BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009325
         (537 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YYG|A Chain A, Crystal Structure Of The Oxygenase Component (Hpab) Of 4-
           Hydroxyphenylacetate 3-Monooxygenase
 pdb|2YYI|A Chain A, Crystal Structure Of The Oxygenase Component (Hpab) Of 4-
           Hydroxyphenylacetate 3-Monooxygenase Complexed With Fad
 pdb|2YYJ|A Chain A, Crystal Structure Of The Oxygenase Component (Hpab) Of 4-
           Hydroxyphenylacetate 3-Monooxygenase Complexed With Fad
           And 4- Hydroxyphenylacetate
          Length = 481

 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 322 RQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQASTHKQHN----FEFSNMDTPTPKS 377
           R L   +   T A+ N Q+   RP S  +P P +     KQ         + M    P +
Sbjct: 131 RYLRDQDLATTHALTNPQVNRARPPSG-QPDPYIPVGVVKQTEKGIVVRGARMTATFPLA 189

Query: 378 AKSTILTATRPVRSPSSSK------IPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMS 431
            +  I  +T  +    S K      +P  +P L    R  + G  SPFD PL      M 
Sbjct: 190 DEVLIFPST--LLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMD 247

Query: 432 C 432
           C
Sbjct: 248 C 248


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.127    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,480,492
Number of Sequences: 62578
Number of extensions: 417374
Number of successful extensions: 873
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 7
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)