Query 009325
Match_columns 537
No_of_seqs 220 out of 471
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 23:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.4 2.9E-13 6.2E-18 119.2 5.7 45 437-481 34-81 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.7 4.2E-05 9E-10 49.4 3.2 21 156-176 1-21 (21)
3 smart00015 IQ Short calmodulin 97.0 0.00056 1.2E-08 46.2 2.9 22 155-176 2-23 (26)
4 KOG0160 Myosin class V heavy c 96.8 0.0026 5.7E-08 74.0 7.7 62 155-220 672-734 (862)
5 KOG0520 Uncharacterized conser 95.1 0.015 3.2E-07 68.4 3.4 69 154-222 808-884 (975)
6 PTZ00014 myosin-A; Provisional 94.7 0.038 8.3E-07 64.7 5.1 41 157-197 778-819 (821)
7 KOG0160 Myosin class V heavy c 94.1 0.12 2.7E-06 60.6 7.5 65 154-221 694-758 (862)
8 COG5022 Myosin heavy chain [Cy 93.0 0.19 4.1E-06 61.3 6.9 64 156-220 745-809 (1463)
9 KOG2128 Ras GTPase-activating 87.5 1.2 2.6E-05 54.5 6.9 68 154-221 563-639 (1401)
10 PF00612 IQ: IQ calmodulin-bin 83.8 0.95 2.1E-05 29.0 2.1 19 179-197 2-20 (21)
11 KOG0164 Myosin class I heavy c 82.9 3.5 7.6E-05 48.0 7.4 53 157-219 697-749 (1001)
12 KOG0520 Uncharacterized conser 79.4 4.8 0.0001 48.3 7.2 64 157-220 834-930 (975)
13 KOG4427 E3 ubiquitin protein l 75.4 9.1 0.0002 45.0 7.8 24 153-176 27-50 (1096)
14 smart00015 IQ Short calmodulin 69.4 3.9 8.5E-05 27.4 2.0 19 179-197 4-22 (26)
15 PTZ00014 myosin-A; Provisional 68.3 11 0.00024 44.8 6.6 38 180-220 779-816 (821)
16 KOG0163 Myosin class VI heavy 64.1 13 0.00028 43.9 5.9 35 154-188 811-846 (1259)
17 KOG0377 Protein serine/threoni 58.2 13 0.00027 41.6 4.3 34 154-187 15-48 (631)
18 KOG0942 E3 ubiquitin protein l 56.8 7.6 0.00017 46.2 2.6 25 152-176 25-49 (1001)
19 KOG2128 Ras GTPase-activating 51.6 26 0.00056 43.7 5.9 62 160-222 539-610 (1401)
20 KOG0165 Microtubule-associated 45.2 41 0.00089 39.9 5.9 23 154-176 941-963 (1023)
21 KOG0162 Myosin class I heavy c 38.4 27 0.00059 41.2 3.2 22 157-178 697-718 (1106)
22 KOG0161 Myosin class II heavy 35.2 42 0.0009 43.6 4.4 34 159-192 776-813 (1930)
23 KOG0161 Myosin class II heavy 34.3 51 0.0011 42.9 4.9 40 179-218 774-813 (1930)
24 PF08763 Ca_chan_IQ: Voltage g 29.0 58 0.0013 24.3 2.5 20 155-174 8-27 (35)
25 COG5022 Myosin heavy chain [Cy 21.8 2.8E+02 0.0061 35.4 7.9 64 155-219 792-857 (1463)
26 PRK14950 DNA polymerase III su 20.1 4.2E+02 0.0091 30.3 8.6 11 161-171 466-476 (585)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.40 E-value=2.9e-13 Score=119.22 Aligned_cols=45 Identities=40% Similarity=0.580 Sum_probs=37.9
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCC---CcccccccCCCCCCCC
Q 009325 437 VPNYMTPTVSAKAKVRPNSNPKERFPGTP---SSESQRRLSFPLTQGI 481 (537)
Q Consensus 437 ~PnYMA~TESAKAKaRS~SaPkQR~~~tp---~s~aKKRLSFP~~~~~ 481 (537)
+|||||+|||||||+|+||+||||++... ...++||+|||+....
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~ 81 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNS 81 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCC
Confidence 59999999999999999999999976532 3458999999976653
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.69 E-value=4.2e-05 Score=49.35 Aligned_cols=21 Identities=38% Similarity=0.793 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHH
Q 009325 156 HASATKIQAAYRGYMARRSFR 176 (537)
Q Consensus 156 e~AAI~IQsAfRGylARR~lr 176 (537)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999874
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.04 E-value=0.00056 Score=46.16 Aligned_cols=22 Identities=45% Similarity=0.797 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHH
Q 009325 155 RHASATKIQAAYRGYMARRSFR 176 (537)
Q Consensus 155 ee~AAI~IQsAfRGylARR~lr 176 (537)
.+.||++||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999884
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.83 E-value=0.0026 Score=73.96 Aligned_cols=62 Identities=26% Similarity=0.330 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009325 155 RHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ 220 (537)
Q Consensus 155 ee~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R 220 (537)
...+++.||..||||+.|+.|. ..++++-||+.+||.++|++. + ..-+++.||..+|++..|
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r 734 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNR 734 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHH
Confidence 3567888999999999999988 778888899999999999821 1 334455555555554443
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.14 E-value=0.015 Score=68.39 Aligned_cols=69 Identities=26% Similarity=0.431 Sum_probs=56.7
Q ss_pred chhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHH------HH-HHHHHHHHHHHHHHHHHHHHh
Q 009325 154 YRHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTN------AM-KYMQLLVRVQSQIQSRRIQML 222 (537)
Q Consensus 154 ~ee~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~------tl-r~mqa~vriQs~iR~rr~R~s 222 (537)
....||..||.-||||+.|+.+. ...=+|++|+.|||+.||+++.. .+ +.+..|-++|.-+|+++.|-.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~ 884 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRAL 884 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccc
Confidence 35688999999999999999999 77889999999999999999972 22 344677777888888876643
No 6
>PTZ00014 myosin-A; Provisional
Probab=94.67 E-value=0.038 Score=64.71 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhh
Q 009325 157 ASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQT 197 (537)
Q Consensus 157 ~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa 197 (537)
..++.||+++|||++|+.|. .+.+++.||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36788999999999999888 677888889999998888754
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=94.08 E-value=0.12 Score=60.59 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=54.0
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009325 154 YRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQM 221 (537)
Q Consensus 154 ~ee~AAI~IQsAfRGylARR~lralkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R~ 221 (537)
..-.+++.||+.+||+++|+........+.+|..+|++..|+++ .....+++.||+.+|+..+|.
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999998222445566789999999999999 556688999999999999887
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=93.04 E-value=0.19 Score=61.34 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009325 156 HASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ 220 (537)
Q Consensus 156 e~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R 220 (537)
...|++||+||||++.||++. +++.+..+|.+.+|-.+++..-.. --.....++|..++...-|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE-LKWRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc-hHHHhHHHhhHHhHHHhhH
Confidence 567999999999999999988 889888889999998888665322 2345566667666554433
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=87.47 E-value=1.2 Score=54.54 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=56.4
Q ss_pred chhhHHHHHHHHHhhHHH---HH-HHH-HHhhHHHHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHH
Q 009325 154 YRHASATKIQAAYRGYMA---RR-SFR-ALKGLVRLQGVVRGQNVKRQTT----NAMKYMQLLVRVQSQIQSRRIQM 221 (537)
Q Consensus 154 ~ee~AAI~IQsAfRGylA---RR-~lr-alkglVrLQalvRG~~VRrQa~----~tlr~mqa~vriQs~iR~rr~R~ 221 (537)
...-.-+.||.+.|||+. +. .+. ..+.||.+|++.||.++|+... .-..||...+.||+-+|++..|-
T Consensus 563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence 456668899999999993 22 233 7889999999999999999987 35589999999999999988764
No 10
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=83.76 E-value=0.95 Score=29.04 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=14.5
Q ss_pred hhHHHHHHHhhhhhhhhhh
Q 009325 179 KGLVRLQGVVRGQNVKRQT 197 (537)
Q Consensus 179 kglVrLQalvRG~~VRrQa 197 (537)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4577788888888888765
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=82.90 E-value=3.5 Score=48.00 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009325 157 ASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRI 219 (537)
Q Consensus 157 ~AAI~IQsAfRGylARR~lralkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~ 219 (537)
.-++.||.++||+++|..|+.++....|-...|.+.+ -..+..||.++|+.+.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~----------ks~v~el~~~~rg~k~ 749 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKL----------KSYVQELQRRFRGAKQ 749 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhh
Confidence 4588999999999999999965554433113332111 1235567777777653
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=79.40 E-value=4.8 Score=48.27 Aligned_cols=64 Identities=33% Similarity=0.413 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhHHHHHHHH-HHhh------HH----HHHHHhhhhhhhhhhH----------------------HHHHH
Q 009325 157 ASATKIQAAYRGYMARRSFR-ALKG------LV----RLQGVVRGQNVKRQTT----------------------NAMKY 203 (537)
Q Consensus 157 ~AAI~IQsAfRGylARR~lr-alkg------lV----rLQalvRG~~VRrQa~----------------------~tlr~ 203 (537)
.-+|+||+++|||-.|+.|+ +.-+ ++ ++|.-.||...++... ...+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988 2221 11 2366677765443221 22344
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009325 204 MQLLVRVQSQIQSRRIQ 220 (537)
Q Consensus 204 mqa~vriQs~iR~rr~R 220 (537)
-+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 48999999999988776
No 13
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=9.1 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=22.0
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHH
Q 009325 153 RYRHASATKIQAAYRGYMARRSFR 176 (537)
Q Consensus 153 ~~ee~AAI~IQsAfRGylARR~lr 176 (537)
.+.|.||+.||..+|||++|+.+.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999886
No 14
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=69.43 E-value=3.9 Score=27.41 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=15.0
Q ss_pred hhHHHHHHHhhhhhhhhhh
Q 009325 179 KGLVRLQGVVRGQNVKRQT 197 (537)
Q Consensus 179 kglVrLQalvRG~~VRrQa 197 (537)
+.++.||+.+||+.+|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4577788888888888876
No 15
>PTZ00014 myosin-A; Provisional
Probab=68.32 E-value=11 Score=44.83 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=32.3
Q ss_pred hHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009325 180 GLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ 220 (537)
Q Consensus 180 glVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R 220 (537)
-++.||+.+||...|+++ ++..++++.||+.+|++..+
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999998 45578999999999998765
No 16
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.13 E-value=13 Score=43.88 Aligned_cols=35 Identities=31% Similarity=0.645 Sum_probs=29.5
Q ss_pred chhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHh
Q 009325 154 YRHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVV 188 (537)
Q Consensus 154 ~ee~AAI~IQsAfRGylARR~lr-alkglVrLQalv 188 (537)
.+..+.+++|...||||+|++++ .+.|++++-+|.
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 56778899999999999999998 788888865553
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=58.16 E-value=13 Score=41.57 Aligned_cols=34 Identities=29% Similarity=0.187 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Q 009325 154 YRHASATKIQAAYRGYMARRSFRALKGLVRLQGV 187 (537)
Q Consensus 154 ~ee~AAI~IQsAfRGylARR~lralkglVrLQal 187 (537)
+--.|||.||.-||+|.||...|..-...-+|+|
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 3467999999999999999988866666656776
No 18
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.81 E-value=7.6 Score=46.25 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.2
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHH
Q 009325 152 LRYRHASATKIQAAYRGYMARRSFR 176 (537)
Q Consensus 152 ~~~ee~AAI~IQsAfRGylARR~lr 176 (537)
..++|.+|++||+.+|||++|+..+
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 19
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=51.63 E-value=26 Score=43.73 Aligned_cols=62 Identities=26% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHHHHHhhHHHHHHHHHHh--------hHHHHHHHhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 009325 160 TKIQAAYRGYMARRSFRALK--------GLVRLQGVVRGQNVKRQTT--NAMKYMQLLVRVQSQIQSRRIQML 222 (537)
Q Consensus 160 I~IQsAfRGylARR~lralk--------glVrLQalvRG~~VRrQa~--~tlr~mqa~vriQs~iR~rr~R~s 222 (537)
.+||+-.|||..|-.++.+. .++-+|+++||.++ -... .-......+|.+|+..|+...|-.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~-~~~~~~~~~~~~~evv~~qs~~R~~lsrk~ 610 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ-YIPRDVYLDSAKKEVVKFQSLTRGALSRKK 610 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh-hchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 34599999999999988544 45558999999996 1110 122334778999999999988753
No 20
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=45.23 E-value=41 Score=39.93 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.9
Q ss_pred chhhHHHHHHHHHhhHHHHHHHH
Q 009325 154 YRHASATKIQAAYRGYMARRSFR 176 (537)
Q Consensus 154 ~ee~AAI~IQsAfRGylARR~lr 176 (537)
..-.||+.||.++|||++|+.|.
T Consensus 941 nkKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999997
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=38.37 E-value=27 Score=41.23 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 009325 157 ASATKIQAAYRGYMARRSFRAL 178 (537)
Q Consensus 157 ~AAI~IQsAfRGylARR~lral 178 (537)
-=|.+||.|||.|++||.+-.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ 718 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKM 718 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999987643
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=35.18 E-value=42 Score=43.61 Aligned_cols=34 Identities=38% Similarity=0.577 Sum_probs=22.6
Q ss_pred HHHHHHHHhhHHHHHHHH----HHhhHHHHHHHhhhhh
Q 009325 159 ATKIQAAYRGYMARRSFR----ALKGLVRLQGVVRGQN 192 (537)
Q Consensus 159 AI~IQsAfRGylARR~lr----alkglVrLQalvRG~~ 192 (537)
-+.+|+++||||+|+.|. .+.+|.-||.=+|-..
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888765 3445655666555543
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.30 E-value=51 Score=42.88 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=35.3
Q ss_pred hhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009325 179 KGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRR 218 (537)
Q Consensus 179 kglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr 218 (537)
.-|+.|||.|||+++|+.+..-+.-+.++..||..+|.+.
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456679999999999999988889999999999999883
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=28.98 E-value=58 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHhhHHHHHH
Q 009325 155 RHASATKIQAAYRGYMARRS 174 (537)
Q Consensus 155 ee~AAI~IQsAfRGylARR~ 174 (537)
+--||..||-.||-|.+|+.
T Consensus 8 K~YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999885
No 25
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=21.76 E-value=2.8e+02 Score=35.44 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009325 155 RHASATKIQAAYRGYMARRSFR-ALKGLVRLQ-GVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRI 219 (537)
Q Consensus 155 ee~AAI~IQsAfRGylARR~lr-alkglVrLQ-alvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~ 219 (537)
...++++||..+|.+.-|..++ .+.-|..|| .+.++..++- +..--..+.+.+-+|..+|+...
T Consensus 792 ~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~-~~e~~~~~~~~~L~~~~~rs~~~ 857 (1463)
T COG5022 792 KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE-TEEVEFSLKAEVLIQKFGRSLKA 857 (1463)
T ss_pred HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhhh
Confidence 4678888888888888888888 677777788 4555554444 22223344566666666665544
No 26
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.14 E-value=4.2e+02 Score=30.31 Aligned_cols=11 Identities=9% Similarity=0.452 Sum_probs=6.0
Q ss_pred HHHHHHhhHHH
Q 009325 161 KIQAAYRGYMA 171 (537)
Q Consensus 161 ~IQsAfRGylA 171 (537)
.|+..|.-.+.
T Consensus 466 ~~~~~w~~~~~ 476 (585)
T PRK14950 466 QLEAIWKQILR 476 (585)
T ss_pred HHHHHHHHHHH
Confidence 46665555444
Done!