BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009327
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73689|SPPA_SYNY3 Protease 4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sppA
PE=3 SV=1
Length = 610
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 197/381 (51%), Gaps = 19/381 (4%)
Query: 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSC--GWGKVEEIRRHVVDFKKSGKFIIGYVP 219
L L + KAA D RIV + + + G+ + E+++ ++ FK+SGK I+ Y
Sbjct: 80 LPLRTVVNAIEKAAEDDRIVALLIDGRRSNQVDGYANLSEVQQALIKFKQSGKKIVAYGL 139
Query: 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279
E YYLA + + P + GL Q F G L K GI Q R+G YK A +
Sbjct: 140 NYSELGYYLAATADTILINPMGGVEINGLGAQPIFFTGALAKAGIGVQTLRVGSYKGAVE 199
Query: 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEG 338
TR+ +S EN + LL+ I+ +L V++ + ++ +D G+ + E
Sbjct: 200 PYTRENLSPENRQQQQLLLNQIWQIYLTSVANNRSLTVPQLQAIASDQGLLFADIALREK 259
Query: 339 FITNVLYDDEVISMLKERLGV-----------QKDKNLPMVDYRKYSGVRRWTLGLTGGG 387
+ V Y DEV++ LK+ GV ++DK + +Y ++ W
Sbjct: 260 LVDKVTYWDEVLAELKQA-GVWINDPEKIEEQEEDKEFRKISLAEYHRLQNWETENHDQD 318
Query: 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447
+IA++ GSI R + I G++ E +R +R+ KA ++RI+SPGG A A
Sbjct: 319 PKIAIVYLEGSIVNGRG----TWENIGGDRYGELLRTIRQDDDIKAVVLRINSPGGSASA 374
Query: 448 SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507
+D++WRE+ LL KPVI SM +VAASGGY++A A I+A+ T+TGSIGV + FN+
Sbjct: 375 ADIIWREVELLQAQKPVIISMGNVAASGGYWIATAGEKIVAQPNTVTGSIGVFSILFNVE 434
Query: 508 KLYEKIGFNKEIISRGKYAEV 528
L +++G N + ++ G+ A V
Sbjct: 435 NLGDRLGLNWDEVATGELANV 455
>sp|P45243|SPPA_HAEIN Protease 4 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=sppA PE=1 SV=1
Length = 615
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 180/368 (48%), Gaps = 14/368 (3%)
Query: 173 KAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACA 231
+A DP+I G+ L + ++ I + FK +GK +I Y + +YYLA
Sbjct: 98 QAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHFKDAGKPVIAYADNYSQGQYYLASF 157
Query: 232 CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENC 291
+E+Y ++GL+ + + +L+K+ + P + R+G YKSA + R MS E
Sbjct: 158 ADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPHIFRVGTYKSAVEPFLRNDMSAEAK 217
Query: 292 EMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLK--------EEGFITNV 343
+ L ++ N++ VS + +K+ I + +++ LK + G +T+V
Sbjct: 218 ANMQRWLGEMWNNYVLSVSENRNIKKDRILPNAKQYLAELKALKGNSTAYAQQRGLVTDV 277
Query: 344 LYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVR 403
+ ++ L G D ++++ Y L ++IAV+ G+I +
Sbjct: 278 VTRLDLDKKLSALFGKGSDGKANLIEFDDYLTQLPDRLEHYNVPNKIAVVNVEGTI--ID 335
Query: 404 SPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SK 462
++G G+ + +RK + KA I+R++SPGG A AS+++ +E L + K
Sbjct: 336 GESDEENAG--GDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEIIRQETENLQKIGK 393
Query: 463 PVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISR 522
PVI SM +AASGGY+++ A I+A++ T+TGSIG+ T +KIG + + +S
Sbjct: 394 PVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFTMFPTFENSIKKIGVHADGVST 453
Query: 523 GKYAEVLA 530
+ A A
Sbjct: 454 TELANTSA 461
>sp|P08395|SPPA_ECOLI Protease 4 OS=Escherichia coli (strain K12) GN=sppA PE=1 SV=2
Length = 618
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 179/407 (43%), Gaps = 25/407 (6%)
Query: 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVE 198
S L+ +L G +D+L+ SL I +A D I GI + ++ + G ++
Sbjct: 78 SKLSRQLLGASSDRLQEN-----SLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQ 132
Query: 199 EIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258
I + + +F+ SGK + + +YYLA +++ P L+G + +
Sbjct: 133 YIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSL 192
Query: 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE 318
L+K+ + V R+G YKSA + R MS E + + ++ N+L+ V++ + E
Sbjct: 193 LDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAE 252
Query: 319 DI--------ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQK-DKNLPMVD 369
+ E G + E + + E+ L + G K DKN +
Sbjct: 253 QVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAIS 312
Query: 370 YRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESK 429
Y Y+ GD I V+ A+G+I + + G+ +IR R
Sbjct: 313 YYDYA-----LKTPADTGDSIGVVFANGAIMDGEE----TQGNVGGDTTAAQIRDARLDP 363
Query: 430 RYKAAIIRIDSPGGDALASDLM-WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILA 488
+ KA ++R++SPGG AS+++ + KPV+ SM +AASGGY+++ A I+A
Sbjct: 364 KVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVA 423
Query: 489 ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRP 535
TLTGSIG+ + + IG + + +S A+V P
Sbjct: 424 NPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALP 470
>sp|Q8Z6F3|SPPA_SALTI Protease 4 OS=Salmonella typhi GN=sppA PE=3 SV=1
Length = 618
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 180/398 (45%), Gaps = 25/398 (6%)
Query: 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEI 200
L +L G +D+L+ SL I +A D I GI L ++ + + I
Sbjct: 80 LGRQLFGASSDRLQEN-----SLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYI 134
Query: 201 RRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLE 260
+ + +F+ SGK + + +YYLA +++ P L+G + +L+
Sbjct: 135 GKALREFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLD 194
Query: 261 KVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI 320
K+ + V R+G YKSA + R MS E + + ++ N+L VS+ + + +
Sbjct: 195 KLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQL 254
Query: 321 ---ERFINDGVYKVERLKEEGFITNVLYD-----DEVISMLKERLGVQK-DKNLPMVDYR 371
+ I DG+ V + + + L D +V L ++ G K + N + Y
Sbjct: 255 FPGAQAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFGWSKTENNYRAISYY 314
Query: 372 KYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRY 431
YS T TGG IAVI A+G+I + + G+ +IR R +
Sbjct: 315 DYS---LKTPADTGG--TIAVIFANGAIMDGEE----TPGNVGGDTTASQIRDARLDPKV 365
Query: 432 KAAIIRIDSPGGDALASDLM-WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAEN 490
KA ++R++SPGG AS+++ + KPV+ SM +AASGGY+++ A I+A
Sbjct: 366 KAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASP 425
Query: 491 LTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV 528
TLTGSIG+ + IG + + +S A++
Sbjct: 426 STLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADI 463
>sp|Q55682|Y021_SYNY3 Putative protease slr0021 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0021 PE=3 SV=1
Length = 277
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 72/110 (65%)
Query: 421 KIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMA 480
K K E K+Y A ++RIDSPGG + S ++ +++ LSE V+AS +++ASGG Y+A
Sbjct: 32 KALKTVEEKKYPALLVRIDSPGGTVVDSQEIYTKLKQLSEKIKVVASFGNISASGGVYIA 91
Query: 481 MAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA 530
M I+A + T+TGSIGV+ NL +L EK+G + ++I G Y ++L+
Sbjct: 92 MGCPHIMANSGTITGSIGVILRGNNLERLLEKVGVSFKVIKSGPYKDILS 141
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 198 EEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGG 257
+EI + + K + + + Y+A C + A G+ ++ + L
Sbjct: 60 QEIYTKLKQLSEKIKVVASFGNISASGGVYIAMGCPHIMANSGTITGSIGVILRGNNLER 119
Query: 258 VLEKVGIEPQVQRIGKYKSAGDQLT--RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGK 315
+LEKVG+ +V + G YK D L+ R+ + EE +L AL+D+ YG ++ V++ +
Sbjct: 120 LLEKVGVSFKVIKSGPYK---DILSFDRELLPEEQS-ILQALIDDSYGQFVSTVAAGRNL 175
Query: 316 RKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDK-NLPMVDYRKYS 374
E ++ F + ++ ++ E G + + +++ G+ DK L ++ K
Sbjct: 176 AVEKVKEFADGRIFTGQQALELGLVDRLGTEEDARQWAATLAGLDPDKVELDTIEDPKPL 235
Query: 375 GVRRWTLGLTGGGDQIAVI 393
VRR LTGG Q+ +
Sbjct: 236 -VRR----LTGGDSQLQTM 249
>sp|Q9K809|SPPA_BACHD Putative signal peptide peptidase SppA OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=sppA PE=3 SV=1
Length = 331
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 366 PMVDYRKYSGV---RRWTLGLTGG--GDQIAVIRASGSISRVRSPLSLSSSGIIGEQ-LI 419
P VD ++ G + T+ TG G IA++ SG I S SL ++G+ + +
Sbjct: 29 PAVDVDEWVGTGTSYKQTIVETGTDFGKSIAILELSGVIQDTGSAPSLLNTGVYHHRDFL 88
Query: 420 EKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES--KPVIASMSDVAASGGY 477
+++ K E I+++++PGG L S + +++ + + KPV SM ++AASGGY
Sbjct: 89 KQLEKAGEDPNIAGIILQVNTPGGGVLESAEIHKQVEEIVQDSEKPVYVSMGNMAASGGY 148
Query: 478 YMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA 530
Y++ A I A T+TGSIGV+ ++ L E +G G Y ++L+
Sbjct: 149 YISAPATKIYAHPQTITGSIGVIMQSIDISGLAENLGIEFNTFKSGPYKDILS 201
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 8/190 (4%)
Query: 173 KAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHV----VDFKKSGKFIIGYVPVCGEKEYYL 228
KA DP I GI L + G + EI + V D +K +G + G YY+
Sbjct: 93 KAGEDPNIAGIILQVNTPGGGVLESAEIHKQVEEIVQDSEKPVYVSMGNMAASGG--YYI 150
Query: 229 ACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSE 288
+ ++YA P G+ +Q+ + G+ E +GIE + G YK Q TR+ E
Sbjct: 151 SAPATKIYAHPQTITGSIGVIMQSIDISGLAENLGIEFNTFKSGPYKDILSQ-TREVTDE 209
Query: 289 ENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDE 348
E ++L L+D +Y ++ + +G + ++ + +Y + G + + D+
Sbjct: 210 EE-DILQTLVDEMYDEFVRVIVDGRGMSETEVRELADGRIYTGSQAVATGLVDELGGLDD 268
Query: 349 VISMLKERLG 358
VI +KE LG
Sbjct: 269 VIESMKEDLG 278
>sp|O34525|SPPA_BACSU Putative signal peptide peptidase SppA OS=Bacillus subtilis (strain
168) GN=sppA PE=1 SV=1
Length = 335
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 389 QIAVIRASGSISRVRSPLSL-SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447
+IAV+ SG+I SL + G ++ + + ++ K K +++++SPGG
Sbjct: 59 KIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYE 118
Query: 448 SDLMWREIRLLSES--KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFN 505
S + +++ + + KP+ SM +AASGGYY++ AA I A TLTGS+GV+ N
Sbjct: 119 SAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVN 178
Query: 506 LGKLYEKIGFNKEIISRGKYAEVLA 530
KL +K+G + E I G + ++++
Sbjct: 179 YSKLADKLGISFETIKSGAHKDIMS 203
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 116/245 (47%), Gaps = 17/245 (6%)
Query: 141 VLTMKLRGQIADQLKSRF---SSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV 197
+ +++ G I D S + G + +N +A D + GI L + G +
Sbjct: 60 IAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYES 119
Query: 198 EEIRRHVVDFKKSGKFIIGYVPV---CGEKEYYLACACEELYAPPSAYFSLYGLTVQASF 254
EI + + + KK K I YV + YY++ A ++++A P G+ +++
Sbjct: 120 AEIHKKLEEIKKETKKPI-YVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVN 178
Query: 255 LGGVLEKVGIEPQVQRIGKYKSAGDQLT-RKTMSEENCEMLTALLDNIYGNWLDKVSSTK 313
+ +K+GI + + G +K D ++ + M++E ++ +++DN Y ++D +S +
Sbjct: 179 YSKLADKLGISFETIKSGAHK---DIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGR 235
Query: 314 GKRKEDIERFINDGVYKVERLKEEGFITNV-LYDDEVISMLKERLGVQKD-KNLPMVDYR 371
G K ++++ + VY + K+ + + YDD + +M K+ KD KN ++ Y
Sbjct: 236 GMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKD----HKDLKNASVISYE 291
Query: 372 KYSGV 376
+ G+
Sbjct: 292 ESFGL 296
>sp|Q8YFI5|NHAA_BRUME Na(+)/H(+) antiporter NhaA OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=nhaA PE=3 SV=2
Length = 736
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 389 QIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD 444
+I V+R G+I + +R LSL+S+ I E K K A I I+SPGG
Sbjct: 465 EIPVVRLHGAIMTGGTSLRPTLSLASTAGILE-------KAFADKHAPAVAISINSPGGA 517
Query: 445 ALASDLMWREIRLLS--ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502
+ S L++R IR L+ K V + DVAASGGY +A+A I+A+ ++ GSIGVV+
Sbjct: 518 PVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSA 577
Query: 503 KFNLGKLYEKIGFNKEIISRG 523
F +L +KIG + + + G
Sbjct: 578 SFGFPELLKKIGVERRVYTAG 598
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASF-LGGVLEKVGIEPQVQRIGKYKSAG 278
V Y +A A +E+ A PS+ G+ V ASF +L+K+G+E +V G K
Sbjct: 546 VAASGGYMIALAGDEIIADPSSIVGSIGV-VSASFGFPELLKKIGVERRVYTAGSNKVTL 604
Query: 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED 319
D + E+ E L AL I+ ++D V + + D
Sbjct: 605 DPFQPE--KAEDIERLKALQLEIHATFIDMVKERRAGKLGD 643
>sp|Q2YMB3|NHAA_BRUA2 Na(+)/H(+) antiporter NhaA OS=Brucella abortus (strain 2308)
GN=nhaA PE=3 SV=2
Length = 736
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 389 QIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD 444
+I V+R G+I + +R LSL+S+ I E K K A I I+SPGG
Sbjct: 465 EIPVVRLHGAIMTGGTSLRPTLSLASTAGILE-------KAFADKHAPAVAISINSPGGA 517
Query: 445 ALASDLMWREIRLLS--ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502
+ S L++R IR L+ K V + DVAASGGY +A+A I+A+ ++ GSIGVV+
Sbjct: 518 PVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSA 577
Query: 503 KFNLGKLYEKIGFNKEIISRG 523
F +L +KIG + + + G
Sbjct: 578 SFGFPELLKKIGVERRVYTAG 598
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASF-LGGVLEKVGIEPQVQRIGKYKSAG 278
V Y +A A +E+ A PS+ G+ V ASF +L+K+G+E +V G K
Sbjct: 546 VAASGGYMIALAGDEIIADPSSIVGSIGV-VSASFGFPELLKKIGVERRVYTAGSNKVTL 604
Query: 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED 319
D + E+ E L AL I+ ++D V + + D
Sbjct: 605 DPFQPE--KAEDIERLKALQLEIHATFIDMVKERRAGKLGD 643
>sp|Q9X480|SPPA_ENTFC Putative signal peptide peptidase SppA OS=Enterococcus faecium
GN=sppA PE=3 SV=1
Length = 344
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAAS 474
+ + +++K++E K K ++ ++SPGG S + +E+ + + P+ + + AAS
Sbjct: 91 QNFLTQLKKIQEDKAVKGVLLEVNSPGGGIYESAEIAKEMAKIKKLDIPIYTAFKNTAAS 150
Query: 475 GGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQR 534
GGYY++ + I A T TGSIGV+ N L EK+G G ++++ + +
Sbjct: 151 GGYYISAGSDKIFATEETTTGSIGVIISGLNYSGLLEKLGVTDATYKSGALKDMMSPQHK 210
Query: 535 P 535
P
Sbjct: 211 P 211
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 99/237 (41%), Gaps = 14/237 (5%)
Query: 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFV----KAAYDPRIVGIYLHIEPLSCGWGK 196
++ + + G IAD +S S +NF+ K D + G+ L + G +
Sbjct: 65 IVKLSVNGVIADTGESNLFSREQYNH--QNFLTQLKKIQEDKAVKGVLLEVNSPGGGIYE 122
Query: 197 VEEIRRHVVDFKKSGKFI-IGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFL 255
EI + + KK I + YY++ ++++A G+ +
Sbjct: 123 SAEIAKEMAKIKKLDIPIYTAFKNTAASGGYYISAGSDKIFATEETTTGSIGVIISGLNY 182
Query: 256 GGVLEKVGIEPQVQRIGKYKSAGDQLT-RKTMSEENCEMLTALLDNIYGNWLDKVSSTKG 314
G+LEK+G+ + G K D ++ + SEE +++ + + Y +++ V+ +
Sbjct: 183 SGLLEKLGVTDATYKSGALK---DMMSPQHKPSEEENKVIQEFVMSAYDRFVNVVAKGRN 239
Query: 315 KRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYR 371
++ + +Y + E G + + Y ++ + LK+ +K + +++Y+
Sbjct: 240 MDTNAVKELADGRIYDGNQAVENGLVDQIGYSEDALDSLKKE---KKLTDATVIEYK 293
>sp|Q58067|Y651_METJA Putative protease MJ0651 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0651 PE=3 SV=2
Length = 311
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 432 KAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL 491
K ++ ++SPGG+ +AS+ + R++ L++ KPV+ + + ASG Y ++ A I+AE
Sbjct: 86 KGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVVYVEGLDASGAYMVSAPADYIVAEKH 145
Query: 492 TLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
++ GSIGV + L +K+G N I GKY ++ PFR
Sbjct: 146 SIVGSIGVRMDLMHYYGLMKKLGINVTTIKAGKYKDI----GSPFR 187
>sp|P0AG15|SOHB_SHIFL Probable protease SohB OS=Shigella flexneri GN=sohB PE=3 SV=1
Length = 349
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 435 IIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTL 493
++R++SPGG L ++ RL ++ P+ ++ VAASGGY MA A I++ +
Sbjct: 138 VLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAI 197
Query: 494 TGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVL 529
GSIGVV N + + + E+ + G+Y L
Sbjct: 198 VGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTL 233
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 226 YYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285
Y +AC +++ + P A G+ Q L+ I+ ++ G+YK L T
Sbjct: 181 YMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENT 240
Query: 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLY 345
EE E L+ + + D V + DIE+ + ++ E+G + +
Sbjct: 241 --EEGREKFREELNETHQLFKDFVKRMRPSL--DIEQVATGEHWYGQQAVEKGLVDEINT 296
Query: 346 DDEVISMLKE 355
DEVI L E
Sbjct: 297 SDEVILSLME 306
>sp|P0AG14|SOHB_ECOLI Probable protease SohB OS=Escherichia coli (strain K12) GN=sohB
PE=1 SV=1
Length = 349
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 435 IIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTL 493
++R++SPGG L ++ RL ++ P+ ++ VAASGGY MA A I++ +
Sbjct: 138 VLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAI 197
Query: 494 TGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVL 529
GSIGVV N + + + E+ + G+Y L
Sbjct: 198 VGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTL 233
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 226 YYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285
Y +AC +++ + P A G+ Q L+ I+ ++ G+YK L T
Sbjct: 181 YMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENT 240
Query: 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLY 345
EE E L+ + + D V + DIE+ + ++ E+G + +
Sbjct: 241 --EEGREKFREELNETHQLFKDFVKRMRPSL--DIEQVATGEHWYGQQAVEKGLVDEINT 296
Query: 346 DDEVISMLKE 355
DEVI L E
Sbjct: 297 SDEVILSLME 306
>sp|Q8K9P8|SOHB_BUCAP Probable protease SohB OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=sohB PE=3 SV=1
Length = 342
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 434 AIIRIDSPGGDALASDLMWREIRLLSESK-PVIASMSDVAASGGYYMAMAAGTILAENLT 492
++R++S GG L ++ L ++K +I S+ +AASGGY MA A I++
Sbjct: 131 VLLRLESSGGVIHGYGLAAAQLERLRQNKIRLIISIDKIAASGGYMMACVADYIISAPFA 190
Query: 493 LTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA 530
+ GSIGVV N KL +K + E+ + G Y L
Sbjct: 191 IIGSIGVVGQLPNFNKLLKKCNIDVELHTAGDYKRTLT 228
>sp|P57370|SOHB_BUCAI Probable protease SohB OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=sohB PE=3 SV=1
Length = 336
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 428 SKRYKAAIIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAAGTI 486
+ ++ ++R++S GG L ++ RL + +I S+ +AASGGY MA A I
Sbjct: 120 ANKHDEVLLRLESSGGVIHGYGLAASQLNRLRQKGIRLIVSVDKIAASGGYMMACVADYI 179
Query: 487 LAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA 530
++ + GSIGVV N KL +K + E+ + G Y L
Sbjct: 180 VSAPFAIIGSIGVVGQIPNFNKLLKKCNIDFELHTAGDYKRTLT 223
>sp|Q44600|SOHB_BUCSC Probable protease SohB (Fragment) OS=Buchnera aphidicola subsp.
Schlechtendalia chinensis GN=sohB PE=3 SV=1
Length = 305
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 425 VRESKRYKAAIIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAA 483
+ +K ++R++S GG L ++ RL ++ + S+ +AASGGY MA A
Sbjct: 129 ILAAKENDEVLLRLESGGGVIHGYGLASSQLSRLREKNIRLTVSVDKIAASGGYMMACVA 188
Query: 484 GTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAA 531
I+A ++ GSIGVV N KL +K + E+ + G Y L
Sbjct: 189 NYIIAAPFSVIGSIGVVAQIPNFNKLLKKNNVDMELHTSGLYKRTLTV 236
>sp|Q48513|PFAP_LEPBO Putative peptidase PfaP OS=Leptospira borgpetersenii GN=pfaP PE=3
SV=1
Length = 204
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 458 LSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNK 517
L +++ ++ SM D+AASGGYY+A +A I A + T+TGSIGV+ + + +G
Sbjct: 3 LRKTRKIVVSMKDMAASGGYYIASSADKIFALSGTITGSIGVLQW-LRYQRAFGSLGVKM 61
Query: 518 EIISRGKYAEVLA 530
GKY + L+
Sbjct: 62 RTYKEGKYKDSLS 74
>sp|Q89AL0|SOHB_BUCBP Putative protease SohB OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=sohB PE=3 SV=1
Length = 349
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 428 SKRYKAAIIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAAGTI 486
++++ ++R++S GG L ++ RL S + S+ +A SGGY MA A I
Sbjct: 134 AQKHDEVLLRLESSGGTIHGYGLAAVQLQRLRSRKIFLTISIDKIATSGGYMMACVANYI 193
Query: 487 LAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA--AEQRP 535
+A ++ GSIGVV N+ K +K + E+ + G + L E P
Sbjct: 194 IATPFSIIGSIGVVAQFPNIHKFLKKNNIDVELHTAGVHKRTLTIFGENTP 244
>sp|P45315|SOHB_HAEIN Probable protease SohB OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=sohB PE=3 SV=1
Length = 353
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 428 SKRYKAAIIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAAGTI 486
+K ++R++SPGG ++ RL + + ++ VAASGGY MA A I
Sbjct: 134 AKSEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKI 193
Query: 487 LAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKY 525
++ + GSIGVV N+ +L +K + ++++ G++
Sbjct: 194 VSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEF 232
>sp|P03711|VCAC_LAMBD Minor capsid protein C OS=Enterobacteria phage lambda GN=C PE=3
SV=1
Length = 439
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 16/144 (11%)
Query: 390 IAVIRASGS-ISRVRS--PLSLSSSGIIG-EQLIEKIRKVRESKRYKAAIIRIDSPGGDA 445
IAV+ SG+ +SR R+ P S G+ G +I ++++ ++ +D+PGG
Sbjct: 82 IAVLPVSGTLVSRTRALQPYS----GMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMV 137
Query: 446 LAS----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVT 501
+ D++ R + + KPV A +D+ S G +A AA L TGSIGV+
Sbjct: 138 AGAFDCADIIAR----VRDIKPVWALANDMNCSAGQLLASAASRRLVTQTARTGSIGVMM 193
Query: 502 GKFNLGKLYEKIGFNKEIISRGKY 525
N G EK G +I G +
Sbjct: 194 AHSNYGAALEKQGVEITLIYSGSH 217
>sp|P36273|VG05_BPP21 Head-tail preconnector protein GP5 OS=Enterobacteria phage P21 GN=5
PE=3 SV=1
Length = 501
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 411 SGIIG-EQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----SDLMWREIRLLSESKPVI 465
SG+ G + ++ +++ + + ++ IDSPGG A +D+++R L + KPV
Sbjct: 98 SGMTGYDGIVACLQQAMADSQVRGVLLDIDSPGGQAAGAFDCADMIYR----LRQQKPVW 153
Query: 466 ASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKY 525
A +D A S +A A L + GSIGV+ + + G + +I G +
Sbjct: 154 ALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAH 213
Query: 526 A------EVLAAEQR 534
E L AE R
Sbjct: 214 KVDGNQFEALPAEVR 228
>sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3 OS=Homo sapiens GN=DOCK3 PE=1 SV=1
Length = 2030
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 169 ENFVKAAY-----------DPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217
EN+ +AA+ + R + +LH P W + E + R ++ + GK
Sbjct: 1252 ENYTEAAFTLLLYCELLQWEDRPLREFLHY-PSQTEWQRKEGLCRKIIHYFNKGKSWEFG 1310
Query: 218 VPVCGEKEYYLACACEELYAPPSAYFSLYGL-TVQASFLGGVLEKVGIEPQVQRIGKY 274
+P+C E LAC E LY Y SL + ++AS+ ++E+ +EP+ R+G Y
Sbjct: 1311 IPLCRE----LACQYESLYD----YQSLSWIRKMEASYYDNIMEQQRLEPEFFRVGFY 1360
>sp|Q8CIQ7|DOCK3_MOUSE Dedicator of cytokinesis protein 3 OS=Mus musculus GN=Dock3 PE=1 SV=1
Length = 2027
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 169 ENFVKAAY-----------DPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217
EN+ +AA+ + R + +LH P W + E + R ++ + GK
Sbjct: 1249 ENYTEAAFTLLLYCELLQWEDRPLREFLHY-PSQTEWQRKEGLCRKIIHYFNKGKSWEFG 1307
Query: 218 VPVCGEKEYYLACACEELYAPPSAYFSLYGL-TVQASFLGGVLEKVGIEPQVQRIGKY 274
+P+C E LAC E LY Y SL + ++AS+ ++E+ +EP+ R+G Y
Sbjct: 1308 IPLCRE----LACQYESLYD----YQSLSWIRKMEASYYDNIIEQQRLEPEFFRVGFY 1357
>sp|P40511|SPO22_YEAST Sporulation-specific protein 22 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPO22 PE=3 SV=2
Length = 975
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 35 CKCRLLS---FSLNTTTTRSNSHLLSQIHYYHRSFSVRS---FDDSSSETKIQEPQQQAV 88
CKC++ + S++ R+N++LL Y SF S FDD + T+ + +
Sbjct: 105 CKCKIFATKLLSIHEALFRTNTNLLRNFKCYISSFKSASEYRFDDLITNTQQHSEKYLQI 164
Query: 89 VNEDYESRGKSKDEDEYPSGEFEY 112
+NE+ ES ++++ E+ FE+
Sbjct: 165 INENVESFS-NEEKTEFKKLTFEF 187
>sp|A4IR78|RUVX_GEOTN Putative Holliday junction resolvase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=GTNG_2487 PE=3
SV=1
Length = 138
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357
+D I W ++ T G R E ERF +L+EE + VL+D+ + +M ER+
Sbjct: 54 VDTIVVGWPKNMNGTLGPRAEASERF-------AAKLREEFSLPVVLWDERLSTMAAERM 106
Query: 358 GVQKD 362
+ D
Sbjct: 107 LIAAD 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,193,044
Number of Sequences: 539616
Number of extensions: 8546404
Number of successful extensions: 24530
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 24471
Number of HSP's gapped (non-prelim): 60
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)