Query 009326
Match_columns 537
No_of_seqs 267 out of 767
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 23:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0675 Calnexin [Posttranslat 100.0 6E-149 1E-153 1170.2 34.0 479 8-490 5-518 (558)
2 PF00262 Calreticulin: Calreti 100.0 1E-141 2E-146 1096.7 15.1 352 32-389 1-367 (367)
3 KOG0674 Calreticulin [Posttran 100.0 1E-108 2E-113 828.8 27.2 345 11-414 5-358 (406)
4 KOG0675 Calnexin [Posttranslat 100.0 1.4E-37 3.1E-42 328.7 12.0 217 240-490 247-478 (558)
5 PF00262 Calreticulin: Calreti 100.0 8.2E-35 1.8E-39 302.1 1.5 123 239-363 200-326 (367)
6 KOG0674 Calreticulin [Posttran 99.9 5.5E-21 1.2E-25 194.4 17.1 249 84-371 21-306 (406)
7 PF07423 DUF1510: Protein of u 89.4 0.34 7.4E-06 48.7 3.5 26 463-488 11-36 (217)
8 PF14851 FAM176: FAM176 family 81.2 3.9 8.5E-05 39.3 6.1 12 457-468 12-23 (153)
9 PF01102 Glycophorin_A: Glycop 64.2 4.6 0.0001 37.4 2.0 10 480-489 81-90 (122)
10 PRK10404 hypothetical protein; 57.0 20 0.00044 32.1 4.8 32 449-480 65-96 (101)
11 PF06439 DUF1080: Domain of Un 56.4 1.6E+02 0.0036 27.0 12.6 142 37-208 5-153 (185)
12 KOG3054 Uncharacterized conser 56.0 16 0.00035 38.0 4.4 12 525-536 56-67 (299)
13 COG4575 ElaB Uncharacterized c 50.8 17 0.00036 33.1 3.2 23 458-480 77-99 (104)
14 PRK10132 hypothetical protein; 50.2 26 0.00057 31.8 4.4 27 454-480 76-102 (108)
15 PF05957 DUF883: Bacterial pro 49.9 26 0.00055 30.2 4.2 27 453-479 62-88 (94)
16 PF07210 DUF1416: Protein of u 41.7 40 0.00088 29.7 4.1 27 94-121 5-31 (85)
17 PF14575 EphA2_TM: Ephrin type 39.7 36 0.00077 28.9 3.4 21 467-487 3-23 (75)
18 PF05568 ASFV_J13L: African sw 37.5 38 0.00082 32.9 3.5 13 479-491 45-57 (189)
19 PF02439 Adeno_E3_CR2: Adenovi 36.7 44 0.00095 25.5 3.0 17 473-489 15-31 (38)
20 PF04478 Mid2: Mid2 like cell 31.3 11 0.00025 36.3 -1.0 22 469-490 57-78 (154)
21 PF12911 OppC_N: N-terminal TM 30.5 1E+02 0.0022 23.7 4.4 32 455-486 7-38 (56)
22 PF13908 Shisa: Wnt and FGF in 29.5 38 0.00083 32.3 2.3 8 468-475 82-89 (179)
23 PF07010 Endomucin: Endomucin; 27.8 1.1E+02 0.0023 31.8 5.0 28 465-492 193-220 (259)
24 PF15347 PAG: Phosphoprotein a 26.4 51 0.0011 36.2 2.7 27 465-492 16-42 (428)
25 PF07423 DUF1510: Protein of u 26.1 67 0.0015 32.6 3.4 25 465-490 17-41 (217)
26 PF01299 Lamp: Lysosome-associ 25.7 58 0.0013 33.8 2.9 16 95-111 105-120 (306)
27 PF12273 RCR: Chitin synthesis 24.9 37 0.00081 31.0 1.2 6 5-10 1-6 (130)
28 PF04971 Lysis_S: Lysis protei 24.9 75 0.0016 27.0 2.9 36 455-490 23-58 (68)
29 PF01034 Syndecan: Syndecan do 23.5 27 0.00058 29.3 0.0 13 463-475 7-19 (64)
30 PF10717 ODV-E18: Occlusion-de 23.2 1.7E+02 0.0036 26.0 4.7 17 463-479 23-39 (85)
31 PF11025 GP40: Glycoprotein GP 22.1 1.9E+02 0.004 28.1 5.2 20 191-210 59-78 (165)
32 PF04995 CcmD: Heme exporter p 22.0 1.1E+02 0.0024 23.4 3.2 18 465-482 6-23 (46)
No 1
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-149 Score=1170.16 Aligned_cols=479 Identities=55% Similarity=0.966 Sum_probs=423.1
Q ss_pred HHHHHHHHHHHhhhcccccC------------CCcccceecccCcc--cCCCceeccCC---------CccceEEEeCCC
Q 009326 8 SLRFALLLFAAFVSFQLISA------------SDDATILYESFDES--FEGRWIVSQKD---------EYKGVWKHSKSE 64 (537)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~F~E~Fd~~--~~~rWv~S~~~---------~y~G~W~~~~~~ 64 (537)
.++++++||++++.+..... .+-+..|+++|+.+ |. |||.|.++ +|.|+|.++++.
T Consensus 5 ~~~~~~lLli~~v~~~~~~~~~~~~e~~~~~~~~ykspf~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~ 83 (558)
T KOG0675|consen 5 MLLFLFLLLIAAVDGNDDDYEDTCTEPSVFSKESYKSPFADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPP 83 (558)
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccCcchhcccccccce-eeeeeecccccccchhhhccceeeeccCc
Confidence 34456666677766443211 12234478888863 44 89999874 899999999765
Q ss_pred C---CCCceeeecCCccceeeecccCCCccCCCCcEEEEEEEEecCccccCCceEEeeCCCCCCCcccccCCCCCeEEEE
Q 009326 65 G---HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMF 141 (537)
Q Consensus 65 ~---~~D~GL~~~~~a~~yaIs~~l~~p~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMF 141 (537)
. ++|+|||++++|||||||+.|++||+++.++||||||||+|+|++|||||||||+.+..+..+++|+++|||+|||
T Consensus 84 ~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImF 163 (558)
T KOG0675|consen 84 KSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMF 163 (558)
T ss_pred cccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEe
Confidence 3 8999999999999999999999999999999999999999999999999999999877888999999999999999
Q ss_pred cCCCCCCCCeEEEEEecCCCCCccccccccCCCCC----CCCCCCcceEEEEEcCCCceeEeecceeeccccccccCCCC
Q 009326 142 GPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQ 217 (537)
Q Consensus 142 GPDkCG~t~kvHfI~~~knp~tg~~ee~~lk~pp~----~~~D~~tHLYTLIl~pdntfeI~IDg~~~~~G~L~~~~df~ 217 (537)
||||||.+++|||||||+||+||+|+|||++.||. ...|++||||||||+|||||+|||||++++.|||+ +||.
T Consensus 164 GPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll--~Df~ 241 (558)
T KOG0675|consen 164 GPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLL--TDFE 241 (558)
T ss_pred CccccCCcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEecCCCeEEEEecCcEEEecccc--cccC
Confidence 99999999999999999999999999999999998 56799999999999999999999999999999999 8999
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 009326 218 PPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEED 297 (537)
Q Consensus 218 P~~~ppk~I~DP~d~KPeDWdd~~~I~DP~a~KPeDWDe~~p~~I~Dp~a~KPedW~ddep~~I~DP~a~KPedWdd~~d 297 (537)
||++||++|+||+|.||+|||+|++||||+|+||+||||++|++|+|++|+||++|+||||++|+||+|+||+|||+++|
T Consensus 242 Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~d 321 (558)
T KOG0675|consen 242 PPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEED 321 (558)
T ss_pred CCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCcCCCCCCCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeee
Q 009326 298 GEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIW 376 (537)
Q Consensus 298 G~W~~P~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p-~~~~i~~ig~ElW 376 (537)
|+|++|+|.||+|..++|||+|++|||.||+|||+|.+|||+||+|+|+|+||+|+||+||++.+| .+.+|.+||||+|
T Consensus 322 GeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElW 401 (558)
T KOG0675|consen 322 GEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELW 401 (558)
T ss_pred CccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eeccCceeeeeeecCcHHHHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCc-cchhh-HHHHhhhhccchhhhHH-hhhh
Q 009326 377 TMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGL-AGFQT-VFDLLYKVADIPFLDAY-KLKI 453 (537)
Q Consensus 377 ~~~~~~~FDNili~~d~~~A~~~~~~t~~~k~~~e~~~~~~e~~~~~~~~~-~~~~~-~~~~~~~~~~~~f~~~~-~~~~ 453 (537)
+|+++|+|||||||+|+++|+.+++.||..|..+++++.-..+......+. ..++. |+.++..++++.++..+ +.++
T Consensus 402 sMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~~~~~~~~~~~~~~~~~w~~~i~~~~~~v~~i~~~c~~~k~k~ 481 (558)
T KOG0675|consen 402 SMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREKPFVQQVMEAAEGHPWLWAIYILTLLLPVADITKFCAPVKSKI 481 (558)
T ss_pred hcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccchHHHHHHhhccccchHHHHHHHHhhhhHhhhhhcccccccch
Confidence 999999999999999999999999999999988887765222222111222 23444 88899999988888888 6655
Q ss_pred hhHHHhhh-cCchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009326 454 IDVIEKGE-KQPNLTIGILVSVVAVIITVLFKIIFGGK 490 (537)
Q Consensus 454 ~~~~~~~~-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
.+.+++.. .||.+.+++.+.++.. ...++.+.++|+
T Consensus 482 ~~~~~ktd~~qP~~~~~~~~~~~~~-~~~~~~~~~~~~ 518 (558)
T KOG0675|consen 482 SDAIEKTDDEQPNLKIGLEAEIKED-ESDMFKLEFSGS 518 (558)
T ss_pred hhHHhhccccCCCcccchhhhhhhh-hhhhhccccCCc
Confidence 66666444 8999998877766543 444444444443
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=1.1e-141 Score=1096.75 Aligned_cols=352 Identities=59% Similarity=1.161 Sum_probs=264.4
Q ss_pred cceecccCcc--cCCCceeccCC------CccceEEEeCCCC----CCCceeeecCCccceeeecccCCCccCCCCcEEE
Q 009326 32 TILYESFDES--FEGRWIVSQKD------EYKGVWKHSKSEG----HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVL 99 (537)
Q Consensus 32 ~~F~E~Fd~~--~~~rWv~S~~~------~y~G~W~~~~~~~----~~D~GL~~~~~a~~yaIs~~l~~p~~~~~k~LVv 99 (537)
+||+|+|+++ |.+|||+|+++ +|.|+|+++++.. .+|+||||+++|||||||++|++||++++++|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 6899999874 99999999776 5699999998832 7899999999999999999999999999999999
Q ss_pred EEEEEecCccccCCceEEeeCCCCCCCccc-ccCCCCCeEEEEcCCCCCCCCeEEEEEecCCCCCccccccccCCCCCC-
Q 009326 100 QYEVRLQNGLECGGAYLKYLRPQEAGWVSK-EFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSV- 177 (537)
Q Consensus 100 QYeVk~q~~l~CGGaYiKLl~~~~~~~~~~-~f~~~TpY~IMFGPDkCG~t~kvHfI~~~knp~tg~~ee~~lk~pp~~- 177 (537)
|||||||++|+|||||||||+. ..++. +|+++|||+||||||+||.+++|||||||+||+|++++|+|+++++..
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~---~~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~ 157 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPA---SFDQEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPPISC 157 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBT---TSSGGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSSSB-
T ss_pred EEEEEeecceeccceEEEEecC---ccchhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCCccc
Confidence 9999999999999999999974 34454 999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcceEEEEEcCCCceeEeecceeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCC
Q 009326 178 PSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDED 257 (537)
Q Consensus 178 ~~D~~tHLYTLIl~pdntfeI~IDg~~~~~G~L~~~~df~P~~~ppk~I~DP~d~KPeDWdd~~~I~DP~a~KPeDWDe~ 257 (537)
..|++||||||||+|||||+|+|||+++++|||+ +||+|||+||++|+||+|+||+|||||++|+||+|+||+||||+
T Consensus 158 ~~D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~--~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~ 235 (367)
T PF00262_consen 158 FTDKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLL--EDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDED 235 (367)
T ss_dssp HHSSSEEEEEEEEETTTEEEEEETTEEEEEEEHH--HHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS
T ss_pred ccCCCcceEEEEEcCCCeEEEEECCEEeeccccc--cccccCcCChhcccCccccCCcchhhhcccCCccccCccccccc
Confidence 5899999999999999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCCCCCCccCCc
Q 009326 258 APMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPH 337 (537)
Q Consensus 258 ~p~~I~Dp~a~KPedW~ddep~~I~DP~a~KPedWdd~~dG~W~~P~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~ 337 (537)
+|++|+||+|+||++|+|+||++|+||+|+||+|||+++||+|+||+|+||+|.. +|||+|++|||.||+|||+|+|||
T Consensus 236 ~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~ 314 (367)
T PF00262_consen 236 EPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPM 314 (367)
T ss_dssp --SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----E
T ss_pred CcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeeeeeccCceeeeeee
Q 009326 338 IDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILI 389 (537)
Q Consensus 338 I~NP~YkG~W~p~~I~NP~y~~d~~p-~~~~i~~ig~ElW~~~~~~~FDNili 389 (537)
|+||||||+|+||+|+||+|+++.+| .+.+|++||||||||++|++||||||
T Consensus 315 I~NP~YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 315 IPNPNYKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp EE-TT---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred cCCccccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 99999999999999999999999999 78999999999999999999999997
No 3
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-109 Score=828.82 Aligned_cols=345 Identities=43% Similarity=0.828 Sum_probs=315.8
Q ss_pred HHHHHHHHhhhcccccCCCcccceecccC--cccCCCceeccCCC-ccceEEEeCCCC----CCCceeeecCCccceeee
Q 009326 11 FALLLFAAFVSFQLISASDDATILYESFD--ESFEGRWIVSQKDE-YKGVWKHSKSEG----HEDYGLLVGEPAKKYAIV 83 (537)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~F~E~Fd--~~~~~rWv~S~~~~-y~G~W~~~~~~~----~~D~GL~~~~~a~~yaIs 83 (537)
+..++|+++|.++ ++.|||.|.|. ++|+.||+.|++++ ..|.|.++++.. ..|+||++++++||||||
T Consensus 5 ~~~~~ll~~v~~~-----sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~s 79 (406)
T KOG0674|consen 5 FWVLCLLALVALA-----SAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAIS 79 (406)
T ss_pred HHHHHHHHHHHHH-----hhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeeee
Confidence 4566777788887 46899999994 57999999999987 789999998864 459999999999999999
Q ss_pred cccCCCccCCCCcEEEEEEEEecCccccCCceEEeeCCCCCCCcccccCCCCCeEEEEcCCCCCC-CCeEEEEEecCCCC
Q 009326 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGA-TNKVHFILKHKNPK 162 (537)
Q Consensus 84 ~~l~~p~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMFGPDkCG~-t~kvHfI~~~knp~ 162 (537)
++|+ +|+|++|||||||+|||+|+++|||||||||+ .+.++..|+++|||.||||||+||. |+|||+||+|++.
T Consensus 80 a~F~-~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~---~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~- 154 (406)
T KOG0674|consen 80 AKFK-PFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFP---ADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGK- 154 (406)
T ss_pred cccc-cccccCceEEEEEEecccccccCCceeEEeee---cccchhhcCCCcccccccCCcccCCCCceEEEEEecccc-
Confidence 9996 79999999999999999999999999999997 5689999999999999999999997 8999999999863
Q ss_pred CccccccccCCCCCCCCCCCcceEEEEEcCCCceeEeecceeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCc
Q 009326 163 SGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAK 242 (537)
Q Consensus 163 tg~~ee~~lk~pp~~~~D~~tHLYTLIl~pdntfeI~IDg~~~~~G~L~~~~df~P~~~ppk~I~DP~d~KPeDWdd~~~ 242 (537)
+|.+++.++|..|.+|||||||||||+||+|+|||+.+.+|||. .||+ |+||+.|.||.++||+|||+|+.
T Consensus 155 -----nhlikK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle--~DWd--ll~~KKikdP~a~KPedWDer~~ 225 (406)
T KOG0674|consen 155 -----NHLIKKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLE--DDWD--LLPPKKIKDPDAKKPEDWDEREY 225 (406)
T ss_pred -----cchhccccccccCCcceeEEEEecCCCeeEEEEcccccccCccc--cccc--cccccccCCccccCcccchhhcc
Confidence 58889999999999999999999999999999999999999999 5664 89999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCCcCCC
Q 009326 243 IPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRP 322 (537)
Q Consensus 243 I~DP~a~KPeDWDe~~p~~I~Dp~a~KPedW~ddep~~I~DP~a~KPedWdd~~dG~W~~P~i~NP~c~~~~gcG~W~~P 322 (537)
|+||+++||+||+ .|++||||+|+||+||++++||+|++ |
T Consensus 226 I~DpeD~Kp~dwe---------------------~pehipDpdakKpedWddemDGEWe~-------------------P 265 (406)
T KOG0674|consen 226 IPDPEDKKPQDWE---------------------KPEHIPDPDAKKPEDWDDEMDGEWEA-------------------P 265 (406)
T ss_pred CCCccccCccccc---------------------cccccCCcccCCcccccccccCCcCC-------------------C
Confidence 9999999999994 47888999999999999998866555 5
Q ss_pred CCCCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeeeeeccCceeeeeeecCcHHHHHHHHH
Q 009326 323 MKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRA 401 (537)
Q Consensus 323 ~I~NP~ykG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p-~~~~i~~ig~ElW~~~~~~~FDNili~~d~~~A~~~~~ 401 (537)
||+||.|+|.|+|..|.||+|||.|.+++|.||+|..+..- .|..|++||||||||.+|+||||||||+|+++|+++++
T Consensus 266 ~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~eyA~k~~~ 345 (406)
T KOG0674|consen 266 MIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEYAEKFAN 345 (406)
T ss_pred CCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHHHHHHHH
Confidence 67888999999999999999999999999999999877655 78999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHH
Q 009326 402 SAWKPKFDVEKEK 414 (537)
Q Consensus 402 ~t~~~k~~~e~~~ 414 (537)
+||+.....|++.
T Consensus 346 eTwg~~k~~ek~~ 358 (406)
T KOG0674|consen 346 ETWGKTKDAEKEM 358 (406)
T ss_pred hhhcccccHHHHh
Confidence 9999888877654
No 4
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=328.72 Aligned_cols=217 Identities=34% Similarity=0.509 Sum_probs=172.2
Q ss_pred cCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCCc
Q 009326 240 RAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEW 319 (537)
Q Consensus 240 ~~~I~DP~a~KPeDWDe~~p~~I~Dp~a~KPedW~ddep~~I~DP~a~KPedWdd~~dG~W~~P~i~NP~c~~~~gcG~W 319 (537)
..+|+||++.||+||||++ +||||+|+||+|||+++|.+|+|++|+||++|.+++......|....|..|+....|+|
T Consensus 247 p~eI~Dp~d~KP~dWDer~--kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeW 324 (558)
T KOG0675|consen 247 PKEIPDPSDKKPEDWDERA--KIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEW 324 (558)
T ss_pred ccccCCcccCCccchhhhh--cCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCcc
Confidence 3589999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-----CCccCCccCCCCCCCCCCCCCCCCCCCCCCCCC------CC-cccceeeEeeeee---ccCcee
Q 009326 320 KRPMKRNPAYK-----GKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP------DF-EPIAAVGIEIWTM---QDGILF 384 (537)
Q Consensus 320 ~~P~I~NP~yk-----G~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p------~~-~~i~~ig~ElW~~---~~~~~F 384 (537)
++|||.||+|+ |+|+||||.||+|||.|.+++|+||+|.+.++| +| +.+--.++..-+. .=.++-
T Consensus 325 eap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs 404 (558)
T KOG0675|consen 325 EAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMS 404 (558)
T ss_pred ccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcC
Confidence 99999999995 999999999999999999999999999986655 44 4333334443332 223455
Q ss_pred eeeeecCcHHHHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCccchhhHHHHhhhhccchhhhHHhhhhhhHHHhhhcCc
Q 009326 385 DNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGLAGFQTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQP 464 (537)
Q Consensus 385 DNili~~d~~~A~~~~~~t~~~k~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~P 464 (537)
.||++.+-..-...-.+++|....+.-|....++ +......+++++.+|
T Consensus 405 ~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e-------------------------------~~~~~~~~~~~~~~~ 453 (558)
T KOG0675|consen 405 SNILFDNIIITKDIEVAEDIANFTWLLKAAAERE-------------------------------KPFVQQVMEAAEGHP 453 (558)
T ss_pred CCceeceeEEeccHHHHHHhhhhceeeehhhccc-------------------------------chHHHHHHhhccccc
Confidence 8999988876665555566666655443111111 011247889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009326 465 NLTIGILVSVVAVIITVLFKIIFGGK 490 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
++|..+++.+++.+..+ ..+|+.++
T Consensus 454 ~~w~~~i~~~~~~v~~i-~~~c~~~k 478 (558)
T KOG0675|consen 454 WLWAIYILTLLLPVADI-TKFCAPVK 478 (558)
T ss_pred hHHHHHHHHhhhhHhhh-hhcccccc
Confidence 99998888888654433 45666634
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=8.2e-35 Score=302.09 Aligned_cols=123 Identities=47% Similarity=0.882 Sum_probs=72.1
Q ss_pred ccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCC
Q 009326 239 ERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGE 318 (537)
Q Consensus 239 d~~~I~DP~a~KPeDWDe~~p~~I~Dp~a~KPedW~ddep~~I~DP~a~KPedWdd~~dG~W~~P~i~NP~c~~~~gcG~ 318 (537)
-.++|+||+++||+|||+++ +|+||+|+||+||+|++|++|+||+|+||++|++++......|....|..|++...|+
T Consensus 200 ppk~I~Dp~d~KP~DW~d~~--~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGe 277 (367)
T PF00262_consen 200 PPKEIDDPNDKKPEDWDDRE--KIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGE 277 (367)
T ss_dssp S-SCEE-TTT--TTT-TTTS--EEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS
T ss_pred ChhcccCccccCCcchhhhc--ccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCC
Confidence 35789999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC----CCCccCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009326 319 WKRPMKRNPAY----KGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP 363 (537)
Q Consensus 319 W~~P~I~NP~y----kG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p 363 (537)
|++|||.||+| +|+|+||||.||+|||.|+|++|+||+|.+.+.|
T Consensus 278 We~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~YkG~W~p 326 (367)
T PF00262_consen 278 WEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPNYKGEWKP 326 (367)
T ss_dssp ----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT---S---
T ss_pred ccCCccCCCcccCCCccccccccccCccccCCccccccCCccccccccc
Confidence 99999999988 5899999999999999999999999999986544
No 6
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.5e-21 Score=194.43 Aligned_cols=249 Identities=29% Similarity=0.512 Sum_probs=154.8
Q ss_pred cccCCCccCCCCcEEEEEEEEecCccccCCceEEeeCCCCCCCc-cccc--CCCCCeEEEEcC--CC--CCCCCeEEEEE
Q 009326 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWV-SKEF--DNESPYMIMFGP--DK--CGATNKVHFIL 156 (537)
Q Consensus 84 ~~l~~p~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~-~~~f--~~~TpY~IMFGP--Dk--CG~t~kvHfI~ 156 (537)
-.|.+-|...+...+-+..+++.+. |+|+|+.+...-...-. -+.. +.+.-|.+|++= +. -|.|--++|-+
T Consensus 21 Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~FsnK~kTLv~q~tV 98 (406)
T KOG0674|consen 21 VYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPFSNKGKTLVIQFTV 98 (406)
T ss_pred hhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeecccccccccCceEEEEEEe
Confidence 3567778888899999999999887 99999987753211100 0112 222357777752 21 22344567777
Q ss_pred ecCCCC--CccccccccCCCCCCCCCC----CcceEEEEEcCCCceeEeecceeeccccccccCCCCCC-CCCCCC----
Q 009326 157 KHKNPK--SGEYIEHHLKNPPSVPSDK----LTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPP-LIPEKT---- 225 (537)
Q Consensus 157 ~~knp~--tg~~ee~~lk~pp~~~~D~----~tHLYTLIl~pdntfeI~IDg~~~~~G~L~~~~df~P~-~~ppk~---- 225 (537)
+|-.-+ +|-|.- .+ + +-.|+ --.-|..+.-|| |.|-..++-... -.|..- .+--+.
T Consensus 99 kheQ~~dcgggyiK-l~---~-~d~Dq~~f~ges~y~iMfGPD------ICG~~tkKVhvi--l~ykg~nhlikK~i~Ck 165 (406)
T KOG0674|consen 99 KHEQKIDCGGGYIK-LF---P-ADLDQTDFHGESPYNIMFGPD------ICGFGTKKVHVI--LNYKGKNHLIKKDIRCK 165 (406)
T ss_pred cccccccCCceeEE-ee---e-cccchhhcCCCcccccccCCc------ccCCCCceEEEE--Eecccccchhccccccc
Confidence 773322 232321 11 1 11111 112344444454 333322211111 000000 000111
Q ss_pred ----------CCCCCCCCCCCccccCccCC---CCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009326 226 ----------IPDPDDKKPEDWDERAKIPD---PDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDW 292 (537)
Q Consensus 226 ----------I~DP~d~KPeDWdd~~~I~D---P~a~KPeDWDe~~p~~I~Dp~a~KPedW~ddep~~I~DP~a~KPedW 292 (537)
|-.|++.--- .|.. -+..--+|||...|.+|.||+|.||+|| |+.++|+||+.+||++|
T Consensus 166 ~D~~tHlYTlIlRPd~TYeV------kIDn~~~esGsle~DWdll~~KKikdP~a~KPedW--Der~~I~DpeD~Kp~dw 237 (406)
T KOG0674|consen 166 DDELTHLYTLILRPDATYEV------KIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDW--DEREYIPDPEDKKPQDW 237 (406)
T ss_pred cCCcceeEEEEecCCCeeEE------EEcccccccCccccccccccccccCCccccCcccc--hhhccCCCccccCcccc
Confidence 2223222111 2222 2456678999999999999999999999 45799999999999999
Q ss_pred CCcCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCCC------CCCCCCc
Q 009326 293 DDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE------LDKPDFE 366 (537)
Q Consensus 293 dd~~dG~W~~P~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~p~~I~NP~y~~------d~~p~~~ 366 (537)
+-. -.|++|.. ++|.-++-...|+|.||||+||.|+|+|+|++|.||+|.+ +.||.|.
T Consensus 238 e~p-------ehipDpda---------kKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~ 301 (406)
T KOG0674|consen 238 EKP-------EHIPDPDA---------KKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYP 301 (406)
T ss_pred ccc-------cccCCccc---------CCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCC
Confidence 943 37888887 6788889999999999999999999999999999999985 5666776
Q ss_pred cccee
Q 009326 367 PIAAV 371 (537)
Q Consensus 367 ~i~~i 371 (537)
+-..+
T Consensus 302 ~d~~l 306 (406)
T KOG0674|consen 302 DDPEL 306 (406)
T ss_pred CCcce
Confidence 54433
No 7
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=89.40 E-value=0.34 Score=48.69 Aligned_cols=26 Identities=19% Similarity=0.398 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhC
Q 009326 463 QPNLTIGILVSVVAVIITVLFKIIFG 488 (537)
Q Consensus 463 ~P~~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
+-+.+++++++||++||+++..++|.
T Consensus 11 K~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 11 KTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhee
Confidence 34566777777766555554444443
No 8
>PF14851 FAM176: FAM176 family
Probab=81.16 E-value=3.9 Score=39.29 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=7.4
Q ss_pred HHhhhcCchhHH
Q 009326 457 IEKGEKQPNLTI 468 (537)
Q Consensus 457 ~~~~~~~P~~~~ 468 (537)
...++.+|+-++
T Consensus 12 ya~I~~~PE~~a 23 (153)
T PF14851_consen 12 YAHIRDNPERFA 23 (153)
T ss_pred HHHHHhChHHHH
Confidence 345677787654
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=64.17 E-value=4.6 Score=37.45 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=4.5
Q ss_pred HHHHHHhhCC
Q 009326 480 TVLFKIIFGG 489 (537)
Q Consensus 480 ~~~~~~~~~~ 489 (537)
++|+.||+++
T Consensus 81 Illi~y~irR 90 (122)
T PF01102_consen 81 ILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344455543
No 10
>PRK10404 hypothetical protein; Provisional
Probab=57.03 E-value=20 Score=32.09 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=23.1
Q ss_pred HhhhhhhHHHhhhcCchhHHHHHHHHHHHHHH
Q 009326 449 YKLKIIDVIEKGEKQPNLTIGILVSVVAVIIT 480 (537)
Q Consensus 449 ~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 480 (537)
++......-+.+.++||-++|+.++|.+++.+
T Consensus 65 ~k~aa~~td~yV~e~Pw~avGiaagvGlllG~ 96 (101)
T PRK10404 65 AKQAVYRADDYVHEKPWQGIGVGAAVGLVLGL 96 (101)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34444566678889999999998887754433
No 11
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=56.44 E-value=1.6e+02 Score=27.02 Aligned_cols=142 Identities=12% Similarity=0.197 Sum_probs=68.7
Q ss_pred ccCcccCCCceeccCCCccceEEEeCCCCCCCceee---ecCCccceeeecccCCCccCCCCcEEEEEEEEecCccccCC
Q 009326 37 SFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLL---VGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGG 113 (537)
Q Consensus 37 ~Fd~~~~~rWv~S~~~~y~G~W~~~~~~~~~D~GL~---~~~~a~~yaIs~~l~~p~~~~~k~LVvQYeVk~q~~l~CGG 113 (537)
=|+..-.+.|.........+.|.++.+. |+ .......+.++. +. =++++|+.++|+..+- .+|
T Consensus 5 lf~g~~l~gW~~~~~~~~~~~~~v~dG~------l~~~~~~~~~~~~l~~~---~~----~~df~l~~d~k~~~~~-~sG 70 (185)
T PF06439_consen 5 LFNGKDLDGWKIYGGGWFEGGWSVKDGV------LVSNGSSGSGGGYLYTD---KK----FSDFELEVDFKITPGG-NSG 70 (185)
T ss_dssp SS-SSCGTTEEETTSSSETTTEEEETTE------EE-GGGGESSS--EEES---SE----BSSEEEEEEEEE-TT--EEE
T ss_pred eECCCCHHHCeeCCCCccccCcEeeCCE------EEecccCCCCcceEEEC---Cc----cccEEEEEEEEECCCC-CeE
Confidence 3664445789888766567888777542 33 122222233332 12 2568888888983322 334
Q ss_pred ceEEeeCCCCCCCcccccCCCCCeEEEEcCCCCCCCCeEEEEEecCCCCCccccc---ccc-CCCCCCCCCCCcceEEEE
Q 009326 114 AYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIE---HHL-KNPPSVPSDKLTHVYTAI 189 (537)
Q Consensus 114 aYiKLl~~~~~~~~~~~f~~~TpY~IMFGPDkCG~t~kvHfI~~~knp~tg~~ee---~~l-k~pp~~~~D~~tHLYTLI 189 (537)
=|+..-+ .........-|.+-..++.++ ....-.+|.... ... ...........-|=|+++
T Consensus 71 i~~r~~~------~~~~~~~~~gy~~~i~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~ 135 (185)
T PF06439_consen 71 IFFRAQS------PGDGQDWNNGYEFQIDNSGGG---------TGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIV 135 (185)
T ss_dssp EEEEESS------ECCSSGGGTSEEEEEE-TTTC---------STTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEE
T ss_pred EEEEecc------ccCCCCcceEEEEEEECCCCc---------cCCCCccceEEEeccccccccccccCCCCceEEEEEE
Confidence 3333221 011222234488888888776 112223454321 011 111111222234444555
Q ss_pred EcCCCceeEeecceeeccc
Q 009326 190 LKPDNELRILIDGEEKQKA 208 (537)
Q Consensus 190 l~pdntfeI~IDg~~~~~G 208 (537)
++ .|++.+.|||+.+..-
T Consensus 136 ~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 136 VK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EE-TTEEEEEETTEEEEEE
T ss_pred EE-CCEEEEEECCEEEEEE
Confidence 54 6889999999987644
No 12
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.98 E-value=16 Score=37.96 Aligned_cols=12 Identities=50% Similarity=0.626 Sum_probs=7.3
Q ss_pred hccCccccCCCC
Q 009326 525 TAAAPARRRRRD 536 (537)
Q Consensus 525 ~~~~~~~~~rr~ 536 (537)
+-++.|||.||+
T Consensus 56 ~R~~gr~R~rrd 67 (299)
T KOG3054|consen 56 ARAGGRRRMRRD 67 (299)
T ss_pred hhhccccccccC
Confidence 445557776664
No 13
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=50.78 E-value=17 Score=33.13 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.2
Q ss_pred HhhhcCchhHHHHHHHHHHHHHH
Q 009326 458 EKGEKQPNLTIGILVSVVAVIIT 480 (537)
Q Consensus 458 ~~~~~~P~~~~~~~~~~~~~~~~ 480 (537)
+.+.++||-.||+.++|.+++.+
T Consensus 77 ~yV~e~PWq~VGvaAaVGlllGl 99 (104)
T COG4575 77 DYVRENPWQGVGVAAAVGLLLGL 99 (104)
T ss_pred HHHHcCCchHHHHHHHHHHHHHH
Confidence 56778999999999988865443
No 14
>PRK10132 hypothetical protein; Provisional
Probab=50.15 E-value=26 Score=31.79 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=19.8
Q ss_pred hhHHHhhhcCchhHHHHHHHHHHHHHH
Q 009326 454 IDVIEKGEKQPNLTIGILVSVVAVIIT 480 (537)
Q Consensus 454 ~~~~~~~~~~P~~~~~~~~~~~~~~~~ 480 (537)
...-+.+.++||-.+||.++|++++.+
T Consensus 76 ~~~~~~V~~~Pw~svgiaagvG~llG~ 102 (108)
T PRK10132 76 GCADTFVRERPWCSVGTAAAVGIFIGA 102 (108)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 344467788999999998887755433
No 15
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=49.92 E-value=26 Score=30.22 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=20.4
Q ss_pred hhhHHHhhhcCchhHHHHHHHHHHHHH
Q 009326 453 IIDVIEKGEKQPNLTIGILVSVVAVII 479 (537)
Q Consensus 453 ~~~~~~~~~~~P~~~~~~~~~~~~~~~ 479 (537)
....-+.++++||-.+++.+++++++.
T Consensus 62 ~~~~~~~V~e~P~~svgiAagvG~llG 88 (94)
T PF05957_consen 62 AEQTEDYVRENPWQSVGIAAGVGFLLG 88 (94)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 345667889999999988888775433
No 16
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=41.70 E-value=40 Score=29.73 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.0
Q ss_pred CCcEEEEEEEEecCccccCCceEEeeCC
Q 009326 94 DGTVVLQYEVRLQNGLECGGAYLKYLRP 121 (537)
Q Consensus 94 ~k~LVvQYeVk~q~~l~CGGaYiKLl~~ 121 (537)
.|..|||=.|+ ..|--.||||+.||..
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~ 31 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDS 31 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcC
Confidence 47799999999 8888889999999964
No 17
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=39.72 E-value=36 Score=28.87 Aligned_cols=21 Identities=24% Similarity=0.505 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 009326 467 TIGILVSVVAVIITVLFKIIF 487 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~ 487 (537)
+++++++++++++++++.+++
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred EehHHHHHHHHHHhheeEEEE
Confidence 344444444443333333333
No 18
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=37.54 E-value=38 Score=32.91 Aligned_cols=13 Identities=38% Similarity=0.371 Sum_probs=6.0
Q ss_pred HHHHHHHhhCCCC
Q 009326 479 ITVLFKIIFGGKK 491 (537)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (537)
+++++++|.++|+
T Consensus 45 iivli~lcssRKk 57 (189)
T PF05568_consen 45 IIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHhhhhH
Confidence 3344445555553
No 19
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=36.70 E-value=44 Score=25.49 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhCC
Q 009326 473 SVVAVIITVLFKIIFGG 489 (537)
Q Consensus 473 ~~~~~~~~~~~~~~~~~ 489 (537)
+++++++.++...|+.+
T Consensus 15 g~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 15 GMAIIIICMFYYACCYK 31 (38)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33333333333334443
No 20
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=31.28 E-value=11 Score=36.28 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC
Q 009326 469 GILVSVVAVIITVLFKIIFGGK 490 (537)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
|++++|++++++++|.||..++
T Consensus 57 GVGg~ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 57 GVGGPILLGILALVFIFCIRRK 78 (154)
T ss_pred cccHHHHHHHHHhheeEEEecc
Confidence 3334444344444444444444
No 21
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=30.46 E-value=1e+02 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=20.1
Q ss_pred hHHHhhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 009326 455 DVIEKGEKQPNLTIGILVSVVAVIITVLFKII 486 (537)
Q Consensus 455 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 486 (537)
+.+..+..++...+|+++.+++++++++.-++
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 56677778888877776655554444444333
No 22
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=29.47 E-value=38 Score=32.33 Aligned_cols=8 Identities=25% Similarity=0.937 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 009326 468 IGILVSVV 475 (537)
Q Consensus 468 ~~~~~~~~ 475 (537)
++++++|+
T Consensus 82 vgvi~~Vi 89 (179)
T PF13908_consen 82 VGVICGVI 89 (179)
T ss_pred eehhhHHH
Confidence 33433333
No 23
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=27.78 E-value=1.1e+02 Score=31.84 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 009326 465 NLTIGILVSVVAVIITVLFKIIFGGKKA 492 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.+.+.|++.+++++++.|+.+||....+
T Consensus 193 vvIaliVitl~vf~LvgLyr~C~k~dPg 220 (259)
T PF07010_consen 193 VVIALIVITLSVFTLVGLYRMCWKTDPG 220 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3344455555555566678889865443
No 24
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=26.43 E-value=51 Score=36.21 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 009326 465 NLTIGILVSVVAVIITVLFKIIFGGKKA 492 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.+|+ -+++|.++|++.|++|+|.++-.
T Consensus 16 vlwg-sLaav~~f~lis~LifLCsSC~r 42 (428)
T PF15347_consen 16 VLWG-SLAAVTTFLLISFLIFLCSSCDR 42 (428)
T ss_pred Eeeh-HHHHHHHHHHHHHHHHHhhcccc
Confidence 4454 44445444444455666666644
No 25
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.12 E-value=67 Score=32.61 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009326 465 NLTIGILVSVVAVIITVLFKIIFGGK 490 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
+++|++++ ||++|++..++|.-...
T Consensus 17 NiaI~IV~-lLIiiva~~lf~~~~~~ 41 (217)
T PF07423_consen 17 NIAIGIVS-LLIIIVAYQLFFGGDDS 41 (217)
T ss_pred HHHHHHHH-HHHHHHhhhheecCCCc
Confidence 45666655 44455665566766543
No 26
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=25.71 E-value=58 Score=33.83 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=9.5
Q ss_pred CcEEEEEEEEecCcccc
Q 009326 95 GTVVLQYEVRLQNGLEC 111 (537)
Q Consensus 95 k~LVvQYeVk~q~~l~C 111 (537)
.+-+-.|.|+-.++. |
T Consensus 105 ~p~~g~y~V~~~n~~-C 120 (306)
T PF01299_consen 105 SPSVGTYSVTNGNGT-C 120 (306)
T ss_pred CCccceEEEECCCce-E
Confidence 344666666666555 6
No 27
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.90 E-value=37 Score=30.99 Aligned_cols=6 Identities=17% Similarity=-0.142 Sum_probs=2.6
Q ss_pred hhHHHH
Q 009326 5 MAVSLR 10 (537)
Q Consensus 5 ~~~~~~ 10 (537)
||++|+
T Consensus 1 RW~l~~ 6 (130)
T PF12273_consen 1 RWVLFA 6 (130)
T ss_pred CeeeHH
Confidence 344443
No 28
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.88 E-value=75 Score=27.04 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=25.3
Q ss_pred hHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009326 455 DVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGK 490 (537)
Q Consensus 455 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
.++..+.---|.+||++.+|+..+++.+.-+.|..+
T Consensus 23 ~lld~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 23 QLLDQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 455566556688889988888777777666666543
No 29
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=23.49 E-value=27 Score=29.34 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHH
Q 009326 463 QPNLTIGILVSVV 475 (537)
Q Consensus 463 ~P~~~~~~~~~~~ 475 (537)
++.+.++++++++
T Consensus 7 ~~~vlaavIaG~V 19 (64)
T PF01034_consen 7 RSEVLAAVIAGGV 19 (64)
T ss_dssp -------------
T ss_pred cchHHHHHHHHHH
Confidence 4555554444433
No 30
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=23.23 E-value=1.7e+02 Score=26.00 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=10.1
Q ss_pred CchhHHHHHHHHHHHHH
Q 009326 463 QPNLTIGILVSVVAVII 479 (537)
Q Consensus 463 ~P~~~~~~~~~~~~~~~ 479 (537)
.|.....|++++|++++
T Consensus 23 ~pn~lMtILivLVIIiL 39 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIIL 39 (85)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 56777766665554433
No 31
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=22.11 E-value=1.9e+02 Score=28.07 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=15.8
Q ss_pred cCCCceeEeecceeeccccc
Q 009326 191 KPDNELRILIDGEEKQKANF 210 (537)
Q Consensus 191 ~pdntfeI~IDg~~~~~G~L 210 (537)
+.|+|..|.|||+....-+-
T Consensus 59 ksd~TvkIkvd~kefstlSt 78 (165)
T PF11025_consen 59 KSDSTVKIKVDGKEFSTLST 78 (165)
T ss_pred ccCCeEEEEECCeEcccccc
Confidence 47899999999998765443
No 32
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=22.05 E-value=1.1e+02 Score=23.41 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 009326 465 NLTIGILVSVVAVIITVL 482 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~ 482 (537)
.+|..++++++++++.++
T Consensus 6 yVW~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLIV 23 (46)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888887776544443
Done!