine trans 24.6 34 0.0012 33.4 2.3 31 449-480 97-127 (295)
129 3ntv_A MW1564 protein; rossman 23.9 20 0.00068 32.3 0.5 50 450-509 124-174 (232)
130 2ld4_A Anamorsin; methyltransf 23.5 44 0.0015 28.2 2.6 72 450-528 44-128 (176)
131 2kw5_A SLR1183 protein; struct 22.8 69 0.0024 27.3 3.7 72 449-533 77-168 (202)
132 3m6w_A RRNA methylase; rRNA me 22.3 13 0.00044 38.9 -1.2 29 450-478 153-181 (464)
133 2i62_A Nicotinamide N-methyltr 22.2 70 0.0024 28.3 3.7 79 451-535 138-238 (265)
134 1xxl_A YCGJ protein; structura 22.0 1.4E+02 0.0048 26.5 5.7 79 450-536 71-174 (239)
135 1sqg_A SUN protein, FMU protei 21.8 33 0.0011 34.4 1.7 30 450-479 297-327 (429)
136 4gyx_A Type III collagen fragm 21.8 56 0.0019 23.0 2.3 17 270-286 6-25 (31)
137 3khk_A Type I restriction-modi 21.3 45 0.0016 35.2 2.7 17 464-480 326-342 (544)
138 3s1s_A Restriction endonucleas 21.2 38 0.0013 38.7 2.2 66 451-516 383-470 (878)
139 3ccf_A Cyclopropane-fatty-acyl 20.7 1E+02 0.0034 28.1 4.5 28 449-478 101-128 (279)
140 2qy6_A UPF0209 protein YFCK; s 20.3 57 0.002 31.0 2.9 74 452-532 154-231 (257)
No 1
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=97.42 E-value=8.4e-05 Score=72.60 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=61.3
Q ss_pred CCceeeccCCc-CCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCC------ccc-cCCCcEEEEecCCc------
Q 009324 449 EPQWINCDIRN-FRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLN------VPA-LQTDGLIFLWVTGR------ 514 (537)
Q Consensus 449 PpQwIncDVR~-fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLP------V~~-LqddglLFLWVTnr------ 514 (537)
....|+.|.+. +..-.-++||+|++|||+.......|+.++.++....- +.. |.++|.+|+|+.+.
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~ 93 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP 93 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCc
Confidence 34678888765 33222368999999999987655567766544432211 122 44899999998765
Q ss_pred -----chHHHHHHHhcCCcEEEEEEec
Q 009324 515 -----AMELGREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 515 -----~Le~grElL~aWGFry~t~Iv~ 536 (537)
.+....++++.+||.++..|||
T Consensus 94 ~~~~~~~~~i~~~~~~~Gf~~~~~iiW 120 (323)
T 1boo_A 94 ARSIYNFRVLIRMIDEVGFFLAEDFYW 120 (323)
T ss_dssp EECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccchHHHHHHHHHhCCCEEEEEEEE
Confidence 2455667789999999999999
No 2
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.13 E-value=0.00018 Score=67.76 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=53.8
Q ss_pred ceeeccCCcC-CCCCCCCccEEEECCCccccccCCCCCC-CHHHH-------hcCCccccCCCcEEEEecCCcchHHHHH
Q 009324 451 QWINCDIRNF-RMDILGQFGVIMADPPWDIHMELPYGTM-ADDEM-------RNLNVPALQTDGLIFLWVTGRAMELGRE 521 (537)
Q Consensus 451 QwIncDVR~f-D~siLGKFDVIlADPPWdi~m~l~Y~TM-SddEI-------kaLPV~~LqddglLFLWVTnr~Le~grE 521 (537)
+.|+.|...+ ..-..++||+|++|||+.... ..|+.+ +.++. ...=-.-|.++|.+|+|...........
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~-~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~~~~ 84 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSK-ADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQ 84 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCS-SGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHH
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCc-ccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHHHHHHH
Confidence 4566665432 111135899999999997641 224444 22221 1111123558999999986555555566
Q ss_pred HHhcCCcEEEEEEec
Q 009324 522 WYMFLVMSIIIIIVH 536 (537)
Q Consensus 522 lL~aWGFry~t~Iv~ 536 (537)
++..+||.++..|||
T Consensus 85 ~~~~~gf~~~~~iiW 99 (260)
T 1g60_A 85 YLVSKGMIFQNWITW 99 (260)
T ss_dssp HHHHTTCEEEEEEEE
T ss_pred HHHhhccceeEEEEE
Confidence 888999999999999
No 3
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.41 E-value=0.0017 Score=62.16 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=53.7
Q ss_pred ccCCCceeeccCCcC-CCCCCCCccEEEECCCccccccCCCCCCC---------------HHHHhcCCccc-cCCCcEEE
Q 009324 446 ELGEPQWINCDIRNF-RMDILGQFGVIMADPPWDIHMELPYGTMA---------------DDEMRNLNVPA-LQTDGLIF 508 (537)
Q Consensus 446 ~l~PpQwIncDVR~f-D~siLGKFDVIlADPPWdi~m~l~Y~TMS---------------ddEIkaLPV~~-LqddglLF 508 (537)
.++.-.+++.|.+.+ ..-.-++||+|++|||+.... .|.... ..++.. .+.. |.++|.+|
T Consensus 18 ~~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~--~y~~~~~~~~~~~~~~~~l~~l~~~~~-~~~rvLk~~G~l~ 94 (297)
T 2zig_A 18 SFGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLK--RYEDTPGQLGHIEDYEAFLDELDRVWR-EVFRLLVPGGRLV 94 (297)
T ss_dssp ---CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC---------CCHHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEE
T ss_pred cccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCcc--ccCCChhhhcccccHHHHHHHHHHHHH-HHHHHcCCCcEEE
Confidence 345567899998873 221236899999999996431 232111 011211 1222 44899999
Q ss_pred EecCCcc-------------h-HHHHHHHhcCCcEEEEEEec
Q 009324 509 LWVTGRA-------------M-ELGREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 509 LWVTnr~-------------L-e~grElL~aWGFry~t~Iv~ 536 (537)
+++.+.. + +...++++.+||.+...|||
T Consensus 95 i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW 136 (297)
T 2zig_A 95 IVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIW 136 (297)
T ss_dssp EEECCEEEECC----EEEECHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEECCCccccccCCcccccccHHHHHHHHHHcCCeeeccEEE
Confidence 9987532 1 34557889999999999999
No 4
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=96.37 E-value=0.00095 Score=65.80 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=54.9
Q ss_pred cee-eccCCcC-CCCCCCCccEEEECCCcccccc-----CCCCCCCHHHHhcCCccccCCCcEEEEecCCcch-------
Q 009324 451 QWI-NCDIRNF-RMDILGQFGVIMADPPWDIHME-----LPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM------- 516 (537)
Q Consensus 451 QwI-ncDVR~f-D~siLGKFDVIlADPPWdi~m~-----l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L------- 516 (537)
+.+ +.|.+.+ ..-.-++||+|++|||+..... ..|-.+-.+-|..+ -.-|.++|++|+|+.....
T Consensus 40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~-~rvLk~~G~i~i~~~~~~~~~~~~~~ 118 (319)
T 1eg2_A 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEA-ERVLSPTGSIAIFGGLQYQGEAGSGD 118 (319)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHH-HHHEEEEEEEEEEECSCCCCCTTBCC
T ss_pred eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHH-HHHcCCCeEEEEEcCccccccccccc
Confidence 345 8887653 2212358999999999976411 11211222222221 1224589999999987655
Q ss_pred -HHHHHHHhcCC-cEEEEEEec
Q 009324 517 -ELGREWYMFLV-MSIIIIIVH 536 (537)
Q Consensus 517 -e~grElL~aWG-Fry~t~Iv~ 536 (537)
....+.+..+| |.++..|||
T Consensus 119 l~~l~~~i~~~G~~~~~~~IIW 140 (319)
T 1eg2_A 119 LISIISHMRQNSKMLLANLIIW 140 (319)
T ss_dssp HHHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHHHHhCcccceeEEEEEE
Confidence 66677788889 999999999
No 5
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=95.68 E-value=0.0058 Score=56.31 Aligned_cols=84 Identities=10% Similarity=0.003 Sum_probs=55.1
Q ss_pred CceeeccCCcCCCCC-CCCccEEEECCCccccc-------------cCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc
Q 009324 450 PQWINCDIRNFRMDI-LGQFGVIMADPPWDIHM-------------ELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA 515 (537)
Q Consensus 450 pQwIncDVR~fD~si-LGKFDVIlADPPWdi~m-------------~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~ 515 (537)
.+++++|++.+.... .++||+|++||||.... ..+....+.+++.+-=..-|.++|.+++-.....
T Consensus 101 v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 180 (259)
T 3lpm_A 101 IEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER 180 (259)
T ss_dssp EEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT
T ss_pred EEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH
Confidence 578999999876433 47999999999985431 0122222334444333344558899888666777
Q ss_pred hHHHHHHHhcCCcEEEEE
Q 009324 516 MELGREWYMFLVMSIIII 533 (537)
Q Consensus 516 Le~grElL~aWGFry~t~ 533 (537)
+....+.++++||..+..
T Consensus 181 ~~~~~~~l~~~~~~~~~~ 198 (259)
T 3lpm_A 181 LLDIIDIMRKYRLEPKRI 198 (259)
T ss_dssp HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 888889999999988754
No 6
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=94.64 E-value=0.042 Score=48.76 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=51.6
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCcccccc-C-----------CCCCCCHHHHhcCCccccCCCcEEEEecCCc--
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHME-L-----------PYGTMADDEMRNLNVPALQTDGLIFLWVTGR-- 514 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~-l-----------~Y~TMSddEIkaLPV~~LqddglLFLWVTnr-- 514 (537)
...|+++|++.+.--..++||+|++||||..... . .++.-...++.+-=..-|.++|.+++.+...
T Consensus 105 ~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 184 (230)
T 3evz_A 105 NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK 184 (230)
T ss_dssp CCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH
T ss_pred CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh
Confidence 4688999987554323479999999999854321 0 0111001233322233355889998876543
Q ss_pred chHHHHHHHhcCCcEEEEE
Q 009324 515 AMELGREWYMFLVMSIIII 533 (537)
Q Consensus 515 ~Le~grElL~aWGFry~t~ 533 (537)
..+...+.++..||++...
T Consensus 185 ~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 185 LLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCceEEE
Confidence 3567788999999977653
No 7
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=93.32 E-value=0.049 Score=46.75 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=49.5
Q ss_pred CCceeeccCCcCCCCC----CCCccEEEECCCccccccCC--------CC-CCCH----------HHHhcCCccccCCCc
Q 009324 449 EPQWINCDIRNFRMDI----LGQFGVIMADPPWDIHMELP--------YG-TMAD----------DEMRNLNVPALQTDG 505 (537)
Q Consensus 449 PpQwIncDVR~fD~si----LGKFDVIlADPPWdi~m~l~--------Y~-TMSd----------dEIkaLPV~~Lqddg 505 (537)
..+|+++|+.. .+.. .++||+|++||||......+ |. .... .++.+-=..-|.++|
T Consensus 80 ~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 158 (215)
T 4dzr_A 80 VVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGR 158 (215)
T ss_dssp ---CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSS
T ss_pred ceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCC
Confidence 35788888876 3322 37999999999985432111 10 0000 445454445567999
Q ss_pred E-EEEecCCcchHHHHHHHh--cCCcEEEE
Q 009324 506 L-IFLWVTGRAMELGREWYM--FLVMSIII 532 (537)
Q Consensus 506 l-LFLWVTnr~Le~grElL~--aWGFry~t 532 (537)
. +++-+.....+...++++ ..||..+.
T Consensus 159 ~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 159 AGVFLEVGHNQADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp EEEEEECTTSCHHHHHHHTGGGGGGTEECC
T ss_pred eEEEEEECCccHHHHHHHHHHhhcCCceEE
Confidence 9 666666666778888999 78886543
No 8
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=93.06 E-value=0.14 Score=44.50 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=50.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccC--CCCCC----CHHHHhcCCccccCCCcEEEEecCC-cchHHHHHH
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMEL--PYGTM----ADDEMRNLNVPALQTDGLIFLWVTG-RAMELGREW 522 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l--~Y~TM----SddEIkaLPV~~LqddglLFLWVTn-r~Le~grEl 522 (537)
..|+++|+.. .+ ..++||+|+++|||...... ..+.. -..++. ..+ ++|.+++.+.. ...+..+++
T Consensus 63 ~~~~~~d~~~-~~-~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l-pgG~l~~~~~~~~~~~~l~~~ 135 (170)
T 3q87_B 63 GNLVRADLLC-SI-NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFV----DAV-TVGMLYLLVIEANRPKEVLAR 135 (170)
T ss_dssp SCEEECSTTT-TB-CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHH----HHC-CSSEEEEEEEGGGCHHHHHHH
T ss_pred CeEEECChhh-hc-ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHH----hhC-CCCEEEEEEecCCCHHHHHHH
Confidence 5788999876 22 22799999999998653221 11111 112222 122 78988887643 456778889
Q ss_pred HhcCCcEEEEEE
Q 009324 523 YMFLVMSIIIII 534 (537)
Q Consensus 523 L~aWGFry~t~I 534 (537)
++..||+.....
T Consensus 136 l~~~gf~~~~~~ 147 (170)
T 3q87_B 136 LEERGYGTRILK 147 (170)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCcEEEEE
Confidence 999999887654
No 9
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=92.67 E-value=0.13 Score=47.94 Aligned_cols=81 Identities=7% Similarity=-0.036 Sum_probs=48.2
Q ss_pred CceeeccCCcCCC------CCCCCccEEEECCCccccc-----------cCCCCCCCHHHHhcCCccccCCCcEEEEecC
Q 009324 450 PQWINCDIRNFRM------DILGQFGVIMADPPWDIHM-----------ELPYGTMADDEMRNLNVPALQTDGLIFLWVT 512 (537)
Q Consensus 450 pQwIncDVR~fD~------siLGKFDVIlADPPWdi~m-----------~l~Y~TMSddEIkaLPV~~LqddglLFLWVT 512 (537)
..+++.|+..+.. -..++||+|++||||.... ..+......+++...=..-|.++|.+++-..
T Consensus 92 v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 92 IEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp EEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 4689999987721 1246899999999996541 1122233345554333334558898888666
Q ss_pred CcchHHHHHHHhcCCcEEE
Q 009324 513 GRAMELGREWYMFLVMSII 531 (537)
Q Consensus 513 nr~Le~grElL~aWGFry~ 531 (537)
...++...+.|+.- |..+
T Consensus 172 ~~~~~~~~~~l~~~-~~~~ 189 (260)
T 2ozv_A 172 PQSVAEIIAACGSR-FGGL 189 (260)
T ss_dssp GGGHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHHHhc-CCce
Confidence 66677777888763 6544
No 10
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=91.80 E-value=0.18 Score=43.90 Aligned_cols=72 Identities=6% Similarity=0.118 Sum_probs=43.5
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEec--CCcchHHHHHHHhcC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWV--TGRAMELGREWYMFL 526 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWV--Tnr~Le~grElL~aW 526 (537)
...++++|+..++ ++||+|++||||..... .....-+..+ ..+. |.+|+-+ .....+...+.++..
T Consensus 98 ~~~~~~~d~~~~~----~~~D~v~~~~p~~~~~~----~~~~~~l~~~--~~~l--~~~~~~~~~~~~~~~~~~~~l~~~ 165 (207)
T 1wy7_A 98 KFKVFIGDVSEFN----SRVDIVIMNPPFGSQRK----HADRPFLLKA--FEIS--DVVYSIHLAKPEVRRFIEKFSWEH 165 (207)
T ss_dssp SEEEEESCGGGCC----CCCSEEEECCCCSSSST----TTTHHHHHHH--HHHC--SEEEEEEECCHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHcC----CCCCEEEEcCCCccccC----CchHHHHHHH--HHhc--CcEEEEEeCCcCCHHHHHHHHHHC
Confidence 3578899998764 58999999999876432 1111111111 0111 4455544 333456677889999
Q ss_pred CcEEEE
Q 009324 527 VMSIII 532 (537)
Q Consensus 527 GFry~t 532 (537)
||++..
T Consensus 166 g~~~~~ 171 (207)
T 1wy7_A 166 GFVVTH 171 (207)
T ss_dssp TEEEEE
T ss_pred CCeEEE
Confidence 998754
No 11
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=91.41 E-value=0.11 Score=45.40 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=42.4
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVM 528 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGF 528 (537)
...|+++|+..++ ++||+|++||||.......... -..++.++ -|.+|+++.......-.++++.+|
T Consensus 96 ~~~~~~~d~~~~~----~~~D~v~~~~p~~~~~~~~~~~-~l~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~g- 162 (200)
T 1ne2_A 96 GVNFMVADVSEIS----GKYDTWIMNPPFGSVVKHSDRA-FIDKAFET-------SMWIYSIGNAKARDFLRREFSARG- 162 (200)
T ss_dssp TSEEEECCGGGCC----CCEEEEEECCCC-------CHH-HHHHHHHH-------EEEEEEEEEGGGHHHHHHHHHHHE-
T ss_pred CCEEEECcHHHCC----CCeeEEEECCCchhccCchhHH-HHHHHHHh-------cCcEEEEEcCchHHHHHHHHHHCC-
Confidence 3578999998764 7999999999997643210000 01222221 177888887666667777888888
Q ss_pred EE
Q 009324 529 SI 530 (537)
Q Consensus 529 ry 530 (537)
++
T Consensus 163 ~~ 164 (200)
T 1ne2_A 163 DV 164 (200)
T ss_dssp EE
T ss_pred CE
Confidence 44
No 12
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=90.14 E-value=0.46 Score=41.41 Aligned_cols=73 Identities=12% Similarity=-0.029 Sum_probs=50.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEec-CCcchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWV-TGRAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWV-Tnr~Le~grElL~aWGF 528 (537)
-.++++|+..+. .++||+|+++++... ..++.+-=...|.++|.+++-. .....+.-.++++..||
T Consensus 111 v~~~~~d~~~~~---~~~fD~i~~~~~~~~----------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf 177 (205)
T 3grz_A 111 IALQKTSLLADV---DGKFDLIVANILAEI----------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSF 177 (205)
T ss_dssp CEEEESSTTTTC---CSCEEEEEEESCHHH----------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTE
T ss_pred eEEEeccccccC---CCCceEEEECCcHHH----------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCC
Confidence 678888886642 379999999998753 1233332233455889888743 34456778889999999
Q ss_pred EEEEEEe
Q 009324 529 SIIIIIV 535 (537)
Q Consensus 529 ry~t~Iv 535 (537)
+.+....
T Consensus 178 ~~~~~~~ 184 (205)
T 3grz_A 178 QIDLKMR 184 (205)
T ss_dssp EEEEEEE
T ss_pred ceEEeec
Confidence 9987654
No 13
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=89.58 E-value=0.54 Score=46.23 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=48.2
Q ss_pred CCceeeccCCc-CCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCc-E-EEEecC-Ccch---HHHHH
Q 009324 449 EPQWINCDIRN-FRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDG-L-IFLWVT-GRAM---ELGRE 521 (537)
Q Consensus 449 PpQwIncDVR~-fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~Lqddg-l-LFLWVT-nr~L---e~grE 521 (537)
...|+.+|++. +.....++||+|++|||+... .+.++.+-=...|.++| + +|.... .... ....+
T Consensus 222 ~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~--------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~ 293 (373)
T 2qm3_A 222 DIEIFTFDLRKPLPDYALHKFDTFITDPPETLE--------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQK 293 (373)
T ss_dssp CEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH--------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHH
T ss_pred CEEEEEChhhhhchhhccCCccEEEECCCCchH--------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHH
Confidence 35789999987 543334689999999997543 12344333233455778 4 455444 1333 45567
Q ss_pred HHh-cCCcEEEEE
Q 009324 522 WYM-FLVMSIIII 533 (537)
Q Consensus 522 lL~-aWGFry~t~ 533 (537)
.+. .+||+....
T Consensus 294 ~l~~~~g~~~~~~ 306 (373)
T 2qm3_A 294 LLLNEFNVVITDI 306 (373)
T ss_dssp HHHHTSCCEEEEE
T ss_pred HHHHhcCcchhhh
Confidence 777 899987544
No 14
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=88.06 E-value=0.21 Score=48.34 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCC-HHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMA-DDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLV 527 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMS-ddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWG 527 (537)
..+|++.|++.+... .+.||+|++||||.......-.... ..++.+-=-..|.++|.+++++.++ +...++++ +|
T Consensus 255 ~i~~~~~D~~~~~~~-~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g 330 (354)
T 3tma_A 255 WIRFLRADARHLPRF-FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PG 330 (354)
T ss_dssp TCEEEECCGGGGGGT-CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TT
T ss_pred ceEEEeCChhhCccc-cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cC
Confidence 468999999987653 3569999999999664321100000 0111111112244789999887764 33556667 99
Q ss_pred cEEEEE
Q 009324 528 MSIIII 533 (537)
Q Consensus 528 Fry~t~ 533 (537)
|+....
T Consensus 331 ~~~~~~ 336 (354)
T 3tma_A 331 FALRHA 336 (354)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 987644
No 15
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=86.78 E-value=0.34 Score=45.63 Aligned_cols=70 Identities=13% Similarity=-0.070 Sum_probs=47.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC-------cchHHHHHH
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG-------RAMELGREW 522 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn-------r~Le~grEl 522 (537)
..|+++|++.+.. .++||+|++|||.... --.+++. ..|.++|++++.... ..++...+.
T Consensus 177 v~~~~~D~~~~~~--~~~fD~Vi~~~p~~~~-------~~l~~~~----~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~ 243 (278)
T 2frn_A 177 MSAYNMDNRDFPG--ENIADRILMGYVVRTH-------EFIPKAL----SIAKDGAIIHYHNTVPEKLMPREPFETFKRI 243 (278)
T ss_dssp EEEECSCTTTCCC--CSCEEEEEECCCSSGG-------GGHHHHH----HHEEEEEEEEEEEEEEGGGTTTTTHHHHHHH
T ss_pred EEEEECCHHHhcc--cCCccEEEECCchhHH-------HHHHHHH----HHCCCCeEEEEEEeeccccccccHHHHHHHH
Confidence 5689999988776 6799999999995431 1112222 234478887764443 345677889
Q ss_pred HhcCCcEEEE
Q 009324 523 YMFLVMSIII 532 (537)
Q Consensus 523 L~aWGFry~t 532 (537)
++.-||++..
T Consensus 244 ~~~~G~~~~~ 253 (278)
T 2frn_A 244 TKEYGYDVEK 253 (278)
T ss_dssp HHHTTCEEEE
T ss_pred HHHcCCeeEE
Confidence 9999998754
No 16
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=86.68 E-value=0.4 Score=44.51 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=50.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc-------CCC-CCCC----------HHHHhcCCccccCCCcEEEEec
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME-------LPY-GTMA----------DDEMRNLNVPALQTDGLIFLWV 511 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~-------l~Y-~TMS----------ddEIkaLPV~~LqddglLFLWV 511 (537)
..|+++|+... + ..++||+|+++||+..... .+| +... ...+..-=..-|.++|.+++-.
T Consensus 161 v~~~~~d~~~~-~-~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 161 IHILQSDWFSA-L-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp EEEECCSTTGG-G-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred eEEEEcchhhh-c-ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 57888888653 1 2468999999999854311 112 1111 1222221123345889998887
Q ss_pred CCcchHHHHHHHhcCCcEEE
Q 009324 512 TGRAMELGREWYMFLVMSII 531 (537)
Q Consensus 512 Tnr~Le~grElL~aWGFry~ 531 (537)
.....+...++|+..||+.+
T Consensus 239 ~~~~~~~~~~~l~~~Gf~~v 258 (276)
T 2b3t_A 239 GWQQGEAVRQAFILAGYHDV 258 (276)
T ss_dssp CSSCHHHHHHHHHHTTCTTC
T ss_pred CchHHHHHHHHHHHCCCcEE
Confidence 77777788889999999644
No 17
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=84.58 E-value=0.38 Score=46.88 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=42.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcC-Cc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFL-VM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aW-GF 528 (537)
.+|++.|++.+. ++||+|++|||.... --.+++ ...|.++|++++.......+...+.++.. ||
T Consensus 245 v~~~~~D~~~~~----~~fD~Vi~dpP~~~~-------~~l~~~----~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~~~ 309 (336)
T 2yx1_A 245 IIPILSDVREVD----VKGNRVIMNLPKFAH-------KFIDKA----LDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDC 309 (336)
T ss_dssp EEEEESCGGGCC----CCEEEEEECCTTTGG-------GGHHHH----HHHEEEEEEEEEEEEESSSHHHHHHHHHHSEE
T ss_pred EEEEECChHHhc----CCCcEEEECCcHhHH-------HHHHHH----HHHcCCCCEEEEEEeecCchHHHHHHHHhcCC
Confidence 578999998775 899999999996542 111121 22244788776654433366666666655 77
Q ss_pred EEE
Q 009324 529 SII 531 (537)
Q Consensus 529 ry~ 531 (537)
+..
T Consensus 310 ~i~ 312 (336)
T 2yx1_A 310 EVL 312 (336)
T ss_dssp EEE
T ss_pred cEE
Confidence 654
No 18
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=83.98 E-value=0.67 Score=41.46 Aligned_cols=71 Identities=6% Similarity=-0.049 Sum_probs=46.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc-chHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR-AMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr-~Le~grElL~aWGF 528 (537)
..++..|+..+++. .++||+|++|+|=. .--.+++. ..|.++|.+++.+... .+....+.|+..||
T Consensus 150 v~~~~~d~~~~~~~-~~~~D~v~~~~~~~--------~~~l~~~~----~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf 216 (258)
T 2pwy_A 150 VRFHLGKLEEAELE-EAAYDGVALDLMEP--------WKVLEKAA----LALKPDRFLVAYLPNITQVLELVRAAEAHPF 216 (258)
T ss_dssp EEEEESCGGGCCCC-TTCEEEEEEESSCG--------GGGHHHHH----HHEEEEEEEEEEESCHHHHHHHHHHHTTTTE
T ss_pred EEEEECchhhcCCC-CCCcCEEEECCcCH--------HHHHHHHH----HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 46788888876432 26899999987611 01122222 2244789888887654 56677888999999
Q ss_pred EEEEE
Q 009324 529 SIIII 533 (537)
Q Consensus 529 ry~t~ 533 (537)
+....
T Consensus 217 ~~~~~ 221 (258)
T 2pwy_A 217 RLERV 221 (258)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 86644
No 19
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=83.20 E-value=0.64 Score=43.20 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=47.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc-chHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR-AMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr-~Le~grElL~aWGF 528 (537)
..++.+|+.. +...++||+|++|+|=. .--.+++.. .|.++|.+++.+.+. ..+...+.|+..||
T Consensus 164 v~~~~~d~~~--~~~~~~fD~Vi~~~~~~--------~~~l~~~~~----~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf 229 (275)
T 1yb2_A 164 VRTSRSDIAD--FISDQMYDAVIADIPDP--------WNHVQKIAS----MMKPGSVATFYLPNFDQSEKTVLSLSASGM 229 (275)
T ss_dssp EEEECSCTTT--CCCSCCEEEEEECCSCG--------GGSHHHHHH----TEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred EEEEECchhc--cCcCCCccEEEEcCcCH--------HHHHHHHHH----HcCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 4678888876 22236899999988611 111233322 245889999888765 45677788899999
Q ss_pred EEEEEE
Q 009324 529 SIIIII 534 (537)
Q Consensus 529 ry~t~I 534 (537)
+.+..+
T Consensus 230 ~~~~~~ 235 (275)
T 1yb2_A 230 HHLETV 235 (275)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 877654
No 20
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=82.05 E-value=0.22 Score=53.95 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=49.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCC----HHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMA----DDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMF 525 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMS----ddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~a 525 (537)
.+|++.|+..+--...++||+|++|||.-......-.... ..+|...=..-|.++|+|++=+..+......+.++.
T Consensus 592 v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~ 671 (703)
T 3v97_A 592 HRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAK 671 (703)
T ss_dssp EEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHH
T ss_pred eEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHH
Confidence 6789999876421123689999999998543221111121 122222223345588998866655555556788899
Q ss_pred CCcEEEE
Q 009324 526 LVMSIII 532 (537)
Q Consensus 526 WGFry~t 532 (537)
.||++..
T Consensus 672 ~g~~~~~ 678 (703)
T 3v97_A 672 LGLKAQE 678 (703)
T ss_dssp TTEEEEE
T ss_pred cCCceee
Confidence 9998654
No 21
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=79.39 E-value=1.2 Score=41.16 Aligned_cols=71 Identities=14% Similarity=-0.057 Sum_probs=46.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC-cchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG-RAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn-r~Le~grElL~aWGF 528 (537)
..+++.|+..+ + ..++||+|++|||-.. --.+++. ..|.++|.+++.+.. ..++...+.|+..||
T Consensus 166 v~~~~~d~~~~-~-~~~~~D~V~~~~~~~~--------~~l~~~~----~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf 231 (277)
T 1o54_A 166 VTIKVRDISEG-F-DEKDVDALFLDVPDPW--------NYIDKCW----EALKGGGRFATVCPTTNQVQETLKKLQELPF 231 (277)
T ss_dssp EEEECCCGGGC-C-SCCSEEEEEECCSCGG--------GTHHHHH----HHEEEEEEEEEEESSHHHHHHHHHHHHHSSE
T ss_pred EEEEECCHHHc-c-cCCccCEEEECCcCHH--------HHHHHHH----HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 46778888765 2 2368999999987221 1123332 224588988887764 356777888888999
Q ss_pred EEEEEE
Q 009324 529 SIIIII 534 (537)
Q Consensus 529 ry~t~I 534 (537)
..+..+
T Consensus 232 ~~~~~~ 237 (277)
T 1o54_A 232 IRIEVW 237 (277)
T ss_dssp EEEEEE
T ss_pred ceeEEE
Confidence 866543
No 22
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=79.03 E-value=1.2 Score=37.19 Aligned_cols=69 Identities=7% Similarity=-0.127 Sum_probs=45.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEec-CCcchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWV-TGRAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWV-Tnr~Le~grElL~aWGF 528 (537)
..++++|+.. .+. .++||+|+++++ .. + .--..++.++ ++|.+++-. ....+....+.|+..||
T Consensus 85 ~~~~~~d~~~-~~~-~~~~D~i~~~~~-~~-----~-~~~l~~~~~~------~gG~l~~~~~~~~~~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 85 CQIIKGRAED-VLD-KLEFNKAFIGGT-KN-----I-EKIIEILDKK------KINHIVANTIVLENAAKIINEFESRGY 149 (183)
T ss_dssp EEEEESCHHH-HGG-GCCCSEEEECSC-SC-----H-HHHHHHHHHT------TCCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEECCccc-ccc-CCCCcEEEECCc-cc-----H-HHHHHHHhhC------CCCEEEEEecccccHHHHHHHHHHcCC
Confidence 5788888876 332 278999999999 10 0 1112333333 788776655 44556778899999998
Q ss_pred EEEEE
Q 009324 529 SIIII 533 (537)
Q Consensus 529 ry~t~ 533 (537)
++...
T Consensus 150 ~~~~~ 154 (183)
T 2yxd_A 150 NVDAV 154 (183)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77643
No 23
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=76.43 E-value=1.2 Score=41.91 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=41.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc------chHHHHHHH
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR------AMELGREWY 523 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr------~Le~grElL 523 (537)
..|++.|++.+.. .++||+|++|||... .++...=+..|.++|++++.+... .+....+.+
T Consensus 171 ~~~~~~d~~~~~~--~~~~D~Vi~d~p~~~-----------~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~ 237 (272)
T 3a27_A 171 VIPILADNRDVEL--KDVADRVIMGYVHKT-----------HKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFY 237 (272)
T ss_dssp EEEEESCGGGCCC--TTCEEEEEECCCSSG-----------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHH
T ss_pred EEEEECChHHcCc--cCCceEEEECCcccH-----------HHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHH
Confidence 4699999998732 678999999999622 111111123345889988877643 344445544
Q ss_pred h-cCCcEE
Q 009324 524 M-FLVMSI 530 (537)
Q Consensus 524 ~-aWGFry 530 (537)
+ .-||++
T Consensus 238 ~~~~~~~~ 245 (272)
T 3a27_A 238 AEKNGYKL 245 (272)
T ss_dssp HHHTTEEE
T ss_pred HHHhCCee
Confidence 4 345554
No 24
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=73.51 E-value=3.1 Score=40.74 Aligned_cols=83 Identities=8% Similarity=-0.041 Sum_probs=47.6
Q ss_pred Cce-eeccCCcCCCCCCCCccEEEECCC--ccccccC-CCCCCCH-HHHhcCCccccCCCcEEEEec-CCcchHHHHHHH
Q 009324 450 PQW-INCDIRNFRMDILGQFGVIMADPP--WDIHMEL-PYGTMAD-DEMRNLNVPALQTDGLIFLWV-TGRAMELGREWY 523 (537)
Q Consensus 450 pQw-IncDVR~fD~siLGKFDVIlADPP--Wdi~m~l-~Y~TMSd-dEIkaLPV~~LqddglLFLWV-Tnr~Le~grElL 523 (537)
..| ++.|++.+.+. ++||+|++|++ |.-+... +...... +++.+.=..-|.++|.+++-+ .........++|
T Consensus 107 v~~~i~gD~~~~~~~--~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l 184 (290)
T 2xyq_A 107 ADSTLIGDCATVHTA--NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM 184 (290)
T ss_dssp SSEEEESCGGGCCCS--SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH
T ss_pred CEEEEECccccCCcc--CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHH
Confidence 467 89999887653 78999999954 4221111 2222221 122222122355788777633 233446777899
Q ss_pred hcCCcEEEEEE
Q 009324 524 MFLVMSIIIII 534 (537)
Q Consensus 524 ~aWGFry~t~I 534 (537)
+..||..+..+
T Consensus 185 ~~~GF~~v~~~ 195 (290)
T 2xyq_A 185 GHFSWWTAFVT 195 (290)
T ss_dssp TTEEEEEEEEE
T ss_pred HHcCCcEEEEE
Confidence 99999865543
No 25
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=73.15 E-value=0.76 Score=44.14 Aligned_cols=80 Identities=10% Similarity=-0.045 Sum_probs=47.3
Q ss_pred CceeeccCCcCCCC-CCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc-----hHHHHHHH
Q 009324 450 PQWINCDIRNFRMD-ILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA-----MELGREWY 523 (537)
Q Consensus 450 pQwIncDVR~fD~s-iLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~-----Le~grElL 523 (537)
..++..|.+.+... ..++||+|++|++-.... .....+ .++.+.=-..|.++|+++++..++. .....+.|
T Consensus 151 v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~--~~~l~~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 227 (304)
T 3bwc_A 151 ATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGP--ASKLFG-EAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFI 227 (304)
T ss_dssp EEEEESCHHHHHHSSCTTCEEEEEEECC-----------CC-HHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHH
T ss_pred EEEEECcHHHHHHhccCCceeEEEECCCCcccc--chhhhH-HHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH
Confidence 46788998877554 457999999998753311 001111 2222221233568999999987753 34456677
Q ss_pred hcCCcEEEE
Q 009324 524 MFLVMSIII 532 (537)
Q Consensus 524 ~aWGFry~t 532 (537)
++-||..+.
T Consensus 228 ~~~GF~~v~ 236 (304)
T 3bwc_A 228 RETGFASVQ 236 (304)
T ss_dssp HHHTCSEEE
T ss_pred HhCCCCcEE
Confidence 777886554
No 26
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=72.63 E-value=2.2 Score=42.08 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=41.9
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHH-hcC--CccccCCCcEEEEecCCcchHHHHHHHhc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEM-RNL--NVPALQTDGLIFLWVTGRAMELGREWYMF 525 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEI-kaL--PV~~LqddglLFLWVTnr~Le~grElL~a 525 (537)
...|+++|++.+.+. .++||+|++||||.......- ...++ ..+ -+..+-..+++|+ +++ .+...+.+..
T Consensus 269 ~i~~~~~D~~~~~~~-~~~fD~Ii~npPyg~r~~~~~---~~~~ly~~~~~~l~r~l~g~~~~i-~~~--~~~~~~~~~~ 341 (373)
T 3tm4_A 269 KIKFIQGDATQLSQY-VDSVDFAISNLPYGLKIGKKS---MIPDLYMKFFNELAKVLEKRGVFI-TTE--KKAIEEAIAE 341 (373)
T ss_dssp GCEEEECCGGGGGGT-CSCEEEEEEECCCC------C---CHHHHHHHHHHHHHHHEEEEEEEE-ESC--HHHHHHHHHH
T ss_pred ceEEEECChhhCCcc-cCCcCEEEECCCCCcccCcch---hHHHHHHHHHHHHHHHcCCeEEEE-ECC--HHHHHHHHHH
Confidence 358899999987743 378999999999976532110 11111 000 0111112233333 332 3455568889
Q ss_pred CCcEEEEE
Q 009324 526 LVMSIIII 533 (537)
Q Consensus 526 WGFry~t~ 533 (537)
.||+....
T Consensus 342 ~G~~~~~~ 349 (373)
T 3tm4_A 342 NGFEIIHH 349 (373)
T ss_dssp TTEEEEEE
T ss_pred cCCEEEEE
Confidence 99998654
No 27
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=72.54 E-value=1.4 Score=36.79 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=44.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC-cchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG-RAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn-r~Le~grElL~aWGF 528 (537)
..++++|+.. .+..+++||+|++++++.. ..++.+-=...|.++|.+++-..+ .......+.++..||
T Consensus 84 ~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 84 VTLMEGDAPE-ALCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF 152 (192)
T ss_dssp EEEEESCHHH-HHTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred eEEEecCHHH-hcccCCCCCEEEECCchHH----------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC
Confidence 4677888766 3334469999999987631 122222112334588888776544 345677789999999
Q ss_pred EEE
Q 009324 529 SII 531 (537)
Q Consensus 529 ry~ 531 (537)
++.
T Consensus 153 ~~~ 155 (192)
T 1l3i_A 153 DVN 155 (192)
T ss_dssp CCE
T ss_pred ceE
Confidence 544
No 28
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=71.54 E-value=1.6 Score=36.60 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=48.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcC---CccccCCCcEEEEecCCc---chHHHHHHH
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNL---NVPALQTDGLIFLWVTGR---AMELGREWY 523 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaL---PV~~LqddglLFLWVTnr---~Le~grElL 523 (537)
..++++|+..+++. .++||+|++.|+.-.+ ++.++...+ =...|.++|.+++-+.+. ..+.-.+++
T Consensus 91 ~~~~~~d~~~~~~~-~~~~D~i~~~~~~~~~-------~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l 162 (195)
T 3cgg_A 91 ARWVVGDLSVDQIS-ETDFDLIVSAGNVMGF-------LAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVA 162 (195)
T ss_dssp SEEEECCTTTSCCC-CCCEEEEEECCCCGGG-------SCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHH
T ss_pred CcEEEcccccCCCC-CCceeEEEECCcHHhh-------cChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHH
Confidence 57889999887653 4689999998654322 222221111 112244788887765443 356778899
Q ss_pred hcCCcEEEEE
Q 009324 524 MFLVMSIIII 533 (537)
Q Consensus 524 ~aWGFry~t~ 533 (537)
+.-||+....
T Consensus 163 ~~~Gf~~~~~ 172 (195)
T 3cgg_A 163 ERVGLELENA 172 (195)
T ss_dssp HHHTEEEEEE
T ss_pred HHcCCEEeee
Confidence 9999998754
No 29
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=70.62 E-value=2.1 Score=41.33 Aligned_cols=83 Identities=8% Similarity=-0.005 Sum_probs=46.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccc-----cCCCCCCCHHHHhcC----------CccccCCCcEEEE-ecC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHM-----ELPYGTMADDEMRNL----------NVPALQTDGLIFL-WVT 512 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m-----~l~Y~TMSddEIkaL----------PV~~LqddglLFL-WVT 512 (537)
...+++.|.+.+.. ..++||+|++|||..-.- ...+-.++.+++..+ =..-|.++|.+++ =|+
T Consensus 170 ~v~~~~~D~~~~~~-~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 170 NVILFHSSSLHIGE-LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp SEEEESSCGGGGGG-GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEECChhhccc-ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 35788899988765 346899999999964321 001112344433221 1222346776644 333
Q ss_pred Ccc---hHHHHHHHhcCCcEEEE
Q 009324 513 GRA---MELGREWYMFLVMSIII 532 (537)
Q Consensus 513 nr~---Le~grElL~aWGFry~t 532 (537)
-.. -+...++++..||+.+.
T Consensus 249 ~~~~Ene~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 249 LEPEENEFVIQWALDNFDVELLP 271 (315)
T ss_dssp CCGGGTHHHHHHHHHHSSEEEEC
T ss_pred CChHHhHHHHHHHHhcCCCEEec
Confidence 211 23456688888988753
No 30
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=69.76 E-value=1.8 Score=38.78 Aligned_cols=75 Identities=12% Similarity=-0.012 Sum_probs=43.8
Q ss_pred CceeeccCCcCC-CC-CCCCccEEEECCCccccccCCCCCCCHH-HHhcCCccccCCCcEEEEecCCcc----------h
Q 009324 450 PQWINCDIRNFR-MD-ILGQFGVIMADPPWDIHMELPYGTMADD-EMRNLNVPALQTDGLIFLWVTGRA----------M 516 (537)
Q Consensus 450 pQwIncDVR~fD-~s-iLGKFDVIlADPPWdi~m~l~Y~TMSdd-EIkaLPV~~LqddglLFLWVTnr~----------L 516 (537)
..|+.+|+..++ +. ..++||+|++|+|. .... .+..-=...|.++|.+++-+.... +
T Consensus 128 v~~~~~d~~~~~~~~~~~~~~D~V~~~~~~----------~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 197 (233)
T 2ipx_A 128 IIPVIEDARHPHKYRMLIAMVDVIFADVAQ----------PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVF 197 (233)
T ss_dssp EEEECSCTTCGGGGGGGCCCEEEEEECCCC----------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHH
T ss_pred eEEEEcccCChhhhcccCCcEEEEEEcCCC----------ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHH
Confidence 468889988754 22 24689999999981 1111 111101122448888877433211 2
Q ss_pred HHHHHHHhcCCcEEEEEE
Q 009324 517 ELGREWYMFLVMSIIIII 534 (537)
Q Consensus 517 e~grElL~aWGFry~t~I 534 (537)
....++|++-||+.+..+
T Consensus 198 ~~~~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 198 ASEVKKMQQENMKPQEQL 215 (233)
T ss_dssp HHHHHTTGGGTEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEE
Confidence 222578888899988744
No 31
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=68.83 E-value=9.3 Score=33.18 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=45.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC-cchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG-RAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn-r~Le~grElL~aWGF 528 (537)
-.+++.|+...- ..+++||+|+++++.. ...++.+-=...|.++|.+++-... ...+...+.++..||
T Consensus 92 v~~~~~d~~~~~-~~~~~~D~i~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 92 VTLVEAFAPEGL-DDLPDPDRVFIGGSGG----------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp EEEEECCTTTTC-TTSCCCSEEEESCCTT----------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred EEEEeCChhhhh-hcCCCCCEEEECCCCc----------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 467777775432 2337899999998653 2333333333346688988887544 456778889999998
Q ss_pred EE
Q 009324 529 SI 530 (537)
Q Consensus 529 ry 530 (537)
.+
T Consensus 161 ~~ 162 (204)
T 3e05_A 161 MV 162 (204)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 32
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=67.39 E-value=6.5 Score=36.80 Aligned_cols=76 Identities=9% Similarity=-0.036 Sum_probs=49.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHH---HhcCCccccCCCcEEEEecCC-------------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDE---MRNLNVPALQTDGLIFLWVTG------------- 513 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddE---IkaLPV~~LqddglLFLWVTn------------- 513 (537)
..|+++|+..+.+. ++||+|++..+...- -+.+. +.+-=...|.++|.+++-...
T Consensus 172 v~~~~~d~~~~~~~--~~fD~v~~~~~~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~ 242 (305)
T 3ocj_A 172 ITLHRQDAWKLDTR--EGYDLLTSNGLNIYE-------PDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDM 242 (305)
T ss_dssp EEEEECCGGGCCCC--SCEEEEECCSSGGGC-------CCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCG
T ss_pred eEEEECchhcCCcc--CCeEEEEECChhhhc-------CCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccccccccee
Confidence 57899999998876 999999997766541 11222 111111224477877754311
Q ss_pred --------------------------cchHHHHHHHhcCCcEEEEEE
Q 009324 514 --------------------------RAMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 514 --------------------------r~Le~grElL~aWGFry~t~I 534 (537)
...+.-.++|+.-||+.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 243 QAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFE 289 (305)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred eccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEE
Confidence 235667789999999988654
No 33
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=67.04 E-value=4.1 Score=40.13 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=45.8
Q ss_pred ceeeccCCcCCCCCCC--CccEEEECCCccccccCC--------CCCCCHHHHhcCCccccC--CCcEEEEecC----Cc
Q 009324 451 QWINCDIRNFRMDILG--QFGVIMADPPWDIHMELP--------YGTMADDEMRNLNVPALQ--TDGLIFLWVT----GR 514 (537)
Q Consensus 451 QwIncDVR~fD~siLG--KFDVIlADPPWdi~m~l~--------Y~TMSddEIkaLPV~~Lq--ddglLFLWVT----nr 514 (537)
.+++.||+.++...+. ++|+|+++||.+-..... -+++-.+=++- |..+. +.-|++==|. ..
T Consensus 50 ~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~--i~~~~~~P~~~~~ENV~~l~~~~ 127 (343)
T 1g55_A 50 QLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDI--LPRLQKLPKYILLENVKGFEVSS 127 (343)
T ss_dssp CEECSCGGGCCHHHHHHHCCSEEEECCC------------------CHHHHHHHH--GGGCSSCCSEEEEEEETTGGGSH
T ss_pred ccccCCHHHccHhHcCcCCcCEEEEcCCCcchhhcCCcCCccCccchHHHHHHHH--HHHhcCCCCEEEEeCCccccCHH
Confidence 4789999998754332 799999999976543111 11111111111 23444 5544441133 34
Q ss_pred chHHHHHHHhcCCcEEEEEEe
Q 009324 515 AMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 515 ~Le~grElL~aWGFry~t~Iv 535 (537)
.+..-.+.|+..||.+...++
T Consensus 128 ~~~~i~~~l~~~GY~v~~~vl 148 (343)
T 1g55_A 128 TRDLLIQTIENCGFQYQEFLL 148 (343)
T ss_dssp HHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHCCCeeEEEEE
Confidence 566778889999999887665
No 34
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=66.86 E-value=1.9 Score=38.80 Aligned_cols=69 Identities=12% Similarity=-0.071 Sum_probs=46.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc-chHHHHHHHhcCC-
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR-AMELGREWYMFLV- 527 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr-~Le~grElL~aWG- 527 (537)
..++..|+... -..++||+|++|||-.. --.+++. ..|.++|.+++++... ..+...+.|+..|
T Consensus 147 v~~~~~d~~~~--~~~~~~D~v~~~~~~~~--------~~l~~~~----~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~ 212 (255)
T 3mb5_A 147 VTIKLKDIYEG--IEEENVDHVILDLPQPE--------RVVEHAA----KALKPGGFFVAYTPCSNQVMRLHEKLREFKD 212 (255)
T ss_dssp EEEECSCGGGC--CCCCSEEEEEECSSCGG--------GGHHHHH----HHEEEEEEEEEEESSHHHHHHHHHHHHHTGG
T ss_pred eEEEECchhhc--cCCCCcCEEEECCCCHH--------HHHHHHH----HHcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 57888888743 23467999999998321 1123332 2345889999988653 4667788999999
Q ss_pred -cEEEE
Q 009324 528 -MSIII 532 (537)
Q Consensus 528 -Fry~t 532 (537)
|..+.
T Consensus 213 ~f~~~~ 218 (255)
T 3mb5_A 213 YFMKPR 218 (255)
T ss_dssp GBSCCE
T ss_pred CccccE
Confidence 75443
No 35
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=66.65 E-value=1.2 Score=44.00 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=44.5
Q ss_pred CceeeccCCcCCCCC---CCCccEEEECCCccccccCCC-CCC-CHHHHhcCCccccCCCcEEEEecCCcch------HH
Q 009324 450 PQWINCDIRNFRMDI---LGQFGVIMADPPWDIHMELPY-GTM-ADDEMRNLNVPALQTDGLIFLWVTGRAM------EL 518 (537)
Q Consensus 450 pQwIncDVR~fD~si---LGKFDVIlADPPWdi~m~l~Y-~TM-SddEIkaLPV~~LqddglLFLWVTnr~L------e~ 518 (537)
..|++.|+..+-... .++||+|++|||+........ ... ...++...=+..|.++|++++-+....+ +.
T Consensus 273 v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 352 (396)
T 3c0k_A 273 AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKI 352 (396)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHH
T ss_pred eEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHH
Confidence 468889987653211 358999999999754322111 111 1223322223445588988876654332 22
Q ss_pred HHHHHhcCCcEE
Q 009324 519 GREWYMFLVMSI 530 (537)
Q Consensus 519 grElL~aWGFry 530 (537)
..+.+...|+++
T Consensus 353 i~~~~~~~g~~~ 364 (396)
T 3c0k_A 353 IADAAIDAGRDV 364 (396)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHcCCeE
Confidence 334666677544
No 36
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=66.63 E-value=5 Score=40.91 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=40.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcE
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMS 529 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFr 529 (537)
..|++.|+..+... +||+|++|||.. -+...-+..+ ..+.++|++|+-|....+..-...|. |+
T Consensus 339 v~~~~~d~~~~~~~---~fD~Vv~dPPr~--------g~~~~~~~~l--~~l~p~givyvsc~p~tlarDl~~l~---y~ 402 (425)
T 2jjq_A 339 AEFEVASDREVSVK---GFDTVIVDPPRA--------GLHPRLVKRL--NREKPGVIVYVSCNPETFARDVKMLD---YR 402 (425)
T ss_dssp EEEEECCTTTCCCT---TCSEEEECCCTT--------CSCHHHHHHH--HHHCCSEEEEEESCHHHHHHHHHHSS---CC
T ss_pred EEEEECChHHcCcc---CCCEEEEcCCcc--------chHHHHHHHH--HhcCCCcEEEEECChHHHHhHHhhCe---EE
Confidence 67899998876432 899999999952 1222222222 13678999988764433332222333 66
Q ss_pred EEEE
Q 009324 530 IIII 533 (537)
Q Consensus 530 y~t~ 533 (537)
+...
T Consensus 403 l~~~ 406 (425)
T 2jjq_A 403 IDEI 406 (425)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 37
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=62.87 E-value=9.4 Score=38.48 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=47.1
Q ss_pred CCceeeccCCcCCCC---CCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhc
Q 009324 449 EPQWINCDIRNFRMD---ILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMF 525 (537)
Q Consensus 449 PpQwIncDVR~fD~s---iLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~a 525 (537)
...|++.|+..+--. ..++||+|++|||..- +. +-+..| ..+.+++++|+=|....+......|..
T Consensus 335 ~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g--------~~-~~~~~l--~~~~p~~ivyvsc~p~tlard~~~l~~ 403 (433)
T 1uwv_A 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG--------AA-GVMQQI--IKLEPIRIVYVSCNPATLARDSEALLK 403 (433)
T ss_dssp SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC--------CH-HHHHHH--HHHCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEECCHHHHhhhhhhhcCCCCEEEECCCCcc--------HH-HHHHHH--HhcCCCeEEEEECChHHHHhhHHHHHH
Confidence 357888888763211 1258999999999753 21 222222 234578888887766666555556665
Q ss_pred CCcEEEEE
Q 009324 526 LVMSIIII 533 (537)
Q Consensus 526 WGFry~t~ 533 (537)
=||+....
T Consensus 404 ~Gy~~~~~ 411 (433)
T 1uwv_A 404 AGYTIARL 411 (433)
T ss_dssp TTCEEEEE
T ss_pred CCcEEEEE
Confidence 69988763
No 38
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=62.46 E-value=11 Score=33.46 Aligned_cols=71 Identities=7% Similarity=-0.157 Sum_probs=47.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecC-CcchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVT-GRAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVT-nr~Le~grElL~aWGF 528 (537)
..|++.|+... +..+++||+|++++.. ..+ +.+-=...|.++|.+++-+. ...+....+.++.+||
T Consensus 106 v~~~~~d~~~~-~~~~~~~D~v~~~~~~-----------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 106 MRAVQGTAPAA-LADLPLPEAVFIGGGG-----------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGG 172 (204)
T ss_dssp EEEEESCTTGG-GTTSCCCSEEEECSCC-----------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred EEEEeCchhhh-cccCCCCCEEEECCcc-----------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCC
Confidence 56888888762 2234689999998743 122 22221233668888877654 4556788899999999
Q ss_pred EEEEE
Q 009324 529 SIIII 533 (537)
Q Consensus 529 ry~t~ 533 (537)
++...
T Consensus 173 ~i~~i 177 (204)
T 3njr_A 173 QLLRI 177 (204)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88764
No 39
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=60.96 E-value=1.8 Score=37.38 Aligned_cols=60 Identities=7% Similarity=0.036 Sum_probs=34.9
Q ss_pred CCceeeccCCcCCCCC-CCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecC
Q 009324 449 EPQWINCDIRNFRMDI-LGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVT 512 (537)
Q Consensus 449 PpQwIncDVR~fD~si-LGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVT 512 (537)
..+|+++|+..+.... .++||+|++|||+..... ...--..++.. -.-|.++|++++-..
T Consensus 94 ~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~--~~~~~l~~~~~--~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 94 GATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSA--DVDAILAALGT--NGWTREGTVAVVERA 154 (189)
T ss_dssp CEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHH--HHHHHHHHHHH--SSSCCTTCEEEEEEE
T ss_pred ceEEEEccHHHHHhhccCCCccEEEECCCCCcchh--hHHHHHHHHHh--cCccCCCeEEEEEec
Confidence 3678999998764322 479999999999764210 00001111211 113568888877654
No 40
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=60.80 E-value=10 Score=33.41 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=49.0
Q ss_pred CCceeeccCCcCC-CCCCCCccEEEECCC--ccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc-hHHHHHHHh
Q 009324 449 EPQWINCDIRNFR-MDILGQFGVIMADPP--WDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA-MELGREWYM 524 (537)
Q Consensus 449 PpQwIncDVR~fD-~siLGKFDVIlADPP--Wdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~-Le~grElL~ 524 (537)
...++++|+..+. .-..+.||+|++++| |....... ..+...++.+.=..-|.++|.+++-+.+.. .+...++++
T Consensus 92 ~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 170 (214)
T 1yzh_A 92 NIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEK-RRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFS 170 (214)
T ss_dssp SEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGG-GSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhh-hccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 3578999998754 112468999999987 32111000 011223332221233568899877654533 456678888
Q ss_pred cCCcEEEEE
Q 009324 525 FLVMSIIII 533 (537)
Q Consensus 525 aWGFry~t~ 533 (537)
.-||+.+..
T Consensus 171 ~~g~~~~~~ 179 (214)
T 1yzh_A 171 QYGMKLNGV 179 (214)
T ss_dssp HHTCEEEEE
T ss_pred HCCCeeeec
Confidence 889987654
No 41
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=60.69 E-value=2 Score=35.94 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=39.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc-hHHHHHHHhcC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA-MELGREWYMFL 526 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~-Le~grElL~aW 526 (537)
..++.+|+..+. ..++||+|+++||+..... ...++.+-=...|.++|.+++-+.+.. .+...+.|+..
T Consensus 104 ~~~~~~d~~~~~--~~~~~D~v~~~~~~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 173 (194)
T 1dus_A 104 IRVVHSDLYENV--KDRKYNKIITNPPIRAGKE------VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV 173 (194)
T ss_dssp EEEEECSTTTTC--TTSCEEEEEECCCSTTCHH------HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred eEEEECchhccc--ccCCceEEEECCCcccchh------HHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence 567888887632 2568999999999753100 011111111222458898887776543 34455655554
No 42
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=59.82 E-value=3.1 Score=40.00 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=21.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi 479 (537)
.++++.|...+--....+||+|++|||+..
T Consensus 147 i~~~~~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 147 LQLIHASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp EEEEESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred EEEEECCHHHHHHhCcccCCEEEEcCCCCC
Confidence 468888877642122247999999999954
No 43
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=59.82 E-value=3.4 Score=40.54 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=44.8
Q ss_pred CceeeccCCcCCCCC---CCCccEEEECCCc-cccccC-CCCCC-CHHHHhcCCccccCCCcEEEEecCCcc---hHH--
Q 009324 450 PQWINCDIRNFRMDI---LGQFGVIMADPPW-DIHMEL-PYGTM-ADDEMRNLNVPALQTDGLIFLWVTGRA---MEL-- 518 (537)
Q Consensus 450 pQwIncDVR~fD~si---LGKFDVIlADPPW-di~m~l-~Y~TM-SddEIkaLPV~~LqddglLFLWVTnr~---Le~-- 518 (537)
..|++.|+..+.... .++||+|++|||. ...... .+... ...++...=..-|.++|++++-++... .+.
T Consensus 205 v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~ 284 (332)
T 2igt_A 205 IRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMH 284 (332)
T ss_dssp EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHH
T ss_pred eEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHH
Confidence 579999987753221 3689999999994 322110 00000 112333222344668898766554322 222
Q ss_pred --HHHHHhcCCcEEE
Q 009324 519 --GREWYMFLVMSII 531 (537)
Q Consensus 519 --grElL~aWGFry~ 531 (537)
..+.++..||++.
T Consensus 285 ~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 285 ELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHcCCeEE
Confidence 2335558999875
No 44
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=59.22 E-value=4.6 Score=39.17 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=44.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccccc-CCCC-CCCHHHH--------------------hcCCccccCCCcEE
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHME-LPYG-TMADDEM--------------------RNLNVPALQTDGLI 507 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~-l~Y~-TMSddEI--------------------kaLPV~~LqddglL 507 (537)
..++++|+..+.. .++||+|+++|||-.... .+|. .+..+.- ...=...|.++|.+
T Consensus 83 ~~~~~~D~~~~~~--~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~ 160 (421)
T 2ih2_A 83 AEGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVL 160 (421)
T ss_dssp EEEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEE
T ss_pred CcEEeCChhhcCc--cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEE
Confidence 4678888876543 479999999999965432 1221 0222211 11112234478887
Q ss_pred EEecCCc-----chHHHHHHHhcCCc
Q 009324 508 FLWVTGR-----AMELGREWYMFLVM 528 (537)
Q Consensus 508 FLWVTnr-----~Le~grElL~aWGF 528 (537)
.+=+.+. ..+.-++.|..-|+
T Consensus 161 ~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 161 VFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp EEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred EEEEChHHhcCccHHHHHHHHHhcCC
Confidence 6655433 44666777766676
No 45
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=58.79 E-value=8.9 Score=34.56 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=48.8
Q ss_pred CceeeccCCcCCCC--CCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc---hHHHHHHHh
Q 009324 450 PQWINCDIRNFRMD--ILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA---MELGREWYM 524 (537)
Q Consensus 450 pQwIncDVR~fD~s--iLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~---Le~grElL~ 524 (537)
-.++++|+..+.+. ..++||+|+++.- ....++.+.=..-|.++|.++++..... ++...+.++
T Consensus 122 v~~~~~d~~~~~~~~~~~~~fD~V~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~ 190 (240)
T 1xdz_A 122 TTFCHDRAETFGQRKDVRESYDIVTARAV-----------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAIT 190 (240)
T ss_dssp EEEEESCHHHHTTCTTTTTCEEEEEEECC-----------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHH
T ss_pred EEEEeccHHHhcccccccCCccEEEEecc-----------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHH
Confidence 57899999877653 2479999998651 2244444433344568999988865433 334667788
Q ss_pred cCCcEEEEEE
Q 009324 525 FLVMSIIIII 534 (537)
Q Consensus 525 aWGFry~t~I 534 (537)
..||+.+...
T Consensus 191 ~~g~~~~~~~ 200 (240)
T 1xdz_A 191 TLGGELENIH 200 (240)
T ss_dssp HTTEEEEEEE
T ss_pred HcCCeEeEEE
Confidence 8999887543
No 46
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=57.93 E-value=21 Score=32.25 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=50.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEE----ecCCc-----------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFL----WVTGR----------- 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFL----WVTnr----------- 514 (537)
..++.+|++.+.+. .++||+|++...... +...++.+-=...|.++|.+++ |....
T Consensus 98 v~~~~~d~~~~~~~-~~~fD~i~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 168 (267)
T 3kkz_A 98 VTGIVGSMDDLPFR-NEELDLIWSEGAIYN--------IGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD 168 (267)
T ss_dssp EEEEECCTTSCCCC-TTCEEEEEESSCGGG--------TCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHH
T ss_pred cEEEEcChhhCCCC-CCCEEEEEEcCCcee--------cCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHH
Confidence 57899999887653 479999998876543 1334433322233558888876 33321
Q ss_pred ------chHHHHHHHhcCCcEEEEEEe
Q 009324 515 ------AMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 515 ------~Le~grElL~aWGFry~t~Iv 535 (537)
..+.-.++|+.=||+.+....
T Consensus 169 ~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 169 AYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp HCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 234556788999999987654
No 47
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=56.83 E-value=4 Score=37.21 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=42.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCC--ccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC-cchHHHHHHHhc-
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPP--WDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG-RAMELGREWYMF- 525 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPP--Wdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn-r~Le~grElL~a- 525 (537)
..++..|+..+.+. .++||+|++|+| |.+ .+++. ..|.++|.+++.+.. ..+....+.|+.
T Consensus 155 v~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~----------l~~~~----~~L~pgG~l~~~~~~~~~~~~~~~~l~~~ 219 (280)
T 1i9g_A 155 WRLVVSDLADSELP-DGSVDRAVLDMLAPWEV----------LDAVS----RLLVAGGVLMVYVATVTQLSRIVEALRAK 219 (280)
T ss_dssp EEEECSCGGGCCCC-TTCEEEEEEESSCGGGG----------HHHHH----HHEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEECchHhcCCC-CCceeEEEECCcCHHHH----------HHHHH----HhCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 46788888876543 468999999876 211 22222 224588999888765 345556666665
Q ss_pred CCcEEE
Q 009324 526 LVMSII 531 (537)
Q Consensus 526 WGFry~ 531 (537)
.||...
T Consensus 220 ~~f~~~ 225 (280)
T 1i9g_A 220 QCWTEP 225 (280)
T ss_dssp SSBCCC
T ss_pred CCcCCc
Confidence 788543
No 48
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=56.67 E-value=5.5 Score=40.24 Aligned_cols=29 Identities=17% Similarity=0.507 Sum_probs=24.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
..|++.|+..+... ++||+|++||||-..
T Consensus 285 I~~~~~D~~~l~~~--~~fD~Iv~NPPYG~r 313 (384)
T 3ldg_A 285 VKLKQMRLQDFKTN--KINGVLISNPPYGER 313 (384)
T ss_dssp EEEEECCGGGCCCC--CCSCEEEECCCCTTT
T ss_pred eEEEECChHHCCcc--CCcCEEEECCchhhc
Confidence 57899999887653 589999999999765
No 49
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=56.46 E-value=5.5 Score=39.93 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=23.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
.+|+++|+..+.. .++||+|++||||-..
T Consensus 286 i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~r 314 (385)
T 3ldu_A 286 IEFNVGDATQFKS--EDEFGFIITNPPYGER 314 (385)
T ss_dssp EEEEECCGGGCCC--SCBSCEEEECCCCCCS
T ss_pred eEEEECChhhcCc--CCCCcEEEECCCCcCc
Confidence 5789999887654 3689999999999654
No 50
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=56.01 E-value=3.4 Score=36.81 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=23.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
..|+++|+..+. ..++||+|++||||...
T Consensus 129 ~~~~~~d~~~~~--~~~~~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 129 IEFICGDFLLLA--SFLKADVVFLSPPWGGP 157 (241)
T ss_dssp EEEEESCHHHHG--GGCCCSEEEECCCCSSG
T ss_pred eEEEECChHHhc--ccCCCCEEEECCCcCCc
Confidence 578999998765 44799999999999753
No 51
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=55.76 E-value=4.3 Score=41.60 Aligned_cols=72 Identities=17% Similarity=0.041 Sum_probs=42.7
Q ss_pred ceeeccCCcCCCC---CCCCccEEEECCCc-cccccCCCCCCCHHHHhcCC----ccccCCCcEEEEecCCcchHHHHHH
Q 009324 451 QWINCDIRNFRMD---ILGQFGVIMADPPW-DIHMELPYGTMADDEMRNLN----VPALQTDGLIFLWVTGRAMELGREW 522 (537)
Q Consensus 451 QwIncDVR~fD~s---iLGKFDVIlADPPW-di~m~l~Y~TMSddEIkaLP----V~~LqddglLFLWVTnr~Le~grEl 522 (537)
+++..|.+.|=-. .-++||+|++|||= .+..... . +...+..+.= ...|.++|++++|.....+.....+
T Consensus 248 ~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~-~-L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~~~~e~~~~ 325 (364)
T 2qfm_A 248 QVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPE-E-DSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSL 325 (364)
T ss_dssp EEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHH
T ss_pred EEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCch-h-hhHHHHHHHHHHHHHhhCCCCcEEEEEcCCcchHHHHHH
Confidence 5677777765322 24689999999964 2221110 0 2222322221 3456799999999998887665555
Q ss_pred Hh
Q 009324 523 YM 524 (537)
Q Consensus 523 L~ 524 (537)
++
T Consensus 326 ~~ 327 (364)
T 2qfm_A 326 YE 327 (364)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 52
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=55.57 E-value=9.6 Score=32.87 Aligned_cols=68 Identities=6% Similarity=-0.056 Sum_probs=43.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcE
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMS 529 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFr 529 (537)
..|+++|+..+. ..++||+|++..- -....+.+.=...|.++|.+++.......+...++++ ||+
T Consensus 117 v~~~~~d~~~~~--~~~~~D~i~~~~~-----------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~ 181 (207)
T 1jsx_A 117 IEPVQSRVEEFP--SEPPFDGVISRAF-----------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQ 181 (207)
T ss_dssp EEEEECCTTTSC--CCSCEEEEECSCS-----------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEE
T ss_pred eEEEecchhhCC--ccCCcCEEEEecc-----------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCc
Confidence 578888887664 3478999998531 1122332222234558899988876666666666666 888
Q ss_pred EEE
Q 009324 530 III 532 (537)
Q Consensus 530 y~t 532 (537)
.+.
T Consensus 182 ~~~ 184 (207)
T 1jsx_A 182 VES 184 (207)
T ss_dssp EEE
T ss_pred eee
Confidence 765
No 53
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=54.60 E-value=2 Score=44.28 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=22.7
Q ss_pred CCceeeccCCcC-CCCCCCCccEEEECCCcccc
Q 009324 449 EPQWINCDIRNF-RMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 449 PpQwIncDVR~f-D~siLGKFDVIlADPPWdi~ 480 (537)
..+|+++|+..+ +....++||+|++||||...
T Consensus 144 ~i~~i~~Da~~~L~~~~~~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 144 DVNILTGDFKEYLPLIKTFHPDYIYVDPARRSG 176 (410)
T ss_dssp EEEEEESCGGGSHHHHHHHCCSEEEECCEEC--
T ss_pred cEEEEECcHHHhhhhccCCCceEEEECCCCcCC
Confidence 468999999865 22112589999999999763
No 54
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=54.10 E-value=27 Score=30.99 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=48.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEE----ecCCc-----------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFL----WVTGR----------- 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFL----WVTnr----------- 514 (537)
..++++|+..+.+. .++||+|++.-.... ++.+++.+-=...|.++|.+++ |....
T Consensus 98 ~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 168 (257)
T 3f4k_A 98 VKGITGSMDNLPFQ-NEELDLIWSEGAIYN--------IGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD 168 (257)
T ss_dssp EEEEECCTTSCSSC-TTCEEEEEEESCSCC--------CCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH
T ss_pred eEEEECChhhCCCC-CCCEEEEEecChHhh--------cCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH
Confidence 57899999877653 479999998754332 2334433322233558888876 33322
Q ss_pred ------chHHHHHHHhcCCcEEEEEEe
Q 009324 515 ------AMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 515 ------~Le~grElL~aWGFry~t~Iv 535 (537)
..+.-.++|+.=||+.+....
T Consensus 169 ~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (257)
T 3f4k_A 169 AYPEISVIPTCIDKMERAGYTPTAHFI 195 (257)
T ss_dssp HCTTCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred hCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 234557789999999887543
No 55
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=53.65 E-value=4 Score=36.22 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG 513 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn 513 (537)
...|++.|+..+.....++||+|++|||+... .+ .--.+++.. ..-|.++|++++-+..
T Consensus 104 ~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~---~~-~~~l~~l~~--~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 104 NARVVNSNAMSFLAQKGTPHNIVFVDPPFRRG---LL-EETINLLED--NGWLADEALIYVESEV 162 (202)
T ss_dssp SEEEECSCHHHHHSSCCCCEEEEEECCSSSTT---TH-HHHHHHHHH--TTCEEEEEEEEEEEEG
T ss_pred cEEEEECCHHHHHhhcCCCCCEEEECCCCCCC---cH-HHHHHHHHh--cCccCCCcEEEEEECC
Confidence 35788889876432244689999999995421 00 011223333 2225588888766543
No 56
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=52.36 E-value=7.1 Score=39.41 Aligned_cols=29 Identities=21% Similarity=0.598 Sum_probs=23.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
..|+++|+..+.. .++||+|++||||-..
T Consensus 292 I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~r 320 (393)
T 3k0b_A 292 ITFRQLQVADFQT--EDEYGVVVANPPYGER 320 (393)
T ss_dssp SEEEECCGGGCCC--CCCSCEEEECCCCCCS
T ss_pred eEEEECChHhCCC--CCCCCEEEECCCCccc
Confidence 5789999987765 3589999999999654
No 57
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=52.35 E-value=10 Score=35.84 Aligned_cols=63 Identities=16% Similarity=0.020 Sum_probs=37.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA 515 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~ 515 (537)
-.++..|.+.+--...++||+|++|++..... .....+ .++.+.=-..|.++|++.+|+.++.
T Consensus 131 v~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l~~-~~~~~~~~~~L~pgG~lv~~~~~~~ 193 (275)
T 1iy9_A 131 VDVQVDDGFMHIAKSENQYDVIMVDSTEPVGP--AVNLFT-KGFYAGIAKALKEDGIFVAQTDNPW 193 (275)
T ss_dssp EEEEESCSHHHHHTCCSCEEEEEESCSSCCSC--CCCCST-THHHHHHHHHEEEEEEEEEECCCTT
T ss_pred eEEEECcHHHHHhhCCCCeeEEEECCCCCCCc--chhhhH-HHHHHHHHHhcCCCcEEEEEcCCcc
Confidence 36778887764212246899999999864321 111112 2332222245669999999987643
No 58
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=52.28 E-value=13 Score=32.48 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADP 475 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADP 475 (537)
...|+++|+..+++. ++||+|++..
T Consensus 85 ~~~~~~~d~~~~~~~--~~fD~v~~~~ 109 (246)
T 1y8c_A 85 KPRLACQDISNLNIN--RKFDLITCCL 109 (246)
T ss_dssp CCEEECCCGGGCCCS--CCEEEEEECT
T ss_pred CeEEEecccccCCcc--CCceEEEEcC
Confidence 367899999988765 8999999976
No 59
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=52.08 E-value=17 Score=30.26 Aligned_cols=70 Identities=9% Similarity=-0.076 Sum_probs=43.9
Q ss_pred eeeccCCcCCCCCC-CCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecC-CcchHHHHHHHhcCCcE
Q 009324 452 WINCDIRNFRMDIL-GQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVT-GRAMELGREWYMFLVMS 529 (537)
Q Consensus 452 wIncDVR~fD~siL-GKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVT-nr~Le~grElL~aWGFr 529 (537)
++.+|... .+... ++||+|+++.+... .--.+++.+ .|.++|.+++=.. ........+.++.+|++
T Consensus 79 ~~~~d~~~-~~~~~~~~~D~i~~~~~~~~-------~~~l~~~~~----~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (178)
T 3hm2_A 79 AVQQGAPR-AFDDVPDNPDVIFIGGGLTA-------PGVFAAAWK----RLPVGGRLVANAVTVESEQMLWALRKQFGGT 146 (178)
T ss_dssp EEECCTTG-GGGGCCSCCSEEEECC-TTC-------TTHHHHHHH----TCCTTCEEEEEECSHHHHHHHHHHHHHHCCE
T ss_pred EEecchHh-hhhccCCCCCEEEECCcccH-------HHHHHHHHH----hcCCCCEEEEEeeccccHHHHHHHHHHcCCe
Confidence 67777654 33333 79999998876533 122333332 3568888766443 34556778899999988
Q ss_pred EEEE
Q 009324 530 IIII 533 (537)
Q Consensus 530 y~t~ 533 (537)
+...
T Consensus 147 ~~~~ 150 (178)
T 3hm2_A 147 ISSF 150 (178)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7653
No 60
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=52.03 E-value=19 Score=31.61 Aligned_cols=52 Identities=10% Similarity=0.322 Sum_probs=33.6
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHH---hcCCccccCCCcEEEEe
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEM---RNLNVPALQTDGLIFLW 510 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEI---kaLPV~~LqddglLFLW 510 (537)
...++++|+..+++. ++||+|++...... +++.+. .+-=..-|.++|.+++-
T Consensus 93 ~~~~~~~d~~~~~~~--~~fD~v~~~~~l~~--------~~~~~~~~~l~~~~~~LkpgG~l~~~ 147 (234)
T 3dtn_A 93 KVKYIEADYSKYDFE--EKYDMVVSALSIHH--------LEDEDKKELYKRSYSILKESGIFINA 147 (234)
T ss_dssp TEEEEESCTTTCCCC--SCEEEEEEESCGGG--------SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEEeCchhccCCC--CCceEEEEeCcccc--------CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 357899999988877 89999999865543 344442 11111224478887763
No 61
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=52.03 E-value=22 Score=30.82 Aligned_cols=77 Identities=1% Similarity=-0.189 Sum_probs=47.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC-------------cch
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG-------------RAM 516 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn-------------r~L 516 (537)
..++.+|+..+.+. .++||+|++.-....- . +...+.+-=...|.++|.+++.... ...
T Consensus 90 ~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~-----~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 161 (219)
T 3dh0_A 90 VEVLKSEENKIPLP-DNTVDFIFMAFTFHEL-----S--EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSE 161 (219)
T ss_dssp EEEEECBTTBCSSC-SSCEEEEEEESCGGGC-----S--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCH
T ss_pred EEEEecccccCCCC-CCCeeEEEeehhhhhc-----C--CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCH
Confidence 57899999877642 3689999986544321 0 1122211112234578888774321 124
Q ss_pred HHHHHHHhcCCcEEEEEE
Q 009324 517 ELGREWYMFLVMSIIIII 534 (537)
Q Consensus 517 e~grElL~aWGFry~t~I 534 (537)
+.-.++|+.-||+.+...
T Consensus 162 ~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 162 WEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEE
Confidence 677889999999988654
No 62
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=52.00 E-value=16 Score=32.26 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=42.6
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc-chHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR-AMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr-~Le~grElL~aWGF 528 (537)
..++..|+....+ ..++||+|++|||-. .-..+++. ..|.++|.+++.+... .+....+.|+.. |
T Consensus 142 ~~~~~~d~~~~~~-~~~~~D~v~~~~~~~--------~~~l~~~~----~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f 207 (248)
T 2yvl_A 142 VKFFNVDFKDAEV-PEGIFHAAFVDVREP--------WHYLEKVH----KSLMEGAPVGFLLPTANQVIKLLESIENY-F 207 (248)
T ss_dssp EEEECSCTTTSCC-CTTCBSEEEECSSCG--------GGGHHHHH----HHBCTTCEEEEEESSHHHHHHHHHHSTTT-E
T ss_pred EEEEEcChhhccc-CCCcccEEEECCcCH--------HHHHHHHH----HHcCCCCEEEEEeCCHHHHHHHHHHHHhh-C
Confidence 4677788776431 235899999998811 01123332 3356899999888753 456666777776 6
Q ss_pred EEE
Q 009324 529 SII 531 (537)
Q Consensus 529 ry~ 531 (537)
.-.
T Consensus 208 ~~~ 210 (248)
T 2yvl_A 208 GNL 210 (248)
T ss_dssp EEE
T ss_pred Ccc
Confidence 644
No 63
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=51.85 E-value=36 Score=29.42 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=46.7
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHH---hcCCccccCCCcEEEEecCCc-----------
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEM---RNLNVPALQTDGLIFLWVTGR----------- 514 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEI---kaLPV~~LqddglLFLWVTnr----------- 514 (537)
...|+++|+..+.+. ++||+|++.-.... +.+.+. .+-=...|.++|.+++=..+.
T Consensus 90 ~~~~~~~d~~~~~~~--~~fD~v~~~~~l~~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 159 (220)
T 3hnr_A 90 EFSITEGDFLSFEVP--TSIDTIVSTYAFHH--------LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVE 159 (220)
T ss_dssp TCCEESCCSSSCCCC--SCCSEEEEESCGGG--------SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHH
T ss_pred ceEEEeCChhhcCCC--CCeEEEEECcchhc--------CChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHH
Confidence 357899999988876 99999998744332 333321 111112345888887643210
Q ss_pred --------------------chHHHHHHHhcCCcEEEEE
Q 009324 515 --------------------AMELGREWYMFLVMSIIII 533 (537)
Q Consensus 515 --------------------~Le~grElL~aWGFry~t~ 533 (537)
..+.-.++|+.=||+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 160 AAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp HHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred HHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 2245567888889987654
No 64
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=51.68 E-value=4.1 Score=40.66 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=32.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM 516 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L 516 (537)
..|+..|+... -..++||+|++|||+......... ...++..-=...|.++|.+++ ++++.+
T Consensus 277 v~~~~~D~~~~--~~~~~fD~Ii~nppfh~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i-v~n~~~ 338 (375)
T 4dcm_A 277 CEFMINNALSG--VEPFRFNAVLCNPPFHQQHALTDN--VAWEMFHHARRCLKINGELYI-VANRHL 338 (375)
T ss_dssp EEEEECSTTTT--CCTTCEEEEEECCCC-------CC--HHHHHHHHHHHHEEEEEEEEE-EEETTS
T ss_pred EEEEechhhcc--CCCCCeeEEEECCCcccCcccCHH--HHHHHHHHHHHhCCCCcEEEE-EEECCc
Confidence 46788888752 234689999999998643221111 011221111223558898888 445444
No 65
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=51.57 E-value=6.6 Score=37.97 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=33.6
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr 514 (537)
-.++..|.+.+--...++||+|++|++=.+... ....+ .++.+.--..|.++|++.+++..+
T Consensus 140 v~~~~~D~~~~l~~~~~~fDvIi~D~~~p~~~~--~~l~~-~~f~~~~~~~LkpgG~lv~~~~s~ 201 (294)
T 3adn_A 140 FKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPG--ESLFT-SAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp CCEECSCSCC---CCCCCEEEEEECC------------CC-HHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred eEEEEChHHHHHhhcCCCccEEEECCCCccCcc--hhccH-HHHHHHHHHhcCCCCEEEEecCCc
Confidence 477888887763334579999999987432211 11112 333333234466999999987544
No 66
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=51.46 E-value=5.2 Score=39.85 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=24.8
Q ss_pred CccEEEECCCccccccCCCCCCCHHHHh-cCC-ccccCCCcEEEEecCC
Q 009324 467 QFGVIMADPPWDIHMELPYGTMADDEMR-NLN-VPALQTDGLIFLWVTG 513 (537)
Q Consensus 467 KFDVIlADPPWdi~m~l~Y~TMSddEIk-aLP-V~~LqddglLFLWVTn 513 (537)
+||+|++|||+.... ..+++. .|- ...+.++|++.+|..-
T Consensus 159 ~fdLVfiDPPYe~k~-------~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 159 KRGLIFIDPSYERKE-------EYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp SCEEEEECCCCCSTT-------HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CccEEEECCCCCCCc-------HHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 699999999987531 122221 111 1123378999999864
No 67
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=50.81 E-value=7.8 Score=36.87 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=42.9
Q ss_pred CceeeccCCcCCCCCCCCc---cEEEECCCcccccc-----CCCCC-C-------CHHHHhcCCccccCCCcEEEEecCC
Q 009324 450 PQWINCDIRNFRMDILGQF---GVIMADPPWDIHME-----LPYGT-M-------ADDEMRNLNVPALQTDGLIFLWVTG 513 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKF---DVIlADPPWdi~m~-----l~Y~T-M-------SddEIkaLPV~~LqddglLFLWVTn 513 (537)
..|+++|+...- .++| |+|+++|||--... ..|.. + ..+-++.+-...+.++|++++-+..
T Consensus 175 v~~~~~D~~~~~---~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 175 FFVRKGEFLEPF---KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp EEEEESSTTGGG---GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred eEEEECcchhhc---ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 578889987632 1578 99999999964321 00110 0 0012222211334489999998777
Q ss_pred cchHHHHHHHhcC
Q 009324 514 RAMELGREWYMFL 526 (537)
Q Consensus 514 r~Le~grElL~aW 526 (537)
...+...+++++-
T Consensus 252 ~q~~~v~~~~~~~ 264 (284)
T 1nv8_A 252 DQVEELKKIVSDT 264 (284)
T ss_dssp TCHHHHTTTSTTC
T ss_pred hHHHHHHHHHHhC
Confidence 6666666666543
No 68
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=50.79 E-value=10 Score=37.16 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=28.6
Q ss_pred CccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcEEEEEE
Q 009324 467 QFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 467 KFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFry~t~I 534 (537)
+||+|++|||..- +..+-+..|- ....++|+=|....+..-.+.|.. ||+.....
T Consensus 295 ~fD~Vv~dPPr~g--------~~~~~~~~l~----~~g~ivyvsc~p~t~ard~~~l~~-~y~~~~~~ 349 (369)
T 3bt7_A 295 QCETIFVDPPRSG--------LDSETEKMVQ----AYPRILYISCNPETLCKNLETLSQ-THKVERLA 349 (369)
T ss_dssp CEEEEEECCCTTC--------CCHHHHHHHT----TSSEEEEEESCHHHHHHHHHHHHH-HEEEEEEE
T ss_pred CCCEEEECcCccc--------cHHHHHHHHh----CCCEEEEEECCHHHHHHHHHHHhh-CcEEEEEE
Confidence 7999999999751 2222232221 134455554443333332333444 78776543
No 69
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=50.02 E-value=12 Score=30.38 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=41.9
Q ss_pred CceeeccCCcCCC-------CCCCCccEEEECCCccccccCCCCCCCH-------HHHhcCCccccCCCcEEEEecC-Cc
Q 009324 450 PQWINCDIRNFRM-------DILGQFGVIMADPPWDIHMELPYGTMAD-------DEMRNLNVPALQTDGLIFLWVT-GR 514 (537)
Q Consensus 450 pQwIncDVR~fD~-------siLGKFDVIlADPPWdi~m~l~Y~TMSd-------dEIkaLPV~~LqddglLFLWVT-nr 514 (537)
..++..|+..++. -..++||+|++|+|....... ..+. .++.+-=..-|.++|.+++.+. ..
T Consensus 64 ~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 64 VDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTP---AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp EEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCH---HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred EEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCC---ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 4677888877651 123689999999997542110 0000 1111111223457888877543 33
Q ss_pred chHHHHHHHhcCCcEEEE
Q 009324 515 AMELGREWYMFLVMSIII 532 (537)
Q Consensus 515 ~Le~grElL~aWGFry~t 532 (537)
......+.++.. |+.+.
T Consensus 141 ~~~~~~~~~~~~-~~~~~ 157 (180)
T 1ej0_A 141 GFDEYLREIRSL-FTKVK 157 (180)
T ss_dssp THHHHHHHHHHH-EEEEE
T ss_pred cHHHHHHHHHHh-hhhEE
Confidence 445555666553 55443
No 70
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=49.80 E-value=25 Score=30.31 Aligned_cols=78 Identities=6% Similarity=-0.078 Sum_probs=48.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHH---HHhcCCccccCCCcEEEEecC--------------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADD---EMRNLNVPALQTDGLIFLWVT-------------- 512 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSdd---EIkaLPV~~LqddglLFLWVT-------------- 512 (537)
..++.+|+..+.+. .++||+|++...+..- -+.+ .+.+-=...|.++|.+++-..
T Consensus 85 ~~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~-------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 156 (235)
T 3sm3_A 85 AEFKVENASSLSFH-DSSFDFAVMQAFLTSV-------PDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYL 156 (235)
T ss_dssp EEEEECCTTSCCSC-TTCEEEEEEESCGGGC-------CCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHH
T ss_pred eEEEEecccccCCC-CCceeEEEEcchhhcC-------CCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhh
Confidence 57889999887653 4789999987554431 1112 111111122447787766422
Q ss_pred ---------------------------CcchHHHHHHHhcCCcEEEEEEe
Q 009324 513 ---------------------------GRAMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 513 ---------------------------nr~Le~grElL~aWGFry~t~Iv 535 (537)
....+.-.++|+.=||+.+....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 157 HDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp HHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 12356778899999999987643
No 71
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=48.04 E-value=3.5 Score=34.89 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=33.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG 513 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn 513 (537)
..|++.|+..+--...++||+|++||||..... .-....+.+ ..-|.++|++++-+..
T Consensus 83 ~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~~~~----~~~~~~l~~--~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 83 FTLLKMEAERAIDCLTGRFDLVFLDPPYAKETI----VATIEALAA--KNLLSEQVMVVCETDK 140 (177)
T ss_dssp EEEECSCHHHHHHHBCSCEEEEEECCSSHHHHH----HHHHHHHHH--TTCEEEEEEEEEEEET
T ss_pred eEEEECcHHHhHHhhcCCCCEEEECCCCCcchH----HHHHHHHHh--CCCcCCCcEEEEEECC
Confidence 468888887642223367999999999742210 001122322 2345588888776654
No 72
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=47.46 E-value=6.5 Score=34.81 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=34.3
Q ss_pred CceeeccCCcCCCC-CCCC-ccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc
Q 009324 450 PQWINCDIRNFRMD-ILGQ-FGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA 515 (537)
Q Consensus 450 pQwIncDVR~fD~s-iLGK-FDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~ 515 (537)
..+++.|+..+... ..++ ||+|++|||+.... +. --..++.+ ..-|.++|++++-+....
T Consensus 106 v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~---~~-~~l~~~~~--~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 106 AEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNL---AE-QAISLLCE--NNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EEEECSCHHHHTTSCCSSCCEEEEEECCCSSSCH---HH-HHHHHHHH--TTCEEEEEEEEEEEESSS
T ss_pred eEEEECCHHHHHHhhccCCCCCEEEECCCCCCcc---HH-HHHHHHHh--cCccCCCcEEEEEECCCC
Confidence 47888888766433 2468 99999999954210 00 00122222 122558888877665443
No 73
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=47.35 E-value=13 Score=33.53 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=21.1
Q ss_pred CceeeccCCcC--C-CCC--CCCccEEEECCCccc
Q 009324 450 PQWINCDIRNF--R-MDI--LGQFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~f--D-~si--LGKFDVIlADPPWdi 479 (537)
..|++.|+... + +.. .++||+|++||||..
T Consensus 118 v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~ 152 (254)
T 2h00_A 118 IKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFA 152 (254)
T ss_dssp EEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred EEEEEcchhhhhhhhhhcccCCcccEEEECCCCcc
Confidence 57899998752 2 222 258999999999853
No 74
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=47.24 E-value=28 Score=30.19 Aligned_cols=75 Identities=12% Similarity=0.007 Sum_probs=46.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc---chHHHHHHHhcC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR---AMELGREWYMFL 526 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr---~Le~grElL~aW 526 (537)
..++.+|+..+++ ..++||+|++..... + -...++.+-=...|.++|.+++-.... ..+.-.++|+.-
T Consensus 99 ~~~~~~d~~~~~~-~~~~fD~v~~~~~l~------~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~ 169 (215)
T 2zfu_A 99 PRVTVCDMAQVPL-EDESVDVAVFCLSLM------G--TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKL 169 (215)
T ss_dssp TTEEESCTTSCSC-CTTCEEEEEEESCCC------S--SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHT
T ss_pred ceEEEeccccCCC-CCCCEeEEEEehhcc------c--cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHC
Confidence 4678888877553 246899999855442 1 122222221122345888887743322 456778899999
Q ss_pred CcEEEEE
Q 009324 527 VMSIIII 533 (537)
Q Consensus 527 GFry~t~ 533 (537)
||+.+..
T Consensus 170 Gf~~~~~ 176 (215)
T 2zfu_A 170 GFKIVSK 176 (215)
T ss_dssp TEEEEEE
T ss_pred CCEEEEE
Confidence 9998764
No 75
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=47.16 E-value=7.2 Score=33.48 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=22.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPW 477 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPW 477 (537)
..+++.|+..+.-...++||+|++|||+
T Consensus 76 v~~~~~d~~~~~~~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 76 VTLIKDGHQNMDKYIDCPVKAVMFNLGY 103 (197)
T ss_dssp EEEECSCGGGGGGTCCSCEEEEEEEESB
T ss_pred eEEEECCHHHHhhhccCCceEEEEcCCc
Confidence 5789999887763344799999999998
No 76
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=47.05 E-value=26 Score=30.05 Aligned_cols=81 Identities=6% Similarity=-0.105 Sum_probs=47.9
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc--------------
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR-------------- 514 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr-------------- 514 (537)
...|+++|+..+++. .++||+|++.-.... .+.-....+.+-=...|.++|.+++=+.+.
T Consensus 85 ~~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~-----~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 158 (203)
T 3h2b_A 85 SVTFHHGTITDLSDS-PKRWAGLLAWYSLIH-----MGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAY 158 (203)
T ss_dssp TSEEECCCGGGGGGS-CCCEEEEEEESSSTT-----CCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEE
T ss_pred CCeEEeCcccccccC-CCCeEEEEehhhHhc-----CCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhc
Confidence 357899999887643 479999998533221 110111222211122344788776644221
Q ss_pred --chHHHHHHHhcCCcEEEEEEe
Q 009324 515 --AMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 515 --~Le~grElL~aWGFry~t~Iv 535 (537)
..+.-.++|+.=||+.+....
T Consensus 159 ~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 159 RWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp ECCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHHCCCcEEEEEe
Confidence 256778899999999987654
No 77
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=44.90 E-value=9.6 Score=34.49 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=32.0
Q ss_pred ceeeccCCcCCCC----CCCCccEEEECCCccccccCCCCCCCHHHH---hcCCccccCCCcEEEE
Q 009324 451 QWINCDIRNFRMD----ILGQFGVIMADPPWDIHMELPYGTMADDEM---RNLNVPALQTDGLIFL 509 (537)
Q Consensus 451 QwIncDVR~fD~s----iLGKFDVIlADPPWdi~m~l~Y~TMSddEI---kaLPV~~LqddglLFL 509 (537)
.|+++|+...... ..++||+|+++|||......+.. -..+.. .+-=...|.++|++++
T Consensus 148 ~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 148 AIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQ-VPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp EEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSC-CCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ceeecccccccccccccCCCCceEEEeCCCeecccccccc-ccccHHHHHHHHHHHhcCCCcEEEE
Confidence 3899998763210 22389999999999764321110 011111 1111233568998887
No 78
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=44.49 E-value=3.3 Score=39.28 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=20.5
Q ss_pred CceeeccCCcCCCCCC---CCccEEEECCCccc
Q 009324 450 PQWINCDIRNFRMDIL---GQFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~fD~siL---GKFDVIlADPPWdi 479 (537)
-+|++.|...+--... +.||+|++||||..
T Consensus 141 i~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 141 INLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp EEEEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred eEEEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 5788888876521111 68999999999965
No 79
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=44.07 E-value=51 Score=28.18 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=45.1
Q ss_pred ceeeccCCcCCCCCC-CCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC----------------
Q 009324 451 QWINCDIRNFRMDIL-GQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG---------------- 513 (537)
Q Consensus 451 QwIncDVR~fD~siL-GKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn---------------- 513 (537)
.++.+|+..++.... ++||+|++.-....- . +..++.+-=...|.++|.+++-+.+
T Consensus 76 ~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~ 148 (230)
T 3cc8_A 76 HVVLGDIETMDMPYEEEQFDCVIFGDVLEHL-----F--DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWT 148 (230)
T ss_dssp EEEESCTTTCCCCSCTTCEEEEEEESCGGGS-----S--CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCC
T ss_pred cEEEcchhhcCCCCCCCccCEEEECChhhhc-----C--CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCce
Confidence 688899987655543 689999985333211 0 1122222112334477877764322
Q ss_pred --------------cchHHHHHHHhcCCcEEEEEE
Q 009324 514 --------------RAMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 514 --------------r~Le~grElL~aWGFry~t~I 534 (537)
...+.-.++|+.-||+.+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 183 (230)
T 3cc8_A 149 YTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVD 183 (230)
T ss_dssp CBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEE
Confidence 124566778899999887543
No 80
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=43.70 E-value=17 Score=33.79 Aligned_cols=75 Identities=9% Similarity=-0.060 Sum_probs=50.9
Q ss_pred CCceeeccCCcCCCC--CCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch---HHHHHHH
Q 009324 449 EPQWINCDIRNFRMD--ILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM---ELGREWY 523 (537)
Q Consensus 449 PpQwIncDVR~fD~s--iLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L---e~grElL 523 (537)
.-.|+++|+..+... ..++||+|++.= ..+.+++...=..-|.++|.++++...... ....+.+
T Consensus 131 ~v~~~~~d~~~~~~~~~~~~~fD~I~s~a-----------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l 199 (249)
T 3g89_A 131 GARALWGRAEVLAREAGHREAYARAVARA-----------VAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPAL 199 (249)
T ss_dssp SEEEEECCHHHHTTSTTTTTCEEEEEEES-----------SCCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHH
T ss_pred ceEEEECcHHHhhcccccCCCceEEEECC-----------cCCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHH
Confidence 368899999877653 247999999831 123455555444456689998888765443 3466778
Q ss_pred hcCCcEEEEEE
Q 009324 524 MFLVMSIIIII 534 (537)
Q Consensus 524 ~aWGFry~t~I 534 (537)
+..||+...+.
T Consensus 200 ~~~G~~~~~~~ 210 (249)
T 3g89_A 200 ERLGGRLGEVL 210 (249)
T ss_dssp HHHTEEEEEEE
T ss_pred HHcCCeEEEEE
Confidence 88899887654
No 81
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=42.98 E-value=17 Score=31.46 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=21.1
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPW 477 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPW 477 (537)
..++.+|+..+++ ..++||+|++.++.
T Consensus 87 ~~~~~~d~~~~~~-~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 87 VEFIVGDARKLSF-EDKTFDYVIFIDSI 113 (227)
T ss_dssp CEEEECCTTSCCS-CTTCEEEEEEESCG
T ss_pred ceEEECchhcCCC-CCCcEEEEEEcCch
Confidence 5789999887653 23689999999883
No 82
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=41.38 E-value=4.3 Score=41.40 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=39.0
Q ss_pred CceeeccCCcCCC-CCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchH---HHHHHHhc
Q 009324 450 PQWINCDIRNFRM-DILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAME---LGREWYMF 525 (537)
Q Consensus 450 pQwIncDVR~fD~-siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le---~grElL~a 525 (537)
..+++.|++.+-- ...++||+|++||+ ++. .++...=+..|.++|+|++=+|..... ....++++
T Consensus 107 v~v~~~Da~~~l~~~~~~~fD~V~lDP~---------g~~--~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rk 175 (392)
T 3axs_A 107 YEIHGMEANFFLRKEWGFGFDYVDLDPF---------GTP--VPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRR 175 (392)
T ss_dssp EEEECSCHHHHHHSCCSSCEEEEEECCS---------SCC--HHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHH
T ss_pred EEEEeCCHHHHHHHhhCCCCcEEEECCC---------cCH--HHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHH
Confidence 4577888765421 22458999999992 221 233332233356889888877642210 23445555
Q ss_pred CCcE
Q 009324 526 LVMS 529 (537)
Q Consensus 526 WGFr 529 (537)
.|..
T Consensus 176 Yg~~ 179 (392)
T 3axs_A 176 YMAR 179 (392)
T ss_dssp HSSB
T ss_pred hCCc
Confidence 5543
No 83
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=41.12 E-value=4.5 Score=34.06 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=33.0
Q ss_pred CceeeccCCcCCCCC---CCCccEEEECCCccccccCCCCCCCHHHHhcCC-ccccCCCcEEEEecCC
Q 009324 450 PQWINCDIRNFRMDI---LGQFGVIMADPPWDIHMELPYGTMADDEMRNLN-VPALQTDGLIFLWVTG 513 (537)
Q Consensus 450 pQwIncDVR~fD~si---LGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLP-V~~LqddglLFLWVTn 513 (537)
..++++|+..+.... .++||+|++||||... ...+.+..+- ..-|.++|++++-+..
T Consensus 96 ~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 96 FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQ-------EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGC-------CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred eEEEECcHHHHHHHHHhcCCCCCEEEECCCCCch-------hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 468888887643211 4689999999996532 1112222221 2234578887765443
No 84
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=41.11 E-value=26 Score=30.91 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHH---HHhcCCccccCCCcEEEEecCC-----------cc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADD---EMRNLNVPALQTDGLIFLWVTG-----------RA 515 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSdd---EIkaLPV~~LqddglLFLWVTn-----------r~ 515 (537)
..|+.+|+..+. ..++||+|++--.... ++.+ .+.+-=...|.++|.+++.... ..
T Consensus 117 v~~~~~d~~~~~--~~~~fD~v~~~~~l~~--------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3lcc_A 117 FSFVKEDVFTWR--PTELFDLIFDYVFFCA--------IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVD 186 (235)
T ss_dssp EEEECCCTTTCC--CSSCEEEEEEESSTTT--------SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCC
T ss_pred eEEEECchhcCC--CCCCeeEEEEChhhhc--------CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCC
Confidence 578999998766 3459999997432221 2211 1111111234588888764432 12
Q ss_pred hHHHHHHHhcCCcEEEEEE
Q 009324 516 MELGREWYMFLVMSIIIII 534 (537)
Q Consensus 516 Le~grElL~aWGFry~t~I 534 (537)
.+.-.++|+.-||+.+...
T Consensus 187 ~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 187 VSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp HHHHHHHHGGGTEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEE
Confidence 4677889999999987653
No 85
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=40.77 E-value=7.8 Score=37.07 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=33.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcc-ccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWD-IHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWd-i~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr 514 (537)
-.++..|.+.+--...++||+|++|+|-. .... ..+...++.+.=-..|.++|++.+|+.++
T Consensus 146 v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~---~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 208 (296)
T 1inl_A 146 AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQG---GHLFTEEFYQACYDALKEDGVFSAETEDP 208 (296)
T ss_dssp EEEEESCHHHHGGGCSSCEEEEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred eEEEECcHHHHHhhCCCCceEEEEcCCCcccCch---hhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 46788887764222346899999998632 2111 01111233222123456899999998764
No 86
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=40.37 E-value=13 Score=31.77 Aligned_cols=77 Identities=13% Similarity=-0.016 Sum_probs=46.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC----------------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG---------------- 513 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn---------------- 513 (537)
..|+++|+..+++. .++||+|++......- -...++.+-=..-|.++|.+++....
T Consensus 95 ~~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 166 (219)
T 3dlc_A 95 IQIVQGDVHNIPIE-DNYADLIVSRGSVFFW-------EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRK 166 (219)
T ss_dssp EEEEECBTTBCSSC-TTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred eEEEEcCHHHCCCC-cccccEEEECchHhhc-------cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHh
Confidence 57899999887642 4799999998654431 11222221112234588988875211
Q ss_pred --------------cchHHHHHHHhcCCcEEEEEE
Q 009324 514 --------------RAMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 514 --------------r~Le~grElL~aWGFry~t~I 534 (537)
...+.-.++|+.-||+.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 167 NPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp CTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 011445678888999876554
No 87
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=39.96 E-value=14 Score=36.07 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=22.5
Q ss_pred CceeeccCCcCCCCC--CCCccEEEECCCcc
Q 009324 450 PQWINCDIRNFRMDI--LGQFGVIMADPPWD 478 (537)
Q Consensus 450 pQwIncDVR~fD~si--LGKFDVIlADPPWd 478 (537)
..+++.|.+.++... .++||+|++|||-.
T Consensus 155 v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcS 185 (309)
T 2b9e_A 155 CELAEEDFLAVSPSDPRYHEVHYILLDPSCS 185 (309)
T ss_dssp EEEEECCGGGSCTTCGGGTTEEEEEECCCCC
T ss_pred EEEEeCChHhcCccccccCCCCEEEEcCCcC
Confidence 577888988876432 36899999999974
No 88
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=39.86 E-value=29 Score=31.21 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=20.9
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECC
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADP 475 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADP 475 (537)
...|+++|+..+++ .++||+|++..
T Consensus 94 ~~~~~~~d~~~~~~--~~~fD~v~~~~ 118 (263)
T 3pfg_A 94 DAVLHHGDMRDFSL--GRRFSAVTCMF 118 (263)
T ss_dssp TSEEEECCTTTCCC--SCCEEEEEECT
T ss_pred CCEEEECChHHCCc--cCCcCEEEEcC
Confidence 35789999998877 68999999875
No 89
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=39.33 E-value=17 Score=36.38 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=34.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcC---CccccCCCcEEEEec
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNL---NVPALQTDGLIFLWV 511 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaL---PV~~LqddglLFLWV 511 (537)
..|+.+|+..+... .++||+|+++||+..... ...+++.++ =...|.++|.+++-+
T Consensus 282 v~~~~~D~~~~~~~-~~~fD~Ii~npp~~~~~~-----~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 282 AQALHSDVDEALTE-EARFDIIVTNPPFHVGGA-----VILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp CEEEECSTTTTSCT-TCCEEEEEECCCCCTTCS-----SCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEcchhhcccc-CCCeEEEEECCchhhccc-----ccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 68899999876553 479999999999875322 112222221 112344788877744
No 90
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=38.84 E-value=4.9 Score=38.80 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=37.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRA 515 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~ 515 (537)
-.++..|.+.+--...++||+|++|++.......+-..+...++.+.=-..|.++|++.+|+.++.
T Consensus 134 v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 199 (314)
T 1uir_A 134 AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMIL 199 (314)
T ss_dssp EEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEEC
T ss_pred eEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCcc
Confidence 467888888752113478999999987643100000011112222222234568999999976543
No 91
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=38.76 E-value=16 Score=33.81 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=46.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEec-CCcchHHHHHHHhcCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWV-TGRAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWV-Tnr~Le~grElL~aWGF 528 (537)
..++..|+... + ..++||+|+++++.+. ..++..-=...|.++|.+++-. .....+...+.++++||
T Consensus 169 v~~~~~d~~~~-~-~~~~fD~Vv~n~~~~~----------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf 236 (254)
T 2nxc_A 169 PRFLEGSLEAA-L-PFGPFDLLVANLYAEL----------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGF 236 (254)
T ss_dssp CEEEESCHHHH-G-GGCCEEEEEEECCHHH----------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEECChhhc-C-cCCCCCEEEECCcHHH----------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCC
Confidence 46677777652 1 2468999999876432 1111111122244788887743 34556778889999999
Q ss_pred EEEEEEe
Q 009324 529 SIIIIIV 535 (537)
Q Consensus 529 ry~t~Iv 535 (537)
+.+....
T Consensus 237 ~~~~~~~ 243 (254)
T 2nxc_A 237 RPLEEAA 243 (254)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9876543
No 92
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=38.69 E-value=13 Score=35.63 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=19.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
..++++|+..+++ ++||+|++||||.+.
T Consensus 92 v~~~~~D~~~~~~---~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 92 LEVYEGDAIKTVF---PKFDVCTANIPYKIS 119 (299)
T ss_dssp EEC----CCSSCC---CCCSEEEEECCGGGH
T ss_pred eEEEECchhhCCc---ccCCEEEEcCCcccc
Confidence 5788999988775 489999999998754
No 93
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=38.16 E-value=21 Score=31.73 Aligned_cols=71 Identities=8% Similarity=-0.052 Sum_probs=44.9
Q ss_pred CceeeccC-CcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCc
Q 009324 450 PQWINCDI-RNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVM 528 (537)
Q Consensus 450 pQwIncDV-R~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGF 528 (537)
..|+.+|+ ..+.+...++||+|++.+..... ..++. ..|.++|.++........+...+.++.-||
T Consensus 93 ~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~~---------l~~~~----~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf 159 (226)
T 3m33_A 93 ADVYEWNGKGELPAGLGAPFGLIVSRRGPTSV---------ILRLP----ELAAPDAHFLYVGPRLNVPEVPERLAAVGW 159 (226)
T ss_dssp SEEEECCSCSSCCTTCCCCEEEEEEESCCSGG---------GGGHH----HHEEEEEEEEEEESSSCCTHHHHHHHHTTC
T ss_pred ceEEEcchhhccCCcCCCCEEEEEeCCCHHHH---------HHHHH----HHcCCCcEEEEeCCcCCHHHHHHHHHHCCC
Confidence 57899999 45555446799999987321110 11111 123478888844444456677889999999
Q ss_pred EEEEE
Q 009324 529 SIIII 533 (537)
Q Consensus 529 ry~t~ 533 (537)
+....
T Consensus 160 ~~~~~ 164 (226)
T 3m33_A 160 DIVAE 164 (226)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 87654
No 94
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=38.07 E-value=35 Score=29.71 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=18.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPW 477 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPW 477 (537)
..|+++|+...++ ..++||+|++.-..
T Consensus 86 v~~~~~d~~~~~~-~~~~fD~v~~~~~l 112 (217)
T 3jwh_A 86 LQLIQGALTYQDK-RFHGYDAATVIEVI 112 (217)
T ss_dssp EEEEECCTTSCCG-GGCSCSEEEEESCG
T ss_pred eEEEeCCcccccc-cCCCcCEEeeHHHH
Confidence 5788999865543 23799999975433
No 95
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=37.99 E-value=33 Score=30.51 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=19.6
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPP 476 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPP 476 (537)
..++++|+..+++ ..++||+|++.-.
T Consensus 92 ~~~~~~d~~~~~~-~~~~fD~v~~~~~ 117 (253)
T 3g5l_A 92 VCYEQKAIEDIAI-EPDAYNVVLSSLA 117 (253)
T ss_dssp EEEEECCGGGCCC-CTTCEEEEEEESC
T ss_pred eEEEEcchhhCCC-CCCCeEEEEEchh
Confidence 5789999987664 2479999998643
No 96
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=37.12 E-value=7.1 Score=38.04 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=35.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECC--CccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADP--PWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADP--PWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr 514 (537)
-.++..|.+.+--...++||+|++|+ ||... ..-| + .++.+.=-..|.++|++.++..++
T Consensus 172 v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~-~~l~---~-~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 172 VNVFIEDASKFLENVTNTYDVIIVDSSDPIGPA-ETLF---N-QNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EEEEESCHHHHHHHCCSCEEEEEEECCCSSSGG-GGGS---S-HHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EEEEEccHHHHHhhcCCCceEEEECCcCCCCcc-hhhh---H-HHHHHHHHHhcCCCcEEEEEcCCc
Confidence 46788888764212246899999999 44211 0011 1 233222224456899999998764
No 97
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=36.97 E-value=12 Score=30.72 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=32.9
Q ss_pred CCceeeccCCcCC--CCC-CCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecC
Q 009324 449 EPQWINCDIRNFR--MDI-LGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVT 512 (537)
Q Consensus 449 PpQwIncDVR~fD--~si-LGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVT 512 (537)
...+++.|+..+. +.. .++||+|++||||. .. + .-..+.+.+ ..-|.++|.+++-+.
T Consensus 89 ~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~---~-~~~~~~~~~--~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 89 GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MD---L-AALFGELLA--SGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SC---T-THHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred ceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hh---H-HHHHHHHHh--hcccCCCcEEEEEeC
Confidence 4577888877642 111 24899999999986 21 1 112333333 233458888766544
No 98
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=36.79 E-value=29 Score=31.72 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=45.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC----------------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG---------------- 513 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn---------------- 513 (537)
..++.+|+..+.-...++||+|++.-....- -...++.+-=..-|.++|.+++-+.+
T Consensus 119 v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 191 (285)
T 4htf_A 119 MQFIHCAAQDVASHLETPVDLILFHAVLEWV-------ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDY 191 (285)
T ss_dssp EEEEESCGGGTGGGCSSCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHH
T ss_pred eEEEEcCHHHhhhhcCCCceEEEECchhhcc-------cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHH
Confidence 4689999988763345899999986443321 01122211111224477877764422
Q ss_pred ------------------cchHHHHHHHhcCCcEEEEE
Q 009324 514 ------------------RAMELGREWYMFLVMSIIII 533 (537)
Q Consensus 514 ------------------r~Le~grElL~aWGFry~t~ 533 (537)
...+.-.++|+.-||+++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~ 229 (285)
T 4htf_A 192 VQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGK 229 (285)
T ss_dssp HHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEE
T ss_pred HhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeee
Confidence 11356677899999998754
No 99
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=36.66 E-value=27 Score=31.48 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=21.8
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPP 476 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPP 476 (537)
..++.+|+..+.+...++||+|++.-.
T Consensus 116 v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 116 VFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp EEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred EEEEECCccccccCCCCCcCEEEECch
Confidence 478999999887755679999998744
No 100
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=36.64 E-value=14 Score=31.38 Aligned_cols=31 Identities=6% Similarity=-0.054 Sum_probs=20.5
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDI 479 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi 479 (537)
...|++.|...++-...++||+|+++++|--
T Consensus 71 ~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 71 NTELILDGHENLDHYVREPIRAAIFNLGYLP 101 (185)
T ss_dssp CEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred cEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence 3567887777665333578999999987643
No 101
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=35.06 E-value=46 Score=29.17 Aligned_cols=76 Identities=8% Similarity=0.001 Sum_probs=44.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc---------------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR--------------- 514 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr--------------- 514 (537)
..++.+|+..+++ ..++||+|++.-....- . +..++.+-=...|.++|.+++-+.++
T Consensus 86 ~~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~-----~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 157 (219)
T 1vlm_A 86 VFVLKGTAENLPL-KDESFDFALMVTTICFV-----D--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKS 157 (219)
T ss_dssp CEEEECBTTBCCS-CTTCEEEEEEESCGGGS-----S--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-
T ss_pred CEEEEcccccCCC-CCCCeeEEEEcchHhhc-----c--CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCc
Confidence 5688899887664 24689999986443221 0 11222111112244778776643321
Q ss_pred ---------chHHHHHHHhcCCcEEEEE
Q 009324 515 ---------AMELGREWYMFLVMSIIII 533 (537)
Q Consensus 515 ---------~Le~grElL~aWGFry~t~ 533 (537)
..+.-.++|+.-||+.+..
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 158 VFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred chhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 2355677899999998754
No 102
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=34.98 E-value=18 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.7
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
..++++|+..+++...++| +|+++||+.+.
T Consensus 77 v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 77 VTLIHQDILQFQFPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp EEECCSCCTTTTCCCSSEE-EEEEECCSSSC
T ss_pred eEEEECChhhcCcccCCCc-EEEEeCCcccc
Confidence 4789999999887544689 89999998764
No 103
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=33.85 E-value=10 Score=39.33 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=23.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWD 478 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWd 478 (537)
..+++.|.+.++....++||+|++|||-.
T Consensus 170 v~~~~~D~~~~~~~~~~~fD~Il~D~PcS 198 (479)
T 2frx_A 170 VALTHFDGRVFGAAVPEMFDAILLDAPCS 198 (479)
T ss_dssp EEEECCCSTTHHHHSTTCEEEEEEECCCC
T ss_pred EEEEeCCHHHhhhhccccCCEEEECCCcC
Confidence 46788898887643457899999999974
No 104
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=33.81 E-value=45 Score=28.95 Aligned_cols=26 Identities=0% Similarity=-0.118 Sum_probs=18.3
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPP 476 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPP 476 (537)
..|+++|+..+++ ..++||+|++.-.
T Consensus 86 v~~~~~d~~~~~~-~~~~fD~V~~~~~ 111 (219)
T 3jwg_A 86 ISLFQSSLVYRDK-RFSGYDAATVIEV 111 (219)
T ss_dssp EEEEECCSSSCCG-GGTTCSEEEEESC
T ss_pred eEEEeCccccccc-ccCCCCEEEEHHH
Confidence 5788999855443 2479999997533
No 105
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=33.72 E-value=21 Score=38.73 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=23.4
Q ss_pred CceeeccCCcCCCCCC-CCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDIL-GQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siL-GKFDVIlADPPWdi~ 480 (537)
..|+++|+..+..... ++||+|+++|||-..
T Consensus 285 i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R 316 (703)
T 3v97_A 285 ITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER 316 (703)
T ss_dssp EEEEECCGGGCCCSCTTCCCCEEEECCCCCC-
T ss_pred eEEEECChhhCccccccCCCCEEEeCCCcccc
Confidence 4788999988754332 389999999999654
No 106
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=33.17 E-value=41 Score=31.68 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=45.4
Q ss_pred CceeeccCCcCCC--CCCCCccEEEECCCccccccCCCCCCCHHHHhcCCcc-ccCCCcEEEEecCCcc----------h
Q 009324 450 PQWINCDIRNFRM--DILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVP-ALQTDGLIFLWVTGRA----------M 516 (537)
Q Consensus 450 pQwIncDVR~fD~--siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~-~LqddglLFLWVTnr~----------L 516 (537)
-.++.+|.+..+. ...++||+|++|-+- -...++..--+. -|.++|.+.+-+-.+. .
T Consensus 127 v~~i~~Da~~~~~~~~~~~~~D~I~~d~a~----------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~ 196 (232)
T 3id6_C 127 IFPLLADARFPQSYKSVVENVDVLYVDIAQ----------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIY 196 (232)
T ss_dssp EEEEECCTTCGGGTTTTCCCEEEEEECCCC----------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSST
T ss_pred eEEEEcccccchhhhccccceEEEEecCCC----------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHH
Confidence 4678899987653 234799999999542 122222221223 3557887766542221 2
Q ss_pred HHHHHHHhcCCcEEEEEEe
Q 009324 517 ELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 517 e~grElL~aWGFry~t~Iv 535 (537)
+...+.|++=||+....+.
T Consensus 197 ~~~~~~L~~~gf~~~~~~~ 215 (232)
T 3id6_C 197 KTEVEKLENSNFETIQIIN 215 (232)
T ss_dssp THHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEec
Confidence 4556677777999988764
No 107
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=32.83 E-value=21 Score=31.91 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=48.9
Q ss_pred CceeeccCCcCC-CCCCCCccEEEEC--CCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcch-HHHHHHHhc
Q 009324 450 PQWINCDIRNFR-MDILGQFGVIMAD--PPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM-ELGREWYMF 525 (537)
Q Consensus 450 pQwIncDVR~fD-~siLGKFDVIlAD--PPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~L-e~grElL~a 525 (537)
-.++++|+..++ +-..+.||.|++. .||...... ...+...++.+.=-.-|.++|.+++-+.+..+ +...+.|+.
T Consensus 90 v~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~-~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 168 (213)
T 2fca_A 90 VKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHE-KRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE 168 (213)
T ss_dssp EEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGG-GGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCcccc-ccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 578999998754 1124679999875 356542211 11122223322212335689999988766543 566788888
Q ss_pred CCcEEEE
Q 009324 526 LVMSIII 532 (537)
Q Consensus 526 WGFry~t 532 (537)
-||+...
T Consensus 169 ~g~~~~~ 175 (213)
T 2fca_A 169 YGLLLTY 175 (213)
T ss_dssp HTCEEEE
T ss_pred CCCcccc
Confidence 8987654
No 108
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=32.81 E-value=5.9 Score=37.04 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCceeeccCCcCCCCC---CCCccEEEECCCccccc-cCCCCCCCHHHHhcCC----------ccccCCCcEEEE-ecCC
Q 009324 449 EPQWINCDIRNFRMDI---LGQFGVIMADPPWDIHM-ELPYGTMADDEMRNLN----------VPALQTDGLIFL-WVTG 513 (537)
Q Consensus 449 PpQwIncDVR~fD~si---LGKFDVIlADPPWdi~m-~l~Y~TMSddEIkaLP----------V~~LqddglLFL-WVTn 513 (537)
...+++.|.+.+.... .++||+|++|||..-.. -.+-+.++.+++..+. ..-|.++|.+.. -|+-
T Consensus 135 ~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 135 NTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp SEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 3578888888776432 56899999999985421 0111245555554332 112336676533 3442
Q ss_pred c---chHHHHHHH-hcCCcEEE
Q 009324 514 R---AMELGREWY-MFLVMSII 531 (537)
Q Consensus 514 r---~Le~grElL-~aWGFry~ 531 (537)
. .-+...+++ +.-+|+..
T Consensus 215 ~~~ene~~v~~~l~~~~~~~~~ 236 (274)
T 3ajd_A 215 EVEENEEVIKYILQKRNDVELI 236 (274)
T ss_dssp CTTSSHHHHHHHHHHCSSEEEE
T ss_pred ChHHhHHHHHHHHHhCCCcEEe
Confidence 2 123445566 44567664
No 109
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=31.50 E-value=23 Score=35.92 Aligned_cols=31 Identities=16% Similarity=-0.018 Sum_probs=23.3
Q ss_pred CCceeeccCCcCCCCCC-CCccEEEECCCccc
Q 009324 449 EPQWINCDIRNFRMDIL-GQFGVIMADPPWDI 479 (537)
Q Consensus 449 PpQwIncDVR~fD~siL-GKFDVIlADPPWdi 479 (537)
...+++.|.+.++-... ++||+|++|||..-
T Consensus 311 ~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg 342 (450)
T 2yxl_A 311 IVKPLVKDARKAPEIIGEEVADKVLLDAPCTS 342 (450)
T ss_dssp SEEEECSCTTCCSSSSCSSCEEEEEEECCCCC
T ss_pred cEEEEEcChhhcchhhccCCCCEEEEcCCCCC
Confidence 35788889887763223 68999999999854
No 110
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=31.44 E-value=52 Score=29.21 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=46.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHh---cCCccccCCCcEEEEecC--------------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMR---NLNVPALQTDGLIFLWVT-------------- 512 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIk---aLPV~~LqddglLFLWVT-------------- 512 (537)
..|+.+|+..+.+. .++||+|+++-... .+.++++. +-=...|.++|.+++-..
T Consensus 130 ~~~~~~d~~~~~~~-~~~fD~v~~~~~l~--------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 200 (241)
T 2ex4_A 130 RNYFCCGLQDFTPE-PDSYDVIWIQWVIG--------HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSS 200 (241)
T ss_dssp EEEEECCGGGCCCC-SSCEEEEEEESCGG--------GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTE
T ss_pred EEEEEcChhhcCCC-CCCEEEEEEcchhh--------hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCc
Confidence 46889998877653 45899999873221 13333321 111122447888777211
Q ss_pred -CcchHHHHHHHhcCCcEEEEEE
Q 009324 513 -GRAMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 513 -nr~Le~grElL~aWGFry~t~I 534 (537)
.+..+.-+++|+.-||+.+...
T Consensus 201 ~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 201 VCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp EEEBHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCHHHHHHHHHHcCCeEEEee
Confidence 1145677889999999988654
No 111
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=31.39 E-value=53 Score=30.71 Aligned_cols=60 Identities=12% Similarity=-0.117 Sum_probs=33.9
Q ss_pred CCccEEEE-CCCccccccCCCCCCCHHHHhcCCccccC---C--CcEEEEecCC-cc-----hHHHHHHHhcCC-cEEEE
Q 009324 466 GQFGVIMA-DPPWDIHMELPYGTMADDEMRNLNVPALQ---T--DGLIFLWVTG-RA-----MELGREWYMFLV-MSIII 532 (537)
Q Consensus 466 GKFDVIlA-DPPWdi~m~l~Y~TMSddEIkaLPV~~Lq---d--dglLFLWVTn-r~-----Le~grElL~aWG-Fry~t 532 (537)
++||+|++ |..+.... ...+.+-=-.-|. + +|.+++-+.. +. ...-++.++.+| |++..
T Consensus 162 ~~fD~Ii~~dvl~~~~~--------~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 162 QRFQVVLLADLLSFHQA--------HDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp SSBSEEEEESCCSCGGG--------HHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEeCcccChHH--------HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence 68999987 88765321 1222111011244 6 8876654443 21 345567889999 99875
Q ss_pred E
Q 009324 533 I 533 (537)
Q Consensus 533 ~ 533 (537)
.
T Consensus 234 ~ 234 (281)
T 3bzb_A 234 W 234 (281)
T ss_dssp E
T ss_pred e
Confidence 5
No 112
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=31.11 E-value=48 Score=28.29 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=46.2
Q ss_pred CCceeeccCCcC---CCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCC------------
Q 009324 449 EPQWINCDIRNF---RMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTG------------ 513 (537)
Q Consensus 449 PpQwIncDVR~f---D~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTn------------ 513 (537)
...++.+|+..+ .+...++||+|++..... ... ..--..++. ..|.++|.+++-+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~---~~~~l~~~~----~~L~pgG~l~~~~~~~~~~~~~~~~~~ 166 (227)
T 3e8s_A 95 AGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD---IIELLSAMR----TLLVPGGALVIQTLHPWSVADGDYQDG 166 (227)
T ss_dssp SSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC---CHHHHHHHH----HTEEEEEEEEEEECCTTTTCTTCCSCE
T ss_pred ccccchhhHHhhcccccccCCCccEEEECchhh-hhh---HHHHHHHHH----HHhCCCeEEEEEecCccccCccccccc
Confidence 356788888877 333445799999976655 110 000111221 123366666652211
Q ss_pred --------------------cchHHHHHHHhcCCcEEEEEEe
Q 009324 514 --------------------RAMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 514 --------------------r~Le~grElL~aWGFry~t~Iv 535 (537)
...+.-.++|+.=||+.+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 167 WREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp EEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred cchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 1457788899999999987653
No 113
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=30.02 E-value=16 Score=38.34 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=22.0
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHM 481 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m 481 (537)
+.+++.|.-..+....++||+|+++|||....
T Consensus 244 ~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~ 275 (541)
T 2ar0_A 244 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 275 (541)
T ss_dssp BSEEESCTTSHHHHTSCCEEEEEECCCCTTCS
T ss_pred CCeEeCCCcccccccccCCeEEEECCCccccc
Confidence 45566665444433457999999999997653
No 114
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=29.88 E-value=38 Score=29.25 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcC--Cc-cccCCCcEEEEecCC------------
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNL--NV-PALQTDGLIFLWVTG------------ 513 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaL--PV-~~LqddglLFLWVTn------------ 513 (537)
...+++.|+..++ ..++||+|++...... +..+++..+ -+ ..|.++|.+++-+..
T Consensus 86 ~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~--------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 155 (211)
T 3e23_A 86 GRPVRTMLFHQLD--AIDAYDAVWAHACLLH--------VPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARY 155 (211)
T ss_dssp TSCCEECCGGGCC--CCSCEEEEEECSCGGG--------SCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCE
T ss_pred CCceEEeeeccCC--CCCcEEEEEecCchhh--------cCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchh
Confidence 3567888888777 5679999998654432 333332211 01 224477877664332
Q ss_pred ---cchHHHHHHHhcCC-cEEEEEE
Q 009324 514 ---RAMELGREWYMFLV-MSIIIII 534 (537)
Q Consensus 514 ---r~Le~grElL~aWG-Fry~t~I 534 (537)
...+.-.++|+.=| |+.+...
T Consensus 156 ~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 156 YNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp ECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred ccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 13567778999999 9887654
No 115
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=29.08 E-value=9.4 Score=37.60 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=35.0
Q ss_pred CceeeccCCcCCCCC---CCCccEEEECCCccccccCCCCC--CCHHHHhcCCccccCCCcEEEEecCCc
Q 009324 450 PQWINCDIRNFRMDI---LGQFGVIMADPPWDIHMELPYGT--MADDEMRNLNVPALQTDGLIFLWVTGR 514 (537)
Q Consensus 450 pQwIncDVR~fD~si---LGKFDVIlADPPWdi~m~l~Y~T--MSddEIkaLPV~~LqddglLFLWVTnr 514 (537)
..|++.|+..+-... .++||+|++|||........... -...++...-...|.++|++++-+...
T Consensus 259 ~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 259 VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 578888887653221 35899999999963321100000 001122222233455888877765443
No 116
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.05 E-value=22 Score=34.20 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=28.2
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHM 481 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m 481 (537)
-.++++|+..+|+..+..|++|++.+|+.+..
T Consensus 93 v~vi~~D~l~~~~~~~~~~~~iv~NlPy~iss 124 (271)
T 3fut_A 93 VRLVFQDALLYPWEEVPQGSLLVANLPYHIAT 124 (271)
T ss_dssp EEEEESCGGGSCGGGSCTTEEEEEEECSSCCH
T ss_pred EEEEECChhhCChhhccCccEEEecCcccccH
Confidence 57999999999998777899999999998853
No 117
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=28.80 E-value=25 Score=34.63 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=49.8
Q ss_pred eeccCCcCCCCCCCCccEEEECCCccccccCC--------CCCCCHHHHhcCCccccCCCcEEEEecCC-------cchH
Q 009324 453 INCDIRNFRMDILGQFGVIMADPPWDIHMELP--------YGTMADDEMRNLNVPALQTDGLIFLWVTG-------RAME 517 (537)
Q Consensus 453 IncDVR~fD~siLGKFDVIlADPPWdi~m~l~--------Y~TMSddEIkaLPV~~LqddglLFLWVTn-------r~Le 517 (537)
.++||+.++...+..+|+|+++||.+-..... -+++ ..++..+ |..+.+.-|++==|.+ ..++
T Consensus 57 ~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~~~g~~d~r~~L-~~~~~r~-i~~~~P~~~~~ENV~gl~~~~~~~~~~ 134 (327)
T 2c7p_A 57 PEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTL-FFDIARI-VREKKPKVVFMENVKNFASHDNGNTLE 134 (327)
T ss_dssp CBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSCCCGGGSTTSCH-HHHHHHH-HHHHCCSEEEEEEEGGGGTGGGGHHHH
T ss_pred CcCCHHHcCHhhCCCCCEEEECCCCCCcchhcccCCCcchhhHH-HHHHHHH-HHhccCcEEEEeCcHHHHhccccHHHH
Confidence 37999999888788899999999998654211 1111 1122211 2334455444433332 2356
Q ss_pred HHHHHHhcCCcEEEEEEe
Q 009324 518 LGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 518 ~grElL~aWGFry~t~Iv 535 (537)
.-++.|+..||.+...++
T Consensus 135 ~i~~~l~~~GY~v~~~vl 152 (327)
T 2c7p_A 135 VVKNTMNELDYSFHAKVL 152 (327)
T ss_dssp HHHHHHHHTTBCCEEEEE
T ss_pred HHHHHHHhCCCEEEEEEE
Confidence 677888999998776654
No 118
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=28.66 E-value=78 Score=26.97 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=18.9
Q ss_pred CceeeccCCcCCCCCCCCccEEEECC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADP 475 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADP 475 (537)
..|+++|+..+ ...++||+|++.-
T Consensus 92 ~~~~~~d~~~~--~~~~~~D~v~~~~ 115 (218)
T 3ou2_A 92 VEFRQQDLFDW--TPDRQWDAVFFAH 115 (218)
T ss_dssp EEEEECCTTSC--CCSSCEEEEEEES
T ss_pred eEEEecccccC--CCCCceeEEEEec
Confidence 57899999876 4457999999853
No 119
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=28.57 E-value=10 Score=37.41 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=21.8
Q ss_pred CceeeccCCcCCCC---CCCCccEEEECCCccc
Q 009324 450 PQWINCDIRNFRMD---ILGQFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~fD~s---iLGKFDVIlADPPWdi 479 (537)
..|++.|+..+... ..++||+|++|||...
T Consensus 269 v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~ 301 (396)
T 2as0_A 269 MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFV 301 (396)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC
T ss_pred ceEEECCHHHHHHHHHhhCCCCCEEEECCCCCC
Confidence 57889998765322 1468999999999643
No 120
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=28.02 E-value=35 Score=34.32 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
...+++.|....+.. ++||+|+++|||...
T Consensus 237 ~~~i~~gD~l~~~~~--~~fD~Iv~NPPf~~~ 266 (445)
T 2okc_A 237 RSPIVCEDSLEKEPS--TLVDVILANPPFGTR 266 (445)
T ss_dssp CCSEEECCTTTSCCS--SCEEEEEECCCSSCC
T ss_pred CCCEeeCCCCCCccc--CCcCEEEECCCCCCc
Confidence 356677776655543 499999999999764
No 121
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=27.68 E-value=33 Score=36.30 Aligned_cols=67 Identities=13% Similarity=0.250 Sum_probs=38.3
Q ss_pred CceeeccCCcCCCC--CCCCccEEEECCCcccccc--------C---CCC---CCCHHH--HhcCCccccC-CCcEEEEe
Q 009324 450 PQWINCDIRNFRMD--ILGQFGVIMADPPWDIHME--------L---PYG---TMADDE--MRNLNVPALQ-TDGLIFLW 510 (537)
Q Consensus 450 pQwIncDVR~fD~s--iLGKFDVIlADPPWdi~m~--------l---~Y~---TMSddE--IkaLPV~~Lq-ddglLFLW 510 (537)
..+++.|.-..||. ..++||+|+++|||..... . .|+ .-+..+ ....-+..|. ++|.+.+-
T Consensus 278 ~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~V 357 (542)
T 3lkd_A 278 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIV 357 (542)
T ss_dssp EEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEE
T ss_pred cceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEE
Confidence 45677777666543 3579999999999964321 1 133 111111 1222234566 78888776
Q ss_pred cCCcch
Q 009324 511 VTGRAM 516 (537)
Q Consensus 511 VTnr~L 516 (537)
+.+..|
T Consensus 358 lP~g~L 363 (542)
T 3lkd_A 358 LPHGVL 363 (542)
T ss_dssp EETHHH
T ss_pred ecchHh
Confidence 665544
No 122
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=27.09 E-value=96 Score=27.06 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=46.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCc--------------
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGR-------------- 514 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr-------------- 514 (537)
...++.+|+..+++. .++||+|++--.... - -...++.+-=...|.++|.+++-+.++
T Consensus 99 ~~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~------~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 170 (242)
T 3l8d_A 99 DLSFIKGDLSSLPFE-NEQFEAIMAINSLEW------T-EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG 170 (242)
T ss_dssp TEEEEECBTTBCSSC-TTCEEEEEEESCTTS------S-SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGT
T ss_pred CceEEEcchhcCCCC-CCCccEEEEcChHhh------c-cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhcc
Confidence 357899999987642 579999997433221 1 111222111112244788877754221
Q ss_pred --------chHHHHHHHhcCCcEEEEEE
Q 009324 515 --------AMELGREWYMFLVMSIIIII 534 (537)
Q Consensus 515 --------~Le~grElL~aWGFry~t~I 534 (537)
..+.-.++|+.-||+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 171 KDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp CCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 12456789999999998754
No 123
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=26.89 E-value=38 Score=32.87 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=44.8
Q ss_pred Ccee--eccCCcCCCCCCCCccEEEECCCcccc--cc-C-CCC--CCCHHHHhcCC--ccccCCCcEEEEecCCcchHHH
Q 009324 450 PQWI--NCDIRNFRMDILGQFGVIMADPPWDIH--ME-L-PYG--TMADDEMRNLN--VPALQTDGLIFLWVTGRAMELG 519 (537)
Q Consensus 450 pQwI--ncDVR~fD~siLGKFDVIlADPPWdi~--m~-l-~Y~--TMSddEIkaLP--V~~LqddglLFLWVTnr~Le~g 519 (537)
.++. ++|-+.+ +....+=++||+|||...- .. . .|. .++++|=..|= +..+...|.-||+.-+.. +.-
T Consensus 169 v~i~~~~~Df~~~-i~~~~~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~g~~~~lS~~d~-~~i 246 (284)
T 2dpm_A 169 NQLEIKVGDFEKA-IVDVRTGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSS-ALV 246 (284)
T ss_dssp SEEEEEESCGGGG-GTTCCTTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTTTCEEEEEEESC-HHH
T ss_pred CEEEEeCCCHHHH-HHhcCCCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCC-HHH
Confidence 4555 6666554 2222556899999999652 22 2 575 46776544431 233334466777776553 777
Q ss_pred HHHHhcCC
Q 009324 520 REWYMFLV 527 (537)
Q Consensus 520 rElL~aWG 527 (537)
+++.+.|-
T Consensus 247 ~~ly~~~~ 254 (284)
T 2dpm_A 247 EELYKDFN 254 (284)
T ss_dssp HHHTTTSE
T ss_pred HHHHcCCe
Confidence 88887653
No 124
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=26.60 E-value=33 Score=33.01 Aligned_cols=77 Identities=9% Similarity=0.026 Sum_probs=40.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccc----cCCCCCC-----CHH--HHhcCCccccCCCcEEEEec-----CC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHM----ELPYGTM-----ADD--EMRNLNVPALQTDGLIFLWV-----TG 513 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m----~l~Y~TM-----Sdd--EIkaLPV~~LqddglLFLWV-----Tn 513 (537)
..+++.|....+ ..++||+|+++|||.+.. ...|..- .+. .+..-=+..|.++|.+++=+ ++
T Consensus 186 ~~i~~~D~l~~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~ 263 (344)
T 2f8l_A 186 MTLLHQDGLANL--LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT 263 (344)
T ss_dssp CEEEESCTTSCC--CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred ceEEECCCCCcc--ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCC
Confidence 566777754422 347899999999974421 1122211 111 11111123345778776665 34
Q ss_pred cchHHHHHHHhcCCc
Q 009324 514 RAMELGREWYMFLVM 528 (537)
Q Consensus 514 r~Le~grElL~aWGF 528 (537)
.....-++.|..-|+
T Consensus 264 ~~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 264 SDFAKVDKFIKKNGH 278 (344)
T ss_dssp TTHHHHHHHHHHHEE
T ss_pred chHHHHHHHHHhCCe
Confidence 444556666655555
No 125
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=25.35 E-value=14 Score=37.12 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=31.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecC
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVT 512 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVT 512 (537)
..+++.|++.+--...++||+|++|||-.. .++..-=+..|.++|++++=+|
T Consensus 114 i~v~~~Da~~~~~~~~~~fD~I~lDP~~~~-----------~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 114 IVINHDDANRLMAERHRYFHFIDLDPFGSP-----------MEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp EEEEESCHHHHHHHSTTCEEEEEECCSSCC-----------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEEcCcHHHHHHhccCCCCEEEeCCCCCH-----------HHHHHHHHHhcCCCCEEEEEee
Confidence 467888887653222358999999998321 2222211233447788877655
No 126
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=25.05 E-value=18 Score=36.58 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=33.1
Q ss_pred ceeeccCCcCCCCCCCCccEEEECCCccccccCCCCC--CCHHHHhcCCccccCCCcEEEEecCCcc
Q 009324 451 QWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGT--MADDEMRNLNVPALQTDGLIFLWVTGRA 515 (537)
Q Consensus 451 QwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~T--MSddEIkaLPV~~LqddglLFLWVTnr~ 515 (537)
.+++.|+..+--...++||+|++|||.-......-.. -...++...=..-|.++|.|++-.....
T Consensus 264 ~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 264 DIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp EEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 5668888765222245699999999973321110000 0011222222334558888875544433
No 127
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=24.64 E-value=37 Score=32.16 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.6
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
..++++|+..+++. .||+|++++||.+.
T Consensus 79 v~~~~~D~~~~~~~---~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 79 LQVLVGDVLKTDLP---FFDTCVANLPYQIS 106 (285)
T ss_dssp EEEEESCTTTSCCC---CCSEEEEECCGGGH
T ss_pred eEEEEcceecccch---hhcEEEEecCcccc
Confidence 47899999888764 79999999999764
No 128
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=24.63 E-value=34 Score=33.42 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCcccc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIH 480 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~ 480 (537)
...++++|+..+++.. ..||+|++++|+.+.
T Consensus 97 ~v~vi~gD~l~~~~~~-~~fD~Iv~NlPy~is 127 (295)
T 3gru_A 97 NIEIIWGDALKVDLNK-LDFNKVVANLPYQIS 127 (295)
T ss_dssp SEEEEESCTTTSCGGG-SCCSEEEEECCGGGH
T ss_pred CeEEEECchhhCCccc-CCccEEEEeCccccc
Confidence 3579999999998765 479999999999765
No 129
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=23.86 E-value=20 Score=32.27 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=32.0
Q ss_pred CceeeccCCcCCC-CCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEE
Q 009324 450 PQWINCDIRNFRM-DILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFL 509 (537)
Q Consensus 450 pQwIncDVR~fD~-siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFL 509 (537)
..|+..|...+.. ...++||+|++|.++... .++.+.=...|.++|++++
T Consensus 124 v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~----------~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 124 VRIIEGNALEQFENVNDKVYDMIFIDAAKAQS----------KKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp EEEEESCGGGCHHHHTTSCEEEEEEETTSSSH----------HHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCHHHHHHhhccCCccEEEEcCcHHHH----------HHHHHHHHHhcCCCeEEEE
Confidence 5788888876532 235799999999875441 1222222244568999888
No 130
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=23.48 E-value=44 Score=28.19 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=42.4
Q ss_pred CceeeccCCcCCCC--CCCCccEEEECCCccccccCCCCCCCHHHH-hcCCccccCCCcEEEEecC----------Ccch
Q 009324 450 PQWINCDIRNFRMD--ILGQFGVIMADPPWDIHMELPYGTMADDEM-RNLNVPALQTDGLIFLWVT----------GRAM 516 (537)
Q Consensus 450 pQwIncDVR~fD~s--iLGKFDVIlADPPWdi~m~l~Y~TMSddEI-kaLPV~~LqddglLFLWVT----------nr~L 516 (537)
..|+..|+..+++. ..++||+|++- ..++|-.-+.+++ ..+ -.-|.++|.+++... .+..
T Consensus 44 ~~~~~~d~~~~~~~~~~~~~fD~V~~~------~~l~~~~~~~~~~l~~~-~r~LkpgG~l~~~~~~~~~~~~~~~~~~~ 116 (176)
T 2ld4_A 44 GRVSVENIKQLLQSAHKESSFDIILSG------LVPGSTTLHSAEILAEI-ARILRPGGCLFLKEPVETAVDNNSKVKTA 116 (176)
T ss_dssp SEEEEEEGGGGGGGCCCSSCEEEEEEC------CSTTCCCCCCHHHHHHH-HHHEEEEEEEEEEEEEESSSCSSSSSCCH
T ss_pred cEEEEechhcCccccCCCCCEeEEEEC------ChhhhcccCHHHHHHHH-HHHCCCCEEEEEEcccccccccccccCCH
Confidence 67899999988763 35789999962 1223321111222 211 122447888877321 1125
Q ss_pred HHHHHHHhcCCc
Q 009324 517 ELGREWYMFLVM 528 (537)
Q Consensus 517 e~grElL~aWGF 528 (537)
+.-.+.|+.-||
T Consensus 117 ~~~~~~l~~aGf 128 (176)
T 2ld4_A 117 SKLCSALTLSGL 128 (176)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 667788999999
No 131
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=22.77 E-value=69 Score=27.30 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=41.0
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcC---CccccCCCcEEEEecCC------------
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNL---NVPALQTDGLIFLWVTG------------ 513 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaL---PV~~LqddglLFLWVTn------------ 513 (537)
...|+++|+..+++ ..++||+|++.- .++ ..++...+ =...|.++|.+++-+.+
T Consensus 77 ~~~~~~~d~~~~~~-~~~~fD~v~~~~-------~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~ 145 (202)
T 2kw5_A 77 KITTVQSNLADFDI-VADAWEGIVSIF-------CHL---PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPK 145 (202)
T ss_dssp CEEEECCBTTTBSC-CTTTCSEEEEEC-------CCC---CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSS
T ss_pred ceEEEEcChhhcCC-CcCCccEEEEEh-------hcC---CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCC
Confidence 35788899987764 246899999731 122 22222111 12234588888776421
Q ss_pred -----cchHHHHHHHhcCCcEEEEE
Q 009324 514 -----RAMELGREWYMFLVMSIIII 533 (537)
Q Consensus 514 -----r~Le~grElL~aWGFry~t~ 533 (537)
...+.-+++|+ ||+++..
T Consensus 146 ~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 146 DLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp SGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred cceeecCHHHHHHHhc--CceEEEE
Confidence 11244556677 9987754
No 132
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=22.32 E-value=13 Score=38.86 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=22.5
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCcc
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWD 478 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWd 478 (537)
..+++.|.+.+.-...++||+|++|||-.
T Consensus 153 v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 153 LAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp CEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred EEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 67888898876522347899999999963
No 133
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=22.24 E-value=70 Score=28.27 Aligned_cols=79 Identities=14% Similarity=-0.006 Sum_probs=44.7
Q ss_pred ceeeccCCcCCCCCC---CCccEEEECCCccccccCCCCCCCHHHHhcC---CccccCCCcEEEEec-------------
Q 009324 451 QWINCDIRNFRMDIL---GQFGVIMADPPWDIHMELPYGTMADDEMRNL---NVPALQTDGLIFLWV------------- 511 (537)
Q Consensus 451 QwIncDVR~fD~siL---GKFDVIlADPPWdi~m~l~Y~TMSddEIkaL---PV~~LqddglLFLWV------------- 511 (537)
.++.+|+...+.... ++||+|++---.. |-.-..+++..+ =..-|.++|.+++-.
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~------~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 138 QVLKCDVTQSQPLGGVSLPPADCLLSTLCLD------AACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp EEEECCTTSSSTTTTCCCCCEEEEEEESCHH------HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred eEEEeeeccCCCCCccccCCccEEEEhhhhh------hhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 789999998775333 7999999742111 101111122111 012244778776532
Q ss_pred ---CCcchHHHHHHHhcCCcEEEEEEe
Q 009324 512 ---TGRAMELGREWYMFLVMSIIIIIV 535 (537)
Q Consensus 512 ---Tnr~Le~grElL~aWGFry~t~Iv 535 (537)
..-..+.-.++|+.=||+.+....
T Consensus 212 ~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 212 FSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp EECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 111234677899999999886653
No 134
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=22.04 E-value=1.4e+02 Score=26.52 Aligned_cols=79 Identities=9% Similarity=0.031 Sum_probs=43.4
Q ss_pred CceeeccCCcCCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEe-cCC---------------
Q 009324 450 PQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLW-VTG--------------- 513 (537)
Q Consensus 450 pQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLW-VTn--------------- 513 (537)
..|+.+|+..+++. .++||+|++.-.... .. +...+.+-=..-|.++|.+++. ...
T Consensus 71 v~~~~~d~~~~~~~-~~~fD~v~~~~~l~~-----~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 142 (239)
T 1xxl_A 71 VRFQQGTAESLPFP-DDSFDIITCRYAAHH-----FS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNR 142 (239)
T ss_dssp EEEEECBTTBCCSC-TTCEEEEEEESCGGG-----CS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHH
T ss_pred eEEEecccccCCCC-CCcEEEEEECCchhh-----cc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHH
Confidence 57888998876542 368999998632211 11 1222211111224477877663 221
Q ss_pred ---------cchHHHHHHHhcCCcEEEEEEec
Q 009324 514 ---------RAMELGREWYMFLVMSIIIIIVH 536 (537)
Q Consensus 514 ---------r~Le~grElL~aWGFry~t~Iv~ 536 (537)
...+.-.++|+.-||+.+....|
T Consensus 143 ~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 143 LRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred hccccccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 11344567888889997765543
No 135
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=21.81 E-value=33 Score=34.37 Aligned_cols=30 Identities=23% Similarity=0.047 Sum_probs=22.3
Q ss_pred CceeeccCCcCCCC-CCCCccEEEECCCccc
Q 009324 450 PQWINCDIRNFRMD-ILGQFGVIMADPPWDI 479 (537)
Q Consensus 450 pQwIncDVR~fD~s-iLGKFDVIlADPPWdi 479 (537)
..+++.|.+.++-. ..++||+|++|||..-
T Consensus 297 ~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg 327 (429)
T 1sqg_A 297 ATVKQGDGRYPSQWCGEQQFDRILLDAPCSA 327 (429)
T ss_dssp CEEEECCTTCTHHHHTTCCEEEEEEECCCCC
T ss_pred eEEEeCchhhchhhcccCCCCEEEEeCCCCc
Confidence 46888888876511 2368999999999854
No 136
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=21.80 E-value=56 Score=22.99 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=10.4
Q ss_pred CCCCCC---CCCcCCCCCCC
Q 009324 270 GGAAGG---GGMMAPRGGRG 286 (537)
Q Consensus 270 ~~~rg~---~~m~~p~~~~~ 286 (537)
|+|||. ||.++|+|-.|
T Consensus 6 pgprgqpgvmgfpgppgppg 25 (31)
T 4gyx_A 6 PGPRGQPGVMGFPGPPGPPG 25 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCccccCCCCCCCCC
Confidence 567754 66676665444
No 137
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=21.34 E-value=45 Score=35.20 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=14.1
Q ss_pred CCCCccEEEECCCcccc
Q 009324 464 ILGQFGVIMADPPWDIH 480 (537)
Q Consensus 464 iLGKFDVIlADPPWdi~ 480 (537)
..++||+|+++|||...
T Consensus 326 ~~~~fD~Iv~NPPf~~~ 342 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMK 342 (544)
T ss_dssp TTCCEEEEEECCCSSCC
T ss_pred ccccccEEEECCCcCCc
Confidence 34699999999999764
No 138
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=21.21 E-value=38 Score=38.73 Aligned_cols=66 Identities=12% Similarity=0.233 Sum_probs=39.3
Q ss_pred ceeeccCCcCCCCCCCCccEEEECCCcccccc---------------------CCCCCCCHHH-HhcCCccccCCCcEEE
Q 009324 451 QWINCDIRNFRMDILGQFGVIMADPPWDIHME---------------------LPYGTMADDE-MRNLNVPALQTDGLIF 508 (537)
Q Consensus 451 QwIncDVR~fD~siLGKFDVIlADPPWdi~m~---------------------l~Y~TMSddE-IkaLPV~~LqddglLF 508 (537)
.....|+...+....++||+|+++|||-.... ..++.++... +...-+..|.++|.+.
T Consensus 383 ~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLA 462 (878)
T 3s1s_A 383 TITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVIS 462 (878)
T ss_dssp EEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEE
T ss_pred eEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEE
Confidence 34455555555555689999999999943210 0122333322 2222233455889999
Q ss_pred EecCCcch
Q 009324 509 LWVTGRAM 516 (537)
Q Consensus 509 LWVTnr~L 516 (537)
+++.+..+
T Consensus 463 fIlP~s~L 470 (878)
T 3s1s_A 463 AIMPKQYL 470 (878)
T ss_dssp EEEETHHH
T ss_pred EEEChHHh
Confidence 99988776
No 139
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=20.68 E-value=1e+02 Score=28.07 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=21.4
Q ss_pred CCceeeccCCcCCCCCCCCccEEEECCCcc
Q 009324 449 EPQWINCDIRNFRMDILGQFGVIMADPPWD 478 (537)
Q Consensus 449 PpQwIncDVR~fD~siLGKFDVIlADPPWd 478 (537)
...|+.+|+..+++ .++||+|++.-.+.
T Consensus 101 ~~~~~~~d~~~~~~--~~~fD~v~~~~~l~ 128 (279)
T 3ccf_A 101 HLHFDVADARNFRV--DKPLDAVFSNAMLH 128 (279)
T ss_dssp TSCEEECCTTTCCC--SSCEEEEEEESCGG
T ss_pred CCEEEECChhhCCc--CCCcCEEEEcchhh
Confidence 35788999988776 47999999865543
No 140
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=20.29 E-value=57 Score=31.05 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=41.4
Q ss_pred eeeccCCcC-C-CC--CCCCccEEEECCCccccccCCCCCCCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCC
Q 009324 452 WINCDIRNF-R-MD--ILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLV 527 (537)
Q Consensus 452 wIncDVR~f-D-~s--iLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWG 527 (537)
.+..|++.. . +. ..+.||+|++|| |.-.. +...|+. ++.+.=...|.++|.|..|+....+ ++.|.+=|
T Consensus 154 l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~--~p~lw~~-~~l~~l~~~L~pGG~l~tysaa~~v---rr~L~~aG 226 (257)
T 2qy6_A 154 LWFGDINELISQLDDSLNQKVDAWFLDG-FAPAK--NPDMWTQ-NLFNAMARLARPGGTLATFTSAGFV---RRGLQEAG 226 (257)
T ss_dssp EEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTT--CGGGCCH-HHHHHHHHHEEEEEEEEESCCBHHH---HHHHHHHT
T ss_pred EEECcHHHHHhhcccccCCeEEEEEECC-CCccc--ChhhcCH-HHHHHHHHHcCCCcEEEEEeCCHHH---HHHHHHCC
Confidence 455665552 1 11 124899999997 33221 1123343 3333222334589999999876543 45555669
Q ss_pred cEEEE
Q 009324 528 MSIII 532 (537)
Q Consensus 528 Fry~t 532 (537)
|++..
T Consensus 227 F~v~~ 231 (257)
T 2qy6_A 227 FTMQK 231 (257)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 98653
Done!